Citrus Sinensis ID: 013810
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 436 | 2.2.26 [Sep-21-2011] | |||||||
| O80874 | 508 | Alternative NAD(P)H dehyd | yes | no | 0.807 | 0.692 | 0.835 | 1e-168 | |
| Q8GWA1 | 510 | Alternative NAD(P)H dehyd | no | no | 0.885 | 0.756 | 0.755 | 1e-165 | |
| Q55CD9 | 451 | Probable NADH dehydrogena | yes | no | 0.802 | 0.776 | 0.375 | 1e-64 | |
| Q1JPL4 | 571 | NAD(P)H dehydrogenase B1, | no | no | 0.699 | 0.534 | 0.401 | 5e-61 | |
| F4JJJ3 | 580 | NAD(P)H dehydrogenase B3, | no | no | 0.747 | 0.562 | 0.393 | 4e-57 | |
| O43090 | 551 | Probable NADH-ubiquinone | yes | no | 0.720 | 0.569 | 0.380 | 2e-56 | |
| Q94BV7 | 582 | NAD(P)H dehydrogenase B2, | no | no | 0.706 | 0.529 | 0.397 | 3e-55 | |
| O14121 | 551 | Probable NADH-ubiquinone | no | no | 0.731 | 0.578 | 0.362 | 3e-53 | |
| Q9SKT7 | 582 | NAD(P)H dehydrogenase B4, | no | no | 0.701 | 0.525 | 0.388 | 1e-50 | |
| P40215 | 560 | External NADH-ubiquinone | yes | no | 0.805 | 0.626 | 0.358 | 4e-46 |
| >sp|O80874|NDA2_ARATH Alternative NAD(P)H dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/352 (83%), Positives = 319/352 (90%)
Query: 43 PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL 102
P+ V +QYSGL PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPL
Sbjct: 52 PNDVDRSQYSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPL 111
Query: 103 LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162
LASTCVGTLEFRSVAEPI+RIQPAISREPGS+FFL++C+ +D D H VHCET+TD L TL
Sbjct: 112 LASTCVGTLEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTL 171
Query: 163 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGI 222
+PWKFKI+YDKLVIA GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGI
Sbjct: 172 KPWKFKIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGI 231
Query: 223 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF 282
S+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSF
Sbjct: 232 SKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSF 291
Query: 283 DDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
DDRLR YA QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL
Sbjct: 292 DDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSL 351
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQV+ +
Sbjct: 352 GLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAERE 403
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 6EC: .EC: -EC: .EC: - |
| >sp|Q8GWA1|NDA1_ARATH Alternative NAD(P)H dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 581 bits (1498), Expect = e-165, Method: Compositional matrix adjust.
Identities = 294/389 (75%), Positives = 333/389 (85%), Gaps = 3/389 (0%)
Query: 6 HLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRV 65
++ RNP +SY+ SS +T D + ++ +Y GL PTK EKPRV
Sbjct: 20 NVFRNP--ESYTLSSRFCTALQKQQVTDTVQAKEDVV-NALEPQRYDGLAPTKEGEKPRV 76
Query: 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP 125
+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI+RIQP
Sbjct: 77 LVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPISRIQP 136
Query: 126 AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185
AISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI+YDKLV+A GAEASTF
Sbjct: 137 AISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKIAYDKLVLACGAEASTF 196
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
GI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK RLLHCVVVGGGPTGVEF
Sbjct: 197 GINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKRLLHCVVVGGGPTGVEF 256
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
SGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHYA QL+KSGV+LVRGI
Sbjct: 257 SGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHYAIKQLNKSGVKLVRGI 316
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
VK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PGGRIGIDEW+RVPSVQD
Sbjct: 317 VKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPGGRIGIDEWMRVPSVQD 376
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
VFA+GDCSGYLESTGK+ LPALAQV+ +
Sbjct: 377 VFAIGDCSGYLESTGKSTLPALAQVAERE 405
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q55CD9|NDH_DICDI Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/368 (37%), Positives = 217/368 (58%), Gaps = 18/368 (4%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVR-----TTRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 383
YGLLVWSTG+G LVK+ K RI +D+ LRV + +VF+ GDC+
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCANVENKN---- 350
Query: 384 LPALAQVS 391
P AQV+
Sbjct: 351 YPPTAQVA 358
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|Q1JPL4|NDB1_ARATH NAD(P)H dehydrogenase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 128/319 (40%), Positives = 195/319 (61%), Gaps = 14/319 (4%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQ 124
VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E + I
Sbjct: 52 VVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVESVRNIT 111
Query: 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEAS 183
+ E + + C ID N VHC V D+ + +F + YD L++A+GA+ +
Sbjct: 112 KKKNGE--IELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAVGAQVN 167
Query: 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243
TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGGGPTGV
Sbjct: 168 TFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGGGPTGV 227
Query: 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLV 302
EF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++ G+ +
Sbjct: 228 EFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRDGIDVQ 287
Query: 303 RGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR--IGI 354
G+ V D D + + G +P+GL++WSTGVG ++ GGR +
Sbjct: 288 TGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGRRAVAT 347
Query: 355 DEWLRVPSVQDVFAVGDCS 373
+EWL+V ++V+AVGDC+
Sbjct: 348 NEWLQVTGCENVYAVGDCA 366
|
Calcium-dependent NAD(P)H dehydrogenase. Binds calcium ions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|F4JJJ3|NDB3_ARATH NAD(P)H dehydrogenase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 17/343 (4%)
Query: 39 TDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98
++A+PS YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+
Sbjct: 38 SEANPS------YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFA 91
Query: 99 FTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158
FTPLL S GT+E RSV EPI I + E F + C ID + V+C +
Sbjct: 92 FTPLLPSVTCGTVEARSVVEPIRNIARKQNVEMS--FLEAECFKIDPGSKKVYCRS-KQG 148
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + +F + YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + +
Sbjct: 149 VNSKGKKEFDVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKAS 208
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANE 277
+PG++E+E+ R+LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+E A+
Sbjct: 209 LPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADH 268
Query: 278 ILSSFDDRLRHYATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTG 332
IL+ FD R+ +A + ++ G+ + G +VK D S K + + +PYG++VWSTG
Sbjct: 269 ILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTG 328
Query: 333 VGPSTLVKSLDLPKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 373
+G ++K G R + DEWLRV +++A+GDC+
Sbjct: 329 IGTRPVIKDFMKQIGQGNRRALATDEWLRVEGCDNIYALGDCA 371
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|O43090|NDH2_SCHPO Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 196/355 (55%), Gaps = 41/355 (11%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI- 120
K +VVLGSGW +K +D SLY++ VSPR+H +FTP+L S VGTL S+ EPI
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 121 ----ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+I P S + C IDT V T+ E I YD LV
Sbjct: 150 ALFKGKIDP-------SNIHQAECTAIDTSAKKVTIRGTTEANEGKEAV---IPYDTLVF 199
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV---PGISEEEKSRLLHC 233
A+GA TFGI GV+++ FL+E A+++ ++ +L V +S EE++RLLH
Sbjct: 200 AIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIF--EILEQVRFNKDLSPEERARLLHI 257
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
VVGGGPTG+EF+ E+ DFI DV+ + ++ IHVTLIEA +L F L Y
Sbjct: 258 TVVGGGPTGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTEN 317
Query: 293 QLSKSGVRLV-RGIVKDVDSQKLILN----DGT----EVPYGLLVWSTGVGPSTLVKSL- 342
++++ + +VKDV+ + LI+ DG+ E+PYG+LVW+ G+ L ++L
Sbjct: 318 LFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLM 377
Query: 343 -DLPKSPGGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
+P+ G R G +DE+ RV V +++AVGDC+ + LPA AQV+ +Q
Sbjct: 378 SSIPEQSGARKGLIVDEFFRVKGVPEMYAVGDCAF-------SGLPATAQVANQQ 425
|
Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|Q94BV7|NDB2_ARATH NAD(P)H dehydrogenase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 194/322 (60%), Gaps = 14/322 (4%)
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+K +VV+LG+GWAG +K ++ S Y+V +SPRN+ FTPLL S GT+E RSV EPI
Sbjct: 57 KKKKVVLLGTGWAGTSFLKNLNNSQYEVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPI 116
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
I + + + + C ID + V+C + L + +F + YD LVIA GA
Sbjct: 117 RNIG---RKNVDTSYLEAECFKIDPASKKVYCRS-KQGLSSNGKKEFSVDYDYLVIATGA 172
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+++TF I GV+EN FL+EV AQ IR+ ++ + + +P +S+EE+ R+LH VVVGGGP
Sbjct: 173 QSNTFNIPGVEENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGP 232
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGV 299
TGVEF+ EL DF+ D+ Y K + +TL+E A+ IL+ FD R+ +A + S+ G+
Sbjct: 233 TGVEFAAELHDFVTEDLVSLYPRAKGSVRITLLEAADHILTMFDKRITEFAEEKFSRDGI 292
Query: 300 RLVRGIV------KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-- 351
+ G + KD+ S K + + +PYG++VWSTG+G ++K G R
Sbjct: 293 DVKLGSMVTKVNEKDI-SAKTKGGEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRA 351
Query: 352 IGIDEWLRVPSVQDVFAVGDCS 373
+ DEWLRV +++A+GDC+
Sbjct: 352 LATDEWLRVEGTDNIYALGDCA 373
|
Calcium-dependent NAD(P)H dehydrogenase; more efficient on NADH. Binds calcium ions. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|O14121|NDH1_SCHPO Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/348 (36%), Positives = 194/348 (55%), Gaps = 29/348 (8%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVLG+GW +++ IDTSL++V+ VSPRN+ +FT LL ST G++ RS+ +PI
Sbjct: 91 KKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPSTATGSVHTRSIVQPIR 150
Query: 122 RIQPAISREPGSY--FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ R Y F+ + C +D D V+H + T + LE +I YD LV + G
Sbjct: 151 YML----RHKSCYVKFYEAECTDVDADKKVIHIKKTTTDGVDLEQ---EIKYDYLVCSHG 203
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
AE TF I G+ E FL+E+ AQ+IR ++L L + + E + R +H VVVGGG
Sbjct: 204 AETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRYVHTVVVGGG 263
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTG+EF+GE++DFI D++ Y + D VTL+EA +L F +LR Y + S
Sbjct: 264 PTGMEFAGEMADFIEDDLKSWYPELADDFAVTLVEALPSVLPMFSAKLRDYTQSLFDSSH 323
Query: 299 VRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWSTGVGPSTLVKSL-DLPKSP 348
+++ +K V ++ + + DG++ +PYGLLVW+ G L K L + +
Sbjct: 324 IKIRTNTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAGGNRARPLTKKLMEGSEEQ 383
Query: 349 GGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
R G +DE+L++ +D+FA+GDC+ T AQV+ +Q
Sbjct: 384 NNRRGLVVDEYLKLKGYKDIFALGDCT-------HTAYAPTAQVASQQ 424
|
Catalyzes the oxidation of NADH. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
| >sp|Q9SKT7|NDB4_ARATH NAD(P)H dehydrogenase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 190/322 (59%), Gaps = 16/322 (4%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVVLGSGW+G + ++ YDV VSPRN +FTPLL S GT+E RS+ EPI
Sbjct: 63 KKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIR 122
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE-PWKFKISYDKLVIALGA 180
+ R+ G + + C ID N +HC + E +L+ +F + YD L++A+GA
Sbjct: 123 ----GLMRKKGFEYKEAECVKIDASNKKIHCRS--KEGSSLKGTTEFDMDYDILILAVGA 176
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TF GV+E+A FL+E A IR ++ + +P ++EEE+ ++LH VVVGGGP
Sbjct: 177 KPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGGP 236
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TGVEFS EL DF+++DV + Y V+++ +TL+EA + IL+ FD R+ +A + + G+
Sbjct: 237 TGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGI 296
Query: 300 RL-----VRGIVKD-VDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR-- 351
L V G+ D + +++ PYG++VWSTG+G ++K G R
Sbjct: 297 DLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIKDFMQQIGQGQRRV 356
Query: 352 IGIDEWLRVPSVQDVFAVGDCS 373
+ DEWLRV V+A+GD +
Sbjct: 357 LATDEWLRVEGCDGVYALGDTA 378
|
NAD(P)H dehydrogenase; more efficient on NADH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: - EC: . EC: - |
| >sp|P40215|NDH1_YEAST External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 216/388 (55%), Gaps = 37/388 (9%)
Query: 40 DASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99
+A+PST Q+ Q S P + K +V+LGSGW L+K +DT+LY+VV VSPRN+ +F
Sbjct: 93 EANPST-QVPQ-SDTFPNGSKRKT-LVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLF 149
Query: 100 TPLLASTCVGTLEFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDE 158
TPLL ST VGT+E +S+ EP+ I R G +++ + +D +N + ++
Sbjct: 150 TPLLPSTPVGTIELKSIVEPVRTIA---RRSHGEVHYYEAEAYDVDPENKTIKVKSSAKN 206
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + YD LV+ +GA+ +TFG GV E ++FL+E+ AQEIR K++ ++ +
Sbjct: 207 ----NDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAA 262
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 277
+ E++RLL VVVGGGPTGVEF+ EL D++ +D+R+ + I VTL+EA
Sbjct: 263 SLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPN 322
Query: 278 ILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDG----TEVPYGLLVWSTG 332
IL+ FD L YA + + L ++ +VK VD+ + G +PYG+LVW+TG
Sbjct: 323 ILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATG 382
Query: 333 VGPSTLVKSL--DLPKSPGGR-IGIDEWLRVPSVQ-DVFAVGDCSGYLESTGKTVLPAL- 387
P + K+L L + R + ID L++ + +FA+GDC T P L
Sbjct: 383 NAPREVSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDC---------TFHPGLF 433
Query: 388 --AQVSYEQ----LHLFQKPSFLLARNW 409
AQV++++ F+K + NW
Sbjct: 434 PTAQVAHQEGEYLAQYFKKAYKIDQLNW 461
|
External NADH dehydrogenase required for optimum cellular growth with a number of nonfermentable carbon sources, including ethanol. With NDE2, performes the mitochondrial oxidation of cytosolic NADH under these growth conditions. Regulates the mitochondrial glycerol-3-phosphate dehydrogenase, GUT2, also involved in cytosolic NADH oxydation. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 436 | ||||||
| 255569381 | 472 | Rotenone-insensitive NADH-ubiquinone oxi | 0.894 | 0.826 | 0.811 | 1e-177 | |
| 118488127 | 488 | unknown [Populus trichocarpa] | 0.878 | 0.784 | 0.796 | 1e-172 | |
| 357490831 | 566 | hypothetical protein MTR_5g071250 [Medic | 0.889 | 0.685 | 0.751 | 1e-170 | |
| 356500874 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.871 | 0.783 | 0.758 | 1e-169 | |
| 297826393 | 504 | NDA2 H dehydrogenase 2 [Arabidopsis lyra | 0.903 | 0.781 | 0.764 | 1e-167 | |
| 449450824 | 505 | PREDICTED: alternative NAD(P)H dehydroge | 0.903 | 0.780 | 0.755 | 1e-167 | |
| 356553084 | 485 | PREDICTED: probable NADH dehydrogenase-l | 0.871 | 0.783 | 0.753 | 1e-167 | |
| 15227684 | 508 | NADH dehydrogenase [Arabidopsis thaliana | 0.807 | 0.692 | 0.835 | 1e-166 | |
| 224104264 | 452 | predicted protein [Populus trichocarpa] | 0.793 | 0.765 | 0.852 | 1e-166 | |
| 356539622 | 509 | PREDICTED: probable NADH dehydrogenase-l | 0.903 | 0.774 | 0.737 | 1e-165 |
| >gi|255569381|ref|XP_002525658.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] gi|223535094|gb|EEF36776.1| Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 322/397 (81%), Positives = 350/397 (88%), Gaps = 7/397 (1%)
Query: 1 MSLFKHLLRNPTAKSYSYSS---PSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPT 57
MS F +L+R T KS S S+ P +I N +++ L HF+T A P QY+GL PT
Sbjct: 1 MSWFTNLIRISTVKSASSSTKSLPPLITNPNFLISSLFHFSTHAHPPP----QYAGLPPT 56
Query: 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 117
K EKPR+VVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA
Sbjct: 57 KPGEKPRLVVLGSGWAGCRLMKGIDTKLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVA 116
Query: 118 EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177
EPIARIQPAIS+EPGSYFFL++ IDT +H+VHCET TD T++PWKF ISYDKLVIA
Sbjct: 117 EPIARIQPAISKEPGSYFFLANSTAIDTHSHLVHCETATDGSSTMDPWKFDISYDKLVIA 176
Query: 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237
LGAEASTFGIHGVKE+A FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG
Sbjct: 177 LGAEASTFGIHGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 236
Query: 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297
GGPTGVEFSGELSDFI RDVRQRY+HVKDYIHVTLIEANEILSSFDDRLRHYAT QL+KS
Sbjct: 237 GGPTGVEFSGELSDFITRDVRQRYAHVKDYIHVTLIEANEILSSFDDRLRHYATKQLTKS 296
Query: 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW 357
GV+LVRGIVKDV QKL+L+DG+EVPYGLLVWSTGVGPS LVKSLDLPKSPGGRIGIDEW
Sbjct: 297 GVQLVRGIVKDVKPQKLVLSDGSEVPYGLLVWSTGVGPSHLVKSLDLPKSPGGRIGIDEW 356
Query: 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
LRVPSV DVFA+GDCSG+LESTGK+VLPALAQV+ Q
Sbjct: 357 LRVPSVPDVFAIGDCSGFLESTGKSVLPALAQVAERQ 393
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118488127|gb|ABK95883.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 314/394 (79%), Positives = 345/394 (87%), Gaps = 11/394 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MSLF++L++ T+KS P + P N + T LSHFTTD T+Y+GL PTK +
Sbjct: 1 MSLFRNLIQLSTSKS----KPLLQNP-NFLFTSLSHFTTDTP------TRYAGLEPTKGD 49
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI
Sbjct: 50 EKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 109
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
RIQPAIS+ PGSYFFL++C +DT+ H+VHCETVTD L T++PW+FKISYDKL+IALGA
Sbjct: 110 GRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFKISYDKLIIALGA 169
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
EA TFGIHGVKE+A FLREV HAQEIRRKLLLNLMLSD+PG+SEEEKSRLLHCVVVGGGP
Sbjct: 170 EALTFGIHGVKEHAIFLREVRHAQEIRRKLLLNLMLSDMPGLSEEEKSRLLHCVVVGGGP 229
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEILSSFDD LR YAT QL+KSGV
Sbjct: 230 TGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRRYATKQLTKSGVH 289
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV QKLIL DGTEVPYGLLVWSTGVGPS+ VKSL+L KSPGGRIGIDEWLRV
Sbjct: 290 LVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSPGGRIGIDEWLRV 349
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
PSV DVFA+GDCSG+LESTGK VLPALAQV+ Q
Sbjct: 350 PSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQ 383
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490831|ref|XP_003615703.1| hypothetical protein MTR_5g071250 [Medicago truncatula] gi|355517038|gb|AES98661.1| hypothetical protein MTR_5g071250 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/402 (75%), Positives = 347/402 (86%), Gaps = 14/402 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLI--------LTCLSHFTTDASPSTVQLTQYS 52
MSLF++L +KSY +++ + P N LT LS F+T ++P + +Y+
Sbjct: 1 MSLFRNL-----SKSYFFTTKQLFKPPNSTNPSHLFPSLTLLSRFST-STPGSTAPVRYA 54
Query: 53 GLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLE 112
LGPTK +EKPRVVVLG+GWAGCR MKG+D+++YD+VCVSPRNHMVFTPLLASTCVGTLE
Sbjct: 55 ALGPTKPHEKPRVVVLGTGWAGCRFMKGLDSNIYDIVCVSPRNHMVFTPLLASTCVGTLE 114
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
FRSVAEP+ARIQP IS+EPGS+FFL++C GI+ D H V CETVT+ +TL+PWKF ISYD
Sbjct: 115 FRSVAEPVARIQPTISKEPGSFFFLANCTGINADKHEVQCETVTEGTQTLDPWKFTISYD 174
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KLVIALGA+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGISEEEK RLLH
Sbjct: 175 KLVIALGAQPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGISEEEKKRLLH 234
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
CVVVGGGPTGVEFSGELSDFIMRDVRQRY+HVKDYIHVTLIEANEILSSFDDRLRHYAT
Sbjct: 235 CVVVGGGPTGVEFSGELSDFIMRDVRQRYAHVKDYIHVTLIEANEILSSFDDRLRHYATN 294
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRI 352
QL+KSGVRLVRGIVKDV +K+ILNDGTEVPYGLLVWSTGVGPS + SLDLPKSPGGRI
Sbjct: 295 QLTKSGVRLVRGIVKDVQEKKIILNDGTEVPYGLLVWSTGVGPSPFIHSLDLPKSPGGRI 354
Query: 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
GIDEWLRVPSVQD+F++GDCSG++ESTGK LPALAQV+ Q
Sbjct: 355 GIDEWLRVPSVQDIFSIGDCSGFVESTGKPTLPALAQVAERQ 396
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500874|ref|XP_003519255.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/394 (75%), Positives = 345/394 (87%), Gaps = 14/394 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS +HL S +SS +I S T LS F+T +P+ +++GLGPT+A+
Sbjct: 1 MSWLRHL-------SSKFSSTTIT--STRRFTSLSRFSTSTAPA-----RHAGLGPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT++YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTAIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F +SYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTVSYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGRIGIDEWLRV
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIRSLDLPKAPGGRIGIDEWLRV 346
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
P+V+D+F++GDCSG++ESTGKT LPALAQV+ Q
Sbjct: 347 PTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQ 380
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826393|ref|XP_002881079.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] gi|297326918|gb|EFH57338.1| NDA2 H dehydrogenase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 305/399 (76%), Positives = 339/399 (84%), Gaps = 5/399 (1%)
Query: 1 MSLFKHLLR-NPTAKSYS---YSSPSIIMPSNLILTCLSHFTTDAS-PSTVQLTQYSGLG 55
M L K+L R +PT+ S S+ S + S + + A P+ V +QY+GL
Sbjct: 1 MFLIKNLTRISPTSSSIVTRFRSTGSYTLASRFCTASETQIQSPAKIPNGVDRSQYAGLA 60
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPLLASTCVGTLEFRS
Sbjct: 61 PTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 120
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
VAEPI+RIQPAISREPGSYFFL++C+ +D + H VHCET+TD L TL+PWKFKI+YDKLV
Sbjct: 121 VAEPISRIQPAISREPGSYFFLANCSRLDAEAHEVHCETLTDGLNTLKPWKFKIAYDKLV 180
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGIS+EEK RLLHCVV
Sbjct: 181 VASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEKKRLLHCVV 240
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295
VGGGPTGVEFSGELSDFIM+DVRQRYSHVKD IHVTLIEA +ILSSFDDRLR YA QL+
Sbjct: 241 VGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIHVTLIEARDILSSFDDRLRRYAIKQLN 300
Query: 296 KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGID 355
KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS+ V+SL LPK P GRIGID
Sbjct: 301 KSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSSFVRSLGLPKDPTGRIGID 360
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
EW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQV+ +
Sbjct: 361 EWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAERE 399
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450824|ref|XP_004143162.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] gi|449523139|ref|XP_004168582.1| PREDICTED: alternative NAD(P)H dehydrogenase 1, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 302/400 (75%), Positives = 343/400 (85%), Gaps = 6/400 (1%)
Query: 1 MSLFKHLLR-NPTAKSYSYSSPSIIMPSNLILT-CLSHFTT----DASPSTVQLTQYSGL 54
M+ F++L + +P+ ++P +PS T LSHF++ DAS S L++ GL
Sbjct: 1 MAWFRNLNKLSPSKPPLRSTNPHPFLPSTTPFTFLLSHFSSQPISDASASAEALSRPPGL 60
Query: 55 GPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR 114
GPT + EKPRVVVLGSGWAGCRLMKG+DTS+YDV CVSPRNHMVFTPLLASTCVGTLEFR
Sbjct: 61 GPTASGEKPRVVVLGSGWAGCRLMKGLDTSIYDVACVSPRNHMVFTPLLASTCVGTLEFR 120
Query: 115 SVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174
SVAEPI RIQP+ISREPGSYFFL++C ++TD H V CETVTD TLEPW+FK+SYDKL
Sbjct: 121 SVAEPIGRIQPSISREPGSYFFLANCTSVNTDEHSVQCETVTDGSNTLEPWRFKLSYDKL 180
Query: 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234
+IALG++ TFGIHGVKE+A FLREV+HAQEIRRKLLLNLMLSDVPGIS EEK RLLHCV
Sbjct: 181 IIALGSQPLTFGIHGVKEHAIFLREVYHAQEIRRKLLLNLMLSDVPGISVEEKRRLLHCV 240
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294
VVGGGPTGVEFSGELSDFI++DV QRYSHVKDYI VTLIEANEILSSFDDRLRHYAT QL
Sbjct: 241 VVGGGPTGVEFSGELSDFIIKDVTQRYSHVKDYIQVTLIEANEILSSFDDRLRHYATKQL 300
Query: 295 SKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGI 354
+KSGV+LVRGIVKDV Q +ILNDG+EVPYGLLVWSTGVGPS V SL++PKSPGGRIGI
Sbjct: 301 TKSGVQLVRGIVKDVKPQSIILNDGSEVPYGLLVWSTGVGPSPFVNSLEVPKSPGGRIGI 360
Query: 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
DEWLRVP+V+DVFA+GDCSG+LESTGK VLPALAQV+ Q
Sbjct: 361 DEWLRVPAVEDVFAIGDCSGFLESTGKQVLPALAQVAERQ 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553084|ref|XP_003544888.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/394 (75%), Positives = 340/394 (86%), Gaps = 14/394 (3%)
Query: 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKAN 60
MS F+HL S +I S L+ L F+T +P +++GL PT+A+
Sbjct: 1 MSWFRHL---------STKFSAITTTSTHRLSLLPRFSTSTAP-----VRHAGLEPTQAH 46
Query: 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
EKPRVVVLGSGWAGCRLMKG+DT +YDVVCVSPRNHMVFTPLLASTCVGTLEFR+VAEPI
Sbjct: 47 EKPRVVVLGSGWAGCRLMKGLDTQIYDVVCVSPRNHMVFTPLLASTCVGTLEFRTVAEPI 106
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
ARIQPAISREPGSYFFL++C ID DNHVVHCE+VT+ + +PW+F ISYDKLVIALGA
Sbjct: 107 ARIQPAISREPGSYFFLANCTAIDADNHVVHCESVTEGAQAPDPWRFTISYDKLVIALGA 166
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TFGIHGV E+A FLREV+HAQEIRRKLLLNLM+SDVPGI EEEK RLLHCVVVGGGP
Sbjct: 167 QPTTFGIHGVYEHAIFLREVYHAQEIRRKLLLNLMMSDVPGIEEEEKQRLLHCVVVGGGP 226
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300
TGVEFSGELSDFI+RDVRQRY+HVKDYIHVTLIEANEILSSFD RLR YAT QL+KSGVR
Sbjct: 227 TGVEFSGELSDFIVRDVRQRYAHVKDYIHVTLIEANEILSSFDVRLRQYATNQLTKSGVR 286
Query: 301 LVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360
LVRGIVKDV+ +K+ILNDGTEVPYGLLVWSTGVGPS +++SLDLPK+PGGRIGIDEWLRV
Sbjct: 287 LVRGIVKDVEEKKIILNDGTEVPYGLLVWSTGVGPSAIIQSLDLPKAPGGRIGIDEWLRV 346
Query: 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
P+V+D+F++GDCSG++ESTGKT LPALAQV+ Q
Sbjct: 347 PTVEDIFSIGDCSGFVESTGKTPLPALAQVAERQ 380
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227684|ref|NP_180560.1| NADH dehydrogenase [Arabidopsis thaliana] gi|75318710|sp|O80874.1|NDA2_ARATH RecName: Full=Alternative NAD(P)H dehydrogenase 2, mitochondrial; Flags: Precursor gi|3420052|gb|AAC31853.1| putative NADH dehydrogenase (ubiquinone oxidoreductase) [Arabidopsis thaliana] gi|330253238|gb|AEC08332.1| NADH dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/352 (83%), Positives = 319/352 (90%)
Query: 43 PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL 102
P+ V +QYSGL PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPL
Sbjct: 52 PNDVDRSQYSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPL 111
Query: 103 LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162
LASTCVGTLEFRSVAEPI+RIQPAISREPGS+FFL++C+ +D D H VHCET+TD L TL
Sbjct: 112 LASTCVGTLEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTL 171
Query: 163 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGI 222
+PWKFKI+YDKLVIA GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGI
Sbjct: 172 KPWKFKIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGI 231
Query: 223 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF 282
S+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSF
Sbjct: 232 SKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSF 291
Query: 283 DDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
DDRLR YA QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL
Sbjct: 292 DDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSL 351
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQV+ +
Sbjct: 352 GLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVAERE 403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104264|ref|XP_002313376.1| predicted protein [Populus trichocarpa] gi|222849784|gb|EEE87331.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 295/346 (85%), Positives = 319/346 (92%)
Query: 49 TQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV 108
T+Y+GL PTK +EKPRVVVLGSGWAGCRLMKGIDT LYDVVCVSPRNHMVFTPLLASTCV
Sbjct: 2 TRYAGLEPTKGDEKPRVVVLGSGWAGCRLMKGIDTDLYDVVCVSPRNHMVFTPLLASTCV 61
Query: 109 GTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK 168
GTLEFRSVAEPI RIQPAIS+ PGSYFFL++C +DT+ H+VHCETVTD L T++PW+FK
Sbjct: 62 GTLEFRSVAEPIGRIQPAISKAPGSYFFLANCTSLDTEKHMVHCETVTDGLDTVDPWRFK 121
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228
ISYDKL+IALGAEA TFGIHGVKE+A FLREV HAQEIRRKLLLNLMLSD+PG+SEEEKS
Sbjct: 122 ISYDKLIIALGAEALTFGIHGVKEHAIFLREVRHAQEIRRKLLLNLMLSDMPGLSEEEKS 181
Query: 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 288
RLLHCVVVGGGPTGVEFSGELSDFI++DVRQ YSHVKDYIHVTLIEANEILSSFDD LR
Sbjct: 182 RLLHCVVVGGGPTGVEFSGELSDFILKDVRQTYSHVKDYIHVTLIEANEILSSFDDSLRR 241
Query: 289 YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348
YAT QL+KSGV LVRGIVKDV QKLIL DGTEVPYGLLVWSTGVGPS+ VKSL+L KSP
Sbjct: 242 YATKQLTKSGVHLVRGIVKDVKPQKLILTDGTEVPYGLLVWSTGVGPSSFVKSLELSKSP 301
Query: 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
GGRIGIDEWLRVPSV DVFA+GDCSG+LESTGK VLPALAQV+ Q
Sbjct: 302 GGRIGIDEWLRVPSVPDVFAIGDCSGFLESTGKPVLPALAQVAERQ 347
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539622|ref|XP_003538295.1| PREDICTED: probable NADH dehydrogenase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/404 (73%), Positives = 336/404 (83%), Gaps = 10/404 (2%)
Query: 1 MSLFKHLLRNPTAKSYSYSS--------PSIIMPSNLILTCLSHFTTDASPST--VQLTQ 50
M+ ++L + T K S SS P ++PS + S T + P V+
Sbjct: 1 MAWLRNLSKFATMKRASSSSSQRPKNTDPFCLLPSFTFFSNFSTNTIEEKPCVKPVEYNN 60
Query: 51 YSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT 110
YSGL PT+ +EKPRVVVLGSGWAGCRLMKG+D +YD+VCVSPRNHMVFTPLLASTCVGT
Sbjct: 61 YSGLQPTRPHEKPRVVVLGSGWAGCRLMKGLDPRVYDIVCVSPRNHMVFTPLLASTCVGT 120
Query: 111 LEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKIS 170
LEFRSVAEPI RIQPAISREPGSYFFL++C ID NH+VHCETVT+ + T+ PWKF IS
Sbjct: 121 LEFRSVAEPIGRIQPAISREPGSYFFLANCTQIDAHNHMVHCETVTEGVETIAPWKFTIS 180
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YDKLVIALG++ STFGI GVKE+A FLREVHHAQEIRRKLLLNLMLSDVPGISEEEK RL
Sbjct: 181 YDKLVIALGSQPSTFGIQGVKEHAIFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKQRL 240
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290
LHCVVVGGGPTGVEFSGELSDFI +DVRQRY HVKDYI VTLIEANEILSSFDDRLR YA
Sbjct: 241 LHCVVVGGGPTGVEFSGELSDFITKDVRQRYVHVKDYIRVTLIEANEILSSFDDRLRRYA 300
Query: 291 TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG 350
T QL+KSGVRLVRGIVKDV QK+ LNDG+EVPYGLLVWSTGVGP +++SLDLPK+PGG
Sbjct: 301 TKQLTKSGVRLVRGIVKDVKPQKISLNDGSEVPYGLLVWSTGVGPLPMIQSLDLPKAPGG 360
Query: 351 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
RIG+DEWLRVPSVQDVF++GDCSG++ESTG+ LPALAQV+ Q
Sbjct: 361 RIGVDEWLRVPSVQDVFSIGDCSGFVESTGRQTLPALAQVAERQ 404
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 436 | ||||||
| TAIR|locus:2045708 | 508 | NDA2 "AT2G29990" [Arabidopsis | 0.800 | 0.687 | 0.842 | 2.9e-158 | |
| TAIR|locus:2007427 | 510 | NDA1 "AT1G07180" [Arabidopsis | 0.784 | 0.670 | 0.833 | 1.7e-155 | |
| DICTYBASE|DDB_G0270104 | 451 | DDB_G0270104 "putative NADH de | 0.802 | 0.776 | 0.377 | 5.5e-61 | |
| TAIR|locus:2119667 | 580 | NDB3 "AT4G21490" [Arabidopsis | 0.733 | 0.551 | 0.398 | 1.2e-60 | |
| TAIR|locus:2123713 | 571 | NDB1 "AT4G28220" [Arabidopsis | 0.711 | 0.542 | 0.398 | 1.3e-59 | |
| TAIR|locus:2051431 | 582 | NDB4 "AT2G20800" [Arabidopsis | 0.697 | 0.522 | 0.396 | 3.7e-55 | |
| DICTYBASE|DDB_G0290197 | 654 | DDB_G0290197 "putative NADH de | 0.543 | 0.362 | 0.381 | 2.6e-53 | |
| POMBASE|SPBC947.15c | 551 | SPBC947.15c "mitochondrial NAD | 0.736 | 0.582 | 0.385 | 3e-53 | |
| SGD|S000004753 | 560 | NDE1 "Mitochondrial external N | 0.818 | 0.637 | 0.356 | 3.1e-51 | |
| UNIPROTKB|G4N8E7 | 587 | MGG_06276 "Uncharacterized pro | 0.713 | 0.529 | 0.379 | 5.1e-51 |
| TAIR|locus:2045708 NDA2 "AT2G29990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
Identities = 294/349 (84%), Positives = 318/349 (91%)
Query: 43 PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL 102
P+ V +QYSGL PT+ EKPRVVVLGSGWAGCRLMKGIDT+LYDVVCVSPRNHMVFTPL
Sbjct: 52 PNDVDRSQYSGLPPTREGEKPRVVVLGSGWAGCRLMKGIDTNLYDVVCVSPRNHMVFTPL 111
Query: 103 LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162
LASTCVGTLEFRSVAEPI+RIQPAISREPGS+FFL++C+ +D D H VHCET+TD L TL
Sbjct: 112 LASTCVGTLEFRSVAEPISRIQPAISREPGSFFFLANCSRLDADAHEVHCETLTDGLNTL 171
Query: 163 EPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGI 222
+PWKFKI+YDKLVIA GAEASTFGIHGV ENA FLREVHHAQEIRRKLLLNLMLSD PGI
Sbjct: 172 KPWKFKIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGI 231
Query: 223 SEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF 282
S+EEK RLLHCVVVGGGPTGVEFSGELSDFIM+DVRQRY+HVKD IHVTLIEA +ILSSF
Sbjct: 232 SKEEKRRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEARDILSSF 291
Query: 283 DDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342
DDRLR YA QL+KSGVR VRGIVKDV SQKLIL+DGTEVPYGLLVWSTGVGPS V+SL
Sbjct: 292 DDRLRRYAIKQLNKSGVRFVRGIVKDVQSQKLILDDGTEVPYGLLVWSTGVGPSPFVRSL 351
Query: 343 DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVS 391
LPK P GRIGIDEW+RVPSVQDVFA+GDCSGYLE+TGK LPALAQV+
Sbjct: 352 GLPKDPTGRIGIDEWMRVPSVQDVFAIGDCSGYLETTGKPTLPALAQVA 400
|
|
| TAIR|locus:2007427 NDA1 "AT1G07180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1516 (538.7 bits), Expect = 1.7e-155, P = 1.7e-155
Identities = 285/342 (83%), Positives = 315/342 (92%)
Query: 50 QYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVG 109
+Y GL PTK EKPRV+VLGSGWAGCR++KGIDTS+YDVVCVSPRNHMVFTPLLASTCVG
Sbjct: 61 RYDGLAPTKEGEKPRVLVLGSGWAGCRVLKGIDTSIYDVVCVSPRNHMVFTPLLASTCVG 120
Query: 110 TLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169
TLEFRSVAEPI+RIQPAISREPGSY+FL++C+ +D DNH VHCETVT+ TL+PWKFKI
Sbjct: 121 TLEFRSVAEPISRIQPAISREPGSYYFLANCSKLDADNHEVHCETVTEGSSTLKPWKFKI 180
Query: 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSR 229
+YDKLV+A GAEASTFGI+GV ENA FLREVHHAQEIRRKLLLNLMLS+VPGI E+EK R
Sbjct: 181 AYDKLVLACGAEASTFGINGVLENAIFLREVHHAQEIRRKLLLNLMLSEVPGIGEDEKKR 240
Query: 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289
LLHCVVVGGGPTGVEFSGELSDFIM+DVRQRYSHVKD I VTLIEA +ILSSFDDRLRHY
Sbjct: 241 LLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYSHVKDDIRVTLIEARDILSSFDDRLRHY 300
Query: 290 ATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG 349
A QL+KSGV+LVRGIVK+V QKLIL+DGTEVPYG LVWSTGVGPS+ V+SLD PK PG
Sbjct: 301 AIKQLNKSGVKLVRGIVKEVKPQKLILDDGTEVPYGPLVWSTGVGPSSFVRSLDFPKDPG 360
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVS 391
GRIGIDEW+RVPSVQDVFA+GDCSGYLESTGK+ LPALAQV+
Sbjct: 361 GRIGIDEWMRVPSVQDVFAIGDCSGYLESTGKSTLPALAQVA 402
|
|
| DICTYBASE|DDB_G0270104 DDB_G0270104 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 139/368 (37%), Positives = 220/368 (59%)
Query: 28 NLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87
NLI+ ++ + + S+++ K E ++++LG GW +K +++ YD
Sbjct: 5 NLIIRGRNYISDHLTKSSLEKAIIRRQKRGKVIENEKLIILGCGWGSYSFLKNLNSIKYD 64
Query: 88 VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAGIDTD 146
+ +SPRNH +FTPLL S+ VGTLEFRS+AEP+ +R+ + ++ + I+ +
Sbjct: 65 ITVISPRNHFLFTPLLTSSAVGTLEFRSIAEPVRT-----TRDINEFKYIQASVTSINPE 119
Query: 147 NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206
N+ V V +P F++ YDKLVI +G+ +TFGI GV+ENA FL+E+HHA+EI
Sbjct: 120 NNSV---LVKSTFHNEKP--FEMKYDKLVIGVGSRNNTFGIKGVEENANFLKELHHAREI 174
Query: 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK- 265
R+K++ + +P +S EE+ RLL V+VGGG TG+EF+ EL+DF D+ + + V
Sbjct: 175 RQKIIECFERASLPDVSTEERERLLSFVIVGGGATGIEFTSELNDFFSEDLSRLFPFVPV 234
Query: 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGTEVP 323
+ + + L+EA+ +ILS+FD +L A SG+ + VK+V +IL++G +P
Sbjct: 235 NEVKIILLEASGKILSTFDQKLVKKALINFRNSGIDVRTHSSVKEVLKDYVILDNGDRIP 294
Query: 324 YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTV 383
YGLLVWSTG+G LVK+ K RI +D+ LRV + +VF+ GDC+ +E+
Sbjct: 295 YGLLVWSTGIGQHPLVKNSSFEKDSHDRIIVDDHLRVKNYSNVFSFGDCAN-VENKN--- 350
Query: 384 LPALAQVS 391
P AQV+
Sbjct: 351 YPPTAQVA 358
|
|
| TAIR|locus:2119667 NDB3 "AT4G21490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 132/331 (39%), Positives = 198/331 (59%)
Query: 51 YSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGT 110
YS G K +VV+LG+GWAG +K ++ S Y+V +SPRN+ FTPLL S GT
Sbjct: 44 YSNNGVETKTRKRKVVLLGTGWAGASFLKTLNNSSYEVQVISPRNYFAFTPLLPSVTCGT 103
Query: 111 LEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKIS 170
+E RSV EPI I A + F + C ID + V+C + + + +F +
Sbjct: 104 VEARSVVEPIRNI--ARKQNVEMSFLEAECFKIDPGSKKVYCRS-KQGVNSKGKKEFDVD 160
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
YD LVIA GA+++TF I GV+EN FL+EV AQ IR ++ + + +PG++E+E+ R+
Sbjct: 161 YDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRM 220
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHY 289
LH VVVGGGPTGVEF+ EL DF+ D+ + Y K+ + +TL+EA + IL+ FD R+ +
Sbjct: 221 LHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADHILTMFDKRITEF 280
Query: 290 ATTQLSKSGVRLVRG--IVKDVD---SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
A + ++ G+ + G +VK D S K + + +PYG++VWSTG+G ++K
Sbjct: 281 AEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTGIGTRPVIKDFMK 340
Query: 345 PKSPGGR--IGIDEWLRVPSVQDVFAVGDCS 373
G R + DEWLRV +++A+GDC+
Sbjct: 341 QIGQGNRRALATDEWLRVEGCDNIYALGDCA 371
|
|
| TAIR|locus:2123713 NDB1 "AT4G28220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 129/324 (39%), Positives = 199/324 (61%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
++K +VVVLG+GWAG +K +D + YDV VSP+N+ FTPLL S GT+E RS+ E
Sbjct: 47 HKKKKVVVLGTGWAGISFLKDLDITSYDVQVVSPQNYFAFTPLLPSVTCGTVEARSIVES 106
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIAL 178
+ I + E + + C ID N VHC V D+ + +F + YD L++A+
Sbjct: 107 VRNITKKKNGE--IELWEADCFKIDHVNQKVHCRPVFKDDPEASQ--EFSLGYDYLIVAV 162
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238
GA+ +TFG GV EN FL+EV AQ IRR ++ + +PG++EE++ R LH V+VGG
Sbjct: 163 GAQVNTFGTPGVLENCHFLKEVEDAQRIRRGVIDCFEKAILPGLTEEQRRRKLHFVIVGG 222
Query: 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKS 297
GPTGVEF+ EL DFI+ D+ + Y VK+ + +TLI++ + IL++FD+R+ +A + ++
Sbjct: 223 GPTGVEFAAELHDFIIEDITKIYPSVKELVKITLIQSGDHILNTFDERISSFAEQKFTRD 282
Query: 298 GVRLVRGI----VKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGR 351
G+ + G+ V D D + + G +P+GL++WSTGVG ++ GGR
Sbjct: 283 GIDVQTGMRVMSVTDKDITVKVKSSGELVSIPHGLILWSTGVGTRPVISDFMEQVGQGGR 342
Query: 352 --IGIDEWLRVPSVQDVFAVGDCS 373
+ +EWL+V ++V+AVGDC+
Sbjct: 343 RAVATNEWLQVTGCENVYAVGDCA 366
|
|
| TAIR|locus:2051431 NDB4 "AT2G20800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 127/320 (39%), Positives = 191/320 (59%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVVLGSGW+G + ++ YDV VSPRN +FTPLL S GT+E RS+ EPI
Sbjct: 63 KKKVVVLGSGWSGYSFLSYLNNPNYDVQVVSPRNFFLFTPLLPSVTNGTVEARSIVEPIR 122
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE-PWKFKISYDKLVIALGA 180
+ R+ G + + C ID N +HC + E +L+ +F + YD L++A+GA
Sbjct: 123 ----GLMRKKGFEYKEAECVKIDASNKKIHCRS--KEGSSLKGTTEFDMDYDILILAVGA 176
Query: 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240
+ +TF GV+E+A FL+E A IR ++ + +P ++EEE+ ++LH VVVGGGP
Sbjct: 177 KPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKILHFVVVGGGP 236
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TGVEFS EL DF+++DV + Y V+++ +TL+EA + IL+ FD R+ +A + + G+
Sbjct: 237 TGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAFAEEKFQRDGI 296
Query: 300 RLVRG-IVKDVDSQKLILND---GTEV--PYGLLVWSTGVGPSTLVKSLDLPKSPGGR-- 351
L G +V V + ++ + G V PYG++VWSTG+G ++K G R
Sbjct: 297 DLKTGSMVVGVTADEISTKERETGKIVSEPYGMVVWSTGIGSRPVIKDFMQQIGQGQRRV 356
Query: 352 IGIDEWLRVPSVQDVFAVGD 371
+ DEWLRV V+A+GD
Sbjct: 357 LATDEWLRVEGCDGVYALGD 376
|
|
| DICTYBASE|DDB_G0290197 DDB_G0290197 "putative NADH dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
Identities = 93/244 (38%), Positives = 151/244 (61%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N++ R++VLG+GWA ++ ID + Y++V VSPRN+ +FTP+L VG++E RS+ EP
Sbjct: 126 NKRERIIVLGTGWASLSFIQEIDLNKYEIVVVSPRNYFLFTPMLTEATVGSVEVRSIIEP 185
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
I R+ ++ P +Y + C ID N+ + ET D K KI YD+LV+A+G
Sbjct: 186 IRRVLSRLTSRPTTYIE-AECTNIDYVNNCIEIET-HDGSEA----KAKIQYDRLVVAVG 239
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+ FG GV+E+ +L+E A +IR+K++ ++ PG SEEEK RLL +VVGGG
Sbjct: 240 SVPQCFGTKGVEEHCIYLKEAMDAHKIRQKIMDCFERANFPGTSEEEKKRLLSFLVVGGG 299
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSG 298
PT +E S L D+I D+ + + H+ Y +TL++ A+ +L++FD ++ +Y Q + G
Sbjct: 300 PTSIEGSSALYDYIKEDLSKMFPHLSKYPKITLVQSADHLLNTFDLKISNYTEKQFERIG 359
Query: 299 VRLV 302
+ ++
Sbjct: 360 IEVL 363
|
|
| POMBASE|SPBC947.15c SPBC947.15c "mitochondrial NADH dehydrogenase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 134/348 (38%), Positives = 197/348 (56%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
K +VVLGSGW +K +D SLY++ VSPR+H +FTP+L S VGTL S+ EPI
Sbjct: 90 KKNIVVLGSGWGAVAAIKNLDPSLYNITLVSPRDHFLFTPMLPSCTVGTLRLPSITEPIV 149
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
+ +P S + C IDT V T+ E + I YD LV A+GA
Sbjct: 150 ALFKG-KIDP-SNIHQAECTAIDTSAKKV---TIRGTTEANEGKEAVIPYDTLVFAIGAG 204
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNL-MLSDVPGISEEEKSRLLHCVVVGGGP 240
TFGI GV+++ FL+E A+++ ++ L + +S EE++RLLH VVGGGP
Sbjct: 205 NQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERARLLHITVVGGGP 264
Query: 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQLSKSGV 299
TG+EF+ E+ DFI DV+ + ++ IHVTLIEA +L F L Y +
Sbjct: 265 TGMEFAAEMQDFIDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTENLFKNLNI 324
Query: 300 RLV-RGIVKDVDSQKLILN----DGT----EVPYGLLVWSTGVGPSTLVKSL--DLPKSP 348
+++ + +VKDV+ + LI+ DG+ E+PYG+LVW+ G+ L ++L +P+
Sbjct: 325 KIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITARPLTRTLMSSIPEQS 384
Query: 349 GGRIG--IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
G R G +DE+ RV V +++AVGDC+ +G LPA AQV+ +Q
Sbjct: 385 GARKGLIVDEFFRVKGVPEMYAVGDCA----FSG---LPATAQVANQQ 425
|
|
| SGD|S000004753 NDE1 "Mitochondrial external NADH dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 136/382 (35%), Positives = 215/382 (56%)
Query: 40 DASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99
+A+PST Q+ Q S P + K +V+LGSGW L+K +DT+LY+VV VSPRN+ +F
Sbjct: 93 EANPST-QVPQ-SDTFPNGSKRKT-LVILGSGWGSVSLLKNLDTTLYNVVVVSPRNYFLF 149
Query: 100 TPLLASTCVGTLEFRSVAEPIARIQPAISREPGS-YFFLSHCAGIDTDNHVVHCETVTDE 158
TPLL ST VGT+E +S+ EP+ I R G +++ + +D +N + ++
Sbjct: 150 TPLLPSTPVGTIELKSIVEPVRTIA---RRSHGEVHYYEAEAYDVDPENKTIKVKSSAKN 206
Query: 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218
+ + YD LV+ +GA+ +TFG GV E ++FL+E+ AQEIR K++ ++ +
Sbjct: 207 ----NDYDLDLKYDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAA 262
Query: 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NE 277
+ E++RLL VVVGGGPTGVEF+ EL D++ +D+R+ + I VTL+EA
Sbjct: 263 SLSPKDPERARLLSFVVVGGGPTGVEFAAELRDYVDQDLRKWMPELSKEIKVTLVEALPN 322
Query: 278 ILSSFDDRLRHYATTQLSKSGVRL-VRGIVKDVDSQKLILNDGT----EVPYGLLVWSTG 332
IL+ FD L YA + + L ++ +VK VD+ + G +PYG+LVW+TG
Sbjct: 323 ILNMFDKYLVDYAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENIPYGVLVWATG 382
Query: 333 VGPSTLVKSL--DLPKSPGGR-IGIDEWLRVPSVQ-DVFAVGDCSGYLESTGKTVLPALA 388
P + K+L L + R + ID L++ + +FA+GDC+ + G +A
Sbjct: 383 NAPREVSKNLMTKLEEQDSRRGLLIDNKLQLLGAKGSIFAIGDCTFH---PGLFPTAQVA 439
Query: 389 QVSYEQLHLFQKPSFLLAR-NW 409
E L + K ++ + + NW
Sbjct: 440 HQEGEYLAQYFKKAYKIDQLNW 461
|
|
| UNIPROTKB|G4N8E7 MGG_06276 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
Identities = 126/332 (37%), Positives = 195/332 (58%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
N K +V+LG+GW LMK +D Y+V+ +SPRN+ +FTPLL S GT+E RS+ EP
Sbjct: 119 NRKT-LVILGTGWGSVSLMKNLDVENYNVIVISPRNYFLFTPLLPSCTTGTIEHRSIMEP 177
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ I +++ ++ + + ID D VV T E++ + + ++ YD LV+ +G
Sbjct: 178 VRTILR--NKKAKVKYYEAEASSIDPDRKVVKIFD-TSEVKG-DMAETEVPYDMLVVGVG 233
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
AE +TFGI GV+E++ FL+E+ AQ IR+K++ + + + EE RLL VVVGGG
Sbjct: 234 AENATFGIPGVREHSCFLKEIGDAQLIRKKIMDCVETAAFKDQTPEEIDRLLSVVVVGGG 293
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTGVEF+GEL+DF D+++ + D VTL+EA +L SF +L Y + L +
Sbjct: 294 PTGVEFAGELADFFEEDIKKLIPEISDRFKVTLVEALPSVLPSFSKQLIEYTESTLKEEK 353
Query: 299 VRL-VRGIVKDVDSQKLILN----DGTE----VPYGLLVWSTGVGPSTLVKSL--DLPKS 347
+ + + +V+ V + + DGT+ +PYGLLVW+TG LVK L +P
Sbjct: 354 INIETKTMVQKVTDKSVEATTTRPDGTKEKRVMPYGLLVWATGNAVRPLVKDLCARIPAQ 413
Query: 348 PGGRIG--IDEWLRVPSVQDVFAVGDCS--GY 375
R G ++E+L V +D++A+GDC+ GY
Sbjct: 414 KDSRRGLAVNEYLVVQGARDIWAIGDCAVAGY 445
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O80874 | NDA2_ARATH | 1, ., 6, ., -, ., - | 0.8352 | 0.8073 | 0.6929 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh2_kg.4__968__AT2G29990.1 | annotation not avaliable (504 aa) | ||||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| fgenesh1_pm.C_scaffold_3002392 | annotation not avaliable (462 aa) | • | 0.430 | ||||||||
| scaffold_602256.1 | annotation not avaliable (365 aa) | • | • | 0.425 | |||||||
| fgenesh2_kg.6__826__AT5G08530.1 | annotation not avaliable (486 aa) | • | • | 0.414 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 436 | |||
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 1e-121 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 5e-78 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 3e-39 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 9e-24 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 1e-20 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-13 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 2e-13 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 7e-13 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 5e-12 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 2e-10 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 1e-07 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 2e-07 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 7e-07 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 1e-06 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-06 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 2e-06 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 2e-06 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 9e-06 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 1e-05 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 3e-05 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 3e-05 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 4e-05 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 5e-05 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 6e-05 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 1e-04 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 2e-04 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 6e-04 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 6e-04 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 0.001 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 0.004 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 0.004 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 359 bits (922), Expect = e-121
Identities = 149/341 (43%), Positives = 216/341 (63%), Gaps = 11/341 (3%)
Query: 56 PTKANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
T +KP VVVLG+GWAG ++ +D Y++ +SPRNHM+FTPLL T GTLEFRS
Sbjct: 4 RTARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRS 63
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+ EP+ +PA+++ P + + + +D + V C V+ F + YDKLV
Sbjct: 64 ICEPV---RPALAKLP-NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVN-TFSVPYDKLV 118
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
+A GA +TF I GV+E A FL+EV+HA+ IR++++ + + +P S EE+ RLLH VV
Sbjct: 119 VAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVV 178
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQL 294
VGGGPTGVEF+ EL+DF DVR + + VT++EA +E+L SFD LR Y +L
Sbjct: 179 VGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRL 238
Query: 295 SKSGVRLV-RGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIG 353
+ GV + + VK+V ++++L DG +P GL+VWSTGVGP L K L + K+ GRI
Sbjct: 239 RRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRIS 298
Query: 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
+D+ LRV + +VFA+GDC+ + + LP LAQV+ +Q
Sbjct: 299 VDDHLRVKPIPNVFALGDCA----ANEERPLPTLAQVASQQ 335
|
Length = 424 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 5e-78
Identities = 112/339 (33%), Positives = 166/339 (48%), Gaps = 28/339 (8%)
Query: 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP 119
K R+V+LG G+ G K + L ++ V R++ +FTPLL GTL +A P
Sbjct: 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIP 62
Query: 120 IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
+ + + + F ID D V + + ISYD LV+ALG
Sbjct: 63 LRAL---LRKSGNVQFVQGEVTDIDRDAKKVTLADLGE-----------ISYDYLVVALG 108
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
+E + FGI G E A L+ + A +RR LL + EE+ LL V+VGGG
Sbjct: 109 SETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS----QEEDDRALLTIVIVGGG 164
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSG 298
PTGVE +GEL++ + R ++ ++ + V L+EA IL F +L YA L K G
Sbjct: 165 PTGVELAGELAERLHRLLK-KFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223
Query: 299 VRLVRGI-VKDVDSQKLILNDG-TEVPYGLLVWSTGVGPSTLVKSL-DLPKSPGGRIGID 355
V ++ G V +V + L DG E+P +VW+ GV S L+K L L GR+ ++
Sbjct: 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVN 283
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
L+VP D+FA GDC+ +P AQ +++Q
Sbjct: 284 PTLQVPGHPDIFAAGDCAAV---IDPRPVPPTAQAAHQQ 319
|
Length = 405 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-39
Identities = 74/323 (22%), Positives = 116/323 (35%), Gaps = 53/323 (16%)
Query: 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS--PRNHMVFTPLLASTCVGTLEFRSVAEPIA 121
VV++G G AG + V + L + E +A +A
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 122 RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181
+ + ID V + V +I+YDKL+IA GA
Sbjct: 61 LPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETG--------REITYDKLIIATGAR 112
Query: 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241
GI GV LR V + EI L VVVGGG
Sbjct: 113 PRIPGIPGV--EVATLRGVIDSDEILELL-----------------ELPKRVVVVGGGYI 153
Query: 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDD-----RLRHYATTQLS 295
G+E + L+ VT++E + +L+ DD L L
Sbjct: 154 GLELAAALAKLGK--------------EVTVVERRDRLLARADDEISAALLEKLEKLLLG 199
Query: 296 KSGVRLVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRI 352
+ + +V +VK D + + L DG E+ +++ + G P+T L++ + G I
Sbjct: 200 VTVLLVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYI 259
Query: 353 GIDEWLRVPSVQDVFAVGDCSGY 375
+DE+LR SV ++A GD +
Sbjct: 260 VVDEYLRT-SVPGIYAAGDVAEG 281
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 70/295 (23%), Positives = 108/295 (36%), Gaps = 48/295 (16%)
Query: 86 YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDT 145
V ++P + ++ +L G + + R+ +R+ G+ F ++ GID
Sbjct: 26 VRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRL----ARQAGARFVIAEATGIDP 81
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA-------TFLR 198
D V L P +SYD L + +G+ G+ G + A FL
Sbjct: 82 DRRKVL-------LANRPP----LSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLA 130
Query: 199 EVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258
E S + VVGGG GVE + L R
Sbjct: 131 RWEALLE-----------------SADAPPGTKRLAVVGGGAAGVEIALAL--------R 165
Query: 259 QRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILN 317
+R VTLI +L F ++R L++ G+ + G V LIL
Sbjct: 166 RRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGALILA 225
Query: 318 DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
DG +P ++W+TG + LP G + +D L+ S VFA GDC
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDC 280
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 1e-20
Identities = 84/385 (21%), Positives = 130/385 (33%), Gaps = 74/385 (19%)
Query: 65 VVVLGSGWAGCRLMKGIDTSLYD----VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+V++G G AG + L ++ P+ PL + +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSL-----YVGGGIASLED 55
Query: 121 ARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179
R P +R G ID +N VV + D +I YD LV+A G
Sbjct: 56 LRYPPRFNRATGIDVRTGTEVTSIDPENKVV---LLDDG---------EIEYDYLVLATG 103
Query: 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239
A E LR A+ ++ E + VVVG G
Sbjct: 104 ARP-RPPPISDWEGVVTLRLREDAEALKGGA--------------EPPKDV---VVVGAG 145
Query: 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR-LRHYATTQLSKS 297
P G+E +R VTLIEA + D + L K
Sbjct: 146 PIGLE--------AAEAAAKR------GKKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191
Query: 298 GVRLVRGI-VKDVD-------SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP--KS 347
GV L+ G V V+ ++++ DG E+ L++ G P+ ++ + LP
Sbjct: 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLAL 251
Query: 348 PGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQ-------VSYEQLHLFQ 399
GG + +DE DV+A GD TGK AL ++ E +
Sbjct: 252 AGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGAL 311
Query: 400 KPSFLLARNWCWFFDVCSLTSILNR 424
+ LL D+C+ ++ L
Sbjct: 312 RIPGLLGTVISDVGDLCAASTGLTE 336
|
Length = 415 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 63/296 (21%), Positives = 105/296 (35%), Gaps = 78/296 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGIDT--------DNHVVHCETVTDELRTLEPWKFKISY 171
+AR + G L G+D D H V E ++ T+
Sbjct: 86 LARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTV--EVTGEDKETIT-------A 136
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
D ++IA G+ G+ + + + L L ++P L
Sbjct: 137 DNIIIATGSRPRIPPGPGIDG-----ARILDSSDA-------LFLLELP-------KSL- 176
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYA 290
V+VGGG G+EF+ + + VT++E + IL D +
Sbjct: 177 --VIVGGGYIGLEFASVFAAL---GSK-----------VTVVERGDRILPGEDPEISKEL 220
Query: 291 TTQLSKSGVRL-----VRGIVKDVDSQKLILNDG--TEVPYGLLVWSTGVGPSTLVKSLD 343
T QL K GV++ V + K D + L DG + ++ + G P+T L
Sbjct: 221 TKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT--DGLG 278
Query: 344 LPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
L G I +D+ + +V ++A+GD G P LA V+ +
Sbjct: 279 LENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGG---------PMLAHVAMAE 324
|
Length = 454 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 37/214 (17%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPGISE 224
++ SYD L+++ GA I G+ + F LR + I++ + +
Sbjct: 87 TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYI-------------D 133
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SF 282
+ K + V++GGG G+E + +R+R +VTLI + IL+ F
Sbjct: 134 KNKVE--NVVIIGGGYIGIE--------MAEALRER------GKNVTLIHRSERILNKLF 177
Query: 283 DDRLRHYATTQLSKSGV--RLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGP-STL 338
D+ + +L K + RL + +++ + G +++ +TG+ P S L
Sbjct: 178 DEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSEL 237
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
K L G I ++E + SV +++A GD
Sbjct: 238 AKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDV 270
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 90/356 (25%), Positives = 146/356 (41%), Gaps = 86/356 (24%)
Query: 62 KPRVVVLGSGWAGCRLMKGI---DTSLYD--VVCVSPR---NHMVFTPLLASTCVGTLEF 113
K ++V++G+G AG R ++ + LYD V PR N ++ + +LA
Sbjct: 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAG-------- 54
Query: 114 RSVAEPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
AE I+ + E G + ID N VV + +SYD
Sbjct: 55 EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDA-----------GRTVSYD 103
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KL+IA G+ I G L V + I DV + + +++
Sbjct: 104 KLIIATGSYPFILPIPGSD-----LPGVFVYRTI----------DDVEAMLDCARNKK-K 147
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV--TLIE------ANEILSSFDD 284
VV+GGG G+E + L D M +V V +H+ TL+E A +L
Sbjct: 148 AVVIGGGLLGLEAARGLKDLGM-EV-----TV---VHIAPTLMERQLDRTAGRLLR---- 194
Query: 285 RLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP-STL 338
+L G++++ IV + + + DGTE+P L+V + G+ P L
Sbjct: 195 -------RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL 247
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
K L + G I ++++++ S D++AVG+C+ E GK L YEQ
Sbjct: 248 AKEAGLAVNRG--IVVNDYMQT-SDPDIYAVGECA---EHRGKV--YGLVAPLYEQ 295
|
Length = 793 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 39/231 (16%)
Query: 167 FKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 225
F +YDKL+IA GA I + EN L+ + ++ L +E
Sbjct: 100 FNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELL------------KDE 147
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFD 283
E + V++G G G+E V K+ V +I+ + IL SFD
Sbjct: 148 EIKNI---VIIGAGFIGLEA-----------VEAAKHLGKN---VRIIQLEDRILPDSFD 190
Query: 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-L 338
+ +L ++GV L VK + + + ++ D E +++ +TGV P+T
Sbjct: 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEF 250
Query: 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALA 388
++ L G I +DE+ S+++++A GDC+ Y + K V LA
Sbjct: 251 LEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCATIYNIVSNKNVYVPLA 300
|
Length = 444 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 56/249 (22%), Positives = 90/249 (36%), Gaps = 71/249 (28%)
Query: 146 DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQE 205
D H V V E + + D ++IA G S I G E +E
Sbjct: 119 DAHTVE---VNGE---------RYTADHILIATGGRPSIPDIPG-AEYGITSDGFFALEE 165
Query: 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR----DVRQRY 261
+ +++ VVG G VEF+G ++ +
Sbjct: 166 LPKRV-----------------------AVVGAGYIAVEFAG-----VLNGLGSETHL-- 195
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVD-SQKLI 315
+ + L FD +R ++ K G+RL + + K+ D S L
Sbjct: 196 ----------FVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLT 245
Query: 316 LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVG 370
L DG + L+W+ G P+T L L + G I +DE+ +V ++AVG
Sbjct: 246 LEDGETLTVDCLIWAIGREPNT--DGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVG 302
Query: 371 DCSGYLEST 379
D +G +E T
Sbjct: 303 DVTGRVELT 311
|
Length = 450 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-07
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VVVGGG G+EF+ L+ VT++E + +L FD+ +
Sbjct: 3 VVVGGGYIGLEFASALAKLGS--------------KVTVVERRDRLLRGFDEEIAKILQE 48
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLILNDGTE 321
+L K+G+ + V I + D + L G
Sbjct: 49 KLEKNGIEVLLNTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 56/238 (23%), Positives = 89/238 (37%), Gaps = 50/238 (21%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVH 201
IDTD V TD RTL SYDKL++A G+ I G K+ R +
Sbjct: 80 IDTDQKQVI----TDAGRTL-------SYDKLILATGSYPFILPIPGADKKGVYVFRTIE 128
Query: 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261
I R V+GGG G+E + L + M
Sbjct: 129 DLDAIM-----------------AMAQRFKKAAVIGGGLLGLEAAVGLQNLGMD------ 165
Query: 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-----IVKDVDSQKLIL 316
V IH + L RL +L + G+ + IV + ++
Sbjct: 166 VSV---IHHAPGLMAKQLDQTAGRL---LQRELEQKGLTFLLEKDTVEIVGATKADRIRF 219
Query: 317 NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCS 373
DG+ + L+V + G+ P+ L S + I +++ ++ S D++AVG+C+
Sbjct: 220 KDGSSLEADLIVMAAGIRPNDELAVSAGIKV--NRGIIVNDSMQT-SDPDIYAVGECA 274
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 7e-07
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 166 KFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGIS-- 223
K +++ + +VI GA ++ I G+ ++ D GI
Sbjct: 114 KIELTAETIVINTGAVSNVLPIPGLADSKHVY--------------------DSTGIQSL 153
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSF 282
E RL ++GGG G+EF+G Y+ + VT+++A + IL
Sbjct: 154 ETLPERL---GIIGGGNIGLEFAG------------LYNKLGS--KVTVLDAASTILPRE 196
Query: 283 DDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
+ + A + + G+ + VK+ Q L++ + + L+++TG P+T
Sbjct: 197 EPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256
Query: 339 ---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+++ D+ + G I +D++ + SV VFAVGD +G + T
Sbjct: 257 PLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFT 299
|
Length = 438 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 29/160 (18%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSFDDRLRHYA 290
++ GGG VEF+G I R + + TLI EIL FDD +R
Sbjct: 168 SILIAGGGYIAVEFAG-----IFRGLG---------VQTTLIYRGKEILRGFDDDMRRGL 213
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
L + G+R++ I KD D + K L+ E+ +++++TG P+T L L
Sbjct: 214 AAALEERGIRILPEDSITSISKDDDGRLKATLSKHEEIVADVVLFATGRSPNT--NGLGL 271
Query: 345 PKS-----PGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G I +DE+ R S ++AVGD + + T
Sbjct: 272 EAAGVRLNDLGAIAVDEYSRT-STPSIYAVGDVTDRINLT 310
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 86/353 (24%), Positives = 151/353 (42%), Gaps = 67/353 (18%)
Query: 62 KPRVVVLGSGWAGCR----LMKGIDTSLYD--VVCVSPRNHMVFTPLLASTCVGTLEFRS 115
K R+ ++G+G G R L+ D + +D V C PR +A V + S
Sbjct: 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR--------IAYDRVHLSSYFS 54
Query: 116 --VAEPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
AE ++ ++ + G + A I+ V+H + RT + YD
Sbjct: 55 HHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIH----SSAGRT-------VFYD 103
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232
KL++A G+ I G + F V+ E D+ I E R
Sbjct: 104 KLIMATGSYPWIPPIKGSETQDCF---VYRTIE------------DLNAI-EACARRSKR 147
Query: 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VVGGG G+E +G L + + +HV ++ + + A ++ ++LR
Sbjct: 148 GAVVGGGLLGLEAAGALKNLGVE------THVIEFAPMLM--AEQLDQMGGEQLRR---- 195
Query: 293 QLSKSGVRL-----VRGIVKD-VDSQK-LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDL 344
++ GVR+ IV++ V+++K + DG+E+ +V+STG+ P L L
Sbjct: 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGL 255
Query: 345 PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPA--LAQVSYEQL 395
+P G I I++ + S D++A+G+C+ + V P +AQV+ + L
Sbjct: 256 AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHL 307
|
Length = 847 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 47/192 (24%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L L +P ++ G G G E++ S F V+ VTLI
Sbjct: 169 LSLDHLPR----------SLIIYGAGVIGCEYA---SIFAALGVK-----------VTLI 204
Query: 274 EANEILSSF-DDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
+ L SF DD + + L SGV + V + D + L G ++ L
Sbjct: 205 NTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264
Query: 328 VWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT 382
+++ G + L+L G++ ++E + +V ++AVGD G+
Sbjct: 265 LYA--NGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF------- 314
Query: 383 VLPALAQVSYEQ 394
P+LA S +Q
Sbjct: 315 --PSLASASMDQ 324
|
Length = 461 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 59/220 (26%), Positives = 90/220 (40%), Gaps = 59/220 (26%)
Query: 169 ISYDKLVIALGAEASTFGI---HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEE 225
I+ D++VIA G+ + GV+ H + I R L ++P
Sbjct: 127 ITADQVVIAAGSRPVIPPVIADSGVR--------YHTSDTIMR-------LPELPE---- 167
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLIEANE-ILSSF 282
V+VGGG EF+ HV + VT++ + +L
Sbjct: 168 ------SLVIVGGGFIAAEFA----------------HVFSALGVRVTVVNRSGRLLRHL 205
Query: 283 DDRLRHYATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
DD + T SK VRL R +V +D L L+DG+ V +L+ +TG P+
Sbjct: 206 DDDISERFTELASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNG- 264
Query: 339 VKSLDLPKS-----PGGRIGIDEWLRVPSVQDVFAVGDCS 373
LD + GR+ +DE+ R S + VFA+GD S
Sbjct: 265 -DLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVS 302
|
Length = 451 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 39/174 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
V++GGG GVEF+ + K VT+IE + IL D +
Sbjct: 174 VIIGGGVIGVEFASIFASL----------GSK----VTVIEMLDRILPGEDAEVSKVLQK 219
Query: 293 QLSKSGVRLVRG----IVKDVDSQKLILNDGTEVP-----YGLLVWSTGVGPSTL---VK 340
L K GV+++ V+ D Q N G E L+ + G P+T ++
Sbjct: 220 ALKKKGVKILTNTKVTAVEKNDDQVTYENKGGETETLTGEKVLV--AVGRKPNTEGLGLE 277
Query: 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
L + GRI +DE++R +V ++A+GD G P LA V+ +
Sbjct: 278 KLGVELDERGRIVVDEYMRT-NVPGIYAIGDV------IGG---PMLAHVASHE 321
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 43/176 (24%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATT 292
VV+GGG GVEF+ + VT++EA IL D + A
Sbjct: 176 VVIGGGYIGVEFASAYASL--------------GAEVTIVEALPRILPGEDKEISKLAER 221
Query: 293 QLSKSGVR-----LVRGIVKDVDSQKLILNDGT-----EVPYGLLVWSTGVGPSTLVKSL 342
L K G++ + + + D + L DG E Y +LV + G P+T ++L
Sbjct: 222 ALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADY-VLV-AVGRRPNT--ENL 277
Query: 343 DLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
L K+ G I +DE LR +V +++A+GD G P LA + +
Sbjct: 278 GLEELGVKTDRGFIEVDEQLRT-NVPNIYAIGDI------VGG---PMLAHKASAE 323
|
Length = 462 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 52/225 (23%)
Query: 158 ELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217
E+ L+ K + + ++IA G+ A I G KE A + S
Sbjct: 155 EVTQLDGTKLRYTAKHILIATGSRAQRPNIPG-KELA--------------------ITS 193
Query: 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277
D +S EE + VV+GGG VEF+ I R + V L E
Sbjct: 194 D-EALSLEELPK--RAVVLGGGYIAVEFAS-----IWRGMG---------ATVDLFFRKE 236
Query: 278 I-LSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWST 331
+ L FDD +R L G+ L + + K K+I + G E +++++T
Sbjct: 237 LPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFAT 296
Query: 332 GVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGD 371
G P+T K L+L G + +DE+ R ++ ++A+GD
Sbjct: 297 GRAPNT--KRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGD 338
|
Length = 499 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 32/158 (20%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI--HVTLI-EANEILSSFDDRLRH 288
V+VGGG EF +HV + VT++ + ++L D+ +
Sbjct: 171 SLVIVGGGYIAAEF----------------AHVFSALGTRVTIVNRSTKLLRHLDEDISD 214
Query: 289 YATTQLSKS-GVRLVRGIV---KDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344
T K +RL R + +D D L L+DG+ V +L+ +TG P+ LD
Sbjct: 215 RFTEIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG--DLLDA 272
Query: 345 PKS-----PGGRIGIDEWLRVPSVQDVFAVGD-CSGYL 376
+ GRI +DE+ R S + V+A+GD S Y
Sbjct: 273 EAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQ 309
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 70/272 (25%), Positives = 113/272 (41%), Gaps = 83/272 (30%)
Query: 137 LSHCA--GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA 194
H ID + VV + YDKLV+A GA A I G
Sbjct: 76 FPHTWVTDIDAEAQVVKSQGNQ------------WQYDKLVLATGASAFVPPIPG----- 118
Query: 195 TFLREVHHAQEIRRKLLLNLMLSDVPGISEEE----KSRLL---HCVVVGGGPTGVEFSG 247
R+L+L L S++E +++L +VVGGG G E +
Sbjct: 119 -------------RELMLTLN-------SQQEYRAAETQLRDAQRVLVVGGGLIGTELAM 158
Query: 248 ELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSS-----FDDRLRHYATTQLSKSGVRL 301
+L R + VTL++ A +L+S RL+H +L++ GV L
Sbjct: 159 DLC----RAGK----------AVTLVDNAASLLASLMPPEVSSRLQH----RLTEMGVHL 200
Query: 302 -----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGID 355
++G+ K + L+ G + ++ + G+ P+T L + L + G I +D
Sbjct: 201 LLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRG--IVVD 258
Query: 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPAL 387
+L+ S D++A+GDC+ E G+ VLP L
Sbjct: 259 SYLQT-SAPDIYALGDCA---EINGQ-VLPFL 285
|
Length = 377 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294
+VGGG +EF+G ++ +K +HV I ++L FD+ +R + Q+
Sbjct: 257 IVGGGYIALEFAG------------IFNGLKSDVHV-FIRQKKVLRGFDEEVRDFVAEQM 303
Query: 295 SKSGVRL-----VRGIVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK-- 346
S G+ + I+K D S L N GT + ++++TG P+T K+L L +
Sbjct: 304 SLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT--KNLGLEEVG 361
Query: 347 ---SPGGRIGIDEWLRVPSVQDVFAVGD 371
G I +DE+ R SV ++AVGD
Sbjct: 362 VKMDKNGAIEVDEYSRT-SVPSIWAVGD 388
|
Length = 558 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 6e-05
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 25/166 (15%)
Query: 224 EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI-EANEILSSF 282
+E R+L VGGG VEF+G + + R + VTL N IL F
Sbjct: 184 DEPPRRVL---TVGGGFISVEFAGIFNAYKPRGGK-----------VTLCYRNNMILRGF 229
Query: 283 DDRLRHYATTQLSKSGVRLVRG-----IVKDVD-SQKLILNDGTEVPYGLLVWSTGVGPS 336
D LR T QL +G+ ++ + + D S+ + G + +++ + G P
Sbjct: 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289
Query: 337 TLVKSLD---LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
T LD + + G I +DE+ R +V +++A+GD + + T
Sbjct: 290 TQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTDRVMLT 334
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 46/223 (20%)
Query: 168 KISYDKLVIALGAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
+D+L IA GA A + + E LR A +R L + E
Sbjct: 98 SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL-------------QPE 144
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE--ANEILSSFDD 284
+S V+VG G G+E + S + VT+IE A + +
Sbjct: 145 RS----VVIVGAGTIGLELAA--------------SATQRRCKVTVIELAATVMGRNAPP 186
Query: 285 RLRHYATTQLSKSGVR--LVRGIVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS---T 337
++ Y + ++GVR L I VD +K L L G + ++++ G+G S
Sbjct: 187 PVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIY--GIGISANDQ 244
Query: 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTG 380
L + +L + G I IDE R +FA GD + G
Sbjct: 245 LAREANLDTANG--IVIDEACRT-CDPAIFAGGDVAITRLDNG 284
|
Length = 396 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 39/156 (25%), Positives = 68/156 (43%), Gaps = 24/156 (15%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG G VE +G L +H+ +I +L SFD + T +
Sbjct: 170 VIVGAGYIAVELAGVLHGLGSE------THL-------VIRHERVLRSFDSMISETITEE 216
Query: 294 LSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEVP-YGLLVWSTGVGPSTLVKSLD--- 343
K G+ + + K V+ + +I DG + L+W+ G P+T L+
Sbjct: 217 YEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVG 276
Query: 344 LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ + G+I +DE+ +V ++A+GD G +E T
Sbjct: 277 IKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELT 311
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 31/152 (20%), Positives = 63/152 (41%), Gaps = 27/152 (17%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
+ G G VE ++ + YI N +L FD+ + +
Sbjct: 241 GIAGSGYIAVELINVVNRLGA----------ESYIFA---RGNRLLRKFDETIINELEND 287
Query: 294 LSKSGVRLV-RGIVKDVDSQK------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP- 345
+ K+ + ++ V++++ K + + + +++ G P+T + L+L
Sbjct: 288 MKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNT--EDLNLKA 345
Query: 346 ---KSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
K+P G I +D+ R SV+ ++AVGDC
Sbjct: 346 LNIKTPKGYIKVDDNQRT-SVKHIYAVGDCCM 376
|
Length = 561 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 41/160 (25%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATT 292
V+VGGG G+E++ L+DF V VT++EA + IL + D L
Sbjct: 184 VIVGGGVIGLEWASMLADF---GVE-----------VTVVEAADRILPTEDAELSKEVAR 229
Query: 293 QLSKSGVRLVRG---------------IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L K GVR+V G IV + + ++ L +LV S G P+T
Sbjct: 230 LLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADK-----VLV-SVGRRPNT 283
Query: 338 L---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+++ D+ GG I ID++ + + ++A+GD G
Sbjct: 284 EGIGLENTDIDVE-GGFIQIDDFCQT-KERHIYAIGDVIG 321
|
Length = 472 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 50/250 (20%), Positives = 79/250 (31%), Gaps = 72/250 (28%)
Query: 150 VHCETVTDELRTLEPWKFKISYDK-------LVIALGAEASTFGIHGVKENATFLREVHH 202
V E LE FK+ DK ++IA GA A G+ G +E + V +
Sbjct: 76 VEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEF--EGKGVSY 133
Query: 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF---------- 252
+ K VV+GGG + VE + LS
Sbjct: 134 --------------CATCDGFFKGK----DVVVIGGGDSAVEEALYLSKIAKKVTLVHRR 175
Query: 253 -------IMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
I+ + ++ ++ + + E GV L
Sbjct: 176 DEFRAEEILVERLKKNVKIEVLTNTVVKEILGD----------------DVEGVVLKNV- 218
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
+K + DG + G L + L+K L + G I +DE + SV
Sbjct: 219 ---KGEEKELPVDGVFIAIGHLP------NTELLKGLGV-LDENGYIVVDEEMET-SVPG 267
Query: 366 VFAVGDCSGY 375
+FA GD +
Sbjct: 268 IFAAGDVADK 277
|
Length = 305 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 33/161 (20%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYA 290
V+GGG GVE + Q ++ + VT+++ ++ +L + +
Sbjct: 168 SLAVIGGGAIGVELA------------QAFARLG--SEVTILQRSDRLLPREEPEISAAV 213
Query: 291 TTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYG-----LLVWSTGVGPSTLVKS 341
L++ G+ +V VK V + K+I + LLV +TG P+T
Sbjct: 214 EEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLV-ATGRRPNT--DG 270
Query: 342 LDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377
L L K G I +DE LR S ++A GD +G L+
Sbjct: 271 LGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQ 310
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 47/188 (25%), Positives = 71/188 (37%), Gaps = 55/188 (29%)
Query: 219 VPGISEEEKSRLL-------------HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265
+PG+ RLL V+GGG G+E LS V+
Sbjct: 145 IPGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRL---GVK------- 194
Query: 266 DYIHVTLIEANE-ILSSFDDRLRHYATTQLSK---------------SGVRLVRGIVKDV 309
VT+ E + IL D + A LSK SG V + K
Sbjct: 195 ----VTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGG 250
Query: 310 DSQKLILNDGTEVPYGLLVWSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDV 366
++ + E Y +LV +TG P+T L +++ + GR +DE + SV +
Sbjct: 251 KTETI------EADY-VLV-ATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGI 301
Query: 367 FAVGDCSG 374
+A GD +G
Sbjct: 302 YAAGDVNG 309
|
Length = 460 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 436 | |||
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 99.98 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.98 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.98 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.97 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.96 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.96 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.96 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.95 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.95 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.95 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.95 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 99.94 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.91 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.91 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.9 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.9 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.88 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.87 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.84 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.82 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.8 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.79 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.77 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.73 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.73 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.7 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.55 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.3 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.25 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.14 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.13 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.99 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.93 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.91 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.9 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.86 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.84 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.84 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.82 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.81 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.8 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.78 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.76 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.75 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.75 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.74 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.74 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 98.73 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.73 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.72 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.71 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.71 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.7 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.7 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.7 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.7 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.68 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.68 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.65 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.64 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.64 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.64 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.64 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.64 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.64 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.63 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.63 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.62 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.61 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.6 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.6 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.59 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.59 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.57 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.57 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.56 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.56 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.55 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.55 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.55 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.55 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.55 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.54 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.53 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.52 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.52 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.52 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.52 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.52 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.49 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.49 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.48 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.48 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.47 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.47 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.46 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.46 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.45 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.45 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.45 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.44 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.44 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.43 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.43 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.43 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.43 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.42 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.42 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.41 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.41 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.4 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.4 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.39 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.39 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.39 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.39 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.37 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.36 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.36 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.36 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.34 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.34 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.33 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.33 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.33 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.33 | |
| PLN02985 | 514 | squalene monooxygenase | 98.33 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.3 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.28 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.28 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.27 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.27 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.26 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.26 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.25 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.25 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.25 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.23 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.23 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.23 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 98.23 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.23 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.23 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.23 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.22 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.22 | |
| PLN02507 | 499 | glutathione reductase | 98.22 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.21 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.19 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.19 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.18 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.16 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 98.16 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 98.15 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.15 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.15 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 98.14 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.13 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.11 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.11 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.1 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.1 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 98.09 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.09 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.08 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.08 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.08 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.07 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.07 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 98.06 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.05 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.04 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 98.04 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.01 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.0 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.0 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.97 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.97 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.95 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.92 | |
| PLN02546 | 558 | glutathione reductase | 97.92 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.91 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.88 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.88 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.88 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.87 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.86 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.86 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.85 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.85 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.83 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.83 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.82 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.81 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.81 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.8 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 97.79 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.79 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.79 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.79 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.78 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 97.78 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.78 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.77 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.75 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.74 | |
| PLN02568 | 539 | polyamine oxidase | 97.74 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.74 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.73 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.73 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.73 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.73 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.73 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.72 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.72 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.71 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.71 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.7 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.7 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.69 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 97.69 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.68 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.67 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.67 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.66 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.66 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.66 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.66 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.64 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.63 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 97.61 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.61 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.58 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.57 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 97.56 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.55 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.55 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.54 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.54 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.53 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.53 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.52 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.52 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.52 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.51 | |
| PLN02676 | 487 | polyamine oxidase | 97.51 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 97.51 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.51 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.51 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.51 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.5 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.5 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.49 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.49 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.48 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.48 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.47 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.47 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.46 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.45 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.44 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.44 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.44 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.42 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.41 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.41 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.41 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.4 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.39 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.39 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.39 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.39 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.39 | |
| PLN02612 | 567 | phytoene desaturase | 97.36 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.36 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 97.36 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.35 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.35 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.33 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.32 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 97.32 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.31 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.31 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 97.3 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.3 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.3 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.3 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.29 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.27 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 97.25 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 97.25 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.24 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 97.23 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.23 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.21 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.21 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.21 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.18 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 97.18 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.17 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 97.16 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.16 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.16 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.16 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 97.16 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.15 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.14 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.13 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.11 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 97.11 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.1 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.09 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 97.08 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.08 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.07 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 97.07 | |
| PLN03000 | 881 | amine oxidase | 97.06 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.05 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.04 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.04 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.04 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 97.04 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.04 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.03 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.03 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.02 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 96.99 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 96.97 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 96.96 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.94 | |
| PLN02976 | 1713 | amine oxidase | 96.93 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 96.91 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.91 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.91 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 96.9 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 96.88 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.88 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.87 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 96.86 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.84 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 96.84 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.83 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 96.78 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.78 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 96.77 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 96.75 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 96.74 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.73 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.68 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 96.68 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 96.66 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 96.63 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.61 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 96.61 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.59 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.58 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.57 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.55 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.54 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 96.52 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.51 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.5 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.5 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.47 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.45 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.45 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.45 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 96.44 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.39 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 96.38 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 96.38 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 96.37 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.35 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.35 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.33 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.32 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.28 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.27 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 96.21 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 96.2 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 96.13 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 96.12 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.11 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 96.07 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 96.0 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 95.99 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 95.98 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 95.97 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.96 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 95.88 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 95.86 | |
| COG1206 | 439 | Gid NAD(FAD)-utilizing enzyme possibly involved in | 95.84 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.82 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 95.8 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 95.8 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 95.76 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 95.66 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 95.63 | |
| KOG0042 | 680 | consensus Glycerol-3-phosphate dehydrogenase [Ener | 95.62 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 95.6 | |
| PLN02985 | 514 | squalene monooxygenase | 95.58 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 95.53 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.46 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.4 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.39 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 95.38 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 95.31 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 95.27 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.25 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.24 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.17 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 95.17 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 95.16 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.15 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.13 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 95.06 | |
| KOG3855 | 481 | consensus Monooxygenase involved in coenzyme Q (ub | 95.0 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 94.89 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.85 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 94.8 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 94.76 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 94.62 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 94.58 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 94.55 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.46 | |
| KOG1238 | 623 | consensus Glucose dehydrogenase/choline dehydrogen | 94.43 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 94.39 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 94.35 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 94.22 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.2 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.13 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 94.03 |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=397.18 Aligned_cols=326 Identities=34% Similarity=0.535 Sum_probs=285.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.+++|||||||++|+.+|..|.+.. .+|+|||+.+++.|.|+++....|..+......++.... ....++.|+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~---~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALL---RKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHh---cccCceEEEEE
Confidence 3578999999999999999999864 889999999999999999999999999888877777653 22346999999
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|++||++++.|.+. ++. .+.||+||||+|+.+..+.+||..++.+.+++++++.++++++...+....
T Consensus 79 ~V~~ID~~~k~V~~~---~~~--------~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLA---DLG--------EISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeC---CCc--------cccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999886 333 799999999999999999999999999999999999999999976666555
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhc
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (436)
.+.-+ +...+++|+|||++|+|+|.+|+++..+...+ +...+.+.+|+|+++. .++|.+++++++.+++.|++.
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 33200 13347999999999999999999988655555 4433346899999995 689999999999999999999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcE-EecceEEEecCCCCchhccc-CCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
||++++++ |++++++.|++++|.+ |++|++||++|.+++++.++ .+++.|..|++.||+++|++++|+|||+|||+.
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 99999996 9999999999999985 99999999999999999998 488889999999999999999999999999999
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
.+++ .+.|+.++.|.+||+.+|+||.....+
T Consensus 303 ~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 303 VIDP---RPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCC---CCCCChhHHHHHHHHHHHHHHHHHhcC
Confidence 8654 456999999999999999999865544
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=381.16 Aligned_cols=331 Identities=44% Similarity=0.750 Sum_probs=276.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
+.+++|||||||+||+.+|..|.+.+++|+|||+++++.|.|.++....|.........++... ....++.++.++
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~~~~~i~~~ 83 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPA----LAKLPNRYLRAV 83 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHH----hccCCeEEEEEE
Confidence 3467999999999999999999887899999999999999999988888776665554444333 334578999999
Q ss_pred eEeEeCCCCEEEEEEe-------cCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETV-------TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 140 v~~id~~~~~v~~~~~-------~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (436)
|++||++++.+.+... .++. +++||+||||||+.+..+++||.+++++..++++++.++++.+..
T Consensus 84 V~~Id~~~~~v~~~~~~~~~~~~~~g~--------~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~ 155 (424)
T PTZ00318 84 VYDVDFEEKRVKCGVVSKSNNANVNTF--------SVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQ 155 (424)
T ss_pred EEEEEcCCCEEEEecccccccccCCce--------EecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999887321 1233 799999999999999999999998888899999999999888765
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYAT 291 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~ 291 (436)
++.....|..+.+.+++.++++|||+|++|+|+|.+|+++......+.++...++.+|+|+++. .+++.+++++.+.++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~ 235 (424)
T PTZ00318 156 CIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQ 235 (424)
T ss_pred HHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHH
Confidence 5443333332233333445899999999999999999987755555555555667999999985 678889999999999
Q ss_pred HHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
+.|++.||+++.++ |.+++++.|++++|+++++|++|+++|.+|+++++.++++.+++|+|.||+++|++++|||||+|
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiG 315 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALG 315 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEe
Confidence 99999999999885 99999999999999999999999999999998888899998889999999999988999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+. .+.++++..|++||..+|+||....
T Consensus 316 D~a~~~~----~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 316 DCAANEE----RPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred ccccCCC----CCCCCchHHHHHHHHHHHHHHHHHh
Confidence 9998632 1247889999999999999998654
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=360.23 Aligned_cols=335 Identities=50% Similarity=0.819 Sum_probs=303.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
....+++|||+|.|.+|.+.+..|....++|+||+|.+++.|+|+++..+.|..+.+++.+++..+... ...++.+++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~--k~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK--KNGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc--cCCCceEEe
Confidence 345678999999999999999999999999999999999999999999999999999999998887542 223788999
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhcccc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
.+.+.+|++.+.+.++....+.. .+++.+.|||||+|+|+.++.+.|||..++.+.++..+++.+++.++..+++..
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~~---~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADSS---DKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCCC---cceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999987655431 446689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHh
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (436)
..|++.++.+++..++||||||++|+|+|.+|+.+..+++++.|++.+...+|||++.. .+|+.|+..+.++.++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999995 58999999999999999999
Q ss_pred cCCEEEecc-eEEEeCCeEEEcCC----cEEecceEEEecCCCCchhcccCCCCCCCCC--cEEeCCCCCCCCCCCEEEe
Q 013810 297 SGVRLVRGI-VKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G--~i~vd~~~~~t~~~~Vya~ 369 (436)
.+|++..++ |+.+++..+..+.+ +++++.+++|++|..|.++.+.+....++.| .+.||++||+.+.+||||+
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 999999995 99999988877654 5799999999999999988777766667777 7999999999999999999
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
|||+..+. .+++++.|.+||.++|+++.
T Consensus 366 GDca~~~~------~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 366 GDCADQRG------LKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred cccccccc------CccHHHHHHHHHHHHHHHHH
Confidence 99994322 35699999999999999885
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=348.16 Aligned_cols=323 Identities=18% Similarity=0.243 Sum_probs=252.8
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||++||..|++. +++|+|||+++++.|.+ .++....+.....+. .+......+....++.++. +
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~--~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKY--ALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHH--cccCCHHHHHHhCCCEEEeCC
Confidence 5899999999999999999875 67899999999888874 344333332221110 0111112233456788765 6
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|++||++++.|.+.+..+++ ..++.||+||||||++|+.|++++ +++++.+++.++..+.+.+..
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~------~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~------ 145 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 145 (438)
T ss_pred EEEEEECCCCEEEEEECCCCc------EEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh------
Confidence 999999999999887532222 125789999999999998877654 567778888888887766521
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhc
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (436)
..+++++|||+|++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.
T Consensus 146 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~ 202 (438)
T PRK13512 146 ---------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 202 (438)
T ss_pred ---------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHhc
Confidence 12348999999999999999998766 899999985 567888999999999999999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
||+++.+. +++++...+++++|+++++|.|++|+|++|+ ++++..+++++++|+|.||+++| |++|||||+|||+..
T Consensus 203 gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~~~ 281 (438)
T PRK13512 203 EIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFE-TNVPNIYAIGDIITS 281 (438)
T ss_pred CCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcc-cCCCCEEEeeeeEEe
Confidence 99999985 9999888888888989999999999999999 68888899988889999999999 899999999999975
Q ss_pred cc-CCCCccCCccHHHHHHHHHHHHhhhhhhc---------CCceeeecchhHHHHHHHh
Q 013810 376 LE-STGKTVLPALAQVSYEQLHLFQKPSFLLA---------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 376 ~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~---------~~~~~~~~~~~~~~~~~~~ 425 (436)
+. ..+.+..+++++.|.+||+.+|+||.... .+++.++++.+.++|++..
T Consensus 282 ~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlte~ 341 (438)
T PRK13512 282 HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPN 341 (438)
T ss_pred eeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCCHH
Confidence 33 23444446788899999999999997532 2245578888888886554
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=335.91 Aligned_cols=306 Identities=23% Similarity=0.369 Sum_probs=248.0
Q ss_pred cEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
+|||||||+||+.+|..|++ .+++|+|||+++++.|.+.++....|.....++..++.+ +....++.++.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRR----LARQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHH----HHHhcCCEEEEEEE
Confidence 59999999999999999964 468999999999999988777666665444444333332 24456899999999
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (436)
+.+|++++.|.+. +|+ ++.||+||||||+.+..|++||..++++.+++.+++....+.+..++...
T Consensus 77 ~~id~~~~~V~~~---~g~--------~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (364)
T TIGR03169 77 TGIDPDRRKVLLA---NRP--------PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP--- 142 (364)
T ss_pred EEEecccCEEEEC---CCC--------cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC---
Confidence 9999998888764 565 79999999999999999999997788888888888887666553322111
Q ss_pred CCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCE
Q 013810 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (436)
Q Consensus 221 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (436)
...++|+|||+|++|+|+|..|+++... .....+|+++..+.+++.+++++.+.+.+.|++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 1234899999999999999999865410 0112589999556677788889999999999999999
Q ss_pred EEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCC
Q 013810 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379 (436)
Q Consensus 301 i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~ 379 (436)
++.+. +.+++.+.+.+.+|+++++|.+++|+|.+|++++...+++.+++|++.||+++|.+++|||||+|||+..+..
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~- 286 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDA- 286 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCC-
Confidence 99984 9999888899999999999999999999999877778888888999999999995599999999999976421
Q ss_pred CCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 380 GKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 380 ~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.++.+..|++||+.+|+||....
T Consensus 287 ---~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 287 ---PRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred ---CCCCchHHHHHhHHHHHHHHHHHh
Confidence 236778899999999999997654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=333.26 Aligned_cols=301 Identities=19% Similarity=0.285 Sum_probs=236.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhhh-hhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
.++|||||||+||++||..|++.++ +|+||++++++.|. |.+.. ...+... .. .......+....++.++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~-~~----~~~~~~~~~~~~~i~~~~ 77 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSP-QL----QQVLPANWWQENNVHLHS 77 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCc-cc----cccCCHHHHHHCCCEEEc
Confidence 4689999999999999999999876 69999999887774 43432 2222211 11 001112233456888887
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+ .|+.+|.+.+.+.+. +|. .+.||+||||||++|+.+++++.. ++++++++..++..+.+.+
T Consensus 78 g~~V~~id~~~~~v~~~---~g~--------~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~----- 141 (396)
T PRK09754 78 GVTIKTLGRDTRELVLT---NGE--------SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVL----- 141 (396)
T ss_pred CCEEEEEECCCCEEEEC---CCC--------EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHh-----
Confidence 6 789999988887664 565 799999999999999888776653 6678888888988887765
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~ 293 (436)
..+++++|||+|++|+|+|..|.+.+ .+|+++++. .+++ .+++...+.+.+.
T Consensus 142 ------------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 195 (396)
T PRK09754 142 ------------QPERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQR 195 (396)
T ss_pred ------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHHH
Confidence 23358999999999999999998766 899999985 4554 4678888889999
Q ss_pred HHhcCCEEEecc-eEEEeCC---eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 294 LSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~~---~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
+++.||+++.+. +++++.+ .+.+.+|+++++|.|++++|.+|+ .+++..+++.+ +.|.||+++| |+.|||||
T Consensus 196 l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~-ts~~~IyA 272 (396)
T PRK09754 196 HQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACR-TCDPAIFA 272 (396)
T ss_pred HHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCc-cCCCCEEE
Confidence 999999999984 8888643 356788999999999999999999 47777888754 4599999999 89999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-----CCceee
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-----RNWCWF 412 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-----~~~~~~ 412 (436)
+|||+..+..+|......++..|..||+.||+||.... .+++|.
T Consensus 273 ~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~ 321 (396)
T PRK09754 273 GGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWS 321 (396)
T ss_pred ccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEE
Confidence 99999865545555556789999999999999997543 356665
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=330.91 Aligned_cols=321 Identities=20% Similarity=0.278 Sum_probs=245.7
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||++||..|++.+ .+|+|||+++++.|.+. ++....+.... ...+...........++.++. .
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gv~~~~~~ 77 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDD---PNTMIARTPEEFIKSGIDVKTEH 77 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCC---HHHhhcCCHHHHHHCCCeEEecC
Confidence 37999999999999999999864 58999999999877642 22222221111 001111111223345788764 5
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeee--ccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~--~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+|+.+|.+.+.+.+....++. .+. ||+||||||++|..|++||.+ +++++.+++.++.++.+.+..
T Consensus 78 ~V~~id~~~~~v~~~~~~~~~--------~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~--- 146 (444)
T PRK09564 78 EVVKVDAKNKTITVKNLKTGS--------IFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD--- 146 (444)
T ss_pred EEEEEECCCCEEEEEECCCCC--------EEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---
Confidence 899999999988886433343 455 999999999999999999986 677888888888877776521
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~ 293 (436)
..+++|+|||+|++|+|+|..+.+.+ .+|+++++. .+++ .+++++.+.+.+.
T Consensus 147 ------------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~ 200 (444)
T PRK09564 147 ------------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEE 200 (444)
T ss_pred ------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHH
Confidence 22358999999999999999998765 899999985 4555 5789999999999
Q ss_pred HHhcCCEEEecc-eEEEeCCe---EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 294 LSKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
+++.||+++.++ +.+++.+. ....++.++++|.+++|+|+.|+ ++++..+++++++|+|.||+++| |+.|||||
T Consensus 201 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~-t~~~~IyA 279 (444)
T PRK09564 201 LRENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGE-TSIENIYA 279 (444)
T ss_pred HHHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcc-cCCCCEEE
Confidence 999999999985 88886432 12235557999999999999999 68899999888889999999999 89999999
Q ss_pred ecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcCC--------ceeeecchhHHHHHHH
Q 013810 369 VGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLARN--------WCWFFDVCSLTSILNR 424 (436)
Q Consensus 369 ~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--------~~~~~~~~~~~~~~~~ 424 (436)
+|||+..+. ..+++.++++++.|.+||+.+|+||...... ...+++..+.++|++.
T Consensus 280 ~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~ 344 (444)
T PRK09564 280 AGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTE 344 (444)
T ss_pred eeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCH
Confidence 999998755 3455556789999999999999999854321 2336777777777554
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=346.18 Aligned_cols=292 Identities=21% Similarity=0.375 Sum_probs=237.3
Q ss_pred CCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
+++|||||+|+||+.+|..|++ .+++|+||++++++.|.+. ++....+ ....++ ......+....++.++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l----~~~~~~~~~~~gI~~~ 77 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEEL----SLVREGFYEKHGIKVL 77 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHc----cCCCHHHHHhCCCEEE
Confidence 3589999999999999999975 3579999999999887653 3333322 222222 2222233455789998
Q ss_pred Ee-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhc
Q 013810 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
.+ .|+.+|++.+.|.+. +|. ++.||+||||||+.|+.|++||.+ .+++.+++++++..+...+
T Consensus 78 ~g~~V~~Id~~~~~V~~~---~G~--------~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~---- 142 (847)
T PRK14989 78 VGERAITINRQEKVIHSS---AGR--------TVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA---- 142 (847)
T ss_pred cCCEEEEEeCCCcEEEEC---CCc--------EEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH----
Confidence 86 699999988777653 565 799999999999999999999986 4577788999988887654
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATT 292 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~ 292 (436)
..+++++|||+|++|+|+|..|.+++ .+|+++++.+ +++ .++++..+.+.+
T Consensus 143 -------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~ 195 (847)
T PRK14989 143 -------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRR 195 (847)
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHH
Confidence 23458999999999999999999876 8999999964 554 589999999999
Q ss_pred HHHhcCCEEEecc-eEEEeCC------eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~------~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
.|++.||+++.+. ++++..+ .+.++||+++++|+||+++|++|+ .+++..|++++++|+|.||+++| |+.|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~-Ts~p 274 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQ-TSDP 274 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCc-CCCC
Confidence 9999999999995 8888532 467889999999999999999999 57888999999999999999999 8999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+|||+|||+..... ...++..|..||+.||.||....
T Consensus 275 ~IYAiGD~a~~~~~-----~~gl~~~a~~~a~vaa~~i~g~~ 311 (847)
T PRK14989 275 DIYAIGECASWNNR-----VFGLVAPGYKMAQVAVDHLLGSE 311 (847)
T ss_pred CEEEeecceeEcCc-----ccccHHHHHHHHHHHHHHhcCCC
Confidence 99999999986321 13478899999999999998643
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=320.74 Aligned_cols=307 Identities=23% Similarity=0.289 Sum_probs=232.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh---------------------cCc------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGT------LEF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~------~~~ 113 (436)
.++|+|||||||||..||.++++.|.+|.|||++..++......+.. .|. .++
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 46999999999999999999999999999999985433221100000 000 011
Q ss_pred ccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+.. .+......+.+..+++++.+...-++ .+++.+... +.+ ++.+|++|||||++|+.|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~~~--------~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-DKE--------TITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-Cce--------EEEeCEEEEcCCCCCcCCC
Confidence 11111 11111122344567888888776665 567766532 122 8999999999999999999
Q ss_pred CCCCccc-cccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++|+++. ++...+. +.+..+|. +++|||||++|+|+|..++++|
T Consensus 152 ~~~~~~~~~~~s~~~-------------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSDA-------------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechhh-------------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 9998643 3333332 12235665 9999999999999999999998
Q ss_pred CccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCc--EEecceEEEecCCCCc-
Q 013810 266 DYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPS- 336 (436)
Q Consensus 266 ~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~--~i~~D~vi~a~G~~p~- 336 (436)
.+||++++ +.+++.+|+++++.+.+.|++.|+++++++ +++++.+ .+.+++|+ ++++|.+++|+|++||
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 99999999 578999999999999999999899999995 7777543 36667776 7999999999999999
Q ss_pred h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh-h-------c
Q 013810 337 T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL-L-------A 406 (436)
Q Consensus 337 ~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~-~-------~ 406 (436)
+ + +++.|+++|++|+|.||..++ |++|||||+|||++. +.+++.|..||++||+||+. . .
T Consensus 275 ~~LgLe~~Gv~~~~rg~I~VD~~~~-Tnvp~IyA~GDV~~~---------~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~ 344 (454)
T COG1249 275 DGLGLENAGVELDDRGFIKVDDQMT-TNVPGIYAIGDVIGG---------PMLAHVAMAEGRIAAENIAGGKRTPIDYRL 344 (454)
T ss_pred CCCChhhcCceECCCCCEEeCCccc-cCCCCEEEeeccCCC---------cccHhHHHHHHHHHHHHHhCCCCCcCcccC
Confidence 3 3 788899999999999996666 889999999999887 66999999999999999985 1 2
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.|++-+-+..+.+++++..
T Consensus 345 iP~~ift~Peia~VGlte~ 363 (454)
T COG1249 345 IPSVVFTDPEIASVGLTEE 363 (454)
T ss_pred CCEEEECCCcceeeeCCHH
Confidence 3567777777777776543
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=312.56 Aligned_cols=290 Identities=22% Similarity=0.333 Sum_probs=227.4
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCccee-cchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-e
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-S 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (436)
++|||||||+||+++|..|++. ..+|+||++++...| .|.+.....+.....++.. .....+.+..++.++. .
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~gv~~~~~~ 79 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTR---QSAGEFAEQFNLRLFPHT 79 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhc---CCHHHHHHhCCCEEECCC
Confidence 5899999999999999999874 457999999987666 4555544444322222211 1112334556888875 5
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|+++|.+.+.+.+ ++. .+.||+||||||+.|..|++||.+. ++..+++.++..+.+.+
T Consensus 80 ~V~~id~~~~~v~~----~~~--------~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~-------- 138 (377)
T PRK04965 80 WVTDIDAEAQVVKS----QGN--------QWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL-------- 138 (377)
T ss_pred EEEEEECCCCEEEE----CCe--------EEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh--------
Confidence 89999998877764 444 7999999999999999999999754 77778888877766654
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHHHh
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSK 296 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l~~ 296 (436)
...++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++. +++.+.+.+.+.+++
T Consensus 139 ---------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 195 (377)
T PRK04965 139 ---------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLTE 195 (377)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHHh
Confidence 23358999999999999999998765 899999985 45544 578888899999999
Q ss_pred cCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 297 SGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.||+++.+. +.+++.+ .+.+.+|+++++|.||+|+|.+|+ .+++.++++.+ +| |.||+++| |+.|||||+|
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~-ts~~~VyA~G 272 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQ-TSAPDIYALG 272 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCcc-cCCCCEEEee
Confidence 999999884 8888653 367789999999999999999999 57788888875 45 99999999 8999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
||+..+. . ....+..|..||+.+|+||.....
T Consensus 273 D~a~~~~---~--~~~~~~~a~~~g~~~a~n~~g~~~ 304 (377)
T PRK04965 273 DCAEING---Q--VLPFLQPIQLSAMALAKNLLGQNT 304 (377)
T ss_pred ecEeECC---c--eeehHHHHHHHHHHHHHHhcCCCc
Confidence 9998632 1 123567799999999999986543
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=319.58 Aligned_cols=301 Identities=20% Similarity=0.235 Sum_probs=221.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc-------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT-------LEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~-------~~~~ 114 (436)
++||+||||||||++||..|++.|.+|+|||+.. ++......+.. .|. .++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4899999999999999999999999999999853 32211000000 000 0000
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC-C
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~-~ 186 (436)
.+.. .+...........++.++.++....+ .+.+.+ ++. .+.||+||||||++|+.| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v----~~~--------~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTVEV----NGR--------DYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 01111112233457888888665433 445544 344 789999999999999998 8
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
+||.+ ...+ .++... +...| ++++|||+|++|+|+|..|+.++
T Consensus 147 i~g~~-~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGTD---SDGFFA----------LEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeEc---HHHhhC----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 1111 111111 11223 39999999999999999999876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCC-cEEecceEEEecCCCCch-
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPST- 337 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g-~~i~~D~vi~a~G~~p~~- 337 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +++++.+ .+++++| +++++|.|++++|++|+.
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999985 57888999999999999999999999994 8888632 3566677 579999999999999993
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------c
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------A 406 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~ 406 (436)
+ ++..+++++++|+|.||+++| |++|||||+|||++. +..++.|.+||+.||+||... .
T Consensus 269 ~l~l~~~g~~~~~~G~i~vd~~~~-T~~p~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 338 (450)
T TIGR01421 269 GLGLENVGIKLNEKGQIIVDEYQN-TNVPGIYALGDVVGK---------VELTPVAIAAGRKLSERLFNGKTDDKLDYNN 338 (450)
T ss_pred cCCccccCcEECCCCcEEeCCCCc-CCCCCEEEEEecCCC---------cccHHHHHHHHHHHHHHHhcCCCCCccCccc
Confidence 3 577889999999999999999 899999999999986 678899999999999999732 2
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.+++.+.+..+..++++..
T Consensus 339 ~p~~~f~~p~ia~vGlte~ 357 (450)
T TIGR01421 339 VPTVVFSHPPIGTIGLTEK 357 (450)
T ss_pred CCeEEeCCCceEEEeCCHH
Confidence 4566667777777776654
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=331.56 Aligned_cols=288 Identities=21% Similarity=0.375 Sum_probs=233.5
Q ss_pred EEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 65 VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
|||||||+||++||..|++ .+++|+|||+++++.|.+ .++....|.....++..... .+....++.++.+ +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~----~~~~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK----DWYEKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCH----HHHHHCCCEEEcCCe
Confidence 6999999999999999876 357899999999987763 45555555444433322222 2344568999876 8
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
|+.||++.+.+.+. +|. ++.||+||||||+.|+.|++||.+ .+++.+++++++..+.+.+
T Consensus 77 V~~Id~~~k~V~~~---~g~--------~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVITD---AGR--------TLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEEC---CCc--------EeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 99999998887764 565 799999999999999999999986 5678888898888877654
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHHHHHh
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSK 296 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~~l~~ 296 (436)
...++++|||+|++|+|+|..|.+.+ .+|+++++.+ +++ .+++...+.+.+.+++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 23458999999999999999999876 8999999854 443 5788889999999999
Q ss_pred cCCEEEecc-eEEEeC----CeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 297 SGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.||+++.++ ++++.. ..|.++||+++++|+||+++|++|+ .+++.++++.+ |.|.||+++| |+.|||||+|
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~-Ts~p~IyA~G 271 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQ-TSDPDIYAVG 271 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCcc-cCCCCEEEee
Confidence 999999995 888864 2477899999999999999999999 57778888776 5699999999 8999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+.. ...++..|..||+.+|.||....
T Consensus 272 D~a~~~~~-----~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 272 ECAEHNGR-----VYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred ecceeCCc-----ccccHHHHHHHHHHHHHHhcCCC
Confidence 99986321 13467789999999999998654
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=316.57 Aligned_cols=307 Identities=18% Similarity=0.258 Sum_probs=224.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc-ceecchhhhhhc---------Ccccccccc-------cchh-hc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFTPLLASTCV---------GTLEFRSVA-------EPIA-RI 123 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~-~~~~~~~~~~~~---------~~~~~~~~~-------~~~~-~~ 123 (436)
++||+||||||||++||.+|++.|.+|+|||+++. ++......+... ...++.... ..+. ..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999998754 222211000000 000110000 0010 01
Q ss_pred chhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc--cccccccChH
Q 013810 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK--ENATFLREVH 201 (436)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~--~~~~~~~~~~ 201 (436)
...+.+..++.++.+++..++.. .+.+.. .++. .++.||+||||||++|..|++||.+ .+++.. .
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~-------~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~---~ 149 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNH--SLRVHR-PEGN-------LEIHGEKIFINTGAQTVVPPIPGITTTPGVYDS---T 149 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCC--EEEEEe-CCCe-------EEEEeCEEEEcCCCcCCCCCCCCccCCCCEECh---h
Confidence 11233445899999988888764 444432 1332 1589999999999999999999974 233322 1
Q ss_pred HHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC
Q 013810 202 HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS 280 (436)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~ 280 (436)
+... +...| ++++|||+|++|+|+|..|.+++ .+|+++++. .+++
T Consensus 150 ~~~~----------~~~~~----------~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~ 195 (441)
T PRK08010 150 GLLN----------LKELP----------GHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLP 195 (441)
T ss_pred Hhhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCC
Confidence 1111 11122 38999999999999999999876 899999995 5778
Q ss_pred cccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEEc-CCcEEecceEEEecCCCCch-h--cccCCCCCCCCCcEE
Q 013810 281 SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIG 353 (436)
Q Consensus 281 ~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~~-~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~ 353 (436)
.+++++.+.+.+.|++.||+++.+. +.+++. +.+.+. ++.++++|.|++|+|.+|+. + ++..+++++++|+|.
T Consensus 196 ~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~ 275 (441)
T PRK08010 196 REDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIV 275 (441)
T ss_pred CcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEE
Confidence 8889999999999999999999984 888864 334332 23358999999999999994 3 467788888899999
Q ss_pred eCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCceeeecchhHHHHHHH
Q 013810 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 354 vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~~~~~~~~~~~~~~~~ 424 (436)
||+++| |++|||||+|||++. +++.+.|..||+.++.||+.. ..+++.++++.+..+|++.
T Consensus 276 vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte 345 (441)
T PRK08010 276 VDKYLH-TTADNIWAMGDVTGG---------LQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTE 345 (441)
T ss_pred ECCCcc-cCCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCH
Confidence 999999 899999999999986 688999999999999999752 1346667788888888665
Q ss_pred h
Q 013810 425 L 425 (436)
Q Consensus 425 ~ 425 (436)
.
T Consensus 346 ~ 346 (441)
T PRK08010 346 E 346 (441)
T ss_pred H
Confidence 3
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=319.32 Aligned_cols=287 Identities=20% Similarity=0.290 Sum_probs=214.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC---------Ccceecchhhhh-----h---------------cCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTPLLAST-----C---------------VGTL 111 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~---------~~~~~~~~~~~~-----~---------------~~~~ 111 (436)
.++||+||||||||+.||..+++.|.+|+|||+. ..++......+. + .|..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4589999999999999999999999999999962 223222111000 0 0000
Q ss_pred -------ccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 112 -------EFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 112 -------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
++..+.. .+......+....++.++.+++..++.....+.. .+|+ +..+.||+||||
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~---~~g~------~~~~~~d~LIIA 174 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ---LDGT------KLRYTAKHILIA 174 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe---CCCc------EEEEEcCEEEEe
Confidence 0000000 0111111233457899999999888876444432 2443 125889999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|..|++||.+ ... +.+++..+. ..| ++++|||+|++|+|+|..++.++
T Consensus 175 TGs~p~~p~ipG~~-~~~---~~~~~~~l~----------~~~----------k~vvVIGgG~ig~E~A~~l~~~G---- 226 (499)
T PLN02507 175 TGSRAQRPNIPGKE-LAI---TSDEALSLE----------ELP----------KRAVVLGGGYIAVEFASIWRGMG---- 226 (499)
T ss_pred cCCCCCCCCCCCcc-cee---chHHhhhhh----------hcC----------CeEEEECCcHHHHHHHHHHHHcC----
Confidence 99999999999863 222 223332221 112 38999999999999999998876
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEec
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWST 331 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. |++++. ++ +.+.+|+++++|.|++++
T Consensus 227 ----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~ 296 (499)
T PLN02507 227 ----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFAT 296 (499)
T ss_pred ----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEee
Confidence 899999995 47788999999999999999999999994 888863 33 555678889999999999
Q ss_pred CCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 332 GVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 332 G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|++|+ .+ ++..+++++++|+|.||+++| |+.|||||+|||++. +.+++.|.+||+.||+||..
T Consensus 297 G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~-Ts~p~IyAiGDv~~~---------~~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 297 GRAPNTKRLNLEAVGVELDKAGAVKVDEYSR-TNIPSIWAIGDVTNR---------INLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred cCCCCCCCCCchhhCcEECCCCcEecCCCCc-CCCCCEEEeeEcCCC---------CccHHHHHHHHHHHHHHHcC
Confidence 99999 43 567888888899999999999 899999999999985 67899999999999999974
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.87 Aligned_cols=282 Identities=21% Similarity=0.353 Sum_probs=212.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~------~~~~~ 115 (436)
++||+||||||||++||+.+++.|++|+|||+. .++......+.. .|. .++..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 489999999999999999999999999999985 333221100000 000 00000
Q ss_pred c-------ccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 116 V-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 116 ~-------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
+ ...+.+.........++.++.+++..++.+ .+.+. .++. .+.||+||||||++|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~--~~g~--------~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVL--QDGT--------TYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEe--cCCe--------EEEcCEEEEecCCcCCCCCCC
Confidence 0 001112222234456899999998888764 34432 2454 799999999999999999999
Q ss_pred CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
|.+. ..+ ..++.. +...| ++++|||+|++|+|+|..+++++ .
T Consensus 149 G~~~-~~~---~~~~~~----------l~~~~----------~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHEL-GIT---SNEAFH----------LPTLP----------KSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Cccc-eec---hHHhhc----------ccccC----------CeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 8632 221 122221 11122 48999999999999999998776 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCch-h--c
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-L--V 339 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~-~--~ 339 (436)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+++.+|+++++|.|++|+|.+|+. . +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 99999995 46788899999999999999999999984 888863 2 3556688899999999999999993 3 5
Q ss_pred ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 340 ~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+..+++++++|+|.||+++| |++|||||+|||++. +.+++.|.+||+.||+||..
T Consensus 271 ~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 271 EAAGVELNDAGAIAVDEYSR-TSIPSIYAVGDVTDR---------INLTPVAIMEATCFANTEFG 325 (446)
T ss_pred cccCeEECCCCcEEeCCCCc-cCCCCEEEeeccCCC---------ccchhHHHHHHHHHHHHHhc
Confidence 77888888899999999999 899999999999975 67899999999999999975
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=316.32 Aligned_cols=303 Identities=20% Similarity=0.263 Sum_probs=219.9
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh--------------------hhcCcc-------c
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS--------------------TCVGTL-------E 112 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~--------------------~~~~~~-------~ 112 (436)
+.++||+||||||||++||.+|++.|++|+|||+... +......+ ...|.. +
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~-GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLL-GGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc-CCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 3469999999999999999999999999999998632 21100000 001110 1
Q ss_pred ccccccch-------hhcchhhhcCC-CcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 113 FRSVAEPI-------ARIQPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 113 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..+.... ........+.. ++.++.++...+ +.+.+.+ ++. ++.||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~--~~~~v~v----~~~--------~~~~d~lViATGs~p~~ 147 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE--SPNTVRV----GGE--------TLRAKRIFINTGARAAI 147 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc--cCCEEEE----CcE--------EEEeCEEEEcCCCCCCC
Confidence 11111000 01111122333 788888766543 3455654 343 78999999999999999
Q ss_pred CCCCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|++||.+. .+++..+ ... ....| ++|+|||+|++|+|+|..|++++
T Consensus 148 p~i~G~~~~~~~~~~~---~~~----------~~~~~----------~~vvVIGgG~~g~E~A~~l~~~G---------- 194 (463)
T PRK06370 148 PPIPGLDEVGYLTNET---IFS----------LDELP----------EHLVIIGGGYIGLEFAQMFRRFG---------- 194 (463)
T ss_pred CCCCCCCcCceEcchH---hhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC----------
Confidence 99999753 2333222 111 11122 49999999999999999998876
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc---CCcEEecceEEEecCCC
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~---~g~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++.+ . +.+. +++++++|.||+|+|++
T Consensus 195 ----~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 195 ----SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred ----CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 899999995 57788889999999999999999999984 8888642 2 3332 34579999999999999
Q ss_pred Cc-h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh------
Q 013810 335 PS-T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL------ 405 (436)
Q Consensus 335 p~-~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~------ 405 (436)
|+ . + ++..+++++++|+|.||+++| |+.|+|||+|||+.. +++.+.|..||+.||+||...
T Consensus 271 pn~~~l~l~~~g~~~~~~G~i~vd~~l~-t~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~ 340 (463)
T PRK06370 271 PNTDDLGLEAAGVETDARGYIKVDDQLR-TTNPGIYAAGDCNGR---------GAFTHTAYNDARIVAANLLDGGRRKVS 340 (463)
T ss_pred cCCCCcCchhhCceECCCCcEeECcCCc-CCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99 4 4 567788889999999999999 899999999999986 678999999999999999753
Q ss_pred --cCCceeeecchhHHHHHHH
Q 013810 406 --ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 406 --~~~~~~~~~~~~~~~~~~~ 424 (436)
..++..+++..+.++|++.
T Consensus 341 ~~~~p~~~~~~p~ia~vG~te 361 (463)
T PRK06370 341 DRIVPYATYTDPPLARVGMTE 361 (463)
T ss_pred cccCCeEEEcCCCcEeeeCCH
Confidence 2345556677777777554
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=317.54 Aligned_cols=290 Identities=20% Similarity=0.244 Sum_probs=214.3
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc---------------Ccc-----------cc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------GTL-----------EF 113 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~---------------~~~-----------~~ 113 (436)
+.++||+||||||||++||..|++.|.+|+|||+.+.++......+... ... ++
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 3458999999999999999999999999999999755433211100000 000 00
Q ss_pred cccccc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+... +...........++.++.+++..++.. .+.+.. .+|. ...+.||+||||||+.|+.|+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviATGs~p~~p~ 153 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVEC-PDGE------VETLTADKIVIATGSRPYRPP 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCCCC
Confidence 000000 001111223456889999888777654 444432 1332 126899999999999999988
Q ss_pred CCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
+++.+ ..+++. .+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 154 ~~~~~~~~v~~~---~~~~~~----------~~~~----------~~v~IiGgG~~g~E~A~~l~~~g------------ 198 (461)
T PRK05249 154 DVDFDHPRIYDS---DSILSL----------DHLP----------RSLIIYGAGVIGCEYASIFAALG------------ 198 (461)
T ss_pred CCCCCCCeEEcH---HHhhch----------hhcC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 77754 223322 222111 1112 49999999999999999999876
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCc-hh
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS-TL 338 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~ 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. +++++ ++. +++.+|+++++|.|++|+|++|+ .+
T Consensus 199 --~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 199 --VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred --CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 899999995 57888999999999999999999999984 88876 333 44567888999999999999999 33
Q ss_pred --cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||.||...
T Consensus 277 l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 277 LNLENAGLEADSRGQLKVNENYQ-TAVPHIYAVGDVIGF---------PSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred CCchhhCcEecCCCcEeeCCCcc-cCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHcCC
Confidence 567788888899999999999 899999999999975 678999999999999999843
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=315.39 Aligned_cols=311 Identities=18% Similarity=0.215 Sum_probs=226.7
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh------cCc------
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC------VGT------ 110 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~------~~~------ 110 (436)
+...++||+||||||||++||..|++.|++|+|||++. ++......+ .. .|.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 34567999999999999999999999999999999864 211100000 00 010
Q ss_pred ccccccccchhhcc--------hh-hhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC
Q 013810 111 LEFRSVAEPIARIQ--------PA-ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (436)
Q Consensus 111 ~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~ 181 (436)
.++..+.....+.. .. +....++.++.+++..+|.+...+.+. +|+ +.+++||+||||||++
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~---~g~------~~~~~~d~lViATGs~ 151 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLN---DGG------EQTVHFDRAFIGTGAR 151 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEec---CCC------eEEEECCEEEEeCCCC
Confidence 00111110001100 01 122347899999999998776555543 332 1279999999999999
Q ss_pred CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 182 ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 182 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
|+.|++||.+...+ .+..+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 152 p~~p~i~G~~~~~~--~~~~~~~~l----------~~~~----------~~vvViG~G~~G~E~A~~l~~~g-------- 201 (468)
T PRK14694 152 PAEPPVPGLAETPY--LTSTSALEL----------DHIP----------ERLLVIGASVVALELAQAFARLG-------- 201 (468)
T ss_pred CCCCCCCCCCCCce--Ecchhhhch----------hcCC----------CeEEEECCCHHHHHHHHHHHHcC--------
Confidence 99999999754211 111222221 1112 38999999999999999999876
Q ss_pred cCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--CeEEE-cCCcEEecceEEEecCCCCch
Q 013810 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~ 337 (436)
.+|++++++++++.+++++.+.+.+.|++.||+++.+ .+.+++. +.+.+ .++.++++|.|++|+|.+|+.
T Consensus 202 ------~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 202 ------SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNT 275 (468)
T ss_pred ------CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCc
Confidence 8999999887888889999999999999999999998 4888764 22322 234479999999999999994
Q ss_pred -h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------C
Q 013810 338 -L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------R 407 (436)
Q Consensus 338 -~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~ 407 (436)
+ +..++++. ++|+|.||+++| |++|+|||+|||+.. +..++.|..||+.||.||.... .
T Consensus 276 ~~l~l~~~g~~~-~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~ 344 (468)
T PRK14694 276 ENLNLESIGVET-ERGAIRIDEHLQ-TTVSGIYAAGDCTDQ---------PQFVYVAAAGGSRAAINMTGGDASLDLSAM 344 (468)
T ss_pred CCCCchhcCccc-CCCeEeeCCCcc-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHhcCCCcccccCCC
Confidence 4 35567775 478999999999 899999999999986 6788999999999999997422 4
Q ss_pred CceeeecchhHHHHHHHh
Q 013810 408 NWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~ 425 (436)
+++.++++.+..+|++..
T Consensus 345 p~~~~~~p~~a~vGlte~ 362 (468)
T PRK14694 345 PEVIFTDPQVATVGLSEA 362 (468)
T ss_pred CeEEECCCCeEEeeCCHH
Confidence 678888888888886653
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=315.35 Aligned_cols=280 Identities=22% Similarity=0.318 Sum_probs=211.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhh------cCc------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC------VGT------LEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~------~~~------~~~~ 114 (436)
++||+||||||||++||..|++.|++|+|||+. .++..... + ... .|. .++.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 589999999999999999999999999999986 32221100 0 000 000 0001
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+.. .+.+.........++.++.+++..++. +.+.+ ++. ++.||+||||||++|+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~----~g~--------~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV----NGE--------RYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE----CCE--------EEEeCEEEEecCCCCCCCCC
Confidence 0000 011111112334689999998887764 45554 444 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+ ..++..+. .. +...| ++|+|||+|++|+|+|..|++++
T Consensus 149 ~g~~-~~~~~~~~---~~----------~~~~~----------~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITSDGF---FA----------LEELP----------KRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEchhHh---hC----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9863 22222111 11 11122 49999999999999999998776
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCCCc-hh-
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPS-TL- 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~-~~- 338 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.++ |.+++. + .+.+.+|+++++|.|++|+|.+|+ ..
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 899999995 46788899999999999999999999984 888863 2 356678889999999999999999 32
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++..+++++++|+|.||+++| |++|||||+|||++. ++++..|++||+.||+||..
T Consensus 271 ~l~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 271 GLENAGVKLNEKGYIIVDEYQN-TNVPGIYAVGDVTGR---------VELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CchhcCceECCCCcEecCCCCC-cCCCCEEEEeecCCC---------cCcHHHHHHHHHHHHHHHhC
Confidence 567888889999999999999 899999999999975 67899999999999999985
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=315.01 Aligned_cols=303 Identities=20% Similarity=0.262 Sum_probs=219.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC---------Ccceecch---------------hhhhh-----cCc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTPL---------------LASTC-----VGT- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~---------~~~~~~~~---------------~~~~~-----~~~- 110 (436)
.++||+||||||||+.||..+++.|.+|+|||+. ..++.... +.... .|.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3589999999999999999999999999999951 11111100 00000 000
Q ss_pred ------ccccccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 111 ------LEFRSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 111 ------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
.++..+. ..+........+..++.++.++++.++.. .+.+ +|. ++.||+||||
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v----~G~--------~~~~D~LVIA 223 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDV----DGK--------LYTARNILIA 223 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEE----CCE--------EEECCEEEEe
Confidence 0111110 01111222234456899999988888764 4543 454 7999999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|..|++||.+ .++ +..++..+ . ..+++|+|||+|++|+|+|..|+.++
T Consensus 224 TGs~p~~P~IpG~~-~v~---~~~~~l~~----------~----------~~~k~V~VIGgG~iGvE~A~~L~~~g---- 275 (558)
T PLN02546 224 VGGRPFIPDIPGIE-HAI---DSDAALDL----------P----------SKPEKIAIVGGGYIALEFAGIFNGLK---- 275 (558)
T ss_pred CCCCCCCCCCCChh-hcc---CHHHHHhc----------c----------ccCCeEEEECCCHHHHHHHHHHHhcC----
Confidence 99999999999963 222 22222211 1 12349999999999999999998776
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---CeEE--EcCCcEEecceEEEe
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QKLI--LNDGTEVPYGLLVWS 330 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~~v~--~~~g~~i~~D~vi~a 330 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. +.+++. +.+. +.+++.+.+|.|+++
T Consensus 276 ----------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva 345 (558)
T PLN02546 276 ----------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFA 345 (558)
T ss_pred ----------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEe
Confidence 899999985 57888999999999999999999999984 777752 3333 344544568999999
Q ss_pred cCCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-
Q 013810 331 TGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA- 406 (436)
Q Consensus 331 ~G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~- 406 (436)
+|++|+. + ++.++++++++|+|.||+++| |++|||||+|||++. +.+++.|..||+.+|+||....
T Consensus 346 ~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~-Ts~p~IYAaGDv~~~---------~~l~~~A~~~g~~~a~~i~g~~~ 415 (558)
T PLN02546 346 TGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR-TSVPSIWAVGDVTDR---------INLTPVALMEGGALAKTLFGNEP 415 (558)
T ss_pred eccccCCCcCChhhcCCcCCCCCcEeECCCce-eCCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHHcCCCC
Confidence 9999994 3 578899999899999999999 899999999999986 6789999999999999998532
Q ss_pred -------CCceeeecchhHHHHHHHh
Q 013810 407 -------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 -------~~~~~~~~~~~~~~~~~~~ 425 (436)
.++..+-+..+..+|++..
T Consensus 416 ~~~~~~~vp~~vft~Peia~VGlte~ 441 (558)
T PLN02546 416 TKPDYRAVPSAVFSQPPIGQVGLTEE 441 (558)
T ss_pred CcCCCCCCCEEEeCCchHhhccCCHH
Confidence 2344333446666776553
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=317.01 Aligned_cols=307 Identities=19% Similarity=0.196 Sum_probs=220.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~------~~~~ 114 (436)
.++||+||||||||++||..|++.|.+|+|||+.+.++......+.. .|. .++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 45899999999999999999999999999999875543321100000 000 0011
Q ss_pred ccccch-------hhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC-CC
Q 013810 115 SVAEPI-------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FG 186 (436)
Q Consensus 115 ~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~-~~ 186 (436)
.+.... ......+.+..++.++.+++..++ .+.+.+.. .+|+ ..++.||+||||||++|+. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~p~ 153 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTG-EDGK------TTVIEFDNAIIAAGSRPIQLPF 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEec-CCCc------eEEEEcCEEEEeCCCCCCCCCC
Confidence 110000 001112234568999998877665 35555543 2331 1278999999999999974 44
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
+++..+.++.. .++..+ ...| ++++|||+|++|+|+|..|.+++
T Consensus 154 ~~~~~~~v~~~---~~~~~~----------~~~~----------~~vvIiGgG~iG~E~A~~l~~~G------------- 197 (471)
T PRK06467 154 IPHDDPRIWDS---TDALEL----------KEVP----------KRLLVMGGGIIGLEMGTVYHRLG------------- 197 (471)
T ss_pred CCCCCCcEECh---HHhhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 55543333322 222221 1223 49999999999999999999876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcC--C--cEEecceEEEecCCCCc
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILND--G--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~--g--~~i~~D~vi~a~G~~p~ 336 (436)
.+|+++++. .+++.+++++.+.+.+.|++. |+++.+. +++++ ++.+ ++.+ + +++++|.|++++|++|+
T Consensus 198 -~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 198 -SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 899999995 578889999999999999988 9999984 88775 3333 3333 2 36999999999999999
Q ss_pred -hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------c
Q 013810 337 -TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------A 406 (436)
Q Consensus 337 -~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~ 406 (436)
++ +...+++++++|+|.||+++| |++|+|||+|||++. +.+++.|.+||+.||.||... .
T Consensus 276 ~~~l~~~~~gl~~~~~G~I~Vd~~~~-t~~p~VyAiGDv~~~---------~~la~~A~~eG~~aa~~i~g~~~~~~~~~ 345 (471)
T PRK06467 276 GKLLDAEKAGVEVDERGFIRVDKQCR-TNVPHIFAIGDIVGQ---------PMLAHKGVHEGHVAAEVIAGKKHYFDPKV 345 (471)
T ss_pred CCccChhhcCceECCCCcEeeCCCcc-cCCCCEEEehhhcCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 33 466788899999999999999 899999999999975 678999999999999999742 2
Q ss_pred CCceeeecchhHHHHHHH
Q 013810 407 RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (436)
.+++.+++..+..++++.
T Consensus 346 ~p~~~~~~p~ia~vGlte 363 (471)
T PRK06467 346 IPSIAYTEPEVAWVGLTE 363 (471)
T ss_pred CCeEEECCCceeEEECCH
Confidence 456667777777777554
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=311.81 Aligned_cols=306 Identities=20% Similarity=0.304 Sum_probs=221.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc-eecchhhhhhc-C--------ccccccccc-------chhhcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCV-G--------TLEFRSVAE-------PIARIQ 124 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~-~~~~~~~~~~~-~--------~~~~~~~~~-------~~~~~~ 124 (436)
++||+||||||||++||..|++.|++|+|||+++.. +......+... . ..++.+... .+....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998642 22211100000 0 001111111 111111
Q ss_pred hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc--ccccccChHH
Q 013810 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVHH 202 (436)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~--~~~~~~~~~~ 202 (436)
.......++.++.+++..+ +.+.+.+....+.. .+.||+||||||++|+.|++||.++ ++++. .+
T Consensus 83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~~~--------~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~---~~ 149 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDEKI--------ELTAETIVINTGAVSNVLPIPGLADSKHVYDS---TG 149 (438)
T ss_pred HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCCcE--------EEEcCEEEEeCCCCCCCCCCCCcCCCCcEEch---HH
Confidence 1223456888888877554 45666664311112 6899999999999999999999742 23322 22
Q ss_pred HHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc
Q 013810 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS 281 (436)
Q Consensus 203 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~ 281 (436)
+..+ ...| ++|+|||+|++|+|+|..+++++ .+|+++++. .+++.
T Consensus 150 ~~~~----------~~~~----------~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 150 IQSL----------ETLP----------ERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPR 195 (438)
T ss_pred Hhcc----------hhcC----------CeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCC
Confidence 2111 1123 38999999999999999998766 899999995 57777
Q ss_pred ccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEE-EcCCcEEecceEEEecCCCCc-hh--cccCCCCCCCCCcEEe
Q 013810 282 FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLI-LNDGTEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGGRIGI 354 (436)
Q Consensus 282 ~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~-~~~g~~i~~D~vi~a~G~~p~-~~--~~~~~l~~~~~G~i~v 354 (436)
+++++.+.+.+.+++.||+++.+. +++++. +.+. ..+++++++|.+++|+|.+|+ +. ++..++..+++|+|.|
T Consensus 196 ~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~v 275 (438)
T PRK07251 196 EEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKV 275 (438)
T ss_pred CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEE
Confidence 889999999999999999999984 888864 2333 346778999999999999998 33 3445677778899999
Q ss_pred CCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCceeeecchhHHHHHHH
Q 013810 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 355 d~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~~~~~~~~~~~~~~~~ 424 (436)
|+++| |+.|||||+|||++. +.+...|..+|+.++.++... ..++..++++.+..+|++.
T Consensus 276 d~~~~-t~~~~IyaiGD~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte 344 (438)
T PRK07251 276 DDYCQ-TSVPGVFAVGDVNGG---------PQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTE 344 (438)
T ss_pred CCCcc-cCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCH
Confidence 99999 899999999999986 678899999999999888632 2345666888888887544
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=315.31 Aligned_cols=306 Identities=22% Similarity=0.288 Sum_probs=220.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc--------------------Cc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV--------------------GT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~--------------------~~------~~~~ 114 (436)
..+||+||||||||++||..|++.|++|+|||++. ++......+... |. .++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999876 322211100000 00 0011
Q ss_pred ccccchh-------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAEPIA-------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+..... .......+..++.++.++++.++.. .+.+....++. .+.||+||||||++|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~--------~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQ--------TYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcE--------EEEeCEEEEeCCCCCCCC--
Confidence 1110100 0011233457899999988877654 34443212223 799999999999998754
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+.....+.+..++..+. ..| ++++|||+|++|+|+|..|++.+
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~~~----------~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------EVP----------KSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------ccC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 45432111222333332211 112 48999999999999999998766
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--eE--EEcCC---cEEecceEEEecCCCCc-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KL--ILNDG---TEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~v--~~~~g---~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. |.+++.+ .+ .+.++ +++++|.||+|+|.+|+ .
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999994 57788899999999999999999999994 8888643 33 44555 67999999999999999 4
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------CC
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------RN 408 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~~ 408 (436)
+ ++..+++++ +|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||.... .+
T Consensus 276 ~l~l~~~gl~~~-~g~i~vd~~~~-t~~~~VyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~ 344 (462)
T PRK06416 276 NLGLEELGVKTD-RGFIEVDEQLR-TNVPNIYAIGDIVGG---------PMLAHKASAEGIIAAEAIAGNPHPIDYRGIP 344 (462)
T ss_pred CCCchhcCCeec-CCEEeECCCCc-cCCCCEEEeeecCCC---------cchHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 4 357788888 89999999999 999999999999975 6789999999999999998532 45
Q ss_pred ceeeecchhHHHHHHH
Q 013810 409 WCWFFDVCSLTSILNR 424 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (436)
.+.+++..+..+|++.
T Consensus 345 ~~~~~~~~~a~vG~te 360 (462)
T PRK06416 345 AVTYTHPEVASVGLTE 360 (462)
T ss_pred eEEECCCceEEEeCCH
Confidence 6777888777777554
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=315.88 Aligned_cols=308 Identities=18% Similarity=0.189 Sum_probs=223.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh-------------------hh--cCc------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS-------------------TC--VGT------LEF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~-------------------~~--~~~------~~~ 113 (436)
.++||+||||||||++||..|++.|.+|+|||++ .++......+ .. .|. .++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3689999999999999999999999999999987 4332210000 00 011 001
Q ss_pred cccccchh----h-----cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 114 RSVAEPIA----R-----IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 114 ~~~~~~~~----~-----~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+..... . +...+....++.++.+++..++.. .+.+.. .+|+ .+.+.||+||||||++|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQ--TLIVRL-NDGG------ERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCC--EEEEEe-CCCc------eEEEEcCEEEEcCCCCCCC
Confidence 11100000 0 001112223789999988887754 444432 2332 1268999999999999999
Q ss_pred CCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 185 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
|++||.+...+ .+..+... ....| ++++|||+|++|+|+|..|.+++
T Consensus 247 p~i~g~~~~~~--~~~~~~~~----------~~~~~----------~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY--WTSTEALV----------SDTIP----------ERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce--EccHHHhh----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999753221 11111111 11122 49999999999999999999877
Q ss_pred CCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEE-cCCcEEecceEEEecCCCCch-h-
Q 013810 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST-L- 338 (436)
Q Consensus 265 ~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~-~- 338 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +++++. +.+.+ .++.++++|.|++++|++|+. +
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 89999999777888899999999999999999999984 888753 33332 233469999999999999994 3
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------cCCce
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------ARNWC 410 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~~~~~ 410 (436)
++..+++++++|+|.||+++| |+.|||||+|||+.. +..+..|..||+.||.||+.. ..+.+
T Consensus 371 ~l~~~g~~~~~~g~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~ 440 (561)
T PRK13748 371 ALDAAGVTVNAQGAIVIDQGMR-TSVPHIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMTGGDAALDLTAMPAV 440 (561)
T ss_pred CchhcCceECCCCCEeECCCcc-cCCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHcCCCcccCCCCCCeE
Confidence 567889999899999999999 899999999999986 678899999999999999742 23567
Q ss_pred eeecchhHHHHHHH
Q 013810 411 WFFDVCSLTSILNR 424 (436)
Q Consensus 411 ~~~~~~~~~~~~~~ 424 (436)
.+++..+..+|++.
T Consensus 441 ~~~~p~~a~vGlte 454 (561)
T PRK13748 441 VFTDPQVATVGYSE 454 (561)
T ss_pred EEccCCceeeeCCH
Confidence 77888888888655
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=308.36 Aligned_cols=307 Identities=22% Similarity=0.285 Sum_probs=221.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh--------------------cCcc---------cc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC--------------------VGTL---------EF 113 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~--------------------~~~~---------~~ 113 (436)
++|+|||||+||+.||..+++.|.+|+|||++. +.......+.. .|.. ++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 689999999999999999999999999999875 22211100000 0100 00
Q ss_pred cccccch-------hhcchhhhcCCCcEEEEeEeEeEe--CCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 114 RSVAEPI-------ARIQPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 114 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~id--~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+.... ...........+++++.+++..++ .+.+.+.+.. .+|. ..++.||+||||||++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~-~~g~------~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTT-ADGG------EETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEe-CCCc------eEEEecCEEEEcCCCCCCC
Confidence 0000000 111112233468999999888755 4456666543 2332 1268999999999999987
Q ss_pred CCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|++++.+ +.+++..++.+. ...| ++++|||+|.+|+|+|..|++++
T Consensus 154 ~p~~~~~~~~v~~~~~~~~~-------------~~~~----------~~vvVIGgG~ig~E~A~~l~~~g---------- 200 (466)
T PRK07845 154 LPTAEPDGERILTWRQLYDL-------------DELP----------EHLIVVGSGVTGAEFASAYTELG---------- 200 (466)
T ss_pred CCCCCCCCceEEeehhhhcc-------------cccC----------CeEEEECCCHHHHHHHHHHHHcC----------
Confidence 7665543 334443332211 1123 38999999999999999998876
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCch
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.+. +.+++ +++ +.+.+|+++++|.|++++|++|+.
T Consensus 201 ----~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 201 ----VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred ----CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 899999984 57888899999999999999999999984 88885 333 455788899999999999999994
Q ss_pred -h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--------
Q 013810 338 -L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------- 406 (436)
Q Consensus 338 -~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------- 406 (436)
. +++++++++++|+|.||+++| |+.|||||+|||++. +++++.|..||+.||.||+...
T Consensus 277 ~~l~l~~~gl~~~~~G~i~Vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~ 346 (466)
T PRK07845 277 AGLGLEEAGVELTPSGHITVDRVSR-TSVPGIYAAGDCTGV---------LPLASVAAMQGRIAMYHALGEAVSPLRLKT 346 (466)
T ss_pred CCCCchhhCceECCCCcEeECCCcc-cCCCCEEEEeeccCC---------ccchhHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 3 577889999999999999999 899999999999986 7889999999999999998532
Q ss_pred CCceeeecchhHHHHHHH
Q 013810 407 RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~ 424 (436)
.+...+.++.+..++++.
T Consensus 347 ~p~~vf~~p~~a~vGlte 364 (466)
T PRK07845 347 VASNVFTRPEIATVGVSQ 364 (466)
T ss_pred CCEEEeCCCcceeecCCH
Confidence 122333356666666544
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=311.17 Aligned_cols=302 Identities=21% Similarity=0.232 Sum_probs=221.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhhc----C------cccccccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STCV----G------TLEFRSVA 117 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~~----~------~~~~~~~~ 117 (436)
+||+||||||||++||..|++.|.+|+|||+++ ++..... + .... | ..++..+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 589999999999999999999999999999864 3222110 0 0000 0 00111000
Q ss_pred c-------chhh-cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 118 E-------PIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 118 ~-------~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
. .+.. ....+.+..++.++.+++..++ .+.+.+. ++. ..+.||+||||||++|+.|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~---~g~-------~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVD---LGR-------EVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEc---CCe-------EEEEeCEEEEcCCCCCCCCCCCC
Confidence 0 0100 0112344568889888877654 4566553 332 15789999999999999999999
Q ss_pred Cccc-cccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 190 VKEN-ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 190 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
.+.. +++. .++.. ....| ++++|||+|.+|+|+|..|++++ .
T Consensus 148 ~~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~~g~E~A~~l~~~g--------------~ 190 (463)
T TIGR02053 148 LKEAGYLTS---EEALA----------LDRIP----------ESLAVIGGGAIGVELAQAFARLG--------------S 190 (463)
T ss_pred cccCceECc---hhhhC----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 7532 2222 22211 11112 48999999999999999999876 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc---CCcEEecceEEEecCCCCc-h-
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS-T- 337 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~---~g~~i~~D~vi~a~G~~p~-~- 337 (436)
+|+++++. .+++.+++++.+.+.+.+++.||+++.++ |++++.+ . +.+. +++++++|.|++|+|++|+ .
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 191 EVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred cEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 99999995 67888899999999999999999999995 8888642 2 3333 2357999999999999999 4
Q ss_pred h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-c-------CC
Q 013810 338 L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-A-------RN 408 (436)
Q Consensus 338 ~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~-------~~ 408 (436)
+ ++..+++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||... . .+
T Consensus 271 l~l~~~g~~~~~~G~i~vd~~~~-Ts~~~VyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p 340 (463)
T TIGR02053 271 LGLEKAGVKLDERGGILVDETLR-TSNPGIYAAGDVTGG---------LQLEYVAAKEGVVAAENALGGANAKLDLLVIP 340 (463)
T ss_pred CCccccCCEECCCCcEeECCCcc-CCCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHhcCCCCCccCcCCCC
Confidence 4 677788888899999999999 899999999999986 678999999999999999854 2 34
Q ss_pred ceeeecchhHHHHHHH
Q 013810 409 WCWFFDVCSLTSILNR 424 (436)
Q Consensus 409 ~~~~~~~~~~~~~~~~ 424 (436)
++.++++.+..++++.
T Consensus 341 ~~~~~~p~~a~vGlte 356 (463)
T TIGR02053 341 RVVFTDPAVASVGLTE 356 (463)
T ss_pred eEEeccCceEEEeCCH
Confidence 5666777777777554
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=310.55 Aligned_cols=313 Identities=18% Similarity=0.234 Sum_probs=216.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc-----ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT-----LEFRS 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~-----~~~~~ 115 (436)
.++||+||||||||++||..+++.|.+|+|||++. ++......+. ..|. .++..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 46899999999999999999999999999999863 2221100000 0010 01111
Q ss_pred ccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEE--------------------EE-----EecCCcccCC
Q 013810 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVH--------------------CE-----TVTDELRTLE 163 (436)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~--------------------~~-----~~~~g~~~~~ 163 (436)
+.. .+.+......+..++.++.++..-++ .++|. +. ...+|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~--~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~---- 199 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLS--ENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQ---- 199 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEec--CCEEEeeccccccccccccccccceeeeccceecCCCc----
Confidence 000 11111222334568888887654333 22322 21 112333
Q ss_pred CCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHH
Q 013810 164 PWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGV 243 (436)
Q Consensus 164 ~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~ 243 (436)
++.||+||||||++|+.|++||.+ .+++. ++... +. .+++|+|||+|++|+
T Consensus 200 ----~i~ad~lVIATGS~P~~P~IpG~~-~v~ts---~~~~~----------l~-----------~pk~VvIIGgG~iGl 250 (561)
T PTZ00058 200 ----VIEGKNILIAVGNKPIFPDVKGKE-FTISS---DDFFK----------IK-----------EAKRIGIAGSGYIAV 250 (561)
T ss_pred ----EEECCEEEEecCCCCCCCCCCCce-eEEEH---HHHhh----------cc-----------CCCEEEEECCcHHHH
Confidence 799999999999999999999863 23222 22111 11 134999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---eE--EE
Q 013810 244 EFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KL--IL 316 (436)
Q Consensus 244 e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---~v--~~ 316 (436)
|+|..+++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++++ ++ .+
T Consensus 251 E~A~~l~~~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~ 316 (561)
T PTZ00058 251 ELINVVNRLG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYL 316 (561)
T ss_pred HHHHHHHHcC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEE
Confidence 9999999877 899999995 57888999999999999999999999995 8888642 23 33
Q ss_pred cCC-cEEecceEEEecCCCCc-hhc--ccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccccc---------------
Q 013810 317 NDG-TEVPYGLLVWSTGVGPS-TLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE--------------- 377 (436)
Q Consensus 317 ~~g-~~i~~D~vi~a~G~~p~-~~~--~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~--------------- 377 (436)
.++ +++++|.|++|+|++|+ .++ +..++. +++|+|.||+++| |+.|+|||+|||+..+.
T Consensus 317 ~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lq-Ts~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~ 394 (561)
T PTZ00058 317 SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQR-TSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNE 394 (561)
T ss_pred CCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCc-cCCCCEEEeEeccCcccccccccccccccccc
Confidence 344 57999999999999999 333 223333 4579999999999 99999999999998432
Q ss_pred ---------CCCCcc-CCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHHHHh
Q 013810 378 ---------STGKTV-LPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 378 ---------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
.+++.. .+++++.|.+||++||.||+... .++..+.+..+..+|++..
T Consensus 395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~ 460 (561)
T PTZ00058 395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQ 460 (561)
T ss_pred ccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHH
Confidence 233333 37899999999999999997531 2344444456667776654
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=306.22 Aligned_cols=315 Identities=23% Similarity=0.277 Sum_probs=220.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CCeEEEEcCC--------Ccceecchhhhh---------------h-----cCc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFTPLLAST---------------C-----VGT- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~--------~~~~~~~~~~~~---------------~-----~~~- 110 (436)
.++||+||||||||+.||..+++. |.+|+|||++ ..++......+. . .|.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999996 8999999973 223221100000 0 000
Q ss_pred -------cccccccc-------chhhcchhhhcC-CCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEE
Q 013810 111 -------LEFRSVAE-------PIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175 (436)
Q Consensus 111 -------~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lV 175 (436)
.++..+.. .+........+. .++.++.++..-++ .+.+.+....++.. ..++.+.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~---~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKS---AVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCC---CcceEEECCEEE
Confidence 00000000 111111112223 48999988765444 46666643211110 001279999999
Q ss_pred EeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHH
Q 013810 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (436)
Q Consensus 176 iAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~ 255 (436)
||||++|..|++||.+ .+++ ..++.. +...| ++++|||+|++|+|+|..+..+.
T Consensus 157 IATGs~p~~p~i~G~~-~~~~---~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~~~~l~-- 210 (486)
T TIGR01423 157 LATGSWPQMLGIPGIE-HCIS---SNEAFY----------LDEPP----------RRVLTVGGGFISVEFAGIFNAYK-- 210 (486)
T ss_pred EecCCCCCCCCCCChh-heec---hhhhhc----------cccCC----------CeEEEECCCHHHHHHHHHHHHhc--
Confidence 9999999999999863 2222 222211 11223 48999999999999999887652
Q ss_pred HHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEE
Q 013810 256 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLV 328 (436)
Q Consensus 256 ~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi 328 (436)
+.+.+|+|+++. .+++.+++++.+.+.+.|++.||+++.+. +++++. + .+.+.+|+++++|.|+
T Consensus 211 ---------~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl 281 (486)
T TIGR01423 211 ---------PRGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVM 281 (486)
T ss_pred ---------cCCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEE
Confidence 124899999985 57889999999999999999999999995 888863 2 3666788899999999
Q ss_pred EecCCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 329 WSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 329 ~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+++|++|+. + ++..+++++++|+|.||+++| |+.|||||+|||++. +.+++.|.+||+.||+||+..
T Consensus 282 ~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~-Ts~~~IyA~GDv~~~---------~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 282 MAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR-TNVPNIYAIGDVTDR---------VMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred EeeCCCcCcccCCchhhCceECCCCCEecCCCCc-CCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhCC
Confidence 999999993 3 466788888899999999999 999999999999985 778999999999999999752
Q ss_pred c--------CCceeeecchhHHHHHHHh
Q 013810 406 A--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 ~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
. .|++.+-...+..+|++..
T Consensus 352 ~~~~~~~~~vp~~vft~peia~vGlte~ 379 (486)
T TIGR01423 352 KPRKTDHTRVASAVFSIPPIGTCGLVEE 379 (486)
T ss_pred CCcccCCCCCCEEEeCCCceEEeeCCHH
Confidence 2 2333333345555565543
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=307.29 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=222.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchh----h-----------hhh-----cCcc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLL----A-----------STC-----VGTL-- 111 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~----~-----------~~~-----~~~~-- 111 (436)
++||+||||||||+.||..+++.|.+|+|||+.. .++..... + ... .|..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 4799999999999999999999999999999631 11111000 0 000 0000
Q ss_pred -----ccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 112 -----EFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 112 -----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
++..+.. .+........+..++.++.++..-++. +.+.+... ++. ...+.||+||||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~-~g~------~~~~~~d~lVIATG 152 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNK-KGK------EKIYSAERFLIATG 152 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEecc-CCC------ceEEEeCEEEEecC
Confidence 0000000 011111123445688899888776664 45555422 222 12699999999999
Q ss_pred CCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 180 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
++|+.|++||.++..++. .+... +...| ++++|||+|++|+|+|..|++++
T Consensus 153 s~p~~p~ipG~~~~~~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 203 (484)
T TIGR01438 153 ERPRYPGIPGAKELCITS---DDLFS----------LPYCP----------GKTLVVGASYVALECAGFLAGIG------ 203 (484)
T ss_pred CCCCCCCCCCccceeecH---HHhhc----------ccccC----------CCEEEECCCHHHHHHHHHHHHhC------
Confidence 999999999975432222 22211 11223 38999999999999999999877
Q ss_pred hhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCC---cEEecceEEEec
Q 013810 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDG---TEVPYGLLVWST 331 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g---~~i~~D~vi~a~ 331 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++++. +.+++. +. +++.++ +++++|.|++++
T Consensus 204 --------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 204 --------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAI 275 (484)
T ss_pred --------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEe
Confidence 89999998778899999999999999999999999984 666653 23 555555 379999999999
Q ss_pred CCCCch-h--cccCCCCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh--
Q 013810 332 GVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-- 405 (436)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-- 405 (436)
|++|+. + ++..++++++ +|+|.||+++| |+.|+|||+|||+.. .+.+++.|.+||+.+|+||+..
T Consensus 276 G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~-Ts~p~IyA~GDv~~~--------~~~l~~~A~~~g~~aa~~i~~~~~ 346 (484)
T TIGR01438 276 GRDACTRKLNLENVGVKINKKTGKIPADEEEQ-TNVPYIYAVGDILED--------KQELTPVAIQAGRLLAQRLFSGST 346 (484)
T ss_pred cCCcCCCcCCcccccceecCcCCeEecCCCcc-cCCCCEEEEEEecCC--------CccchHHHHHHHHHHHHHHhcCCC
Confidence 999993 3 5677888875 58999999999 999999999999963 1568899999999999999742
Q ss_pred ------cCCceeeecchhHHHHHHHh
Q 013810 406 ------ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 ------~~~~~~~~~~~~~~~~~~~~ 425 (436)
..++..++++.+..++++..
T Consensus 347 ~~~~~~~~p~~i~~~p~ia~vGlte~ 372 (484)
T TIGR01438 347 VICDYENVPTTVFTPLEYGACGLSEE 372 (484)
T ss_pred cccccccCCeEEeCCCceeeecCCHH
Confidence 24566777777777786653
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=303.01 Aligned_cols=300 Identities=21% Similarity=0.255 Sum_probs=216.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc------cccccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT------LEFRSV 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~------~~~~~~ 116 (436)
+||+||||||||.+||..+ .|.+|+|||++. ++......+. ..|. .++..+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 7999999999999999774 599999999853 2211000000 0011 011111
Q ss_pred ccc----hhhc----chhh-hcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 117 AEP----IARI----QPAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 117 ~~~----~~~~----~~~~-~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
... ..++ .... .+..++.++.++...+ +.+.|.+. +|+ .+.||+||||||++|+.|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~---~g~--------~~~~d~lViATGs~p~~p~i 145 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTG---DGE--------EITADQVVIAAGSRPVIPPV 145 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEEC---CCC--------EEEeCEEEEcCCCCCCCCCC
Confidence 111 1111 1111 3346788888877666 45667653 454 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+.. .+.+.+++..+.. .| ++++|||+|++|+|+|..|++++
T Consensus 146 ~g~~~~--~~~~~~~~~~l~~----------~~----------~~vvIIGgG~iG~E~A~~l~~~G-------------- 189 (451)
T PRK07846 146 IADSGV--RYHTSDTIMRLPE----------LP----------ESLVIVGGGFIAAEFAHVFSALG-------------- 189 (451)
T ss_pred CCcCCc--cEEchHHHhhhhh----------cC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 986422 2233333333211 12 38999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEcCCcEEecceEEEecCCCCc-hh--
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPS-TL-- 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~~g~~i~~D~vi~a~G~~p~-~~-- 338 (436)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. +.+++.+ . +.+.+|+++++|.|++|+|++|+ ++
T Consensus 190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~ 268 (451)
T PRK07846 190 VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLD 268 (451)
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccC
Confidence 899999995 577888999888877655 5679999984 8888642 3 55678889999999999999999 45
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---------cCCc
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---------ARNW 409 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---------~~~~ 409 (436)
++..+++++++|+|.||+++| |++|||||+|||+.. +.+++.|.+||+.+|+||... ..++
T Consensus 269 ~~~~gl~~~~~G~i~Vd~~~~-Ts~p~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~ 338 (451)
T PRK07846 269 AAAAGVDVDEDGRVVVDEYQR-TSAEGVFALGDVSSP---------YQLKHVANHEARVVQHNLLHPDDLIASDHRFVPA 338 (451)
T ss_pred chhcCceECCCCcEeECCCcc-cCCCCEEEEeecCCC---------ccChhHHHHHHHHHHHHHcCCCCccccCCCCCCe
Confidence 357788888999999999999 999999999999986 678899999999999999742 1245
Q ss_pred eeeecchhHHHHHHHh
Q 013810 410 CWFFDVCSLTSILNRL 425 (436)
Q Consensus 410 ~~~~~~~~~~~~~~~~ 425 (436)
..+.++.+..++++..
T Consensus 339 ~if~~p~ia~vGlte~ 354 (451)
T PRK07846 339 AVFTHPQIASVGLTEN 354 (451)
T ss_pred EEECCCCcEeEeCCHH
Confidence 5555666666675553
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.64 Aligned_cols=307 Identities=19% Similarity=0.211 Sum_probs=218.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceec-------ch---hhh-----------hhcCc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT-------PL---LAS-----------TCVGT-- 110 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~-------~~---~~~-----------~~~~~-- 110 (436)
++||+||||||||++||.+|++.|.+|+|||+.+ .++.+ |. +.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 5899999999999999999999999999999631 12221 10 000 00010
Q ss_pred ---ccccccccchhhcc----h---hhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 111 ---LEFRSVAEPIARIQ----P---AISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 111 ---~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
.++..+........ . ...+..++.++.+++... +.+.+.+....++. .+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~--~~~~v~v~~~~~~~--------~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLK--DEHTVSYGDNSQEE--------TITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEc--cCCEEEEeeCCCce--------EEECCEEEEecCC
Confidence 11111111111110 0 112235677777766544 34566654211122 7999999999999
Q ss_pred CCCCCC-CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 181 EASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 181 ~~~~~~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
.|+.|. +||.+...++ ..+...+ ...| ++++|||+|++|+|+|..|++++
T Consensus 155 ~p~~p~~i~G~~~~~~~---~~~~~~~----------~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSIT---SDDIFSL----------SKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceeec---HHHHhhh----------hcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 999884 8986543222 2222211 1123 38999999999999999999877
Q ss_pred hhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCC
Q 013810 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+.+.+|+++++|.|++++|++
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 89999998777788999999999999999999999984 666653 2 3566788889999999999999
Q ss_pred Cc-hhc--ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh------
Q 013810 335 PS-TLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL------ 405 (436)
Q Consensus 335 p~-~~~--~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~------ 405 (436)
|+ +++ +.++++++++|++.+++. + |+.|+|||+|||+.. .+.+++.|++||+.+|+||...
T Consensus 278 pn~~~l~l~~~g~~~~~~G~ii~~~~-~-Ts~p~IyAiGDv~~~--------~~~l~~~A~~~g~~aa~ni~g~~~~~~~ 347 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSNKIIAPND-C-TNIPNIFAVGDVVEG--------RPELTPVAIKAGILLARRLFKQSNEFID 347 (499)
T ss_pred CCccccCchhcCcEECCCCCEeeCCC-c-CCCCCEEEEEEecCC--------CcccHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 99 443 578888888998777766 7 999999999999963 1678999999999999999742
Q ss_pred --cCCceeeecchhHHHHHHHh
Q 013810 406 --ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 406 --~~~~~~~~~~~~~~~~~~~~ 425 (436)
..|+..+.++.+..++++..
T Consensus 348 ~~~~p~~ift~p~ia~vGlte~ 369 (499)
T PTZ00052 348 YTFIPTTIFTPIEYGACGYSSE 369 (499)
T ss_pred cccCCeEEecCCcceeecCCHH
Confidence 13566666888888886654
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=301.41 Aligned_cols=309 Identities=17% Similarity=0.165 Sum_probs=222.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh-----cCcccc---cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC-----VGTLEF---RSVA 117 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~-----~~~~~~---~~~~ 117 (436)
.++||+|||||+||++||..|++.|.+|+|||+++.++......+ .. .|.... .++.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 358999999999999999999999999999998755433211110 00 010000 0000
Q ss_pred cc-------hhhc----chhhhc-CCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 118 EP-------IARI----QPAISR-EPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 118 ~~-------~~~~----~~~~~~-~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.. ..++ .....+ ..++.++.++..-++. +.+.+.. .+|+ .+++.||+||||||++|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRL-HDGG------ERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEe-CCCc------eEEEEeCEEEEecCCCCCCC
Confidence 00 0000 011111 2378888887665553 4555543 2332 12689999999999999999
Q ss_pred CCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 186 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++||.+...+.. . .+. +. ....| ++++|||+|++|+|+|..|.+++
T Consensus 166 ~i~G~~~~~~~~-~-~~~--l~--------~~~~~----------k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPYWT-S-TEA--LF--------SDELP----------ASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCccceec-c-hHH--hc--------cccCC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 999975322111 1 111 11 11123 48999999999999999999876
Q ss_pred CccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeEEE-cCCcEEecceEEEecCCCCch-h--
Q 013810 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKLIL-NDGTEVPYGLLVWSTGVGPST-L-- 338 (436)
Q Consensus 266 ~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v~~-~~g~~i~~D~vi~a~G~~p~~-~-- 338 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +++++ ++.+.+ .++.++++|.||+|+|+.|+. +
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~ 289 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN 289 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC
Confidence 89999999878888899999999999999999999984 77775 333333 233469999999999999993 3
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-------cCCcee
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-------ARNWCW 411 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-------~~~~~~ 411 (436)
++..+++++++|+|.||+++| |+.|+|||+|||+.. +..++.|..||+.||.||+.. ..+++.
T Consensus 290 l~~~g~~~~~~G~i~Vd~~~~-Ts~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~ 359 (479)
T PRK14727 290 LEAVGVTTDTSGAIVVNPAME-TSAPDIYAAGDCSDL---------PQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVI 359 (479)
T ss_pred chhhCceecCCCCEEECCCee-cCCCCEEEeeecCCc---------chhhhHHHHHHHHHHHHHcCCCcccccccCCcEE
Confidence 566788888899999999999 899999999999986 678899999999999999743 234677
Q ss_pred eecchhHHHHHHH
Q 013810 412 FFDVCSLTSILNR 424 (436)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (436)
+++..+..+|++.
T Consensus 360 ~~~p~ia~vGlte 372 (479)
T PRK14727 360 FTDPQVATVGLSE 372 (479)
T ss_pred EecCceeeeeCCH
Confidence 7888888888654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=304.60 Aligned_cols=340 Identities=17% Similarity=0.133 Sum_probs=222.8
Q ss_pred Ccccccccccccc--ccccCCCCCc----cCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSI----IMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAG 74 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AG 74 (436)
+||...|.|+|.. .|+..|.+.. .. -....+.+.++..+..... .....+.+.....++|+||||||||
T Consensus 71 ~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~-~~v~i~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~V~IIG~G~aG 145 (449)
T TIGR01316 71 SLLPAICGRVCPQERQCEGQCTVGKMFKDVG-KPVSIGALERFVADWERQH----GIETEPEKAPSTHKKVAVIGAGPAG 145 (449)
T ss_pred CChhHHhccCCCCccchHhhCcCCCcCCCCC-CCccHHHHHHHHHhHHHhc----CCCcCCCCCCCCCCEEEEECcCHHH
Confidence 4788899999998 8999997654 22 2223444444443221100 0101111122356899999999999
Q ss_pred HHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEE
Q 013810 75 CRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCET 154 (436)
Q Consensus 75 l~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~ 154 (436)
|+||..|++.|++|+|||+++....... .+.+.. .+...+...........++.++.+.+.+ +.+.+.
T Consensus 146 l~aA~~l~~~G~~V~vie~~~~~GG~l~-----~gip~~-~~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~- 213 (449)
T TIGR01316 146 LACASELAKAGHSVTVFEALHKPGGVVT-----YGIPEF-RLPKEIVVTEIKTLKKLGVTFRMNFLVG-----KTATLE- 213 (449)
T ss_pred HHHHHHHHHCCCcEEEEecCCCCCcEee-----ecCCCc-cCCHHHHHHHHHHHHhCCcEEEeCCccC-----CcCCHH-
Confidence 9999999999999999999875432211 011111 1111111111122344678887765431 222221
Q ss_pred ecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCc
Q 013810 155 VTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLH 232 (436)
Q Consensus 155 ~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 232 (436)
+. ...||+||||||+ .|+.+++||.+ .++++..++.....+... ...|... .....+++
T Consensus 214 --~~---------~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~-------~~~~~~~-~~~~~gk~ 274 (449)
T TIGR01316 214 --EL---------FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKA-------YEFPHAD-TPVYAGKS 274 (449)
T ss_pred --HH---------HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhccc-------ccccccC-CcccCCCe
Confidence 11 3469999999998 69999999975 445544443322221110 0000000 00023469
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
|+|||+|++|+|+|..+.+++ .+|+++++... ++.. ....+.+++.||+++.+. +.++
T Consensus 275 VvVIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i 335 (449)
T TIGR01316 275 VVVIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEI 335 (449)
T ss_pred EEEECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEE
Confidence 999999999999999999877 78999998532 2221 223356778899999884 6666
Q ss_pred eC---C---eEEEc---------CC-----------cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCC
Q 013810 310 DS---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPS 362 (436)
Q Consensus 310 ~~---~---~v~~~---------~g-----------~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~ 362 (436)
.. + .|++. +| +++++|.||+++|+.|+ .+++..+++++++|+|.||+++| |+
T Consensus 336 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~-Ts 414 (449)
T TIGR01316 336 IGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQR-TS 414 (449)
T ss_pred EEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCc-cC
Confidence 42 2 23332 22 26999999999999999 57777889999899999999999 89
Q ss_pred CCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 363 VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 363 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|+|||+|||+.. +.++..|+.||+.||.+|..+
T Consensus 415 ~~~VfA~GD~~~g---------~~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 415 IPGVFAGGDIILG---------AATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCCEEEecCCCCC---------cHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999975 678999999999999999764
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=286.79 Aligned_cols=281 Identities=20% Similarity=0.209 Sum_probs=200.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---hcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---CVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
+||+|||||+|||+||..|++.|++|+|||+++. ......... ..+.... -....+........+..++.++..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~gv~~~~~~ 78 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEG-ISGPELMEKMKEQAVKFGAEIIYEE 78 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCC-CChHHHHHHHHHHHHHcCCeEEEEE
Confidence 5899999999999999999999999999998752 111000000 0110000 0001122222223445678887799
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHHhccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
|++++..++.+.+.. .++. ++.||+||+|||+.|+.|++||.+.. ........+ ...
T Consensus 79 v~~v~~~~~~~~v~~-~~~~--------~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~~~------ 138 (300)
T TIGR01292 79 VIKVDLSDRPFKVKT-GDGK--------EYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD-----GPF------ 138 (300)
T ss_pred EEEEEecCCeeEEEe-CCCC--------EEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC-----hhh------
Confidence 999998877665543 2444 79999999999999998999986421 111111100 000
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
..+++|+|||+|++|+|+|..|++.+ .+|+++++.+.+.. ...+.+.+++
T Consensus 139 -----------~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~~-----~~~~~~~l~~ 188 (300)
T TIGR01292 139 -----------FKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFRA-----EKILLDRLRK 188 (300)
T ss_pred -----------cCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccCc-----CHHHHHHHHh
Confidence 22358999999999999999998765 89999998653321 2345556677
Q ss_pred c-CCEEEecc-eEEEeCCe----EEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 297 S-GVRLVRGI-VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 297 ~-gV~i~~~~-v~~i~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
. ||+++.+. +.+++.+. +++. ++ +++++|++++|+|++|+ .+++.+ ++++++|++.||++++ |++|
T Consensus 189 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~-t~~~ 266 (300)
T TIGR01292 189 NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMR-TSVP 266 (300)
T ss_pred CCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCc-cCCC
Confidence 6 99999884 88887542 4443 23 57999999999999998 577776 7778889999999999 8999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
||||+|||+... ++.+..|+.||+.||.+|..+
T Consensus 267 ~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 267 GVFAAGDVRDKG--------YRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CEEEeecccCcc--------hhhhhhhhhhHHHHHHHHHhh
Confidence 999999999831 678999999999999999754
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=299.32 Aligned_cols=306 Identities=20% Similarity=0.237 Sum_probs=211.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------hc-------Ccc-c-ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------CV-------GTL-E-FRSVA 117 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------~~-------~~~-~-~~~~~ 117 (436)
++||+||||||||++||..+++.|.+|+|||++..++......+. .. |.. . ..++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999999999999999975544333111000 00 000 0 00000
Q ss_pred c----------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 118 E----------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 118 ~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
. .+..-...+.+..++.++.++. .++.. +.+.+.. .+++ +.++.||+||||||++|. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~~-~~v~v~~-~~g~------~~~~~~d~lVIATGs~p~--~i 151 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDGV-GKVVVKA-EDGS------ETQLEAKDIVIATGSEPT--PL 151 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccC-CEEEEEc-CCCc------eEEEEeCEEEEeCCCCCC--CC
Confidence 0 0001111123345688887764 44433 3444432 2332 126899999999999885 46
Q ss_pred CCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
||.. ++...+ +..++.. +...| ++++|||+|++|+|+|..+.+++
T Consensus 152 pg~~~~~~~~~-~~~~~~~----------~~~~~----------~~vvIIGgG~ig~E~A~~l~~~G------------- 197 (466)
T PRK06115 152 PGVTIDNQRII-DSTGALS----------LPEVP----------KHLVVIGAGVIGLELGSVWRRLG------------- 197 (466)
T ss_pred CCCCCCCCeEE-CHHHHhC----------CccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6653 222111 1111111 11223 49999999999999999998876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeE--EEc---C--CcEEecceEEEecCCCC
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v--~~~---~--g~~i~~D~vi~a~G~~p 335 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++. +++ .+. + ++++++|.|++++|++|
T Consensus 198 -~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 198 -AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred -CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence 899999984 57888999999999999999999999994 888864 333 232 2 35799999999999999
Q ss_pred c-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc------
Q 013810 336 S-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA------ 406 (436)
Q Consensus 336 ~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~------ 406 (436)
+ .. ++..+++++++| +.||+++| |+.|+|||+|||++. +.+++.|.+||+.||+||+...
T Consensus 277 n~~~l~~~~~g~~~~~~G-~~vd~~~~-Ts~~~IyA~GD~~~~---------~~la~~A~~~g~~aa~~i~~~~~~~~~~ 345 (466)
T PRK06115 277 YTQGLGLETVGLETDKRG-MLANDHHR-TSVPGVWVIGDVTSG---------PMLAHKAEDEAVACIERIAGKAGEVNYG 345 (466)
T ss_pred ccccCCcccccceeCCCC-EEECCCee-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 9 33 456677777777 67899999 999999999999986 6799999999999999998542
Q ss_pred -CCceeeecchhHHHHHHH
Q 013810 407 -RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~ 424 (436)
.|++.+.++.+..++++.
T Consensus 346 ~~p~~~~t~p~ia~vGlte 364 (466)
T PRK06115 346 LIPGVIYTRPEVATVGKTE 364 (466)
T ss_pred CCCeEEECCcccEEeeCCH
Confidence 345555566666666544
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=302.56 Aligned_cols=303 Identities=20% Similarity=0.242 Sum_probs=212.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh---------------------cCcccccccccch
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------------------VGTLEFRSVAEPI 120 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 120 (436)
++||+||||||||++||.+|++.|.+|+|||++. ++......+.. .|.. ......+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--GEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--cCcccCH
Confidence 5899999999999999999999999999999862 11110000000 0000 0000000
Q ss_pred hh--------------cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.. -.....+..++..+.++..-+ +.+.+.+.. .+|+ .+++.||+||||||++|+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~--~~~~v~v~~-~~g~------~~~~~~d~lViATGs~p~~~- 150 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFT--DANTLEVDL-NDGG------TETVTFDNAIIATGSSTRLL- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--CCCEEEEEe-cCCC------eeEEEcCEEEEeCCCCCCCC-
Confidence 00 000111123555555543333 345565543 2332 12689999999999998764
Q ss_pred CCCCc--cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 187 IHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 187 i~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
||.+ ..+++. .+.. .....| ++++|||+|++|+|+|..|++++
T Consensus 151 -pg~~~~~~v~~~---~~~~----------~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G----------- 195 (466)
T PRK07818 151 -PGTSLSENVVTY---EEQI----------LSRELP----------KSIVIAGAGAIGMEFAYVLKNYG----------- 195 (466)
T ss_pred -CCCCCCCcEEch---HHHh----------ccccCC----------CeEEEECCcHHHHHHHHHHHHcC-----------
Confidence 5543 223322 1111 011223 39999999999999999999876
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc--CC--cEEecceEEEecCCC
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVG 334 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~--~g--~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.|+++||+++.++ |++++.+ . +.+. +| +++++|.|++|+|++
T Consensus 196 ---~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 196 ---VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred ---CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcc
Confidence 899999984 67888899999999999999999999995 8888643 2 3443 56 369999999999999
Q ss_pred Cc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-----
Q 013810 335 PS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA----- 406 (436)
Q Consensus 335 p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~----- 406 (436)
|+ .+ ++..+++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||.||....
T Consensus 273 pn~~~l~l~~~g~~~~~~g~i~vd~~~~-Ts~p~IyAiGD~~~~---------~~l~~~A~~~g~~aa~~i~g~~~~~~~ 342 (466)
T PRK07818 273 PRVEGYGLEKTGVALTDRGAIAIDDYMR-TNVPHIYAIGDVTAK---------LQLAHVAEAQGVVAAETIAGAETLELG 342 (466)
T ss_pred cCCCCCCchhcCcEECCCCcEeeCCCcc-cCCCCEEEEeecCCC---------cccHhHHHHHHHHHHHHHcCCCCCccC
Confidence 99 33 577888888889999999999 899999999999975 6799999999999999998532
Q ss_pred ----CCceeeecchhHHHHHHHh
Q 013810 407 ----RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ----~~~~~~~~~~~~~~~~~~~ 425 (436)
.+.+.++++.+..+|++..
T Consensus 343 ~~~~~p~~~~~~p~~a~vGlte~ 365 (466)
T PRK07818 343 DYRMMPRATFCQPQVASFGLTEE 365 (466)
T ss_pred ccCCCCeEEECCCCeEEEeCCHH
Confidence 2345566777777775543
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=279.25 Aligned_cols=283 Identities=18% Similarity=0.194 Sum_probs=211.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcc---eecchhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHM---VFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||||||+||.++++.+.+ ++|+|+...- ...+.. ....|.... .....+.+....+....++.+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~v-enypg~~~~-~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDV-ENYPGFPGG-ILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceee-cCCCCCccC-CchHHHHHHHHHHHhhcCeEEE
Confidence 458999999999999999999999999 6666654222 111111 112222211 1122334444445667888888
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc---cccccccChHHHHHHHHHHHHh
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK---ENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~---~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
...|..++.....+.+.+ .++ ++.+++||||||..++.|.+||.. ...++++..++. .
T Consensus 80 ~~~v~~v~~~~~~F~v~t-~~~---------~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~-------- 140 (305)
T COG0492 80 EDEVEKVELEGGPFKVKT-DKG---------TYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F-------- 140 (305)
T ss_pred EEEEEEEeecCceEEEEE-CCC---------eEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c--------
Confidence 889999987764444442 233 689999999999999999988754 223444444444 2
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
.++++|+|||+|++|+|.|.+|..++ ++|++++|.+.++. .+.+.+.
T Consensus 141 --------------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~ 187 (305)
T COG0492 141 --------------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVER 187 (305)
T ss_pred --------------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHH
Confidence 22348999999999999999999988 89999999766654 2344445
Q ss_pred HHhc-CCEEEecc-eEEEeC---CeEEEcCC----cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 294 LSKS-GVRLVRGI-VKDVDS---QKLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 294 l~~~-gV~i~~~~-v~~i~~---~~v~~~~g----~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
+++. +|+++.+. +.++.+ ..|++.+. +++++|.+++++|..|+ .+++..++ ++++|+|.||+.++ ||+
T Consensus 188 l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~-Tsv 265 (305)
T COG0492 188 LKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEME-TSV 265 (305)
T ss_pred HHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCcc-cCC
Confidence 5555 89999994 999987 46777763 26899999999999999 68888777 88999999999999 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|||+|||+..+ .+++..|..+|..||.++..+..
T Consensus 266 pGifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 266 PGIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CCEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHhh
Confidence 9999999999863 44888999999999998877654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=300.19 Aligned_cols=304 Identities=21% Similarity=0.296 Sum_probs=217.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec------c---hhh-----h-----hhcCcc--------ccccc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------P---LLA-----S-----TCVGTL--------EFRSV 116 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~------~---~~~-----~-----~~~~~~--------~~~~~ 116 (436)
+|+||||||||++||..|++.|.+|+|||+++..+-. | ++. . ...|.. ++..+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 7999999999999999999999999999987532100 1 000 0 001111 11111
Q ss_pred ccc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 117 AEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 117 ~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
... +..-...+.+..++.++.+++..++. +.+.+.. .++. .++.||+||||||++|+.|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~-~~~~-------~~~~~d~lviATGs~p~~~p~~~ 151 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEY-GDKE-------EVVDAEQFIIAAGSEPTELPFAP 151 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEee-CCCc-------EEEECCEEEEeCCCCCCCCCCCC
Confidence 000 00111123345688999998877764 4454432 2332 16899999999999998888887
Q ss_pred Ccc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 190 VKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 190 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
.+. .+++. .++.. +...| ++++|||+|++|+|+|..+.+++ .
T Consensus 152 ~~~~~v~~~---~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g--------------~ 194 (458)
T PRK06912 152 FDGKWIINS---KHAMS----------LPSIP----------SSLLIVGGGVIGCEFASIYSRLG--------------T 194 (458)
T ss_pred CCCCeEEcc---hHHhC----------ccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 642 23322 22221 22223 38999999999999999998765 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--eEEEc-CC--cEEecceEEEecCCCCc-hh--
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPS-TL-- 338 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~v~~~-~g--~~i~~D~vi~a~G~~p~-~~-- 338 (436)
+|+++++. .+++.+++++.+.+.+.|++.||+++++. +.+++.+ .+.+. +| +++++|.|++|+|.+|+ +.
T Consensus 195 ~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~ 274 (458)
T PRK06912 195 KVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLN 274 (458)
T ss_pred eEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCC
Confidence 99999985 57788889999999999999999999995 8888643 34443 44 36999999999999999 33
Q ss_pred cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------CCcee
Q 013810 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------RNWCW 411 (436)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~~~~~ 411 (436)
++..+++.+++| |.||+++| |+.|||||+|||+.. ++++..|..||+.||.||.... .|.+.
T Consensus 275 l~~~gv~~~~~g-i~Vd~~~~-ts~~~VyA~GD~~~~---------~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v 343 (458)
T PRK06912 275 LEKAGVQFSNKG-ISVNEHMQ-TNVPHIYACGDVIGG---------IQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI 343 (458)
T ss_pred chhcCceecCCC-EEeCCCee-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE
Confidence 456677777777 99999999 899999999999975 7899999999999999997422 23455
Q ss_pred eecchhHHHHHHHh
Q 013810 412 FFDVCSLTSILNRL 425 (436)
Q Consensus 412 ~~~~~~~~~~~~~~ 425 (436)
++++.+..++++..
T Consensus 344 ~~~p~~a~vGlte~ 357 (458)
T PRK06912 344 YTSPEIASVGLTEK 357 (458)
T ss_pred ecCchhEEeeCCHH
Confidence 56777777776553
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=311.83 Aligned_cols=336 Identities=15% Similarity=0.153 Sum_probs=222.2
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.++|...|+..|.+..... ......+.++..+...... .... ..+......++|+|||||||||+||.+
T Consensus 482 nPlP~icGrVCph~Ce~~C~R~~~d~-pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 482 NALPAITGHICDHQCQYNCTRLDYDE-AVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred CChhhHhhCcCCchhHHHhcCCCCCC-CeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 57888999999999999998876544 3344555555543321100 0010 011112356899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+..+.... .+.+... +...............++.++.+....++. . +..
T Consensus 558 Lar~G~~VtV~Ek~~~~GG~lr-----~~IP~~R-lp~evL~~die~l~~~GVe~~~gt~Vdi~l-------e---~L~- 620 (1019)
T PRK09853 558 LARAGHPVTVFEREENAGGVVK-----NIIPQFR-IPAELIQHDIEFVKAHGVKFEFGCSPDLTV-------E---QLK- 620 (1019)
T ss_pred HHHcCCeEEEEecccccCccee-----eeccccc-ccHHHHHHHHHHHHHcCCEEEeCceeEEEh-------h---hhe-
Confidence 9999999999999876543211 0111111 111111111122334578887764322221 1 121
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G 239 (436)
...||+||||||+. +..+++||.++++++..++ ...+.+. .. ....+++|+|||||
T Consensus 621 -------~~gYDaVILATGA~~~~~l~IpG~~~gV~saldf--L~~~k~~-------~~-------~~~~GKrVVVIGGG 677 (1019)
T PRK09853 621 -------NEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPF--LEEYKNK-------GT-------ALKLGKHVVVVGGG 677 (1019)
T ss_pred -------eccCCEEEECcCCCCCCCCCCCCccCCceehHHH--HHHHhhh-------cc-------cccCCCEEEEECCC
Confidence 45699999999997 4556788865444432221 1111110 00 00234699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC-CeE-
Q 013810 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-QKL- 314 (436)
Q Consensus 240 ~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-~~v- 314 (436)
++|+|+|..+.+.+ ...+|+++++. ..++..++++. +.+ +.||+++... +.+++. +.+
T Consensus 678 nVAmD~Ar~a~Rlg------------GakeVTLVyRr~~~~MPA~~eEle----~Al-eeGVe~~~~~~p~~I~~dG~l~ 740 (1019)
T PRK09853 678 NTAMDAARAALRVP------------GVEKVTVVYRRTKQEMPAWREEYE----EAL-EDGVEFKELLNPESFDADGTLT 740 (1019)
T ss_pred hHHHHHHHHHHhcC------------CCceEEEEEccCcccccccHHHHH----HHH-HcCCEEEeCCceEEEEcCCcEE
Confidence 99999999887653 11589999985 34555544433 333 4699999873 666642 212
Q ss_pred ------------------EEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 315 ------------------ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 315 ------------------~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
...++.++++|.||+|+|..|+ +++...|++++++|++.||++++ |+.|+|||+|||+..
T Consensus 741 ~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlq-Ts~pgVFAaGD~a~G 819 (1019)
T PRK09853 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGE-TSLTNVYMIGDVQRG 819 (1019)
T ss_pred EEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcc-cCCCCEEEEeccccC
Confidence 1123457999999999999999 67888899888899999999999 899999999999976
Q ss_pred ccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 376 LESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.++..|+.||+.||++|.....
T Consensus 820 ---------p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 820 ---------PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred ---------chHHHHHHHHHHHHHHHHhhhcC
Confidence 77899999999999999986543
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=300.87 Aligned_cols=308 Identities=24% Similarity=0.290 Sum_probs=215.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~------~~~~ 114 (436)
..+||+||||||||++||.+|++.|.+|+|||+. .++.+....+. ..|. .++.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3589999999999999999999999999999986 33222110000 0000 0110
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCC-----CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~-----~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
.+.. .+......+.+..++.++.++++.++.. .+.+.+.. .+|+ ..++.||+||||||++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~-~~g~------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVET-ETGE------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEe-CCCc------eEEEEcCEEEEeCCCCC
Confidence 1000 0111111234456899999999988876 33555543 2331 11789999999999998
Q ss_pred CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 183 ~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
..++....+ ..++ +..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 155 ~~~p~~~~~~~~~~---~~~~~~~----------~~~~~----------~~vvIIGgG~~G~E~A~~l~~~g-------- 203 (472)
T PRK05976 155 VELPGLPFDGEYVI---SSDEALS----------LETLP----------KSLVIVGGGVIGLEWASMLADFG-------- 203 (472)
T ss_pred CCCCCCCCCCceEE---cchHhhC----------ccccC----------CEEEEECCCHHHHHHHHHHHHcC--------
Confidence 754322221 1122 2222221 11223 39999999999999999999876
Q ss_pred cCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe---CCeE---EEcCC--cEEecceEEEec
Q 013810 262 SHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD---SQKL---ILNDG--TEVPYGLLVWST 331 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~---~~~v---~~~~g--~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++ .+++ .+.+| +++++|.+++|+
T Consensus 204 ------~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 204 ------VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSV 277 (472)
T ss_pred ------CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEee
Confidence 899999985 57788899999999999999999999995 88886 3433 23466 369999999999
Q ss_pred CCCCch-h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--
Q 013810 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-- 406 (436)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-- 406 (436)
|.+|+. . ++..++.. .+|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||.||....
T Consensus 278 G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~-ts~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~ 346 (472)
T PRK05976 278 GRRPNTEGIGLENTDIDV-EGGFIQIDDFCQ-TKERHIYAIGDVIGE---------PQLAHVAMAEGEMAAEHIAGKKPR 346 (472)
T ss_pred CCccCCCCCCchhcCcee-cCCEEEECCCcc-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCC
Confidence 999993 2 34445544 468999999999 899999999999975 6789999999999999997432
Q ss_pred ------CCceeeecchhHHHHHHH
Q 013810 407 ------RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ------~~~~~~~~~~~~~~~~~~ 424 (436)
.+.+.++++.+..+|++.
T Consensus 347 ~~~~~~~p~~~~~~p~~a~vG~te 370 (472)
T PRK05976 347 PFDYAAIPACCYTDPEVASVGLTE 370 (472)
T ss_pred CCCCCCCCEEEECcCceEEEeCCH
Confidence 344556677666665443
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=286.30 Aligned_cols=288 Identities=19% Similarity=0.173 Sum_probs=202.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc---ceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
..+||+|||||||||+||.+|++.|+++++||.... +.+.+...... +....... ..+.+.........+..+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTG-PLLMERMHEHATKFETEIIF 82 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCH-HHHHHHHHHHHHHCCCEEEe
Confidence 458999999999999999999999999999985422 11111111111 11100000 11122222223334556666
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
++|+.++...+.+.+.. +.. .+.||+||||||+.|+.|++||.+. ..++.....+...
T Consensus 83 ~~v~~v~~~~~~~~v~~--~~~--------~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~--------- 143 (321)
T PRK10262 83 DHINKVDLQNRPFRLTG--DSG--------EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFF--------- 143 (321)
T ss_pred eEEEEEEecCCeEEEEe--cCC--------EEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHH---------
Confidence 77888888777776643 222 6899999999999999999998642 1122111111110
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|++.+ ++|+++++.+.+. .++.+.+.+.+.|
T Consensus 144 -------------~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~l 195 (321)
T PRK10262 144 -------------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKV 195 (321)
T ss_pred -------------cCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhhc
Confidence 22359999999999999999999876 8999999965332 3466778888899
Q ss_pred HhcCCEEEecc-eEEEeCC-----eEEEcCC------cEEecceEEEecCCCCch-hcccCCCCCCCCCcEEeCC-----
Q 013810 295 SKSGVRLVRGI-VKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDE----- 356 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~-----~v~~~~g------~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~----- 356 (436)
++.||+++.+. +++++++ .|++.++ +++++|.|++++|++|+. ++. .++.++ +|+|.||+
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~-~~l~~~-~g~i~vd~~~~~~ 273 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGN 273 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhh-cccccc-CCEEEECCCCccc
Confidence 99999999984 8888764 3555432 369999999999999994 444 356554 58999997
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
+++ |++|+|||+|||++.+ .++...|+.+|..||..|..+..+
T Consensus 274 ~~~-t~~~~VyA~GD~~~~~--------~~~~~~A~~~g~~Aa~~~~~~l~~ 316 (321)
T PRK10262 274 ATQ-TSIPGVFAAGDVMDHI--------YRQAITSAGTGCMAALDAERYLDG 316 (321)
T ss_pred ccc-cCCCCEEECeeccCCC--------cceEEEEehhHHHHHHHHHHHHHh
Confidence 567 9999999999999742 456677999999999999876543
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=295.13 Aligned_cols=310 Identities=19% Similarity=0.276 Sum_probs=239.2
Q ss_pred HHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEE-EeEeEeEeCCCCEEE
Q 013810 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHVVH 151 (436)
Q Consensus 76 ~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~id~~~~~v~ 151 (436)
+||.+|++. +++|+|||+++++.|.|. ++....+...... ..+......+....++.++ .++|+.+|++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRN--KLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHH--HcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 478888875 478999999999988773 5544444322111 0011111223345678875 469999999999888
Q ss_pred EEEecCCcccCCCCceeee--ccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhc
Q 013810 152 CETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKS 228 (436)
Q Consensus 152 ~~~~~~g~~~~~~~~~~~~--~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 228 (436)
+....++. .+. ||+||||||++|+.|++||.+ +.++...++.++..++..+.. .
T Consensus 79 ~~~~~~~~--------~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~---------------~ 135 (427)
T TIGR03385 79 VRNNKTNE--------TYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK---------------N 135 (427)
T ss_pred EEECCCCC--------EEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh---------------c
Confidence 76432233 566 999999999999999999986 667888888888877776521 2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCcccHHHHHHHHHHHHhcCCEEEecc-
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQLSKSGVRLVRGI- 305 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~-l~~~~~~~~~~~~~~l~~~gV~i~~~~- 305 (436)
.+++|+|||+|++|+|+|..|++.+ .+|+++++.+ + .+.+++++.+.+.+.|++.||+++.+.
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~ 201 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEE 201 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCE
Confidence 2358999999999999999998765 8999999864 4 367888899999999999999999984
Q ss_pred eEEEeCCe--EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccC-CCC
Q 013810 306 VKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGK 381 (436)
Q Consensus 306 v~~i~~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~-~~~ 381 (436)
+.+++.+. +.+.+|+++++|.+++|+|.+|+ ++++.++++++++|+|.||+++| |+.|+|||+|||+..+.. .++
T Consensus 202 v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~-t~~~~Vya~GD~~~~~~~~~~~ 280 (427)
T TIGR03385 202 VDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQ-TSVPNIYAAGDVAESHNIITKK 280 (427)
T ss_pred EEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcE-eCCCCEEEeeeeEEeeeccCCC
Confidence 88887643 36778889999999999999999 68888999999899999999999 899999999999987653 444
Q ss_pred ccCCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHHHHh
Q 013810 382 TVLPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 382 ~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~~~~ 425 (436)
+..++++..|.+||+.||+||.... .+.+.+++..+..+|++..
T Consensus 281 ~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~ 332 (427)
T TIGR03385 281 PAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTEN 332 (427)
T ss_pred ceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHH
Confidence 4446789999999999999997532 2345567888888886543
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=300.34 Aligned_cols=344 Identities=18% Similarity=0.135 Sum_probs=225.4
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|.. .|+..|.+.....+. ....+.++..+..... ... ...+.....++|+|||||||||+||
T Consensus 83 np~p~~~grvC~~~~~Ce~~C~r~~~~~~v-~I~~l~r~~~~~~~~~----~~~-~~~~~~~~~~~V~IIG~GpAGl~aA 156 (464)
T PRK12831 83 NALPAVCGRVCPQESQCEGKCVLGIKGEPV-AIGKLERFVADWAREN----GID-LSETEEKKGKKVAVIGSGPAGLTCA 156 (464)
T ss_pred CCchhhhhccCCCCCChHHHhcCCCCCCCe-ehhHHHHHHHHHHHHc----CCC-CCCCcCCCCCEEEEECcCHHHHHHH
Confidence 4788899999997 899999887654333 3444555554322111 111 1112234568999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+.... .+.+.+......+...........++.++.+.... +.+.+. +.
T Consensus 157 ~~l~~~G~~V~v~e~~~~~GG~l~-----~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~-----~~v~~~---~~ 223 (464)
T PRK12831 157 GDLAKMGYDVTIFEALHEPGGVLV-----YGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVG-----KTVTID---EL 223 (464)
T ss_pred HHHHhCCCeEEEEecCCCCCCeee-----ecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-----CcCCHH---HH
Confidence 999999999999998765432210 11111110011122111222344578877765332 112211 11
Q ss_pred cccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ..+.||+||||||+ .|+.+++||.+ .++++..++.....+.... . +... .....+++|+||
T Consensus 224 ~-------~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~----~----~~~~-~~~~~gk~VvVI 287 (464)
T PRK12831 224 L-------EEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAY----K----PEYD-TPIKVGKKVAVV 287 (464)
T ss_pred H-------hccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccc----c----cccc-CcccCCCeEEEE
Confidence 1 04579999999999 69999999976 5566554444332211100 0 0000 001234699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++|+|+|..+.+++ .+|+++++.. .++....++ +.+.+.||+++++. +.++..
T Consensus 288 GgG~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~ 348 (464)
T PRK12831 288 GGGNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDE 348 (464)
T ss_pred CCcHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecC
Confidence 99999999999999887 7899999843 233322221 23567899999884 666632
Q ss_pred -Ce---EEEc------------------CCc--EEecceEEEecCCCCc-hhccc-CCCCCCCCCcEEeCCC-CCCCCCC
Q 013810 312 -QK---LILN------------------DGT--EVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEW-LRVPSVQ 364 (436)
Q Consensus 312 -~~---v~~~------------------~g~--~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~-~~~t~~~ 364 (436)
+. |++. +|+ ++++|.||+++|+.|+ .++.. .+++++++|+|.||++ ++ |+.|
T Consensus 349 ~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~-Ts~p 427 (464)
T PRK12831 349 NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGL-TSKE 427 (464)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCc-cCCC
Confidence 12 2221 222 5999999999999999 45555 6888888899999998 78 9999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
+|||+|||+.. +.++..|+.+|+.||.+|..+..+
T Consensus 428 gVfAaGD~~~g---------~~~v~~Ai~~G~~AA~~I~~~L~~ 462 (464)
T PRK12831 428 GVFAGGDAVTG---------AATVILAMGAGKKAAKAIDEYLSK 462 (464)
T ss_pred CEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999986 678999999999999999877643
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=276.87 Aligned_cols=294 Identities=22% Similarity=0.360 Sum_probs=241.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.+.++|||||++|..|+.++++.|+ +++|+-++.+++|. |.++....- ....++...+.+++..++.++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~------~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLT------VGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceee------ccccccccChhhHhhcCceEEEc
Confidence 5789999999999999999999886 48899888887775 344333211 11233334445677888988775
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
.|+++|...+++.+. +|+ .+.|++|+||||+.++.+++||.+ +++.++++++++..+...+
T Consensus 148 t~v~~~D~~~K~l~~~---~Ge--------~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~------ 210 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLG---NGE--------TLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAI------ 210 (478)
T ss_pred ceeEEeeccccEEEeC---CCc--------eeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHh------
Confidence 999999999999875 676 899999999999999999999998 7888999999998887765
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~~l 294 (436)
....+|+++|+|.+|+|+|.+|.... .+||++++.+ .++ -+.+.+.+.+++++
T Consensus 211 -----------~~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 211 -----------QLGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred -----------ccCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 23458999999999999999998654 9999999953 444 67899999999999
Q ss_pred HhcCCEEEecc-eEEEeCC------eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCE
Q 013810 295 SKSGVRLVRGI-VKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~------~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~V 366 (436)
+++||+++.++ +.+++.+ .|.+.||++++||+|++.+|.+|+ .+++. +..+++.|+|.||+++| |++|||
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~-t~~~~V 343 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQ-TSVPNV 343 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhcee-eccCCc
Confidence 99999999996 7777653 377899999999999999999999 57666 77778999999999999 899999
Q ss_pred EEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 367 FAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 367 ya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
||+||++..+.+ .+.......+..|..+|+.+...|...
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~ 383 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMA 383 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhcc
Confidence 999999998774 333333678889999999877776543
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=297.14 Aligned_cols=306 Identities=20% Similarity=0.234 Sum_probs=215.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcC------CCcceec-------ch---hh-----hh------hcCccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA-----ST------CVGTLEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~------~~~~~~~-------~~---~~-----~~------~~~~~~~~ 114 (436)
.+||+||||||||++||.++++.|.+|+|||+ ...+... |. +. .. ..|.. ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~-~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH-VD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc-CC
Confidence 58999999999999999999999999999998 1222111 10 00 00 00000 00
Q ss_pred c----ccc----------chhhcchhhhcCCCcEEEEeEeEeEeCC--CCEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 115 S----VAE----------PIARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 115 ~----~~~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~--~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
. +.. .+......+.+..++.++.+++..++.. ...+.+.. .++. +++||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~-~~~~--------~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTG-EDET--------VITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEec-CCCe--------EEEeCEEEEeC
Confidence 0 000 0011112234456889999888777643 34454431 1233 79999999999
Q ss_pred CCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 179 GAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 179 G~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
|++|+.++..+.+ ..++.. .++.. +...| ++|+|||+|++|+|+|..|.+++
T Consensus 154 Gs~p~~~p~~~~~~~~~~~~---~~~~~----------~~~~~----------~~vvVvGgG~~g~E~A~~l~~~g---- 206 (475)
T PRK06327 154 GSEPRHLPGVPFDNKIILDN---TGALN----------FTEVP----------KKLAVIGAGVIGLELGSVWRRLG---- 206 (475)
T ss_pred CCCCCCCCCCCCCCceEECc---HHHhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC----
Confidence 9999754322222 222211 11111 11123 49999999999999999998776
Q ss_pred HhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeCC--e--EEEcC--C--cEEecceE
Q 013810 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLL 327 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~~--~--v~~~~--g--~~i~~D~v 327 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++.+ . +.+.+ | +++++|.|
T Consensus 207 ----------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~v 276 (475)
T PRK06327 207 ----------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKL 276 (475)
T ss_pred ----------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEE
Confidence 899999985 5677788999999999999999999998 48888642 3 34444 3 46999999
Q ss_pred EEecCCCCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 328 VWSTGVGPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 328 i~a~G~~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++++|++|+ + .++.++++++++|+|.||+++| |+.|+|||+|||+.. +.++..|..||+.||.||..
T Consensus 277 l~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~-Ts~~~VyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 277 IVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCR-TNVPNVYAIGDVVRG---------PMLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred EEccCCccCCCCCCcHhhCceeCCCCeEeECCCCc-cCCCCEEEEEeccCC---------cchHHHHHHHHHHHHHHHcC
Confidence 999999999 4 3466788889999999999999 899999999999985 67899999999999999985
Q ss_pred hc-------CCceeeecchhHHHHHHH
Q 013810 405 LA-------RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 405 ~~-------~~~~~~~~~~~~~~~~~~ 424 (436)
.. .++..++++.+..+|++.
T Consensus 347 ~~~~~~~~~~p~~~~~~pe~a~vGlte 373 (475)
T PRK06327 347 QKGHIDYNTIPWVIYTSPEIAWVGKTE 373 (475)
T ss_pred CCCCCCCCCCCeEEeCCcceEEEeCCH
Confidence 33 345555677666666544
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=300.06 Aligned_cols=303 Identities=24% Similarity=0.283 Sum_probs=212.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----------h-----hh---h--cC------ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----------A-----ST---C--VG------TLEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----------~-----~~---~--~~------~~~~~ 114 (436)
.++||+||||||||++||.+|++.|.+|+|||++ .++..... . .. . .| ..+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 4589999999999999999999999999999984 33221110 0 00 0 00 00111
Q ss_pred ccccchhhcc--------hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.+........ .......++.++.+++..++. +.+.+ ++. ++.||+||||||+. .|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v----~~~--------~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV----NGE--------RIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE----CcE--------EEEeCEEEEeCCCC--CCC
Confidence 1111111110 111234567777776665543 34443 343 79999999999999 556
Q ss_pred CCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
+||... ......+..+...+ ...| ++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~~~~----------k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------DKLP----------KSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------cccC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 777531 11111122222211 1122 49999999999999999999876
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---eEEE--cCC--cEEecceEEEecCCCCc
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---~v~~--~~g--~~i~~D~vi~a~G~~p~ 336 (436)
.+|+++++. .+++.+++++.+.+.+.|++. |+++.+. +.+++.+ .+++ .++ +++++|.|++++|.+|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999995 577888999999999999999 9999984 8888642 3553 233 56999999999999999
Q ss_pred -h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh-c------
Q 013810 337 -T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL-A------ 406 (436)
Q Consensus 337 -~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~------ 406 (436)
+ .++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||.||... .
T Consensus 270 ~~~l~l~~~g~~~~~~g~i~vd~~~~-ts~~~IyA~GD~~~~---------~~~~~~A~~qg~~aa~~i~~~~~~~~~~~ 339 (460)
T PRK06292 270 TDGLGLENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGK---------PPLLHEAADEGRIAAENAAGDVAGGVRYH 339 (460)
T ss_pred CCCCCcHhhCCEecCCCcEeECCCcc-cCCCCEEEEEecCCC---------ccchhHHHHHHHHHHHHhcCCCCCCcCCC
Confidence 4 3567888888899999999999 899999999999985 678999999999999999863 1
Q ss_pred -CCceeeecchhHHHHHHHh
Q 013810 407 -RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~ 425 (436)
.|...+.+..+..+|++..
T Consensus 340 ~~p~~~~~~~~~a~vG~te~ 359 (460)
T PRK06292 340 PIPSVVFTDPQIASVGLTEE 359 (460)
T ss_pred CCCeEEECCCccEEeECCHH
Confidence 2234444666666665543
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=295.92 Aligned_cols=301 Identities=21% Similarity=0.248 Sum_probs=216.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh-----cCcccccccccchh-
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC-----VGTLEFRSVAEPIA- 121 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~~~- 121 (436)
+||+||||||||++||.+|++.|.+|+|||+ +.++......+ .. .+. ..........
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGI-EVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCC-CCCCCcCCHHH
Confidence 7999999999999999999999999999998 44432210000 00 000 0000000000
Q ss_pred -------------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 122 -------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 122 -------------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
.....+.+..++.++.+++..++. +.+.+... ++. .++.||+||||||++|+.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~-~g~-------~~~~~d~lVlAtG~~p~~~~~~ 149 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDP--GTVLVTGE-NGE-------ETLTAKNIIIATGSRPRSLPGP 149 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecC-CCc-------EEEEeCEEEEcCCCCCCCCCCC
Confidence 001122344678888888876664 44544421 221 1789999999999999988876
Q ss_pred -CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 189 -GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 189 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
+.+.. .+.+..+...+ ...| ++++|||+|.+|+|+|..|.+.+
T Consensus 150 ~~~~~~--~~~~~~~~~~~----------~~~~----------~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (461)
T TIGR01350 150 FDFDGE--VVITSTGALNL----------KEVP----------ESLVIIGGGVIGIEFASIFASLG-------------- 193 (461)
T ss_pred CCCCCc--eEEcchHHhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 43221 12222332221 1122 48999999999999999998766
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCC--cEEecceEEEecCCCCc-h-
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDG--TEVPYGLLVWSTGVGPS-T- 337 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g--~~i~~D~vi~a~G~~p~-~- 337 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. +.+++ ++.+ .+.+| +++++|.+++|+|.+|+ .
T Consensus 194 ~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~ 273 (461)
T TIGR01350 194 SKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEG 273 (461)
T ss_pred CcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCC
Confidence 899999995 57788889999999999999999999994 88775 3444 34466 47999999999999999 4
Q ss_pred -hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--------CC
Q 013810 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--------RN 408 (436)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~ 408 (436)
+++..+++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.+|+||.... .+
T Consensus 274 l~~~~~gl~~~~~g~i~vd~~l~-t~~~~IyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 343 (461)
T TIGR01350 274 LGLENLGVELDERGRIVVDEYMR-TNVPGIYAIGDVIGG---------PMLAHVASHEGIVAAENIAGKEPAPIDYDAVP 343 (461)
T ss_pred CCcHhhCceECCCCcEeeCCCcc-cCCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 4678888889899999999999 899999999999985 6789999999999999997532 34
Q ss_pred ceeeecchhHHHH
Q 013810 409 WCWFFDVCSLTSI 421 (436)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (436)
.+.+++..+..++
T Consensus 344 ~~~~~~~~~a~vG 356 (461)
T TIGR01350 344 SCIYTDPEVASVG 356 (461)
T ss_pred eEEecCCceEEEe
Confidence 5555666665555
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=290.47 Aligned_cols=301 Identities=21% Similarity=0.265 Sum_probs=212.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-------ch---h-----hhhh-----cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---L-----ASTC-----VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-------~~---~-----~~~~-----~~~------~~~~~ 115 (436)
++||+|||+||||..||..+ .|.+|+|||++. ++.. |. + .... .|. .++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 48999999999999987554 699999999853 2211 10 0 0000 010 01111
Q ss_pred cccchh-----hcc---hhh-h--cCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 116 VAEPIA-----RIQ---PAI-S--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 116 ~~~~~~-----~~~---~~~-~--~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..... .+. ... . +..+++++.+...-. +.+.+.+. +|. +++||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~---~g~--------~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTG---DGE--------EITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEEC---CCc--------EEEeCEEEEEECCCCCC
Confidence 111110 000 011 1 225788887765444 34556552 454 78999999999999988
Q ss_pred CCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 185 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
|++.+.. . ..+.+.+++.++.. .| ++++|||+|++|+|+|..|++++
T Consensus 146 p~~~~~~-~-~~~~~~~~~~~l~~----------~~----------k~vvVIGgG~ig~E~A~~l~~~G----------- 192 (452)
T TIGR03452 146 PPAIADS-G-VRYHTNEDIMRLPE----------LP----------ESLVIVGGGYIAAEFAHVFSALG----------- 192 (452)
T ss_pred CCCCCCC-C-CEEEcHHHHHhhhh----------cC----------CcEEEECCCHHHHHHHHHHHhCC-----------
Confidence 8754432 2 23345555554332 12 38999999999999999998876
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc-h
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.+ +.+|+++.+. |.+++. +. +.+.+|+++++|.|++++|++|+ .
T Consensus 193 ---~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 193 ---TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred ---CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 899999995 567788899888887755 4689999884 888863 33 45567888999999999999999 4
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc---------
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--------- 406 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------- 406 (436)
+ ++..|++++++|+|.||+++| |+.|+|||+|||+.. +++++.|.+||+.+|+||....
T Consensus 269 ~l~~~~~gl~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~ 338 (452)
T TIGR03452 269 LLDAEAAGVEVDEDGRIKVDEYGR-TSARGVWALGDVSSP---------YQLKHVANAEARVVKHNLLHPNDLRKMPHDF 338 (452)
T ss_pred CcCchhcCeeECCCCcEeeCCCcc-cCCCCEEEeecccCc---------ccChhHHHHHHHHHHHHhcCCCCcccCCCCC
Confidence 4 456788888899999999999 999999999999985 6789999999999999997432
Q ss_pred CCceeeecchhHHHHHHHh
Q 013810 407 RNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~ 425 (436)
.|++.+++..+..+|++..
T Consensus 339 ~p~~i~t~p~ia~vGlte~ 357 (452)
T TIGR03452 339 VPSAVFTHPQIATVGLTEQ 357 (452)
T ss_pred CCeEEECCCCeeeeeCCHH
Confidence 3455556777777776554
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=294.38 Aligned_cols=210 Identities=19% Similarity=0.199 Sum_probs=163.6
Q ss_pred eeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHH
Q 013810 168 KISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (436)
Q Consensus 168 ~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A 246 (436)
++.||+||||||++|..|++++.+ ..+++. .++..+. ..| ++|+|||+|++|+|+|
T Consensus 272 ~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts---~d~~~l~----------~lp----------k~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 272 EFKVKNIIIATGSTPNIPDNIEVDQKSVFTS---DTAVKLE----------GLQ----------NYMGIVGMGIIGLEFM 328 (659)
T ss_pred EEECCEEEEcCCCCCCCCCCCCCCCCcEEeh---HHhhhhh----------hcC----------CceEEECCCHHHHHHH
Confidence 789999999999999988876654 234432 3333221 123 3899999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHH-HhcCCEEEecc-eEEEeCC----eEEE--c
Q 013810 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRGI-VKDVDSQ----KLIL--N 317 (436)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~i~~~~-v~~i~~~----~v~~--~ 317 (436)
..|++++ .+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+. |.+++.+ .+.+ .
T Consensus 329 ~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~ 394 (659)
T PTZ00153 329 DIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHS 394 (659)
T ss_pred HHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEe
Confidence 9998876 899999984 678889999999888875 67899999995 8888642 1432 2
Q ss_pred C-------C--------cEEecceEEEecCCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCC------CCCEEEecccc
Q 013810 318 D-------G--------TEVPYGLLVWSTGVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPS------VQDVFAVGDCS 373 (436)
Q Consensus 318 ~-------g--------~~i~~D~vi~a~G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~------~~~Vya~GD~~ 373 (436)
+ + +++++|.||+|+|++|+ +. ++..+++.+ +|+|.||++|| |+ +|+|||+|||+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lq-Ts~~~~~~v~~IYAiGDv~ 472 (659)
T PTZ00153 395 ERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLR-VLREDQEVYDNIFCIGDAN 472 (659)
T ss_pred ccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCC-cCCCCCCCCCCEEEEEecC
Confidence 1 1 26999999999999999 33 456777776 48999999999 65 69999999999
Q ss_pred ccccCCCCccCCccHHHHHHHHHHHHhhhhhh--------------------cCCceeeecchhHHHHHHHh
Q 013810 374 GYLESTGKTVLPALAQVSYEQLHLFQKPSFLL--------------------ARNWCWFFDVCSLTSILNRL 425 (436)
Q Consensus 374 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--------------------~~~~~~~~~~~~~~~~~~~~ 425 (436)
+. +++++.|..||+.||+||... ..|+..++++.+..+|++..
T Consensus 473 g~---------~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~ 535 (659)
T PTZ00153 473 GK---------QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEK 535 (659)
T ss_pred CC---------ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEeeCCHH
Confidence 75 679999999999999999754 12345577777777776554
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=291.36 Aligned_cols=337 Identities=18% Similarity=0.143 Sum_probs=217.6
Q ss_pred Cccccccccccccc--cccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|... |...|.......+. ..+++.++...... ..... .+.......++|+|||||||||++|
T Consensus 83 ~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v-~i~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~VvIIGgGpaGl~aA 156 (457)
T PRK11749 83 NPLPAVCGRVCPQERLCEGACVRGKKGEPV-AIGRLERYITDWAM----ETGWV-LFKRAPKTGKKVAVIGAGPAGLTAA 156 (457)
T ss_pred CCchhhhcCcCCCccCHHHHhcCCCCCCCc-chHHHHHHHHHHHH----hcCCC-CCCCCccCCCcEEEECCCHHHHHHH
Confidence 57888999999988 88887654332222 33333333321110 00000 0111123457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|||+.+.+..... .+.+... ....+...........++.++.+.... ..+.+ ++
T Consensus 157 ~~l~~~g~~V~lie~~~~~gG~l~-----~gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~----~~ 221 (457)
T PRK11749 157 HRLARKGYDVTIFEARDKAGGLLR-----YGIPEFR-LPKDIVDREVERLLKLGVEIRTNTEVG-----RDITL----DE 221 (457)
T ss_pred HHHHhCCCeEEEEccCCCCCcEee-----ccCCCcc-CCHHHHHHHHHHHHHcCCEEEeCCEEC-----CccCH----HH
Confidence 999999999999999876432111 0111111 111111111222334578887765431 11211 11
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. .+.||+||||||+. ++.+++||.+ .++++..++........ ..... ..+++|+||
T Consensus 222 ~--------~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~------~~~~~--------~~g~~VvVi 279 (457)
T PRK11749 222 L--------RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAV------ADYDL--------PVGKRVVVI 279 (457)
T ss_pred H--------HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcc------ccccC--------CCCCeEEEE
Confidence 1 46799999999995 7778899875 33333322211111000 00000 134599999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCe
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQK 313 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~ 313 (436)
|+|++|+|+|..+.+++ ..+|+++++.. .++.... ..+.+++.||+++.+. +.++.++.
T Consensus 280 GgG~~g~e~A~~l~~~G-------------~~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~ 341 (457)
T PRK11749 280 GGGNTAMDAARTAKRLG-------------AESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDE 341 (457)
T ss_pred CCCHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecC
Confidence 99999999999998765 14899999843 3333222 2456778999999984 77775432
Q ss_pred -----EEEc-------------------CCcEEecceEEEecCCCCc-hhcc-cCCCCCCCCCcEEeCC-CCCCCCCCCE
Q 013810 314 -----LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SLDLPKSPGGRIGIDE-WLRVPSVQDV 366 (436)
Q Consensus 314 -----v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~~l~~~~~G~i~vd~-~~~~t~~~~V 366 (436)
|++. +++++++|.||+++|++|+ .++. ..++.++++|+|.||+ +++ |+.|+|
T Consensus 342 ~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~-Ts~~~V 420 (457)
T PRK11749 342 GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGR-TSLPGV 420 (457)
T ss_pred CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCc-cCCCCE
Confidence 5442 2346999999999999999 4443 5678888899999998 677 999999
Q ss_pred EEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 367 FAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 367 ya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
||+|||+.. ++++..|+.||+.||.+|..+..+
T Consensus 421 fA~GD~~~~---------~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 421 FAGGDIVTG---------AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred EEeCCcCCC---------chHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999975 678999999999999999876544
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=294.63 Aligned_cols=285 Identities=18% Similarity=0.211 Sum_probs=199.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch----hhhhhcCcccccccccchhhcchhhhcCCCcEE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
...+||+||||||||++||.+|++.|++|+||++. ++.++. +... .+... .. ...+.+......+..++.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~-~~-~~~l~~~l~~~l~~~gv~i 284 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENL-ISVPY-TT-GSQLAANLEEHIKQYPIDL 284 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccc-cccCC-CC-HHHHHHHHHHHHHHhCCeE
Confidence 34689999999999999999999999999999753 221111 1100 01100 01 1112222222233457887
Q ss_pred EE-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhc
Q 013810 136 FL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 136 ~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
+. .+|+.++.+.+.+.+.. .++. .+.||+||+|||+.++.|++||.... ..........+...+
T Consensus 285 ~~~~~V~~I~~~~~~~~v~~-~~g~--------~i~~d~lIlAtGa~~~~~~ipG~~~~--~~~~v~~~~~~~~~~---- 349 (515)
T TIGR03140 285 MENQRAKKIETEDGLIVVTL-ESGE--------VLKAKSVIVATGARWRKLGVPGEKEY--IGKGVAYCPHCDGPF---- 349 (515)
T ss_pred EcCCEEEEEEecCCeEEEEE-CCCC--------EEEeCEEEECCCCCcCCCCCCCHHHc--CCCeEEEeeccChhh----
Confidence 76 48888887665555432 3454 79999999999999999999986321 111000000000000
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|+.++ .+|+++++.+.+. ....+.+.+
T Consensus 350 -------------~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~~l 397 (515)
T TIGR03140 350 -------------FKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQDKL 397 (515)
T ss_pred -------------cCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHHHH
Confidence 22359999999999999999998776 8999999854332 123456667
Q ss_pred Hh-cCCEEEecc-eEEEeCC-----eEEEcC---C--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCC
Q 013810 295 SK-SGVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP 361 (436)
Q Consensus 295 ~~-~gV~i~~~~-v~~i~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t 361 (436)
++ .||+++.+. +.+++++ .|.+.+ + +++++|.|++++|.+|+ ++++.. ++++++|+|.||+++| |
T Consensus 398 ~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~-T 475 (515)
T TIGR03140 398 KSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGR-T 475 (515)
T ss_pred hcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCC-C
Confidence 66 599999985 8888654 355543 2 46999999999999999 577665 7788889999999999 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++|+|||+|||+..+ .+++..|+.+|..||.+|..+.
T Consensus 476 s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 476 SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHHHHH
Confidence 999999999999852 3567789999999999998754
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=293.58 Aligned_cols=283 Identities=16% Similarity=0.185 Sum_probs=194.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--hcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--CVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..+||+|||||||||+||.+|++.|++|+|||++...+........ ..+.... . ...+.+.........++.++.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~-~-~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNT-T-GPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCC-C-HHHHHHHHHHHHHHcCCEEecc
Confidence 3589999999999999999999999999999986432111110000 0111000 0 0112222222334457888888
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc----ccccccChHHHHHHHHHHHHhc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE----NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~----~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
+|+.++.+.+.+.+.. .++ .+.||+||||||+.|+.|++||.+. .++..... + ...
T Consensus 81 ~V~~i~~~~~~~~V~~-~~g---------~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~-~-----~~~---- 140 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKT-ARG---------DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATC-D-----GEF---- 140 (555)
T ss_pred EEEEEEecCCEEEEEe-cCC---------EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeec-C-----hhh----
Confidence 9999987665444433 233 6889999999999999999999642 11111111 0 010
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|++++ .+|+++++.+.+. .... ...+.+
T Consensus 141 -------------~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~---~~~~~~ 189 (555)
T TIGR03143 141 -------------FTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKL---IAEKVK 189 (555)
T ss_pred -------------cCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHH---HHHHHH
Confidence 22359999999999999999998766 8999999865331 1222 223334
Q ss_pred HhcCCEEEecc-eEEEeCCe----EEE---cCCcE----Eecce----EEEecCCCCch-hcccCCCCCCCCCcEEeCCC
Q 013810 295 SKSGVRLVRGI-VKDVDSQK----LIL---NDGTE----VPYGL----LVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW 357 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~~----v~~---~~g~~----i~~D~----vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~ 357 (436)
...||+++.+. |.++.++. +.+ .+|++ +++|. |++++|++|+. +++. +++++++|+|.||++
T Consensus 190 ~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~ 268 (555)
T TIGR03143 190 NHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNED 268 (555)
T ss_pred hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCc
Confidence 45699999995 88887532 222 35653 23676 99999999994 5554 578888899999999
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+| |++|+|||+|||+... ++.+..|+.||+.||.+|..+.
T Consensus 269 ~~-Ts~p~IyAaGDv~~~~--------~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 269 ME-TNVPGVYAAGDLRPKE--------LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred cc-cCCCCEEEceeccCCC--------cchheeHHhhHHHHHHHHHHHH
Confidence 99 8999999999997531 4567789999999999997543
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=300.36 Aligned_cols=333 Identities=16% Similarity=0.146 Sum_probs=217.1
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.++|..+|+..|.+.....+ .....+.++..+...... ..... .+......++|+|||||||||+||.+
T Consensus 480 nPlp~icGrVC~h~Ce~~C~R~~~d~p-V~I~~Lkr~a~d~~~~~~-~~~~~--~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 480 NPLPAITGTICDHQCQYKCTRLDYDES-VNIREMKKVAAEKGYDEY-KTRWH--KPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred CChhhHhhCcCCcchHHHhcCCCCCCC-CcccHHHHHHHhhHHHhc-CccCC--CCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 578889999999999999988765543 344555555554321110 00110 11112345899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+++..+..... +.+........+.... ......++.++.+.. . .+.+. +..
T Consensus 556 LAr~G~~VTV~Ek~~~lGG~l~~-----~IP~~rlp~e~l~~~i-e~l~~~GVe~~~g~~----~---d~~ve---~l~- 618 (1012)
T TIGR03315 556 LARAGHPVTVFEKKEKPGGVVKN-----IIPEFRISAESIQKDI-ELVKFHGVEFKYGCS----P---DLTVA---ELK- 618 (1012)
T ss_pred HHHCCCeEEEEecccccCceeee-----cccccCCCHHHHHHHH-HHHHhcCcEEEEecc----c---ceEhh---hhh-
Confidence 99999999999998764332110 0111111111111111 122345777766521 1 11111 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G 239 (436)
...||+||||||+. +..+.++|....++. ..+....+... +. ....+++|+|||||
T Consensus 619 -------~~gYDaVIIATGA~~~~~l~I~G~~~~v~~--avefL~~~~~~----------~~----~~~~GK~VVVIGGG 675 (1012)
T TIGR03315 619 -------NQGYKYVILAIGAWKHGPLRLEGGGERVLK--SLEFLRAFKEG----------PT----INPLGKHVVVVGGG 675 (1012)
T ss_pred -------cccccEEEECCCCCCCCCCCcCCCCcceee--HHHHHHHhhcc----------cc----ccccCCeEEEECCC
Confidence 45699999999997 455678875433332 11111111110 00 00234699999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEE
Q 013810 240 PTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLI 315 (436)
Q Consensus 240 ~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~ 315 (436)
++|+|+|..+.+. + ..+|+++++.. .++...+++ .+.+ +.||+++... +.+++++.++
T Consensus 676 nvAmD~Ar~a~Rl~G-------------a~kVtLVyRr~~~~Mpa~~eEl----~~al-eeGVe~~~~~~p~~I~~g~l~ 737 (1012)
T TIGR03315 676 NTAMDAARAALRVPG-------------VEKVTVVYRRTKRYMPASREEL----EEAL-EDGVDFKELLSPESFEDGTLT 737 (1012)
T ss_pred HHHHHHHHHHHHhCC-------------CceEEEEEccCccccccCHHHH----HHHH-HcCCEEEeCCceEEEECCeEE
Confidence 9999999988764 2 15899999853 455544443 2333 4699998873 5666543322
Q ss_pred E-----------------cCCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC-CCCCCCCCEEEeccccc
Q 013810 316 L-----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 316 ~-----------------~~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-~~~t~~~~Vya~GD~~~ 374 (436)
+ .+|+ ++++|.||+|+|+.|+ .+++.++++++++|++.||++ ++ |+.|+|||+|||+.
T Consensus 738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~-Ts~pgVFAaGD~a~ 816 (1012)
T TIGR03315 738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGE-TNITNVFVIGDANR 816 (1012)
T ss_pred EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCc-cCCCCEEEEeCcCC
Confidence 1 1233 6899999999999998 678888999999999999987 77 89999999999997
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
. +.++..|+.||+.||.+|...
T Consensus 817 G---------P~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 817 G---------PATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred C---------ccHHHHHHHHHHHHHHHHhcc
Confidence 6 788999999999999999853
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=304.66 Aligned_cols=342 Identities=18% Similarity=0.174 Sum_probs=221.1
Q ss_pred Ccccccccccccc--ccccCCCCCccC-CCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIM-PSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRL 77 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~a 77 (436)
+||...|.|+|.. .|+..|-..... .+. ....+.++..+... .......+.......++|+|||||||||+|
T Consensus 372 ~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v-~i~~l~r~~~d~~~----~~~~~~~~~~~~~~~~~V~IIGaGpAGl~a 446 (752)
T PRK12778 372 SALPAVCGRVCPQEKQCESKCIHGKMGEEAV-AIGYLERFVADYER----ESGNISVPEVAEKNGKKVAVIGSGPAGLSF 446 (752)
T ss_pred CCchhHhcCcCCCcCchHHhcccCCCCCCCc-CHHHHHHHHHHHHH----HhCCCCCCCCCCCCCCEEEEECcCHHHHHH
Confidence 4788999999996 799999776544 222 23333343332211 000111121222356899999999999999
Q ss_pred HHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecC
Q 013810 78 MKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD 157 (436)
Q Consensus 78 A~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~ 157 (436)
|.+|++.|++|+|||+.+.+..... .|.+.+. +...+...........++.++.+.+.+ +.+.+. +
T Consensus 447 A~~l~~~G~~V~v~e~~~~~GG~l~-----~gip~~r-lp~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~~---~ 512 (752)
T PRK12778 447 AGDLAKRGYDVTVFEALHEIGGVLK-----YGIPEFR-LPKKIVDVEIENLKKLGVKFETDVIVG-----KTITIE---E 512 (752)
T ss_pred HHHHHHCCCeEEEEecCCCCCCeee-----ecCCCCC-CCHHHHHHHHHHHHHCCCEEECCCEEC-----CcCCHH---H
Confidence 9999999999999998765332110 1111111 111111111122344678887764431 222221 2
Q ss_pred CcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEE
Q 013810 158 ELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (436)
Q Consensus 158 g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvV 235 (436)
.. ...||+||||||+ .|+.+++||.+ .++++..++.....+..... .....+ ...+++|+|
T Consensus 513 l~--------~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~---~~~~~~------~~~gk~VvV 575 (752)
T PRK12778 513 LE--------EEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAAS---PDSDTP------IKFGKKVAV 575 (752)
T ss_pred Hh--------hcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhccccc---ccccCc------ccCCCcEEE
Confidence 21 4679999999999 59999999976 45555544433222111000 000011 134569999
Q ss_pred ECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC
Q 013810 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (436)
Q Consensus 236 iG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~ 311 (436)
||+|++|+|+|..+.+++ . +|+++++.. .++....++ +.+++.||+++.+. +.++..
T Consensus 576 IGgG~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~ 636 (752)
T PRK12778 576 VGGGNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLA 636 (752)
T ss_pred ECCcHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEE
Confidence 999999999999998876 5 499999853 233322221 34677899999874 655532
Q ss_pred ---Ce---EEEc---------CC-----------cEEecceEEEecCCCCch-hcccC-CCCCCCCCcEEeCCCCCCCCC
Q 013810 312 ---QK---LILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSL-DLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 312 ---~~---v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~-~l~~~~~G~i~vd~~~~~t~~ 363 (436)
+. |++. +| .++++|.||+|+|+.|+. ++... +++++++|+|.||++++ |+.
T Consensus 637 ~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts~ 715 (752)
T PRK12778 637 DEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQ-SSI 715 (752)
T ss_pred CCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCC-CCC
Confidence 11 2321 12 259999999999999994 44443 78888899999999998 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 716 ~gVfA~GD~~~g---------~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 716 PGIYAGGDIVRG---------GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCEEEeCCccCC---------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999986 67899999999999999987654
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=287.88 Aligned_cols=347 Identities=18% Similarity=0.184 Sum_probs=222.3
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||..-|.|+|..+|+..|.+..... ......+.++..+........ .+. .+.....++|+||||||||++||..
T Consensus 87 ~p~~~~~g~vC~~~Ce~~C~~~~~~~-~v~i~~l~r~~~~~~~~~~~~---~~~-~~~~~~~~~VvIIGaGpAGl~aA~~ 161 (471)
T PRK12810 87 NNFPEFTGRVCPAPCEGACTLNINFG-PVTIKNIERYIIDKAFEEGWV---KPD-PPVKRTGKKVAVVGSGPAGLAAADQ 161 (471)
T ss_pred CChhHHhcCcCCchhHHhccCCCCCC-CccHHHHHHHHHHHHHHcCCC---CCC-CCcCCCCCEEEEECcCHHHHHHHHH
Confidence 57888999999999999998886443 334455555554322111000 111 1122345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+....... .+.+.+.. ...+...........++.++.+.....+... +..
T Consensus 162 l~~~G~~V~vie~~~~~GG~l~-----~gip~~~~-~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~---------~~~- 225 (471)
T PRK12810 162 LARAGHKVTVFERADRIGGLLR-----YGIPDFKL-EKEVIDRRIELMEAEGIEFRTNVEVGKDITA---------EEL- 225 (471)
T ss_pred HHhCCCcEEEEecCCCCCceee-----ecCCcccC-CHHHHHHHHHHHHhCCcEEEeCCEECCcCCH---------HHH-
Confidence 9999999999999876432210 11111111 1111111112234467888776544322110 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+. ++.+++||.+ .++++..++... ....+. .....+. ....+++|+|||+
T Consensus 226 -------~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~--~~~~~~---~~~~~~~----~~~~gk~VvVIGg 289 (471)
T PRK12810 226 -------LAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQ--NTRRVL---GDETEPF----ISAKGKHVVVIGG 289 (471)
T ss_pred -------HhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHH--HHhhhc---ccccccc----ccCCCCEEEEECC
Confidence 35799999999997 7788999975 344432221111 000000 0000000 0023469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCccc------HH-HHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD------DR-LRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~------~~-~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
|++|+|+|..+.+.+ ..+|++++......... +. ......+.+.+.||+++.+. ++++.
T Consensus 290 G~~g~e~A~~~~~~g-------------a~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 290 GDTGMDCVGTAIRQG-------------AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred cHHHHHHHHHHHHcC-------------CCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 999999999887765 15788766543211110 00 01113456777899999984 77775
Q ss_pred C--CeE---E-----EcCC---------cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC-CCCCCCCCCCEEE
Q 013810 311 S--QKL---I-----LNDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFA 368 (436)
Q Consensus 311 ~--~~v---~-----~~~g---------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~~~~t~~~~Vya 368 (436)
. +.| + +.+| +++++|.||+|+|+.|+ .+++.++++++++|++.+| ++++ |+.|+|||
T Consensus 357 ~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~-Ts~~gVfa 435 (471)
T PRK12810 357 GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQ-TSNPKVFA 435 (471)
T ss_pred ccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCccc-CCCCCEEE
Confidence 3 222 2 2222 46999999999999997 3788889999989999998 7888 99999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+|||+.. +.++..|+.||+.||.+|..+..
T Consensus 436 ~GD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 436 AGDMRRG---------QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccccCCC---------chhHHHHHHHHHHHHHHHHHHHh
Confidence 9999985 56789999999999999987654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=302.57 Aligned_cols=345 Identities=16% Similarity=0.151 Sum_probs=220.1
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCcccc--ccccCC-CCCCCCCCCcEEEECCchHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL--TQYSGL-GPTKANEKPRVVVLGSGWAGC 75 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~VvIIGgG~AGl 75 (436)
+||+..|.|+|.. .|+..|... .. ......+.++..+........ ..+... .+......++|+|||||||||
T Consensus 243 np~p~~~GrVCp~~~~CE~~C~~~--~~-pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGL 319 (944)
T PRK12779 243 NPLPNVTGRVCPQELQCQGVCTHT--KR-PIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGL 319 (944)
T ss_pred CChhHHhcCcCCCccCHHHhccCC--Cc-CcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHH
Confidence 4789999999998 699999765 22 222333333332210000000 011110 000123468999999999999
Q ss_pred HHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEe
Q 013810 76 RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV 155 (436)
Q Consensus 76 ~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~ 155 (436)
+||.+|++.|++|+|||+.+..+..- ..|.+.++. ...+.+......+..++.|+.+.+.+. .+.+.
T Consensus 320 saA~~Lar~G~~VtVfE~~~~~GG~l-----~yGIP~~rl-p~~vi~~~i~~l~~~Gv~f~~n~~vG~-----dit~~-- 386 (944)
T PRK12779 320 INAYLLAVEGFPVTVFEAFHDLGGVL-----RYGIPEFRL-PNQLIDDVVEKIKLLGGRFVKNFVVGK-----TATLE-- 386 (944)
T ss_pred HHHHHHHHCCCeEEEEeeCCCCCceE-----EccCCCCcC-hHHHHHHHHHHHHhhcCeEEEeEEecc-----EEeHH--
Confidence 99999999999999999987643321 122232221 122222222233456888887755432 23332
Q ss_pred cCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcE
Q 013810 156 TDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHC 233 (436)
Q Consensus 156 ~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v 233 (436)
+.. ...||+||||||+ .|+.+++||.+ .++++..++.............. ....|. ..+++|
T Consensus 387 -~l~--------~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~-~~~~~~------~~Gk~V 450 (944)
T PRK12779 387 -DLK--------AAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDY-ETPLPE------VKGKEV 450 (944)
T ss_pred -Hhc--------cccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccc-cccccc------cCCCEE
Confidence 222 4579999999999 58999999976 55555544443322211000000 000111 245699
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 234 vViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
+|||||++|+|+|..+.+++ .+|+++++.. .++....+ +.+ ..+.||+++... ++++.
T Consensus 451 vVIGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e----~~~-a~eeGV~~~~~~~p~~i~ 511 (944)
T PRK12779 451 FVIGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEE----LHH-ALEEGINLAVLRAPREFI 511 (944)
T ss_pred EEECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHH----HHH-HHHCCCEEEeCcceEEEE
Confidence 99999999999999999877 7899999853 33332222 222 345699998873 66664
Q ss_pred CC----eE---EE---------c--------CC--cEEecceEEEecCCCCchhc--ccCCCCCCCCCcEEeCCC-CCCC
Q 013810 311 SQ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLV--KSLDLPKSPGGRIGIDEW-LRVP 361 (436)
Q Consensus 311 ~~----~v---~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~--~~~~l~~~~~G~i~vd~~-~~~t 361 (436)
.+ .| ++ . +| .+++||.||+|+|+.|++.+ ...+++.+++|.|.||+. ++ |
T Consensus 512 ~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~-T 590 (944)
T PRK12779 512 GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQR-T 590 (944)
T ss_pred ecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCc-c
Confidence 21 12 11 1 22 35999999999999999543 235788888999999975 67 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+.
T Consensus 591 s~pgVFAaGD~~~G---------~~~vv~Ai~eGr~AA~~I~~~L 626 (944)
T PRK12779 591 SIKGVYSGGDAARG---------GSTAIRAAGDGQAAAKEIVGEI 626 (944)
T ss_pred CCCCEEEEEcCCCC---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6789999999999999998654
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=295.29 Aligned_cols=334 Identities=19% Similarity=0.199 Sum_probs=216.0
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...+.|+|..+|+..|.+.....+. ....+.++..+.... ......+.......++|+|||||||||+||..
T Consensus 137 ~p~p~~~grvC~~~Ce~~C~r~~~~~~v-~i~~l~r~~~~~~~~----~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~ 211 (652)
T PRK12814 137 IPLPGILGRICPAPCEEACRRHGVDEPV-SICALKRYAADRDME----SAERYIPERAPKSGKKVAIIGAGPAGLTAAYY 211 (652)
T ss_pred CCccceeeCCcCchhhHHHcCCCCCCCc-chhHHHHHHHHHHHh----cCcccCCCCCCCCCCEEEEECCCHHHHHHHHH
Confidence 5788999999999999998766544322 233333333321110 00111111122345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+++..+.... .+.+.+. ....+.+.........++.++.+.+.+++ +.+ .+.
T Consensus 212 La~~G~~Vtv~e~~~~~GG~l~-----~gip~~~-~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d-----v~~---~~~-- 275 (652)
T PRK12814 212 LLRKGHDVTIFDANEQAGGMMR-----YGIPRFR-LPESVIDADIAPLRAMGAEFRFNTVFGRD-----ITL---EEL-- 275 (652)
T ss_pred HHHCCCcEEEEecCCCCCceee-----ecCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCcccCc-----cCH---HHH--
Confidence 9999999999999876532211 1111111 11111111111223457777666543322 111 011
Q ss_pred cCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||||||+.+ ..+++||.+ .+++...++. .... ... ....+++|+|||+
T Consensus 276 -------~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l------~~~~----~~~-------~~~~gk~VvVIGg 331 (652)
T PRK12814 276 -------QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL------RNVA----LGT-------ALHPGKKVVVIGG 331 (652)
T ss_pred -------HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHH------HHhh----cCC-------cccCCCeEEEECC
Confidence 335999999999975 567899865 3333221111 1110 000 0133469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK 313 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~ 313 (436)
|++|+|+|..+.+++ ..+|+++++.. .++..+.++ .+. .+.||+++.+. +.++.. +.
T Consensus 332 G~~a~e~A~~l~~~G-------------a~~Vtlv~r~~~~~mpa~~~ei----~~a-~~eGV~i~~~~~~~~i~~~~~~ 393 (652)
T PRK12814 332 GNTAIDAARTALRLG-------------AESVTILYRRTREEMPANRAEI----EEA-LAEGVSLRELAAPVSIERSEGG 393 (652)
T ss_pred CHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHH----HHH-HHcCCcEEeccCcEEEEecCCe
Confidence 999999999988765 25799999853 455544333 223 35699999874 666642 22
Q ss_pred E-----EEc---------------CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC-CCCCCCCCEEEe
Q 013810 314 L-----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAV 369 (436)
Q Consensus 314 v-----~~~---------------~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-~~~t~~~~Vya~ 369 (436)
+ .+. +|+ ++++|.||+++|+.|+ .++...+++++.+|+|.||+. ++ |+.|+|||+
T Consensus 394 ~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~-Ts~pgVfA~ 472 (652)
T PRK12814 394 LELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQ-TSVAGVFAG 472 (652)
T ss_pred EEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCc-CCCCCEEEc
Confidence 1 111 222 5999999999999999 578888898888999999975 66 999999999
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|||+.. +.++..|+.||+.||.+|..+..
T Consensus 473 GDv~~g---------~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 473 GDCVTG---------ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CCcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 999976 67899999999999999986653
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=255.12 Aligned_cols=296 Identities=21% Similarity=0.333 Sum_probs=213.2
Q ss_pred CCCCCcEEEECCchHHHHHHHhcccCCCeEEEEc---CCCcceecchhhhhhcC--------------------------
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVS---PRNHMVFTPLLASTCVG-------------------------- 109 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie---~~~~~~~~~~~~~~~~~-------------------------- 109 (436)
.+..+|++|||||-+||+||.+++..|.+|.++| +.+. +....+++.|.+
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 3467999999999999999999999999999988 2221 111111222111
Q ss_pred --------cccccccccchhhcchhhhcCCCcEEEEeEeEeEeC-----CCCEEEEEEecCCcccCCCCceeeeccEEEE
Q 013810 110 --------TLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDT-----DNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (436)
Q Consensus 110 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~-----~~~~v~~~~~~~g~~~~~~~~~~~~~d~lVi 176 (436)
..++..+.+.+++....+..-..+.++..+|.-++. +.+.+.... .+|. +..+.++.+||
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~-~~gk------~~~~ta~~fvI 167 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATN-KKGK------ERFLTAENFVI 167 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEec-CCCc------eEEeecceEEE
Confidence 001111111122221111112223334445555543 222333222 2332 33789999999
Q ss_pred eCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 177 AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
|||.+|++|+|||..+..++++++ |.+...|+ +.+|||+|++++|+|.+|+.++
T Consensus 168 atG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg--- 221 (503)
T KOG4716|consen 168 ATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG--- 221 (503)
T ss_pred EecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC---
Confidence 999999999999988888888775 34666777 8999999999999999999988
Q ss_pred HHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc----eEEEeCCeEEE--c-----CCcEEecc
Q 013810 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI----VKDVDSQKLIL--N-----DGTEVPYG 325 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~----v~~i~~~~v~~--~-----~g~~i~~D 325 (436)
.+|++..|+-+++.||.++.+.+.+.|+++||+|.... |..+++..+.+ . ++-+-++|
T Consensus 222 -----------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~yd 290 (503)
T KOG4716|consen 222 -----------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYD 290 (503)
T ss_pred -----------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhh
Confidence 99999999999999999999999999999999998873 56666654322 1 12246799
Q ss_pred eEEEecCCCCc--h-hcccCCCCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhh
Q 013810 326 LLVWSTGVGPS--T-LVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKP 401 (436)
Q Consensus 326 ~vi~a~G~~p~--~-~~~~~~l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 401 (436)
.|+||+|+.+. + -+...|+..++ .|.|.||+.-+ |++|+|||+||+... .|.+...|++.|+..|+.
T Consensus 291 TVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~-t~vp~vyAvGDIl~~--------kpELTPvAIqsGrlLa~R 361 (503)
T KOG4716|consen 291 TVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEA-TNVPYVYAVGDILED--------KPELTPVAIQSGRLLARR 361 (503)
T ss_pred hhhhhhccccchhhcCCCccceeecccCCccccChHHh-cCCCceEEecceecC--------CcccchhhhhhchHHHHH
Confidence 99999999997 2 25566776654 58899999888 999999999999986 278999999999999999
Q ss_pred hhhhcCC
Q 013810 402 SFLLARN 408 (436)
Q Consensus 402 i~~~~~~ 408 (436)
++.-...
T Consensus 362 lf~gs~q 368 (503)
T KOG4716|consen 362 LFAGSTQ 368 (503)
T ss_pred HhcCcce
Confidence 9865443
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=252.08 Aligned_cols=288 Identities=20% Similarity=0.243 Sum_probs=213.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc---------------ceecchhhhhhc-----Cccc----cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---------------MVFTPLLASTCV-----GTLE----FRSV 116 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~---------------~~~~~~~~~~~~-----~~~~----~~~~ 116 (436)
..+|.+|||||-.|+++|+..+..|.++.|+|..-. ++|...+..... |.+. -.+|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 468999999999999999999999999999995412 222211111110 0000 0011
Q ss_pred cc----------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 117 AE----------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 117 ~~----------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.. .+..+.+.......+.++.++..-+++.+-.|... ++.+ ..+++.+++||||.+|..|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~---d~~~------~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVN---DGTK------IVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEec---CCee------EEEecceEEEEeCCccCCCC
Confidence 11 11111111222345666666665555444344332 4431 15889999999999999999
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
|||. +..+.++.+. .+.+.|. |++|||+|++|+|+|..++.++
T Consensus 170 IpG~-E~gidSDgff-------------~Lee~Pk----------r~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGFF-------------DLEEQPK----------RVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhcccccccc-------------chhhcCc----------eEEEEccceEEEEhhhHHhhcC-------------
Confidence 9997 4445554433 3444554 9999999999999999999988
Q ss_pred ccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC-----CeEEEcCCcEEecceEEEecCCCCch--
Q 013810 267 YIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPST-- 337 (436)
Q Consensus 267 ~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-----~~v~~~~g~~i~~D~vi~a~G~~p~~-- 337 (436)
.++.|+-| +..|+.||+.++..+.+.++..||++|.++ ++++.. ..+....|....+|.++||+|+.|+.
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 99999999 568999999999999999999999999985 666543 23445566666699999999999993
Q ss_pred -hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
-++..|++++++|.|.||++.+ |++|+||++||+++- ..+...|+.+|+..++.++..
T Consensus 292 L~le~vGVk~~~~g~IivDeYq~-Tnvp~I~avGDv~gk---------~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 292 LNLENVGVKTDKNGAIIVDEYQN-TNVPSIWAVGDVTGK---------INLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred ccchhcceeeCCCCCEEEecccc-CCCCceEEeccccCc---------EecchHHHhhhhhHHHHhhcC
Confidence 3677889999999999999999 999999999999996 778999999999999999863
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=283.83 Aligned_cols=281 Identities=18% Similarity=0.201 Sum_probs=200.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecc----hhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
..+||+||||||||++||.+|++.|++|+||++. ++.+. .+... .+... .....+.+......+..++.++
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~--~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENF-ISVPE--TEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCccccc-CCCCC--CCHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999999864 11110 01100 00000 0111222222333445567776
Q ss_pred E-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHH
Q 013810 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 137 ~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~ 212 (436)
. .+|+.++.....+.+.. .++. ++.||+||+|||+.++.+++||.++. ..+.....+ ..
T Consensus 285 ~~~~V~~I~~~~~~~~V~~-~~g~--------~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~-----~~--- 347 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVEL-ANGA--------VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD-----GP--- 347 (517)
T ss_pred cCCEEEEEEecCCeEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccC-----ch---
Confidence 5 48889988655555432 3454 79999999999999999999986421 111111000 00
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~ 292 (436)
...+++|+|||+|++|+|+|..|+.++ .+|+++++.+.+.. ...+.+
T Consensus 348 --------------~~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l~~ 394 (517)
T PRK15317 348 --------------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVLQD 394 (517)
T ss_pred --------------hcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHHHH
Confidence 023458999999999999999999876 89999998654321 134455
Q ss_pred HHHh-cCCEEEecc-eEEEeCC-----eEEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCC
Q 013810 293 QLSK-SGVRLVRGI-VKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (436)
Q Consensus 293 ~l~~-~gV~i~~~~-v~~i~~~-----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~ 359 (436)
.+.+ .||+++.+. +.++.++ .+.+. +| +++++|.+++++|.+|+ .+++.. ++++++|+|.||+++|
T Consensus 395 ~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~ 473 (517)
T PRK15317 395 KLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGA 473 (517)
T ss_pred HHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCC
Confidence 5665 599999995 8888654 24554 33 35999999999999998 577665 7788889999999999
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|++|+|||+|||+..+ .+.+..|+.+|..||.++..+.
T Consensus 474 -Ts~p~IyAaGDv~~~~--------~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 474 -TSVPGVFAAGDCTTVP--------YKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred -CCCCCEEECccccCCC--------CCEEEEhhhhHHHHHHHHHHHH
Confidence 9999999999999863 4778999999999999987654
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=271.31 Aligned_cols=292 Identities=24% Similarity=0.392 Sum_probs=241.9
Q ss_pred CCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
+.++||||-|+||..+..++.+ .-+++|++-.+++..|. ..+..+..+....++. .-....++++.++.++.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi----~l~~~dwy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI----SLNRNDWYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH----hccchhhHHHcCcEEEc
Confidence 4789999999999999999877 45789999999988775 4555565554444333 33334467788999888
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+ .|+.||+.++.|+.+ .|. .+.||.||+||||.|+.+++||.+ ..++.++++++........
T Consensus 79 ~~~v~~idr~~k~V~t~---~g~--------~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTTD---AGR--------TVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEcc---CCc--------EeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 7 999999999998765 666 899999999999999999999987 7889999999988876642
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--CcccHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQ 293 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~~~~~~~~~~~~~~ 293 (436)
+..++.+|||+|..|+|+|..|...+ .++++++-.+.+ ..+++...+.+++.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 33447899999999999999999877 999999886533 56888888999999
Q ss_pred HHhcCCEEEecc-eEEEe----CCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 294 LSKSGVRLVRGI-VKDVD----SQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~----~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
+++.|+++++++ ..++. ..++.++||+.+++|+|++|+|++|+ ++....|+++++ .|.||+++| |++|+||
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mq-TsdpdIY 273 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQ-TSDPDIY 273 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeeccccc-ccCCCee
Confidence 999999999985 33332 36789999999999999999999999 799999999987 499999999 9999999
Q ss_pred EeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 368 AVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 368 a~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|+|+.... + ...+...+..||+.+|.++.....
T Consensus 274 AvGEcae~~g---~--~yGLVaP~yeq~~v~a~hl~~~~~ 308 (793)
T COG1251 274 AVGECAEHRG---K--VYGLVAPLYEQAKVLADHLCGGEA 308 (793)
T ss_pred ehhhHHHhcC---c--cceehhHHHHHHHHHHHHhccCcc
Confidence 9999998522 1 267788899999999999986544
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=298.06 Aligned_cols=343 Identities=15% Similarity=0.099 Sum_probs=222.3
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||+..|.|+|.. .|+..|.+.....+. ....+.++..+.... ..... +....+.++|+|||||||||+||
T Consensus 374 np~p~~~grvCp~~~~Ce~~C~~~~~~~pv-~I~~ler~~~d~~~~----~~~~~--~~~~~~~~kVaIIG~GPAGLsaA 446 (1006)
T PRK12775 374 SIFPSICGRVCPQETQCEAQCIIAKKHESV-GIGRLERFVGDNARA----KPVKP--PRFSKKLGKVAICGSGPAGLAAA 446 (1006)
T ss_pred CChHHHhcCcCCCCCCHHHhCcCCCCCCCe-eecHHHHHHHHHHHH----cCCCC--CCCCCCCCEEEEECCCHHHHHHH
Confidence 5789999999998 899999888654433 444455554432210 01111 11122457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+... ..|.+.+......+... .......++.++.+.+.+.+ +.+....
T Consensus 447 ~~La~~G~~VtV~E~~~~~GG~l-----~~gip~~rl~~e~~~~~-~~~l~~~Gv~~~~~~~vg~~-----~~~~~l~-- 513 (1006)
T PRK12775 447 ADLVKYGVDVTVYEALHVVGGVL-----QYGIPSFRLPRDIIDRE-VQRLVDIGVKIETNKVIGKT-----FTVPQLM-- 513 (1006)
T ss_pred HHHHHcCCcEEEEecCCCCccee-----eccCCccCCCHHHHHHH-HHHHHHCCCEEEeCCccCCc-----cCHHHHh--
Confidence 99999999999999987643211 11222221111112222 22234468888877554322 2211100
Q ss_pred cccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+||||||+ .|+.++|||.+ .++++..++.....+.+.. .......+ ...+++|+||
T Consensus 514 ~--------~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~--~~~~~~~~------~~~Gk~VvVI 577 (1006)
T PRK12775 514 N--------DKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGD--KFPFLDTP------ISLGKSVVVI 577 (1006)
T ss_pred h--------ccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCcc--ccccccCC------ccCCCEEEEE
Confidence 0 2469999999999 48999999975 5555554444333221000 00000001 0235699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|||++|+|+|..+.++|. ..|+++.+.. .++....+ .+.+++.||+++.+. +.++..
T Consensus 578 GgG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 578 GAGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred CCcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCC
Confidence 999999999999887761 4688888742 22322111 234677899999884 666631
Q ss_pred -Ce---EEEc-----------------CC--cEEecceEEEecCCCCch-hccc-CCCCCCCCCcEEeCC-----CCCCC
Q 013810 312 -QK---LILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-----WLRVP 361 (436)
Q Consensus 312 -~~---v~~~-----------------~g--~~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~-----~~~~t 361 (436)
+. |++. +| .++++|.||+|+|+.|+. ++.. .+++++++|.|.+|+ +++ |
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~-T 718 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQS-T 718 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcC-C
Confidence 22 2221 12 259999999999999994 4443 467888889999997 577 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 719 s~pgVFAaGDv~~G---------~~~vv~Ai~~Gr~AA~~I~~~L~ 755 (1006)
T PRK12775 719 NLPGVFAGGDIVTG---------GATVILAMGAGRRAARSIATYLR 755 (1006)
T ss_pred CCCCEEEecCcCCC---------ccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 77899999999999999986643
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=265.27 Aligned_cols=298 Identities=19% Similarity=0.155 Sum_probs=192.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
..++|+|||||+||+++|..|++.|++|++||+.+.+...... ......... ..+......+.+ .++.++.+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~----~~~~~~~~~l~~-~~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPI----ERVREGVKELEE-AGVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCH----HHHHHHHHHHHh-CCeEEecCcE
Confidence 3478999999999999999999999999999998765322110 000000011 111222222333 3777776633
Q ss_pred E-eEeC----CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHh
Q 013810 141 A-GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 141 ~-~id~----~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
. .++. ....+.... ...+ ...+.||+||||||+ .++.|++||.+ .++++.. .....+......-
T Consensus 91 v~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~ 161 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERI-VSLE------ELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGY 161 (352)
T ss_pred Eeecccccccccccccccc-CCHH------HHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHH--HHHHHhhhccccc
Confidence 3 3221 111111000 0110 014789999999999 57888999875 3333321 1111111100000
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCCCcccHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILSSFDDRLRHYATT 292 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l~~~~~~~~~~~~~ 292 (436)
......|. ..+++++|||+|++|+|+|..|...+ . +|+++++...... .......+
T Consensus 162 ~~~~~~~~------~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~ 218 (352)
T PRK12770 162 LPWEKVPP------VEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIE 218 (352)
T ss_pred cccccccc------cCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHH
Confidence 00111121 22458999999999999999997655 5 4999988543211 11133455
Q ss_pred HHHhcCCEEEecc-eEEEeCC-e---EEE--------------------cCCcEEecceEEEecCCCCch-hccc-CCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ-K---LIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLP 345 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~-~---v~~--------------------~~g~~i~~D~vi~a~G~~p~~-~~~~-~~l~ 345 (436)
.|+++||+++++. +.+++++ + |++ .+++++++|.||+++|++|++ +..+ ++++
T Consensus 219 ~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~ 298 (352)
T PRK12770 219 RLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIE 298 (352)
T ss_pred HHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCce
Confidence 6889999999984 7777542 2 222 123479999999999999994 5555 7888
Q ss_pred CCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 346 ~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++++|+|.||++++ |+.|+|||+|||+.. +..+..|+.||+.||.+|....
T Consensus 299 ~~~~g~i~vd~~~~-t~~~~vyaiGD~~~~---------~~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 299 LNRKGEIVVDEKHM-TSREGVFAAGDVVTG---------PSKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred ecCCCcEeeCCCcc-cCCCCEEEEcccccC---------cchHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999 899999999999986 6788999999999999997654
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=269.35 Aligned_cols=344 Identities=17% Similarity=0.142 Sum_probs=218.7
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...|.|+|. ..|+..|.+.....+ .....+.++..+........ ..++. ...+.++|+|||||||||+||
T Consensus 83 np~~~~~grvC~~~~~Ce~~C~~~~~~~~-v~i~~l~r~~~~~~~~~~~~---~~~~~-~~~~~~~V~IIG~GpaGl~aA 157 (467)
T TIGR01318 83 NTLPEICGRVCPQDRLCEGACTLNDEFGA-VTIGNLERYITDTALAMGWR---PDLSH-VVPTGKRVAVIGAGPAGLACA 157 (467)
T ss_pred CCchHhhcccCCCCCChHHhCcCCCCCCC-ccHHHHHHHHHHHHHHhCCC---CCCCC-cCCCCCeEEEECCCHHHHHHH
Confidence 478899999998 599999988755433 33444555544322111000 11111 122457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|+|+.+.+..... .+.+.. .+...+...........++.++.+..... .+.+ ++
T Consensus 158 ~~l~~~G~~V~i~e~~~~~gG~l~-----~gip~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~----~~ 222 (467)
T TIGR01318 158 DILARAGVQVVVFDRHPEIGGLLT-----FGIPSF-KLDKAVLSRRREIFTAMGIEFHLNCEVGR-----DISL----DD 222 (467)
T ss_pred HHHHHcCCeEEEEecCCCCCceee-----ecCccc-cCCHHHHHHHHHHHHHCCCEEECCCEeCC-----ccCH----HH
Confidence 999999999999999876432211 111111 11111112222234456777765532211 1111 11
Q ss_pred cccCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+||+|||+.+ ..+++||.+ +++++..++.. .....+. .+...+.+.. ....+++++||
T Consensus 223 ~--------~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~--~~~~~~~---~~~~~~~~~~-~~~~gk~VvVI 288 (467)
T TIGR01318 223 L--------LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLI--ANTRQLM---GLPESPEEPL-IDVEGKRVVVL 288 (467)
T ss_pred H--------HhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHH--HHHHHhc---CCCccccccc-cccCCCEEEEE
Confidence 1 346999999999986 457899976 34443322111 0000010 0000000000 00234689999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++|+++|..+.+++ ..+|+++++.+ .++..+.++ +.+.+.||+++.+. +.++..
T Consensus 289 GgG~~a~d~A~~a~~~G-------------a~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~ 350 (467)
T TIGR01318 289 GGGDTAMDCVRTAIRLG-------------AASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDE 350 (467)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECC
Confidence 99999999999988765 14799999853 344443322 34567899999984 777742
Q ss_pred -Ce---EEEc---------C---------C--cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC----CCCCCC
Q 013810 312 -QK---LILN---------D---------G--TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID----EWLRVP 361 (436)
Q Consensus 312 -~~---v~~~---------~---------g--~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd----~~~~~t 361 (436)
+. |++. + | .++++|.||+++|+.|+ .++...+++++++|+|.|| .+++ |
T Consensus 351 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~-T 429 (467)
T TIGR01318 351 DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQ-T 429 (467)
T ss_pred CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCcc-C
Confidence 22 2221 1 2 36999999999999997 3677778888889999999 5788 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+|||+.. +.++..|+.+|+.||.+|..+.
T Consensus 430 ~~~gVfa~GD~~~~---------~~~~~~Ai~~G~~aA~~i~~~L 465 (467)
T TIGR01318 430 TNPKIFAGGDAVRG---------ADLVVTAVAEGRQAAQGILDWL 465 (467)
T ss_pred CCCCEEEECCcCCC---------ccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6688899999999999997653
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-32 Score=278.67 Aligned_cols=344 Identities=15% Similarity=0.115 Sum_probs=216.3
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...+.|+|. ..|+..|.+.....+. ....+.++..+..-... +.+.........++|+|||||||||+||
T Consensus 269 np~p~~~grvCp~~~~Ce~~C~~~~~~~~v-~I~~l~r~~~d~~~~~~----~~~~~~~~~~~~~~VaIIGaGpAGLsaA 343 (654)
T PRK12769 269 NSLPEITGRVCPQDRLCEGACTLRDEYGAV-TIGNIERYISDQALAKG----WRPDLSQVTKSDKRVAIIGAGPAGLACA 343 (654)
T ss_pred CCchhHhcccCCCCCChHHhccCCCCCCCe-ecCHHHHHHHHHHHHhC----CCCCCcccccCCCEEEEECCCHHHHHHH
Confidence 578999999998 4799999877654433 33334444433211100 1110011112457999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
.+|++.|++|+|||+.+..+.... .+.+.+ .+...+...........++.++.+.....+ +.+. +.
T Consensus 344 ~~L~~~G~~V~V~E~~~~~GG~l~-----~gip~~-~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-----i~~~---~~ 409 (654)
T PRK12769 344 DVLARNGVAVTVYDRHPEIGGLLT-----FGIPAF-KLDKSLLARRREIFSAMGIEFELNCEVGKD-----ISLE---SL 409 (654)
T ss_pred HHHHHCCCeEEEEecCCCCCceee-----ecCCCc-cCCHHHHHHHHHHHHHCCeEEECCCEeCCc-----CCHH---HH
Confidence 999999999999999876432211 111111 111112111122234457777655322211 1111 10
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
...||+|++|||+. ++.+++||.+ .+++...++. ....+.+.........+. ....+++|+||
T Consensus 410 ---------~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l--~~~~~~~~~~~~~~~~~~----~~~~gk~VvVI 474 (654)
T PRK12769 410 ---------LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFL--IANTKQVMGLEELPEEPF----INTAGLNVVVL 474 (654)
T ss_pred ---------HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHH--HHHHhhhccCcccccccc----ccCCCCeEEEE
Confidence 34699999999996 4567888875 3443321111 000001000000000000 00234689999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--C
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--S 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~ 311 (436)
|+|++|+|+|..+.+.+ ..+|+++++.. .++..+.+ .+.+++.||+++.+. ++++. +
T Consensus 475 GgG~~a~d~A~~a~r~g-------------a~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~ 536 (654)
T PRK12769 475 GGGDTAMDCVRTALRHG-------------ASNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNE 536 (654)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECC
Confidence 99999999999887765 15799998743 24443322 345778899999884 66664 1
Q ss_pred -Ce---EEE---------cCC---------c--EEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeCC----CCCCC
Q 013810 312 -QK---LIL---------NDG---------T--EVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRVP 361 (436)
Q Consensus 312 -~~---v~~---------~~g---------~--~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~~~~t 361 (436)
+. |++ .+| + ++++|.||+|+|+.|+ .+++.++++++++|.|.||+ +++ |
T Consensus 537 ~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~-T 615 (654)
T PRK12769 537 QGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQ-T 615 (654)
T ss_pred CCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcc-c
Confidence 22 232 112 2 5999999999999998 36788899999999999986 478 9
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+||++.. +.++..|+.+|+.||.+|..+.
T Consensus 616 s~~gVfAaGD~~~g---------~~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 616 SNPKIFAGGDAVRG---------ADLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred CCCCEEEcCCcCCC---------CcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 6788999999999999998764
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=242.21 Aligned_cols=287 Identities=21% Similarity=0.248 Sum_probs=208.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------h------cCcccccccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------C------VGTLEFRSVAEP 119 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------~------~~~~~~~~~~~~ 119 (436)
..+||+|||+||+|..||+.+++.|++.++||++..++.+-+--+. + ....+......+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 3599999999999999999999999999999997655332110000 0 000111111111
Q ss_pred hh--------------hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 120 IA--------------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 120 ~~--------------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+. .-...+.+...+.++.+.-.-+++ +.|.+.. .+|. .+.+.++++|||||+.- +
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p--~~V~v~k-~dg~------~~ii~aKnIiiATGSeV--~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP--NKVSVKK-IDGE------DQIIKAKNIIIATGSEV--T 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCC--ceEEEec-cCCC------ceEEeeeeEEEEeCCcc--C
Confidence 11 111112233445555554444443 4455543 2443 23789999999999952 3
Q ss_pred CCCCCc--c-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhc
Q 013810 186 GIHGVK--E-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (436)
Q Consensus 186 ~i~g~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~ 262 (436)
++||+. + .+.++.. .+.+.++|. +++|||+|.+|+|++..+.++|
T Consensus 187 ~~PGI~IDekkIVSStg-------------ALsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG--------- 234 (506)
T KOG1335|consen 187 PFPGITIDEKKIVSSTG-------------ALSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG--------- 234 (506)
T ss_pred CCCCeEecCceEEecCC-------------ccchhhCcc----------eEEEEcCceeeeehhhHHHhcC---------
Confidence 455654 3 3333322 234556675 9999999999999999999988
Q ss_pred CCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C-e--EEEcC---C--cEEecceEEEe
Q 013810 263 HVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-K--LILND---G--TEVPYGLLVWS 330 (436)
Q Consensus 263 ~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-~--v~~~~---g--~~i~~D~vi~a 330 (436)
.+||+++. +.+.+.+|.++++..++.|.+.|++|++++ +..++. + . |++.+ + ++++||.++++
T Consensus 235 -----seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 235 -----SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred -----CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEE
Confidence 99999998 678888999999999999999999999995 777654 2 2 33332 2 46999999999
Q ss_pred cCCCCch---hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 331 TGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 331 ~G~~p~~---~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+|++|-+ -++..|++.|.+|++.||..++ |.+|+||+|||++.. |++++.|..||..+.+.|...
T Consensus 310 iGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~-t~vP~i~~IGDv~~g---------pMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 310 IGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQ-TKVPHIYAIGDVTLG---------PMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred ccCcccccCCChhhcccccccccceecccccc-ccCCceEEecccCCc---------chhhhhhhhhchhheeeeccc
Confidence 9999972 2677888899999999999999 999999999999998 899999999999999988753
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=265.73 Aligned_cols=349 Identities=19% Similarity=0.194 Sum_probs=210.1
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
++|+..+.++|..+|...|.+.....+. ....+.++..+..... .+...........++|+|||||+||++||.+
T Consensus 87 ~p~p~~~grvC~~~Ce~~C~~~~~~~~v-~I~~l~r~~~~~~~~~----~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~ 161 (485)
T TIGR01317 87 NNFPEFTGRVCPAPCEGACTLGISEDPV-GIKSIERIIIDKGFQE----GWVQPRPPSKRTGKKVAVVGSGPAGLAAADQ 161 (485)
T ss_pred CCchhHHhCcCChhhHHhccCCCCCCCc-chhHHHHHHHHHHHHc----CCCCCCCCcCCCCCEEEEECCcHHHHHHHHH
Confidence 4678889999999999999877544332 3333433332211100 0000000111234799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|||+.+....... .+.+.. .+...+...........++.++.+.....+... +..
T Consensus 162 L~~~g~~V~v~e~~~~~gG~l~-----~gip~~-~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~---------~~~- 225 (485)
T TIGR01317 162 LNRAGHTVTVFEREDRCGGLLM-----YGIPNM-KLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISA---------DEL- 225 (485)
T ss_pred HHHcCCeEEEEecCCCCCceee-----ccCCCc-cCCHHHHHHHHHHHHhCCCEEECCCEeCCccCH---------HHH-
Confidence 9999999999999876432110 011111 011111111112334467888766443322110 111
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+. |+.+++||.+ .++++..++.... +...........+. ....+++|+|||+
T Consensus 226 -------~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~---~~~~~~~~~~~~~~----~~~~gk~VvViGg 291 (485)
T TIGR01317 226 -------KEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSA---TKALLGKDFKDIIF----IKAKGKKVVVIGG 291 (485)
T ss_pred -------HhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHH---hhhhcccccccccc----ccCCCCEEEEECC
Confidence 45799999999998 8889999975 3444322221111 10000000000000 0023469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC---------cccH--HHHHHHHHHHHhcCCEE-Eec-
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDD--RLRHYATTQLSKSGVRL-VRG- 304 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~---------~~~~--~~~~~~~~~l~~~gV~i-~~~- 304 (436)
|++|+|+|..+.+.+ ..+|+++++.+ .+. .++. +.....++..+..||.+ +.+
T Consensus 292 G~~g~d~a~~a~~~g-------------a~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~ 358 (485)
T TIGR01317 292 GDTGADCVGTSLRHG-------------AASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSI 358 (485)
T ss_pred cHHHHHHHHHHHHcC-------------CCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEec
Confidence 999999988777655 26899998743 211 1111 11122333344456543 233
Q ss_pred ceEEEeC---Ce---EEE--------cCC-----------cEEecceEEEecCCC-Cc-hhcccCCCCCCCCCcEEe-CC
Q 013810 305 IVKDVDS---QK---LIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKSPGGRIGI-DE 356 (436)
Q Consensus 305 ~v~~i~~---~~---v~~--------~~g-----------~~i~~D~vi~a~G~~-p~-~~~~~~~l~~~~~G~i~v-d~ 356 (436)
.+.++.. +. +++ ++| .++++|.||+++|+. |+ .+++.++++++++|++.+ |+
T Consensus 359 ~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~ 438 (485)
T TIGR01317 359 LTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYD 438 (485)
T ss_pred CcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCC
Confidence 3444432 11 221 123 269999999999996 76 578888998888898865 56
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+++ |+.|+|||+|||+.. +.++..|+.+|+.||.+|..+..
T Consensus 439 ~~~-Ts~~gVfAaGD~~~g---------~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 439 DYS-TSIPGVFAAGDCRRG---------QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred Cce-ECCCCEEEeeccCCC---------cHHHHHHHHHHHHHHHHHHHHHh
Confidence 787 999999999999976 67889999999999999987654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-31 Score=270.69 Aligned_cols=345 Identities=19% Similarity=0.175 Sum_probs=206.5
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCcccccccc-CCCCCCCCCCCcEEEECCchHHHHHHH
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYS-GLGPTKANEKPRVVVLGSGWAGCRLMK 79 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~VvIIGgG~AGl~aA~ 79 (436)
++|...|.|+|...|+..|.+.....+. ....+.++..+.... ..+. ..........++|+|||+|+||+++|.
T Consensus 226 np~~~~~g~vC~~~Ce~~C~~~~~~~~~-~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~ 300 (604)
T PRK13984 226 NPLSMVCGRVCTHKCETVCSIGHRGEPI-AIRWLKRYIVDNVPV----EKYSEILDDEPEKKNKKVAIVGSGPAGLSAAY 300 (604)
T ss_pred CCccchhhCcCCchHHHhhcccCCCCCe-EeCcHHHHHHhHHHH----cCcccccCCCcccCCCeEEEECCCHHHHHHHH
Confidence 3677889999999999999876543322 122233222222110 0010 011112235678999999999999999
Q ss_pred hcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCc
Q 013810 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (436)
Q Consensus 80 ~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~ 159 (436)
.|++.|++|+|||+++........ +.... .+...+........+..++.++.+.....+ +.. +..
T Consensus 301 ~L~~~G~~v~vie~~~~~gG~~~~-----~i~~~-~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-----~~~----~~~ 365 (604)
T PRK13984 301 FLATMGYEVTVYESLSKPGGVMRY-----GIPSY-RLPDEALDKDIAFIEALGVKIHLNTRVGKD-----IPL----EEL 365 (604)
T ss_pred HHHHCCCeEEEEecCCCCCceEee-----cCCcc-cCCHHHHHHHHHHHHHCCcEEECCCEeCCc-----CCH----HHH
Confidence 999999999999998764322110 11111 111111111112234457777665333211 111 111
Q ss_pred ccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEEC
Q 013810 160 RTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (436)
Q Consensus 160 ~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG 237 (436)
...||+||+|||+. ++.+++||.+ .+++. .......+...+.. ....+ ..+++|+|||
T Consensus 366 --------~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~---~~~~~-------~~~k~VvVIG 425 (604)
T PRK13984 366 --------REKHDAVFLSTGFTLGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRG---EGPKP-------KIPRSLVVIG 425 (604)
T ss_pred --------HhcCCEEEEEcCcCCCccCCCCCcCCcCeEe--HHHHHHHHHhhhcc---CCCcC-------CCCCcEEEEC
Confidence 45799999999997 6888999975 33332 22222222222100 00000 1235999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce-
Q 013810 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK- 313 (436)
Q Consensus 238 ~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~- 313 (436)
||++|+|+|..+.+++.. .....+|+++...+....++....+ +.+ +.+.||+++.+. +.++.. +.
T Consensus 426 GG~~g~e~A~~l~r~~~~--------~~g~~~V~v~~~~r~~~~~~~~~~e-~~~-~~~~GV~i~~~~~~~~i~~~~g~v 495 (604)
T PRK13984 426 GGNVAMDIARSMARLQKM--------EYGEVNVKVTSLERTFEEMPADMEE-IEE-GLEEGVVIYPGWGPMEVVIENDKV 495 (604)
T ss_pred CchHHHHHHHHHHhcccc--------ccCceEEEEeccccCcccCCCCHHH-HHH-HHHcCCEEEeCCCCEEEEccCCEE
Confidence 999999999999875410 0012478876433222222222211 222 345799999873 555532 11
Q ss_pred --EEEc-------------------CCcEEecceEEEecCCCCc-hhcc-cC--CCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 314 --LILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 314 --v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~--~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
|++. +++++++|.||+++|+.|+ .++. .+ +++. ++|+|.||+++| |++|+|||
T Consensus 496 ~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~-Ts~~gVfA 573 (604)
T PRK13984 496 KGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQ-TSIPWLFA 573 (604)
T ss_pred EEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCc-cCCCCEEE
Confidence 2221 1236999999999999998 4443 22 3444 468899999999 99999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+|||+.. + ....|+.+|+.||.+|..+..
T Consensus 574 aGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 574 GGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred ecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999985 4 457899999999999987653
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=266.40 Aligned_cols=345 Identities=16% Similarity=0.130 Sum_probs=217.7
Q ss_pred Cccccccccccc--cccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHH
Q 013810 1 MSLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLM 78 (436)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA 78 (436)
+||...+.|+|. ..|+..|.+..... ......+.++..+.... ..+...........++|+|||||||||+||
T Consensus 252 np~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~i~~l~r~~~d~~~~----~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA 326 (639)
T PRK12809 252 SSLPEICGRVCPQDRLCEGACTLKDHSG-AVSIGNLERYITDTALA----MGWRPDVSKVVPRSEKVAVIGAGPAGLGCA 326 (639)
T ss_pred CCcchhhcccCCCCCChHHhccCCCcCC-CcChhHHHHHHHHHHHH----hCCCCCCCcccCCCCEEEEECcCHHHHHHH
Confidence 578999999997 57999998775443 33344444444432211 111111111123468999999999999999
Q ss_pred HhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC
Q 013810 79 KGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (436)
Q Consensus 79 ~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g 158 (436)
..|++.|++|+|+|+.+..+... ..|.+.+ .+...+.+....+....++.++.+..... .+.+. +
T Consensus 327 ~~L~~~G~~Vtv~e~~~~~GG~l-----~~gip~~-~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~-----~~~~~---~- 391 (639)
T PRK12809 327 DILARAGVQVDVFDRHPEIGGML-----TFGIPPF-KLDKTVLSQRREIFTAMGIDFHLNCEIGR-----DITFS---D- 391 (639)
T ss_pred HHHHHcCCcEEEEeCCCCCCCee-----eccCCcc-cCCHHHHHHHHHHHHHCCeEEEcCCccCC-----cCCHH---H-
Confidence 99999999999999987643221 1122111 11112222222234456777766532211 11111 1
Q ss_pred cccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE
Q 013810 159 LRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi 236 (436)
. ...||+|++|||+. +..+++||.+ .+++...++.. .....+ ..+....... .....+++|+||
T Consensus 392 l--------~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~--~~~~~~---~~~~~~~~~~-~~~~~gk~vvVi 457 (639)
T PRK12809 392 L--------TSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLT--AHTRQL---MGLPESEEYP-LTDVEGKRVVVL 457 (639)
T ss_pred H--------HhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHH--HHHHhh---ccCccccccc-cccCCCCeEEEE
Confidence 1 35699999999996 4567888875 34443211111 000011 0000000000 001235699999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--
Q 013810 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-- 311 (436)
Q Consensus 237 G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-- 311 (436)
|+|++++++|..+.+++ ..+|+++++.. .++....++. .+++.||++++.. ++++..
T Consensus 458 GgG~~a~d~a~~~~~~G-------------a~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~~ 519 (639)
T PRK12809 458 GGGDTTMDCLRTSIRLN-------------AASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACDE 519 (639)
T ss_pred CCcHHHHHHHHHHHHcC-------------CCeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEECC
Confidence 99999999998877665 15899999853 2444333322 3467799999984 777742
Q ss_pred -CeE---EE---c------CC-----------cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeCC----CCCCC
Q 013810 312 -QKL---IL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRVP 361 (436)
Q Consensus 312 -~~v---~~---~------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~~~~t 361 (436)
+.| ++ . +| .++++|.||+|+|+.|+ .+++.++++++++|+|.+|+ ++| |
T Consensus 520 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~-T 598 (639)
T PRK12809 520 DGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQ-T 598 (639)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcc-c
Confidence 222 11 1 12 26899999999999997 46777889999999999986 377 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.|+|||+|||+.. +.++..|+.+|+.||++|..+..
T Consensus 599 s~~gVfA~GD~~~g---------~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 599 HLKKVFAGGDAVHG---------ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCCCEEEcCCCCCC---------chHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999986 67889999999999999987653
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=215.15 Aligned_cols=289 Identities=16% Similarity=0.157 Sum_probs=205.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchhhhhhcCcccccccccchhhcchhhhcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGS 133 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (436)
+.+|+|||.|||+.+||+++++..++.+|+|-.- ++.-.... ....|.++.- ....+.+.......+.+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~v-eNfPGFPdgi-~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDV-ENFPGFPDGI-TGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeecc-ccCCCCCccc-ccHHHHHHHHHHHHhhcc
Confidence 3589999999999999999999999999998421 11111000 0111111111 112344444455677899
Q ss_pred EEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 013810 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 134 ~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
.++...|.++|...+.+.+.+ +.+ .+.+|.+|+|||+..++..+||..+.-|+.+.+..+.-+.+.
T Consensus 86 ~i~tEtVskv~~sskpF~l~t--d~~--------~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGa---- 151 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWT--DAR--------PVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGA---- 151 (322)
T ss_pred eeeeeehhhccccCCCeEEEe--cCC--------ceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCc----
Confidence 999999999999888887764 443 789999999999999999999974443555554444333222
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH-H
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT-T 292 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~-~ 292 (436)
.|- .+.|..+|||||.+++|-|.+|..++ .+|++++|.+.++ .+..++ +
T Consensus 152 -----api------frnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~fR-----As~~Mq~r 201 (322)
T KOG0404|consen 152 -----API------FRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHFR-----ASKIMQQR 201 (322)
T ss_pred -----chh------hcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhhh-----HHHHHHHH
Confidence 121 34457999999999999999999998 9999999976553 233333 3
Q ss_pred HHHhcCCEEEecc-eEEEeCC-----e-----EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ-----K-----LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRV 360 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~-----~-----v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~ 360 (436)
..+..+|+++.++ +.+..++ + +.+.+.+.++++-+++++|..|+ .+++. ++++|.+|+|.+-+.--.
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~ 280 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSL 280 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCccc
Confidence 4455689999985 3333322 2 33334457999999999999999 57776 899999999999866555
Q ss_pred CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|++|++||+||+.... .+++..|...|.++|-..-.+
T Consensus 281 TsvpG~FAAGDVqD~k--------yRQAvTaAgsGciaaldAe~y 317 (322)
T KOG0404|consen 281 TSVPGVFAAGDVQDKK--------YRQAVTAAGSGCIAALDAERY 317 (322)
T ss_pred ccccceeeccccchHH--------HHHHHhhhccchhhhhhHHHH
Confidence 9999999999999752 467777778888777654433
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=253.83 Aligned_cols=333 Identities=15% Similarity=0.123 Sum_probs=208.2
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
+||...|.|+|...|+..|.+.....+... ..+.++..+..... .+ ..+.......++|+|||+||+||++|..
T Consensus 82 np~~~~~grvc~~~ce~~C~r~~~~~~v~i-~~l~r~~~~~~~~~----~~-~~~~~~~~~g~~V~VIGaGpaGL~aA~~ 155 (564)
T PRK12771 82 NPFPAVMGRVCYHPCESGCNRGQVDDAVGI-NAVERFLGDYAIAN----GW-KFPAPAPDTGKRVAVIGGGPAGLSAAYH 155 (564)
T ss_pred CCcchHhhCcCCchhHHhccCCCCCCCcCH-HHHHHHHHHHHHHc----CC-CCCCCCCCCCCEEEEECCCHHHHHHHHH
Confidence 478889999999999999987754433322 22434332211100 00 0111112345799999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|++.|++|+|+|+.+.+..... .+.+.+ .+...+...........++.+..+...+.+... +..
T Consensus 156 l~~~G~~V~v~e~~~~~GG~l~-----~gip~~-~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~---------~~~- 219 (564)
T PRK12771 156 LRRMGHAVTIFEAGPKLGGMMR-----YGIPAY-RLPREVLDAEIQRILDLGVEVRLGVRVGEDITL---------EQL- 219 (564)
T ss_pred HHHCCCeEEEEecCCCCCCeee-----ecCCCc-cCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCH---------HHH-
Confidence 9999999999999876533211 111111 111111111112233456665544221111100 000
Q ss_pred cCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
...||+||+|||+.. ..+.++|.+ .+++..- .+...... .. ....+++|+|+|+
T Consensus 220 -------~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~------~~l~~~~~---~~--------~~~~gk~v~ViGg 275 (564)
T PRK12771 220 -------EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAV------DFLRAVGE---GE--------PPFLGKRVVVIGG 275 (564)
T ss_pred -------HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHH------HHHHHhhc---cC--------CcCCCCCEEEECC
Confidence 235999999999974 455788754 2222211 11111100 00 0022458999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCe--
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQK-- 313 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~-- 313 (436)
|.++++++..+.+++ ..+|+++++.+ .++....++ +.+.+.||+++++. +.++..+.
T Consensus 276 g~~a~d~a~~a~~lg-------------a~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~ 337 (564)
T PRK12771 276 GNTAMDAARTARRLG-------------AEEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENG 337 (564)
T ss_pred hHHHHHHHHHHHHcC-------------CCEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCC
Confidence 999999998877654 26789998853 334333332 23456799999874 77775321
Q ss_pred --------EEE----cC-------C--cEEecceEEEecCCCCc-hhccc-CCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 314 --------LIL----ND-------G--TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 314 --------v~~----~~-------g--~~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
+.. .+ | .++++|.||+|+|+.|+ .++.+ .++. +++|+|.||++.+.|+.|+|||+|
T Consensus 338 ~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~G 416 (564)
T PRK12771 338 ATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGG 416 (564)
T ss_pred EEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEecc
Confidence 111 12 2 36999999999999998 56664 5677 778999999843339999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
||+.. ++++..|+.||+.||.+|..+..
T Consensus 417 D~~~g---------~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 417 DMVPG---------PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CcCCC---------chHHHHHHHHHHHHHHHHHHHHc
Confidence 99986 78899999999999999976654
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=256.81 Aligned_cols=286 Identities=15% Similarity=0.109 Sum_probs=189.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-eE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (436)
..+||+|||||||||+||.+|++.|++|+|||+++....+..... ...+.......+.....++....++.++. .+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 357999999999999999999999999999999876543321111 00111111111122333334344577765 47
Q ss_pred eEeEeCCCCEEEEEEec-------CCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETVT-------DELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~-------~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~ 211 (436)
|.+++.......+.... .+.. ......+.||+||||||+.++.+++||.+ ++++............
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~--~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~---- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVP--RERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRY---- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCcc--ccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhh----
Confidence 77776533222221110 0100 00012588999999999999999999976 4555543333221100
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~ 291 (436)
.. ..+++|+|||+|++++|+|..|++.+ ...|+++++.+.+ ...+.
T Consensus 313 -----~~---------~~gk~VvViG~G~~g~e~A~~L~~~G-------------~~vV~vv~~~~~~-------~~~l~ 358 (985)
T TIGR01372 313 -----GV---------APGKRIVVATNNDSAYRAAADLLAAG-------------IAVVAIIDARADV-------SPEAR 358 (985)
T ss_pred -----Cc---------CCCCeEEEECCCHHHHHHHHHHHHcC-------------CceEEEEccCcch-------hHHHH
Confidence 00 12358999999999999999999765 1457888765322 23456
Q ss_pred HHHHhcCCEEEecc-eEEEeCC----eEEEc----CCcEEecceEEEecCCCCc-hhcccCCCCC--CCC--CcEEeCCC
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPK--SPG--GRIGIDEW 357 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~----~v~~~----~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~--~~~--G~i~vd~~ 357 (436)
+.|++.||+++.+. +.+++++ .|++. ++++++||.|+++.|+.|+ .++..+++++ ++. +++.
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~---- 434 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP---- 434 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec----
Confidence 67889999999995 8888653 35554 4567999999999999999 5777777654 221 2221
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|+.|+||++|||++ ...+..|+.+|+.||..|+..
T Consensus 435 --~t~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i~~~ 470 (985)
T TIGR01372 435 --GDAVQGCILAGAANG----------LFGLAAALADGAAAGAAAARA 470 (985)
T ss_pred --CCCCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHHHHH
Confidence 278999999999997 457788999999999988643
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=237.71 Aligned_cols=304 Identities=15% Similarity=0.099 Sum_probs=181.7
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..++|+|||||||||+||..|++ .|++|+|||+.+..+.... ++.. ++.... ..+......+....++.|+.+
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr-~gva---P~~~~~-k~v~~~~~~~~~~~~v~~~~n 99 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR-SGVA---PDHPET-KNVTNQFSRVATDDRVSFFGN 99 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe-eccC---CCcchh-HHHHHHHHHHHHHCCeEEEcC
Confidence 35789999999999999999986 7999999999986543211 1111 111111 111111222334466777654
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
...+ ..+.+. +- ...||+||||||+.+ +.++|||.+ .+++...++.....-....
T Consensus 100 v~vg-----~dvtl~---~L---------~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~------ 156 (491)
T PLN02852 100 VTLG-----RDVSLS---EL---------RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDC------ 156 (491)
T ss_pred EEEC-----ccccHH---HH---------hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhh------
Confidence 2222 122221 11 346999999999985 778999976 4555444332211100000
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH--------HHHHhhhcCCCCccEEEEEeCCCC--CCcccHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM--------RDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRL 286 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~--------~~~~~~~~~~~~~~~V~lv~~~~~--l~~~~~~~ 286 (436)
...+. ....+++|+|||+|++|+|+|..|.+.+. +........ ..-.+|+++.|... .+....++
T Consensus 157 ~~~~~----~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~-~~~~~V~iv~RRg~~~~~ft~~El 231 (491)
T PLN02852 157 VHLPP----DLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRG-SSVRKVYLVGRRGPVQAACTAKEL 231 (491)
T ss_pred hhhhh----cccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhh-CCCCEEEEEEcCChHhCCCCHHHH
Confidence 00000 00234699999999999999999976410 111111111 12267999998531 11111121
Q ss_pred HH-------------------------------------HHHHHHHh---------cCCEEEecc-eEEEeC-----C--
Q 013810 287 RH-------------------------------------YATTQLSK---------SGVRLVRGI-VKDVDS-----Q-- 312 (436)
Q Consensus 287 ~~-------------------------------------~~~~~l~~---------~gV~i~~~~-v~~i~~-----~-- 312 (436)
.+ .+.+...+ ++|.+++.. ..+|.. +
T Consensus 232 rel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v 311 (491)
T PLN02852 232 RELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHV 311 (491)
T ss_pred HHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcE
Confidence 11 12222112 467776653 444421 1
Q ss_pred -eEEEc-----------------CCc--EEecceEEEecCCC--Cc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 313 -KLILN-----------------DGT--EVPYGLLVWSTGVG--PS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 313 -~v~~~-----------------~g~--~i~~D~vi~a~G~~--p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
++++. +|+ +++||.||.++|++ |. . +....++..+.+|+|.+|+.++ |+.|+||
T Consensus 312 ~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~-T~ipGvy 390 (491)
T PLN02852 312 AGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGA-DTEPGLY 390 (491)
T ss_pred EEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCc-cCCCCEE
Confidence 12221 232 58999999999998 43 2 2233456667789999998888 8999999
Q ss_pred EeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 368 AVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 368 a~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|+|||..++ ...+..++.+|+.++.+|..+.
T Consensus 391 AaGDi~~Gp--------~gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 391 VVGWLKRGP--------TGIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred EeeeEecCC--------CCeeeecHhhHHHHHHHHHHHH
Confidence 999999873 4488899999999999998764
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=228.05 Aligned_cols=290 Identities=25% Similarity=0.281 Sum_probs=220.8
Q ss_pred EEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceec--chhhhhhcCcccccccccchhhcchhhhcCCCcEEEE-eE
Q 013810 65 VVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (436)
Q Consensus 65 VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (436)
++|||+|+||+++|..|++ .+.+++++..++...|. +.......+......+..... +....++.+.. .+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-----FNRATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-----hHHhhCCEEeeCCE
Confidence 5899999999999999887 44568777776654443 333333322222222211111 12234566555 48
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (436)
|+.+|+..+.+.+. ++ ++.||+||+|||+.+..++ .......++.+..+++..+.....
T Consensus 76 v~~id~~~~~v~~~---~g---------~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (415)
T COG0446 76 VTSIDPENKVVLLD---DG---------EIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAE-------- 134 (415)
T ss_pred EEEecCCCCEEEEC---CC---------cccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHh--------
Confidence 99999999998875 34 6889999999999998887 222256788888888888877642
Q ss_pred CCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCccc-HHHHHHHHHHHHhc
Q 013810 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (436)
Q Consensus 220 p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (436)
..++++|+|+|+.|+++|..+...| .+|++++.. +.++.+. +++.+.+.+.++++
T Consensus 135 ---------~~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 135 ---------PPKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ---------ccCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 1248999999999999999999876 999999995 5666655 88999999999999
Q ss_pred CCEEEecc-eEEEeCCe-------EEEcCCcEEecceEEEecCCCCch-hcccCC-CCCCCCCcEEeCCCCCCCC-CCCE
Q 013810 298 GVRLVRGI-VKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPST-LVKSLD-LPKSPGGRIGIDEWLRVPS-VQDV 366 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~-------v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~-l~~~~~G~i~vd~~~~~t~-~~~V 366 (436)
||+++.+. +.+++.+. +...++.++++|++++++|.+|+. +....+ .....+|++.||++++ ++ .++|
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~-~~~~~~v 270 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGG-TSKDPDV 270 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccc-cCCCCCE
Confidence 99999985 88887642 577788899999999999999985 444443 1456678999999999 76 9999
Q ss_pred EEeccccccccCC-CCccCCccHHHHHHHHHHHHhhhhh
Q 013810 367 FAVGDCSGYLEST-GKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 367 ya~GD~~~~~~~~-~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
||+|||+..+... ++......+..|..+++.++.++..
T Consensus 271 ~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 271 YAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred EeccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 9999999987643 4555578899999999999999984
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-28 Score=217.66 Aligned_cols=282 Identities=18% Similarity=0.196 Sum_probs=193.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh---hhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
..+||+||||||||-+||++.+|.|.+.-|+-. +|+.+.+-. ....+.+... ...+....+..-+.+.+.+..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~te--Gpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETE--GPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheecccccc--chHHHHHHHHHHhhcCchhhh
Confidence 458999999999999999999999998766532 232221110 1111111111 011222222233344555443
Q ss_pred e-EeEeEeCC---CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHH
Q 013810 138 S-HCAGIDTD---NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKL 210 (436)
Q Consensus 138 ~-~v~~id~~---~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~ 210 (436)
. +.+++.+. ...+.+ .+.+|. .+.++.+|||||++.+..++||.++ ....++.-++.
T Consensus 286 ~qra~~l~~a~~~~~l~ev-~l~nGa--------vLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDG------- 349 (520)
T COG3634 286 LQRASKLEPAAVEGGLIEV-ELANGA--------VLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG------- 349 (520)
T ss_pred hhhhhcceecCCCCccEEE-EecCCc--------eeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCC-------
Confidence 2 44555542 222222 334776 8999999999999999999999862 22222222221
Q ss_pred HHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~ 290 (436)
|- .++|+|+|||||++|+|.|..|+... ..||+++-.+.+. ..+.+
T Consensus 350 ---------PL------F~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eLk-----AD~VL 395 (520)
T COG3634 350 ---------PL------FKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPELK-----ADAVL 395 (520)
T ss_pred ---------cc------cCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhhh-----hHHHH
Confidence 11 44569999999999999999999887 8999998754432 33456
Q ss_pred HHHHHhc-CCEEEecc-eEEEeCC-----eEEEc---CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC
Q 013810 291 TTQLSKS-GVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW 357 (436)
Q Consensus 291 ~~~l~~~-gV~i~~~~-v~~i~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~ 357 (436)
++.|+.. +|+++++. -++|.++ ++... .|+ .++-+-|++-+|..|| +|++.. ++++++|-|.||..
T Consensus 396 q~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~ 474 (520)
T COG3634 396 QDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDAR 474 (520)
T ss_pred HHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecC
Confidence 6666654 89999984 6777654 33332 233 4778899999999999 688887 88999999999999
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.. |+.|+|||+|||+..+ .+++..|+.+|..|+-+.+.+.
T Consensus 475 g~-TsvpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~AFDyL 514 (520)
T COG3634 475 GE-TNVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLSAFDYL 514 (520)
T ss_pred CC-cCCCceeecCcccCCc--------cceEEEEecCcchhhhhhhhhh
Confidence 99 9999999999999975 5778888888888887776554
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=211.97 Aligned_cols=304 Identities=18% Similarity=0.232 Sum_probs=210.4
Q ss_pred CCCCCcEEEECCchHHHHHHHhccc-CC-CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDT-SL-YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~-~g-~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
..++.+|+|||||.+|+++|..+.+ .+ -+|.|||+.++++|+|.+.-.-.|.........+..++.+ .+..++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~wi 110 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATWI 110 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHHH
Confidence 3467899999999999999999976 33 3699999999999999887665565555444444444433 356667
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-----cccccccChHHHHHHHHHHH
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-----ENATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-----~~~~~~~~~~~~~~~~~~~~ 211 (436)
+.+|..++++++.+.+. +|+ +|+|||+|||+|..-++-.|+|.. +++.+.++.....+..+.+.
T Consensus 111 ~ekv~~f~P~~N~v~t~---gg~--------eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~ 179 (446)
T KOG3851|consen 111 KEKVKEFNPDKNTVVTR---GGE--------EISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELM 179 (446)
T ss_pred HHHHHhcCCCcCeEEcc---CCc--------EEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHH
Confidence 78999999999999875 666 999999999999998888888873 57788888888888777763
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCccc-HHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD-DRLRHYA 290 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~-~~~~~~~ 290 (436)
.. +++.-+--.-++++-|--|-.-.-+..+..+++.. .+ .++.++....+-.-|+ ....+.+
T Consensus 180 ~f--------------k~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~g-vR--d~a~iiy~Tsl~~iFgVk~Y~~AL 242 (446)
T KOG3851|consen 180 NF--------------KKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRG-VR--DNANIIYNTSLPTIFGVKHYADAL 242 (446)
T ss_pred hc--------------cCCceEEecCCCccccCCCchhhhhhhHHHHHHhC-cc--ccccEEEecCccceecHHHHHHHH
Confidence 21 11111222222222211111111111122222211 22 3444444432211222 4566788
Q ss_pred HHHHHhcCCEEEecc-eEEEeCC--eEEEc---C-C--cEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCC-CCC
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQ--KLILN---D-G--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW-LRV 360 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~--~v~~~---~-g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~-~~~ 360 (436)
++..++++|++...+ +.++..+ ..+++ + | ++++++++.+.+.+++.++++...+. |..||+.||.. +|+
T Consensus 243 ~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~a-dktGfvdVD~~TlQs 321 (446)
T KOG3851|consen 243 EKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLA-DKTGFVDVDQSTLQS 321 (446)
T ss_pred HHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCccc-CcccceecChhhhcc
Confidence 888889999998775 6666542 22232 2 4 46999999999999998888877754 88899999965 999
Q ss_pred CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
+.+||||++|||.+.|+ .+++..+..|...+-+|+.
T Consensus 322 ~kypNVFgiGDc~n~Pn-------sKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 322 KKYPNVFGIGDCMNLPN-------SKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred ccCCCceeeccccCCCc-------hhhHHHHHhcCchhhhhHH
Confidence 99999999999999876 6788888888888888885
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=227.34 Aligned_cols=274 Identities=14% Similarity=0.100 Sum_probs=176.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh-----------------------hhhcC---------
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA-----------------------STCVG--------- 109 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~-----------------------~~~~~--------- 109 (436)
.++|+|||||+|||+||++|++.|++|+|+|+++..+...... .....
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 4789999999999999999999999999999987653321110 00000
Q ss_pred -cccccc------------cccchhhcchhhhcCCCcE---EEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccE
Q 013810 110 -TLEFRS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDK 173 (436)
Q Consensus 110 -~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~ 173 (436)
.+.... ....+.++...+.+..++. .+..+|+.+++.++.+.+.....+.. ..+..||+
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~-----~~~~~~d~ 164 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGF-----SKDEIFDA 164 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCc-----eEEEEcCE
Confidence 000000 0122333444445555554 34468999998777776654322211 11467999
Q ss_pred EEEeCC--CCCCCCCCCCCc---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHH
Q 013810 174 LVIALG--AEASTFGIHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (436)
Q Consensus 174 lViAtG--~~~~~~~i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~ 248 (436)
|||||| +.|+.|++||.+ ...++..++..... .++++|+|||+|.+|+|+|.+
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~----------------------~~gk~VvVVG~G~Sg~diA~~ 222 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDP----------------------FKNEVVVVIGNFASGADISRD 222 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCCccc----------------------cCCCEEEEECCCcCHHHHHHH
Confidence 999999 679999999975 23344444443222 234599999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEe-CCeEEEcCCcEEecce
Q 013810 249 LSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD-SQKLILNDGTEVPYGL 326 (436)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~-~~~v~~~~g~~i~~D~ 326 (436)
|+..+ ++|++++|....... +.+......++.+ .|..+. ++.|++.||+++++|.
T Consensus 223 L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~ 279 (461)
T PLN02172 223 IAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADT 279 (461)
T ss_pred HHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCCE
Confidence 99876 899999985321110 0111112333434 355543 4569999999999999
Q ss_pred EEEecCCCCc-hhcccCCCCCCCCCcEEeCCC--------CCCCC-CCCEEEeccccccccCCCCccCCccHHHHHHHHH
Q 013810 327 LVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--------LRVPS-VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLH 396 (436)
Q Consensus 327 vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--------~~~t~-~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~ 396 (436)
||+|+|++++ +++...+ .+.+|++ .=... .|+++.+|=... ......+..|++
T Consensus 280 Ii~~TGy~~~~pfL~~~~-------~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~----------~~~f~~~E~Qa~ 342 (461)
T PLN02172 280 IVHCTGYKYHFPFLETNG-------YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM----------GIQFVMFEIQSK 342 (461)
T ss_pred EEECCcCCccccccCccc-------ceeeCCCcchhhHHhhcCCCCCCcEEEEecccc----------ccCchhHHHHHH
Confidence 9999999999 6765433 3444332 11133 489999996643 234566778888
Q ss_pred HHHhhh
Q 013810 397 LFQKPS 402 (436)
Q Consensus 397 ~aa~~i 402 (436)
.+|+-+
T Consensus 343 ~~a~v~ 348 (461)
T PLN02172 343 WVAAVL 348 (461)
T ss_pred HHHHHH
Confidence 877654
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=209.74 Aligned_cols=311 Identities=19% Similarity=0.290 Sum_probs=225.3
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceec-chhhhh--hcCcc------cccccc-------c----
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT-PLLAST--CVGTL------EFRSVA-------E---- 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~-~~~~~~--~~~~~------~~~~~~-------~---- 118 (436)
.+.-.+|||||.|..+++...+. .+.+|.+|..++..+|. |.+... ..+.+ .+..+. .
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45678999999999998888765 56789999888777664 322211 11110 000000 0
Q ss_pred -chhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC-CCC----c
Q 013810 119 -PIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGV----K 191 (436)
Q Consensus 119 -~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i-~g~----~ 191 (436)
.+..........-++-+.++ +|..||.+++.|.+. ||. +|.||.++||||.+|..... ... .
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~Ln---DG~--------~I~YdkcLIATG~~Pk~l~~~~~A~~evk 325 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILN---DGT--------TIGYDKCLIATGVRPKKLQVFEEASEEVK 325 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEec---CCc--------EeehhheeeecCcCcccchhhhhcCHHhh
Confidence 00000000122345666666 889999999999886 787 99999999999999987642 211 1
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
..+..++.+.+...+.+-+. ..++|.|||+|..|.|+|+.|.+..+ ..+.+|+
T Consensus 326 ~kit~fr~p~DF~rlek~~a-----------------ek~siTIiGnGflgSELacsl~rk~r----------~~g~eV~ 378 (659)
T KOG1346|consen 326 QKITYFRYPADFKRLEKGLA-----------------EKQSITIIGNGFLGSELACSLKRKYR----------NEGVEVH 378 (659)
T ss_pred hheeEEecchHHHHHHHhhh-----------------hcceEEEEcCcchhhhHHHHHHHhhh----------ccCcEEE
Confidence 45566677777777766542 22489999999999999999987651 2457787
Q ss_pred EEeCC--CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC----CeEEEcCCcEEecceEEEecCCCCc-hhcccCC
Q 013810 272 LIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (436)
Q Consensus 272 lv~~~--~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~ 343 (436)
-+... ..-.-+++.++++-.+.+++.||.++.+. |..+.. -.+.++||.++..|+|++|+|-.|| ++++..|
T Consensus 379 QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 379 QVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred EeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccccc
Confidence 66553 22334567888899999999999999994 655532 2467899999999999999999999 6888899
Q ss_pred CCCCCC-CcEEeCCCCCCCCCCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhcC-----Cceee
Q 013810 344 LPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLAR-----NWCWF 412 (436)
Q Consensus 344 l~~~~~-G~i~vd~~~~~t~~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-----~~~~~ 412 (436)
|++|+. |.+.||..|+ ...|||++||++.+.+. .|.+ +..++.+|+-.|+.|++||..... ..||+
T Consensus 459 LeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF~D~~LGrR-RVehhdhavvSGRLAGENMtgAakpy~hqsmFWs 531 (659)
T KOG1346|consen 459 LEIDEKLGGFRVNAELK--ARENVWVAGDAACFEDGVLGRR-RVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWS 531 (659)
T ss_pred ceeecccCcEEeeheee--cccceeeecchhhhhcccccce-eccccccceeeceecccccccccCCccccceeee
Confidence 999876 7899999998 57899999999999885 4443 477888999999999999986543 35665
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=208.85 Aligned_cols=344 Identities=18% Similarity=0.155 Sum_probs=209.1
Q ss_pred ccccccccccccc--cccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHH
Q 013810 2 SLFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (436)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~ 79 (436)
+|...+.|.|.+. |.-.|.......+. ..-.+-....+.+-.... .... .......++|+|||||||||+||.
T Consensus 66 ~~p~~~gRvcp~~~~ceg~cv~~~~~~~v-~i~~le~~i~d~~~~~g~---i~~~-~~~~~tg~~VaviGaGPAGl~~a~ 140 (457)
T COG0493 66 NLPAITGRVCPLGNLCEGACVLGIEELPV-NIGALERAIGDKADREGW---IPGE-LPGSRTGKKVAVIGAGPAGLAAAD 140 (457)
T ss_pred CCccccCccCCCCCceeeeeeeccCCCch-hhhhHHHHHhhHHHHhCC---CCCC-CCCCCCCCEEEEECCCchHhhhHH
Confidence 5677788888888 87777655422222 111122222211111111 1111 222233489999999999999999
Q ss_pred hcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCc
Q 013810 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (436)
Q Consensus 80 ~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~ 159 (436)
.|++.|++|+++|+.+..... +..|.+.+. +...+.+....+....++.|+.+...+.+.....+
T Consensus 141 ~L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~k-l~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L--------- 205 (457)
T COG0493 141 DLSRAGHDVTVFERVALDGGL-----LLYGIPDFK-LPKDILDRRLELLERSGVEFKLNVRVGRDITLEEL--------- 205 (457)
T ss_pred HHHhCCCeEEEeCCcCCCcee-----EEecCchhh-ccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHH---------
Confidence 999999999999998764432 122333332 22333333333455566888776444433221111
Q ss_pred ccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEEC
Q 013810 160 RTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (436)
Q Consensus 160 ~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG 237 (436)
.-.||++++|||+ .|+..++||.+ ++++...++..... ............|. ..+++|+|||
T Consensus 206 --------~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~--~~~~~~~~~~~~~~------~~gk~vvVIG 269 (457)
T COG0493 206 --------LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLN--KEVLGDFAEDRTPP------AKGKRVVVIG 269 (457)
T ss_pred --------HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHH--HHHhcccccccCCC------CCCCeEEEEC
Confidence 3457999999998 58888999985 44443333222111 11100000012222 3447999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--C-CCCcccHHHHHHHHHHHHhcCCEEEec-c--------
Q 013810 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-I-------- 305 (436)
Q Consensus 238 ~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~-~l~~~~~~~~~~~~~~l~~~gV~i~~~-~-------- 305 (436)
+|.+++|++....++|. .+|+.+.+. . -....+........+...+.|+..... .
T Consensus 270 gG~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e 336 (457)
T COG0493 270 GGDTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNE 336 (457)
T ss_pred CCCCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecC
Confidence 99999999988877662 688877542 1 111122222344445566667665544 1
Q ss_pred ---eEEEeCCeEEEc--------------CC--cEEecceEEEecCCCCc--hh-cccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 306 ---VKDVDSQKLILN--------------DG--TEVPYGLLVWSTGVGPS--TL-VKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 306 ---v~~i~~~~v~~~--------------~g--~~i~~D~vi~a~G~~p~--~~-~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
|..+.-..+... .| .++++|+|+.++|+.++ .. ....++..+.+|.+.+|+.++.|+.
T Consensus 337 ~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~ 416 (457)
T COG0493 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSI 416 (457)
T ss_pred CCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccC
Confidence 222211111111 12 25889999999999988 22 2233677888999999999833999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
|++||.||+..+ ..+...|+.+|+.+|+.|.
T Consensus 417 ~~vfa~gD~~~g---------~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 417 PGVFAGGDAVRG---------AALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCeeeCceeccc---------hhhhhhHHhhchHHHHhhh
Confidence 999999999986 6789999999999999987
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=213.49 Aligned_cols=288 Identities=16% Similarity=0.229 Sum_probs=155.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh------------hhhhcCc----cccccc----------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL------------ASTCVGT----LEFRSV---------- 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~------------~~~~~~~----~~~~~~---------- 116 (436)
++|+|||||++||++|+.|.+.|++++++|+++..+..-.. ....... ..+.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999999999999999999876543211 0110000 001111
Q ss_pred -ccchhhcchhhhcCCCcE---EEEeEeEeEeCCC-----CEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCC
Q 013810 117 -AEPIARIQPAISREPGSY---FFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTF 185 (436)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~-----~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~ 185 (436)
...+.++...+.+..+.. .+.++|++++... +.+.+....+|. ..+..||+||+|||. .|+.|
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~------~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGK------EETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTE------EEEEEECEEEEEE-SSSCESB-
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCe------EEEEEeCeEEEcCCCcCCCCCC
Confidence 112333333334433332 2345777776432 356665544443 125679999999996 58877
Q ss_pred C--CCCCc---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 013810 186 G--IHGVK---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (436)
Q Consensus 186 ~--i~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~ 260 (436)
. +||.+ ..+++..++.+... -++|+|+|||+|.||+|+|.+|+..+
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~~~----------------------f~gKrVlVVG~g~Sg~DIa~el~~~a------- 206 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDPEP----------------------FKGKRVLVVGGGNSGADIAVELSRVA------- 206 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TGGG----------------------GTTSEEEEESSSHHHHHHHHHHTTTS-------
T ss_pred hhhhhhhhcCCeeEEccccCcChhh----------------------cCCCEEEEEeCCHhHHHHHHHHHHhc-------
Confidence 4 88875 45677777665443 33469999999999999999998754
Q ss_pred hcCCCCccEEEEEeCCC--CCCcc-----------------------cHHHHHHH-------------------------
Q 013810 261 YSHVKDYIHVTLIEANE--ILSSF-----------------------DDRLRHYA------------------------- 290 (436)
Q Consensus 261 ~~~~~~~~~V~lv~~~~--~l~~~-----------------------~~~~~~~~------------------------- 290 (436)
.+|++..|.. +++.+ +..+.+.+
T Consensus 207 -------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~ 279 (531)
T PF00743_consen 207 -------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQ 279 (531)
T ss_dssp -------CCEEEECC-----------------------------------------------------------------
T ss_pred -------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5666666531 22211 00111111
Q ss_pred --------HHHHHhcCCEEEecceEEEeCCeEEEcCCcEE-ecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCC
Q 013810 291 --------TTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRV 360 (436)
Q Consensus 291 --------~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i-~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~ 360 (436)
...+....|++. ..|+++++++|+++||+++ ++|.||+|||+..+ +++.+.-+... ++.+..-.++-.
T Consensus 280 ~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~vfp 357 (531)
T PF00743_consen 280 HPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHVFP 357 (531)
T ss_dssp -------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTTEE
T ss_pred cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 011112223322 2367788899999999875 69999999999988 77776434332 223333333211
Q ss_pred C--CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 361 P--SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 361 t--~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
+ ..|++..+|=+... ......+..|++.+|+-+.
T Consensus 358 ~~~~~ptLafIG~~~~~---------g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 358 PNLDHPTLAFIGLVQPF---------GSIFPIFELQARWAARVFS 393 (531)
T ss_dssp TETTSTTEEESS-SBSS---------S-HHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccc---------ccccccccccccccccccc
Confidence 2 45889999987542 2345678899998887554
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-24 Score=211.96 Aligned_cols=346 Identities=18% Similarity=0.208 Sum_probs=205.8
Q ss_pred CccccccccccccccccCCCCCccCCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 013810 1 MSLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (436)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~ 80 (436)
.+|.+++.|.|..+|.-.|...+..++...-+ .....-+.+ -..++-..-++.....++|.|||.|||||+||-.
T Consensus 1729 nnfpeftgrvcpapcegactlgiie~pv~iks-ie~aiid~a----f~egwm~p~pp~~rtg~~vaiigsgpaglaaadq 1803 (2142)
T KOG0399|consen 1729 NNFPEFTGRVCPAPCEGACTLGIIEPPVGIKS-IECAIIDKA----FEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQ 1803 (2142)
T ss_pred CCCccccCccCCCCcCcceeeecccCCccccc-hhhHHHHHH----HHhcCCccCCcccccCcEEEEEccCchhhhHHHH
Confidence 36899999999999999998888776664322 111111111 1122211122333456899999999999999999
Q ss_pred cccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc
Q 013810 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (436)
Q Consensus 81 L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~ 160 (436)
|-+.|+.|+|+|+++..+.. ...|.+... +...+.+....+....++.|+...-.+ +.+.+ ++-
T Consensus 1804 lnk~gh~v~vyer~dr~ggl-----l~ygipnmk-ldk~vv~rrv~ll~~egi~f~tn~eig-----k~vs~----d~l- 1867 (2142)
T KOG0399|consen 1804 LNKAGHTVTVYERSDRVGGL-----LMYGIPNMK-LDKFVVQRRVDLLEQEGIRFVTNTEIG-----KHVSL----DEL- 1867 (2142)
T ss_pred HhhcCcEEEEEEecCCcCce-----eeecCCccc-hhHHHHHHHHHHHHhhCceEEeecccc-----ccccH----HHH-
Confidence 99999999999999875432 111222221 112223333345566788887653222 11322 121
Q ss_pred cCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 161 ~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
.-.+|++|+|+|++ |+.+++||.+ .++...-.+.+.. .+.+ .-....+.. -..++|+|+||||
T Consensus 1868 -------~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~n--tk~l----ld~~~d~~~--~~~~gkkvivigg 1932 (2142)
T KOG0399|consen 1868 -------KKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKN--TKSL----LDSVLDGNY--ISAKGKKVIVIGG 1932 (2142)
T ss_pred -------hhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHh--HHhh----hccccccce--eccCCCeEEEECC
Confidence 34699999999985 8999999987 3333222221111 1111 111110100 1145679999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE---EEeCCC-------CCCccc----HHHH-HHHHHHHH----hcCC
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT---LIEANE-------ILSSFD----DRLR-HYATTQLS----KSGV 299 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~---lv~~~~-------~l~~~~----~~~~-~~~~~~l~----~~gV 299 (436)
|.+|-+|...-.++|. +.|. |+-.++ ..|..+ -+.. ..+++..- ..-|
T Consensus 1933 gdtg~dcigtsvrhg~-------------~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~v 1999 (2142)
T KOG0399|consen 1933 GDTGTDCIGTSVRHGC-------------KSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSV 1999 (2142)
T ss_pred CCccccccccchhhcc-------------ceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeee
Confidence 9999999888777662 2232 221111 111111 0000 11111110 0000
Q ss_pred ---EEEec---ceEEEeCCeEEEc-------------C-CcEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeC-C
Q 013810 300 ---RLVRG---IVKDVDSQKLILN-------------D-GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-E 356 (436)
Q Consensus 300 ---~i~~~---~v~~i~~~~v~~~-------------~-g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~ 356 (436)
+|+.+ .|+.++--+|+++ + .+.++||+||+|.|+... ....+++++.|+++.|..- .
T Consensus 2000 ltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~ 2079 (2142)
T KOG0399|consen 2000 LTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKD 2079 (2142)
T ss_pred eeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCc
Confidence 11111 1333322222221 1 245899999999999876 4688899999999888763 4
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+. |++++|||+|||..+ ..++.+|+++|+.+|+.+-..
T Consensus 2080 ~y~-t~v~~vfaagdcrrg---------qslvvwai~egrq~a~~vd~~ 2118 (2142)
T KOG0399|consen 2080 SYS-TDVAKVFAAGDCRRG---------QSLVVWAIQEGRQAARQVDEL 2118 (2142)
T ss_pred ccc-ccccceeecccccCC---------ceEEEEEehhhhHHHHHHHHH
Confidence 466 899999999999987 678999999999999998643
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=207.05 Aligned_cols=346 Identities=11% Similarity=0.112 Sum_probs=179.4
Q ss_pred Cccccccc-cccccccccCCCCCccCCCcccccccccccccCC---C--Ccc--ccccccC----CCCCCCCCCCcEEEE
Q 013810 1 MSLFKHLL-RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDAS---P--STV--QLTQYSG----LGPTKANEKPRVVVL 68 (436)
Q Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~--~~~~~~~----~~~~~~~~~~~VvII 68 (436)
+||...|. |+|. .|+..|-+. . ......+.+.++..+.. | .+. ...++.. .+.+...+.++|+||
T Consensus 313 NP~p~~~G~RVCp-~CE~aC~r~-~-dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVV 389 (1028)
T PRK06567 313 NPMVAATGHRICN-DCSKACIYQ-K-QDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVT 389 (1028)
T ss_pred CCChHhhCCccCc-chHHHhcCC-C-CCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEE
Confidence 46778888 9999 699999766 2 22334444555443310 0 000 0001111 011223457899999
Q ss_pred CCchHHHHHHHhcccCCCeEEEEcCCCcc--------------eecchhhhhh---c-Cccccc---ccccchhhc-chh
Q 013810 69 GSGWAGCRLMKGIDTSLYDVVCVSPRNHM--------------VFTPLLASTC---V-GTLEFR---SVAEPIARI-QPA 126 (436)
Q Consensus 69 GgG~AGl~aA~~L~~~g~~v~lie~~~~~--------------~~~~~~~~~~---~-~~~~~~---~~~~~~~~~-~~~ 126 (436)
|||||||+||.+|++.|++|+|+|+.+.. .|.+.+.... . |...+. ++.....+. ...
T Consensus 390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~i 469 (1028)
T PRK06567 390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLI 469 (1028)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHH
Confidence 99999999999999999999999986421 1222222221 1 111111 111111111 111
Q ss_pred hhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC-CCCCCCCCCCc-cccccccChHHHH
Q 013810 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQ 204 (436)
Q Consensus 127 ~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~ 204 (436)
+....++.++.+...+.+.....+ ....||+|+||||+ .|+.+++||.+ .+++...++....
T Consensus 470 l~~g~~v~~~~gv~lG~dit~edl----------------~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l 533 (1028)
T PRK06567 470 LERNNNFKYYDGVALDFNITKEQA----------------FDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTL 533 (1028)
T ss_pred HhcCCceEEECCeEECccCCHHHH----------------hhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHH
Confidence 112234555444333222211111 14569999999999 79999999976 3444333322111
Q ss_pred HHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHH-----------------------HHH----HH
Q 013810 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-----------------------IMR----DV 257 (436)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~-----------------------~~~----~~ 257 (436)
...+. ......+. ...+++|+|||||++|+|+|.....+ ..+ ++
T Consensus 534 ~~~~~----~~~~~~~~-----~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~ 604 (1028)
T PRK06567 534 QSGGA----FLKNSNTN-----MVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHA 604 (1028)
T ss_pred hhccc----ccccccCc-----ccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHH
Confidence 11000 00000000 01235899999999999999854431 000 00
Q ss_pred Hhhh--c-------CCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---Ce---EEE---
Q 013810 258 RQRY--S-------HVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK---LIL--- 316 (436)
Q Consensus 258 ~~~~--~-------~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~~---v~~--- 316 (436)
+... . ..+....|++++|.. -+|...-. .+.+.+ ..+.||+++... ..++.. +. +++
T Consensus 605 r~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~-~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~ 682 (1028)
T PRK06567 605 KLFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLN-HEELIY-ALALGVDFKENMQPLRINVDKYGHVESVEFENR 682 (1028)
T ss_pred HhhcchhccchhhhhhccCCceEEEecCChhhCCCCCCC-HHHHHH-HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEE
Confidence 1000 0 000112299999853 34443100 122222 345699998873 444421 11 111
Q ss_pred ------------c---------------CCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEe
Q 013810 317 ------------N---------------DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 317 ------------~---------------~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~ 369 (436)
. ...+++||.||+|+|..|+.... + .++-..
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~------~----------------~~~s~~ 740 (1028)
T PRK06567 683 NRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD------E----------------DKYSYF 740 (1028)
T ss_pred ecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc------c----------------cccccc
Confidence 0 11359999999999999993221 0 012234
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+-.. +..+...|+.+|+.++.+|..+.
T Consensus 741 ~d~~~~--------f~Gtvv~A~as~k~~~~~i~~~l 769 (1028)
T PRK06567 741 GDCNPK--------YSGSVVKALASSKEGYDAINKKL 769 (1028)
T ss_pred cCCCCc--------cccHHHHHHHHHHhHHHHHHHHH
Confidence 444432 23467899999999999996543
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=179.34 Aligned_cols=363 Identities=18% Similarity=0.210 Sum_probs=211.4
Q ss_pred cccccCCCCCccCCCcccccccccccccCCCCcccc-----ccccCCCCCCCCCCCcEEEECCchHHHHHHHhcccCCCe
Q 013810 13 AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL-----TQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDTSLYD 87 (436)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~ 87 (436)
+|.|.....+++-+.+|.|..- ++..+....++ +...++........++++|||||+||++||+.|++.|++
T Consensus 73 ln~y~~E~aniREqcswvH~~d---AtekA~dllr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~ 149 (622)
T COG1148 73 LNPYYLEIANIREQCSWVHMDD---ATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFK 149 (622)
T ss_pred eCHHHhhhhhHhhcceeeccch---HHHHHHHHHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCe
Confidence 6778888899999999987755 32222222222 223344444455668999999999999999999999999
Q ss_pred EEEEcCCCcceecch-hhhhhcCccccccc-ccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEe---------
Q 013810 88 VVCVSPRNHMVFTPL-LASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETV--------- 155 (436)
Q Consensus 88 v~lie~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~--------- 155 (436)
|+|+|+++.++.+-. +.... +..+. .--+......+...+++.+++- +|..++..-+.++++-.
T Consensus 150 v~LVEKepsiGGrmak~~k~F----P~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~ 225 (622)
T COG1148 150 VYLVEKEPSIGGRMAKLNKTF----PTNDCSICILAPKMVEVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDK 225 (622)
T ss_pred EEEEecCCcccccHHhhhccC----CCcccchhhccchhhhhccCCceeeeeeeeeeeecccccceEEEEeccccccccc
Confidence 999999988755411 11000 00000 0011111122233344443331 33332211110000000
Q ss_pred ----------------------------------------------------------cCC--cccCCCCceeeeccEEE
Q 013810 156 ----------------------------------------------------------TDE--LRTLEPWKFKISYDKLV 175 (436)
Q Consensus 156 ----------------------------------------------------------~~g--~~~~~~~~~~~~~d~lV 175 (436)
..+ ....++++.+++...+|
T Consensus 226 CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaII 305 (622)
T COG1148 226 CTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAII 305 (622)
T ss_pred ccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEE
Confidence 000 00112234478899999
Q ss_pred EeCCCCCCCCCCC-----CCccccccccChHHHHHHHHHHHHhccccCCCC----CChhhhcccCcEEEE---CCCh---
Q 013810 176 IALGAEASTFGIH-----GVKENATFLREVHHAQEIRRKLLLNLMLSDVPG----ISEEEKSRLLHCVVV---GGGP--- 240 (436)
Q Consensus 176 iAtG~~~~~~~i~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~vvVi---G~G~--- 240 (436)
+|||-.++.+.-. |.-+++++. .++.+.+ ...-|. +.+.+.+.+++|+.| |+-+
T Consensus 306 vAtGy~~~Da~~k~EyGYG~~~nVIT~------lElErml-----~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 306 VATGYKPFDATRKEEYGYGKYPNVITN------LELERML-----NPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEccccccCcchhhhcCCCCCcchhhH------HHHHHHh-----ccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 9999987655322 112334433 2222222 111111 233344666788776 5433
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe---CC
Q 013810 241 -----TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD---SQ 312 (436)
Q Consensus 241 -----~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~---~~ 312 (436)
+-+-++..|.. +..++++++. .+|+++..+- +.++...-++..+.-.+.||+++.+++.+|. ++
T Consensus 375 ~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDi--RafG~~yEefY~~~Q~~~gV~fIRGrvaei~e~p~~ 446 (622)
T COG1148 375 GNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDI--RAFGKDYEEFYVRSQEDYGVRFIRGRVAEIAEFPKK 446 (622)
T ss_pred CChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEe--eccCccHHHHHHhhhhhhchhhhcCChHHheeCCCC
Confidence 22333333322 2344555554 8899888752 2233333344444445789999999765553 33
Q ss_pred e--EEEcC---C--cEEecceEEEecCCCCc----hhcccCCCCCCCCCcEEeC-CCCCC--CCCCCEEEeccccccccC
Q 013810 313 K--LILND---G--TEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGGRIGID-EWLRV--PSVQDVFAVGDCSGYLES 378 (436)
Q Consensus 313 ~--v~~~~---g--~~i~~D~vi~a~G~~p~----~~~~~~~l~~~~~G~i~vd-~~~~~--t~~~~Vya~GD~~~~~~~ 378 (436)
. |..+| | .++++|+|++++|+.|. .+.+.+||+.+++||+... +.++. ++.++||.+|-|.+
T Consensus 447 ~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg---- 522 (622)
T COG1148 447 KLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG---- 522 (622)
T ss_pred eeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC----
Confidence 3 33333 2 46899999999999996 2677889999999998864 66653 67899999999988
Q ss_pred CCCccCCccHHHHHHHHHHHHhhhhhhcCCcee
Q 013810 379 TGKTVLPALAQVSYEQLHLFQKPSFLLARNWCW 411 (436)
Q Consensus 379 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 411 (436)
|+-+..++.||..||.........-.|
T Consensus 523 ------PkdI~~siaqa~aAA~kA~~~l~~g~~ 549 (622)
T COG1148 523 ------PKDIADSIAQAKAAAAKAAQLLGRGEV 549 (622)
T ss_pred ------CccHHHHHHHhHHHHHHHHHHhhcCce
Confidence 899999999999998777655443333
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-23 Score=182.73 Aligned_cols=188 Identities=28% Similarity=0.368 Sum_probs=126.0
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecc-hhhh-hhcCcccccccccchh--hcchhhhcCCCcEE-EEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LLAS-TCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (436)
|||||||||||++||.+|++.+.+++|||+.+...+.. .+.. ................ .+... ....++.+ +..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQ-LKNRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHH-HHHHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccc-cccceEEEeecc
Confidence 69999999999999999999999999999887544421 1111 1100000000000000 11111 12356777 456
Q ss_pred EeEeEeCCCCEE-----EEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHh
Q 013810 139 HCAGIDTDNHVV-----HCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 139 ~v~~id~~~~~v-----~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
++..++...+.+ .......+. ..++.||+||||||+.|+.|++||. +.........++..+...+
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~--- 149 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGD------GREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELL--- 149 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTT------EEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHS---
T ss_pred ccccccccccccccCcccceeeccCC------ceEecCCeeeecCccccceeecCCC-ccccccccccccccccccc---
Confidence 889999887743 221111221 2289999999999999999999997 3444556677777766553
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
...++|+|||
T Consensus 150 --------------~~~~~v~VvG-------------------------------------------------------- 159 (201)
T PF07992_consen 150 --------------ESPKRVAVVG-------------------------------------------------------- 159 (201)
T ss_dssp --------------STTSEEEEES--------------------------------------------------------
T ss_pred --------------cccccccccc--------------------------------------------------------
Confidence 1223888888
Q ss_pred HHhcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCchhc-ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccc
Q 013810 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV-KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~-~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~ 372 (436)
.+++ +..+++++++|++.||+++| |+.|||||+|||
T Consensus 160 ------------------------------------------~~~l~~~~~~~~~~~g~i~vd~~~~-t~~~~Iya~GD~ 196 (201)
T PF07992_consen 160 ------------------------------------------TEFLAEKLGVELDENGFIKVDENLQ-TSVPGIYAAGDC 196 (201)
T ss_dssp ------------------------------------------TTTSTHHTTSTBTTTSSBEEBTTSB-BSSTTEEE-GGG
T ss_pred ------------------------------------------ccccccccccccccccccccccccc-cccccccccccc
Confidence 4344 78899999999999999999 799999999999
Q ss_pred ccc
Q 013810 373 SGY 375 (436)
Q Consensus 373 ~~~ 375 (436)
++.
T Consensus 197 a~~ 199 (201)
T PF07992_consen 197 AGI 199 (201)
T ss_dssp BEE
T ss_pred ccc
Confidence 985
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=162.26 Aligned_cols=255 Identities=20% Similarity=0.323 Sum_probs=164.5
Q ss_pred cEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcch--hhhcCCCc---EEE
Q 013810 64 RVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQP--AISREPGS---YFF 136 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~ 136 (436)
+.+|||||.||.+||..|+. ...+|+|+..++..--...+ ......+..+.. +-....+- .++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~----------~~i~~ylekfdv~eq~~~elg~~f~~~~ 70 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNY----------QKIGQYLEKFDVKEQNCHELGPDFRRFL 70 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhH----------HHHHHHHHhcCccccchhhhcccHHHHH
Confidence 36899999999999999986 45679999876542111000 000000110000 00000111 222
Q ss_pred EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccc
Q 013810 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
..|..++..++.+.++ +|. .+.|++|++|||++|..- ..|.+..++..++.+.+..++.++
T Consensus 71 -~~v~~~~s~ehci~t~---~g~--------~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl------ 131 (334)
T KOG2755|consen 71 -NDVVTWDSSEHCIHTQ---NGE--------KLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKL------ 131 (334)
T ss_pred -HhhhhhccccceEEec---CCc--------eeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHH------
Confidence 2377788888888776 676 899999999999998753 233456778888888898888887
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-CcccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-SSFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-~~~~~~~~~~~~~~l 294 (436)
.+.|.|.|+|.|-++.|++.++.. .+|++....+ +- .-++|.+.+.+...+
T Consensus 132 -----------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l 184 (334)
T KOG2755|consen 132 -----------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINL 184 (334)
T ss_pred -----------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhh
Confidence 556799999999999999999964 6777766643 21 224555555554444
Q ss_pred HhcC------------CEEEe------------------------------------cceEEEeC----CeEEEc---CC
Q 013810 295 SKSG------------VRLVR------------------------------------GIVKDVDS----QKLILN---DG 319 (436)
Q Consensus 295 ~~~g------------V~i~~------------------------------------~~v~~i~~----~~v~~~---~g 319 (436)
...+ ++.+. +.+..+.. ..+... ++
T Consensus 185 ~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~ 264 (334)
T KOG2755|consen 185 RADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKM 264 (334)
T ss_pred hcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhccccccccccc
Confidence 1100 00000 00000000 001110 11
Q ss_pred --cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 320 --TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 320 --~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
..+.||.+++++|..|| +++-...+...++|.+.||..|+ |+.|+|||+||++..
T Consensus 265 ~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~-tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 265 ADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAME-TSLPDVFAAGDVCTT 322 (334)
T ss_pred ccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhcc-ccccceeeecceecc
Confidence 25789999999999999 66655567777888999999999 999999999999884
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-19 Score=172.92 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=112.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcceecc---hhhhhhcC----------ccc-----ccccccch
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTP---LLASTCVG----------TLE-----FRSVAEPI 120 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~~~~---~~~~~~~~----------~~~-----~~~~~~~~ 120 (436)
+.+++|+|||||++||++|..|++.|.+ ++|+|++...+... .+.+..+. .+. +.... ++
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~-~~ 84 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA-EI 84 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc-cH
Confidence 4568999999999999999999999998 99999997543221 11111111 000 00000 12
Q ss_pred hhcchhhhcC----CCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCCCc--
Q 013810 121 ARIQPAISRE----PGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVK-- 191 (436)
Q Consensus 121 ~~~~~~~~~~----~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g~~-- 191 (436)
.++.....+. ..+.+... ++...+.+.+.+.+... ++.+ .++.+|+||+|||. .|+.|.|+|.+
T Consensus 85 ~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~-~~~~------~~~~a~~vV~ATG~~~~P~iP~~~G~~~f 157 (443)
T COG2072 85 KDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS-DGGT------GELTADFVVVATGHLSEPYIPDFAGLDEF 157 (443)
T ss_pred HHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc-CCCe------eeEecCEEEEeecCCCCCCCCCCCCccCC
Confidence 2222222222 23333322 33444444556666543 3331 02679999999996 69999999986
Q ss_pred -cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEE
Q 013810 192 -ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV 270 (436)
Q Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V 270 (436)
..+++..++.+...+ ++|+|+|||+|.||+++|.+|++.+ .+|
T Consensus 158 ~g~~~HS~~~~~~~~~----------------------~GKrV~VIG~GaSA~di~~~l~~~g--------------a~v 201 (443)
T COG2072 158 KGRILHSADWPNPEDL----------------------RGKRVLVIGAGASAVDIAPELAEVG--------------ASV 201 (443)
T ss_pred CceEEchhcCCCcccc----------------------CCCeEEEECCCccHHHHHHHHHhcC--------------Cee
Confidence 345566555554443 3459999999999999999999876 899
Q ss_pred EEEeCCC
Q 013810 271 TLIEANE 277 (436)
Q Consensus 271 ~lv~~~~ 277 (436)
+++.|++
T Consensus 202 t~~qRs~ 208 (443)
T COG2072 202 TLSQRSP 208 (443)
T ss_pred EEEecCC
Confidence 9999964
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=171.73 Aligned_cols=232 Identities=15% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh--------h-----------hhcC---cccccc---
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVG---TLEFRS--- 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~--------~-----------~~~~---~~~~~~--- 115 (436)
..++|+|||||||||.+|+.|.+.|++++++|+.+.++...... . .+.+ .+...+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35899999999999999999999999999999998764321111 0 0111 111111
Q ss_pred ---cccchhhcchhhhcCCCc---EEEEeEeEeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCC--CCCCC
Q 013810 116 ---VAEPIARIQPAISREPGS---YFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTFG 186 (436)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~---~~~~~~v~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~--~~~~~ 186 (436)
....+.+++..+++..++ .....+|..++... +.+.+....+++. ..+.-||.|++|||.. |+.|.
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~-----~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ-----IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc-----eeEEEeeEEEEcccCcCCCCCCc
Confidence 011334444455555553 22334677777766 5666654333321 1267799999999986 88888
Q ss_pred CCCC--c---cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhh
Q 013810 187 IHGV--K---ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRY 261 (436)
Q Consensus 187 i~g~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~ 261 (436)
++|. + ...++..++..... ..+++|+|||+|+||.|++.+++..+
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~----------------------f~~k~VlVIG~g~SG~DIs~d~~~~a-------- 209 (448)
T KOG1399|consen 160 IPGPGIESFKGKIIHSHDYKSPEK----------------------FRDKVVLVVGCGNSGMDISLDLLRVA-------- 209 (448)
T ss_pred CCCCchhhcCCcceehhhccCccc----------------------ccCceEEEECCCccHHHHHHHHHHhc--------
Confidence 8873 2 34556555543333 23359999999999999999998876
Q ss_pred cCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeCCeE-EEcCCcEEecceEEEecCCCCc-hhc
Q 013810 262 SHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGPS-TLV 339 (436)
Q Consensus 262 ~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v-~~~~g~~i~~D~vi~a~G~~p~-~~~ 339 (436)
++|++..+.......... ....++..+.. |+.+++++. .+.++....+|.+|+|+|+.-. +++
T Consensus 210 ------k~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl 274 (448)
T KOG1399|consen 210 ------KEVHLSVVSPKVHVEPPE--------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFL 274 (448)
T ss_pred ------cCcceeeecccccccccc--------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEeeccee
Confidence 677776531000000000 00113333333 777777774 4456677899999999999876 555
Q ss_pred ccC
Q 013810 340 KSL 342 (436)
Q Consensus 340 ~~~ 342 (436)
...
T Consensus 275 ~~~ 277 (448)
T KOG1399|consen 275 ETL 277 (448)
T ss_pred ccC
Confidence 544
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-18 Score=155.59 Aligned_cols=302 Identities=18% Similarity=0.145 Sum_probs=166.4
Q ss_pred CCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
.++|+|||+||||+.+|..|.+ .+++|+|+|+.+..... ..++++...+........+.. .++.....|+.+-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL-vRyGVAPDHpEvKnvintFt~----~aE~~rfsf~gNv 94 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL-VRYGVAPDHPEVKNVINTFTK----TAEHERFSFFGNV 94 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce-eeeccCCCCcchhhHHHHHHH----HhhccceEEEecc
Confidence 4689999999999999999976 46899999998764332 223444444444333222222 2334445554431
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhcccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
-. .+.+.+..+ +-.||++|||+|+. ++.++|||.+ .++++.+.+ ..+.+-+ ....
T Consensus 95 ~v-----G~dvsl~eL------------~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Saref---v~Wyng~---P~~~ 151 (468)
T KOG1800|consen 95 KV-----GRDVSLKEL------------TDNYDAVVLAYGADGDRRLDIPGEELSGVISAREF---VGWYNGL---PENQ 151 (468)
T ss_pred ee-----cccccHHHH------------hhcccEEEEEecCCCCcccCCCCcccccceehhhh---hhhccCC---Cccc
Confidence 11 112222211 44699999999995 8889999986 455543322 2222211 1111
Q ss_pred -CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHH--------hhhcCCCCccEEEEEeCCCCC-Ccc-----
Q 013810 218 -DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR--------QRYSHVKDYIHVTLIEANEIL-SSF----- 282 (436)
Q Consensus 218 -~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~--------~~~~~~~~~~~V~lv~~~~~l-~~~----- 282 (436)
..|+ -...+|+|||.|++++++|..|.....+..+ -..-....-++|+|+-|..++ ..|
T Consensus 152 ~le~d------ls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKEL 225 (468)
T KOG1800|consen 152 NLEPD------LSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKEL 225 (468)
T ss_pred ccCcc------cccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHH
Confidence 1122 2245899999999999999998653222111 001111234688888874211 111
Q ss_pred ----------------------------c-----HHHHHHHHHHHHhc---------CCE------------EEec--ce
Q 013810 283 ----------------------------D-----DRLRHYATTQLSKS---------GVR------------LVRG--IV 306 (436)
Q Consensus 283 ----------------------------~-----~~~~~~~~~~l~~~---------gV~------------i~~~--~v 306 (436)
+ .++.+.+.+.+.++ +.+ |..+ .|
T Consensus 226 RE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v 305 (468)
T KOG1800|consen 226 REVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGV 305 (468)
T ss_pred HHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccc
Confidence 0 11222222222220 111 0000 00
Q ss_pred EEEe--CC------eEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCC---CCCCCEEEecccccc
Q 013810 307 KDVD--SQ------KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGY 375 (436)
Q Consensus 307 ~~i~--~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~---t~~~~Vya~GD~~~~ 375 (436)
..+. .+ .+.+.+-++++|++++.++|++..++.. ++..|..-.+.-|.+.++ --.|++|++|-|..+
T Consensus 306 ~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~--gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~G 383 (468)
T KOG1800|consen 306 SGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS--GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHG 383 (468)
T ss_pred cceEEEeeeehhhcccccCceEeeccceeEeeeeecccccCC--CCCcccccCcccCCCceEEeeccCCceEEEeeeccC
Confidence 0000 00 1111222479999999999998765433 333333222333333332 135999999999997
Q ss_pred ccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 376 LESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
| ...+..+++++..+|..|..+..
T Consensus 384 P--------~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 384 P--------TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred C--------cceeeehhhhHHHHHHHHHHHHH
Confidence 5 45677889999999998876654
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-19 Score=158.78 Aligned_cols=167 Identities=21% Similarity=0.223 Sum_probs=97.0
Q ss_pred EEECCchHHHHHHHhcccCCCe-EEEEcCCCcceec------------chhhhhhcCcccc----------------ccc
Q 013810 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFT------------PLLASTCVGTLEF----------------RSV 116 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~~~------------~~~~~~~~~~~~~----------------~~~ 116 (436)
+|||||||||++|.+|.+.|.+ ++|||+++..+.. |.......+..+. ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 7999999999999999999999 9999998654221 0000000000000 001
Q ss_pred ccchhhcchhhhcCCCcEEEE-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCC-Ccc
Q 013810 117 AEPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (436)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g-~~~ 192 (436)
...+.++...+.+..++.+.. .+|++++.+.+.+.+.. .++. .+.+|+||+|||. .|+.|++|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~-~~~~--------~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTT-RDGR--------TIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEE-TTS---------EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEE-Eecc--------eeeeeeEEEeeeccCCCCcccccccccc
Confidence 112333444445555666544 58888887776666654 3444 7899999999996 788899999 444
Q ss_pred ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE
Q 013810 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (436)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~l 272 (436)
..++..++.+... -++++|+|||+|.+|+|+|..|++.+ .+|++
T Consensus 152 ~~~h~~~~~~~~~----------------------~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDPED----------------------FKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STTGG----------------------CTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCChhh----------------------cCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 4455444332221 23369999999999999999998765 89999
Q ss_pred EeCCC
Q 013810 273 IEANE 277 (436)
Q Consensus 273 v~~~~ 277 (436)
+.|++
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99974
|
... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-16 Score=142.89 Aligned_cols=296 Identities=16% Similarity=0.148 Sum_probs=176.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcceecchh--hhhhcCccccccc--------------------
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRSV-------------------- 116 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~-------------------- 116 (436)
+...|++.||-||+-|+.|..|.+.+ .++..+|+++.+-|+|.. ++.-...+...|+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 34589999999999999999998854 789999999999888642 2211111111111
Q ss_pred --------------ccchhhcchhhhcCCCcEEEEeEeE---eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 117 --------------AEPIARIQPAISREPGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 117 --------------~~~~~~~~~~~~~~~~~~~~~~~v~---~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
..++.++..+.+..........+|+ .++.+..........++. .+.++.|||++|
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~--------~y~ar~lVlg~G 154 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGT--------VYRARNLVLGVG 154 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCc--------EEEeeeEEEccC
Confidence 1122333222222221112334666 455444333222223444 789999999999
Q ss_pred CCCCCCC-CCCCc-cccccccChHH-HHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 180 AEASTFG-IHGVK-ENATFLREVHH-AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 180 ~~~~~~~-i~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
.+|..|+ +.... +.+++..++.. -.++. ..++|+|||+|-+|.|+-..|..-.
T Consensus 155 ~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~---------------------~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 155 TQPYIPPCFRSLIGERVFHSSEYLERHPELL---------------------QKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCcCCChHHhCcCccceeehHHHHHhhHHhh---------------------cCceEEEEcCCccHHHHHHHHHhCC---
Confidence 9999985 33332 46676655432 11111 1125999999999999998886422
Q ss_pred HHhhhcCCCCccEEEEEeCCC-CCCc---------ccHH-----------HHHHH-------------------HHHHH-
Q 013810 257 VRQRYSHVKDYIHVTLIEANE-ILSS---------FDDR-----------LRHYA-------------------TTQLS- 295 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~-~l~~---------~~~~-----------~~~~~-------------------~~~l~- 295 (436)
.....++.++.|+. .+|. |.|+ .++.+ -+.|.
T Consensus 211 -------~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -------PPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -------CCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 11234688888853 3221 1222 22111 11111
Q ss_pred ------hcCCEEEecc-eEEEeCCe---EEEc-------CCcEEecceEEEecCCCCc--hhcccCC--CCCCCCCcEEe
Q 013810 296 ------KSGVRLVRGI-VKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGGRIGI 354 (436)
Q Consensus 296 ------~~gV~i~~~~-v~~i~~~~---v~~~-------~g~~i~~D~vi~a~G~~p~--~~~~~~~--l~~~~~G~i~v 354 (436)
+..|.++.++ |..++..+ +.+. +.+++++|.||+|||++.. +|+..+. +..|++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 2345666663 77776432 4431 2347899999999999865 4666554 66788999999
Q ss_pred CCCCCCCCC----CCEEEeccccccccCCCCccCCccHHHHHHHHHHH
Q 013810 355 DEWLRVPSV----QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLF 398 (436)
Q Consensus 355 d~~~~~t~~----~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~a 398 (436)
+..+++... -.||+-|-+...+... -|.+...|.+.+.++
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHGig----~pdLsl~a~Raa~I~ 407 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHGIG----APDLSLGAWRAAVIL 407 (436)
T ss_pred cCceeeecCCCCcceEEEecccccccccC----CccchHHHHHHHHHH
Confidence 988665322 2599999887643321 155666677766654
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=155.93 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=102.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcceecchh--hhhhcCccccccc-----------------------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRSV----------------------- 116 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~----------------------- 116 (436)
+|+++||.||++|+.|..|.+.+ .++..+|+++.+.|+|.+ .+.-......+++
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~ 82 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLY 82 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HH
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChh
Confidence 68999999999999999998865 899999999999887643 2222221111111
Q ss_pred -----------ccchhhcchhhhcCCCc-EEEEeEeEeEeCCCC----EEEEEEe-cCCcccCCCCceeeeccEEEEeCC
Q 013810 117 -----------AEPIARIQPAISREPGS-YFFLSHCAGIDTDNH----VVHCETV-TDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 117 -----------~~~~~~~~~~~~~~~~~-~~~~~~v~~id~~~~----~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
...+.++..++...... ..+..+|+.|++... .+.+.+. .+|. ...+.++.||||||
T Consensus 83 ~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~------~~~~~ar~vVla~G 156 (341)
T PF13434_consen 83 EFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGD------GETYRARNVVLATG 156 (341)
T ss_dssp HHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-------EEEEEESEEEE---
T ss_pred hhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCC------eeEEEeCeEEECcC
Confidence 11344444555555444 445568888886543 2444431 2232 12889999999999
Q ss_pred CCCCCCCCCC-C--ccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 180 AEASTFGIHG-V--KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 180 ~~~~~~~i~g-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
..|..|..-. . .+.+++..++....+-. ...++|+|||||.+|.|++..|.+.+
T Consensus 157 ~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~--------------------~~~~~V~VVGgGQSAAEi~~~L~~~~--- 213 (341)
T PF13434_consen 157 GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQS--------------------LAGKRVAVVGGGQSAAEIFLDLLRRG--- 213 (341)
T ss_dssp -EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH----
T ss_pred CCCCCCcchhhcCCCCCEEEehHhhhccccc--------------------cCCCeEEEECCcHhHHHHHHHHHhCC---
Confidence 9888875332 2 25677776665433210 23359999999999999999998765
Q ss_pred HHhhhcCCCCccEEEEEeCCC
Q 013810 257 VRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+..+|+++.|+.
T Consensus 214 ---------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ---------PEAKVTWISRSP 225 (341)
T ss_dssp ---------TTEEEEEEESSS
T ss_pred ---------CCcEEEEEECCC
Confidence 237999999974
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=151.70 Aligned_cols=39 Identities=13% Similarity=-0.024 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcc-cCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~-~~g~~v~lie~~~~~~~ 99 (436)
..++|+|||||||||+||.+|. +.|++|+|+|+.+.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG 77 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 4578999999999999999864 67999999999987654
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=136.00 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=104.5
Q ss_pred EEECCChHHHHHH-HHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe
Q 013810 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 234 vViG~G~~g~e~A-~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~ 310 (436)
+|++.+.+|+|.+ ..++++.. .-+.+|+++... +.++.. ++.+.+.+.+++.|++++.+. |.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~----------~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEE----------ALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHH----------HHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7788999999999 66654310 113899999874 555553 788888999999999999984 77775
Q ss_pred --CCeEE---EcCCc--EEecceEEEecCCCCch-hcc--------cCCCCC---------------CCC----CcEEeC
Q 013810 311 --SQKLI---LNDGT--EVPYGLLVWSTGVGPST-LVK--------SLDLPK---------------SPG----GRIGID 355 (436)
Q Consensus 311 --~~~v~---~~~g~--~i~~D~vi~a~G~~p~~-~~~--------~~~l~~---------------~~~----G~i~vd 355 (436)
++++. ..+|+ .+++|.||+|+|..+.. +.. -++|++ .+. =.|.+|
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 33332 33443 58999999999987652 310 012222 000 015667
Q ss_pred CCCCC------CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 356 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 356 ~~~~~------t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+.|+. +..+||||+|++.++++.--+ -.-...|+..|..||++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHHHHHHHHHHHHHh
Confidence 66663 458999999999998653110 112347889999999988754
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-10 Score=106.18 Aligned_cols=173 Identities=17% Similarity=0.132 Sum_probs=96.6
Q ss_pred CcEEEECCchHHHHHHHhcccC---CCeEEEEcCCCcce----ecchhhh----hhcCc-----cc----ccc-------
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMV----FTPLLAS----TCVGT-----LE----FRS------- 115 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~~~~----~~~~~~~----~~~~~-----~~----~~~------- 115 (436)
++|+|||||++|+.+|.+|.+. ...|.|||+.+.++ |.+..+. +..+. ++ +.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 6899999999999999999762 22399999876542 2211100 00000 00 000
Q ss_pred --------------------cccchhhcchhhhcCCC---cEEEEeEeEeEeCC-CCEEEEEEecCCcccCCCCceeeec
Q 013810 116 --------------------VAEPIARIQPAISREPG---SYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISY 171 (436)
Q Consensus 116 --------------------~~~~~~~~~~~~~~~~~---~~~~~~~v~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~ 171 (436)
+..++.+....+.+... +.++..+++++... +....+....+|. ...+
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~--------~~~a 153 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGP--------SEIA 153 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCC--------eeee
Confidence 00112222222222222 66777777777655 2223333345665 7789
Q ss_pred cEEEEeCCCCCCCCCC-----CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHH
Q 013810 172 DKLVIALGAEASTFGI-----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246 (436)
Q Consensus 172 d~lViAtG~~~~~~~i-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A 246 (436)
|-+|+|||..+-.++. +|.... +.+...+..+. .+ +...+|+|+|+|.+.++..
T Consensus 154 d~~Vlatgh~~~~~~~~~~~~~~~~~~---ia~~~~~~~ld----------~v--------~~~drVli~GsgLt~~D~v 212 (474)
T COG4529 154 DIIVLATGHSAPPADPAARDLKGSPRL---IADPYPANALD----------GV--------DADDRVLIVGSGLTSIDQV 212 (474)
T ss_pred eEEEEeccCCCCCcchhhhccCCCcce---eccccCCcccc----------cc--------cCCCceEEecCCchhHHHH
Confidence 9999999986544332 222111 11111111111 11 2223799999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
..|.+.+ ...+||++.|.
T Consensus 213 ~~l~~~g------------h~g~It~iSRr 230 (474)
T COG4529 213 LVLRRRG------------HKGPITAISRR 230 (474)
T ss_pred HHHhccC------------CccceEEEecc
Confidence 9998755 33688888884
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-11 Score=87.99 Aligned_cols=74 Identities=34% Similarity=0.566 Sum_probs=64.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.+++.||+++++. +.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999877 999999995 56788999999999999999999999995 8888
Q ss_pred eC--Ce--EEEcCC
Q 013810 310 DS--QK--LILNDG 319 (436)
Q Consensus 310 ~~--~~--v~~~~g 319 (436)
+. ++ |+++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 64 33 666665
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-10 Score=106.83 Aligned_cols=112 Identities=16% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh--------------hhhhcC-----------------
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--------------ASTCVG----------------- 109 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~--------------~~~~~~----------------- 109 (436)
+.++|+|||||||||.||..+++.|.+|+|||+.+.+.-.-++ ...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 4589999999999999999999999999999987543110000 000000
Q ss_pred --------------------ccccc-ccccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCce
Q 013810 110 --------------------TLEFR-SVAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKF 167 (436)
Q Consensus 110 --------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~ 167 (436)
..... +-..++-+.+..-.+..++.++.. +|.+++.++..+.+.+ .+|.
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t-~~g~-------- 152 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDT-SSGE-------- 152 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEc-CCCC--------
Confidence 00000 111122222222344567777765 8999998876665543 3554
Q ss_pred eeeccEEEEeCCCC
Q 013810 168 KISYDKLVIALGAE 181 (436)
Q Consensus 168 ~~~~d~lViAtG~~ 181 (436)
++.+|.+|||||..
T Consensus 153 ~i~~d~lilAtGG~ 166 (408)
T COG2081 153 TVKCDSLILATGGK 166 (408)
T ss_pred EEEccEEEEecCCc
Confidence 79999999999954
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=111.39 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=97.7
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcce----ecch------hhh---------------hhcCc-----
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMV----FTPL------LAS---------------TCVGT----- 110 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~----~~~~------~~~---------------~~~~~----- 110 (436)
++|+||||||+|+++|..|.+. ..+|+|||++..++ |.+. +.. ++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 6899999999999999999764 35899999975432 2221 000 00000
Q ss_pred --------------cccc-ccccchhhcchhhh---cCCC--cEEEE-eEeEeEeCCCCEEEEEEecCCcccCCCCceee
Q 013810 111 --------------LEFR-SVAEPIARIQPAIS---REPG--SYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKI 169 (436)
Q Consensus 111 --------------~~~~-~~~~~~~~~~~~~~---~~~~--~~~~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~ 169 (436)
...+ ....++......+. ...+ +.++. .+|++++.....+.+....++. .+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~--------~i 153 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLP--------SE 153 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCe--------EE
Confidence 0000 00001111111111 1222 45543 4899998777766665433334 78
Q ss_pred eccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHH
Q 013810 170 SYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (436)
Q Consensus 170 ~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l 249 (436)
.+|+||+|||..+..+ .++. . .+....+ .... ....| ..+|+|+|.|.++++++..|
T Consensus 154 ~aD~VVLAtGh~~p~~-~~~~-~-~yi~~pw-~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~L 210 (534)
T PRK09897 154 TFDLAVIATGHVWPDE-EEAT-R-TYFPSPW-SGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMAV 210 (534)
T ss_pred EcCEEEECCCCCCCCC-Chhh-c-cccCCCC-cchh----------hcCCC---------CCeEEEECCCHHHHHHHHHH
Confidence 9999999999753211 1111 1 1111111 1100 00111 24899999999999999999
Q ss_pred HHHHHHHHH--------hhhcCCCCccEEEEEeCC
Q 013810 250 SDFIMRDVR--------QRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 250 ~~~~~~~~~--------~~~~~~~~~~~V~lv~~~ 276 (436)
...+. .+. -.|......-+|+++.|.
T Consensus 211 t~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRr 244 (534)
T PRK09897 211 AIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRT 244 (534)
T ss_pred HhcCC-ceeccCCCcceeeecCCCCCceEEEEeCC
Confidence 85421 111 111112244688888875
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-10 Score=107.39 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
|||+|||||||||.||+.|++.|.+|+|+|+++..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~ 35 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV 35 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 68999999999999999999999999999998654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.4e-09 Score=102.58 Aligned_cols=115 Identities=15% Similarity=0.202 Sum_probs=71.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---hh--cCc-------cc-----c-----ccccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TC--VGT-------LE-----F-----RSVAE 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---~~--~~~-------~~-----~-----~~~~~ 118 (436)
..+||+||||||||+++|..|++.|++|+|||+.+...+...+.. .. .+. .. . .....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~ 106 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR 106 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence 458999999999999999999999999999999764332110000 00 000 00 0 00000
Q ss_pred --------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 119 --------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 119 --------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.+.+.........++.++.++|++++.....+.+.. .+|. ++.+|+||.|+|.....
T Consensus 107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~-~dG~--------~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 107 PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVC-DDGV--------KIQASLVLDATGFSRCL 171 (447)
T ss_pred cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEE-CCCC--------EEEcCEEEECcCCCcCc
Confidence 111111111234578888889999987666555443 3555 79999999999987643
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=103.40 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
+++||+||||||||++||+.|++.|++|+|+|+.+...+.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k 41 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAK 41 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 4589999999999999999999999999999998776554
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-07 Score=91.64 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCC--cEEecceEEEecCCC-CchhcccC--------CCC
Q 013810 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDG--TEVPYGLLVWSTGVG-PSTLVKSL--------DLP 345 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g--~~i~~D~vi~a~G~~-p~~~~~~~--------~l~ 345 (436)
+..+.+.+.+.+++.|++++.+ +|.+++ +++ |.+.++ .++.+|.+|+|+|.. ...+.+.+ +++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~ 341 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLD 341 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCC
Confidence 3577788889999999999998 577764 332 444555 479999999999988 55443322 333
Q ss_pred C----CC---------------CCcEEeCCCCCC----CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhh
Q 013810 346 K----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPS 402 (436)
Q Consensus 346 ~----~~---------------~G~i~vd~~~~~----t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 402 (436)
+ +. .=.|.+|+.+|. ...+|+||+|-+.++.+.--. -.-...|+..|-.||++|
T Consensus 342 v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 342 VLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---GCGSGVAVSTALHAAEQI 418 (419)
T ss_pred cCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---CCCchhHHHHHHHHHHhh
Confidence 3 10 112778999883 138999999999987663111 112347899999999887
Q ss_pred h
Q 013810 403 F 403 (436)
Q Consensus 403 ~ 403 (436)
.
T Consensus 419 ~ 419 (419)
T TIGR03378 419 I 419 (419)
T ss_pred C
Confidence 3
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.3e-09 Score=97.28 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+|||||+||+++|+.|++.|++|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 58999999999999999999999999999998654
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=98.88 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=33.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+++||+||||||||++||..|++.|++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 456899999999999999999999999999999874
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=101.38 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+||||||||++||..|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 3589999999999999999999999999999987654
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=100.16 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+||||||||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999988654
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.2e-08 Score=98.08 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=39.0
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |++||+||+|+|+..-. .|. .........|.-.|+.|++++...
T Consensus 333 ~GGi~vd~~~~-t~I~GLyAaGE~a~~g~-hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 333 CGGISVDDHGR-TTVPGLYAIGEVACTGL-HGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred cCCEEECCCCc-ccCCCEEECcccccccc-CcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 46799999999 89999999999974211 111 111334567888889998888643
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=96.71 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=67.0
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEc-CCCcceec---chhhhhhcC--------------------c---------
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVS-PRNHMVFT---PLLASTCVG--------------------T--------- 110 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie-~~~~~~~~---~~~~~~~~~--------------------~--------- 110 (436)
||+|||||.||++||+.+++.|.+|+|+. +.+.+... |.+.+...+ .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 79999999999999999999999999993 33322211 221111100 0
Q ss_pred --cccccc--cc---chh-hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 111 --LEFRSV--AE---PIA-RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 111 --~~~~~~--~~---~~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
+..... .. .+. .+...+...+++.+++++|+.+..+++.+.-....+|. .+.+|.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~--------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGE--------EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSE--------EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCC--------EEecCEEEEeccc
Confidence 000000 00 111 11222445588999999999999888877655556776 8999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=99.73 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=69.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC-cceec---chhhhhh----------cCcc----------ccc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLASTC----------VGTL----------EFR-- 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~-~~~~~---~~~~~~~----------~~~~----------~~~-- 114 (436)
.++||+|||||+||++||..+++.|.+|+|||++. .+++. |...+.. .|.. .+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 35899999999999999999999999999999873 32221 1111111 0000 000
Q ss_pred ------cccc-----c---h-hhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 115 ------SVAE-----P---I-ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 115 ------~~~~-----~---~-~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.... + + ..+...+....++.++.++|+.+..+++.+.-....+|. .+.++.||+|||
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~--------~I~Ak~VIlATG 154 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGL--------EFRAKAVVLTTG 154 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCC--------EEECCEEEEeeC
Confidence 0000 0 0 111111223457888888998887666655422334565 899999999999
Q ss_pred CC
Q 013810 180 AE 181 (436)
Q Consensus 180 ~~ 181 (436)
..
T Consensus 155 TF 156 (618)
T PRK05192 155 TF 156 (618)
T ss_pred cc
Confidence 74
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.9e-07 Score=92.14 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=40.3
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.||.+.| |+.|++||+|+|++... .|. +.-......|+-.|++|++++..+.
T Consensus 358 ~GGi~vd~~~~-t~i~GLyAaGe~~~~g~-hGanrlggnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 358 MGGIETDQNCE-TRIKGLFAVGECSSVGL-HGANRLGSNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CCCEEECCCCc-cccCCEEeccccccccc-CCCCCcchhHHHHHHHHHHHHHHHHHHhh
Confidence 56799999999 99999999999975211 121 1112355678888999999887653
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-08 Score=96.87 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=67.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce-----ecchh-----hhhhcCc--------ccccc--ccc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV-----FTPLL-----ASTCVGT--------LEFRS--VAE-- 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~-----~~~~~-----~~~~~~~--------~~~~~--~~~-- 118 (436)
..+||+||||||||+++|..|++.|++|+|||+...+. |...+ ....... ..... ...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Y 186 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAY 186 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcc
Confidence 35899999999999999999999999999999753221 00000 0000000 00000 000
Q ss_pred ------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 119 ------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 119 ------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
.+.+.........++.++..+|+.+..+.+.+.+....+|. ++.++.||+|+|...
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~--------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGR--------VIPCRLATVASGAAS 248 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCc--------EEECCEEEECCCcCh
Confidence 01111111123457888888998887655444332223555 799999999999865
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-08 Score=96.36 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 4458999999999999999999999999999998753
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.4e-08 Score=95.84 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+||+||||||||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-07 Score=94.80 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+|.|||+||+.+++ |.+|+||||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4799999999999999999987 899999998764
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-08 Score=93.59 Aligned_cols=56 Identities=13% Similarity=-0.005 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
-|.|.||.+.| |+.|++||||.|+..--+.-.+-..++...++--|..+|++|...
T Consensus 341 mGGI~vD~~Gr-Tsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGR-TSIPGLYAIGEVACTGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCc-ccCcccEEeeeecccccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 36799999999 999999999999873111112222344455666677778888753
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-08 Score=89.56 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||+||||||||++||++|++.|++|+|||+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999998764
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.4e-08 Score=95.93 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=65.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh---hh---------hh----cCccccc--cc---------
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL---AS---------TC----VGTLEFR--SV--------- 116 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~---~~---------~~----~~~~~~~--~~--------- 116 (436)
||+||||||||+++|..|++.|++|+|||+++...+...+ .. .. .+..... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 6999999999999999999999999999987654321000 00 00 0000000 00
Q ss_pred ---ccchhhcchhhhcCCCcEEEEeEeEeEeCC-CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 117 ---AEPIARIQPAISREPGSYFFLSHCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 117 ---~~~~~~~~~~~~~~~~~~~~~~~v~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
...+.+.........++.++.++|..++.+ ...+.+. ..++. ++++|+||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~-~~~g~--------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVY-CAGGQ--------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEE-eCCCC--------EEEeCEEEECCCCch
Confidence 000111111112234677777788888765 4444333 23554 799999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.3e-08 Score=96.28 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+||||||||+++|..|++.|++|+|||+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 58999999999999999999999999999998764
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=88.21 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCCcEEecceEEEecCCCCchhcccCCC
Q 013810 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
+..+.+.+.+.+++.|++++.+ +|++++ +++ |.+.+|+ +.+|.||+|+|.....++..++.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHHHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccceeeeecccc
Confidence 3577788888889999999999 588886 333 6778887 99999999999876666666655
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=90.37 Aligned_cols=35 Identities=34% Similarity=0.384 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCC---CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g---~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++.| .+|+||||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 479999999999999999999988 89999998754
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-08 Score=95.23 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357899999999999999999999999999998764
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-08 Score=84.80 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC 107 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~ 107 (436)
..||+||||||+||+||++|++.|++|+|||++-+++.-.+..+..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGml 75 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGML 75 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccc
Confidence 3689999999999999999999999999999998765543333333
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-08 Score=88.23 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..+||+|||||||||+||+.|++.|++|+|||++..+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35899999999999999999999999999999987653
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=87.93 Aligned_cols=56 Identities=18% Similarity=0.088 Sum_probs=40.0
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCc-cCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT-VLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~-~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.+|.+.+ |++|++||+|+|++... .|.. .-......|+-.|++|++++..+.
T Consensus 357 ~GGi~~d~~~~-t~i~GLyAaGe~a~~G~-hGanrl~g~sl~~~~v~G~~ag~~aa~~~ 413 (580)
T TIGR01176 357 MGGIETDINCE-TRIKGLFAVGECASVGL-HGANRLGSNSLAELVVFGRRAGEAAAERA 413 (580)
T ss_pred CCCeeECcCcc-cccCCeEeeecccccCc-CCCccccchhHHHHHHHHHHHHHHHHHhh
Confidence 45699999999 99999999999974211 1111 112456678888999999887653
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=96.44 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.|||+||+.+++ |.+|+||||.+..
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~ 43 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLK 43 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCC
Confidence 35799999999999999999975 9999999987643
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=91.33 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=68.1
Q ss_pred cEEEECCchHHHHHHHhc--ccCCCeEEEEcCCCcceecch--hh----------hhhcCccc--------cc----c--
Q 013810 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPL--LA----------STCVGTLE--------FR----S-- 115 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L--~~~g~~v~lie~~~~~~~~~~--~~----------~~~~~~~~--------~~----~-- 115 (436)
||+|||||+||+++|..| ++.|.+|+|||+++...+... +. ........ .. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 799999999999999999 789999999998765422111 00 00000000 00 0
Q ss_pred c-cc---chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 116 V-AE---PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 116 ~-~~---~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
. .. .+.+.........++.++..+|++|+.....+.+. ..+|. +++++.||-|+|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~-~~~g~--------~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVV-LADGR--------TIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEE-ECCCC--------EEEeeEEEECCCcccc
Confidence 0 00 11111111112346777888999998877744443 24665 8999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=92.73 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+..+||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4457999999999999999999999999999998754
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.1e-08 Score=96.44 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 347999999999999999999999999999998754
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=92.42 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++|+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 479999999999999999999999999999988653
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=94.50 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=39.2
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |++|++||+|+|+..-. .|. +.-......|+-.|+.|++++...
T Consensus 353 ~GGi~vd~~~~-t~I~GLyAaGE~a~~g~-hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGR-TDLDGLYAIGEVSYTGL-HGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCc-cccCCEEeccccccccc-CCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 46699999999 89999999999974211 111 111245567888899999888654
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=86.53 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=73.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCcc-----cHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~-----~~~~~~~~~~~l 294 (436)
+|+|||+|+.|+++|..|++.+ .+|+|+++.+. .+.+ +.++.+.+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998765 88999997431 1222 256778888888
Q ss_pred HhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 295 ~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++.|++++..++.+++.. .+.+.+++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999998768877653 466677789999999999999886
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-08 Score=102.71 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
...||||||+|+||++||+.+++.|.+|+|+||......
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 458999999999999999999999999999999876543
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=92.75 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+||||||||++||..|++.|++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4899999999999999999999999999998743
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.1e-08 Score=97.25 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++|+||||||+||++|..|++.|++|+|||+.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999987543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=99.10 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=39.7
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+++ |++||+||+|||+... .++...|.-.|+.|+.++..+
T Consensus 361 ~GGi~vd~~~~-T~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~ 408 (897)
T PRK13800 361 ASGVWVDEHAR-TTVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGT 408 (897)
T ss_pred cceEEecCCCc-ccCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHH
Confidence 47799999999 9999999999998742 456677888899988888654
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=91.60 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++.++|+|||||+|||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3458999999999999999999999999999998764
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=85.65 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~ 97 (436)
...||+|||||+||++||+.|++. |++|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 457999999999999999999975 8999999998654
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=91.41 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999998764
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.5e-07 Score=86.07 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcE-EecceEEEecCCCCchhcccCCCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~l~~~ 347 (436)
++...+.+.+.++|++++.++ |++++. + .+.+.+|++ ++|+.||.|.|.-...+++..|++.+
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 556667777888899999995 887753 3 345567776 99999999999999888888877653
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=91.56 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3799999999999999999999999999999764
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-06 Score=85.53 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||||||+|.|||+||+.+++.| +|+||||.+..
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~ 63 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPH 63 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCC
Confidence 479999999999999999999999 99999987643
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=90.85 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999875
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-07 Score=93.64 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+||++|..|++.|.+|+|||+.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 347999999999999999999999999999998864
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-07 Score=83.32 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..|+|||+|+||++||..|+..|.+|+|+||+.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCc
Confidence 46999999999999999999999999999987543
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=92.29 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~ 96 (436)
+||+||||||||+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 78999999999999999999985 99999998754
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.6e-07 Score=90.89 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=70.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.-. . + ..+........+..++.++.+ +|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---------~-~-----~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR---------E-E-----PSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC---------C-C-----HHHHHHHHHHHHHcCCEEEcCCEE
Confidence 468999999999999999999999999999998653110 0 0 111112222234567888765 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+...+.+.. +++ ++.+|.||+|+|..|+..
T Consensus 222 ~~i~~~~~~v~v~~--~g~--------~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 222 TEVKNDGDQVLVVT--EDE--------TYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEecCCEEEEEE--CCe--------EEEcCEEEEeeCCCCCcc
Confidence 88887655555432 454 799999999999998764
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-06 Score=85.47 Aligned_cols=55 Identities=15% Similarity=0.022 Sum_probs=38.2
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.+ |++|++||+|+|+..- ..|. +.-......++-.|+.|++++...
T Consensus 341 ~GGi~vd~~~~-t~I~GLyAaGE~a~~G-~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGR-SSLPGLWAAGEVASTG-LHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCc-cccCCEEecccccccC-CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 46699999999 8999999999997310 1111 111234556778889999888654
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=94.43 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 37899999999999999999999999999998754
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=95.66 Aligned_cols=91 Identities=12% Similarity=0.090 Sum_probs=60.2
Q ss_pred cEEEECCChHHHHHHHH-------HHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEe
Q 013810 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~-------l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~ 303 (436)
.++++|++..+++++.. +.+++ .+|++.... ..+..++..+...+.+.+++.||+++.
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78999999999998764 44444 455554332 233445667778888889999999999
Q ss_pred cc-eEEEeC--C---eEEEc-CCc--EEecc-eEEEec-CCCCc
Q 013810 304 GI-VKDVDS--Q---KLILN-DGT--EVPYG-LLVWST-GVGPS 336 (436)
Q Consensus 304 ~~-v~~i~~--~---~v~~~-~g~--~i~~D-~vi~a~-G~~p~ 336 (436)
++ +.++.. + +|+.. +++ ++.++ .||+|+ |+.+|
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcC
Confidence 94 666642 2 33342 443 47785 577755 46666
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.5e-07 Score=90.51 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.++|+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 478999999999999999999999999999997
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=90.21 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 478999999999999999999999999999987643
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=5e-07 Score=89.00 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=88.89 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=87.62 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||||+++|..|++. ++|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 37999999999999999999999 99999998764
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=88.88 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccC---CCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~ 94 (436)
++++|+||||||||+++|+.|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 458999999999999999999998 9999999994
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.2e-07 Score=88.99 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+++|+||||||||+++|+.|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4579999999999999999999999999999987654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.4e-07 Score=89.59 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=70.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+.. .. + ..+.+......+..++.++.+ +|
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~---------~~-d-----~e~~~~l~~~L~~~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP---------GE-D-----EDIAHILREKLENDGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc---------cc-c-----HHHHHHHHHHHHHCCCEEEECCEE
Confidence 36899999999999999999999999999998765311 00 0 011111122233468888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+...+.+.. +++ +.++.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~~~~--~g~------~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 235 KGLNSYKKQALFEY--EGS------IQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEcCCEEEEEE--CCc------eEEEEeCEEEEecCCccCCC
Confidence 88887666555542 332 12689999999999988764
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-07 Score=89.73 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345899999999999999999999999999999875
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.9e-07 Score=87.19 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+||||||||+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35899999999999999999999999999999875
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.7e-07 Score=67.01 Aligned_cols=73 Identities=23% Similarity=0.366 Sum_probs=51.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeEe
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCAG 142 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~ 142 (436)
+|+|||||+.|+.+|..|++.|.+|+||++.+.+. +.+. ...........+..+++++.+ .+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~-------------~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGFD-------------PDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSS-------------HHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcC-------------HHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999999999999988743 1111 111222222234468998876 7788
Q ss_pred EeCCCCEEE
Q 013810 143 IDTDNHVVH 151 (436)
Q Consensus 143 id~~~~~v~ 151 (436)
++.+...+.
T Consensus 66 i~~~~~~~~ 74 (80)
T PF00070_consen 66 IEKDGDGVE 74 (80)
T ss_dssp EEEETTSEE
T ss_pred EEEeCCEEE
Confidence 877655433
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.8e-08 Score=94.38 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
||||||||+||++||+.+++.|.+|+|||+.+.++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 799999999999999999999999999999887643
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-07 Score=90.25 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+||||||||+++|+.|++.|++|+|||+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 58999999999999999999999999999987654
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=89.04 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||||||||.|||+||+.+++.|.+|+||||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999864
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.5e-07 Score=89.10 Aligned_cols=103 Identities=15% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|||+.+.+. +. . .. .+........+..++.++.+ +|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il-----~~-----~-~~----~~~~~l~~~l~~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL-----PT-----E-DA----ELSKEVARLLKKLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC-----Cc-----C-CH----HHHHHHHHHHHhcCCEEEeCcEE
Confidence 3689999999999999999999999999999876521 10 0 00 11111112234468888776 78
Q ss_pred EeEeC--CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~--~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++. +++...+ ...+|+ +.++.+|.||+|+|.+|+...
T Consensus 245 ~~i~~~~~~~~~~~-~~~~g~------~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 245 LGLTLKKDGGVLIV-AEHNGE------EKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred EEEEEecCCCEEEE-EEeCCc------eEEEEeCEEEEeeCCccCCCC
Confidence 88874 3333222 222442 126899999999999987643
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=86.53 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||+||+++|+.|++.|++|+|+|+.+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999988653
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.2e-07 Score=89.06 Aligned_cols=102 Identities=12% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- .. + ..+........+..++.++.+ +|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~~--------~-----~~~~~~~~~~l~~~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--GE--------D-----AEVSKVVAKALKKKGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--CC--------C-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 36899999999999999999999999999999865310 00 0 011111112233457888776 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+.. .++. +.++.+|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~-~~g~------~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYEN-KGGE------TETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEE-eCCc------EEEEEeCEEEEecCCcccCC
Confidence 88877666665543 2331 12789999999999998765
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=90.27 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+||++|+.|++.|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998754
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=84.81 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=32.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 68999999999999999999999999999987643
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=87.71 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
||+||||||||+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-06 Score=85.61 Aligned_cols=94 Identities=18% Similarity=0.295 Sum_probs=69.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----cccHHHH---------HHHHHHHHhc
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLR---------HYATTQLSKS 297 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----~~~~~~~---------~~~~~~l~~~ 297 (436)
++|+|||||+.|+.+|..|.+.+ ...+|+|+++.+..+ .+...+. -.-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 38999999999999999998754 346899998854221 1221110 0012346678
Q ss_pred CCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+|+++.++ |..++. ..|.+.+|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 99999985 888865 4678889999999999999999986
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=86.15 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 699999999999999999999999999999864
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=87.97 Aligned_cols=104 Identities=13% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+. +. .+ ..+........+..++.++.+ +|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~~-----~~-----~~~~~~l~~~l~~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL-----PG-----ED-----KEISKLAERALKKRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC-----Cc-----CC-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 3689999999999999999999999999999976531 10 00 111111122234567888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+....+++ +.++.+|.||+|+|..|+...
T Consensus 237 ~~i~~~~~~v~v~~~~gg~------~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGGK------EETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCCe------eEEEEeCEEEEeeCCccCCCC
Confidence 8888765555543222221 127899999999999987653
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-07 Score=81.47 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
.+||+|||||||||+||++|++.|++|+|||++..++.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 47999999999999999999999999999999876543
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-07 Score=66.04 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=29.1
Q ss_pred EECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 67 IIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
|||||++||+||..|++.|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998753
|
... |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.42 E-value=8e-07 Score=87.10 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=29.7
Q ss_pred EEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 66 VVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+|||||+|||+||+.|++.|++|+|+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccc
Confidence 69999999999999999999999999988654
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=85.05 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhc-CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhc
Q 013810 284 DRLRHYATTQLSKS-GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (436)
Q Consensus 284 ~~~~~~~~~~l~~~-gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (436)
..+...+.+.+.+. |++++.++ |.+++.+.|.+.+|+ +.+|.||+|+|.....++
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g~-i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRGD-VHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCCc-EEeCEEEECCCCChhhhC
Confidence 35556666666665 99999884 888887778777775 789999999998765443
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=87.57 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||+|||||+||+.||..+++.|.+|+|||+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 589999999999999999999999999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-07 Score=76.18 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=26.9
Q ss_pred EEECCchHHHHHHHhcccC-----CCeEEEEcCCCc
Q 013810 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNH 96 (436)
Q Consensus 66 vIIGgG~AGl~aA~~L~~~-----g~~v~lie~~~~ 96 (436)
+|||||++|++++.+|.+. ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999765 567999999654
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=84.92 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+-|+..|..+++.|.+|||||+.+++. + +. . .++.+......+..++.++.+ ++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL-----p----~~--D----~ei~~~~~~~l~~~gv~i~~~~~v 237 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL-----P----GE--D----PEISKELTKQLEKGGVKILLNTKV 237 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----C----cC--C----HHHHHHHHHHHHhCCeEEEccceE
Confidence 4789999999999999999999999999999987631 1 10 1 122222222233366777765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++..++.+.+.. .++.. ..+.+|++++|+|-+|+...
T Consensus 238 ~~~~~~~~~v~v~~-~~g~~------~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 238 TAVEKKDDGVLVTL-EDGEG------GTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEEecCCeEEEEE-ecCCC------CEEEeeEEEEccCCccCCCC
Confidence 77766554343332 23321 05789999999999988764
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-06 Score=82.26 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccC----CCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~----g~~v~lie~~~~~~~~ 100 (436)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+.+..+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 357999999999999999999884 6899999999876543
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.6e-06 Score=82.80 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHh----cC--CEEEecc-eEEEeCC-----eEEEcCCcEEecceEEEecCCCCchhcccCCCCC
Q 013810 284 DRLRHYATTQLSK----SG--VRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~i~~~~-v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
..+.+.+.+.+++ .| ++++.++ |.+++.. .|.+.+| ++.+|.||+|+|.....+++.+|+..
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~ 284 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGL 284 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCC
Confidence 3566777777777 67 8888885 8887642 2555556 69999999999988777777776543
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.1e-06 Score=86.07 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++|+|||||+||+++|+.|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 37999999999999999999999999999987643
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-06 Score=84.23 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=69.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . .+ ...........+..++.++.+ ++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-----~----~~-----~~~~~~l~~~l~~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-----L----MP-----PEVSSRLQHRLTEMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-----h----CC-----HHHHHHHHHHHHhCCCEEEECCeE
Confidence 468999999999999999999999999999987653210 0 00 011111111233457888764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+...+.+. ..++. ++.+|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~-~~~g~--------~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRAT-LDSGR--------SIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEE-EcCCc--------EEECCEEEECcCCCcch
Confidence 8888765554443 23565 89999999999998764
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=89.29 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 457999999999999999999999999999998864
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.8e-06 Score=86.54 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=68.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+||++.+.+.. . .+ ..+........+..++.++.+ +|.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~d-----~~~~~~l~~~l~~~gV~i~~~~~V~ 231 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R-----EE-----PEISAAVEEALAEEGIEVVTSAQVK 231 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c-----cC-----HHHHHHHHHHHHHcCCEEEcCcEEE
Confidence 6899999999999999999999999999998865321 0 00 011111122234567888776 688
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++.+++.+.+....++. ..++.+|.+|+|+|.+|+...
T Consensus 232 ~i~~~~~~~~v~~~~~~~------~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 232 AVSVRGGGKIITVEKPGG------QGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEcCCEEEEEEEeCCC------ceEEEeCEEEEeECCCcCCCC
Confidence 887654433332211111 127999999999999987653
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=85.21 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999998864
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=89.88 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 458999999999999999999999999999998864
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=84.16 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 68999999999999999999999999999975
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=85.47 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|++|++.+.+... . .+ ..+........+..++.++.+ .|
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~-~--------~~-----~~~~~~~~~~l~~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK-L--------FD-----EEMNQIVEEELKKHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc-c--------cC-----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 368999999999999999999999999999987653110 0 00 011111122234567888764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+...+.+ .+|+ ++.+|.||+|+|.+|...
T Consensus 203 ~~i~~~~~~v~~---~~g~--------~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 203 DSIEGEERVKVF---TSGG--------VYQADMVILATGIKPNSE 236 (427)
T ss_pred EEEecCCCEEEE---cCCC--------EEEeCEEEECCCccCCHH
Confidence 888876543222 2555 799999999999987653
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=82.65 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Cccc---------HHHHHHHHHHHHhcCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (436)
+|+|||||+.|+.+|..+.+.. .++.+|+|+++.+.. +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988775321 245899999986422 1111 2233334566777899
Q ss_pred EEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+++.+++. +.|.+.+|+++.+|.+|+|+|..|.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999988888874 5688899989999999999999987
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.33 E-value=9.3e-07 Score=85.76 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc-ee---cchhhhhhcCcc--------------------cc----
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VF---TPLLASTCVGTL--------------------EF---- 113 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~-~~---~~~~~~~~~~~~--------------------~~---- 113 (436)
.+||+|||||.||+.||...+|.|.++.|+--+-.. .+ .|.+++...|.. .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999888755322 22 233333322211 00
Q ss_pred -------ccc------ccchhhcchhhhcCCCcEEEEeEeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 114 -------RSV------AEPIARIQPAISREPGSYFFLSHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 114 -------~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
... ...-......+....++.++++.|+.+..++. .+.-..+.+|. .+.+++|||+||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~--------~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGP--------EFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCC--------eeecCEEEEeec
Confidence 000 00111122234456788889999998877555 35444445776 899999999999
Q ss_pred CC
Q 013810 180 AE 181 (436)
Q Consensus 180 ~~ 181 (436)
.-
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 74
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=85.29 Aligned_cols=101 Identities=15% Similarity=0.246 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . .+ . .+.+......+..++.++.+ +|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------~-~~-~----~~~~~l~~~l~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP---------R-ED-E----DVAAAVREILEREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc---------c-cC-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 37899999999999999999999999999999865321 0 00 0 11111122234568888775 88
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+ ....++. ++.+|.||+|+|.+|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~~~~--------~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNGGAP--------EITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCCCce--------EEEeCEEEECcCCCcCCC
Confidence 888765544332 2111222 789999999999998764
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.1e-06 Score=84.49 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|+|||||+|||++|+.|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998764
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=85.34 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 456899999999999999999999999999999864
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=84.79 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=69.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. . ..+ ..+........+..++.++.+ +|
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~-----~~d-----~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL-----S-----FLD-----DEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC-----C-----cCC-----HHHHHHHHHHHHHcCCEEEECCEE
Confidence 4789999999999999999999999999999876521 0 000 011111111233457888765 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++..++.+.+. ..++. ++.+|.||+|+|.+|+..
T Consensus 240 ~~i~~~~~~~~v~-~~~g~--------~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVH-LKSGK--------KIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEE-ECCCC--------EEEeCEEEEeecCCcccc
Confidence 8887555555443 23454 799999999999998764
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=82.96 Aligned_cols=100 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. .. .+ . ++.+....+. ..++.++.+ ++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll-----~~-----~d-~----~~~~~l~~l~-~~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-----RH-----LD-D----DISERFTELA-SKRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----cC-H----HHHHHHHHHH-hcCeEEEeCCEE
Confidence 3689999999999999999999999999999986532 00 00 0 1111111112 235776654 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
+.++.+.+.+.+.. .++. ++.+|.|++|+|..|+...
T Consensus 230 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 230 VGVSQDGSGVTLRL-DDGS--------TVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEcCCEEEEEE-CCCc--------EeecCEEEEEECCccCccc
Confidence 88876655544432 3454 7999999999999987654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=83.76 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..+++.|.+|+|+++.+.+.. + .+ ..+...........++.++.+ +|
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~---------~-~d-----~~~~~~l~~~l~~~gV~i~~~~~v 230 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR---------G-FD-----DDMRALLARNMEGRGIRIHPQTSL 230 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc---------c-cC-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 36899999999999999999999999999998765211 0 00 111111112234468888775 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.....+.+.. .++. ++.+|.||+|+|..|+..
T Consensus 231 ~~i~~~~~~~~v~~-~~g~--------~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 231 TSITKTDDGLKVTL-SHGE--------EIVADVVLFATGRSPNTK 266 (446)
T ss_pred EEEEEcCCeEEEEE-cCCc--------EeecCEEEEeeCCCcCCC
Confidence 88875444444332 2454 799999999999988764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.1e-06 Score=84.00 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+... + . .+ . ++........+..++.++.+ +|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~----~-~d-~----~~~~~l~~~l~~~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL-----P----N-ED-A----EVSKEIAKQYKKLGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC-----C----c-cC-H----HHHHHHHHHHHHCCCEEEECCEE
Confidence 3689999999999999999999999999999876421 1 0 00 0 11111122234568888875 78
Q ss_pred EeEeCCCCEEEEEEe-cCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.+.+.+... .+|. ..++.+|.||+|+|.+|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDGK------AQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCCC------eEEEEeCEEEECcCcccCCC
Confidence 888765554433211 2342 12689999999999988764
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.1e-06 Score=83.52 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.. . .+ . .+........+..++.++.+ +|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~---------~-~d-~----~~~~~~~~~l~~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA---------A-AD-E----QVAKEAAKAFTKQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC---------c-CC-H----HHHHHHHHHHHHcCcEEEeCcEE
Confidence 36899999999999999999999999999998765211 0 00 1 11111111223467888775 78
Q ss_pred EeEeCCCCEEEEEEec-CCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+...+.+.... +++ +..+++|.|++|+|..|+...
T Consensus 248 ~~i~~~~~~v~v~~~~~~g~------~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDADGE------AQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEcCCEEEEEEEeCCCc------eeEEEcCEEEEccCCccCCCC
Confidence 8888665555443211 122 127899999999999987653
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=83.47 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. . . .+ ..+........+..++.++.+ +|
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~----~-~~-----~~~~~~l~~~L~~~GV~i~~~~~V 231 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL-----R----G-FD-----PDIRETLVEEMEKKGIRLHTNAVP 231 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc-----c----c-cC-----HHHHHHHHHHHHHCCcEEECCCEE
Confidence 4689999999999999999999999999999876521 0 0 00 011111112234567888765 78
Q ss_pred EeEeCCCCE-EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~-v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+. +.+.. .+|. ++.+|.||+|+|.+|+...
T Consensus 232 ~~i~~~~~g~~~v~~-~~g~--------~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 232 KAVEKNADGSLTLTL-EDGE--------TLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EEEEEcCCceEEEEE-cCCc--------EEEeCEEEEeeCCCcCCCC
Confidence 888754332 44332 3555 7999999999999887653
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-06 Score=83.34 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+ +. .+ . .+........+..++.++.+ +|
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~-----~~-~----~~~~~l~~~l~~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ-----ED-P----AVGEAIEAAFRREGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC-----CC-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 368999999999999999999999999999874321 10 00 0 11111222234568888875 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+.. +++ ++.+|.||+|+|..|+..
T Consensus 242 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 242 SEVDYNGREFILET--NAG--------TLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEcCCEEEEEE--CCC--------EEEeCEEEEccCCCCCcC
Confidence 88887666554432 333 799999999999998764
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.8e-06 Score=81.35 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
||+|||||+||+++|..|++. |++|+|+|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 699999999999999999986 999999999763
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-06 Score=83.23 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCC----CeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g----~~v~lie~~~ 95 (436)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999986 4799999864
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=83.11 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||++|+.+|..|++.|.+|+++++.+.+.-. . . ...+.+......+..++.++.+ +|
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-----~----~-----~~~~~~~l~~~l~~~gI~v~~~~~v 214 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD-----S----F-----DKEITDVMEEELRENGVELHLNEFV 214 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch-----h----c-----CHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 368999999999999999999999999999987652110 0 0 0111222222334567887764 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+...+.. ++. ++.+|.+|+|+|..|+.
T Consensus 215 ~~i~~~~~~~~v~~--~~~--------~i~~d~vi~a~G~~p~~ 248 (444)
T PRK09564 215 KSLIGEDKVEGVVT--DKG--------EYEADVVIVATGVKPNT 248 (444)
T ss_pred EEEecCCcEEEEEe--CCC--------EEEcCEEEECcCCCcCH
Confidence 88876544333321 344 78999999999988764
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.8e-06 Score=82.79 Aligned_cols=100 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||+|++|+.+|..|++.|++|+++|+.+........ ..+........+..++.++.+ .+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~--------------~~~~~~~~~~l~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD--------------PEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh--------------HHHHHHHHHHHHHCCcEEEeCCce
Confidence 379999999999999999999999999999998774332110 122222233344567877554 77
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
..++...+.... ....++. .+.+|.+++++|.+|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~--------~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGE--------EIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeCCc--------EEEeeEEEEeeccccc
Confidence 888876654332 1223554 8999999999999985
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.9e-06 Score=82.82 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..+++.|.+|+|||+.+.+. + + .+ ..+........+..++.++.+ .|
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il-----~----~-~d-----~~~~~~l~~~l~~~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-----P----G-TD-----TETAKTLQKALTKQGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC-----C----C-CC-----HHHHHHHHHHHHhcCCEEEECcEE
Confidence 4789999999999999999999999999999876521 1 1 00 011111111233468888765 78
Q ss_pred EeEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+ ....++. ...+.+|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g~------~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGGA------AETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCCc------eeEEEeCEEEEccCCccccc
Confidence 888754444433 2111221 12789999999999988754
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-06 Score=81.92 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
.+|+|||||+|||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999988 599999987654
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=83.45 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+|+|||||.||+.||..|++.|++|+|||+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998765
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-06 Score=83.00 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. . . .+ ..+........+..++.++.+ .+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il-----~----~-~d-----~~~~~~~~~~l~~~gI~i~~~~~v 230 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-----R----S-FD-----SMISETITEEYEKEGINVHKLSKP 230 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC-----c----c-cC-----HHHHHHHHHHHHHcCCEEEcCCEE
Confidence 3689999999999999999999999999999876521 0 0 00 011111112234467888775 77
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.. .+.+.. .++. ..+.+|.+|+|+|..|+..
T Consensus 231 ~~i~~~~~~~~~v~~-~~g~-------~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 231 VKVEKTVEGKLVIHF-EDGK-------SIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred EEEEEeCCceEEEEE-CCCc-------EEEEcCEEEEeeCCCcCcc
Confidence 77765422 233321 2442 1689999999999998764
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.5e-06 Score=81.50 Aligned_cols=92 Identities=26% Similarity=0.386 Sum_probs=67.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Ccc--------c-HHHHHHHHHHHHhcC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF--------D-DRLRHYATTQLSKSG 298 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~--------~-~~~~~~~~~~l~~~g 298 (436)
++|||||||..|+.+|..|.. .+.+|+||++.+.. +.+ + .+....+.+.+...+
T Consensus 11 ~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 76 (424)
T PTZ00318 11 PNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLP 76 (424)
T ss_pred CeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCC
Confidence 589999999999998877642 24789999986422 111 1 122233455666778
Q ss_pred CEEEecceEEEeC--CeEEE----------cCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDS--QKLIL----------NDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~--~~v~~----------~~g~~i~~D~vi~a~G~~p~ 336 (436)
++++.++|.+|+. +.|.+ .+|.++++|.+|+|+|..|.
T Consensus 77 ~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 77 NRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred eEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 9999988988874 45776 46678999999999999986
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.8e-06 Score=81.10 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
++||+|||||.+|+++|++|+++ |.+|+|+|+.+
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 37999999999999999999998 99999999875
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.4e-05 Score=75.13 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecC--CCCc--------hhcccCCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS--------TLVKSLDLPK 346 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G--~~p~--------~~~~~~~l~~ 346 (436)
+.+.+...+++.||++++++ |.+++.+ .+.+.+|+++.||.+|+|+| ..|. +++++.|+++
T Consensus 113 Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 113 IVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred HHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 44556667888999999985 8888764 35667888999999999999 5552 3577777665
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-05 Score=70.02 Aligned_cols=157 Identities=14% Similarity=0.183 Sum_probs=97.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------c-------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~------------------- 281 (436)
.|+|||+|++|+-+|..|++.+ .+|.++++..... .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 7999999999999999998755 8899998742110 0
Q ss_pred ---------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC-e---EEEc-----------CCcEEecceEEEecCCC
Q 013810 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ-K---LILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~-~---v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
-..++...+.+...+.|++++.+. +.++. ++ . +... +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 012334445566677899999884 66653 22 2 2221 22469999999999976
Q ss_pred Cc---hhcccCC---CCC--------CCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHh
Q 013810 335 PS---TLVKSLD---LPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQK 400 (436)
Q Consensus 335 p~---~~~~~~~---l~~--------~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 400 (436)
.. .+.+... ... +......|+..-+ -+|++|++|-++... .|.+.+-+....=.-+|+.||+
T Consensus 173 a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~--~~~g~~~~gm~~~~~--~~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 173 AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGE--VYPGLYVAGMAANAV--HGLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCe--EcCCEEEeehhhhhh--cCCCccCchhHhHHHhHHHHHH
Confidence 65 1333221 111 1111222333222 489999999888742 2333334444455578999998
Q ss_pred hhhhhc
Q 013810 401 PSFLLA 406 (436)
Q Consensus 401 ~i~~~~ 406 (436)
-|....
T Consensus 249 ~~~~~~ 254 (257)
T PRK04176 249 LILEKL 254 (257)
T ss_pred HHHHHh
Confidence 887643
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-06 Score=83.14 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+... . . .+ ..+........+..++.++.+ +|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l-----~----~-~d-----~~~~~~l~~~l~~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL-----R----G-FD-----DEMRAVVARNLEGRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC-----c----c-cC-----HHHHHHHHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999999999999876421 0 0 00 111111122234567888776 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+.. .++. ++++|.|++|+|.+|+...
T Consensus 268 ~~i~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 268 TQLTKTEGGIKVIT-DHGE--------EFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EEEEEeCCeEEEEE-CCCc--------EEEcCEEEEeecCCCCCCC
Confidence 88875444454432 3454 7999999999999987653
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.5e-06 Score=81.57 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=69.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+||++.+.+. + .. + . .+........+..++.++.+ +|
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l-----~----~~-~-~----~~~~~l~~~l~~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL-----P----RE-D-R----DIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC-----C----Cc-C-H----HHHHHHHHHHHhCCCEEEeCCEE
Confidence 3689999999999999999999999999999876421 0 00 0 0 11111122234568888865 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+++.+.+.. ++. ++.+|.+++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~--~~g--------~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHS--EHA--------QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEE--cCC--------eEEeCEEEEeecCCcCCC
Confidence 88876655555432 223 688999999999998764
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.4e-06 Score=82.09 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=69.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+++|||||+.|+.+|..|++.|.+|++|++.+.+.- . .+ . ..........+..++.++.+ ++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~---------~-~d-~----~~~~~l~~~L~~~gV~i~~~~~v~ 242 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP---------G-ED-A----DAAEVLEEVFARRGMTVLKRSRAE 242 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC---------C-CC-H----HHHHHHHHHHHHCCcEEEcCCEEE
Confidence 6899999999999999999999999999998765211 0 00 0 11111122234568888765 788
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++...+.+.+.. .+|+ ++.+|.|++|+|..|+...
T Consensus 243 ~v~~~~~~~~v~~-~~g~--------~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 243 SVERTGDGVVVTL-TDGR--------TVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EEEEeCCEEEEEE-CCCc--------EEEecEEEEeecCCcCCCC
Confidence 8865444454432 3455 7999999999999987653
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.8e-06 Score=80.86 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.+ .. ..++.++.+ +|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~----~~-~~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--H--------LD-EDISDRFTE----IA-KKKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--c--------cC-HHHHHHHHH----HH-hcCCEEEeCCEE
Confidence 36899999999999999999999999999998765310 0 00 011111111 12 235777654 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+.. .+|+ ++.+|.|++|+|.+|+...
T Consensus 233 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 233 TAVEQDGDGVTLTL-DDGS--------TVTADVLLVATGRVPNGDL 269 (452)
T ss_pred EEEEEcCCeEEEEE-cCCC--------EEEcCEEEEeeccCcCCCC
Confidence 88876555554432 3454 7999999999999987643
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.6e-06 Score=81.80 Aligned_cols=95 Identities=11% Similarity=0.191 Sum_probs=66.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+|+|||||+.|+.+|..|++.|.+|+||++.+.+. +.. + . .+........+..++.++.+ +|.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~--~~~--------d-~----~~~~~l~~~l~~~gI~i~~~~~v~ 213 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN--KLM--------D-A----DMNQPILDELDKREIPYRLNEEID 213 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc--hhc--------C-H----HHHHHHHHHHHhcCCEEEECCeEE
Confidence 689999999999999999999999999999876521 000 0 0 11111122234568888764 777
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++. ..+.+. +++ .+.+|.|++|+|.+|+..
T Consensus 214 ~i~~--~~v~~~---~g~--------~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 214 AING--NEVTFK---SGK--------VEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEeC--CEEEEC---CCC--------EEEeCEEEECcCCCcChH
Confidence 7763 344442 454 789999999999988753
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.4e-05 Score=79.16 Aligned_cols=55 Identities=15% Similarity=0.023 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.||.+.| |+.|++||+|.|+..- ..|. .........++--|++|+++|...
T Consensus 331 ~GGi~vd~~~~-t~i~gLYAaGE~a~~g-~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 331 MGGIKVDLNSK-TSMKNLYAFGEVSCTG-VHGANRLASNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred cCCEEECCCcc-ccCCCeEecccccccC-CCccccchhHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999 8999999999997410 1111 111234567888899999888653
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=82.19 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=82.31 Aligned_cols=101 Identities=10% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ .++...+ ....+..++.++.+ .|
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~~--------~d-~~i~~~l----~~~L~~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--RK--------FD-ETIINEL----ENDMKKNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--cc--------CC-HHHHHHH----HHHHHHCCCEEEeCCEE
Confidence 4789999999999999999999999999999876421 00 00 0111111 11233467887765 67
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.. .+.+....++. ++.+|.|++|+|..|+..
T Consensus 302 ~~I~~~~~~~v~v~~~~~~~--------~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSDGRK--------YEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECCCCE--------EEECCEEEECcCCCCCcc
Confidence 77775432 23332112222 689999999999887754
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=80.51 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=30.1
Q ss_pred CcEEEECCchHHHHHHHhccc----CCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~ 94 (436)
+||+||||||+|+++|..|++ .|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999998 89999999984
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=73.00 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHH-hcCCEEEecc-eEEEeC---Ce--EE---EcCCc--EEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLS-KSGVRLVRGI-VKDVDS---QK--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~i~~~~-v~~i~~---~~--v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+.+.+.+.+. ..|++++.++ |.+++. +. +. +.+++ ++.+|.||+|.|.....+++.+|+.
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 355566666665 4589999985 877752 22 33 23342 6899999999999988888877765
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.9e-06 Score=85.80 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
..+++|+|||||.|||+||++|.+.|++|+|+|..+..+.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45689999999999999999999999999999998876543
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=66.90 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=98.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------c-------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~------------------- 281 (436)
.|+|||+|++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 7999999999999999998765 7888888853210 0
Q ss_pred ---------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC-----eEEEc-----------CCcEEecceEEEecCC
Q 013810 282 ---------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ-----KLILN-----------DGTEVPYGLLVWSTGV 333 (436)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~-----~v~~~-----------~g~~i~~D~vi~a~G~ 333 (436)
...++.+.+.+...+.|++++.+. +.++. ++ +|.+. |..++.++.||.|+|.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 012334455556677899998884 66653 22 34432 2247899999999997
Q ss_pred CCc--h-hcccCCCCCCCC---Cc--E--------EeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHH
Q 013810 334 GPS--T-LVKSLDLPKSPG---GR--I--------GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397 (436)
Q Consensus 334 ~p~--~-~~~~~~l~~~~~---G~--i--------~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~ 397 (436)
... . +.+.+++..... |. . .|+.. + .-+|++|++|-.+.. ..|.+.+-+....=.-+|+.
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t-~-~~~~g~~~~gm~~~~--~~~~~rmgp~fg~m~~sg~~ 244 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENT-R-EVVPNLYVAGMAVAA--VHGLPRMGPIFGGMLLSGKH 244 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhcc-C-cccCCEEEechhhhh--hcCCCCcCchHHHHHHhhHH
Confidence 764 2 344444332211 10 1 12222 2 248999999988763 23444344444555578999
Q ss_pred HHhhhhhh
Q 013810 398 FQKPSFLL 405 (436)
Q Consensus 398 aa~~i~~~ 405 (436)
||+-|...
T Consensus 245 ~a~~~~~~ 252 (254)
T TIGR00292 245 VAEQILEK 252 (254)
T ss_pred HHHHHHHH
Confidence 99888754
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.1e-06 Score=83.25 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.5
Q ss_pred cEEEECCchHHHHHHHhcccCC---CeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g---~~v~lie~~~ 95 (436)
||||||||+||..+|..|++.+ ++|+|||+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 6999999999999999999977 8999999653
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=85.60 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- .. .+ ...........+..++.++.+ .+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----~~----ld-----~~~~~~l~~~l~~~GV~v~~~~~v 205 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----KQ----LD-----QTAGRLLQRELEQKGLTFLLEKDT 205 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----hh----cC-----HHHHHHHHHHHHHcCCEEEeCCce
Confidence 36899999999999999999999999999998765211 00 00 011111122234568888776 56
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.+..+.....+. ..+|+ ++.+|.+|+|+|.+|+..
T Consensus 206 ~~i~~~~~~~~v~-~~dG~--------~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 206 VEIVGATKADRIR-FKDGS--------SLEADLIVMAAGIRPNDE 241 (785)
T ss_pred EEEEcCCceEEEE-ECCCC--------EEEcCEEEECCCCCcCcH
Confidence 7776544332222 23665 899999999999988764
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=76.47 Aligned_cols=95 Identities=27% Similarity=0.465 Sum_probs=72.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCc---------c-cHHHHHHHHHHHHhcC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSS---------F-DDRLRHYATTQLSKSG 298 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--l~~---------~-~~~~~~~~~~~l~~~g 298 (436)
++|||||||+.|+..|..|.... ++.+|+||++... +.. + ..++..-+.+.+++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 38999999999999999997521 1478999999632 111 1 2333444566777555
Q ss_pred -CEEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCch
Q 013810 299 -VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST 337 (436)
Q Consensus 299 -V~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (436)
|+++.++|++|+. ..|++.++.++++|.+|+++|..++.
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 9999999999874 67999998889999999999999984
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=85.93 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+||++.+.+.- .. .+ ...........+..++.++.+ .+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-----~~----ld-----~~~~~~l~~~L~~~GV~v~~~~~v 210 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-----EQ----LD-----QMGGEQLRRKIESMGVRVHTSKNT 210 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-----hh----cC-----HHHHHHHHHHHHHCCCEEEcCCeE
Confidence 36899999999999999999999999999998765211 00 00 011111122234568888876 67
Q ss_pred EeEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+..+. ....+ ...+|+ .+.+|.||+|+|.+|+.
T Consensus 211 ~~I~~~~~~~~~~v-~~~dG~--------~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 211 LEIVQEGVEARKTM-RFADGS--------ELEVDFIVFSTGIRPQD 247 (847)
T ss_pred EEEEecCCCceEEE-EECCCC--------EEEcCEEEECCCcccCc
Confidence 7776432 22222 223666 89999999999999875
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.4e-05 Score=80.25 Aligned_cols=101 Identities=12% Similarity=0.201 Sum_probs=64.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+||++.+.+. + . .+ .++...+.+ ..+.. +.++.+ .|+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il-----~----~-~d-~~~~~~~~~----~l~~~-v~i~~~~~v~ 238 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI-----P----A-AD-KDIVKVFTK----RIKKQ-FNIMLETKVT 238 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC-----C----c-CC-HHHHHHHHH----HHhhc-eEEEcCCEEE
Confidence 689999999999999999999999999999886521 1 0 00 011111111 12223 555554 677
Q ss_pred eEeCCCCEEEEEEec-CCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++...+.+.+.... +++ +.++++|.||+|+|.+|+..
T Consensus 239 ~i~~~~~~~~v~~~~~~~~------~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 239 AVEAKEDGIYVTMEGKKAP------AEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEcCCEEEEEEEeCCCc------ceEEEeCEEEEeecccccCC
Confidence 776544444432211 121 12689999999999998765
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=79.99 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=64.6
Q ss_pred CCcEEEECCchHHHHHHHhcc---cCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGID---TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~---~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.++|+|||||+.|+.+|..+. +.|.+|+||++.+.+. + . .+ . .+.+......+..++.++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~----~-~d-~----~~~~~l~~~L~~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----R----G-FD-S----TLRKELTKQLRANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----c----c-cC-H----HHHHHHHHHHHHcCCEEEcC
Confidence 368999999999999997664 4589999999876521 0 0 00 1 11111111234467887775
Q ss_pred -EeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 -HCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 -~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.+..++.... ...+.. .++. ++++|.+++|+|.+|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~-~~g~--------~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTF-ESGK--------TLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEE-cCCC--------EEEcCEEEEeeCCCcCcc
Confidence 6777765422 222221 2454 799999999999988764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=79.72 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ . .+........+..++.++.+ +|
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l------~~-----~d-~----~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL------FR-----ED-P----LLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC------Cc-----ch-H----HHHHHHHHHHHhCCCEEEcCcEE
Confidence 368999999999999999999999999999874221 00 00 0 11111112234567888765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+.. ++. ++.+|.+|+|+|..|+..
T Consensus 252 ~~i~~~~~~~~v~~--~~g--------~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 252 SLVEHDDNGFVLTT--GHG--------ELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEeCCEEEEEE--cCC--------eEEeCEEEEccCCCCCcc
Confidence 77776555554432 233 688999999999998765
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=81.92 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ . .+........+..++.++.+ .|
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l------~~-----~d-~----~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF------FR-----ED-P----AIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc------cc-----cC-H----HHHHHHHHHHHHCCCEEEcCCEE
Confidence 368999999999999999999999999999975321 10 00 0 11111122234567888765 77
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.++..+.+.. +++ ++.+|.+|+|+|..|+..
T Consensus 334 ~~i~~~~~~~~v~~--~~~--------~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 334 SQVAHVDGEFVLTT--GHG--------ELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEecCCEEEEEe--cCC--------eEEeCEEEEccCCCcCCC
Confidence 78876555554432 233 689999999999998764
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=69.70 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=55.3
Q ss_pred CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCCCchh----cccCCCCC
Q 013810 277 EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL----VKSLDLPK 346 (436)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~----~~~~~l~~ 346 (436)
.+....-+.+.+.+.+.+++.|++++.++ |.+++- + .|.+++|.++++|.||+|+|+....| .+..|+.+
T Consensus 166 HiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 166 HIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred ccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCccc
Confidence 34333446778889999999999999996 877753 2 57788999999999999999998743 45556665
Q ss_pred CC
Q 013810 347 SP 348 (436)
Q Consensus 347 ~~ 348 (436)
..
T Consensus 246 ~~ 247 (486)
T COG2509 246 RA 247 (486)
T ss_pred cc
Confidence 44
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-06 Score=85.13 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+.+||||||||++||+||..|++.|++|+|+|+++..+.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 358999999999999999999999999999998876544
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.3e-05 Score=78.38 Aligned_cols=92 Identities=15% Similarity=0.265 Sum_probs=72.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC------------CcccHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQLS 295 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~l------------~~~~~~~~~~~~~~l~ 295 (436)
.+|+|||||+.|+.+|..+++.+ .+|++++.. ... ....+++.+.+.+.++
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 889988641 111 0134567778888888
Q ss_pred hcCCEEEec-ceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.||+++.+ +|.+++.. .+.+++|+++.+|.+|+|+|..|.
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 999999987 48877542 356678888999999999999875
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=79.39 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=66.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ ..+........+.. +.++.+ ++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-----~d-----~~~~~~~~~~l~~~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-----L-----ED-----PEVSKQAQKILSKE-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----c-----hh-----HHHHHHHHHHHhhc-cEEEcCCEE
Confidence 47899999999999999999999999999998865311 0 00 01111111122334 676654 77
Q ss_pred EeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++...+ .+.+. ..+++ +.++.+|.+++|+|..|+...
T Consensus 233 ~~i~~~~~~~v~~~-~~~~~------~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 233 TSVEKSGDEKVEEL-EKGGK------TETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred EEEEEcCCceEEEE-EcCCc------eEEEEeCEEEEccCCccCCCC
Confidence 77765443 34432 11222 127899999999999987753
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=78.01 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=72.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CC----cccHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQLS 295 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~--------l~----~~~~~~~~~~~~~l~ 295 (436)
.+|+|||||+.|+.+|..+++.| .+|+++... .. ++ ....++.+.+.+.++
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 277 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVK 277 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999876 888888652 11 01 124577788888999
Q ss_pred hcCCEEEec-ceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.|++++.+ ++.+++.. .|.+.+|+++.+|.||+|+|..|.
T Consensus 278 ~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999987 48777642 356678888999999999999875
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=82.19 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=66.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------Cc--ccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~~--~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ |. ++.+....-.+.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45679999999999999999999866 899999985321 21 2344445555677888
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
||+++.+.... +.+.+.....+|.||+|+|..+.
T Consensus 603 GVe~~~gt~Vd-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSPD-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCceeE-----EEhhhheeccCCEEEECcCCCCC
Confidence 99999985222 23334445679999999999864
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.2e-05 Score=75.22 Aligned_cols=105 Identities=17% Similarity=0.302 Sum_probs=77.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+||++|+|+.|+.+|..|...+.+||+|++++... ... ....+.+....+.++.++.++.+ .+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~-----~~l---------f~~~i~~~~~~y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL-----PRL---------FGPSIGQFYEDYYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch-----hhh---------hhHHHHHHHHHHHHhcCeEEEEecce
Confidence 4679999999999999999999999999999986521 111 11223344444567789999887 45
Q ss_pred EeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 141 ~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
.+++... +.+.-..+.++. ++.+|-||+.+|++|....+.
T Consensus 279 s~l~~~~~Gev~~V~l~dg~--------~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDGK--------TLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccCC--------EeccCeEEEeecccccccccc
Confidence 5665433 344444455787 899999999999999887665
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=78.36 Aligned_cols=101 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+++|||||+.|+.+|..|++.|.+|+|+++...+ +.+ + . .+........+..++.++.+ .+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---~~~--------d-~----~~~~~l~~~L~~~gV~i~~~~~v~ 244 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGF--------D-Q----DCANKVGEHMEEHGVKFKRQFVPI 244 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc---ccc--------C-H----HHHHHHHHHHHHcCCEEEeCceEE
Confidence 57999999999999999999999999999864211 000 0 0 11111112234467888775 556
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
.++...+.+.+.. .+++. ..++.+|.+++|+|..|+..
T Consensus 245 ~v~~~~~~~~v~~-~~~~~-----~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 245 KVEQIEAKVKVTF-TDSTN-----GIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEEEcCCeEEEEE-ecCCc-----ceEEEeCEEEEEecCCcCCC
Confidence 6654443333321 12210 01689999999999988764
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.2e-05 Score=84.55 Aligned_cols=92 Identities=25% Similarity=0.282 Sum_probs=70.1
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.| .+|+++++.+.+ | .++.++.+...+.+++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~ 369 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL 369 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhh
Confidence 34679999999999999999999866 899999985311 2 24556666667788889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC-Cc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (436)
||+++.+... +..+.+++.....+|.||+|+|.. |.
T Consensus 370 Gv~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 370 GGRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred cCeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCCCCC
Confidence 9999988532 234556666666799999999984 54
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.2e-06 Score=83.70 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+++++|+|||||++||+||..|++.|++|+|+|+.+.++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3457899999999999999999999999999999987654
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.3e-05 Score=78.03 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=65.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
.+|+|||||+.|+.+|..|++.|.+|+||++...+ +.+ + . .+.+......+..++.++.+ .+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l---~~~--------d-~----~~~~~l~~~l~~~GV~i~~~~~v~ 246 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL---RGF--------D-R----QCSEKVVEYMKEQGTLFLEGVVPI 246 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc---ccC--------C-H----HHHHHHHHHHHHcCCEEEcCCeEE
Confidence 58999999999999999999999999999864210 000 0 0 11111112233467888776 556
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
.++.....+.+. ..+++ ++.+|.|++|+|..|+...
T Consensus 247 ~v~~~~~~~~v~-~~~g~--------~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 247 NIEKMDDKIKVL-FSDGT--------TELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EEEEcCCeEEEE-ECCCC--------EEEcCEEEEeeCCCCCccc
Confidence 665443333332 23555 7899999999999987653
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.1e-06 Score=80.80 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37899999999999999999999999999998864
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=77.71 Aligned_cols=89 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+++|..|++.+ .+|+++++.+.+ + ..+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 34468999999999999999998765 899999985422 1 13556677777888889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
||+++.++.. ...+.+.+.. +.+|.||+|+|..
T Consensus 204 gv~~~~~~~v---~~~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CCEEEeCCEE---CCccCHHHHH-hhCCEEEEccCCC
Confidence 9999988632 1123333333 7799999999986
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.4e-06 Score=82.35 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.5
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~ 99 (436)
++|+|||||+|||+||+.|++.| ++|+|+|++++.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 47999999999999999999977 89999999987654
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-06 Score=79.62 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=34.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+||+|+|||.|||+||.+|+++|++|||+|..++.+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999999999999987544
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.5e-05 Score=77.65 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+... . . +...+........+..++.++.+ .+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il-----~----~------~d~~~~~~l~~~L~~~GV~i~~~~~v 316 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL-----R----G------FDEEVRDFVAEQMSLRGIEFHTEESP 316 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc-----c----c------cCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 4689999999999999999999999999999876521 0 0 01111111122234568888765 67
Q ss_pred EeEeCC-CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.. +..+.+.. .++. ...+|.+|+|+|..|+..
T Consensus 317 ~~i~~~~~g~v~v~~-~~g~--------~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 317 QAIIKSADGSLSLKT-NKGT--------VEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EEEEEcCCCEEEEEE-CCeE--------EEecCEEEEeeccccCCC
Confidence 777542 33344432 2232 345899999999998764
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.8e-05 Score=78.02 Aligned_cols=110 Identities=13% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchh-hhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA-ISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~ 139 (436)
..+|+|||||+.|+..|..|++.|.+|+|||+.+.+. + . .+ ..+...... +.+..++.++.+ .
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll-----~----~-~d-----~eis~~l~~~ll~~~GV~I~~~~~ 376 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL-----P----L-LD-----ADVAKYFERVFLKSKPVRVHLNTL 376 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc-----c----c-CC-----HHHHHHHHHHHhhcCCcEEEcCCE
Confidence 3689999999999999999999999999999976621 1 0 00 011111111 123467888766 7
Q ss_pred eEeEeCCCC--EEEEEEec--CCcccC----CCCceeeeccEEEEeCCCCCCCCC
Q 013810 140 CAGIDTDNH--VVHCETVT--DELRTL----EPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 140 v~~id~~~~--~v~~~~~~--~g~~~~----~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
|..++.... .+.+.... +++... .....++.+|.|++|+|.+|+...
T Consensus 377 V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 377 IEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 777875432 24432111 010000 000126899999999999987643
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=70.97 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.++.+.+.+.+.+.|++++.++ +.+++. + .+.+.+|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 3455667777777899999984 777753 2 366778989999999999998765
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=80.22 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=34.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
++|+|||||.|||+||..|.+.|++|+|+|++++.+.+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999887654
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=77.85 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+|||||+||++||+.|++.|++|+|||+.+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999997654
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.7e-05 Score=72.80 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--CCe---EEEcCCcEEecceEEEecCCCCc----------hhcccCCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS----------TLVKSLDLPK 346 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~---v~~~~g~~i~~D~vi~a~G~~p~----------~~~~~~~l~~ 346 (436)
+.+.+.+.+++.||+++.++ |.+++ +++ |.++++.++.+|.||+|+|-..- .+++.+|..+
T Consensus 111 Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 111 VVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp HHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 34555667788899999995 88884 344 56667789999999999986542 2466676544
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=70.27 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=67.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||+|..|+.+|..|++.+.+|+++++.+.+...+ .+.+......+..++.++.. .+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~-----------------~~~~~~~~~l~~~gV~i~~~~~v 208 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK-----------------ILIKRLMDKVENGNIILHTNRTL 208 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCH-----------------HHHHHHHhhccCCCeEEEeCCEE
Confidence 4789999999999999999999999999999876421110 00111111133457887764 77
Q ss_pred EeEeCCCC---EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~---~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.. .+.+....++. ++.++.+|.||+|+|..|+..
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~~-----~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNSD-----NIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCCC-----eEEEEECCEEEEEeCCccChh
Confidence 88876543 23343211111 012789999999999988764
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.1e-05 Score=73.89 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|||||||.||..||...+|.|.+.+|+..+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4589999999999999999999999999988765
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=79.23 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998764
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=79.97 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=33.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
+|+|||||+|||+||..|++.|++|+|+|+++.++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~ 37 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGL 37 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCc
Confidence 6999999999999999999999999999999876543
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.4e-05 Score=76.08 Aligned_cols=90 Identities=22% Similarity=0.273 Sum_probs=66.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. + .++.++.....+.+++.|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 197 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCC
Confidence 3468999999999999999998765 899999985311 2 245566666677788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCC-CCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (436)
|+++.+... ...+.+.+. ...+|.||+|+|. .|.
T Consensus 198 v~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 198 VTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred cEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 999998632 222333333 3469999999997 554
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.8e-05 Score=72.85 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=61.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----------~~~~~~~~~~~~~l~~~ 297 (436)
+.+++|+|||+|+.|+++|..|++.+ .+|+++++.+... .++.+......+.+.+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEA 81 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhC
Confidence 34459999999999999999998765 8999999853221 02223333344556677
Q ss_pred CCEEEecc-eEEEeC------CeEE--E--cCCcEEecceEEEecCCC
Q 013810 298 GVRLVRGI-VKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 298 gV~i~~~~-v~~i~~------~~v~--~--~~g~~i~~D~vi~a~G~~ 334 (436)
|++++.++ +..++. +... . .++..+.+|.||+|+|..
T Consensus 82 ~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 82 GVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred CeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 99999885 433221 1111 0 112247899999999984
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=77.48 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+|||||++|+++|++|++.|++|+|||+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 47999999999999999999999999999998753
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.6e-05 Score=79.79 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhcccC----CCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~----g~~v~lie~~~~~~~ 99 (436)
++||+|||||+|||+||..|++. |++|+|+|+++..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 36899999999999999999998 999999999987644
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00036 Score=60.31 Aligned_cols=156 Identities=13% Similarity=0.211 Sum_probs=92.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----------Cc--ccHH-------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----------SS--FDDR------------- 285 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----------~~--~~~~------------- 285 (436)
.|+|||+|++|+-+|.+|++.+ .+|.++++.-.+ +. ...+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 7999999999999999999765 999999985211 11 0111
Q ss_pred -------------HHHHHHHHHHhcCCEEEecc-eEEE--eCC----eEEEc-----------CCcEEecceEEEecCCC
Q 013810 286 -------------LRHYATTQLSKSGVRLVRGI-VKDV--DSQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 286 -------------~~~~~~~~l~~~gV~i~~~~-v~~i--~~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
+...+....-+.|++++... +.++ .++ +|.++ |--.++++.|+-+||..
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 11122222334567777663 5554 122 23322 33468999999999998
Q ss_pred Cc--hh-cccC---CCCCC-CC-------CcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHh
Q 013810 335 PS--TL-VKSL---DLPKS-PG-------GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQK 400 (436)
Q Consensus 335 p~--~~-~~~~---~l~~~-~~-------G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 400 (436)
.. .+ .+.. +.++- ++ -.+.|+... .-+||+|++|-.++.- .|.+.+-+....=.-+|+.||+
T Consensus 178 a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~--eV~pgL~vaGMa~~av--~G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 178 AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTG--EVYPGLYVAGMAVNAV--HGLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccc--cccCCeEeehhhHHhh--cCCcccCchhhhhhhchHHHHH
Confidence 86 33 3222 22221 10 112233322 3689999999887631 2333334444455578888888
Q ss_pred hhhhh
Q 013810 401 PSFLL 405 (436)
Q Consensus 401 ~i~~~ 405 (436)
.|...
T Consensus 254 ~i~e~ 258 (262)
T COG1635 254 EILEK 258 (262)
T ss_pred HHHHH
Confidence 77654
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.8e-05 Score=80.11 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~~~ 99 (436)
+++|+|||||+|||+||++|.+. |++|+|+|+++..+.
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 46899999999999999999999 999999999987654
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=73.49 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccc------CCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~------~g~~v~lie~~~~~~~~ 100 (436)
...+||+|||||||||+||++|++ ..++|.|+|+....+.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 446899999999999999999965 45789999998776554
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=71.51 Aligned_cols=90 Identities=24% Similarity=0.408 Sum_probs=65.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--C-c---------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--S-S--------------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~-~--------------------------- 281 (436)
.|+|||||++|+-+|..|++.+ .+|.++++.+.. + .
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 7999999999999999998754 677777763210 0 0
Q ss_pred ----------------ccHHHHHHHHHHHHhcCCEEEecceEEEeC----CeEEEcCCcEEecceEEEecCCCC
Q 013810 282 ----------------FDDRLRHYATTQLSKSGVRLVRGIVKDVDS----QKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 282 ----------------~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
....+.+.+.+.+.+.||+++..+|.+++. ..|.+++|+++.+|.||.|+|..+
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 012233445556667799998767777753 247778898999999999998765
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=74.08 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------Cc----ccHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (436)
.|+|||||+.|+.+|..+++.+ .+|+++++.... +. ...++.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 7999999999999999998765 889999875321 11 12456667777788
Q ss_pred hcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.|++++..++..++.+ .+.+.++ ++.+|.+|+|+|..|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999986667777642 2444444 5889999999999886
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.3e-05 Score=80.14 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
.+++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46899999999999999999999 4999999998753
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.2e-05 Score=79.48 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++||+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4558999999999999999999999999999999853
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=64.88 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=57.6
Q ss_pred EEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCC-CCC--------------Cc----------------
Q 013810 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS---------------- 281 (436)
Q Consensus 234 vViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~-~~l--------------~~---------------- 281 (436)
+|||+|++|+-+|..|.+.+ .+ |+++++. .+. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999998876 55 8888874 211 00
Q ss_pred -------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCC
Q 013810 282 -------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 -------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+++.+++++..++.++++..++ |++++.+ .|.+.+++++.||.||+|+|..
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 012344667777888899988874 8887542 3777888889999999999973
|
... |
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.4e-05 Score=79.16 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+||+|||||.+|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999999754
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.4e-05 Score=75.36 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+||+|||||+||+++|..|++.|.+|+|+|+++..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 689999999999999999999999999999976643
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.5e-05 Score=74.69 Aligned_cols=92 Identities=20% Similarity=0.361 Sum_probs=65.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------Cc--ccH-HHHHHHHHHHHh
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDD-RLRHYATTQLSK 296 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~~--~~~-~~~~~~~~~l~~ 296 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. +. ++. ++.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 44568999999999999999999876 899999974311 11 222 255556677888
Q ss_pred cCCEEEecceEEEeCCeEEEcCC-cEEecceEEEecCC-CCc
Q 013810 297 SGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 297 ~gV~i~~~~v~~i~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 336 (436)
.||+++.++.. ...+.+.+. +++.+|.||+|+|. .|.
T Consensus 204 ~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 204 LGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred cCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 99999988622 122333333 34569999999997 454
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.5e-05 Score=77.12 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+|||||.+|+++|++|++.|.+|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5999999999999999999999999999999864
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.74 E-value=3e-05 Score=78.63 Aligned_cols=39 Identities=28% Similarity=0.492 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC-----CeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g-----~~v~lie~~~~~~~ 99 (436)
+.++|+|||||+|||+||..|++.| ++|+|+|+.+..+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 4578999999999999999999877 89999999887544
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8e-05 Score=79.16 Aligned_cols=92 Identities=22% Similarity=0.390 Sum_probs=67.5
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C----C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L----S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~----l----~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|+.|+.+|..|++.+ .+|+++++.+. + + .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 34578999999999999999999866 89999998421 1 1 23455656666778889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCC-CCc
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (436)
||+++.+... ...+.+++..+..+|.||+|+|. .|.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999988532 23344444445679999999998 454
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.7e-05 Score=78.17 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||+|+||++||+.|++.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34799999999999999999999999999999976
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.7e-05 Score=79.96 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++.+|+|||||+|||++|..|++.|++|+|||+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999865
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.7e-05 Score=78.81 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=34.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+||+|||||++||+||..|++.|++|+|+|+++..+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG 38 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG 38 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999977643
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.6e-05 Score=68.81 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||.-||..+.-..+.|.+||+||-.+... +..+. ++......+....++.|..+ +|
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD~-----Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMDG-----EISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccCH-----HHHHHHHHHHHhcCceeEeccEE
Confidence 4789999999999999999999999999999765421 11111 12222222344478888776 88
Q ss_pred EeEeCCCC-EE--EEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNH-VV--HCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~-~v--~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+..++... .+ .+....++. ..++++|.|++|+|-+|+.-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k------~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGK------KETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeccCCCceEEEEEecCCCc------eeEEEeeEEEEEccCccccc
Confidence 88887655 33 344333443 23899999999999988764
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.9e-05 Score=75.91 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|+|||||.+|+++|++|++.|.+|+|||+...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 458999999999999999999999999999998764
|
|
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.6e-05 Score=78.30 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=33.2
Q ss_pred CcEEEECCchHHHHHHHhcccC------CCeEEEEcCCCcceec
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMVFT 100 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~------g~~v~lie~~~~~~~~ 100 (436)
++|+|||||.|||+||..|.+. |++|+|+|++++.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 5799999999999999999885 4789999999876543
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.5e-05 Score=76.21 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=32.7
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~ 98 (436)
++|+|||||.|||+||++|++.+ .+++|+|++++.+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999988 8999999987753
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.6e-05 Score=80.73 Aligned_cols=91 Identities=19% Similarity=0.384 Sum_probs=66.3
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. + .++.++.+...+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4578999999999999999999876 899999985321 1 135667777778889999
Q ss_pred CEEEecceEEEeCCeEEEcCCc-EEecceEEEecCCC-Cc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGT-EVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~-~i~~D~vi~a~G~~-p~ 336 (436)
|+++.+.+.. ..+.+.+-. ...+|.||+|+|.. |.
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCCCCC
Confidence 9999986321 122222211 24589999999984 44
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.8e-05 Score=75.90 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCchhcccCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
..+.+.+.+.+++.|++++.++ |.+++. +. |.+.++ ++.+|.||+|+|.....+...+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc
Confidence 3566677777888999999984 888754 32 444454 799999999999766555554443
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=77.90 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=64.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ + ..+.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 4568999999999999999999766 899999985321 1 123444555556777889
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+.-.. +.+.+.+...+|.||+|+|..+.
T Consensus 602 Ve~~~g~~~d-----~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 602 VEFKYGCSPD-----LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cEEEEecccc-----eEhhhhhcccccEEEECCCCCCC
Confidence 9998873111 22333345669999999998764
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=68.27 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=61.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-CC-----Ccc----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----SSF---------------------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l-----~~~---------------------- 282 (436)
.|+|||||..|+|.|..+++.| .+|.|+... + +. +.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 3899999999999999999877 788888432 1 11 110
Q ss_pred --------------------------c-HHHHHHHHHHHHh-cCCEEEecceEEEeC-----CeEEEcCCcEEecceEEE
Q 013810 283 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVW 329 (436)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~~-----~~v~~~~g~~i~~D~vi~ 329 (436)
| ..+.+.+.+.+++ .+++++..+|+++.. .+|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 1 1233445556665 589998878888743 368889999999999999
Q ss_pred ecCC
Q 013810 330 STGV 333 (436)
Q Consensus 330 a~G~ 333 (436)
|+|.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.2e-05 Score=79.12 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999998753
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00035 Score=65.38 Aligned_cols=90 Identities=24% Similarity=0.381 Sum_probs=68.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCC------------CC-----cccHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYATTQ 293 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~------------l~-----~~~~~~~~~~~~~ 293 (436)
.|+|||+|+.|+-.|.++++.+ .+ +.+++.... .| ...+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999999865 45 444444211 11 2346777888888
Q ss_pred HHhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
....++++....+.+++.. .|.+.+++ +.++.||+|+|..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8888999998778877764 35556666 999999999999876
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.68 E-value=3.6e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
||||||+|.|||+||+.+++.|.+|+||||.+..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccc
Confidence 7999999999999999999999999999998763
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.3e-05 Score=77.36 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.||++||+.+++.|.+|+||||.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4689999999999999999999999999999998654
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.67 E-value=3.3e-05 Score=77.29 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=33.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+|+|||||+|||+||.+|.+.|++|+|+|+.+..+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999987544
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.66 E-value=3e-05 Score=78.66 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+.+.+.+.+++.|++++.++ |.+|. ++ +|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 4667778888889999999995 88775 33 4777888889999999998853
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.66 E-value=4.5e-05 Score=67.18 Aligned_cols=91 Identities=29% Similarity=0.445 Sum_probs=61.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----CcccH-----------HHH--H--HHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (436)
+|+|||||+.|+.+|..|+..+ .+|+++++.+.. ..+.. ... + .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 4899999999999999999654 899999764311 11000 011 1 3334
Q ss_pred HHHhcCCEEEec-ceEEEeC--Ce-------E---EEcCCcEEecceEEEecCCCCc
Q 013810 293 QLSKSGVRLVRG-IVKDVDS--QK-------L---ILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 293 ~l~~~gV~i~~~-~v~~i~~--~~-------v---~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+...+++++.+ ++.+++. .. + ...++.++.+|.+|+|+|..|.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 456789999766 4776653 21 1 1234568999999999998876
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00013 Score=72.67 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=61.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------Ccc--cHHHHHHHHHHHHhc
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSF--DDRLRHYATTQLSKS 297 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~~~--~~~~~~~~~~~l~~~ 297 (436)
..++|+|||+|+.|+.+|..|+... .+.+|+|+++.+.. |.. ...+.+...+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 3458999999999999999997521 24899999996422 111 122334455567778
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+|+++.+. + +..+.+++-. ..+|.||+|+|..+.
T Consensus 93 ~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 89988763 3 1223343332 469999999999864
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00014 Score=72.82 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=64.9
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|+..+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 4568999999999999999998765 899999985421 1 235566666677888999
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.++ +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 9999885 421 111111 12469999999999774
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00094 Score=66.60 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=63.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------------------------------ 279 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l------------------------------ 279 (436)
++|+|||+|++|+-+|..|.+.+ .+|+++++.. +.
T Consensus 11 ~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~ 76 (461)
T PLN02172 11 QHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYES 76 (461)
T ss_pred CCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhh
Confidence 58999999999999999998755 6777777631 10
Q ss_pred ---------------Cc-------------c--cHHHHHHHHHHHHhcCCE--EEecc-eEEEeC--Ce--EEEcCC--c
Q 013810 280 ---------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRGI-VKDVDS--QK--LILNDG--T 320 (436)
Q Consensus 280 ---------------~~-------------~--~~~~~~~~~~~l~~~gV~--i~~~~-v~~i~~--~~--v~~~~g--~ 320 (436)
+. + ..++.+++++..+..|+. +..++ |.+++. +. |.+.++ .
T Consensus 77 L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~ 156 (461)
T PLN02172 77 LRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGF 156 (461)
T ss_pred hhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCc
Confidence 00 0 034666777777788887 66764 888764 22 444332 2
Q ss_pred --EEecceEEEecCC--CCc
Q 013810 321 --EVPYGLLVWSTGV--GPS 336 (436)
Q Consensus 321 --~i~~D~vi~a~G~--~p~ 336 (436)
+..+|.||+|+|. .|.
T Consensus 157 ~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred eEEEEcCEEEEeccCCCCCc
Confidence 4679999999994 554
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.3e-05 Score=78.82 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..++|+|||||+|||+||..|++.|++|+|+|+.+..+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 457999999999999999999999999999999877544
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.7e-05 Score=75.14 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
.+.||+|||||++|+++|++|++. |.+|+|+|++.
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 357999999999999999999987 89999999864
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.5e-05 Score=75.10 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||||||+|.||++||+.+++.|.+|+||||....
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~ 55 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGA 55 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 579999999999999999999999999999998754
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.8e-05 Score=76.36 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+.+.+.+.+++.|++++.++ |.+|.. + +|.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 4667778888999999999995 888752 2 5777889899999999998854
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.9e-05 Score=77.64 Aligned_cols=35 Identities=26% Similarity=0.179 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+.||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 46999999999999999999999999999997654
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=65.09 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+..+|+|||||.-|+++|.+|++.|.++.|+|+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 3478999999999999999999999999999954
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00029 Score=71.01 Aligned_cols=84 Identities=24% Similarity=0.306 Sum_probs=62.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
++|+|||+|.+|+++|..|.+.| .+|+++++.+ ......+.+.|++.||+++.+. +.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc--
Confidence 48999999999999999998766 8999998753 1233445667888899998874 22
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCCc-hh---cccCCCCC
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGPS-TL---VKSLDLPK 346 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~---~~~~~l~~ 346 (436)
....+|+||+++|..|+ ++ +++.|+++
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ----------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 12458999999999998 44 34445544
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=71.65 Aligned_cols=88 Identities=23% Similarity=0.316 Sum_probs=63.2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 3469999999999999999998765 899999985421 2 234556666667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCC
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
|+++.+.....+ +. .++....+|.|++|+|..
T Consensus 208 v~~~~~~~v~~~---~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIGVD---IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeCCc---cC-HHHHHhhCCEEEEccCCC
Confidence 999988522111 11 112235799999999997
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00033 Score=65.36 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
...||+|||||.+|.+.|..|++.|.+|.||||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 3579999999999999999999999999999976
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.54 E-value=6.7e-05 Score=74.78 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.7
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
||||||||.||++||+.+++.| .+|+||||.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999998654
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.1e-05 Score=77.59 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=35.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
...++|+|||||+|||+||..|.+.|++|+|+|+++..+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 3468899999999999999999999999999999877643
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=74.73 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
.+++|+|||||++||++|..|++.|++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 44699999999999999999999999999999987654
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=70.51 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
....+|+|||+|.|||+||..|.+.|++|+|+|.+++++.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 34579999999999999999999999999999999887654
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00055 Score=67.00 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=61.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCc------ccHHHHHHHHH------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYATT------------ 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~------~~~~~~~~~~~------------ 292 (436)
+|+|||||++|+.+|..|++.+ .+|+++++.+ .... +.+...+.+.+
T Consensus 8 ~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~ 73 (386)
T PRK07236 8 RAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVP 73 (386)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccC
Confidence 8999999999999999999865 8899998853 2211 22322222221
Q ss_pred -------------------------------HHHh--cCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCC
Q 013810 293 -------------------------------QLSK--SGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 293 -------------------------------~l~~--~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.|.+ .+++++.+. +++++. +. +.+++|+++.+|+||.|-|..
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 74 SRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred ccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 1111 134566664 777653 23 667899999999999999976
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 154 S~ 155 (386)
T PRK07236 154 ST 155 (386)
T ss_pred ch
Confidence 64
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00028 Score=70.88 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=63.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+.+.|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCC
Confidence 4468999999999999999998765 899999985422 1 134455555667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
|+++.++....+ +.. +.....+|.||+|+|..+
T Consensus 208 v~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 208 IEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred cEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCCC
Confidence 999988632211 111 112357999999999973
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=9.1e-05 Score=75.65 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||..|+++|+.|+++|++|+|||+.+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4899999999999999999999999999999965
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.51 E-value=9e-05 Score=74.50 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~ 99 (436)
.+++|+|||||++||+||.+|++.|. +|+|+|+++.++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 35799999999999999999999998 5999999987544
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=7.9e-05 Score=73.71 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce---EEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
..+...+.+.+++.|++++.+ .|++++. +. |.+. +.++.+|.||+|+|.....++...+
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~g 265 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHhC
Confidence 355667777888899999988 4887753 33 3344 4479999999999987665544443
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.9e-05 Score=76.49 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||||.|||+||+.+++.|.+|+||||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35799999999999999999999999999999874
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00022 Score=74.37 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=64.7
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.+...+.+.+.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4468999999999999999999766 899999985321 1 234556666667788899
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.++....+ +.+.+. ...+|.||+|+|..+.
T Consensus 258 v~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 999988632221 222222 2359999999998754
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00062 Score=66.03 Aligned_cols=91 Identities=21% Similarity=0.323 Sum_probs=61.4
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-C---------cccHHHHH--------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S---------SFDDRLRH-------------- 288 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~---------~~~~~~~~-------------- 288 (436)
|+|||+|..|+.+|..|++. .++.+|.++++.+.. + ..++....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 89999999999999999853 134889999885421 1 11111100
Q ss_pred --------------------HHHHH-HHhcCCEEEec-ceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 289 --------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 289 --------------------~~~~~-l~~~gV~i~~~-~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+. +++.+..++.+ +|.+++.++|++++|+++.+|.||.|.|..+
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 01111 22223335555 5888888889999999999999999999766
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00011 Score=74.94 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||||||+|.|||+||+.+++.|.+|+||||....
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~ 51 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALD 51 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCC
Confidence 3589999999999999999999999999999997643
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=8.6e-05 Score=71.25 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~~ 100 (436)
..+|||||||.|||+||.+|.+.|+ +++|+|.+++.+.+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4589999999999999999997766 59999999876543
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.4e-05 Score=68.05 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
.++|+|||+|.+||+||+.|.++ ++|||+|.+.+.+.+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 47899999999999999999997 899999999887654
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0013 Score=64.42 Aligned_cols=51 Identities=24% Similarity=0.333 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.|++++.+. +++++. + .+++++|+++.+|+||.|.|....
T Consensus 115 l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 115 LVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 44455566677789998874 777753 3 355678888999999999999874
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=61.52 Aligned_cols=91 Identities=24% Similarity=0.369 Sum_probs=65.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|++|+-+|..|++.+ .+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 5999999999999999998755 78888887521100
Q ss_pred --------------------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcC-CcEEecceEEEecCCC
Q 013810 282 --------------------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 --------------------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~-g~~i~~D~vi~a~G~~ 334 (436)
+ ...+.+.+.+.+.+.|++++.+. ++++. ++. +.+.+ +.++.+|.||.|.|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 0 12455667777778899998884 76653 343 33343 4579999999999986
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 53
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=72.20 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||+|.+|+++|..|++.|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999764
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00011 Score=69.47 Aligned_cols=36 Identities=28% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+.+|||||||.+|+++|..|.+.|++|+|+|+....
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 368999999999999999999999999999986543
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00011 Score=69.54 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=64.9
Q ss_pred CcEEEECCchHHHHHHHhccc--------------CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhh
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT--------------SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS 128 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~--------------~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (436)
-++|||||||.|+.+|-+|+. ...+|||||..+... ... ...+.++.....
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF----------dkrl~~yae~~f 283 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF----------DKRLVEYAENQF 283 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH----------HHHHHHHHHHHh
Confidence 579999999999999999953 346799999876521 111 112223333334
Q ss_pred cCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 129 REPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 129 ~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.+.++.+..+ .|..++ ...+.+++. +|+. .+++|--||.|||..++.
T Consensus 284 ~~~~I~~~~~t~Vk~V~--~~~I~~~~~-~g~~------~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVT--EKTIHAKTK-DGEI------EEIPYGLLVWATGNGPRP 331 (491)
T ss_pred hhccceeecccEEEeec--CcEEEEEcC-CCce------eeecceEEEecCCCCCch
Confidence 5567888777 555554 345555543 4542 289999999999987764
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=65.61 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.||+++.++ +++++. ++ +++.+|+++.+|+||.|.|..+.
T Consensus 102 le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 102 IERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 33445566677799999884 777753 33 45567888999999999998764
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=9.7e-05 Score=78.49 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
++|+|||||||||+||+.|++. |++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999997 899999999875
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.9e-05 Score=74.05 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+|+|||||.+||+||..|++.|++|+|+|+++..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999988754
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=71.83 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CC-eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LY-DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~-~v~lie~~~ 95 (436)
..+||+|||||.+|+++|++|++. |. +|+|||+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 458999999999999999999985 85 899999964
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00011 Score=75.23 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||+|.|||+||+.+++.|.+|+||||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 347999999999999999999999999999998743
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=74.55 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
...||||||+|.|||+||+.+++.|.+|+|+|+.+...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 35799999999999999999999999999999987643
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00014 Score=74.49 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...||||||+|.|||+||+.+++.|.+|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999987
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0004 Score=72.38 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=65.2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+..|..|+..| .+|+++++.+.+ + .++.+..+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999866 899999986421 1 245566666667888999
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+. +.. .+.+.+ ....+|.||+|+|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999885 321 122222 23468999999998654
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=75.46 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||||.|||+||+.+++.|.+|+||||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 357999999999999999999999999999998754
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=74.51 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..||||||||.|||+||+.+++.|.+|+||||..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4799999999999999999999999999999864
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00012 Score=75.85 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++.|.+|+||||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 47999999999999999999999999999998754
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=63.76 Aligned_cols=89 Identities=25% Similarity=0.412 Sum_probs=61.7
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------------------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-------------------------------- 280 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-------------------------------- 280 (436)
|+|||+|+.|+-+|..|++.+ .+|+|+++.+...
T Consensus 2 viIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 899999999999999988654 6777776532100
Q ss_pred -------------cc-cHHHHHHHHHHHHhcCCEEEecceEEEeCC-----eEEEcCCcEEecceEEEecCCCC
Q 013810 281 -------------SF-DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 281 -------------~~-~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.. ...+.+.+.+.+.+.|++++.+++..++.+ .|.+.+|+++.+|.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00 123334455556677898886666666432 35667888899999999999655
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00013 Score=76.46 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|+|||||.+|+++|++|+++|.+|+|+|+...
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 36999999999999999999999999999999753
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00015 Score=75.23 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...||||||||.|||+||+.+++.|.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999997543
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=74.91 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+||||||||..|+++|+.|+++|++|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 458999999999999999999999999999999854
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0002 Score=73.40 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..++|+|||||++||+||.+|.+.|++|+|+|+.+..+
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 35789999999999999999999999999999987643
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00014 Score=74.88 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
||||||||.|||+||+.+++.|.+|+||||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 699999999999999999999999999998753
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00018 Score=65.80 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCEEEec-ceEEEe--CCe---EEEcCCcE--EecceEEEecCCCCc-hhc------cc--CCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTE--VPYGLLVWSTGVGPS-TLV------KS--LDLPK 346 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~---v~~~~g~~--i~~D~vi~a~G~~p~-~~~------~~--~~l~~ 346 (436)
-.+.+.+...+++.|.-+.++ +|.+.+ .++ |.+.+... +.+|..++|+|.--. -+. .+ +++.+
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi 337 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDI 337 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhccc
Confidence 466778888999999988888 466554 333 34445443 668888998885322 110 00 01111
Q ss_pred ---------------CCC----CcEEeCCCCCCC----CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 347 ---------------SPG----GRIGIDEWLRVP----SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 347 ---------------~~~----G~i~vd~~~~~t----~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
.+. =.+.+|+++|.. ...|+||||.+.++.++--. ..-...|+..|..||+.|.
T Consensus 338 ~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~e---gcGsGVaivta~~aa~qi~ 414 (421)
T COG3075 338 LQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAE---GCGSGVAIVTALHAAEQIA 414 (421)
T ss_pred ccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHh---cCCcchHHHHHHHHHHHHH
Confidence 011 116678888731 36799999999987663111 1123456777777777776
Q ss_pred hh
Q 013810 404 LL 405 (436)
Q Consensus 404 ~~ 405 (436)
..
T Consensus 415 ~~ 416 (421)
T COG3075 415 ER 416 (421)
T ss_pred HH
Confidence 43
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00015 Score=73.59 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+| ||++||+++++.|.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 4799999999 999999999999999999998764
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.005 Score=58.30 Aligned_cols=159 Identities=17% Similarity=0.168 Sum_probs=91.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc----------------------------cc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------FD 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~----------------------------~~ 283 (436)
.|+|||+|..|+-+|..|++. ++.+|+++++...... ++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~-------------~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKN-------------PNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHc-------------CCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 799999999999999999853 2378888887432100 00
Q ss_pred -----------HHHHHHHH-HHHHhcCCEEEecc-eEEEe--CC---eEEE------cC--C------cEEecceEEEec
Q 013810 284 -----------DRLRHYAT-TQLSKSGVRLVRGI-VKDVD--SQ---KLIL------ND--G------TEVPYGLLVWST 331 (436)
Q Consensus 284 -----------~~~~~~~~-~~l~~~gV~i~~~~-v~~i~--~~---~v~~------~~--g------~~i~~D~vi~a~ 331 (436)
..+...+. +.+++.||+++.+. +.++- ++ ++.+ .+ + ..+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 01111222 23334688888873 55542 22 2332 11 1 258999999999
Q ss_pred CCCCc---hh---cccCCCCCCCCC----------cEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 332 GVGPS---TL---VKSLDLPKSPGG----------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 332 G~~p~---~~---~~~~~l~~~~~G----------~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
|..+. .. +..+++...-.| ...|+..- .-+|++|++|-.+.- ..|.+.+-+....=.-.|
T Consensus 241 Gh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~--ev~pgl~~~gm~~~~--~~g~~rmgp~fg~m~~sg 316 (357)
T PLN02661 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTR--EVVPGMIVTGMEVAE--IDGSPRMGPTFGAMMISG 316 (357)
T ss_pred CCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccC--cccCCEEEeccchhh--hcCCCccCchhHhHHhhh
Confidence 97663 11 222222110011 01122222 248999999988763 234444444555556889
Q ss_pred HHHHhhhhhhcC
Q 013810 396 HLFQKPSFLLAR 407 (436)
Q Consensus 396 ~~aa~~i~~~~~ 407 (436)
+.||+-|+....
T Consensus 317 ~k~a~~~~~~l~ 328 (357)
T PLN02661 317 QKAAHLALKALG 328 (357)
T ss_pred HHHHHHHHHHHc
Confidence 999998886553
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=74.21 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++. |.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 47999999999999999999976 589999999754
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00019 Score=67.53 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~ 97 (436)
+|+||||+|+||..+|.+|++.+ .+|+|+|+.+..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccC
Confidence 58999999999999999999987 699999998753
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00017 Score=74.55 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
..||||||||.|||+||+.+++. |.+|+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 47999999999999999999997 999999998753
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=63.00 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+.|++++.+. |++++. +. +++++|+++.+|+||.|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 455666667777899999884 777753 33 56678888999999999998654
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=64.46 Aligned_cols=91 Identities=23% Similarity=0.384 Sum_probs=62.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-Cc----------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-SS---------------------------- 281 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~~---------------------------- 281 (436)
-.|+|||+|+.|+-+|..+++.+ .+|.++++.... ..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 37999999999999999998754 566666542110 00
Q ss_pred --------------c-cHHHHHHHHHHHHhcCCEEEecceEEEeC--Ce---EEEcCCcEEecceEEEecCCCC
Q 013810 282 --------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 282 --------------~-~~~~~~~~~~~l~~~gV~i~~~~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+ ...+.+.+.+.+.+.|++++..+|++++. +. +.+.+|.++.+|.||.|.|...
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 12233445556667799997667777753 33 3457788999999999999765
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00019 Score=74.77 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||||.|||.||+.+++.|.+|+|||+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 47999999999999999999999999999998654
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00067 Score=71.04 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=63.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.+++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ + .++.++.....+.+++.|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 391 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMG 391 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999866 899999985421 1 234555555567788889
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+.... ..+.+.+ ....+|.|++|+|....
T Consensus 392 v~~~~~~~v~---~~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 392 IEFELNCEVG---KDISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred eEEECCCEeC---CcCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999885211 1111111 12369999999997543
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00019 Score=73.91 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||||||+|.|||+||+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 47999999999999999999999999999998744
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00027 Score=69.76 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.++.+.+.+.++..|.+++.++ |++|. ++ +|++.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4677777778888999999995 88883 22 377889999999999999888876
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=62.72 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=33.8
Q ss_pred HHHHHHHhc-CCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 289 YATTQLSKS-GVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 289 ~~~~~l~~~-gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+. +|+++.++ +.+++. ++ +.+.+|+++.+|+||.|.|....
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 344444444 48998884 777753 33 55678888999999999997643
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=65.23 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=55.3
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc--------ccH---HHHHHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDD---RLRHYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~--------~~~---~~~~~~~~~l~~~g 298 (436)
+++|+|||+|++|+.+|..|... .+.+|+++++.+.... ..+ .+.+.+.+.+...+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~-------------~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~ 105 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKH-------------ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPN 105 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHh-------------cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCC
Confidence 35899999999999999977532 1389999999642211 112 33334444455677
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++++.+. |.. .+..++ -...+|.||+|+|..+.
T Consensus 106 v~f~gnv~VG~----Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 106 YRFFGNVHVGV----DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred eEEEeeeEecC----ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 8887442 211 111111 12368999999998864
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=71.28 Aligned_cols=62 Identities=16% Similarity=0.303 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C-e--EEE---cCC--cEEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-~--v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+...+.+.+++.|++++.++ |.+++. + . +.+ .+| .++.+|.||+|+|.....+.+.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 4667777788888999999994 888753 2 2 322 223 26899999999999887777777765
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=73.03 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhcc----cCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~----~~g~~v~lie~~~~ 96 (436)
||||||||.|||+||+.++ +.|.+|+||||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 67999999998753
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0028 Score=62.05 Aligned_cols=90 Identities=27% Similarity=0.393 Sum_probs=63.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-C-CCCc-----c----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSS-----F---------------------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~-~l~~-----~---------------------- 282 (436)
.|+|||||++|+-+|..|++.| .+|+|+++. . .... +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999865 666666664 1 1100 0
Q ss_pred ---------------------------------cHHHHHHHHHHHHhcC-CEEEecc-eEEEeCC----eEEEc-CCcEE
Q 013810 283 ---------------------------------DDRLRHYATTQLSKSG-VRLVRGI-VKDVDSQ----KLILN-DGTEV 322 (436)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~g-V~i~~~~-v~~i~~~----~v~~~-~g~~i 322 (436)
...+.+.+.+.+.+.+ |+++.+. |+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 1233445555565554 8888874 7777643 36777 99999
Q ss_pred ecceEEEecCCCC
Q 013810 323 PYGLLVWSTGVGP 335 (436)
Q Consensus 323 ~~D~vi~a~G~~p 335 (436)
.||+||-|-|...
T Consensus 150 ~a~llVgADG~~S 162 (387)
T COG0654 150 DADLLVGADGANS 162 (387)
T ss_pred ecCEEEECCCCch
Confidence 9999999999654
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00024 Score=72.83 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=38.0
Q ss_pred CcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 350 G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|.|.||.+++ |++|++||+|||+... ......|+-.|+.|++++..+
T Consensus 357 Ggi~~d~~~~-t~i~gl~a~Ge~~~~~--------~~~~~~~~~~G~~a~~~~~~~ 403 (554)
T PRK08275 357 SGVWVNEKAE-TTVPGLYAAGDMASVP--------HNYMLGAFTYGWFAGENAAEY 403 (554)
T ss_pred CcEEECCCCc-cCCCCEEECcccCCch--------hHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999 9999999999997531 355667888888888887654
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00029 Score=70.76 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcC-CEEEecc-eEEEeC--Ce---EEEc---CCc--EEecceEEEecCCCCchhcccCCCC
Q 013810 284 DRLRHYATTQLSKSG-VRLVRGI-VKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~i~~~~-v~~i~~--~~---v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
..+.+.+.+.+++.| ++++.++ |++++. ++ +.+. +|+ ++.+|.||+|+|.....+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456677777788876 8999985 877753 32 4432 353 6899999999999887777777665
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0025 Score=62.84 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 289 YATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 289 ~~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.|++++.+ ++.+++. ++ |.+.+|+++.+|+||.|.|....
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3444555668888877 4777643 33 56678888999999999998653
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0004 Score=71.03 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
..+||||||+| +|++||+.+++.|.+|+||||.+.+...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 36899999999 8999999999999999999998765443
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00028 Score=72.21 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||+|.||++||+.+++.|.+|+|||+.+..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987543
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0031 Score=61.81 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=31.7
Q ss_pred hcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
..|++++.+. +.+++. + .|.+++|+++.+|+||.|.|....
T Consensus 123 ~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred CCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 3589999884 777643 3 366678889999999999998764
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00051 Score=65.66 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=28.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~ 97 (436)
..++|+|||||.++..++..|.+.+. +|++|-++..+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 45899999999999999999988654 79999887643
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0026 Score=64.63 Aligned_cols=88 Identities=25% Similarity=0.358 Sum_probs=61.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC------Cc---------------c-------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL------SS---------------F------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l------~~---------------~------- 282 (436)
.|+|||||+.|++.|..+++.| .+|.|+++.. .+ +. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 6999999999999999999866 7788887641 11 00 0
Q ss_pred --------------------------c-HHHHHHHHHHHHhc-CCEEEecceEEEe--CC---eEEEcCCcEEecceEEE
Q 013810 283 --------------------------D-DRLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (436)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~~-gV~i~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~ 329 (436)
+ ..+...+.+.+.+. |++++.+.+.++. ++ +|.+.+|.++.|+.||+
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 0 01122333444444 7888777776663 33 47788899999999999
Q ss_pred ecCC
Q 013810 330 STGV 333 (436)
Q Consensus 330 a~G~ 333 (436)
|+|.
T Consensus 152 ATGT 155 (618)
T PRK05192 152 TTGT 155 (618)
T ss_pred eeCc
Confidence 9994
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00085 Score=60.34 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC------CeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g------~~v~lie~~~ 95 (436)
+.++|+|||||..|+.+|++|.+.+ ++|+|||...
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 3489999999999999999999866 7899999653
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00042 Score=63.29 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
.|++|||+|.+|+.+|..|++.|.+|.|||+.++.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIG 37 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIG 37 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCC
Confidence 689999999999999999999999999999998743
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00033 Score=71.70 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=39.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|.|.||.+.| |.+|++||+|+|++... |. ..-......|+..|++|++++..+.
T Consensus 348 ~GGi~vd~~~~-t~IpGLyAaGE~~gg~h--G~~rlgG~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 348 MGGIRINEDCE-TNIPGLFACGEVAGGVH--GANRLGGNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred cCCEEECCCCc-ccCCCeEeccccccCCC--CCCccchhhhhhhHHHHHHHHHHHHHHh
Confidence 46699999999 89999999999975321 11 1112345578889999999987653
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0044 Score=60.59 Aligned_cols=51 Identities=16% Similarity=0.164 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcC-CEEEecceEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSG-VRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~g-V~i~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.+ ++++..++++++. + .|.+.+|+++.+|.||.|.|....
T Consensus 113 l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 113 IERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 3445555666666 8888335777642 3 356678888999999999998654
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00043 Score=71.02 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||+|||+|.||++||+.+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3589999999999999999999999999999987654
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00038 Score=70.19 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+||+|||+||+|+.+|..|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 589999999999999999999999999999987654
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0039 Score=61.08 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=30.8
Q ss_pred cCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+++++.++ |++++. ++ |.+++|+++.+|+||-|-|....
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 368888884 777753 33 56789989999999999997554
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.003 Score=61.45 Aligned_cols=91 Identities=20% Similarity=0.393 Sum_probs=62.5
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--Cc----------c------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SS----------F------------------ 282 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~~----------~------------------ 282 (436)
|+|||+|++|+-+|..|.+. +.+.+|.++++.+.. +. .
T Consensus 2 viIvGaGpAGlslA~~l~~~------------~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA------------RPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc------------CCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 89999999999999999332 134788888764211 10 0
Q ss_pred ----------------cHHHHHHHHHHHHhcCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCC
Q 013810 283 ----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 283 ----------------~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
...+.+.+.+.+.+.++.++..+|.+|+.. .|++++|+++.++.||-|.|..+
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 123344455555555666666668888653 35788999999999999999654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00048 Score=76.46 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
+...||||||+|.||++||+.+++.|.+|+|+||.+...
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 456899999999999999999999999999999986553
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0033 Score=54.46 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHH-Hhhh--cCCCCccEEEEEeCCCCCCcc-----cHHHHHHHHHHHHhcCCEEEe
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDV-RQRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~-~~~~--~~~~~~~~V~lv~~~~~l~~~-----~~~~~~~~~~~l~~~gV~i~~ 303 (436)
+|+|||+|+.+...|.++++.--+.+ .+-+ ....++-+.+--..-+-+|.| ++++.+.+++.-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 89999999999999998876320000 0000 111223333332221223333 468888888899999999999
Q ss_pred cceEEEeCC--e-EEEcCCcEEecceEEEecCCCCc
Q 013810 304 GIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 304 ~~v~~i~~~--~-v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+|.+++-. - ..++|.+.+.+|.||+|+|....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 988777643 2 33457778999999999998764
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0011 Score=70.45 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.2
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
..+++|+|||+|+.|+.+|..|+..| .+|+++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 45679999999999999999999765 999999974
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00045 Score=71.24 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..||||||||.|||+||+.+++. .+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 47999999999999999999976 8999999874
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00073 Score=59.90 Aligned_cols=90 Identities=26% Similarity=0.307 Sum_probs=63.4
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec--------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-------- 304 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-------- 304 (436)
.+|||||..|+.+|..|+.+. +..+|.|+..+++.... .-.+.+.+++++..|+=...
T Consensus 2 fivvgggiagvscaeqla~~~------------psa~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred eEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccHH
Confidence 589999999999999999864 55799999887654322 22233445555544432111
Q ss_pred ----ceEEEe--CCeEEEcCCcEEecceEEEecCCCCc
Q 013810 305 ----IVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 305 ----~v~~i~--~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|..++ +..+.+.+|.++.++.+++|+|.+|-
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 122222 36789999999999999999999996
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=68.15 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=63.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
.+.++|+|||+|+.|+..|..|.+.+ .+|+++++.+.. + .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45578999999999999999998766 899999885422 1 13345555556678889
Q ss_pred CCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
||+++.++....+ +.+++ ....+|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~~---~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGKD---IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCCc---CCHHH-HHhcCCEEEEEcCcCC
Confidence 9999988522111 11111 2357999999999764
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0049 Score=62.54 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEE---cCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~---~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+.|++++.++ +.+++. +. +.+ .+++++.+|.||.|.|...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 34556667777899999984 777753 33 334 4556899999999999765
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00035 Score=72.09 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=38.5
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.|.+|.+.+ |++|++||+|+|++.. .|. +.-......+.-.|+.|++++..+
T Consensus 370 ~gG~~~d~~~~-t~i~gL~a~Ge~~~~~--hg~nrl~~~sl~~~~v~g~~Ag~~aa~~ 424 (603)
T TIGR01811 370 MGGLWVDYDQM-TNIPGLFAAGECDFSQ--HGANRLGANSLLSAIADGYFALPFTIPN 424 (603)
T ss_pred CCCeeECCCCc-ccCCCEEECcccccCc--CCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999 9999999999997531 121 111234566778888888887654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00057 Score=71.89 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
...+|+|||||++||+||..|++.|++|+|+|+.+..+.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 3579999999999999999999999999999998875443
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00065 Score=69.84 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
..+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 34899999999999999999999 8999999999853
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0007 Score=67.30 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
...||+|||||..|+.+|..++.+|++|+|+|+.+.-
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCccc
Confidence 5689999999999999999999999999999998653
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0062 Score=59.64 Aligned_cols=51 Identities=25% Similarity=0.370 Sum_probs=36.2
Q ss_pred HHHHHHHHHH-hcCCEEEecc-eEEEeC--C----eEEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLS-KSGVRLVRGI-VKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~-~~gV~i~~~~-v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. ..|++++.++ +++++. + .|.+++|+++.+|+||-|.|....
T Consensus 108 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 108 LRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 3444455554 3479999884 777753 2 367788999999999999997653
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0057 Score=61.95 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEc--CC-cEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILN--DG-TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~--~g-~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.|++++.+. +.+++ ++++ .+. +| +++.+|+||.|.|....
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 44555666777899999884 77764 3333 333 45 47999999999998763
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00052 Score=69.67 Aligned_cols=37 Identities=27% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||||||||.|||.||..+++.|.+|+|+||....
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 4589999999999999999999999999999976543
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0055 Score=59.59 Aligned_cols=40 Identities=8% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|++++.++ +++++. + .|.+++|+++.+|+||-|-|....
T Consensus 117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 578888874 777753 3 366789999999999999998765
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00061 Score=64.63 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe--EEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~--v~lie~~~~~~~ 99 (436)
..++|+|+|||.+||++|++|++.+.+ |+|+|.+++.+.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 357899999999999999999997766 567999887543
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00085 Score=69.12 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||+|.+|++||..+++.|.+|+|||+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987654
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=58.59 Aligned_cols=34 Identities=26% Similarity=0.273 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.|||||+|.|||+|+..+-..+-.|+|+|+...+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCc
Confidence 5999999999999999999887779999977544
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.00091 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||+|||+|.||++||..+++.|.+|+|||+.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999997654
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0057 Score=58.69 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEc---CCc--EEecceEEEecCCCCc
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILN---DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~---~g~--~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+++.|++++.+. +..++ .+++ .+. +|+ ++.+|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 455566666777788888884 65553 3332 222 343 6899999999998764
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.004 Score=63.14 Aligned_cols=130 Identities=22% Similarity=0.250 Sum_probs=74.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-----------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------------------------- 280 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~----------------------------- 280 (436)
|+|+|||+|++|+-.|..|.+.| .+++++++.+ +..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 48999999999999999998765 8899988842 110
Q ss_pred --cc-----------cHHHHHHHHHHHHhcCC--EEEecc-eEEEeC-------C--eEEEc-CCc--EEecceEEEecC
Q 013810 281 --SF-----------DDRLRHYATTQLSKSGV--RLVRGI-VKDVDS-------Q--KLILN-DGT--EVPYGLLVWSTG 332 (436)
Q Consensus 281 --~~-----------~~~~~~~~~~~l~~~gV--~i~~~~-v~~i~~-------~--~v~~~-~g~--~i~~D~vi~a~G 332 (436)
.+ ..++.++++.+.+..++ .+..++ |.+++. + .|++. +|+ +..+|.|++|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 01 14577788888777766 355563 666642 1 25554 343 457899999999
Q ss_pred CCCchhcc---cCCCCCCCCCcEEeCCCCCC---CCCCCEEEecccccc
Q 013810 333 VGPSTLVK---SLDLPKSPGGRIGIDEWLRV---PSVQDVFAVGDCSGY 375 (436)
Q Consensus 333 ~~p~~~~~---~~~l~~~~~G~i~vd~~~~~---t~~~~Vya~GD~~~~ 375 (436)
.-..+... --|++. =.|.+.=-..++. -..++|-++|-..+.
T Consensus 148 ~~~~P~~P~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg 195 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNSG 195 (531)
T ss_dssp SSSCESB-----CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHHH
T ss_pred CcCCCCCChhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHhH
Confidence 75432121 123321 1354443222331 135679999976653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=63.30 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||||.+|+++|..|++.| .+|+|+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999876 999999974
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0012 Score=72.19 Aligned_cols=38 Identities=18% Similarity=0.447 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..++|+|||||++|+++|..|++.|++|+|||+.+.++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 34789999999999999999999999999999987643
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=57.93 Aligned_cols=52 Identities=21% Similarity=0.255 Sum_probs=34.9
Q ss_pred HHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcccCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (436)
.+++.|++++.++ |.+++. + .|.+.+| ++.+|.||+|+|.....+.+.++++
T Consensus 158 ~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 158 LIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred HHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 3445678887773 666642 2 2444555 6999999999999876666555543
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0025 Score=65.56 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=61.3
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (436)
..+++|+|||+|++|+.+|..|++.+ .+|+++++.+.+ + .++.+..+.-.+.+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 44569999999999999999998766 789999974322 1 23344445455567788
Q ss_pred CCEEEecc-e-EEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-V-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v-~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|++++.+. + .++.... ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 99998874 3 2221111 11248999999998654
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0076 Score=60.13 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHhcCCEEEecceEEEe--CC----eEEEcCCcEEecceEEEecCCCC
Q 013810 290 ATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+...+.||+++.++|.++. ++ .|.+++|+++.+|++|=|+|++.
T Consensus 160 L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 334455789999999876653 22 47788999999999999999854
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0098 Score=58.01 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcC-CEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKSG-VRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~g-V~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+ ++++.+. |++++. ++ +.+++|+++.+|+||.|.|....
T Consensus 109 ~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 109 QQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 344455555666 8888874 777753 33 56678888999999999997643
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0094 Score=59.12 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCCcEEecceEEEecCCCC
Q 013810 287 RHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 287 ~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+.+.+++.|++++.++ |.++. ++.+ ...+|.++.+|.||.|.|...
T Consensus 111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 3456666677899999884 77764 3333 335677899999999999743
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0083 Score=60.99 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=34.7
Q ss_pred HHHHHHHhc-CCEEEecceEEEe---CC---eEEEcCCcEEecceEEEecCCCC
Q 013810 289 YATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 289 ~~~~~l~~~-gV~i~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+.+++. ++.++.+.+.++. ++ +|.+.+|.++.||.||+|+|...
T Consensus 101 ~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 101 AMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 444555555 8899888766652 22 47788898999999999999773
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.02 Score=56.98 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=77.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCC-CC--------C--------------c--c---
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE-IL--------S--------------S--F--- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~-~l--------~--------------~--~--- 282 (436)
+|+|||+|.+|+-+|..|.+.+ .. +.++++.. +. + . +
T Consensus 10 ~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~ 75 (443)
T COG2072 10 DVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWD 75 (443)
T ss_pred cEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCc
Confidence 7999999999999999999876 33 66666531 10 0 0 1
Q ss_pred -----cHHHHHHHHHHHHhcCCEEEec---ceE--EEeCC----eEEEcCCcE--EecceEEEecCCCCchhcccC-CCC
Q 013810 283 -----DDRLRHYATTQLSKSGVRLVRG---IVK--DVDSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL-DLP 345 (436)
Q Consensus 283 -----~~~~~~~~~~~l~~~gV~i~~~---~v~--~i~~~----~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~~-~l~ 345 (436)
......++.+.+++.++..... .|. +.+.+ .|.+++|.+ +.+|.||+|+|.--.+.+..+ |++
T Consensus 76 ~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~ 155 (443)
T COG2072 76 EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLD 155 (443)
T ss_pred ccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCcc
Confidence 1226778888898888776543 233 33332 366667655 559999999998443322222 222
Q ss_pred CCCCCcEEeCCC---CCCCCCCCEEEecccccc
Q 013810 346 KSPGGRIGIDEW---LRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 346 ~~~~G~i~vd~~---~~~t~~~~Vya~GD~~~~ 375 (436)
+-.|.+.=-.+ .+.-..++|-+||--++.
T Consensus 156 -~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 156 -EFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred -CCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 11333221111 111356789999976653
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.01 Score=58.10 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhc-CCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. |++++.+ ++.+++. +. |.+++|+++.+|+||.|.|....
T Consensus 114 l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 114 LQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 334455555555 8999877 4777643 33 56678888999999999998654
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0081 Score=58.41 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=28.0
Q ss_pred CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+++.++ +++++. + .|.+++|+++.+|+||-|-|....
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 34567663 777743 2 356678889999999999996543
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=59.85 Aligned_cols=50 Identities=14% Similarity=0.306 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+++.|++++.+. +++++. ++ +.+.+|+++.+++||.|.|...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 33445566777899999984 877753 33 4456778899999999999754
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.011 Score=58.40 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHhc-CCEEEec-ceEEEeC--Ce--EEEcC-C--cEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRG-IVKDVDS--QK--LILND-G--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~-~v~~i~~--~~--v~~~~-g--~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. +|+++.+ ++.+++. +. |.+.+ + .++.+|+||.|.|....
T Consensus 125 ~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 125 EALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3344444443 7888877 4777743 33 45543 2 36999999999997653
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.014 Score=57.34 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=33.9
Q ss_pred HHHHHHHHhc-CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. +|+++.+. +.+++. + .+.+.+|+++.+|+||-|-|....
T Consensus 115 ~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 115 YALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 3344444443 78888774 776643 2 355678889999999999997653
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00065 Score=58.18 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~ 98 (436)
..||+|||+|-|||+||+.+++ .+.+|.|||.+-..+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 3589999999999999999974 678899999875533
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=49.21 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=26.4
Q ss_pred CCEEE--ecceEEEeC--C--eEEEcCCcEEecceEEEecCC
Q 013810 298 GVRLV--RGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 298 gV~i~--~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+|++. ..+|.+++. + .+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 54443 345776653 2 477789999999999999996
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=56.86 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=32.8
Q ss_pred HHHHHHHHHHh-cCCEEEecc-eEEEeC--Ce--EEE---cCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSK-SGVRLVRGI-VKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~~-v~~i~~--~~--v~~---~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+ .+++++.++ +++++. ++ +++ .+++++.+|+||-|-|...
T Consensus 109 l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 109 LQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 33445555544 379999884 777754 33 333 3345799999999999764
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=57.43 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+|+++.+ ++++++. + .|.+++|+++.+|+||.|.|...
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 6888777 4766642 2 46678898999999999999754
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=57.18 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=30.2
Q ss_pred CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++++.+. +.+++. + .+.+++|+++.+|+||.|.|....
T Consensus 125 ~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 125 NLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 67787773 776643 3 467788999999999999998765
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0027 Score=65.23 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|++|||||.||+.+|.+|++ +.+|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 689999999864
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.027 Score=55.56 Aligned_cols=90 Identities=24% Similarity=0.281 Sum_probs=58.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC-----C--------c---------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-----S--------S--------------- 281 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l-----~--------~--------------- 281 (436)
++|+|||+|++|+-.|..|.+.+ .++++++|.+ +. + .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 48999999999999999998765 6777777642 10 1 0
Q ss_pred -------------cc--HHHHHHHHHHHHhcCCE--EEecc-eEEEeCC-----eEEEcCC----cEEecceEEEecCCC
Q 013810 282 -------------FD--DRLRHYATTQLSKSGVR--LVRGI-VKDVDSQ-----KLILNDG----TEVPYGLLVWSTGVG 334 (436)
Q Consensus 282 -------------~~--~~~~~~~~~~l~~~gV~--i~~~~-v~~i~~~-----~v~~~~g----~~i~~D~vi~a~G~~ 334 (436)
++ .++.+++....+..++. +..+. +.+++.. .|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 01 14556677777766653 33332 4444321 3555443 367899999999987
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.025 Score=55.17 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred HHHHHHHHHHh-cCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSK-SGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+.+ .|++++.+ ++++++. ++ +.+++|+++.+|+||.|.|...
T Consensus 107 l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 107 LGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 44555556666 48999987 4877743 33 5667888899999999999764
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.018 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.4
Q ss_pred CCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 364 QDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+++..+||+++...+ +| .-+..|+..|+.||+.|..
T Consensus 270 ~~~llvGDAAg~v~P~tG-----eGI~~A~~sg~~aa~~i~~ 306 (398)
T TIGR02028 270 GRVALVGDAAGYVTKCSG-----EGIYFAAKSGRMCAEAIVE 306 (398)
T ss_pred CCEEEEEcCCCCCCcccc-----cchHHHHHHHHHHHHHHHH
Confidence 679999999997553 33 2356788999999988864
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0076 Score=58.27 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc--------ccHH------HHHHHHHHH
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FDDR------LRHYATTQL 294 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~--------~~~~------~~~~~~~~l 294 (436)
-.++++|||||.+|++.|.+|+..| .+|+|++..+.+.. |+.. +.-.+.+.-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~ 188 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVS 188 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhc
Confidence 3468999999999999999999877 99999999653321 1111 112223333
Q ss_pred HhcCCEEEecc-eEEEe
Q 013810 295 SKSGVRLVRGI-VKDVD 310 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~ 310 (436)
...+|++++.. |++++
T Consensus 189 ~hp~i~l~TyaeV~ev~ 205 (622)
T COG1148 189 NHPNIELITYAEVEEVS 205 (622)
T ss_pred cCCceeeeeeeeeeeec
Confidence 44578888774 77654
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.023 Score=55.34 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||||.+|+-+|..|++.+ .+|+|+++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g--------------~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHG--------------KKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 5999999999999999999765 789999984
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.026 Score=55.54 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=33.0
Q ss_pred HHHHHHHHHHh-cCCEEEec-ceEEEe--CCe---EEE--cCCc-EEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSK-SGVRLVRG-IVKDVD--SQK---LIL--NDGT-EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~-~gV~i~~~-~v~~i~--~~~---v~~--~~g~-~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+ .||+++.+ ++.++. ++. |.+ .+|+ ++.+|+||.|.|....
T Consensus 110 l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 110 FLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH
Confidence 33444455544 38999887 477664 233 333 3564 7999999999998653
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.024 Score=55.45 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=30.9
Q ss_pred HHHHHHHHhc-CCEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~-gV~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+. ++. +.+ +|.+++. + .|++++|+++.+|+||.|.|....
T Consensus 115 ~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 115 RALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 3344444444 455 444 4666642 3 355678888999999999998653
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0036 Score=61.94 Aligned_cols=87 Identities=23% Similarity=0.347 Sum_probs=64.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcCCE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSGVR 300 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~gV~ 300 (436)
++|+|||+|+.|+.+|..|++.+ .+|+++++.+.. | .++.++.+...+.|++.||+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 59999999999999999999876 999999885321 1 24567778888899999999
Q ss_pred EEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 301 i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+.+. +- . .+.+++ ..-++|.|++++|..-.
T Consensus 190 ~~~~~~vG-~---~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 190 FKLNVRVG-R---DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred EEEcceEC-C---cCCHHH-HHHhhCEEEEeccccCC
Confidence 99884 32 1 111111 12345999999996543
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0031 Score=57.99 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+|+|||+|.|||-||.+|+..|.+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 35799999999999999999999999999999764
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0083 Score=56.88 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=31.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.||..|.-|++.|++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999997643
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0082 Score=63.47 Aligned_cols=89 Identities=20% Similarity=0.322 Sum_probs=64.8
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C---C----C--cccHHHHHHHHHHHHhc
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----S--SFDDRLRHYATTQLSKS 297 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~---l----~--~~~~~~~~~~~~~l~~~ 297 (436)
+.+++|+|||+|+.|+-+|..|.+.| ..|++.+|.+ + + | .++..+.+.-.+.|.+.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~e 1848 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQE 1848 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhh
Confidence 45689999999999999999998876 8999999953 2 1 2 24555566666788999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
||+|++++ |..- ..-|+-.-+.|.|++|+|..-
T Consensus 1849 gi~f~tn~eigk~-----vs~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1849 GIRFVTNTEIGKH-----VSLDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred CceEEeecccccc-----ccHHHHhhccCeEEEEeCCCC
Confidence 99999884 3211 112333456799999999754
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.018 Score=56.40 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+++.+||+++...+.. ..-+..|+..|..||+.|...
T Consensus 264 ~~v~lvGDAAg~v~P~t----G~GI~~A~~sg~~aa~~i~~~ 301 (388)
T TIGR02023 264 GRAMLVGDAAGLVTPAS----GEGIYFAMKSGQMAAQAIAEY 301 (388)
T ss_pred CCEEEEeccccCcCCcc----cccHHHHHHHHHHHHHHHHHH
Confidence 56999999999755311 223567888898888888653
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.025 Score=55.08 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHhc-CCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKS-GVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~-gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+. +++++.+. +.++.. + .+.+.++ ++.+|+||-|-|....
T Consensus 107 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 107 KKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 34444444444 37777663 666532 2 3556565 8999999999997654
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0036 Score=63.58 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=63.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
...+-+|||||-=||.||..|...|.+++++.-.+...-. +.+. .-..++.......++.++.+..
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMer---------QLD~-----~ag~lL~~~le~~Gi~~~l~~~ 209 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMER---------QLDR-----TAGRLLRRKLEDLGIKVLLEKN 209 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHH---------hhhh-----HHHHHHHHHHHhhcceeecccc
Confidence 3456899999999999999999999999999765542111 1111 0111111223345777766533
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+.--.....+......+|+ .+.+|-+|.|+|.+|+.
T Consensus 210 t~ei~g~~~~~~vr~~DG~--------~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 210 TEEIVGEDKVEGVRFADGT--------EIPADLVVMAVGIRPND 245 (793)
T ss_pred hhhhhcCcceeeEeecCCC--------cccceeEEEeccccccc
Confidence 2211112223322334777 89999999999999875
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.032 Score=54.85 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeE--EEcCC---cEEecceEEEecCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKL--ILNDG---TEVPYGLLVWSTGV 333 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v--~~~~g---~~i~~D~vi~a~G~ 333 (436)
..+.+.+.+.+.+.+++++.+. +.+++. +++ .+.++ +++.+|+||-|-|.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 3456667777788899998884 777643 344 44543 57999999999995
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.035 Score=55.37 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 363 VQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 363 ~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.++++.+||+++..++ +| .-+..|+..|++||+.|...
T Consensus 308 ~~~vlLvGDAAg~v~P~tG-----eGI~~Am~sg~~AAe~i~~~ 346 (450)
T PLN00093 308 RGRVALVGDAAGYVTKCSG-----EGIYFAAKSGRMCAEAIVEG 346 (450)
T ss_pred CCCcEEEeccccCCCcccc-----ccHHHHHHHHHHHHHHHHHH
Confidence 3578899999987553 33 23567889999999888753
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0027 Score=64.86 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
|+||||||.||+.+|.+|++.+ ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999987 79999999864
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.026 Score=57.82 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhc-CCEEEecc-eEEEeC--Ce--EEEc--CC--cEEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~~-v~~i~~--~~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. |++++.+. +++++. ++ +.++ +| +++.+|+||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 344455555554 89999884 887753 33 3444 56 46999999999997653
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.013 Score=64.19 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=61.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
.++|+|||+|+.|+.+|..|++.|. .|+|+|..+.. .. . +. . ..+..++.++.+ .
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-----~~-~-------------l~---~-~L~~~GV~i~~~~~ 373 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-----SP-E-------------AR---A-EARELGIEVLTGHV 373 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch-----hH-H-------------HH---H-HHHHcCCEEEcCCe
Confidence 4789999999999999999999995 58999876431 00 0 01 1 123457777765 5
Q ss_pred eEeEeCCCC--EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 140 CAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 140 v~~id~~~~--~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+..+..+.+ .+.+... ++. ..++.+|.|+++.|..|+.
T Consensus 374 v~~i~g~~~v~~V~l~~~-~g~------~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 374 VAATEGGKRVSGVAVARN-GGA------GQRLEADALAVSGGWTPVV 413 (985)
T ss_pred EEEEecCCcEEEEEEEec-CCc------eEEEECCEEEEcCCcCchh
Confidence 666765443 2333311 121 1278999999999988754
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0039 Score=63.55 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+||||+|.||...|..|++.|.+|+|+|...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 346899999999999999999999999999999885
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.036 Score=55.58 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHhcCCEEEecc-eEEEeCCe---EEEcCCcEEecceEEEecCCCCc
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+++.|++++.++ |.+++.+. |.+.+| ++.+|.||+|+|....
T Consensus 190 ~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 190 RRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEccccccc
Confidence 334456677777774 66665432 455555 6899999999995533
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.035 Score=55.26 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcC---CEEEecc-eEEEe---------CC--eEEEcCCcEEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKSG---VRLVRGI-VKDVD---------SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~g---V~i~~~~-v~~i~---------~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+.+ |+++.+. +.+++ ++ .|.+.+|+++.+|+||-|-|....
T Consensus 120 ~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 120 QNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 344455555554 8888884 77774 12 466788999999999999998654
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0064 Score=56.32 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=63.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
..+|++|||||+-++..|--++-.|.++.|+=|.+.. +.+. ...+.+.........+++++.. .
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kv---------LR~F------D~~i~~~v~~~~~~~ginvh~~s~ 252 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKV---------LRGF------DEMISDLVTEHLEGRGINVHKNSS 252 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchh---------hcch------hHHHHHHHHHHhhhcceeeccccc
Confidence 4589999999999999999999999999888776542 1111 1112222222234456777654 4
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
++.+........+.-...+. ....|.|+.|+|-.|+...
T Consensus 253 ~~~v~K~~~g~~~~i~~~~~--------i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 253 VTKVIKTDDGLELVITSHGT--------IEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred ceeeeecCCCceEEEEeccc--------cccccEEEEEecCCCCccc
Confidence 44444332221111122443 4459999999998876643
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.034 Score=55.20 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCEEEec-ceEEEe--CCeEE--EcCCcEEecceEEEecCCC
Q 013810 286 LRHYATTQLSKSGVRLVRG-IVKDVD--SQKLI--LNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~-~v~~i~--~~~v~--~~~g~~i~~D~vi~a~G~~ 334 (436)
+.+.+.+.+++.|++++.+ +|+++. ++.+. ..++.++.+|.||.|.|..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 3345666677789999988 477764 23432 2345679999999999964
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0042 Score=48.15 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|..-+..|.+.|.+|+||.++
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3578999999999999999999999999999886
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.041 Score=53.92 Aligned_cols=47 Identities=30% Similarity=0.352 Sum_probs=32.2
Q ss_pred HHHHHHh-cCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc
Q 013810 290 ATTQLSK-SGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 290 ~~~~l~~-~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+ .|++++.+ ++.++.. ++ |.+++|.++.+|.||.|.|....
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 3334434 47888877 4777643 32 55678888999999999997653
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.042 Score=53.88 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEeC---C--eEEE-cCCc--EEecceEEEecCCCCc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVDS---Q--KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~~---~--~v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (436)
+.+.+...+.|++++.+. +++++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 107 ~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 107 RDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344444566789999884 666643 2 3555 4664 6899999999997653
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.049 Score=55.24 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|++|+-+|..|.+.. ...+|+|+++.
T Consensus 3 ~IAIIGgGp~Gl~~a~~L~~~~------------~~l~V~lfEp~ 35 (534)
T PRK09897 3 KIAIVGAGPTGIYTFFSLLQQQ------------TPLSISIFEQA 35 (534)
T ss_pred eEEEECCcHHHHHHHHHHHhcC------------CCCcEEEEecC
Confidence 7999999999999999997632 23577777773
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.04 Score=56.63 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhc-CCEEEecc-eEEEeC--CeEE--E--cCCc-EEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKS-GVRLVRGI-VKDVDS--QKLI--L--NDGT-EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~~-v~~i~~--~~v~--~--~~g~-~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.+. +++++.++ +++++. +.+. + .+|+ ++.+|+||.|.|....
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 334455555554 79999884 777753 3332 3 3454 6999999999997654
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0026 Score=63.20 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.4
Q ss_pred EECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 67 IIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
|||+|.||++||..+++.|.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999764
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0031 Score=58.09 Aligned_cols=101 Identities=20% Similarity=0.226 Sum_probs=63.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe----
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS---- 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 138 (436)
-+-+|||||+.+|.||-.|+-.|++|++.=|+- .+.|. ..+..++....+...++.|...
T Consensus 199 GkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI----------~LrGF------Dqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 199 GKTLVVGAGYVALECAGFLKGFGYDVTVMVRSI----------LLRGF------DQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred CceEEEccceeeeehhhhHhhcCCCcEEEEEEe----------ecccc------cHHHHHHHHHHHHHhCCceeecccce
Confidence 478999999999999999999999998876641 11111 1223333344456678887665
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+|..++...-.|.......++ +-+-.||.+++|.|-.+...
T Consensus 263 ~Veq~~~g~l~v~~k~t~t~~------~~~~~ydTVl~AiGR~~~~~ 303 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTNTGE------EGEEEYDTVLWAIGRKALTD 303 (503)
T ss_pred eeeeccCCcEEEEeecccccc------cccchhhhhhhhhccccchh
Confidence 455555433233333222222 11557999999999876543
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0031 Score=57.64 Aligned_cols=99 Identities=23% Similarity=0.446 Sum_probs=61.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--C-CCcc---cHHHHHHHH-----HHHHhcCCE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--I-LSSF---DDRLRHYAT-----TQLSKSGVR 300 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~-l~~~---~~~~~~~~~-----~~l~~~gV~ 300 (436)
+|+|||||.-|+-+|..+.+.. +.-+|-+++..+ . -|.+ +..+...-. ..+--.|.+
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl------------~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~ 108 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKL------------GSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGAT 108 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhc------------CCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcH
Confidence 7999999999999999887643 236788888742 1 1211 111111000 001111222
Q ss_pred EEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc-hhcccC
Q 013810 301 LVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSL 342 (436)
Q Consensus 301 i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~ 342 (436)
.+..+|.++++ +.|.+.+|++|.+|.+|+|.|..-+ .-++.+
T Consensus 109 wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 109 WIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred HHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 22234666654 6799999999999999999998876 334333
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.037 Score=54.37 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
++.+.+.+.+++.|++++.+. +.+++. +. +.+ +++++.+|.||+|+|...
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 344455556667788888884 777643 22 333 566799999999999743
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.039 Score=54.50 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=26.4
Q ss_pred CEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCC
Q 013810 299 VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 299 V~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.++.+ +|++++. + .+.+++|+++.+|+||.|.|...
T Consensus 118 ~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 345555 3666643 3 36668888999999999999764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.011 Score=56.03 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=62.7
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEE-EEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVV-CVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
.++.|-|||+|+-|-..|..|++ .|.+|. ||+.+.. ...++. +.+.+..-.-.+..++.+
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n------m~kiLP---------eyls~wt~ekir~~GV~V 410 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN------MEKILP---------EYLSQWTIEKIRKGGVDV 410 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC------hhhhhH---------HHHHHHHHHHHHhcCcee
Confidence 34789999999999998888876 455654 4544321 111111 111111111123457777
Q ss_pred EEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 136 FLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 136 ~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.. .|.++......+.++ +.+|. ++..|.+|+|+|..|+..
T Consensus 411 ~pna~v~sv~~~~~nl~lk-L~dG~--------~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 411 RPNAKVESVRKCCKNLVLK-LSDGS--------ELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred ccchhhhhhhhhccceEEE-ecCCC--------eeeeeeEEEEecCCCchh
Confidence 665 666666555555443 45887 899999999999998764
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0099 Score=54.92 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~ 97 (436)
.+.+|||||||-.|.+.|..|++ .|++|+|+|+++.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 45799999999999999999964 57999999998754
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.069 Score=52.41 Aligned_cols=90 Identities=21% Similarity=0.369 Sum_probs=59.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----C--------------cc----------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----S--------------SF---------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----~--------------~~---------- 282 (436)
.|+|||+|++|.-+|..|++.| .+|.++++.... . ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 6999999999999999999865 677777663110 0 00
Q ss_pred -----------------------cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE---EEcCCcEEecceEEEecCC
Q 013810 283 -----------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL---ILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 283 -----------------------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v---~~~~g~~i~~D~vi~a~G~ 333 (436)
-..+.+++.+..++.|++++.++ +..+. ++++ +..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 01233445556667788888874 55553 2222 2233368999999999996
Q ss_pred CC
Q 013810 334 GP 335 (436)
Q Consensus 334 ~p 335 (436)
..
T Consensus 151 ~s 152 (396)
T COG0644 151 NS 152 (396)
T ss_pred ch
Confidence 54
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.046 Score=53.18 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.0
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~ 95 (436)
.++|||+||||..|.+.+..|++ ...+|.|+||-+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~ 38 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLD 38 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 35899999999999999999987 456899999653
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.071 Score=52.23 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe-----CCeEEEc-CCc--EEecceEEEecCCCCc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD-----SQKLILN-DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~-----~~~v~~~-~g~--~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+.|+.++.+. ++.+. ...|.+. +|+ ++.+|+||-|-|....
T Consensus 107 ~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 107 RDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 344455556677777763 44442 2357775 775 6899999999997653
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.0094 Score=52.51 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||||..|...+..|.+.|.+|+||+++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4789999999999999999999999999999863
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0066 Score=58.18 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+|++|||+|.-||.||.+|++.|.+|+++|+....+.
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG 51 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG 51 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence 458999999999999999999999999999998854433
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.009 Score=59.23 Aligned_cols=98 Identities=31% Similarity=0.425 Sum_probs=25.6
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc---------ccH-------------------
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS---------FDD------------------- 284 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~---------~~~------------------- 284 (436)
|+|||||+.|+-.|..+++.| .+|.|+++...+.. +..
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 899999999999999999877 89999998643310 000
Q ss_pred -----------------------HHHHHHHHHHHhcCCEEEecc-eEEEeC-----CeEEEcC---CcEEecceEEEecC
Q 013810 285 -----------------------RLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLILND---GTEVPYGLLVWSTG 332 (436)
Q Consensus 285 -----------------------~~~~~~~~~l~~~gV~i~~~~-v~~i~~-----~~v~~~~---g~~i~~D~vi~a~G 332 (436)
.+...+.+.+++.||+++.++ +.++.. .+|++.+ ..++.++.+|-|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001123344556678888774 555532 2355543 35799999999999
Q ss_pred CCCchhcccCCCCC
Q 013810 333 VGPSTLVKSLDLPK 346 (436)
Q Consensus 333 ~~p~~~~~~~~l~~ 346 (436)
.- .+....|++.
T Consensus 148 ~g--~l~~~aG~~~ 159 (428)
T PF12831_consen 148 DG--DLAALAGAPY 159 (428)
T ss_dssp --------------
T ss_pred cc--cccccccccc
Confidence 42 3444444443
|
|
| >COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.007 Score=55.66 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...|-|||||.||-.||++++++|..|.|+|-.+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 3569999999999999999999999999999654
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.013 Score=49.27 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|..-|..|.+.|++|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4588999999999999999999999999999754
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0075 Score=55.13 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~ 97 (436)
..+|+||||||..|++.|++|.- .+.+|.|+|++..+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 46999999999999999999854 58999999998764
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.01 Score=50.01 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|+|||||..|.++|..|++.|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999874
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.15 Score=44.71 Aligned_cols=91 Identities=20% Similarity=0.327 Sum_probs=53.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------cc-----c---------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------SF-----D--------------- 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~--------~~-----~--------------- 283 (436)
.|+|||+|++|+-+|..|++.+ .+|.+++++.... .| .
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 7999999999999999999876 9999999852110 01 0
Q ss_pred -----------HHHHHHHHHHHHhcCCEEEecc-eEEE--eC-Ce---EEEc-----------CCcEEecceEEEecCCC
Q 013810 284 -----------DRLRHYATTQLSKSGVRLVRGI-VKDV--DS-QK---LILN-----------DGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~i~~~~-v~~i--~~-~~---v~~~-----------~g~~i~~D~vi~a~G~~ 334 (436)
.++...+....-+.|++++... +.++ .+ ++ |.++ |--.+++..||-|||..
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 1111222223334788888774 5554 22 22 3332 22378999999999998
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 76
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.075 Score=48.21 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=27.9
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.++|+|+|||.+|+-.|.+|++.. ...+....||+++..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~--------sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHP--------SFKKGELDITIFESK 48 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCC--------ccCCCceeEEEEeec
Confidence 369999999999999999998743 112233566666654
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.18 Score=48.67 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=26.7
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++|+.+||+++...+.. ..-+..|+.+|..+|+.|...
T Consensus 264 ~~vvlVGDAAg~i~P~t----G~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 264 DNAFLIGEAAGFISPSS----LEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCEEEEEcccCccCCcc----CccHHHHHHhHHHHHHHHHhc
Confidence 56899999998654311 234567888888888888644
|
|
| >KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0042 Score=60.74 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=34.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
....||+|||||..|-.||+..+-+|+++.|+|+++.-
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEeccccc
Confidence 34589999999999999999999999999999988653
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.11 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
+|+|||||+.|+-+|..|++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G 23 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG 23 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC
Confidence 6999999999999999998744
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~ 253 (436)
.+|+|||+|..|+-+|..|++.|
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G 66 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDG 66 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcC
Confidence 47999999999999999998744
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.025 Score=55.81 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=28.4
Q ss_pred cCCEEEecceEEEe--C----CeEEEcCCcEEecceEEEecCC
Q 013810 297 SGVRLVRGIVKDVD--S----QKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 297 ~gV~i~~~~v~~i~--~----~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.++.++.+.|.++. + .+|++.+|.++.|+.||+++|.
T Consensus 114 ~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 114 PNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 37777777655442 1 4688899999999999999995
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.013 Score=58.67 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+|+|||.|++|+++|..|.+.|++|+++|+++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5999999999999999999999999999987654
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.013 Score=50.69 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998765
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.021 Score=50.25 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||-.|...|..|.+.|.+|+||+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3579999999999999999999999999999875
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.015 Score=52.05 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|||+|..|.+.|..|.+.|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999998743
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.051 Score=54.82 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSP 93 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~ 93 (436)
..-+|||||||-+|.++|.+|++.|.+ .++.|+
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~ 71 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLER 71 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEee
Confidence 346899999999999999999999998 444444
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=49.66 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred cEEEECCChHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDF 252 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~ 252 (436)
+|+|||+|++|+.+|..|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 799999999999999999864
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.053 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.9
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
.|+|||||..|+|.|.+.++.|
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred cEEEECCCccchHHHHHHHhcC
Confidence 7999999999999999999887
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.059 Score=44.86 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=50.5
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~ 311 (436)
|+|+|+|.+|.-+|..|++.+ .+|+++.|.. ..+.+++.|+.+.... -..+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r~~------------~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSRSP------------RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEESHH------------HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEccc------------cHHhhhheeEEEEecccceeccc
Confidence 689999999999999998755 8999998841 1223677888887664 111111
Q ss_pred CeEEEcCC--cEEecceEEEecCCCCc
Q 013810 312 QKLILNDG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 312 ~~v~~~~g--~~i~~D~vi~a~G~~p~ 336 (436)
.....+. ..-++|.||+|+-....
T Consensus 55 -~~~~~~~~~~~~~~D~viv~vKa~~~ 80 (151)
T PF02558_consen 55 -PIVISAPSADAGPYDLVIVAVKAYQL 80 (151)
T ss_dssp -EEEESSHGHHHSTESEEEE-SSGGGH
T ss_pred -ccccCcchhccCCCcEEEEEecccch
Confidence 1112221 34568999999865544
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.074 Score=53.18 Aligned_cols=76 Identities=29% Similarity=0.349 Sum_probs=53.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++++|+|+|.+|..+|..|++.| .+|+++++... +.+ +...+.+.+.|++++.+....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~~-----~~~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKEE-----DQL-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCch-----HHH-HHHHHHHHhcCCEEEeCCcch--
Confidence 58999999999999999999876 99999987531 122 222344666788877654321
Q ss_pred CCeEEEcCCcEEecceEEEecCCCCc
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
...-.+|+||.++|..++
T Consensus 64 --------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 --------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred --------hHhhcCCEEEECCCCCCC
Confidence 011247999999998776
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.035 Score=48.91 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=48.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++|+|||||.+|..-+..|.+.+ .+|+++.+. +.+++. +..+..+|+++.+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~--- 63 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD--- 63 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC---
Confidence 58999999999999999998766 899999753 123332 2333345665544211
Q ss_pred CCeEEEcCCcEEecceEEEecCCC-Cc
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVG-PS 336 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (436)
.+.--.+|+||.|||.. .|
T Consensus 64 -------~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 64 -------ADILEGAFLVIAATDDEELN 83 (205)
T ss_pred -------HHHhCCcEEEEECCCCHHHH
Confidence 01112489999999986 45
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.023 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.8
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999754
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.068 Score=49.72 Aligned_cols=99 Identities=18% Similarity=0.248 Sum_probs=67.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHH--HhhhcCCCCccEEE---EEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEec
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDV--RQRYSHVKDYIHVT---LIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~--~~~~~~~~~~~~V~---lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~ 304 (436)
-.|+|||||+.|...|.+.++.|-+.- .+++.. +|. =++. -......++.+...+++..++..|.+...
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGG-----QvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGG-----QVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCC-----eeccccchhheeccccccchHHHHHHHHHHhhcCchhhhh
Confidence 479999999999999999888663211 122221 111 0111 01122356888999999999999998765
Q ss_pred -ceEEEeC-------CeEEEcCCcEEecceEEEecCCC
Q 013810 305 -IVKDVDS-------QKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 305 -~v~~i~~-------~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
+.+.+++ ..|++++|-.+.+..+|+++|.+
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 2333332 25888999999999999999975
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.074 Score=56.83 Aligned_cols=34 Identities=32% Similarity=0.501 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|+.|+-+|..|++.+ ++.+|+|+++.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecCC
Confidence 7999999999999999998752 237888888753
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.026 Score=56.47 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||+|.+|+++|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34789999999999999999999999999999874
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.04 Score=38.99 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=25.7
Q ss_pred EECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 013810 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (436)
Q Consensus 235 ViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 278 (436)
|||+|.+|+-+|..|++.+ .+|+++++.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCcc
Confidence 7999999999999999765 89999999653
|
... |
| >KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.035 Score=52.81 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCcEEEECCchHHHHHHHhccc----CCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~ 94 (436)
.++|||||||||+|++.|..|.. +..+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 36899999999999999999875 35679999866
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.12 Score=49.44 Aligned_cols=50 Identities=8% Similarity=0.074 Sum_probs=31.0
Q ss_pred CCcEEEEe-EeEeEeCCCCE-EEEE--EecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 131 PGSYFFLS-HCAGIDTDNHV-VHCE--TVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 131 ~~~~~~~~-~v~~id~~~~~-v~~~--~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+..+.. +|..+...... +.+. ....++ .+++.+|.||+|||-+...|.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~------~~t~~~D~vIlATGY~~~~P~ 344 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGE------LETVETDAVILATGYRRAVPS 344 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCC------ceEEEeeEEEEecccccCCch
Confidence 34444443 77888766533 4433 222332 237889999999999866663
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.057 Score=47.46 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=45.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
++|+|||||.+|...+..|.+.+ .+|+++.+. +.+++. +......+.+....
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~~-----~~~~l~----~l~~~~~i~~~~~~----- 62 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISPE-----LTENLV----KLVEEGKIRWKQKE----- 62 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcCC-----CCHHHH----HHHhCCCEEEEecC-----
Confidence 58999999999999999998765 899999752 223332 23333334442211
Q ss_pred CCeEEEcCCcEEecceEEEecCCCC
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+....--.+|+||.||+...
T Consensus 63 -----~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 63 -----FEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred -----CChhhcCCceEEEEcCCCHH
Confidence 11111235899999998755
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.3 Score=45.52 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe----C---CeEEEcCCcEEecceEEEecCCCCchhcc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD----S---QKLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~----~---~~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (436)
+.++..+++.|+.++.++ ++.++ + ..|.+++|....++.+|+++|..-+.++.
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcC
Confidence 445556778899999884 55443 2 35778899999999999999988776554
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=48.71 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=25.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 275 (436)
+|+|||||..|+-.|..|.+.| .+|.+++.
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~ 33 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLES 33 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEee
Confidence 7999999999999999999865 66666665
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.04 Score=46.91 Aligned_cols=34 Identities=26% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|+|+|.+|..||..|...|++|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3789999999999999999999999999999763
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.34 Score=49.25 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEE--cCC--cEEecceEEEecC-CCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~--~~g--~~i~~D~vi~a~G-~~p~ 336 (436)
+.+.+.+.+++.||+++.++ ++++.. + +|.+ .++ .++.+|.||+|+| +..|
T Consensus 192 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 192 LVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 34455556667788888874 666642 2 2333 333 3588999999998 6655
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.046 Score=56.71 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 356 ~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.+++ |++||+||+|||+... ...++..+..+|++++.++..+.
T Consensus 389 ~~~~-T~v~glyA~Ge~~~~~-------~~~l~~~s~~~g~~ag~~~~~~~ 431 (608)
T PRK06854 389 YNRM-TTVEGLFAAGDVVGGS-------PHKFSSGSFAEGRIAAKAAVRYI 431 (608)
T ss_pred cccc-cCCCCEEEeeecCCCC-------cchhHHHHHHHHHHHHHHHHHHH
Confidence 8899 8999999999997521 14577788889999998887543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.034 Score=44.92 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++++||.| .|.+.|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998765
|
|
| >KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.057 Score=54.56 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~~ 97 (436)
..+|.+|||||.||+..|..|.+ ...+|.|+|+....
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 46999999999999999999998 56899999998765
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.053 Score=44.31 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~ 94 (436)
.++++|||+|-+|-+++.+|...|.+ |+|+.|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47999999999999999999999987 9999886
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.045 Score=53.41 Aligned_cols=42 Identities=21% Similarity=0.098 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 355 d~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+++|++...||+|++|.+++. .--..|..+|..|+.|+....
T Consensus 322 ~~~l~~k~~~~l~~AGqi~g~----------~Gy~ea~a~G~~Ag~n~~~~~ 363 (436)
T PRK05335 322 DPTLQLKKRPNLFFAGQITGV----------EGYVESAASGLLAGINAARLA 363 (436)
T ss_pred chhccccCCCCEEeeeeecCc----------hHHHHHHHHHHHHHHHHHHHh
Confidence 345775578999999999985 234489999999999997654
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.056 Score=55.53 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
.+||||||||.|||+||+.+++. |.+|+||||.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 47999999999999999999976 789999998864
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.055 Score=50.44 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|.|||+|.-|...|..++..|++|+++|+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999998754
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.11 Score=46.14 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~ 308 (436)
++++|+|||||.+|..=+..|.+.+ .+|+++.+ ++...+.+......|+++....
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap---------~i~~el~~l~~~~~i~~~~r~~-- 78 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSK---------KFSKEFLDLKKYGNLKLIKGNY-- 78 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcC---------CCCHHHHHHHhCCCEEEEeCCC--
Q ss_pred EeCCeEEEcCCcEEecceEEEecC
Q 013810 309 VDSQKLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 309 i~~~~v~~~~g~~i~~D~vi~a~G 332 (436)
..+..-.+++||.||+
T Consensus 79 --------~~~dl~g~~LViaATd 94 (223)
T PRK05562 79 --------DKEFIKDKHLIVIATD 94 (223)
T ss_pred --------ChHHhCCCcEEEECCC
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.049 Score=52.63 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=39.9
Q ss_pred cEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 351 RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 351 ~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+.+|+.+. |+.+++|++||+++. ...+..|...|..+|+.|+..
T Consensus 438 ri~~d~~~~-t~i~gLy~aGdGAG~---------argI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 438 RIKVDEDLS-TSIKGLYPAGDGAGL---------ARGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred eEeecccce-eeecceEEccccccc---------cchhHHHhhhhHHHHHHHHHH
Confidence 478888866 999999999999997 788999999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 436 | ||||
| 4g6g_A | 502 | Crystal Structure Of Ndh With Trt Length = 502 | 2e-44 | ||
| 4g9k_A | 471 | Structure Of The Ndi1 Protein From Saccharomyces Ce | 6e-44 | ||
| 3hyv_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 3e-08 | ||
| 3hyw_A | 430 | 3-D X-Ray Structure Of The Sulfide:quinone Oxidored | 3e-08 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 6e-07 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 9e-06 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 1e-05 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 1e-05 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 1e-05 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 1e-04 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-04 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 1e-04 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 1e-04 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 1e-04 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 3e-04 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 5e-04 |
| >pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt Length = 502 | Back alignment and structure |
|
| >pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces Cerevisiae Length = 471 | Back alignment and structure |
|
| >pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase From The Hyperthermophilic Bacterium Aquifex Aeolicus Length = 430 | Back alignment and structure |
|
| >pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase Of The Hyperthermophilic Bacterium Aquifex Aeolicus In Complex With Decylubiquinone Length = 430 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 436 | |||
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 1e-46 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 7e-37 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 2e-36 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 5e-31 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 1e-29 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 3e-29 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 4e-29 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-26 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 4e-26 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 5e-26 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 8e-26 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 8e-25 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 1e-24 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 4e-19 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 3e-17 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 1e-15 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 2e-15 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 3e-15 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 4e-15 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 1e-14 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 1e-13 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 1e-13 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 3e-13 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 3e-13 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 6e-13 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 9e-13 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 1e-12 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 6e-12 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 1e-11 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 1e-11 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 2e-11 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 6e-11 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 2e-10 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 3e-10 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 4e-10 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 5e-10 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 5e-10 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 7e-10 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 9e-10 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-04 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 1e-08 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 4e-05 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 6e-05 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 2e-04 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 2e-04 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 6e-04 |
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-46
Identities = 61/339 (17%), Positives = 121/339 (35%), Gaps = 27/339 (7%)
Query: 63 PRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAE 118
+V+VLG + L + + + DV ++ F P L +G + +
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKA-DVKVINKSRFSYFRPALPHVAIGVRDVDELKV 60
Query: 119 PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178
++ P E G F ID + +V+ + YD +++ +
Sbjct: 61 DLSEALP----EKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAE-------EEYDYVIVGI 109
Query: 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEEEKSRLLHCV 234
GA +T + G + + E A ++R KL N+ + P +
Sbjct: 110 GAHLATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPEN 169
Query: 235 VVGGGP-TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V E+S ++ ++ + D +HVT+ E LS R +
Sbjct: 170 FVPNADSACEGPVFEMS-LMLHGYFKKK-GMLDKVHVTVFSPGEYLSDLSPNSRKAVASI 227
Query: 294 LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVK-SLDLPKSPGGR 351
++ G++LV +K++ +++ G +P + + + +K S GG
Sbjct: 228 YNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGF 287
Query: 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
I D + +V+AVGD + + K A+
Sbjct: 288 IPTDLNMVSIKYDNVYAVGDANSM--TVPKLGYLAVMTG 324
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 7e-37
Identities = 53/356 (14%), Positives = 105/356 (29%), Gaps = 47/356 (13%)
Query: 60 NEKPRVVVLGSGWAGC----RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS 115
VV+LG+G G + + + + +V +S ++ F P VG E
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGH-EVTLISANDYFQFVPSNPWVGVGWKERDD 60
Query: 116 VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175
+A PI + R+ G +F ID + + + YD L+
Sbjct: 61 IAFPIRHY---VERK-GIHFIAQSAEQIDAEAQNITLADGN-----------TVHYDYLM 105
Query: 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235
IA G + + + G + ++ + R + +
Sbjct: 106 IATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAE---------YQALLREPGPIVIG 156
Query: 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR----LRHYAT 291
G + + E + I+ ++ T I + + + + T
Sbjct: 157 AMAGASCFGPAYEYA-MIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILT 215
Query: 292 TQLSKSGVRLVRG-IVKDVDSQKLILNDGT---------EVPYGLLVWSTGVGPSTLVKS 341
L + G+ V V+ K+ + +P + V
Sbjct: 216 KGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG 275
Query: 342 LDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGK---TVLPALAQVSYEQ 394
++ +PGG + +DE R ++FA G T P +
Sbjct: 276 VEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESM 331
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-31
Identities = 45/251 (17%), Positives = 98/251 (39%), Gaps = 44/251 (17%)
Query: 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHH 202
I+ + V +V + +T E +F+ SYDKL+++ GA A++ G + LR +
Sbjct: 84 INDERQTV---SVLN-RKTNE--QFEESYDKLILSPGASANSLGFES--DITFTLRNLED 135
Query: 203 AQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRY 261
I + + + + +VVG G +E + + R
Sbjct: 136 TDAIDQFI-------------KANQVD--KVLVVGAGYVSLE----VLENLYERG----- 171
Query: 262 SHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILNDG 319
+H TLI +++I D + +L K + + ++ ++ G
Sbjct: 172 ------LHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNEITFKSG 225
Query: 320 TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLE 377
Y +++ G P++ ++S ++ G I +++ +V +++A+GD + +
Sbjct: 226 KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFET-NVPNIYAIGDIATSHYR 284
Query: 378 STGKTVLPALA 388
LA
Sbjct: 285 HVDLPASVPLA 295
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 64/260 (24%), Positives = 106/260 (40%), Gaps = 51/260 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID H V + + LRT E + + YDKLV+ALG++A+ + G+ T + +
Sbjct: 91 AIDRAAHTV---EIEN-LRTGE--RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNL 144
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260
A+ ++ + + V+VGGG G+E + L+D
Sbjct: 145 DEAEFVQHAI-------------SAGEVS--KAVIVGGGFIGLEMAVSLAD--------- 180
Query: 261 YSHVKDYIHVTLIE-ANEILSSFDDR-LRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
I T++E A++I+ F + L L K+ V + V + +
Sbjct: 181 ----MWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVA 236
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
++ D + L++ + GV P+T L + L P G I +D +R S D+FA GDC
Sbjct: 237 RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRT-SDPDIFAGGDC 295
Query: 373 SGYLES----TGKTVLPALA 388
TGK L
Sbjct: 296 V---TIPNLVTGKPGFFPLG 312
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 50/260 (19%), Positives = 100/260 (38%), Gaps = 54/260 (20%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT+ +V +T + F+ SYD+L+IA G G + L+ +
Sbjct: 118 KVDTEKKIV---YAEH-TKTKD--VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTI 171
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A+ I + L E K ++GGG G+E +++ F+
Sbjct: 172 PDAERILKTL-------------ETNKVE--DVTIIGGGAIGLE----MAETFVELG--- 209
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQK 313
V +IE + I + +D + Y + K + + V+ + + +
Sbjct: 210 --------KKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGN-ERVE 260
Query: 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+ D L++ S GV P+T ++ ++ + G I ++ +++ +VQDV+A GDC
Sbjct: 261 AVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQT-NVQDVYAAGDC 319
Query: 373 SGYLES----TGKTVLPALA 388
+ +
Sbjct: 320 A---THYHVIKEIHDHIPIG 336
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 50/258 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK--ENATFLRE 199
I+ + + T+ + + T E + +YD L+++ GA+ I G++ + LR
Sbjct: 118 KINKEEKTI---TIKN-VTTNE--TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRN 171
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVR 258
V I+ + +E+K R H V+GGG GVE + + R
Sbjct: 172 VPDTDRIKAYI-------------DEKKPR--HATVIGGGFIGVE----MVENLRERG-- 210
Query: 259 QRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
I VTL+E AN+++ D + Y + V L V + ++
Sbjct: 211 ---------IEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA 259
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+ L G+ + +L+ + GV P + L K L G I ++E + S ++A+GD
Sbjct: 260 VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQT-SDPHIYAIGD 318
Query: 372 C-SGYLESTGKTVLPALA 388
T + LA
Sbjct: 319 AIEVKDFVTETETMIPLA 336
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 60/276 (21%), Positives = 99/276 (35%), Gaps = 66/276 (23%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
ID +V TV L +++ SYD L+++ GA I GV LR +
Sbjct: 83 AIDRAAKLV---TVRR-LLDGS--EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNI 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
I + + + H VVGGG G+ E+ +
Sbjct: 137 PDMDRILQTI-------------QMNNVE--HATVVGGGFIGL----EMMESLHHLG--- 174
Query: 260 RYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ- 312
I TL+E A+++++ D + +A + GV L + + V +
Sbjct: 175 --------IKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226
Query: 313 ------------------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIG 353
L L++G + LL+ + GV P T L + L G I
Sbjct: 227 ASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIK 286
Query: 354 IDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALA 388
++ ++ S ++AVGD TG+ L LA
Sbjct: 287 VNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLA 321
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 64/259 (24%), Positives = 100/259 (38%), Gaps = 52/259 (20%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
I H V TV D L + E + +YDKL+I+ GA I G +N +R
Sbjct: 81 AIQPKEHQV---TVKD-LVSGE--ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGR 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A ++++K + + + VV+G G G+E ++ F
Sbjct: 135 QWAIKLKQKT-------------VDPEVN--NVVVIGSGYIGIE----AAEAFAKAG--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
VT+I+ + L D T ++ + + + V D
Sbjct: 173 --------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGD-GRV 223
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
+ ++ D L+V + GV P+T +K L+L P G I DE++R S DVFAVG
Sbjct: 224 QKVVTDKNAYDADLVVVAVGVRPNTAWLKGTLEL--HPNGLIKTDEYMRT-SEPDVFAVG 280
Query: 371 DC-SGYLESTGKTVLPALA 388
D V ALA
Sbjct: 281 DATLIKYNPADTEVNIALA 299
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 60/261 (22%), Positives = 100/261 (38%), Gaps = 60/261 (22%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+DT V + +D LV A GA I GV +
Sbjct: 84 EVDTGYVRV---RENGG-------EKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLP 133
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A IR + EK ++ + V++GGG G+E +++ F +
Sbjct: 134 PDALAIREYM---------------EKYKVENVVIIGGGYIGIE----MAEAFAAQG--- 171
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+VT+I +L SFD + +L K V L I + +
Sbjct: 172 --------KNVTMIVRGERVLRRSFDKEVTDILEEKLKK-HVNLRLQEITMKIEGE-ERV 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+ ++ D E L++ +TG+ P+ L K L + G I +E ++ SV++V+A GD
Sbjct: 222 EKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQT-SVENVYAAGD 280
Query: 372 CSGYLES----TGKTVLPALA 388
+ E+ TG+ V LA
Sbjct: 281 VA---ETRHVITGRRVWVPLA 298
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 8e-26
Identities = 52/258 (20%), Positives = 94/258 (36%), Gaps = 51/258 (19%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D + + V D L T E + +YDKL++ G++ + I G+ +
Sbjct: 83 NVDPETKTI---KVKD-LITNE--EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNY 136
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
+ A+++ + K++ ++G G G E L++ + ++
Sbjct: 137 NDAKKLFEEA---------------PKAK--TITIIGSGYIGAE----LAEAYSNQN--- 172
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+V LI+ +L FD GV L V + D
Sbjct: 173 --------YNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEI 224
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
DG E+ + + G P+T L+K + G I DE++ S +D+FA GD
Sbjct: 225 ITKTLDGKEIKSDIAILCIGFRPNTELLKG-KVAMLDNGAIITDEYMHS-SNRDIFAAGD 282
Query: 372 C-SGYLESTGKTVLPALA 388
+ + T LA
Sbjct: 283 SAAVHYNPTNSNAYIPLA 300
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-25
Identities = 52/258 (20%), Positives = 89/258 (34%), Gaps = 54/258 (20%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREV 200
+D +N ++ ++ SYDKL++A GA + I G E + +
Sbjct: 83 AMDVENQLIAWTRKEEQ--------QWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFL 134
Query: 201 HHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD-FIMRDVRQ 259
A L E S+ V+G GP G+E D +
Sbjct: 135 SGALAAVPLL---------------ENSQ--TVAVIGAGPIGME----AIDFLVKMK--- 170
Query: 260 RYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
V + E +L FD + L K V V GI + +
Sbjct: 171 --------KTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANG 221
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
++ E+ +++ + P + + ++ I +D +L+ SV +VFA+GD
Sbjct: 222 IVLETSEQEISCDSGIFALNLHPQLAYLDK-KIQRNLDQTIAVDAYLQT-SVPNVFAIGD 279
Query: 372 C-SGYLESTGKTVLPALA 388
C S E +T L
Sbjct: 280 CISVMNEPVAETFYAPLV 297
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 56/269 (20%), Positives = 100/269 (37%), Gaps = 63/269 (23%)
Query: 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK---------- 191
ID D V + +YDKL+ A G++ I G +
Sbjct: 117 SIDYDAKTVTALV-DGK-------NHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEA 168
Query: 192 --ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
EN F++ ++ ++ KL E + + VVG G GVE L
Sbjct: 169 TLENLQFVKLYQNSADVIAKL-------------ENKDIK--RVAVVGAGYIGVE----L 209
Query: 250 SD-FIMRDVRQRYSHVKDYIHVTLIE-ANEILS-SFDDRLRHYATTQLSKSGVRL----- 301
++ F + V LI+ + L+ +D L + + G++L
Sbjct: 210 AEAFQRKG-----------KEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGET 258
Query: 302 VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRV 360
V+ + + + I+ D E +++ + G P+T L + G +++
Sbjct: 259 VKEVAGN-GKVEKIITDKNEYDVDMVILAVGFRPNTTLGNG-KIDLFRNGAFLVNKRQET 316
Query: 361 PSVQDVFAVGDC-SGYLESTGKTVLPALA 388
S+ V+A+GDC + Y +T T ALA
Sbjct: 317 -SIPGVYAIGDCATIYDNATRDTNYIALA 344
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 73/325 (22%), Positives = 124/325 (38%), Gaps = 71/325 (21%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
+ +VV++G+G G L K + Y+V + ++ P+L+ G +
Sbjct: 5 HHHGSKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIP----R 59
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ R+ G L+ A ID VV E ++ YD LV+
Sbjct: 60 NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK------------GEVPYDTLVL 107
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A GA A I G KE LR + A I+ + E S +++
Sbjct: 108 ATGARAREPQIKG-KEYLLTLRTIFDADRIKESI---------------ENSG--EAIII 149
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296
GGG G+E +G L++ V LI + D+ L + L +
Sbjct: 150 GGGFIGLELAGNLAEAGYH--------------VKLIHRGAMFLGLDEELSNMIKDMLEE 195
Query: 297 SGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG-- 349
+GV+ + ++ +L + + + + + G+ P+ DL + G
Sbjct: 196 TGVKFFLNSELLEANEEG-----VLTNSGFIEGKVKICAIGIVPNV-----DLARRSGIH 245
Query: 350 -GR-IGIDEWLRVPSVQDVFAVGDC 372
GR I ID+ R S +DV+A+GDC
Sbjct: 246 TGRGILIDDNFRT-SAKDVYAIGDC 269
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-17
Identities = 51/340 (15%), Positives = 114/340 (33%), Gaps = 71/340 (20%)
Query: 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVA 117
++ ++++LG+G AG K D+ ++ ++ + P L
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSI---- 61
Query: 118 EPIARIQPAISREPGSYFFLSHCA-GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176
+ I + + S A ID +N +V ++ KI Y+KL+I
Sbjct: 62 DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGE-----------KIKYEKLII 110
Query: 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV 236
A G+ A+ + + L A +I+ + + ++
Sbjct: 111 ASGSIANKIKVPH-ADEIFSLYSYDDALKIKDEC---------------KNKG--KAFII 152
Query: 237 GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL--RHYATTQL 294
GGG G+E + + D ++ + R QL
Sbjct: 153 GGGILGIELAQAIIDSGTP--------------ASIGI-------ILEYPLER-----QL 186
Query: 295 SKSGVRLVRGIVKD----VDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPG 349
+ G ++ + + + G + ++ + GV P+ +K ++
Sbjct: 187 DRDGGLFLKDKLDRLGIKIYTNSNFEEMGDLIRSSCVITAVGVKPNLDFIKDTEIA--SK 244
Query: 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 389
I +++ + S++D++A GD + + + A Q
Sbjct: 245 RGILVNDHMET-SIKDIYACGDVAEFYGKNPGLINIANKQ 283
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 56/247 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG-----VKENAT 195
+D +++V + +I+Y+K +IA G + VK T
Sbjct: 114 VQLDVRDNMVKLNDGS-----------QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTT 162
Query: 196 FLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255
R++ + + + E + ++GGG G E + L R
Sbjct: 163 LFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACALG----R 201
Query: 256 DVRQRYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKD 308
R V + + + L ++ ++ + GV++ V+ +
Sbjct: 202 KARAL------GTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVS 255
Query: 309 VDSQKLILNDGTEVPYGLLVWSTGVGPST-LVKS--LDLPKSPGGRIGIDEWLRVPSVQD 365
+ L DG +V +V + G+ P+ L K+ L++ GG ++ L+ + +
Sbjct: 256 SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGG-FRVNAELQ--ARSN 312
Query: 366 VFAVGDC 372
++ GD
Sbjct: 313 IWVAGDA 319
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 62/281 (22%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+S SY + G+ DNH V V + +
Sbjct: 95 IAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTV---LVRESADPNSAVLETLD 151
Query: 171 YDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +++A G+ GI G + E L + P
Sbjct: 152 TEYILLATGSWPQHLGIEG-DDLCITSNEA-------------FYLDEAPK--------- 188
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHY 289
+ VGGG +EF+G + + R V L + IL FD LR
Sbjct: 189 -RALCVGGGYISIEFAGIFNAYKARGG-----------QVDLAYRGDMILRGFDSELRKQ 236
Query: 290 ATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLD 343
T QL +G+ + + K+ D + + G E Y +++ + G P + ++L
Sbjct: 237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS--QTLQ 294
Query: 344 LPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
L K + G I +D + + +V +++A+GD + + T
Sbjct: 295 LEKAGVEVAKNGAIKVDAYSKT-NVDNIYAIGDVTDRVMLT 334
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 64/336 (19%), Positives = 119/336 (35%), Gaps = 82/336 (24%)
Query: 60 NEKPRVVVLGSGWAGCRLMKGI---DTSLYDVVCVSPRNHMVFT---------PLLASTC 107
+E+ +V++G+G AG L + D ++ + T P+L++
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRKLDGE-TPLL--------MITADDGRSYSKPMLSTGF 52
Query: 108 VGTLEFRSVAEPIARIQPAISREPGSYFFLSHC--AGIDTDNHVVHCETVTDELRTLEPW 165
+ A+ +A +P E + L+H GID + +
Sbjct: 53 SKNKD----ADGLAMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEE--------- 99
Query: 166 KFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNLMLSDVPGISE 224
+ Y LV+A GAE + G ++ + ++ R+
Sbjct: 100 ---VRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA-------------- 142
Query: 225 EEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSF 282
R +++G G G EF+ +LS + ++ E +
Sbjct: 143 -AGKR--RVLLLGAGLIGCEFANDLSSGGY--------------QLDVVAPCEQVMPGLL 185
Query: 283 DDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST 337
L GVR + + K + + L+DG +P L+V + G+ P T
Sbjct: 186 HPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245
Query: 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
L + L + G I +D LR S +++A+GDC
Sbjct: 246 ELAFAAGLAVNRG--IVVDRSLRT-SHANIYALGDC 278
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 60/285 (21%), Positives = 103/285 (36%), Gaps = 70/285 (24%)
Query: 120 IARIQPAISREPGSY-FFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKIS 170
IA A+ SY + G+D +VV V + K ++
Sbjct: 99 IAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVV---VVRETADPKSAVKERLQ 155
Query: 171 YDKLVIALGAEASTFGI----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226
D +++A G+ I H + N F L + P
Sbjct: 156 ADHILLATGSWPQMPAIPGIEHCISSNEAF------------------YLPEPPR----- 192
Query: 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDR 285
+ VGGG VEF+G + + + VTL N IL FD+
Sbjct: 193 -----RVLTVGGGFISVEFAGIFNAYKPPGGK-----------VTLCYRNNLILRGFDET 236
Query: 286 LRHYATTQLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLV 339
+R T QL+ +G+ ++ + + D K + G + +++ + G P T
Sbjct: 237 IREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT-- 294
Query: 340 KSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
L L +P G + +DE+ R +V +++A+GD + L T
Sbjct: 295 NDLQLGNVGVKLTPKGGVQVDEFSRT-NVPNIYAIGDITDRLMLT 338
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 49/241 (20%), Positives = 85/241 (35%), Gaps = 54/241 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D + + T +S D +VIA G+ A T + G + LR
Sbjct: 81 TALDVQTRTISLDDGT-----------TLSADAIVIATGSRARTMALPGSQLPGVVTLRT 129
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
Q +R +RL ++VGGG G E + R+
Sbjct: 130 YGDVQVLRDSW--------------TSATRL---LIVGGGLIGCEVATTA--------RK 164
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQ 312
+ VT++EA + L R+ + L++ GV++ V G + +
Sbjct: 165 L------GLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLE 218
Query: 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
+++ +DG + G P+ L + L G + +D + VFAVGD
Sbjct: 219 QVMASDGRSFVADSALICVGAEPADQLARQAGLACDRG--VIVDHCGAT-LAKGVFAVGD 275
Query: 372 C 372
Sbjct: 276 V 276
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VGGG GVEF+ VK TL+ + IL +FD LR
Sbjct: 195 VIVGGGYIGVEFANIFHGL----------GVK----TTLLHRGDLILRNFDYDLRQLLND 240
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK- 346
+ G+ ++ + + ++L +G + ++ +TG P+T L L +
Sbjct: 241 AMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNT--TGLGLERA 298
Query: 347 ----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G + +DE + +V ++AVGD +G+++ T
Sbjct: 299 GVKVNEFGAVVVDEKMTT-NVSHIWAVGDVTGHIQLT 334
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 50/237 (21%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
D H V + Y LV+A GA LR
Sbjct: 83 QSFDPQAHTVALSDGR-----------TLPYGTLVLATGAAPRALPTLQGATMPVHTLRT 131
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ A+ I+ L +SRL ++VGGG G+E + R
Sbjct: 132 LEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELAATA--------RT 166
Query: 260 RYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL 316
+HV+L+E ++S + L + + GV L V ++L
Sbjct: 167 A------GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLL 220
Query: 317 NDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+DGT + ++V GV + L ++ L G I +D + R + DV+A+GD
Sbjct: 221 DDGTRIAADMVVVGIGVLANDALARAAGLACDDG--IFVDAYGRT-TCPDVYALGDV 274
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 54/242 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
+D H V + I Y KL+ A G + G +R
Sbjct: 89 VSLDPAAHTVKLGDGS-----------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRT 137
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
A + +L + ++ + VV+GGG G+E + L +
Sbjct: 138 KEDADRLMAEL--------------DAGAK--NAVVIGGGYIGLEAAAVL--------TK 173
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
++VTL+EA + + L + + GV L + I D
Sbjct: 174 F------GVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKV 227
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
+ + DG+ +P +++ G+ P + S G + +DE+ R S+ DV+A+G
Sbjct: 228 TGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNG--VDVDEFCRT-SLTDVYAIG 284
Query: 371 DC 372
DC
Sbjct: 285 DC 286
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 55/242 (22%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLRE 199
ID + + + T I Y LV+A GA + + +LR
Sbjct: 80 VSIDREGRKLLLASGT-----------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRT 128
Query: 200 VHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259
+ ++ +R+++ +K + VV+G G G+EF+ R
Sbjct: 129 LDESEVLRQRM--------------PDKKHV---VVIGAGFIGLEFAATA--------RA 163
Query: 260 RYSHVKDYIHVTLIEANEIL--SSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDS- 311
+ + V ++E + + Y + S +G+R+ I + D
Sbjct: 164 K------GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDRV 217
Query: 312 QKLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370
++L+DG +P L+V GV P+ + + LP + G I +D+ L S + A+G
Sbjct: 218 TGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG--IIVDQQLLT-SDPHISAIG 274
Query: 371 DC 372
DC
Sbjct: 275 DC 276
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVG G GVE G ++ K L E + L SFD +
Sbjct: 171 AVVGAGYIGVELGGVINGL----------GAK----THLFEMFDAPLPSFDPMISETLVE 216
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
++ G +L +VK+ D + L DG L+W+ G P+ +++L
Sbjct: 217 VMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN--DNINLEA 274
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G I +D++ +++ ++AVGD +G +E T
Sbjct: 275 AGVKTNEKGYIVVDKYQNT-NIEGIYAVGDNTGAVELT 311
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 60/247 (24%)
Query: 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG----VKENATF 196
I+ D V + YD+LV+A G + N +
Sbjct: 84 TAINRDRQQVILSDGR-----------ALDYDRLVLATGGRPRPLPVASGAVGKANNFRY 132
Query: 197 LREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256
LR + A+ IRR+L +RL VV+GGG G+E + + I +
Sbjct: 133 LRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEVA---ATAIKAN 172
Query: 257 VRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQLSKSGVRL-----VRGIVKDV 309
+ HVTL++ +L + + ++GV + V G
Sbjct: 173 M-----------HVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMST 221
Query: 310 DSQK---LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQD 365
D QK ++ DGT +P L++ G+ P+ L + L G I I+E ++ S
Sbjct: 222 DQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNG--IVINEHMQT-SDPL 278
Query: 366 VFAVGDC 372
+ AVGDC
Sbjct: 279 IMAVGDC 285
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 29/158 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++ GGG VEF+ VK TLI EILS FD +R
Sbjct: 174 LIAGGGYIAVEFANIFHGL----------GVK----TTLIYRGKEILSRFDQDMRRGLHA 219
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLI-LNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346
+ + G+R++ + D D +++ E+ ++ + G P+T L L
Sbjct: 220 AMEEKGIRILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNT--NGLGLEA 277
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ G I +D + R S ++A+GD + ++ T
Sbjct: 278 AGVRTNELGAIIVDAFSRT-STPGIYALGDVTDRVQLT 314
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 29/158 (18%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
++G G G+E +G L F + VT++ + +L FD L
Sbjct: 170 AIIGAGYIGIELAGLLRSF----------GSE----VTVVALEDRLLFQFDPLLSATLAE 215
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPSTLVKSLDLPK 346
+ G+ + +D L+ DGT + + ++W+ G P+T + L L
Sbjct: 216 NMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT--RDLGLEA 273
Query: 347 -----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
G + D + +V V+A+GD +G + T
Sbjct: 274 AGIEVQSNGMVPTDAYQNT-NVPGVYALGDITGRDQLT 310
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 32/160 (20%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
VVVG G G+E +G + L+ +L FD+ +++ T
Sbjct: 189 VVVGAGYIGIELAGVFHGL----------GSE----THLVIRGETVLRKFDECIQNTITD 234
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKL--ILNDGTEV-PYGLLVWSTGVGPSTLVKSLDL 344
K G+ + + + K+V++ KL +ND + L+W+ G +
Sbjct: 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL---GMGS 291
Query: 345 PK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379
+ +I DE+ +V +++++GD G +E T
Sbjct: 292 ENVGIKLNSHDQIIADEYQNT-NVPNIYSLGDVVGKVELT 330
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 51/354 (14%), Positives = 94/354 (26%), Gaps = 68/354 (19%)
Query: 62 KPRVVVLGSGWAGC-------RLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV--GTLE 112
+VVV+G G G I +V + P L S V G +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSI-----EVTLIEPNTDYYTCYL--SNEVIGGDRK 54
Query: 113 FRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
S+ ++ G GID D +V + YD
Sbjct: 55 LESIKHGYDGLRA-----HGIQVVHDSATGIDPDKKLVKTAGGA-----------EFGYD 98
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHH------AQEIRRKLLLNLMLSDVPGISEEE 226
+ V+A G E I G E A + H +R++L +
Sbjct: 99 RCVVAPGIELIYDKIEGYSEEAAA-KLPHAWKAGEQTAILRKQL-----------EDMAD 146
Query: 227 KSRLLHCVVVGG---GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF 282
++ P E + +++ ++ + + S F
Sbjct: 147 GGTVVIAPPAAPFRCPPGPYERASQVAYYLKA------HKPMSKVIILDSSQTFSKQSQF 200
Query: 283 DDRLRHYATTQLSKSGVRLV---RGIVKDVDSQKLIL--NDGTEVPYGLLVWSTGVGPST 337
+ + V VD ++++ G E ++
Sbjct: 201 SKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIPPQRAGK 260
Query: 338 LVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQV 390
+ + L G +D + + +GD S K+ A +Q
Sbjct: 261 IAQIAGLTN-DAGWCPVDIKTFESSIHKGIHVIGDASIAN-PMPKSGYSANSQG 312
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 29/173 (16%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
+VG G VE + + + N IL FD+ + +
Sbjct: 180 GIVGSGYIAVELINVIKRL----------GID----SYIFARGNRILRKFDESVINVLEN 225
Query: 293 QLSKSGVRL-----VRGIVKDVDSQKLI-LNDGTEV-PYGLLVWSTGVGPSTLVKSLDLP 345
+ K+ + + V I K D I L+DG + +++ G P T ++L L
Sbjct: 226 DMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT--ENLKLE 283
Query: 346 ----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
++ I +DE R SV +++AVGDC +S L L + E+
Sbjct: 284 KLNVETNNNYIVVDENQRT-SVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEER 335
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 21/176 (11%), Positives = 56/176 (31%), Gaps = 40/176 (22%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
+P + E L C +++ ++ +
Sbjct: 121 SIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTL---HMTKLV----------- 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS-----QKLILNDG 319
++ +I N + L +LS + ++ ++ + +K+ + G
Sbjct: 167 YNWSTDLVIATN------GNELSQTIMDELSNKNIPVITESIRTLQGEGGYLKKVEFHSG 220
Query: 320 TEVPY-GLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+ G + T P+ ++ L G ID++ R S ++++ G+ +
Sbjct: 221 LRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRT-SEKNIYLAGETTT 275
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 37/164 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE-ANEILSSFDDRLRHYATT 292
V+VG G VE +G LS K +L+ +++L SFD + T
Sbjct: 191 VIVGAGYIAVEMAGILSAL----------GSK----TSLMIRHDKVLRSFDSMISTNCTE 236
Query: 293 QLSKSGVRLVRG-----IVKDVDSQKLILNDGTE---------VPYGLLVWSTGVGPSTL 338
+L +GV +++ + K + ++ + L+W+ G P+T
Sbjct: 237 ELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT- 295
Query: 339 VKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377
K L L K G I +DE+ +V+ ++AVGD G
Sbjct: 296 -KDLSLNKLGIQTDDKGHIIVDEFQNT-NVKGIYAVGDVCGKAL 337
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 47/276 (17%), Positives = 88/276 (31%), Gaps = 71/276 (25%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I ++ D+H + + + E I+
Sbjct: 100 VQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERT--------ITA 151
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
VIA+G I G E ++ L PG
Sbjct: 152 QTFVIAVGGRPRYPDIPGAVEYGITSDDL-------------FSLDREPG---------- 188
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG G G+E +G L + T++ + +L FD ++
Sbjct: 189 KTLVVGAGYIGLECAGFLKGL----------GYE----PTVMVRSIVLRGFDQQMAELVA 234
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLI------LNDGTEVPYGLLVWSTGVGPSTLVK 340
+ + G+ +R + K D + L+ + +E Y ++W+ G
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLV--D 292
Query: 341 SLDLP----KSPGGRIGIDEWLRVPSVQDVFAVGDC 372
L+LP +I +D +V +++AVGD
Sbjct: 293 DLNLPNAGVTVQKDKIPVDSQEAT-NVANIYAVGDI 327
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 45/279 (16%), Positives = 85/279 (30%), Gaps = 73/279 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+Q + + + D H V +S
Sbjct: 96 AEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTV-------RGVDKGGKATLLSA 148
Query: 172 DKLVIALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRL 230
+ +VIA G + G E ++ L + PG
Sbjct: 149 EHIVIATGGRPRYPTQVKGALEYGITSDDI-------------FWLKESPG--------- 186
Query: 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290
+VVG +E +G L+ + T++ + L FD ++
Sbjct: 187 -KTLVVGASYVALECAGFLTGI----------GLD----TTVMMRSIPLRGFDQQMSSLV 231
Query: 291 TTQLSKSGVRLVRG-----IVKDVDSQ-KLILNDGT-----EVPYGLLVWSTGVGPSTLV 339
T + G + ++G I K +Q ++ D + ++W+ G P T
Sbjct: 232 TEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET-- 289
Query: 340 KSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDC 372
++L+L K +I +D SV ++A+GD
Sbjct: 290 RTLNLEKAGISTNPKNQKIIVDAQEAT-SVPHIYAIGDV 327
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 78/284 (27%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
+ +Q I Y + H V ++ I+
Sbjct: 198 VEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEV-------QITDKNQKVSTITG 250
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
+K+++A G I G E ++ L PG
Sbjct: 251 NKIILATGERPKYPEIPGAVEYGITSDDL-------------FSLPYFPG---------- 287
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+V+G +E +G L+ VT++ + +L FD ++
Sbjct: 288 KTLVIGASYVALECAGFLASL----------GGD----VTVMVRSILLRGFDQQMAEKVG 333
Query: 292 TQLSKSGVRLVRG-------------IVKDVDSQKLI---LNDGT--EVPYGLLVWSTGV 333
+ GV+ + + L+ DG E + ++++ G
Sbjct: 334 DYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGR 393
Query: 334 GPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDC 372
P + GR+ + + +V +V+A+GD
Sbjct: 394 EPQL--SKVLCETVGVKLDKNGRVVCTDDEQT-TVSNVYAIGDI 434
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 60/221 (27%)
Query: 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN---LMLSDVPGISEE 225
+ +D+ ++A GA + I G+KE + L +P
Sbjct: 137 VMFDRCLVATGASPAVPPIPGLKE---------------SPYWTSTEALASDTIPE---- 177
Query: 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH--VKDYIHVTLIEANEILSSFD 283
RL V+G +E + Q ++ K VT++ N + D
Sbjct: 178 ---RL---AVIGSSVVALELA------------QAFARLGSK----VTVLARNTLFFRED 215
Query: 284 DRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL 338
+ T G+ + + L G LLV +TG P+T
Sbjct: 216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHGELRADKLLV-ATGRTPNT- 273
Query: 339 VKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+SL L + G I ID+ +R S +++A GDC+
Sbjct: 274 -RSLALDAAGVTVNAQGAIVIDQGMRT-SNPNIYAAGDCTD 312
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 7e-10
Identities = 26/179 (14%), Positives = 52/179 (29%), Gaps = 40/179 (22%)
Query: 218 DVPGISEEEKSRLLHC-------------VVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
++ G+ E S + HC V+ P + + L D+
Sbjct: 116 EIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDW---------GET 166
Query: 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD-SQKLILNDGTEVP 323
L+ GVR+ ++++ ++L DG +
Sbjct: 167 -----TFFTN-------GIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIA 214
Query: 324 YGLLVWSTGVGPST-LVKSLDL---PKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES 378
L + + ++ L G I D + + + +FA GD + S
Sbjct: 215 LAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDVARPAGS 272
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 75/281 (26%)
Query: 120 IARIQPAISREPGSYFFLSHCAGID--------TDNHVVHCETVTDELRTLEPWKFKISY 171
I +Q I Y + H + + + S
Sbjct: 122 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKI-------YSA 174
Query: 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLL 231
++ +IA G GI G KE ++ L PG
Sbjct: 175 ERFLIATGERPRYLGIPGDKEYCISSDDL-------------FSLPYCPG---------- 211
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+VVG +E +G L+ + VT++ + +L FD + +
Sbjct: 212 KTLVVGASYVALECAGFLAGI----------GLD----VTVMVRSILLRGFDQDMANKIG 257
Query: 292 TQLSKSGVRLVRG-----IVKDVDSQKLIL---------NDGTEVPYGLLVWSTGVGPST 337
+ + G++ +R + + L + E Y ++ + G T
Sbjct: 258 EHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317
Query: 338 LVKSLDLPK------SPGGRIGIDEWLRVPSVQDVFAVGDC 372
+ + L G+I + + + +V ++A+GD
Sbjct: 318 --RKIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIYAIGDI 355
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 47/241 (19%), Positives = 78/241 (32%), Gaps = 60/241 (24%)
Query: 145 TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQ 204
DNH V + L++A+GA T + GV
Sbjct: 161 IDNHTV---EAAGK---------VFKAKNLILAVGAGPGTLDVPGVNAKGV-FDHATLV- 206
Query: 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264
L PG VVVGG T VE+ +
Sbjct: 207 ---------EELDYEPGS---------TVVVVGGSKTAVEYGCFFNAT----------GR 238
Query: 265 KDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLIL-- 316
+ ++ + D+ R Y ++ + G+ + V I +D + + +
Sbjct: 239 R----TVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVA 294
Query: 317 ---NDGTEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGD 371
N + + G P + L K L L P G + ++E+L+ SV +V+AVGD
Sbjct: 295 MTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQT-SVPNVYAVGD 353
Query: 372 C 372
Sbjct: 354 L 354
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 7e-09
Identities = 67/429 (15%), Positives = 127/429 (29%), Gaps = 109/429 (25%)
Query: 77 LMKGIDTSL-YDVVCVSP----RNHMVFTPLLASTCVGTLEFRS---------VAEPIAR 122
+ K I + D + +S +F LL+ +F + PI
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 123 --IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVT-----DELRT----LEPWKFKISY 171
QP++ ++ + DN V V+ +LR L P K +
Sbjct: 101 EQRQPSMMTR----MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 172 D-----KLVIALGAEASTFGIHGVKENATF---LREVHHAQEIRRKLLLNLMLSDVPGIS 223
K +AL ++ + + F L+ + + + L L D S
Sbjct: 157 GVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 224 EEEKSRLLHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN----EI 278
+ S + + EL + K Y + L+ N +
Sbjct: 216 RSDHSSNI--------KLRIHSIQAELRRLLKS---------KPYENCLLVLLNVQNAKA 258
Query: 279 LSSFDDRLRHYATT---QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335
++F+ + TT Q++ + + D + LL+ P
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYLDCRP 315
Query: 336 STLVKSLDLPK-----SPG--GRIG---------IDEWLRVPSVQDVFAVGDCSGYLEST 379
DLP+ +P I D W V + + LE
Sbjct: 316 Q------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-- 367
Query: 380 GKTVLPALAQVSYEQLHLFQK----PSFLLARNWCW--------FFDVCSLTSILNRLQR 427
PA + +++L +F P+ LL+ W + S++ + +
Sbjct: 368 -----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--Q 420
Query: 428 GKENTFLVY 436
KE+T +
Sbjct: 421 PKESTISIP 429
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 2e-05
Identities = 44/290 (15%), Positives = 93/290 (32%), Gaps = 85/290 (29%)
Query: 74 GCR-LMKGIDTSLYDVVCVSPRNHMV-------FTP-----LLASTCVGTLEFRSVAEPI 120
C+ L+ + D + + H+ TP LL + + + +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YLDC-RPQDLPREV 322
Query: 121 ARIQP-AIS------RE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172
P +S R+ ++ H ++ D + L LEP +++ +D
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKH---VNCDKLT---TIIESSLNVLEPAEYRKMFD 376
Query: 173 KLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLL----LNLMLSDVPGISEE-EK 227
+L + F H I LL +++ SDV + + K
Sbjct: 377 RLSV-------------------FPPSAH----IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFD--DR 285
L+ E + + I +++ + + +H ++++ I +FD D
Sbjct: 414 YSLVEK-------QPKESTISIPS-IYLELKVKLENEYA-LHRSIVDHYNIPKTFDSDDL 464
Query: 286 L-------------RHYATTQLSKSGVRLVRGIVKDVD--SQKLILNDGT 320
+ H + + + L R + D QK+ +D T
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVFLDFRFLEQKIR-HDST 512
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 46/202 (22%)
Query: 249 LSDFIMRDVRQRYSHVKDYIHVTLI--EANEILSSFDDRLRHYAT-TQLSKSGVRLVRGI 305
F+ + + V+D L E + I+ S D L +V+
Sbjct: 26 EDAFV-DNFDCK--DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 306 VKDVDSQKLILNDGTEVPYGLLV--WST-GVGPSTLVKSLD------------LPKSPGG 350
V++V Y L+ T PS + + K
Sbjct: 83 VEEVLRIN----------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 351 RI----GIDEWL-RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405
R+ + + L + ++V G G +GKT + +SY+ F
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGV-LG----SGKTWVALDVCLSYKVQCKMDFKIF-- 185
Query: 406 ARNWCWFFDVCSLTSILNRLQR 427
W + S ++L LQ+
Sbjct: 186 ---WLNLKNCNSPETVLEMLQK 204
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 48/192 (25%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L +P H +VVG G TG EF ++ V VT++
Sbjct: 176 YDLDALPD----------HLIVVGSGVTGAEFVDAYTEL----------GVP----VTVV 211
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
+ +L D ++ GVRL + + + + DG V
Sbjct: 212 ASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHA 271
Query: 328 VWSTGVGPSTLVKSLDLPK-----SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKT 382
+ + G P+T L L + G + +D R ++A GDC+G
Sbjct: 272 LMTIGSVPNT--SGLGLERVGIQLGRGNYLTVDRVSRT-LATGIYAAGDCTG-------- 320
Query: 383 VLPALAQV-SYE 393
L LA V + +
Sbjct: 321 -LLPLASVAAMQ 331
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 34/168 (20%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L +VP +VVGGG G+E V ++
Sbjct: 161 LSFPEVPK----------RLIVVGGGVIGLELGVVWHRLGAE--------------VIVL 196
Query: 274 EA-NEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILNDGTEVPYGLL 327
E + IL + D + A K G+ + V +V + ++ L G + +
Sbjct: 197 EYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRV 256
Query: 328 VWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+ + G P T +++ L GRI +DE LR V ++A+GD
Sbjct: 257 LVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRT-RVPHIYAIGDV 303
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 20/158 (12%)
Query: 232 HCVVVGGGPTGVEFSGELSD-------------FIMRDVRQRYSHVKDYIHVTLIEANEI 278
++GGG +G + E+S F+ DV R + +
Sbjct: 165 RVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGRE 224
Query: 279 LSSFDDRLRHYATT----QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334
GV + DGTE + ++W TG
Sbjct: 225 PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFR 284
Query: 335 PSTL-VKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVG 370
P+ +K LDL +P G++ +D LR +V V+ +G
Sbjct: 285 PALSHLKGLDL-VTPQGQVEVDGSGLRALAVPSVWLLG 321
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 39/174 (22%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
++ ++P ++ G G G+EF L ++ V VT++
Sbjct: 165 ILSRELPK----------SIIIAGAGAIGMEFGYVLKNY----------GVD----VTIV 200
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRL-----VRGIVKDVDSQKLILN-DGTEVPYG- 325
E L + D + Q K GV + V I + + DG
Sbjct: 201 EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKA 260
Query: 326 --LLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+L + G P+ + + + IG+D+++R +V ++A+GD +G
Sbjct: 261 EKVLQ-AIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRT-NVGHIYAIGDVNG 312
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 46/178 (25%)
Query: 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI 273
L+D+P V G G G+E LS V V +
Sbjct: 168 FELNDLPK----------SVAVFGPGVIGLELGQALSRL----------GVI----VKVF 203
Query: 274 E-ANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYG------- 325
+ + + D+ ++ YA ++ + V ++ D EV Y
Sbjct: 204 GRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTIEKE----DAVEVIYFDKSGQKT 259
Query: 326 ------LLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374
+L +TG + +++ + DE SV +F GD +
Sbjct: 260 TESFQYVLA-ATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANN 316
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 40/155 (25%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE------ANEILSSFDDRLR 287
V +GGG +G + +S++ VK +VT+IE ++
Sbjct: 159 VTIGGGNSGAIAAISMSEY-----------VK---NVTIIEYMPKYMCENAYV---QEIK 201
Query: 288 H--------YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPY-GLLVWSTGVGPST- 337
T++ G ++ KD + + + G+ ++ G+ P T
Sbjct: 202 KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEE-----KLIETDGVFIY-VGLIPQTS 255
Query: 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372
+K + G I +D R SV V+A GD
Sbjct: 256 FLKDSGVKLDERGYIVVDSRQRT-SVPGVYAAGDV 289
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 436 | |||
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.98 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.96 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.93 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.89 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.88 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.71 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.63 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.6 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.59 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.31 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.19 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.17 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.12 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.05 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.01 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.96 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.96 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.91 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.9 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.88 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.87 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.84 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.82 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.79 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.78 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.73 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.72 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.71 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.71 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.7 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.7 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.7 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.67 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.66 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.66 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.64 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.64 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.63 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.63 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.62 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.58 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.56 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.56 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.55 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.54 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.53 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.53 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.52 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.52 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.51 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.51 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.51 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.5 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.5 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.5 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.5 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.48 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.47 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.47 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.47 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.46 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.46 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.45 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.45 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.43 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.43 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.41 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.4 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.4 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.39 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.37 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.36 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.35 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.34 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.34 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.34 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.33 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.32 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.32 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.31 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.3 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.29 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.29 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.28 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.28 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.28 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.27 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.27 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.26 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.26 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.26 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.25 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.25 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.25 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.24 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.23 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.23 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.22 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.21 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.21 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.21 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.21 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.2 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.2 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.2 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.18 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.18 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.18 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.18 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.17 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 98.17 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.15 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.15 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.15 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.15 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.14 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.14 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.14 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.14 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.13 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.13 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.12 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.12 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 98.11 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.11 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.1 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.1 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.09 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.09 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.09 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 98.07 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.07 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.06 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.06 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.05 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 98.03 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.03 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 98.02 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.02 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 98.01 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.0 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.0 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.0 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.0 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.99 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.99 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.99 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.98 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.98 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.97 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.96 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.95 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.94 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.93 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.92 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.92 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.92 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.92 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.92 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.91 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.9 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.9 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.89 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.88 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.88 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.87 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.86 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.86 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.85 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.85 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.84 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.84 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.84 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.83 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.83 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.83 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.82 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.82 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.8 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.8 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.79 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.78 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.77 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.75 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.75 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.73 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.73 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.73 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.72 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.72 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.72 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.67 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.66 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.66 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.66 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.64 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.64 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.63 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.63 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 97.62 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.61 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.61 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.6 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.58 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.58 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.57 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.56 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.56 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.56 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.54 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.53 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.53 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.52 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.52 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.51 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.5 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.49 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.49 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.48 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.48 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.46 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.46 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.45 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.42 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.41 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.41 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.39 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.39 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.38 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.38 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.38 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.37 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.36 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.35 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.32 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.32 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.28 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.28 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.27 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.27 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.26 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.25 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.18 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.18 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.18 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.16 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.16 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.16 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.14 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.08 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.06 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.04 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.04 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.0 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.96 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 96.92 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.91 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 96.9 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.87 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 96.86 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.85 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 96.85 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.78 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.78 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.7 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.65 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 96.65 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.61 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.52 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.51 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.49 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 96.39 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 96.36 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 96.32 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.23 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.18 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.14 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.09 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.05 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.91 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.76 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.73 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 95.69 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 95.55 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.54 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 95.52 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 95.31 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.31 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.19 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 95.15 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 95.05 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.0 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 94.83 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 94.75 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.7 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.66 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.53 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.52 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 94.31 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 94.29 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 94.23 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 94.22 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 94.08 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 94.06 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.97 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.93 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.83 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 93.83 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.81 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 93.68 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 93.66 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 93.65 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 93.6 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.58 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 93.55 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.54 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 93.48 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 93.44 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.43 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.43 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 93.41 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 93.41 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 93.4 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 93.38 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.32 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 93.23 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.22 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 93.2 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 93.16 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 93.05 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.01 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.89 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 92.87 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 92.86 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 92.85 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 92.83 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 92.83 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 92.81 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 92.71 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 92.7 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.69 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 92.67 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 92.65 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.59 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 92.57 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 92.53 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 92.5 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 92.5 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.49 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 92.45 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 92.41 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 92.37 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.36 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 92.34 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 92.34 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 92.32 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 92.31 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 92.24 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 92.23 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 92.12 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 92.12 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 92.07 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 92.06 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 92.05 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.02 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 92.01 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 91.96 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 91.95 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.95 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 91.93 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 91.93 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 91.92 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.87 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 91.86 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 91.82 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 91.81 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 91.75 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 91.71 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 91.69 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.57 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 91.54 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 91.54 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 91.53 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 91.51 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 91.5 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 91.49 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 91.49 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 91.46 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 91.45 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 91.43 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 91.43 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 91.39 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 91.35 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 91.25 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 91.24 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 91.21 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 91.21 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 91.2 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 91.19 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 91.11 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 91.11 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 91.1 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 91.04 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 91.03 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 91.01 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 90.83 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.82 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.71 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 90.69 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 90.66 |
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-51 Score=406.60 Aligned_cols=336 Identities=34% Similarity=0.608 Sum_probs=277.3
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
+.+++|||||||+||+++|..|++.+++|+|||+++++.|+|+++..+.|..+..+...++.++. .....++.|+.++
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~--~~~~~~v~~~~~~ 117 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFA--LKKKGNVTYYEAE 117 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHH--TTCSSCEEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHH--HhhcCCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999988887777666655432 2345679999999
Q ss_pred eEeEeCCCCEEEEEEecCC---------cccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETVTDE---------LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKL 210 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g---------~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~ 210 (436)
|++||++.+.|.+...... ......+..++.||+||||||+.++.+++||.+++.+.++++.++..+++.+
T Consensus 118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l 197 (502)
T 4g6h_A 118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTF 197 (502)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHH
T ss_pred EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHH
Confidence 9999999999987642110 0000111237999999999999999999999988899999999999999888
Q ss_pred HHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHY 289 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~ 289 (436)
..++.....+......++...+++|||||++|+|+|.+|++++...+++.++......+|+|+++. .+++.+++++.+.
T Consensus 198 ~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~ 277 (502)
T 4g6h_A 198 AANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSY 277 (502)
T ss_dssp HHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHH
T ss_pred HHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHH
Confidence 666555444333333345556899999999999999999998877666666655566899999995 6889999999999
Q ss_pred HHHHHHhcCCEEEecc-eEEEeCCeEEE----cCC----cEEecceEEEecCCCCchh----cccCCCCCCCCCcEEeCC
Q 013810 290 ATTQLSKSGVRLVRGI-VKDVDSQKLIL----NDG----TEVPYGLLVWSTGVGPSTL----VKSLDLPKSPGGRIGIDE 356 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~-v~~i~~~~v~~----~~g----~~i~~D~vi~a~G~~p~~~----~~~~~l~~~~~G~i~vd~ 356 (436)
+.+.|++.||++++++ |++++++.+.+ .|| +++++|+||||+|.+|+++ ...+++..+.+|+|.||+
T Consensus 278 ~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~ 357 (502)
T 4g6h_A 278 AQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVND 357 (502)
T ss_dssp HHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCT
T ss_pred HHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECC
Confidence 9999999999999995 99999887655 355 3699999999999999853 445567778889999999
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+||++++|||||+|||+..+ .|++++.|.+||+.+|+||..
T Consensus 358 ~lq~~~~~~IfAiGD~a~~~-------~p~~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 358 FLQVKGSNNIFAIGDNAFAG-------LPPTAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp TSBBTTCSSEEECGGGEESS-------SCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEEcccCCC-------CCCchHHHHHHHHHHHHHHHH
Confidence 99977999999999999864 388999999999999999964
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=368.33 Aligned_cols=324 Identities=18% Similarity=0.245 Sum_probs=261.8
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
+|||||||||||++||.+|++.| .+|+|||+++++.|. +.++....+....... .+......+.+..++.++..
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~ 78 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRY--ALAYTPEKFYDRKQITVKTYH 78 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGG--TBCCCHHHHHHHHCCEEEETE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhh--hhhcCHHHHHHhcCCEEEeCC
Confidence 47999999999999999999977 569999999887765 3444333332221111 11111122344567887664
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|+.+|.+.+.+.+.....+. ..++.||+||||||++|+.|++|| ++.+..++..++..+.+.+..
T Consensus 79 ~V~~id~~~~~~~~~~~~~~~------~~~~~yd~lVIATGs~p~~p~i~g--~~~~~~~~~~~~~~l~~~~~~------ 144 (437)
T 4eqs_A 79 EVIAINDERQTVSVLNRKTNE------QFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA------ 144 (437)
T ss_dssp EEEEEETTTTEEEEEETTTTE------EEEEECSEEEECCCEEECCCCCCC--TTEECCSSHHHHHHHHHHHHH------
T ss_pred eEEEEEccCcEEEEEeccCCc------eEEEEcCEEEECCCCccccccccC--ceEEeeccHHHHHHHHHhhhc------
Confidence 899999999988876543332 236899999999999999999988 567778888888888776521
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhc
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (436)
..+++++|||+|++|+|+|..+++++ .+|+++++. .+++.+++++.+.+.+.+++.
T Consensus 145 ---------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~ 201 (437)
T 4eqs_A 145 ---------NQVDKVLVVGAGYVSLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDKR 201 (437)
T ss_dssp ---------HTCCEEEEECCSHHHHHHHHHHHHHT--------------CEEEEEESSSCCSTTSCGGGGHHHHHHHHHT
T ss_pred ---------cCCcEEEEECCccchhhhHHHHHhcC--------------CcceeeeeeccccccccchhHHHHHHHhhcc
Confidence 23458999999999999999999987 899999995 678889999999999999999
Q ss_pred CCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 298 GVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
||+++.+. |++++++.+.+++|+++++|.|++|+|++|+ .+++..|++++++|+|.||+++| |++|||||+|||+..
T Consensus 202 gV~i~~~~~v~~~~~~~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~-Ts~p~IyA~GDva~~ 280 (437)
T 4eqs_A 202 EIPYRLNEEINAINGNEITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFE-TNVPNIYAIGDIATS 280 (437)
T ss_dssp TCCEEESCCEEEEETTEEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCB-CSSTTEEECGGGEEE
T ss_pred ceEEEeccEEEEecCCeeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCcc-CCCCCEEEEEEccCc
Confidence 99999995 9999999999999999999999999999999 68889999999999999999999 999999999999998
Q ss_pred cc-CCCCccCCccHHHHHHHHHHHHhhhhhhc---------CCceeeecchhHHHHHHHhh
Q 013810 376 LE-STGKTVLPALAQVSYEQLHLFQKPSFLLA---------RNWCWFFDVCSLTSILNRLQ 426 (436)
Q Consensus 376 ~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~---------~~~~~~~~~~~~~~~~~~~~ 426 (436)
+. .++.+..+++++.|.+||+.||+||+... .+++.+++..+.++|++..+
T Consensus 281 ~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~ 341 (437)
T 4eqs_A 281 HYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNE 341 (437)
T ss_dssp EBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGG
T ss_pred ccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHH
Confidence 76 46777778899999999999999998532 23455777777777766543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=344.96 Aligned_cols=300 Identities=20% Similarity=0.320 Sum_probs=246.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCCe--EEEEcCCCcceec-chhh-hhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~--v~lie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
++|||||||+||++||..|++.|++ |+|||+++++.|. |.+. ....+......+ .. ...+....++.++.+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~----~~~~~~~~~i~~~~~ 77 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LA----EADWYGEARIDMLTG 77 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SS----CTTHHHHTTCEEEES
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cC----CHHHHHHCCCEEEeC
Confidence 5899999999999999999999987 9999999988775 3333 344443333332 11 122334568999888
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
+|+.++...+.+.+. ++. ++.||+||||||+.|+.|++||.+ ++++++++..++..+...+
T Consensus 78 ~~v~~id~~~~~v~~~---~g~--------~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~~------ 140 (410)
T 3ef6_A 78 PEVTALDVQTRTISLD---DGT--------TLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSW------ 140 (410)
T ss_dssp CCEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHHC------
T ss_pred CEEEEEECCCCEEEEC---CCC--------EEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHHh------
Confidence 999999998888663 565 899999999999999999999986 6778888999888877653
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC-cccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-SFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~-~~~~~~~~~~~~~l 294 (436)
..+++++|||+|++|+|+|..+.+.+ .+|+++++.+ +++ .+++++.+.+.+.+
T Consensus 141 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l 195 (410)
T 3ef6_A 141 -----------TSATRLLIVGGGLIGCEVATTARKLG--------------LSVTILEAGDELLVRVLGRRIGAWLRGLL 195 (410)
T ss_dssp -----------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSHHHHCHHHHHHHHHHH
T ss_pred -----------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCccchhhcCHHHHHHHHHHH
Confidence 33459999999999999999999876 8999999964 444 47889999999999
Q ss_pred HhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 295 SKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
++.||+++.+. |++++.+ .|+++||++++||.||+|+|++|+ ++++.++++.+ +| |.||+++| |+.|+|||
T Consensus 196 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~-t~~~~IyA 272 (410)
T 3ef6_A 196 TELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACD-RG-VIVDHCGA-TLAKGVFA 272 (410)
T ss_dssp HHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBS-SS-EECCTTSB-CSSTTEEE
T ss_pred HHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCccC-Ce-EEEccCee-ECCCCEEE
Confidence 99999999984 9888764 688999999999999999999999 68899999887 55 99999999 89999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-----CCceee
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-----RNWCWF 412 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-----~~~~~~ 412 (436)
+|||+..+...|.+..+.++..|..||+.||+||.... .+++|.
T Consensus 273 ~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~ 321 (410)
T 3ef6_A 273 VGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVSAPQLPVSWT 321 (410)
T ss_dssp CGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCCCCCCBCCEEEE
T ss_pred EEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCCCCCCCCCeeEE
Confidence 99999976644555567789999999999999998543 456665
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=344.07 Aligned_cols=298 Identities=17% Similarity=0.255 Sum_probs=244.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee-cchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
+++||||||||+||++||..|+..+.+|+|||+++++.| .|.++..+.+.....++.... ..+....++.++.+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~----~~~~~~~~i~~~~~~ 83 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKK----NDWYEKNNIKVITSE 83 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSC----HHHHHHTTCEEECSC
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCC----HHHHHHCCCEEEeCC
Confidence 457899999999999999999888999999999998876 566766666554444332222 22344568888876
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+|+.+|++.+.+.+. +|. ++.||+||||||++|+.|++||.+ +++++++.+++..+...+
T Consensus 84 ~V~~id~~~~~v~~~---~g~--------~~~yd~lvlAtG~~p~~p~i~G~~-~v~~~~~~~d~~~l~~~l-------- 143 (385)
T 3klj_A 84 FATSIDPNNKLVTLK---SGE--------KIKYEKLIIASGSIANKIKVPHAD-EIFSLYSYDDALKIKDEC-------- 143 (385)
T ss_dssp CEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECCCCCTTCS-CEECCSSHHHHHHHHHHH--------
T ss_pred EEEEEECCCCEEEEC---CCC--------EEECCEEEEecCCCcCCCCCCCCC-CeEEeCCHHHHHHHHHHh--------
Confidence 899999999888763 665 899999999999999999999986 888899999999888765
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHHHh
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLSK 296 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l~~ 296 (436)
..+++|+|||+|++|+|+|..|++.+ .+|+++++. .+++. +++++.+.+.+.+++
T Consensus 144 ---------~~~~~vvVIGgG~~g~E~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~ 200 (385)
T 3klj_A 144 ---------KNKGKAFIIGGGILGIELAQAIIDSG--------------TPASIGIILEYPLERQLDRDGGLFLKDKLDR 200 (385)
T ss_dssp ---------HHHSCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSSCTTTSCHHHHHHHHHHHHT
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHHHh
Confidence 23459999999999999999999877 899999995 45654 899999999999999
Q ss_pred cCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 297 SGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
.||+++.+. +.++ |+++++|.||+|+|++|+ ++++.++++.+ +| |.||+++| |+.|+|||+|||+.
T Consensus 201 ~gV~~~~~~~v~~i---------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~g-i~vd~~~~-t~~~~IyA~GD~a~ 268 (385)
T 3klj_A 201 LGIKIYTNSNFEEM---------GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RG-ILVNDHME-TSIKDIYACGDVAE 268 (385)
T ss_dssp TTCEEECSCCGGGC---------HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SS-EEECTTCB-CSSTTEEECGGGEE
T ss_pred CCCEEEeCCEEEEc---------CeEEecCeEEECcCcccChhhhhhcCCCcC-CC-EEECCCcc-cCCCCEEEEEeeEe
Confidence 999999984 6665 678999999999999999 68888898876 45 99999999 89999999999998
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhhc------CCceee--ecchhHHHHH
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLLA------RNWCWF--FDVCSLTSIL 422 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~------~~~~~~--~~~~~~~~~~ 422 (436)
.+. ..++++..|..||+.||+||.... .+++|+ ++......|+
T Consensus 269 ~~~-----~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~~G~ 319 (385)
T 3klj_A 269 FYG-----KNPGLINIANKQGEVAGLNACGEDASYSEIIPSPILKVSGISIISCGD 319 (385)
T ss_dssp ETT-----BCCCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCCEEEETTEEEEEESC
T ss_pred cCC-----CcccHHHHHHHHHHHHHHHhcCCCcCCCCCCCcEEEEeCCCcEEEEcC
Confidence 542 126789999999999999998532 356666 5655555553
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=341.60 Aligned_cols=303 Identities=22% Similarity=0.401 Sum_probs=247.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe--EEEEcCCCcceec-chhh-hhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~--v~lie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
++++|||||||+||++||..|++.|++ |+|||+++++.|. |.+. ....+......+.. ....+....++.++
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~ 83 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICI----RPAQFWEDKAVEMK 83 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBS----SCHHHHHHTTEEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhcc----CCHHHHHHCCcEEE
Confidence 357999999999999999999999987 9999999987775 3332 33333333322211 12223445788998
Q ss_pred Ee-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhc
Q 013810 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
.+ +|+.++...+.+.+. ++. .+.||+||||||+.|+.|++||.+ .++++..+..++..+...+
T Consensus 84 ~~~~v~~id~~~~~v~~~---~g~--------~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~---- 148 (415)
T 3lxd_A 84 LGAEVVSLDPAAHTVKLG---DGS--------AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAEL---- 148 (415)
T ss_dssp ETCCEEEEETTTTEEEET---TSC--------EEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHH----
T ss_pred eCCEEEEEECCCCEEEEC---CCC--------EEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHh----
Confidence 87 999999998888763 565 899999999999999999999986 6778888999988887765
Q ss_pred cccCCCCCChhhhcc-cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSR-LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYAT 291 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~-~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~ 291 (436)
.. +++++|||+|++|+|+|..+.+.+ .+|+++++. .+++ .+++++.+.+.
T Consensus 149 -------------~~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~l~~~~~~~~~~~l~ 201 (415)
T 3lxd_A 149 -------------DAGAKNAVVIGGGYIGLEAAAVLTKFG--------------VNVTLLEALPRVLARVAGEALSEFYQ 201 (415)
T ss_dssp -------------HTTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHH
T ss_pred -------------hhcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCchhhhhcCHHHHHHHH
Confidence 22 459999999999999999999876 899999995 4554 47899999999
Q ss_pred HHHHhcCCEEEecc-eEEEeCC-----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
+.+++.||+++.+. |++++.+ .|++++|++++||.||+|+|++|+ ++++.++++.+ +| |.||+++| |+.|
T Consensus 202 ~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~~~-t~~~ 278 (415)
T 3lxd_A 202 AEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NG-VDVDEFCR-TSLT 278 (415)
T ss_dssp HHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SS-EECCTTCB-CSST
T ss_pred HHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CC-EEECCCCC-cCCC
Confidence 99999999999984 8888653 578899999999999999999999 58888999877 55 99999999 8999
Q ss_pred CEEEeccccccccC-C-CCccCCccHHHHHHHHHHHHhhhhhhc-----CCceee
Q 013810 365 DVFAVGDCSGYLES-T-GKTVLPALAQVSYEQLHLFQKPSFLLA-----RNWCWF 412 (436)
Q Consensus 365 ~Vya~GD~~~~~~~-~-~~~~~~~~~~~A~~~g~~aa~~i~~~~-----~~~~~~ 412 (436)
+|||+|||+..+.. . |.+.+..++..|..||+.||+||.... .++||.
T Consensus 279 ~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~ 333 (415)
T 3lxd_A 279 DVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWS 333 (415)
T ss_dssp TEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCCCCCCCCEEEE
T ss_pred CEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCCCCCCCCeeEe
Confidence 99999999998763 3 666667789999999999999998643 457775
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-43 Score=343.54 Aligned_cols=307 Identities=21% Similarity=0.298 Sum_probs=242.5
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
++|||||||+||++||.+|++.+ ++|||||+++++.|+|.++....|.....++..++..+ ....+++++.++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~----~~~~gv~~i~~~v 78 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPL----LPKFNIEFINEKA 78 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTT----GGGGTEEEECSCE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHH----HHHCCcEEEEeEE
Confidence 68999999999999999998854 78999999999999999998888888777766665554 3456899999999
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (436)
++||++.+.|.+. +|+ +++||+||||||+++. +++||.+++.+.+++.+++.++++.+...
T Consensus 79 ~~Id~~~~~V~~~---~g~--------~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~------- 139 (430)
T 3hyw_A 79 ESIDPDANTVTTQ---SGK--------KIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQEL------- 139 (430)
T ss_dssp EEEETTTTEEEET---TCC--------EEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHH-------
T ss_pred EEEECCCCEEEEC---CCC--------EEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhh-------
Confidence 9999999998764 666 8999999999999864 57999888888999999999988876421
Q ss_pred CCChhhhcccCcEEEECCCh------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----cccHHHHHHH
Q 013810 221 GISEEEKSRLLHCVVVGGGP------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLRHYA 290 (436)
Q Consensus 221 ~~~~~~~~~~~~vvViG~G~------~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----~~~~~~~~~~ 290 (436)
...+.++|+|++. .+.|+|..+.... ++ ...+...+|++++..+.+. ...+...+.+
T Consensus 140 -------~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l----~~--~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l 206 (430)
T 3hyw_A 140 -------YANPGPVVIGAIPGVSCFGPAYEFALMLHYEL----KK--RGIRYKVPMTFITSEPYLGHFGVGGIGASKRLV 206 (430)
T ss_dssp -------HHSCCCEEEEECTTCCCCHHHHHHHHHHHHHH----HH--TTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHH
T ss_pred -------ccCCceEEEeCCCcEEEhHHHHHHHHHHHHHH----HH--hcccccceeeeecccchhhhccchhhHHHHHHH
Confidence 1122455665543 2344444444322 12 1223457899998865443 3456778889
Q ss_pred HHHHHhcCCEEEecc-eEEEeCCeEEEcC----CcEEecceEEEecCCCCchhcccCCC--CCCCCCcEEeCCCCCCCCC
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQKLILND----GTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~~v~~~~----g~~i~~D~vi~a~G~~p~~~~~~~~l--~~~~~G~i~vd~~~~~t~~ 363 (436)
++.++++||+++.+. |++++.+++.+++ ++++++|++++++|++|++++...++ ..+.+|+|.||++||+|++
T Consensus 207 ~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~ 286 (430)
T 3hyw_A 207 EDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTY 286 (430)
T ss_dssp HHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSS
T ss_pred HHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCC
Confidence 999999999999995 9999999888764 34799999999999999987776654 4456788999999999999
Q ss_pred CCEEEeccccccccCCCC---ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 364 QDVFAVGDCSGYLESTGK---TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~---~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|||||+|||+..++..+. ...|++++.|.+||+.+|+||...
T Consensus 287 ~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~ 331 (430)
T 3hyw_A 287 KNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVND 331 (430)
T ss_dssp TTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999998765443 225889999999999999999854
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=338.05 Aligned_cols=301 Identities=21% Similarity=0.381 Sum_probs=245.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhh-hhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
++|||||||+||++||..|++.|+ +|+|||+++++.|. |.+. ....+......+... ...+....++.++..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~----~~~~~~~~~i~~~~~ 77 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFR----PEKFFQDQAIELISD 77 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSS----CHHHHHHTTEEEECC
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCC----CHHHHHhCCCEEEEE
Confidence 689999999999999999999998 89999999987774 3332 334333333222221 122334567888889
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcccc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
+|+.++.+.+.+.+. ++. .+.||+||+|||+.|+.|++||.+ .++++..+..++..+...+
T Consensus 78 ~v~~id~~~~~v~~~---~g~--------~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~~------- 139 (404)
T 3fg2_P 78 RMVSIDREGRKLLLA---SGT--------AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQRM------- 139 (404)
T ss_dssp CEEEEETTTTEEEES---SSC--------EEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHHG-------
T ss_pred EEEEEECCCCEEEEC---CCC--------EEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHHh-------
Confidence 999999998887763 565 899999999999999999999976 6778888888888877654
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHHHH
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLS 295 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~ 295 (436)
..+++++|||+|++|+|+|..+.+.+ .+|+++++. .+++ .+++++.+.+.+.++
T Consensus 140 ----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~ 195 (404)
T 3fg2_P 140 ----------PDKKHVVVIGAGFIGLEFAATARAKG--------------LEVDVVELAPRVMARVVTPEISSYFHDRHS 195 (404)
T ss_dssp ----------GGCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHHHHHHH
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCcchhhccCHHHHHHHHHHHH
Confidence 33469999999999999999998876 899999995 4444 478999999999999
Q ss_pred hcCCEEEec-ceEEEeCC-----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 296 KSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
+.||+++.+ .|++++.+ .|.+++|++++||.||+|+|++|+ ++++.++++.+ +| |.||+++| |+.|+|||
T Consensus 196 ~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~~~~-t~~~~iya 272 (404)
T 3fg2_P 196 GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQQLL-TSDPHISA 272 (404)
T ss_dssp HTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECTTSB-CSSTTEEE
T ss_pred hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECCCcc-cCCCCEEE
Confidence 999999999 48888653 578899999999999999999999 58889999887 56 99999999 89999999
Q ss_pred ecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhc-----CCceee
Q 013810 369 VGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLA-----RNWCWF 412 (436)
Q Consensus 369 ~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-----~~~~~~ 412 (436)
+|||+..+. ..|.+....++..|..||+.||+||.... .+|||.
T Consensus 273 ~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~p~~~~ 322 (404)
T 3fg2_P 273 IGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAKPYDGYPWFWS 322 (404)
T ss_dssp CGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCCCCCCCCEEEE
T ss_pred eecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCCCCCCCCceEe
Confidence 999999765 34555556789999999999999998543 467776
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=334.76 Aligned_cols=284 Identities=25% Similarity=0.418 Sum_probs=234.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.||+|||||+||++||..|++.| +|+|||+++...|. +.+.....+......+.... ..+....++.++.+ +|
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~----~~~~~~~~v~~~~g~~v 83 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYS----LDWYRKRGIEIRLAEEA 83 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSC----HHHHHHHTEEEECSCCE
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCC----HHHHHhCCcEEEECCEE
Confidence 58999999999999999999999 99999999876553 55554444443333322222 22233467888887 69
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (436)
+.+|++.+.+. . ++. ++.||+||||||++|+.|++|| .++++++++.+++.++.+.+
T Consensus 84 ~~id~~~~~V~-~---~g~--------~~~~d~lViATGs~p~~p~i~G-~~~v~~~~~~~~~~~l~~~~---------- 140 (367)
T 1xhc_A 84 KLIDRGRKVVI-T---EKG--------EVPYDTLVLATGARAREPQIKG-KEYLLTLRTIFDADRIKESI---------- 140 (367)
T ss_dssp EEEETTTTEEE-E---SSC--------EEECSEEEECCCEEECCCCSBT-GGGEECCCSHHHHHHHHHHH----------
T ss_pred EEEECCCCEEE-E---CCc--------EEECCEEEECCCCCCCCCCCCC-cCCEEEEcCHHHHHHHHHHh----------
Confidence 99999877765 2 555 8999999999999999999999 46778888888888877654
Q ss_pred CCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCC
Q 013810 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGV 299 (436)
Q Consensus 221 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV 299 (436)
..+++++|||+|++|+|+|..|++++ .+|+++++. .+++ +++++.+.+.+.+++.||
T Consensus 141 -------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV 198 (367)
T 1xhc_A 141 -------ENSGEAIIIGGGFIGLELAGNLAEAG--------------YHVKLIHRGAMFLG-LDEELSNMIKDMLEETGV 198 (367)
T ss_dssp -------HHHSEEEEEECSHHHHHHHHHHHHTT--------------CEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTE
T ss_pred -------hcCCcEEEECCCHHHHHHHHHHHhCC--------------CEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCC
Confidence 12358999999999999999999876 899999995 5667 999999999999999999
Q ss_pred EEEec-ceEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccccc
Q 013810 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377 (436)
Q Consensus 300 ~i~~~-~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~ 377 (436)
+++.+ +|++++.+.+++++|+ +++|.|++|+|++|+ ++++.++++.+ +| |.||+++| |+.|+|||+|||+....
T Consensus 199 ~i~~~~~v~~i~~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~g-i~Vd~~~~-t~~~~IyA~GD~a~~~~ 274 (367)
T 1xhc_A 199 KFFLNSELLEANEEGVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RG-ILIDDNFR-TSAKDVYAIGDCAEYSG 274 (367)
T ss_dssp EEECSCCEEEECSSEEEETTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SS-EECCTTSB-CSSTTEEECGGGEEBTT
T ss_pred EEEcCCEEEEEEeeEEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CC-EEECCCcc-cCCCCEEEeEeeeecCC
Confidence 99999 4999988889999998 999999999999999 58888898876 45 99999999 89999999999987421
Q ss_pred CCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 378 STGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 378 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
..++++..|..||+.||+||...
T Consensus 275 -----~~~~~~~~A~~qg~~aa~~i~g~ 297 (367)
T 1xhc_A 275 -----IIAGTAKAAMEQARVLADILKGE 297 (367)
T ss_dssp -----BCCCSHHHHHHHHHHHHHHHTTC
T ss_pred -----CCccHHHHHHHHHHHHHHHhcCC
Confidence 11468999999999999999864
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=342.92 Aligned_cols=327 Identities=22% Similarity=0.297 Sum_probs=240.2
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcccc-ccc---ccchhhcchhhhcCCCcE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEF-RSV---AEPIARIQPAISREPGSY 134 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~ 134 (436)
+++|+|||||+||++||..|++. |++|+|||+++.+.|.+. ++....+.... ..+ ...+......+....++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 47999999999999999999987 899999999998776532 33333332211 111 000222223333446777
Q ss_pred EEE-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHH
Q 013810 135 FFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 135 ~~~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~ 212 (436)
++. .+|+.++.+.+.+.+....+|. ...+.||+||||||+.|+.|++||.+ .++++..+..++..+...+.
T Consensus 83 ~~~~~~V~~id~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~- 155 (472)
T 3iwa_A 83 ALVETRAHAIDRAAHTVEIENLRTGE------RRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS- 155 (472)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCC-
T ss_pred EEECCEEEEEECCCCEEEEeecCCCC------EEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh-
Confidence 754 6899999999998887533343 22689999999999999999999985 66777888888877765431
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHY 289 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~ 289 (436)
. ..+++++|||+|++|+|+|..+.++ + .+|+++++. .+++ .+++++.+.
T Consensus 156 ----~----------~~~~~vvViGgG~~g~e~A~~l~~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~ 207 (472)
T 3iwa_A 156 ----A----------GEVSKAVIVGGGFIGLEMAVSLADMWG--------------IDTTVVELADQIMPGFTSKSLSQM 207 (472)
T ss_dssp ----T----------TSCSEEEEECCSHHHHHHHHHHHHHHC--------------CEEEEECSSSSSSTTTSCHHHHHH
T ss_pred ----c----------CCCCEEEEECCCHHHHHHHHHHHHhcC--------------CcEEEEEccCcccccccCHHHHHH
Confidence 0 1235999999999999999999987 6 899999995 5677 889999999
Q ss_pred HHHHHHhcCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 290 ATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
+.+.+++.||+++.+ +|.+++. +. +++.+|+++++|.||+|+|++|+ ++++.+|++++++|+|.||+++| |+.
T Consensus 208 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~-t~~ 286 (472)
T 3iwa_A 208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMR-TSD 286 (472)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCB-CSS
T ss_pred HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcc-cCC
Confidence 999999999999999 4888865 22 67789999999999999999999 67888899999999999999999 899
Q ss_pred CCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhc------CCc--eeeecchhHHHHHHH
Q 013810 364 QDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLA------RNW--CWFFDVCSLTSILNR 424 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~------~~~--~~~~~~~~~~~~~~~ 424 (436)
|+|||+|||+..+.. +|.+.+++++..|..||+.||+||.... .++ +.+|+..+..+|++.
T Consensus 287 ~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~~e 356 (472)
T 3iwa_A 287 PDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAGLTV 356 (472)
T ss_dssp TTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEECCH
T ss_pred CCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEECCH
Confidence 999999999987663 4666667899999999999999998532 122 335666666666443
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=334.56 Aligned_cols=293 Identities=23% Similarity=0.331 Sum_probs=236.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe--EEEEcCCCcceec-chhh-hhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~--v~lie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||+||++||..|++.|++ |+|||+++.+.|. +.+. ....+.. .... .+ . .....++.++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~-~~~~~~v~~~ 77 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGD-AEKI--RL----D-CKRAPEVEWL 77 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCC-GGGS--BC----C-CTTSCSCEEE
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCc-hhhh--hH----H-HHHHCCCEEE
Confidence 357999999999999999999998884 9999999876654 2222 1222211 1111 01 1 2345688888
Q ss_pred Ee-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC-CCCccccccccChHHHHHHHHHHHHhc
Q 013810 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HGVKENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
.+ +|+.++.+.+.+.+. ++. .+.||+||||||++|+.|++ ||.+++++++.+.+++..+.+.+
T Consensus 78 ~~~~v~~i~~~~~~v~~~---~g~--------~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~~---- 142 (408)
T 2gqw_A 78 LGVTAQSFDPQAHTVALS---DGR--------TLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL---- 142 (408)
T ss_dssp ETCCEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTTC----
T ss_pred cCCEEEEEECCCCEEEEC---CCC--------EEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHHh----
Confidence 87 599999988877653 565 79999999999999999999 99866677788888887765432
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~ 292 (436)
..+++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++ .+++++.+.+.+
T Consensus 143 -------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 195 (408)
T 2gqw_A 143 -------------RPQSRLLIVGGGVIGLELAATARTAG--------------VHVSLVETQPRLMSRAAPATLADFVAR 195 (408)
T ss_dssp -------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHH
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCcccccccCHHHHHHHHH
Confidence 22459999999999999999999876 899999995 4666 488999999999
Q ss_pred HHHhcCCEEEec-ceEEEeCCeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 293 QLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 293 ~l~~~gV~i~~~-~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.+++.||+++.+ +|.+++++.|++.+|+++++|.||+|+|++|+ ++++.++++.+ +| |.||+++| |+.|+|||+|
T Consensus 196 ~l~~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~-t~~~~IyA~G 272 (408)
T 2gqw_A 196 YHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDAYGR-TTCPDVYALG 272 (408)
T ss_dssp HHHHTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCTTCB-CSSTTEEECG
T ss_pred HHHHcCcEEEeCCEEEEEECCEEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECCCCc-cCCCCEEEEE
Confidence 999999999999 48888855888999999999999999999999 68888898886 56 99999999 8999999999
Q ss_pred cccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+.. .|.+.++.++..|..||+.||+||....
T Consensus 273 D~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 309 (408)
T 2gqw_A 273 DVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPT 309 (408)
T ss_dssp GGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCC
Confidence 99997542 3444445688999999999999998543
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=348.10 Aligned_cols=327 Identities=21% Similarity=0.295 Sum_probs=260.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
+++++|||||||+|||+||..|++. |++|+|||+++.+.|.+ .++....+...... ..+......+....++.++
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~--~~~~~~~~~~~~~~gi~v~ 111 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQ--KLLVQTVERMSKRFNLDIR 111 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGG--GGBSSCHHHHHHHTTCEEE
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChH--HhhccCHHHHHHhcCcEEE
Confidence 4568999999999999999999987 89999999999887764 33333333322111 1122222333445677775
Q ss_pred E-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCC-c-cccccccChHHHHHHHHHHHHh
Q 013810 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-K-ENATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 137 ~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~-~-~~~~~~~~~~~~~~~~~~~~~~ 213 (436)
. .+|+.++.+.+.+.+....++. ...+.||+||||||++|+.|++||. + ..+++..+..++..+...+..
T Consensus 112 ~~~~V~~id~~~~~v~v~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~- 184 (588)
T 3ics_A 112 VLSEVVKINKEEKTITIKNVTTNE------TYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE- 184 (588)
T ss_dssp CSEEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHH-
T ss_pred ECCEEEEEECCCCEEEEeecCCCC------EEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhh-
Confidence 4 6999999999998887544443 2268899999999999999999998 4 567888888888877766521
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATT 292 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~ 292 (436)
..+++++|||+|++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+
T Consensus 185 --------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~ 236 (588)
T 3ics_A 185 --------------KKPRHATVIGGGFIGVEMVENLRERG--------------IEVTLVEMANQVMPPIDYEMAAYVHE 236 (588)
T ss_dssp --------------HCCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred --------------cCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCcccccCCHHHHHHHHH
Confidence 23459999999999999999999876 899999994 5788899999999999
Q ss_pred HHHhcCCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 293 QLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
.+++.||+++.+. |.+++. +.|.+.+|+++++|.||+|+|++|+ ++++.+|++++++|+|.||+++| |+.|+|||
T Consensus 237 ~l~~~GV~i~~~~~v~~i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~-t~~~~IyA 315 (588)
T 3ics_A 237 HMKNHDVELVFEDGVDALEENGAVVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQ-TSDPHIYA 315 (588)
T ss_dssp HHHHTTCEEECSCCEEEEEGGGTEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSB-CSSTTEEE
T ss_pred HHHHcCCEEEECCeEEEEecCCCEEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccc-cCCCCEEE
Confidence 9999999999984 998876 6799999999999999999999999 58888999999999999999999 89999999
Q ss_pred eccccccccC-CCCccCCccHHHHHHHHHHHHhhhhh-hc------CCc--eeeecchhHHHHHHH
Q 013810 369 VGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFL-LA------RNW--CWFFDVCSLTSILNR 424 (436)
Q Consensus 369 ~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~-~~------~~~--~~~~~~~~~~~~~~~ 424 (436)
+|||+..+.. +|.+..++++..|..||+.||+||.. .. .+. +.+++..+..+|++.
T Consensus 316 ~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~a~vGlte 381 (588)
T 3ics_A 316 IGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNE 381 (588)
T ss_dssp CGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEEEEEEECCH
T ss_pred eeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeEEEEecCCH
Confidence 9999986653 46655678999999999999999987 22 122 235677776666544
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=346.40 Aligned_cols=324 Identities=22% Similarity=0.322 Sum_probs=254.4
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecc-hhhhhhcCcccccccccchhhcchhhhcCCCcEEE-Ee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 138 (436)
++|+|||||+||++||..|++. +++|+|||+++.+.|.+ .++....+..... ...+.+....+....++.++ ..
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 79 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQR--SALVLQTPESFKARFNVEVRVKH 79 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCG--GGGBCCCHHHHHHHHCCEEETTE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCCh--HHhhccCHHHHHHhcCcEEEECC
Confidence 6899999999999999999987 88999999999887764 2333333322111 11112222223334577775 46
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcccc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
+|+.++.+.+.+.+....++. ..++.||+||||||++|+.|++||.+ .++++..+..++..+.+.+..
T Consensus 80 ~V~~id~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~----- 148 (565)
T 3ntd_A 80 EVVAIDRAAKLVTVRRLLDGS------EYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM----- 148 (565)
T ss_dssp EEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHH-----
T ss_pred EEEEEECCCCEEEEEecCCCC------eEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhh-----
Confidence 999999999999887543343 12689999999999999999999985 667888888888777765421
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHh
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (436)
..+++|+|||+|++|+|+|..|++.+ .+|+++++. .+++.+++++.+.+.+.+++
T Consensus 149 ----------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 204 (565)
T 3ntd_A 149 ----------NNVEHATVVGGGFIGLEMMESLHHLG--------------IKTTLLELADQVMTPVDREMAGFAHQAIRD 204 (565)
T ss_dssp ----------TTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHH
T ss_pred ----------CCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEEcCCccchhcCHHHHHHHHHHHHH
Confidence 23459999999999999999999876 899999995 57788899999999999999
Q ss_pred cCCEEEecc-eEEEeC---------------------C--eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCc
Q 013810 297 SGVRLVRGI-VKDVDS---------------------Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGR 351 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~---------------------~--~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~ 351 (436)
.||+++.+. +.+++. + .+++.+|+++++|.||+|+|++|+ ++++.+|++++++|+
T Consensus 205 ~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~ 284 (565)
T 3ntd_A 205 QGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGG 284 (565)
T ss_dssp TTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSS
T ss_pred CCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCC
Confidence 999999984 887764 2 366788999999999999999999 678888999999999
Q ss_pred EEeCCCCCCCCCCCEEEecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcCC--------ceeeecchhHHHHH
Q 013810 352 IGIDEWLRVPSVQDVFAVGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLARN--------WCWFFDVCSLTSIL 422 (436)
Q Consensus 352 i~vd~~~~~t~~~~Vya~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--------~~~~~~~~~~~~~~ 422 (436)
|.||+++| |+.|+|||+|||+..+. .+|.+..+++++.|..||+.||+||...... ++.+|+..+..+|+
T Consensus 285 i~vd~~~~-t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~ 363 (565)
T 3ntd_A 285 IKVNAMMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLAVGATGK 363 (565)
T ss_dssp BCCCTTCB-CSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEEC
T ss_pred EEECCCcc-cCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecC
Confidence 99999999 89999999999998765 3566656789999999999999999854321 23357776666664
Q ss_pred HH
Q 013810 423 NR 424 (436)
Q Consensus 423 ~~ 424 (436)
+.
T Consensus 364 ~e 365 (565)
T 3ntd_A 364 NE 365 (565)
T ss_dssp CH
T ss_pred CH
Confidence 43
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=335.62 Aligned_cols=319 Identities=22% Similarity=0.268 Sum_probs=242.6
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+++|+|||||+||++||..|++. +++|+|||+++.+.+.+. ++....+....... .......+.+..++.++.+
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~~~gi~v~~~ 79 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKL---MYYPPEVFIKKRGIDLHLN 79 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---------------------------CTHHHHTTCEEETT
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHh---hhcCHHHHHHhcCcEEEec
Confidence 47999999999999999999987 889999999987766542 22222222122111 1111122334567888877
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
+|+.++.....+.+ .++. .++.||+||||||+.|+.|++||.+ .++++..+..++..+.+.+.
T Consensus 80 ~~v~~i~~~~~~v~~---~~g~-------~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~----- 144 (449)
T 3kd9_A 80 AEVIEVDTGYVRVRE---NGGE-------KSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYME----- 144 (449)
T ss_dssp CEEEEECSSEEEEEC---SSSE-------EEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHS-----
T ss_pred CEEEEEecCCCEEEE---CCce-------EEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHH-----
Confidence 89999877655532 2331 2789999999999999999999986 56777888888877776531
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l 294 (436)
...+++++|||+|++|+|+|..|++.+ .+|+++++. .+++. +++++.+.+.+.+
T Consensus 145 ----------~~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 200 (449)
T 3kd9_A 145 ----------KYKVENVVIIGGGYIGIEMAEAFAAQG--------------KNVTMIVRGERVLRRSFDKEVTDILEEKL 200 (449)
T ss_dssp ----------SSCCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEcCCccchhhcCHHHHHHHHHHH
Confidence 013459999999999999999999876 899999995 56776 8999999999999
Q ss_pred HhcCCEEEecc-eEEEeCCe---EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEe
Q 013810 295 SKSGVRLVRGI-VKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~ 369 (436)
++. |+++.+. +.+++.+. ..+.+++++++|.|++|+|++|+ ++++.+|++++++|+|.||+++| |+.|+|||+
T Consensus 201 ~~~-v~i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~-t~~~~IyA~ 278 (449)
T 3kd9_A 201 KKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQ-TSVENVYAA 278 (449)
T ss_dssp TTT-SEEEESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCB-CSSTTEEEC
T ss_pred HhC-cEEEeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCc-cCCCCEEEe
Confidence 999 9999985 88887542 34667889999999999999999 68888999999999999999999 899999999
Q ss_pred ccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHHHH
Q 013810 370 GDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 370 GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~~~ 424 (436)
|||+..++. +|.+.+++++..|..||+.||+||.... .+++.+++..+..+|++.
T Consensus 279 GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e 342 (449)
T 3kd9_A 279 GDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTE 342 (449)
T ss_dssp STTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCH
T ss_pred eeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCH
Confidence 999987653 5666668899999999999999998532 224456777777666443
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=333.06 Aligned_cols=316 Identities=18% Similarity=0.249 Sum_probs=234.2
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcc-cccccccchhhcchhhhcCCCcEEEE-
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYFFL- 137 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (436)
+||+|||||+||++||.+|++. |++|+|||+++.+.|.+. +.....+.. ...++... ........++.++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~gi~~~~~ 78 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYI----TEEELRRQKIQLLLN 78 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCC----CHHHHHHTTEEEECS
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcC----CHHHHHHCCCEEEEC
Confidence 6999999999999999999987 899999999998776542 222222211 11221111 11122345777754
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
.+|+.++.+.+.+.+....++. .+.||+||||||++|..|++||.+ .++++..++.+...+.+..
T Consensus 79 ~~V~~id~~~~~v~v~~~~~~~--------~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~------ 144 (452)
T 3oc4_A 79 REVVAMDVENQLIAWTRKEEQQ--------WYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPLL------ 144 (452)
T ss_dssp CEEEEEETTTTEEEEEETTEEE--------EEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHHH------
T ss_pred CEEEEEECCCCEEEEEecCceE--------EEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHHH------
Confidence 5899999999988775222233 799999999999999999999986 5667776666655544432
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l 294 (436)
..+++++|||+|++|+|+|..+++++ .+|+++++. .+++. +++++.+.+.+.+
T Consensus 145 -----------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l 199 (452)
T 3oc4_A 145 -----------ENSQTVAVIGAGPIGMEAIDFLVKMK--------------KTVHVFESLENLLPKYFDKEMVAEVQKSL 199 (452)
T ss_dssp -----------HTCSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTCCHHHHHHHHHHH
T ss_pred -----------hcCCEEEEECCCHHHHHHHHHHHhCC--------------CeEEEEEccCccccccCCHHHHHHHHHHH
Confidence 23359999999999999999999876 899999995 56665 8999999999999
Q ss_pred HhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 295 SKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
++.||+++.+. |++++ +++ |.++++ ++++|.||+|+|++|+ ++++.. ++++++|+|.||+++| |+.|+|||
T Consensus 200 ~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~-t~~~~IyA 276 (452)
T 3oc4_A 200 EKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQ-TSVPNVFA 276 (452)
T ss_dssp HTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCB-CSSTTEEE
T ss_pred HHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCcc-CCCCCEEE
Confidence 99999999984 88887 333 556666 8999999999999999 465544 7888899999999999 89999999
Q ss_pred ecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcCC--------ceeeecchhHHHHHHH
Q 013810 369 VGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLARN--------WCWFFDVCSLTSILNR 424 (436)
Q Consensus 369 ~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~--------~~~~~~~~~~~~~~~~ 424 (436)
+|||+..+. .++++.+++++..|..||+.||+||...... +...|+..+.++|++.
T Consensus 277 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG~te 341 (452)
T 3oc4_A 277 IGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVGDYYLASTGLTE 341 (452)
T ss_dssp CGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEETTEEEEEEECCS
T ss_pred EEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEcCeeEEEecCCH
Confidence 999998654 3455555679999999999999999854321 2233555555555443
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=329.18 Aligned_cols=317 Identities=19% Similarity=0.277 Sum_probs=244.1
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcc---cccccccchhhcchhhhcCCCcEEE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL---EFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
+||+|||||+||++||..|++. |.+|+|||+++.+.|.+. +.....+.. ....+.... .......++.++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~gv~~~ 76 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSS----PEELSNLGANVQ 76 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCC----HHHHHHTTCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcC----HHHHHHcCCEEE
Confidence 4899999999999999999997 999999999987666532 222222221 122221111 122334578875
Q ss_pred Ee-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhc
Q 013810 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
.+ +|..++.+.+.+.+....+++ ...+.||+||||||++|+.|++||.+ .++++..++.+..++.+..
T Consensus 77 ~~~~v~~i~~~~~~v~v~~~~~g~------~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~---- 146 (452)
T 2cdu_A 77 MRHQVTNVDPETKTIKVKDLITNE------EKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEA---- 146 (452)
T ss_dssp ESEEEEEEEGGGTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHHG----
T ss_pred eCCEEEEEEcCCCEEEEEecCCCc------eEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHHh----
Confidence 54 689999888888876422221 11799999999999999999999986 5678888888887776643
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~ 292 (436)
..+++++|||+|++|+|+|..|.+++ .+|+++++. .+++ .+++++.+.+.+
T Consensus 147 -------------~~~~~vvViGgG~~g~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 199 (452)
T 2cdu_A 147 -------------PKAKTITIIGSGYIGAELAEAYSNQN--------------YNVNLIDGHERVLYKYFDKEFTDILAK 199 (452)
T ss_dssp -------------GGCSEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred -------------ccCCeEEEECcCHHHHHHHHHHHhcC--------------CEEEEEEcCCchhhhhhhhhHHHHHHH
Confidence 33459999999999999999998766 899999995 5666 689999999999
Q ss_pred HHHhcCCEEEecc-eEEEeC--CeE--EEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCE
Q 013810 293 QLSKSGVRLVRGI-VKDVDS--QKL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~--~~v--~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~V 366 (436)
.+++.||+++.+. |++++. +++ ...+|+++++|.||+|+|++|+ ++++.. ++++++|+|.||+++| |+.|+|
T Consensus 200 ~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~-t~~~~I 277 (452)
T 2cdu_A 200 DYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMH-SSNRDI 277 (452)
T ss_dssp HHHHTTCEEEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSB-CSSTTE
T ss_pred HHHHCCCEEEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcC-cCCCCE
Confidence 9999999999994 888864 433 2347889999999999999999 577776 8888899999999999 899999
Q ss_pred EEecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcC--------CceeeecchhHHHHH
Q 013810 367 FAVGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLAR--------NWCWFFDVCSLTSIL 422 (436)
Q Consensus 367 ya~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~--------~~~~~~~~~~~~~~~ 422 (436)
||+|||+..+. ..|++.+++++..|..||+.||+||..... ++..+|+..+..+|+
T Consensus 278 yA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~ 342 (452)
T 2cdu_A 278 FAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGI 342 (452)
T ss_dssp EECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEEC
T ss_pred EEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecC
Confidence 99999998654 345544578999999999999999985421 134446666655553
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=324.92 Aligned_cols=304 Identities=20% Similarity=0.266 Sum_probs=246.0
Q ss_pred CcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
++|||||||+||+++|..|++ .|++|+|||+++.+.+.|.+.....+.....++...+.+. ....++.++.++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~gv~~~~~~ 77 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEA----LPEKGIQFQEGT 77 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHH----TGGGTCEEEECE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHH----HhhCCeEEEEee
Confidence 689999999999999999999 8999999999999888877665555555544444444333 344688999999
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (436)
|+.++.+.+.+.+. ++.. +.+++.||+||+|||+.|+.|++||.++..++..+.+++..+.+.+..
T Consensus 78 v~~i~~~~~~V~~~---~g~~----~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l~~------- 143 (409)
T 3h8l_A 78 VEKIDAKSSMVYYT---KPDG----SMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKLES------- 143 (409)
T ss_dssp EEEEETTTTEEEEE---CTTS----CEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHHHH-------
T ss_pred EEEEeCCCCEEEEc---cCCc----ccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHHHH-------
Confidence 99999998888775 3320 012589999999999999999999987667778888888888877632
Q ss_pred CCCChhhhcccCcEEEECCCh-------------------------HHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEe
Q 013810 220 PGISEEEKSRLLHCVVVGGGP-------------------------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE 274 (436)
Q Consensus 220 p~~~~~~~~~~~~vvViG~G~-------------------------~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~ 274 (436)
..++++|||+|. .++|+|..++.... + ...++..+|++++
T Consensus 144 ---------~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~----~--~g~~~~~~v~~~~ 208 (409)
T 3h8l_A 144 ---------FQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK----K--KGMLDKVHVTVFS 208 (409)
T ss_dssp ---------CCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHH----T--TTCTTTEEEEEEC
T ss_pred ---------hcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHH----H--cCCCCCeEEEEEe
Confidence 112677999992 58899988876541 1 1112346999999
Q ss_pred CCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCC-CCCCCcE
Q 013810 275 ANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP-KSPGGRI 352 (436)
Q Consensus 275 ~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~-~~~~G~i 352 (436)
+.+.++.+++.+.+.+.+.+++.||+++++. |++++.++|++++|+++++|+||+++|+.|++++..+++. .+++|+|
T Consensus 209 ~~~~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i 288 (409)
T 3h8l_A 209 PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFI 288 (409)
T ss_dssp SSSSSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCB
T ss_pred CCccccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCE
Confidence 9777788889999999999999999999985 9999999999999999999999999999999888777332 4678999
Q ss_pred EeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 353 ~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.||+++|++++|||||+|||+..+. ++++..|..||+.||+||....
T Consensus 289 ~vd~~~~~~~~~~vfa~GD~~~~~~-------~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 289 PTDLNMVSIKYDNVYAVGDANSMTV-------PKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp CBBTTSBBSSCTTEEECGGGBTTCC-------SCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeCcccccCCCCCEEEeehhccCCC-------CcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999559999999999998532 7899999999999999998654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=328.48 Aligned_cols=295 Identities=24% Similarity=0.342 Sum_probs=232.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhh-hhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLA-STCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
+++|+|||||+||++||..|++.|+ +|+|||+++.+.|. +.+. ....+......+.... .......++.++.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~gv~~~~ 79 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----PDAYAAQNIQLLG 79 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSC----HHHHHHTTEEEEC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccC----HHHHHhCCCEEEe
Confidence 4799999999999999999999998 79999998876654 2222 1222222222211111 1223446788877
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cc---cccccChHHHHHHHHHHHH
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-EN---ATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~---~~~~~~~~~~~~~~~~~~~ 212 (436)
+ +|+.++.+.+.+.+. ++. ++.||+||+|||++|+.|++||.+ .+ ++++.+.+++..+.+.+
T Consensus 80 ~~~v~~i~~~~~~v~~~---~g~--------~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l-- 146 (431)
T 1q1r_A 80 GTQVTAINRDRQQVILS---DGR--------ALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQL-- 146 (431)
T ss_dssp SCCEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHTC--
T ss_pred CCEEEEEECCCCEEEEC---CCC--------EEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHHh--
Confidence 5 789999888777653 565 799999999999999999999975 34 67778888887776543
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYA 290 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~ 290 (436)
..+++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++. +++++.+.+
T Consensus 147 ---------------~~~~~vvViGgG~~g~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (431)
T 1q1r_A 147 ---------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVTLLDTAARVLERVTAPPVSAFY 197 (431)
T ss_dssp ---------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTTSCHHHHHHH
T ss_pred ---------------hcCCeEEEECCCHHHHHHHHHHHhCC--------------CEEEEEEeCCccccchhhHHHHHHH
Confidence 23459999999999999999999876 899999995 45554 889999999
Q ss_pred HHHHHhcCCEEEec-ceEEEeC----C---eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCC
Q 013810 291 TTQLSKSGVRLVRG-IVKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP 361 (436)
Q Consensus 291 ~~~l~~~gV~i~~~-~v~~i~~----~---~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t 361 (436)
.+.+++.||+++.+ .|.+++. + .|.+.+|+++++|.||+|+|++|+ ++++.++++.+ +| |.||+++| |
T Consensus 198 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~~~~-t 274 (431)
T 1q1r_A 198 EHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINEHMQ-T 274 (431)
T ss_dssp HHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCTTSB-C
T ss_pred HHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECCCcc-c
Confidence 99999999999999 4888864 2 477889999999999999999999 68888999886 45 99999999 8
Q ss_pred CCCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 362 SVQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+.|+|||+|||+..+.. .|.+.+..++..|..||+.||.||...
T Consensus 275 s~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~ 319 (431)
T 1q1r_A 275 SDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 319 (431)
T ss_dssp SSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999987542 344334557899999999999999853
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=328.92 Aligned_cols=322 Identities=20% Similarity=0.310 Sum_probs=247.8
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcc-cccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
++||+|||||+||++||..|++. |.+|+|||+++...|.+. ++....+.. ....+ .......+.+..++.++.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~gv~~~~ 112 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKL---IARNVKTFRDKYGIDAKV 112 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGG---BSSCHHHHHHTTCCEEES
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHh---hhcCHHHHHhhcCCEEEe
Confidence 36999999999999999999985 899999999987765432 332222211 12111 111222233445788876
Q ss_pred -eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhcc
Q 013810 138 -SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 138 -~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
.+|+.++.+.+.+.+....+|+ ..++.||+||||||+.|+.|++||.+ .++++..+.+++.++.+.+..
T Consensus 113 ~~~v~~i~~~~~~v~v~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~--- 183 (480)
T 3cgb_A 113 RHEVTKVDTEKKIVYAEHTKTKD------VFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLET--- 183 (480)
T ss_dssp SEEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHS---
T ss_pred CCEEEEEECCCCEEEEEEcCCCc------eEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhh---
Confidence 5889999988888876422342 12589999999999999999999986 567778888888887765420
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL 294 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|.+.+ .+|+++++. .+++.+++++.+.+.+.+
T Consensus 184 ------------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l 237 (480)
T 3cgb_A 184 ------------NKVEDVTIIGGGAIGLEMAETFVELG--------------KKVRMIERNDHIGTIYDGDMAEYIYKEA 237 (480)
T ss_dssp ------------SCCCEEEEECCHHHHHHHHHHHHHTT--------------CEEEEECCGGGTTSSSCHHHHHHHHHHH
T ss_pred ------------cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCchhhcCCHHHHHHHHHHH
Confidence 13459999999999999999999876 899999995 577788999999999999
Q ss_pred HhcCCEEEecc-eEEEeCC-eE--EEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEe
Q 013810 295 SKSGVRLVRGI-VKDVDSQ-KL--ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~-~v--~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~ 369 (436)
++.||+++.+. |.+++.+ ++ ...++.++++|.||+|+|++|+ ++++.++++++++|+|.||+++| |+.|+|||+
T Consensus 238 ~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~-ts~p~IyA~ 316 (480)
T 3cgb_A 238 DKHHIEILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQ-TNVQDVYAA 316 (480)
T ss_dssp HHTTCEEECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSB-CSSTTEEEC
T ss_pred HHcCcEEEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCcc-CCCCCEEEe
Confidence 99999999984 8888653 22 2335568999999999999998 68888999999899999999999 899999999
Q ss_pred ccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHHH
Q 013810 370 GDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSIL 422 (436)
Q Consensus 370 GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~~ 422 (436)
|||+..+.. .|++.++.++..|..||+.||+||.... .+++.+++..+..+++
T Consensus 317 GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~ 378 (480)
T 3cgb_A 317 GDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGL 378 (480)
T ss_dssp GGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEEC
T ss_pred eeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCC
Confidence 999986552 4555556789999999999999997532 2345556666655553
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=326.59 Aligned_cols=308 Identities=19% Similarity=0.214 Sum_probs=239.4
Q ss_pred CCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+++|||||||+||++||..|++ .|++|+|||+++++.|.|.+.....+.....++...+.+ +....++.++.+
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~~~gv~~~~~ 79 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRH----YVERKGIHFIAQ 79 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHH----HHHTTTCEEECS
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHH----HHHHCCCEEEEe
Confidence 4799999999999999999999 899999999999999988877776665555444444333 344578999989
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+|+.++.+.+.+.+. ++. ++.||+||+|||++++.+.+||.++ +.+.+++.+++..+.+.+...
T Consensus 80 ~v~~id~~~~~V~~~---~g~--------~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~-- 146 (437)
T 3sx6_A 80 SAEQIDAEAQNITLA---DGN--------TVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQAL-- 146 (437)
T ss_dssp CEEEEETTTTEEEET---TSC--------EEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHH--
T ss_pred EEEEEEcCCCEEEEC---CCC--------EEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHH--
Confidence 999999998877653 555 7999999999999999999999863 566788888888887765321
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHH------HHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCC-----Cccc
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTG------VEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEIL-----SSFD 283 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g------~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~l-----~~~~ 283 (436)
...++++|||+|+++ +|+|..++....+ . ..+...+ |+++++.+.+ +.+
T Consensus 147 ------------~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~----~--g~~~~~~~Vtlv~~~~~~~~~~l~~~- 207 (437)
T 3sx6_A 147 ------------LREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK----R--GMRDKIPSFTFITSEPYIGHLGIQGV- 207 (437)
T ss_dssp ------------HHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHH----T--TCGGGCSCEEEEESSSSTTCTTTTCC-
T ss_pred ------------HhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHH----c--CCcccCcEEEEEcCCccccccccCcc-
Confidence 011257889986654 9999888765421 1 1112234 9999996532 233
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEcC---------CcEEecceEEEecCCCCchh-cccCCCCCCCCCcE
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILND---------GTEVPYGLLVWSTGVGPSTL-VKSLDLPKSPGGRI 352 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~~---------g~~i~~D~vi~a~G~~p~~~-~~~~~l~~~~~G~i 352 (436)
++..+.+.+.+++.||+++.+. |++++++.+.+++ ++++++|++++++|+.++.+ ....++ .+++|+|
T Consensus 208 ~~~~~~~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i 286 (437)
T 3sx6_A 208 GDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFV 286 (437)
T ss_dssp TTHHHHHHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCB
T ss_pred hHHHHHHHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcE
Confidence 3477888999999999999995 9999998887764 66899999999999998854 434566 6888999
Q ss_pred EeCCCCCCCCCCCEEEeccccccccCCCCc---cCCccHHHHHHHHHHHHhhhhhhc
Q 013810 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKT---VLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 353 ~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~---~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.||+++|++++|||||+|||+..+...+.+ ..|+++..|+.||+.||+||....
T Consensus 287 ~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l 343 (437)
T 3sx6_A 287 LVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADL 343 (437)
T ss_dssp CBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred EeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999955999999999999976543322 247899999999999999997543
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=323.81 Aligned_cols=317 Identities=23% Similarity=0.285 Sum_probs=240.7
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecch-hhhhhcCcc-cccccccchhhcchhhhcCCCcEEEE-
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTL-EFRSVAEPIARIQPAISREPGSYFFL- 137 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (436)
+||||||||+||++||..|++. |.+|+|||+++.+.|.+. +.....+.. ....+.... .......++.++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~gv~~~~~ 76 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMT----GEKMESRGVNVFSN 76 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCC----HHHHHHTTCEEEET
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCC----HHHHHHCCCEEEEC
Confidence 4899999999999999999987 899999999987766542 222222221 122221111 1122335788754
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
.+|+.++.+.+.+.+....+|+ ..++.||+||||||+.|+.|++||.+ +++++.++.+++..+.+.+.
T Consensus 77 ~~v~~i~~~~~~v~~~~~~~g~------~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~----- 145 (447)
T 1nhp_A 77 TEITAIQPKEHQVTVKDLVSGE------ERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTV----- 145 (447)
T ss_dssp EEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHT-----
T ss_pred CEEEEEeCCCCEEEEEecCCCc------eEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhh-----
Confidence 5888999988888876433343 11489999999999999999999986 56777888888877766541
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCC-cccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l 294 (436)
. ..+++++|||+|++|+|+|..|++.+ .+|+++++. .+++ .+++++.+.+.+.+
T Consensus 146 ~----------~~~~~vvIiG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l 201 (447)
T 1nhp_A 146 D----------PEVNNVVVIGSGYIGIEAAEAFAKAG--------------KKVTVIDILDRPLGVYLDKEFTDVLTEEM 201 (447)
T ss_dssp C----------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSTTTTTCCHHHHHHHHHHH
T ss_pred h----------cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCcccccccCCHHHHHHHHHHH
Confidence 0 13359999999999999999999876 899999995 4566 58899999999999
Q ss_pred HhcCCEEEecc-eEEEeCC-e---EEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 295 SKSGVRLVRGI-VKDVDSQ-K---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~~-~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
++.||+++.+. |.+++.+ . +.+ +++++++|.||+|+|++|+ ++++.. ++++++|+|.||+++| |+.|+|||
T Consensus 202 ~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~-t~~~~Iya 278 (447)
T 1nhp_A 202 EANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMR-TSEPDVFA 278 (447)
T ss_dssp HTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCB-CSSTTEEE
T ss_pred HhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECcccc-CCCCCEEE
Confidence 99999999984 8888753 2 444 6678999999999999999 677776 8888889999999999 89999999
Q ss_pred ecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhc--------CCceeeecchhHHHH
Q 013810 369 VGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLA--------RNWCWFFDVCSLTSI 421 (436)
Q Consensus 369 ~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~~~~~~~~~~~~~ 421 (436)
+|||+..+. ..|++..++++..|..||+.||+||.... .+++.+++..+..++
T Consensus 279 ~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG 340 (447)
T 1nhp_A 279 VGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTG 340 (447)
T ss_dssp CGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEE
T ss_pred eeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEec
Confidence 999998644 23444456789999999999999998532 123335555555454
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=312.59 Aligned_cols=290 Identities=19% Similarity=0.308 Sum_probs=228.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
++||+|||||+||++||..|++.| .+|+|||+++...|. +.+.....+......+. ......+....++.++.+
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~ 80 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLA---MAEPGAMAEQLNARILTH 80 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSCCCEECGGGGGGTTTTTCCHHHHE---EECHHHHHHHTTCEEECS
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCCCCccCcccccHHHhCCCCHHHhh---ccCHHHHHHhCCcEEEeC
Confidence 479999999999999999999988 469999998765543 44433332221111111 111122334567888754
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
+|+.++...+.+.+ ++. .+.||+||+|||+.|+.|++||.+ +++++..++.++..+...+
T Consensus 81 ~~v~~i~~~~~~v~~----~~~--------~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~------ 142 (384)
T 2v3a_A 81 TRVTGIDPGHQRIWI----GEE--------EVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAA------ 142 (384)
T ss_dssp CCCCEEEGGGTEEEE----TTE--------EEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHHH------
T ss_pred CEEEEEECCCCEEEE----CCc--------EEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHhh------
Confidence 78899987777765 233 789999999999999999999976 5788889998888777664
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc-ccHHHHHHHHHHH
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQL 294 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~-~~~~~~~~~~~~l 294 (436)
..+++++|||+|++|+|+|..|.+.+ .+|+++++. .+++. +++++.+.+.+.+
T Consensus 143 -----------~~~~~v~ViGgG~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l 197 (384)
T 2v3a_A 143 -----------AGKRRVLLLGAGLIGCEFANDLSSGG--------------YQLDVVAPCEQVMPGLLHPAAAKAVQAGL 197 (384)
T ss_dssp -----------TTCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTTSCHHHHHHHHHHH
T ss_pred -----------ccCCeEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCcchhhcccCHHHHHHHHHHH
Confidence 22459999999999999999999876 899999995 45555 4888999999999
Q ss_pred HhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEE
Q 013810 295 SKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya 368 (436)
++.||+++.+. |.+++. + .+++.+|+++++|.||+|+|.+|+ ++++.++++.+ +| |.||+++| |+.|+|||
T Consensus 198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~~~~-t~~~~IyA 274 (384)
T 2v3a_A 198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDRSLR-TSHANIYA 274 (384)
T ss_dssp HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECTTCB-CSSTTEEE
T ss_pred HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECCCCC-CCCCCEEE
Confidence 99999999994 888864 2 467789999999999999999999 58888999887 57 99999999 99999999
Q ss_pred eccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 369 VGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 369 ~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+|||+..+. . ....+..|..||+.+|+||...
T Consensus 275 ~GD~~~~~~---~--~~~~~~~a~~~g~~~a~~i~g~ 306 (384)
T 2v3a_A 275 LGDCAEVDG---L--NLLYVMPLMACARALAQTLAGN 306 (384)
T ss_dssp CGGGEEETT---B--CCCSHHHHHHHHHHHHHHHTTC
T ss_pred eeeeeeECC---C--CcchHHHHHHHHHHHHHHhcCC
Confidence 999997421 0 1346778999999999999853
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=324.95 Aligned_cols=314 Identities=17% Similarity=0.256 Sum_probs=233.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceec-chhhhhh-cCccc-------c------c-cc-ccchh
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFT-PLLASTC-VGTLE-------F------R-SV-AEPIA 121 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~-~~~~~~~-~~~~~-------~------~-~~-~~~~~ 121 (436)
.+++|||||||+||++||..|++. +.+|+|||+++++.|. |.+...+ .+... + . .+ ..+..
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 457999999999999999999876 8899999999877664 2222211 11100 0 0 00 00000
Q ss_pred hcc--hhhh--cCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCC-----c
Q 013810 122 RIQ--PAIS--REPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-----K 191 (436)
Q Consensus 122 ~~~--~~~~--~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~-----~ 191 (436)
.+. ..+. ...++.++.+ +|+.+|.+.+.+.+. +|. ++.||+||||||++|+.|++++. .
T Consensus 90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~---~g~--------~i~yd~lviATGs~p~~~~~~~~~~~~~~ 158 (493)
T 1m6i_A 90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN---DGS--------QITYEKCLIATGGTPRSLSAIDRAGAEVK 158 (493)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET---TSC--------EEEEEEEEECCCEEECCCHHHHTSCHHHH
T ss_pred hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEEC---CCC--------EEECCEEEECCCCCCCCCCCccccccccc
Confidence 000 0011 2357888886 899999888877653 565 79999999999999988776653 1
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
+.++.+++.+++..+...+ ..+++|+|||+|++|+|+|..|++.+.. .+.+|+
T Consensus 159 ~~v~~~~~~~d~~~l~~~~-----------------~~~~~vvViGgG~iG~E~A~~l~~~~~~----------~g~~V~ 211 (493)
T 1m6i_A 159 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKARA----------LGTEVI 211 (493)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHHH----------HTCEEE
T ss_pred CceEEEcCHHHHHHHHHHh-----------------hcCCeEEEECCCHHHHHHHHHHHhhhhh----------cCCEEE
Confidence 3566678888888777654 2345999999999999999999875410 137899
Q ss_pred EEeCCC-CC-CcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc-hhcccCC
Q 013810 272 LIEANE-IL-SSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLD 343 (436)
Q Consensus 272 lv~~~~-~l-~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~ 343 (436)
++++.+ .+ +.+++++.+.+.+.+++.||+++.+. |++++. + .|++.+|++++||.||+|+|.+|+ .+++.++
T Consensus 212 ~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~g 291 (493)
T 1m6i_A 212 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG 291 (493)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHT
T ss_pred EEecCcccccccCCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcC
Confidence 998853 33 45778899999999999999999994 888853 2 467889999999999999999999 5888889
Q ss_pred CCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccC-CCCccCCccHHHHHHHHHHHHhhhhhh-----cCCceeeecc
Q 013810 344 LPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLES-TGKTVLPALAQVSYEQLHLFQKPSFLL-----ARNWCWFFDV 415 (436)
Q Consensus 344 l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~~-----~~~~~~~~~~ 415 (436)
+++++ +|+|.||+++| | .|+|||+|||+..+.. .|.. ...++..|+.||+.||+||... ..+|||...+
T Consensus 292 l~~~~~~ggi~Vd~~l~-t-~~~IyA~GD~a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~~~~~~~~~~~s~~~ 367 (493)
T 1m6i_A 292 LEIDSDFGGFRVNAELQ-A-RSNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAKPYWHQSMFWSDLG 367 (493)
T ss_dssp CCBCTTTCSEECCTTCE-E-ETTEEECGGGEEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCCCCCCCCCEEEEESS
T ss_pred CccccCCCcEEECCCcc-c-CCCeeEeeeeEeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCCCCcCCcCceeeeec
Confidence 98886 58899999999 6 6999999999987543 2332 3557889999999999999753 3457776544
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=316.26 Aligned_cols=298 Identities=16% Similarity=0.202 Sum_probs=233.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
.+||||||||+||++||.+|++.+ .+|+|||+++++.+.|.+.....+.....++..++..+. ..+++++.++
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~-----~~gv~~i~~~ 76 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLR-----AHGIQVVHDS 76 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHH-----HTTCEEECSC
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHH-----HCCCEEEEeE
Confidence 378999999999999999998755 689999999999999998888887777666655554432 3589999999
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc-----ccccccChHHHHHHHHHHHHhc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-----NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~-----~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
|+.||++.+.+.+. +|. ++.||+||||||++++.+++||.++ .++..+..+++..+++.+...
T Consensus 77 v~~id~~~~~v~~~---~g~--------~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~- 144 (401)
T 3vrd_B 77 ALGIDPDKKLVKTA---GGA--------EFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESM- 144 (401)
T ss_dssp EEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHS-
T ss_pred EEEEEccCcEEEec---ccc--------eeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhc-
Confidence 99999999988764 666 8999999999999999999999753 335567788888888776321
Q ss_pred cccCCCCCChhhhcccCcEEEECC-------ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---CcccH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGG-------GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFDD 284 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~-------G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~~~ 284 (436)
.. ...+|+++ +..+.|++.+++.+.+ +. ....+|++++..+.+ +.+++
T Consensus 145 -------------~~-~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~----~~----~~~~~v~i~~~~~~~~~~~~~~~ 202 (401)
T 3vrd_B 145 -------------DD-GGVVIIAPPAPPFRCPPGPYERASQIAHYLK----AH----KSKSKVIILDNSQTFSKQAQFTK 202 (401)
T ss_dssp -------------CT-TCEEEEECCSSSCBCTTHHHHHHHHHHHHHH----HH----CTTCEEEEECSSSSCTTHHHHHH
T ss_pred -------------cc-CCcEEEecCCccEEeehHHHHHHHHHHHHHH----hc----CCCCEEEEEcccccccccccccH
Confidence 11 13444443 3456677777665431 11 234799999986533 34556
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC----CeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCC-C
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS----QKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEW-L 358 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~-~ 358 (436)
.+.+.+.+.+++.||+++.+. +..++. ..+++++|+++++|++++++|++|+++++..++ .+++|+|.||++ +
T Consensus 203 ~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl 281 (401)
T 3vrd_B 203 GWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTF 281 (401)
T ss_dssp HHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTC
T ss_pred HHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcc
Confidence 666777777888999999984 555542 468899999999999999999999988889898 478899999987 7
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|+|++|||||+|||+... +.|++++.|.+||+.+|+||...
T Consensus 282 ~~t~~p~VfAiGDva~~~------~~pk~a~~A~~qa~v~A~ni~~~ 322 (401)
T 3vrd_B 282 ESSLQPGIHVIGDACNAA------PMPKSAYSANSQAKVAAAAVVAL 322 (401)
T ss_dssp BBSSSTTEEECGGGBCCT------TSCBSHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCEEEecccccCC------CCCchHHHHHHHHHHHHHHHHHH
Confidence 889999999999998642 13789999999999999999754
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=320.99 Aligned_cols=285 Identities=22% Similarity=0.319 Sum_probs=213.9
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcC--------CCcceecchh----hh-----------h-----hcCc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPLL----AS-----------T-----CVGT-- 110 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~--------~~~~~~~~~~----~~-----------~-----~~~~-- 110 (436)
++||+|||||+||++||..|++ .|++|+|||+ +..++..... +. . ..+.
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~ 86 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF 86 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence 5799999999999999999999 9999999992 3332221000 00 0 0000
Q ss_pred ------ccccccccchhhc-------chhhhcCC-CcEEEEeEeEeEeCCCCEEEEEEecC-----CcccCCCCceeeec
Q 013810 111 ------LEFRSVAEPIARI-------QPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTD-----ELRTLEPWKFKISY 171 (436)
Q Consensus 111 ------~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~~~-----g~~~~~~~~~~~~~ 171 (436)
.++..+....... ........ ++.++.+++..++. +.+.+....+ +. .+.|
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~~~~~~--------~~~~ 156 (495)
T 2wpf_A 87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK--NVVVVRETADPKSAVKE--------RLQA 156 (495)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET--TEEEEESSSSTTSCEEE--------EEEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC--CEEEEeecCCccCCCCe--------EEEc
Confidence 0000000000000 01112334 89999998888764 5666642112 33 7999
Q ss_pred cEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHH
Q 013810 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (436)
Q Consensus 172 d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~ 251 (436)
|+||||||++|+.|++||. +.+++. .++. .+...| ++++|||+|.+|+|+|..|++
T Consensus 157 d~lViATGs~p~~p~i~G~-~~~~~~---~~~~----------~~~~~~----------~~vvViGgG~ig~E~A~~l~~ 212 (495)
T 2wpf_A 157 DHILLATGSWPQMPAIPGI-EHCISS---NEAF----------YLPEPP----------RRVLTVGGGFISVEFAGIFNA 212 (495)
T ss_dssp EEEEECCCEEECCCCCTTG-GGCEEH---HHHT----------TCSSCC----------SEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcCCCCCCCc-cccccH---HHHH----------hhhhcC----------CeEEEECCCHHHHHHHHHHHh
Confidence 9999999999999999987 333322 2111 122223 499999999999999999998
Q ss_pred H---HHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCCcE
Q 013810 252 F---IMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTE 321 (436)
Q Consensus 252 ~---~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g~~ 321 (436)
+ + .+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|++.+|++
T Consensus 213 ~~~~g--------------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~ 278 (495)
T 2wpf_A 213 YKPPG--------------GKVTLCYRNNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKT 278 (495)
T ss_dssp HCCTT--------------CEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCE
T ss_pred hCCCC--------------CeEEEEEcCCccccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcE
Confidence 7 5 899999995 67888999999999999999999999994 8888642 477789989
Q ss_pred EecceEEEecCCCCc-h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHH
Q 013810 322 VPYGLLVWSTGVGPS-T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLF 398 (436)
Q Consensus 322 i~~D~vi~a~G~~p~-~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~a 398 (436)
+++|.||+|+|++|+ + + ++.++++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.|
T Consensus 279 i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~~~---------~~l~~~A~~~g~~a 348 (495)
T 2wpf_A 279 LDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSR-TNVPNIYAIGDITDR---------LMLTPVAINEGAAL 348 (495)
T ss_dssp EEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCB-CSSTTEEECGGGGCS---------CCCHHHHHHHHHHH
T ss_pred EEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCc-cCCCCEEEEeccCCC---------ccCHHHHHHHHHHH
Confidence 999999999999999 4 4 678899999899999999999 899999999999975 67899999999999
Q ss_pred Hhhhhh
Q 013810 399 QKPSFL 404 (436)
Q Consensus 399 a~~i~~ 404 (436)
|.||..
T Consensus 349 a~~i~g 354 (495)
T 2wpf_A 349 VDTVFG 354 (495)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 999985
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=328.19 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=227.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh----h-h-------------------cCccc----
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS----T-C-------------------VGTLE---- 112 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~----~-~-------------------~~~~~---- 112 (436)
.++||+|||||+||++||.+|++.|++|+|||+++.++......+ . . .....
T Consensus 42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 121 (523)
T 1mo9_A 42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVG 121 (523)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhhhhh
Confidence 458999999999999999999999999999999874432211000 0 0 00000
Q ss_pred ccccccchhhcch---hhh-----cCCCcEEE-EeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 113 FRSVAEPIARIQP---AIS-----REPGSYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 113 ~~~~~~~~~~~~~---~~~-----~~~~~~~~-~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
...+...+..... .+. ...++.++ .+++..++. +.+.+ ++. .+.||+||||||+.|.
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~----~g~--------~~~~d~lViATGs~p~ 187 (523)
T 1mo9_A 122 IKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEA----AGK--------VFKAKNLILAVGAGPG 187 (523)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEE----TTE--------EEEBSCEEECCCEECC
T ss_pred HHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEE----CCE--------EEEeCEEEECCCCCCC
Confidence 0001111111111 222 55678887 778888875 45544 243 7999999999999999
Q ss_pred CCCCCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhc
Q 013810 184 TFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (436)
Q Consensus 184 ~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~ 262 (436)
.|++||.+. ++++. .++. .. +...| +++++|||+|.+|+|+|..+.+++
T Consensus 188 ~p~i~G~~~~~v~~~---~~~~---~~------l~~~~---------g~~vvViGgG~~g~E~A~~l~~~G--------- 237 (523)
T 1mo9_A 188 TLDVPGVNAKGVFDH---ATLV---EE------LDYEP---------GSTVVVVGGSKTAVEYGCFFNATG--------- 237 (523)
T ss_dssp CCCSTTTTSBTEEEH---HHHH---HH------CCSCC---------CSEEEEECCSHHHHHHHHHHHHTT---------
T ss_pred CCCCCCcccCcEeeH---HHHH---HH------HHhcC---------CCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 999999753 24432 2221 11 22223 149999999999999999999876
Q ss_pred CCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce------EEEcCCc-EEecceEEEec
Q 013810 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK------LILNDGT-EVPYGLLVWST 331 (436)
Q Consensus 263 ~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~------v~~~~g~-~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++. ++ |++.+|+ ++++|.||+|+
T Consensus 238 -----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~ 312 (523)
T 1mo9_A 238 -----RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGL 312 (523)
T ss_dssp -----CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECC
T ss_pred -----CeEEEEEecCcccccccHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECc
Confidence 899999995 57788899999999999999999999994 888864 33 5667887 89999999999
Q ss_pred CCCCc-h-hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc---
Q 013810 332 GVGPS-T-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--- 406 (436)
Q Consensus 332 G~~p~-~-~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--- 406 (436)
|++|+ . +++.+|++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||.||....
T Consensus 313 G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~ 382 (523)
T 1mo9_A 313 GEQPRSAELAKILGLDLGPKGEVLVNEYLQ-TSVPNVYAVGDLIGG---------PMEMFKARKSGCYAARNVMGEKISY 382 (523)
T ss_dssp CCEECCHHHHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECGGGGCS---------SCSHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCccCCccCHHHcCCccCCCCCEEECCCCc-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999 4 7888999999899999999999 899999999999986 6789999999999999998532
Q ss_pred ----CCceeeecchhHHHHHH
Q 013810 407 ----RNWCWFFDVCSLTSILN 423 (436)
Q Consensus 407 ----~~~~~~~~~~~~~~~~~ 423 (436)
.+++++++..+..+|++
T Consensus 383 ~~~~~p~~~~~~~~~a~vG~~ 403 (523)
T 1mo9_A 383 TPKNYPDFLHTHYEVSFLGMG 403 (523)
T ss_dssp CCCSCCEEEESSSEEEEEECC
T ss_pred CCCCCCeEEECCCceEEEeCC
Confidence 35667777766666543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=302.87 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=209.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCA 141 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (436)
++||+|||||+||++||..|++.|++|+|||+++.....+.......+.. ..........+...+....++.++.++|+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~v~ 80 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQD-GKAPGEIIAEARRQIERYPTIHWVEGRVT 80 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCT-TCCHHHHHHHHHHHHTTCTTEEEEESCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCC-CCCHHHHHHHHHHHHHhcCCeEEEEeEEE
Confidence 37999999999999999999999999999998754322111110011100 01111111222222333347888888999
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhccccC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
.++.+.+.+.+.. .++. ++.||+||+|||+.|+.|++||.+. .........+...
T Consensus 81 ~i~~~~~~~~v~~-~~g~--------~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------------- 138 (297)
T 3fbs_A 81 DAKGSFGEFIVEI-DGGR--------RETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYE------------- 138 (297)
T ss_dssp EEEEETTEEEEEE-TTSC--------EEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGG-------------
T ss_pred EEEEcCCeEEEEE-CCCC--------EEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchh-------------
Confidence 9998776665543 3554 7999999999999999999999753 1111111111100
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcC
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~g 298 (436)
..+++|+|||+|++|+|+|..|.+. + +|+++++.+. .+. +.+.+.+++.|
T Consensus 139 ---------~~~~~v~vvG~G~~~~e~a~~l~~~--------------g-~v~~v~~~~~--~~~----~~~~~~l~~~g 188 (297)
T 3fbs_A 139 ---------LDQGKIGVIAASPMAIHHALMLPDW--------------G-ETTFFTNGIV--EPD----ADQHALLAARG 188 (297)
T ss_dssp ---------GTTCEEEEECCSTTHHHHHHHGGGT--------------S-EEEEECTTTC--CCC----HHHHHHHHHTT
T ss_pred ---------hcCCEEEEEecCccHHHHHHHhhhc--------------C-cEEEEECCCC--CCC----HHHHHHHHHCC
Confidence 2235999999999999999998752 3 8999998643 222 34566888899
Q ss_pred CEEEecceEEEeCC-eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCC--CCC-cEEeCCCCCCCCCCCEEEecccc
Q 013810 299 VRLVRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS--PGG-RIGIDEWLRVPSVQDVFAVGDCS 373 (436)
Q Consensus 299 V~i~~~~v~~i~~~-~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~--~~G-~i~vd~~~~~t~~~~Vya~GD~~ 373 (436)
|+++...|.+++.+ .|++.+|+++++|.|++++|++|+ ++++.++++.+ ++| ++.||++++ |+.|+|||+|||+
T Consensus 189 v~i~~~~v~~i~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~-t~~~~vya~GD~~ 267 (297)
T 3fbs_A 189 VRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQ-TTARGIFACGDVA 267 (297)
T ss_dssp CEEECSCEEEEETTEEEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCB-CSSTTEEECSGGG
T ss_pred cEEEcceeeeeecCCeEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCc-cCCCCEEEEeecC
Confidence 99997569999887 899999999999999999999998 68888888876 457 899999999 9999999999999
Q ss_pred ccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 374 GYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 374 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.. ++.+..|+.||+.||.+|....
T Consensus 268 ~~---------~~~~~~A~~~g~~aa~~i~~~l 291 (297)
T 3fbs_A 268 RP---------AGSVALAVGDGAMAGAAAHRSI 291 (297)
T ss_dssp CT---------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred Cc---------hHHHHHHHHhHHHHHHHHHHHH
Confidence 86 7899999999999999998654
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=302.78 Aligned_cols=287 Identities=10% Similarity=0.090 Sum_probs=197.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
|+++||+|||||||||+||++|++.|++|+|||++...... ...++... .+.............+..+...+.+...
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFIT--RDGIKPEEFKEIGLNEVMKYPSVHYYEK 81 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTT--CTTBCHHHHHHHHHHHHTTSTTEEEEEC
T ss_pred CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccC--CCCCCHHHHHHHHHHHHHhcCCEEEEee
Confidence 45689999999999999999999999999999987431110 00001100 0000000111112223344456777777
Q ss_pred EeEeEeCC-CCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhcccc
Q 013810 139 HCAGIDTD-NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 139 ~v~~id~~-~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
.+..++.. ...+.+. ..++. ++.||+||||||++|+.|++||.+.. ....+.........
T Consensus 82 ~~~~~~~~~~~~~~v~-~~~g~--------~~~a~~liiATGs~p~~p~i~G~~~~--~~~~v~~~~~~~~~-------- 142 (304)
T 4fk1_A 82 TVVMITKQSTGLFEIV-TKDHT--------KYLAERVLLATGMQEEFPSIPNVREY--YGKSLFSCPYCDGW-------- 142 (304)
T ss_dssp CEEEEEECTTSCEEEE-ETTCC--------EEEEEEEEECCCCEEECCSCTTHHHH--BTTTEESCHHHHSG--------
T ss_pred EEEEeeecCCCcEEEE-ECCCC--------EEEeCEEEEccCCccccccccCcccc--ccceeeeccccchh--------
Confidence 77766543 3333333 23565 89999999999999999999997521 11111111111100
Q ss_pred CCCCCChhhhcccCcEEEECCChH-HHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPT-GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~-g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
..+.++++|||+|.. ++|+|..+..++ .+|+++.+++.+. +.+.+.|++
T Consensus 143 ---------~~~~~~~~VIggG~~~~~e~a~~~~~~~--------------~~v~i~~~~~~~~-------~~~~~~l~~ 192 (304)
T 4fk1_A 143 ---------ELKDQPLIIISENEDHTLHMTKLVYNWS--------------TDLVIATNGNELS-------QTIMDELSN 192 (304)
T ss_dssp ---------GGTTSCEEEECCSHHHHHHHHHHHTTTC--------------SCEEEECSSCCCC-------HHHHHHHHT
T ss_pred ---------HhcCCceeeecCCCchhhhHHHHHHhCC--------------ceEEEEeccccch-------hhhhhhhhc
Confidence 022347888888865 567777776554 8899998864332 335567888
Q ss_pred cCCEEEecceEEEeC-----CeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEec
Q 013810 297 SGVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (436)
Q Consensus 297 ~gV~i~~~~v~~i~~-----~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~G 370 (436)
.|++++.+.+..+.. ..|++++|+++++|.+++++|.+|+ +++.+++++++++|+|.||+++| |+.|||||+|
T Consensus 193 ~g~~~~~~~v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~-Ts~p~IyA~G 271 (304)
T 4fk1_A 193 KNIPVITESIRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR-TSEKNIYLAG 271 (304)
T ss_dssp TTCCEECSCEEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCB-CSSTTEEECS
T ss_pred cceeEeeeeEEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCc-cCCCCEEEEe
Confidence 999999888777764 3588899999999988887776555 78899999999999999999999 9999999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||++.+ ++++..|+.||+.||.+|..+.
T Consensus 272 Dv~~~~--------~~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 272 ETTTQG--------PSSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp HHHHTS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCc--------chHHHHHHHHHHHHHHHHHHHH
Confidence 999742 5678999999999999997654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=321.95 Aligned_cols=303 Identities=18% Similarity=0.193 Sum_probs=222.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------------h-hcCcc------cc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------------T-CVGTL------EF 113 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------------~-~~~~~------~~ 113 (436)
++||+|||||+||++||..|++.|++|+|||+++.++......+ . ..|.. +.
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVRLNL 85 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCccCH
Confidence 47999999999999999999999999999999875432210000 0 00110 00
Q ss_pred ccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecC-CcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD-ELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~-g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..+.. .+...........++.++.+++..++. +.+.+.. .+ +. .++.||+||+|||++|..|
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~-~~gg~-------~~~~~d~lViAtGs~p~~p 155 (474)
T 1zmd_A 86 DKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGK--NQVTATK-ADGGT-------QVIDTKNILIATGSEVTPF 155 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEET--TEEEEEC-TTSCE-------EEEEEEEEEECCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEe-cCCCc-------EEEEeCEEEECCCCCCCCC
Confidence 00000 000001222345688998888777764 4455443 23 21 1799999999999999999
Q ss_pred CCCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 186 GIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 186 ~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
+++|.+. .+++ ..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 156 ~i~g~~~~~v~t---~~~~~~----------~~~~~----------~~vvViGgG~~g~E~A~~l~~~g----------- 201 (474)
T 1zmd_A 156 PGITIDEDTIVS---STGALS----------LKKVP----------EKMVVIGAGVIGVELGSVWQRLG----------- 201 (474)
T ss_dssp TTCCCCSSSEEC---HHHHTT----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCcCcEEc---HHHHhh----------ccccC----------ceEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9998753 2332 222211 22223 49999999999999999999876
Q ss_pred CCccEEEEEeCC-CCCC-cccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e-EEE-------cCCcEEecceEEEec
Q 013810 265 KDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K-LIL-------NDGTEVPYGLLVWST 331 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~-v~~-------~~g~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++ .+++++.+.+.+.+++.||+++.+. |.+++.+ + +.+ .+++++++|.||+|+
T Consensus 202 ---~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~ 278 (474)
T 1zmd_A 202 ---ADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCI 278 (474)
T ss_dssp ---CEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECS
T ss_pred ---CEEEEEeccCccCCcccCHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECc
Confidence 899999995 5777 8999999999999999999999994 8888642 2 433 356789999999999
Q ss_pred CCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--
Q 013810 332 GVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-- 406 (436)
Q Consensus 332 G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-- 406 (436)
|++|+ ++ ++.++++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||+||....
T Consensus 279 G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~ 348 (474)
T 1zmd_A 279 GRRPFTKNLGLEELGIELDPRGRIPVNTRFQ-TKIPNIYAIGDVVAG---------PMLAHKAEDEGIICVEGMAGGAVH 348 (474)
T ss_dssp CEEECCTTSSHHHHTCCCCTTSCCCCCTTCB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCcCCCcCCchhcCCccCCCCCEEECcCCc-cCCCCEEEeeecCCC---------CccHHHHHHHHHHHHHHhcCCCCc
Confidence 99999 45 677899999899999999999 999999999999986 6789999999999999998532
Q ss_pred -----CCceeeecchhHHHH
Q 013810 407 -----RNWCWFFDVCSLTSI 421 (436)
Q Consensus 407 -----~~~~~~~~~~~~~~~ 421 (436)
.+++++++..+..+|
T Consensus 349 ~~~~~~p~~~~~~~~~a~vG 368 (474)
T 1zmd_A 349 IDYNCVPSVIYTHPEVAWVG 368 (474)
T ss_dssp CCGGGCCEEECSSSEEEEEE
T ss_pred CCCCCCCEEEECCCCeEEEe
Confidence 346666666555444
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=301.93 Aligned_cols=287 Identities=20% Similarity=0.261 Sum_probs=208.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccc-cccchhhcchhhhcCCCcEEEEeEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRS-VAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
++||+|||||+||++||..|++.|++|+|||++ ..............+.... ....+.+.........++.++..+|
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 92 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLDIV 92 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEESCE
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 479999999999999999999999999999997 2111110000000000000 0112222222334456777777999
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhcccc
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|++||.+. ..++.....+. .
T Consensus 93 ~~i~~~~~~~~v~~-~~g~--------~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~-----~-------- 150 (323)
T 3f8d_A 93 EKIENRGDEFVVKT-KRKG--------EFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADA-----P-------- 150 (323)
T ss_dssp EEEEEC--CEEEEE-SSSC--------EEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHG-----G--------
T ss_pred EEEEecCCEEEEEE-CCCC--------EEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCH-----h--------
Confidence 99998876666543 3444 8999999999999999999999753 22222211111 0
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhc
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKS 297 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~ 297 (436)
....++++|||+|++|+|+|..|.+.+ .+|+++++.+.+.. ++. .+.+.+++.
T Consensus 151 ---------~~~~~~v~vvG~G~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~-~~~---~~~~~~~~~ 203 (323)
T 3f8d_A 151 ---------LFKNRVVAVIGGGDSALEGAEILSSYS--------------TKVYLIHRRDTFKA-QPI---YVETVKKKP 203 (323)
T ss_dssp ---------GGTTCEEEEECCSHHHHHHHHHHHHHS--------------SEEEEECSSSSCCS-CHH---HHHHHHTCT
T ss_pred ---------HcCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEeCCCCCc-CHH---HHHHHHhCC
Confidence 022358999999999999999999876 89999999653332 222 233344455
Q ss_pred CCEEEecc-eEEEeCC----eEEEcC---Cc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCE
Q 013810 298 GVRLVRGI-VKDVDSQ----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (436)
Q Consensus 298 gV~i~~~~-v~~i~~~----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~V 366 (436)
||+++.+. +.+++.+ .|++.+ |+ ++++|.|++++|++|+ ++++.++++++++|+|.||++++ |+.|+|
T Consensus 204 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~-t~~~~v 282 (323)
T 3f8d_A 204 NVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMR-TSVPGV 282 (323)
T ss_dssp TEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCB-CSSTTE
T ss_pred CcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCce-ecCCCE
Confidence 99999995 8888764 477765 76 7999999999999999 78999999999999999999999 899999
Q ss_pred EEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 367 FAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 367 ya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+|||+..+ ..++.+..|+.||+.||.+|....
T Consensus 283 ya~GD~~~~~------~~~~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 283 FAAGDCTSAW------LGFRQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp EECSTTBSTT------TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcceecCCC------CcccceeehhhHHHHHHHHHHHHH
Confidence 9999999852 126899999999999999998754
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=322.84 Aligned_cols=309 Identities=17% Similarity=0.206 Sum_probs=220.4
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchhhh---------------h-----hcCc-
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLAS---------------T-----CVGT- 110 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~~~---------------~-----~~~~- 110 (436)
+.++||+||||||||++||..|++.|++|+|||+++ .++......+ . ..|.
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~ 109 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK 109 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 346899999999999999999999999999999854 2211100000 0 0000
Q ss_pred ------ccccccccchhh-------cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 111 ------LEFRSVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 111 ------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
.++..+...... ......+..++.++.+.+..++.. .+.+.. .+|+ ++++.||+||||
T Consensus 110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~--~v~v~~-~~g~------~~~i~~d~lViA 180 (519)
T 3qfa_A 110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPH--RIKATN-NKGK------EKIYSAERFLIA 180 (519)
T ss_dssp CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEEC-TTCC------CCEEEEEEEEEC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEEc-CCCC------EEEEECCEEEEE
Confidence 001000000010 011123346888998888888765 444432 2332 127899999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|+.|++||.+..+++. .++ +.+...|+ +++|||+|++|+|+|..|++++
T Consensus 181 TGs~p~~p~i~G~~~~~~t~---~~~----------~~l~~~~~----------~vvVIGgG~ig~E~A~~l~~~G---- 233 (519)
T 3qfa_A 181 TGERPRYLGIPGDKEYCISS---DDL----------FSLPYCPG----------KTLVVGASYVALECAGFLAGIG---- 233 (519)
T ss_dssp CCEEECCCCCTTHHHHCBCH---HHH----------TTCSSCCC----------SEEEECCSHHHHHHHHHHHHTT----
T ss_pred CCCCcCCCCCCCccCceEcH---HHH----------hhhhhcCC----------eEEEECCcHHHHHHHHHHHHcC----
Confidence 99999999999965433322 111 12233343 8999999999999999999877
Q ss_pred HhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE---eC---CeEEE----cCCc---EEe
Q 013810 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV---DS---QKLIL----NDGT---EVP 323 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i---~~---~~v~~----~~g~---~i~ 323 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +.++ ++ +.+.+ .+|. +++
T Consensus 234 ----------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~ 303 (519)
T 3qfa_A 234 ----------LDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGE 303 (519)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEE
T ss_pred ----------CeEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEE
Confidence 89999999888899999999999999999999999983 4444 32 23322 3552 578
Q ss_pred cceEEEecCCCCc-hh--cccCCCCCC-CCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHH
Q 013810 324 YGLLVWSTGVGPS-TL--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQ 399 (436)
Q Consensus 324 ~D~vi~a~G~~p~-~~--~~~~~l~~~-~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa 399 (436)
+|.|++|+|++|+ ++ ++..+++++ ++|+|.||+++| |+.|+|||+|||+.. .++++..|..||+.||
T Consensus 304 ~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~~-Ts~~~IyA~GD~~~g--------~~~~~~~A~~~g~~aa 374 (519)
T 3qfa_A 304 YNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIYAIGDILED--------KVELTPVAIQAGRLLA 374 (519)
T ss_dssp ESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTSB-CSSTTEEECGGGBSS--------SCCCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCCc-cCCCCEEEEEeccCC--------CCccHHHHHHHHHHHH
Confidence 9999999999999 44 678889988 689999999999 899999999999942 1789999999999999
Q ss_pred hhhhhhc--------CCceeeecchhHHHHHH
Q 013810 400 KPSFLLA--------RNWCWFFDVCSLTSILN 423 (436)
Q Consensus 400 ~~i~~~~--------~~~~~~~~~~~~~~~~~ 423 (436)
+||+... .+++.+++..+..++++
T Consensus 375 ~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlt 406 (519)
T 3qfa_A 375 QRLYAGSTVKCDYENVPTTVFTPLEYGACGLS 406 (519)
T ss_dssp HHHHSCCCCCCCCTTCCEEECSSSCEEEEECC
T ss_pred HHHcCCCCccCCCCcCcEEEECCCceEEecCC
Confidence 9998432 34566666666555533
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=314.93 Aligned_cols=286 Identities=18% Similarity=0.253 Sum_probs=213.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch----hh-----------hhhc-----Cc----------
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------STCV-----GT---------- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~----~~-----------~~~~-----~~---------- 110 (436)
.++||+|||||+||++||..|++.|++|+|||++. ++.... .+ .... +.
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 88 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-LGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEH 88 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSGGG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC-cCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccccc
Confidence 35799999999999999999999999999999974 211100 00 0000 00
Q ss_pred --cccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC
Q 013810 111 --LEFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (436)
Q Consensus 111 --~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~ 181 (436)
.++..+.. .+...........++.++.+++..++.. .+.+.. .+|. ..++.||+||||||+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~ 159 (479)
T 2hqm_A 89 LTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDG--NVEVQK-RDNT------TEVYSANHILVATGGK 159 (479)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTS--CEEEEE-SSSC------CEEEEEEEEEECCCEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCC--EEEEEe-CCCc------EEEEEeCEEEEcCCCC
Confidence 00000000 0000011122346889988888777644 344432 2332 1268999999999999
Q ss_pred CCCC-CCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 013810 182 ASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (436)
Q Consensus 182 ~~~~-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~ 260 (436)
|..| ++||.+ .+++ ..+... +...| ++++|||+|++|+|+|..|++++
T Consensus 160 p~~p~~i~g~~-~~~~---~~~~~~----------l~~~~----------~~vvViGgG~ig~E~A~~l~~~g------- 208 (479)
T 2hqm_A 160 AIFPENIPGFE-LGTD---SDGFFR----------LEEQP----------KKVVVVGAGYIGIELAGVFHGLG------- 208 (479)
T ss_dssp ECCCTTSTTGG-GSBC---HHHHHH----------CSSCC----------SEEEEECSSHHHHHHHHHHHHTT-------
T ss_pred CCCCCCCCCcc-cccc---hHHHhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC-------
Confidence 9999 899873 2222 222211 12223 49999999999999999999876
Q ss_pred hcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC------eEEEcCC-cEEecceEEEec
Q 013810 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ------KLILNDG-TEVPYGLLVWST 331 (436)
Q Consensus 261 ~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~------~v~~~~g-~~i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|.+++| +++++|.||+|+
T Consensus 209 -------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~ 281 (479)
T 2hqm_A 209 -------SETHLVIRGETVLRKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTI 281 (479)
T ss_dssp -------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECS
T ss_pred -------CceEEEEeCCccccccCHHHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECC
Confidence 899999995 57888999999999999999999999994 8888642 4677888 789999999999
Q ss_pred CCCCch-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 332 GVGPST-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 332 G~~p~~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|++|+. + ++..|++++++|+|.||+++| |+.|+|||+|||++. +.++..|.+||+.||+||..
T Consensus 282 G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 346 (479)
T 2hqm_A 282 GRKSHLGMGSENVGIKLNSHDQIIADEYQN-TNVPNIYSLGDVVGK---------VELTPVAIAAGRKLSNRLFG 346 (479)
T ss_dssp CEEECCCSSGGGGTCCBCTTSCBCCCTTCB-CSSTTEEECGGGTTS---------SCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCccccChhhcCceECCCCCEeECCCCc-cCCCCEEEEEecCCC---------cccHHHHHHHHHHHHHHhcC
Confidence 999994 6 688899999999999999999 999999999999875 67899999999999999985
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=315.52 Aligned_cols=308 Identities=20% Similarity=0.264 Sum_probs=222.3
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcC--------CCcceecchhhhh---------------h-----cCc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSP--------RNHMVFTPLLAST---------------C-----VGT-- 110 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~--------~~~~~~~~~~~~~---------------~-----~~~-- 110 (436)
++||+|||||+||++||.+|++ .|++|+|||+ +..++......+. . .+.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~ 82 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL 82 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence 4799999999999999999999 9999999992 3333221100000 0 000
Q ss_pred ------cccccccc-------chhhcchhhhcCC-CcEEEEeEeEeEeCCCCEEEEEEe--cCCcccCCCCceeeeccEE
Q 013810 111 ------LEFRSVAE-------PIARIQPAISREP-GSYFFLSHCAGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKL 174 (436)
Q Consensus 111 ------~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~--~~g~~~~~~~~~~~~~d~l 174 (436)
.++..+.. .+........... ++.++.++++.++. +.+.+... .++.. ...+.||+|
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~g~~-----~~~~~~d~l 155 (490)
T 1fec_A 83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN--HTVLVRESADPNSAV-----LETLDTEYI 155 (490)
T ss_dssp CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET--TEEEEESSSSTTSCE-----EEEEEEEEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC--CEEEEEeeccCCCCc-----eEEEEcCEE
Confidence 00000000 0000111122345 89999998888875 45655421 13300 017999999
Q ss_pred EEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH
Q 013810 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (436)
Q Consensus 175 ViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~ 254 (436)
|||||++|..|++||. +.++ +..++. .+...| ++++|||+|++|+|+|..|.++.
T Consensus 156 viAtGs~p~~p~i~g~-~~~~---~~~~~~----------~~~~~~----------~~vvViGgG~ig~E~A~~l~~~~- 210 (490)
T 1fec_A 156 LLATGSWPQHLGIEGD-DLCI---TSNEAF----------YLDEAP----------KRALCVGGGYISIEFAGIFNAYK- 210 (490)
T ss_dssp EECCCEEECCCCSBTG-GGCB---CHHHHT----------TCSSCC----------SEEEEECSSHHHHHHHHHHHHHS-
T ss_pred EEeCCCCCCCCCCCCc-ccee---cHHHHh----------hhhhcC----------CeEEEECCCHHHHHHHHHHHhhc-
Confidence 9999999999999987 3322 222211 122223 49999999999999999999871
Q ss_pred HHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCCcEEecceE
Q 013810 255 RDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLL 327 (436)
Q Consensus 255 ~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g~~i~~D~v 327 (436)
.++.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|++.+|+++++|.|
T Consensus 211 ----------~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~v 280 (490)
T 1fec_A 211 ----------ARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVV 280 (490)
T ss_dssp ----------CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred ----------cCcCeEEEEEcCCCcccccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEE
Confidence 012899999995 57888999999999999999999999994 8888642 467788989999999
Q ss_pred EEecCCCCc-h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 328 VWSTGVGPS-T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 328 i~a~G~~p~-~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|+|+|++|+ + + ++.+|++++++|+|.||+++| |+.|+|||+|||++. ++++..|.+||+.||.||..
T Consensus 281 v~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~-t~~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 281 MLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSK-TNVDNIYAIGDVTDR---------VMLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp EECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCB-CSSTTEEECGGGGCS---------CCCHHHHHHHHHHHHHHHHS
T ss_pred EEccCCCcCccccCchhcCccCCCCCCEEECCCCc-cCCCCEEEEeccCCC---------ccCHHHHHHHHHHHHHHhcC
Confidence 999999999 4 4 688899999899999999999 899999999999975 67999999999999999985
Q ss_pred hc--------CCceeeecchhHHHH
Q 013810 405 LA--------RNWCWFFDVCSLTSI 421 (436)
Q Consensus 405 ~~--------~~~~~~~~~~~~~~~ 421 (436)
.. .+++.+++..+..++
T Consensus 351 ~~~~~~~~~~~p~~~~~~~~~a~vG 375 (490)
T 1fec_A 351 NKPRATDHTKVACAVFSIPPMGVCG 375 (490)
T ss_dssp SCCCCCCCSSCCEEECCSSCEEEEE
T ss_pred CCCCcCCCCCccEEEECCCCeEEEe
Confidence 32 234445555555444
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=321.90 Aligned_cols=306 Identities=20% Similarity=0.241 Sum_probs=226.5
Q ss_pred CCcEEEECCchHHHHHHHhcccC---CCeEEEEcCCCcceecchh----hh---------------h-hcCcc-------
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFTPLL----AS---------------T-CVGTL------- 111 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~~~~~~~~~----~~---------------~-~~~~~------- 111 (436)
++||+|||||+||++||.+|++. |++|+|||+++ ++..... +. . ..+..
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAK 80 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------C
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCc
Confidence 37999999999999999999998 99999999986 3221000 00 0 00110
Q ss_pred -ccccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCC----CCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 112 -EFRSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTD----NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 112 -~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~----~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+...+.. .+......+....++.++.+++..++.. .+.+.+.. .+++ +..+.||+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~-~~g~------~~~~~~d~lviATG 153 (499)
T 1xdi_A 81 ISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATA-ADGS------TSEHEADVVLVATG 153 (499)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEEC-TTSC------EEEEEESEEEECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEe-CCCc------EEEEEeCEEEEcCC
Confidence 0000000 0111112233456899998888878762 24555542 2332 12689999999999
Q ss_pred CCCCCCCCCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHH
Q 013810 180 AEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (436)
Q Consensus 180 ~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~ 258 (436)
+.|..|++||.+. .+++..+..+ +...| ++++|||+|++|+|+|..+.+++
T Consensus 154 s~p~~p~i~g~~~~~v~~~~~~~~-------------~~~~~----------~~vvViGgG~ig~E~A~~l~~~g----- 205 (499)
T 1xdi_A 154 ASPRILPSAQPDGERILTWRQLYD-------------LDALP----------DHLIVVGSGVTGAEFVDAYTELG----- 205 (499)
T ss_dssp EEECCCGGGCCCSSSEEEGGGGGG-------------CSSCC----------SSEEEESCSHHHHHHHHHHHHTT-----
T ss_pred CCCCCCCCCCCCcCcEEehhHhhh-------------hhccC----------CeEEEECCCHHHHHHHHHHHHcC-----
Confidence 9999999998753 3444333211 12222 49999999999999999999876
Q ss_pred hhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecC
Q 013810 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 259 ~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G 332 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++.+ .+++.+|+++++|.||+|+|
T Consensus 206 ---------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G 276 (499)
T 1xdi_A 206 ---------VPVTVVASQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIG 276 (499)
T ss_dssp ---------CCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCC
T ss_pred ---------CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCC
Confidence 899999995 67788999999999999999999999994 8888643 24557888999999999999
Q ss_pred CCCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh----
Q 013810 333 VGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL---- 405 (436)
Q Consensus 333 ~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~---- 405 (436)
++|+ ++ ++.+|++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||+||...
T Consensus 277 ~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~g~~~~~ 346 (499)
T 1xdi_A 277 SVPNTSGLGLERVGIQLGRGNYLTVDRVSR-TLATGIYAAGDCTGL---------LPLASVAAMQGRIAMYHALGEGVSP 346 (499)
T ss_dssp EEECCSSSCTTTTTCCCBTTTBCCCCSSSB-CSSTTEEECSGGGTS---------CSCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCcCCCcCCchhcCceECCCCCEEECCCcc-cCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHhcCCCCcc
Confidence 9999 46 678899999889999999999 899999999999986 678999999999999999864
Q ss_pred ----cCCceeeecchhHHHHH
Q 013810 406 ----ARNWCWFFDVCSLTSIL 422 (436)
Q Consensus 406 ----~~~~~~~~~~~~~~~~~ 422 (436)
..+++++++..+..+|+
T Consensus 347 ~~~~~~p~~~~~~~~~a~vG~ 367 (499)
T 1xdi_A 347 IRLRTVAATVFTRPEIAAVGV 367 (499)
T ss_dssp CCGGGCEEEECSSSEEEEEES
T ss_pred CCCCCCcEEEEecCCceEeCC
Confidence 13466666666655553
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=313.72 Aligned_cols=280 Identities=20% Similarity=0.285 Sum_probs=212.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhhc------Cc------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STCV------GT------LEFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~~------~~------~~~~ 114 (436)
++||+|||||+||++||..|++.|++|+|||++.. +..... + .... +. .++.
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE 82 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCCC-CCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 47999999999999999999999999999999742 211000 0 0000 00 0000
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+.. .+...........++.++.+++..++. +.+.+ ++. ++.||+||||||+.|..|++
T Consensus 83 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~----~g~--------~~~~d~lviAtGs~p~~p~i 148 (450)
T 1ges_A 83 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV----NGE--------TITADHILIATGGRPSHPDI 148 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE----TTE--------EEEEEEEEECCCEEECCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE----CCE--------EEEeCEEEECCCCCCCCCCC
Confidence 0000 000000111234678999888877774 45544 444 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||. +.++ +..+... +...| ++++|||+|++|+|+|..|++++
T Consensus 149 ~g~-~~~~---~~~~~~~----------~~~~~----------~~vvViGgG~~g~e~A~~l~~~g-------------- 190 (450)
T 1ges_A 149 PGV-EYGI---DSDGFFA----------LPALP----------ERVAVVGAGYIGVELGGVINGLG-------------- 190 (450)
T ss_dssp TTG-GGSB---CHHHHHH----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCc-ccee---cHHHhhh----------hhhcC----------CeEEEECCCHHHHHHHHHHHhcC--------------
Confidence 987 3322 2222221 12223 49999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCCcEEecceEEEecCCCCc-h-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPS-T-L 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g~~i~~D~vi~a~G~~p~-~-~ 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|++.+|+++++|.||+|+|++|+ + +
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l 270 (450)
T 1ges_A 191 AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNI 270 (450)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTS
T ss_pred CEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCC
Confidence 899999995 57788999999999999999999999994 8888642 477789989999999999999999 4 3
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++.+|++++++|+|.||+++| |+.|+|||+|||++. +.++..|.+||+.||.||..
T Consensus 271 ~~~~~gl~~~~~g~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 327 (450)
T 1ges_A 271 NLEAAGVKTNEKGYIVVDKYQN-TNIEGIYAVGDNTGA---------VELTPVAVAAGRRLSERLFN 327 (450)
T ss_dssp CHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECSGGGTS---------CCCHHHHHHHHHHHHHHHHT
T ss_pred CchhcCceECCCCCEeECCCCc-cCCCCEEEEeccCCC---------CccHHHHHHHHHHHHHHHcC
Confidence 577899999999999999999 999999999999975 67899999999999999975
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=318.40 Aligned_cols=303 Identities=21% Similarity=0.243 Sum_probs=223.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhh---------------hhh-----cCc------ccc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---------------STC-----VGT------LEF 113 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~---------------~~~-----~~~------~~~ 113 (436)
+.++||+|||||+||++||..|++.|++|+|||++.. +...... ... .+. .++
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~~-GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL-GGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW 96 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCC-CCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 3458999999999999999999999999999997642 1110000 000 000 000
Q ss_pred cccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC-
Q 013810 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF- 185 (436)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~- 185 (436)
..+. ..+...........++.++.+++..++.....+.. ++. ++.||+||||||+.|+.|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~----~g~--------~~~~d~lviAtG~~p~~p~ 164 (478)
T 3dk9_A 97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV----SGK--------KYTAPHILIATGGMPSTPH 164 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEE----TTE--------EEECSCEEECCCEEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEE----CCE--------EEEeeEEEEccCCCCCCCC
Confidence 0000 01111111223346788988888777766555542 454 799999999999999999
Q ss_pred --CCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 186 --GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 186 --~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
++||.+ ..+ +..+. +.+...| ++++|||+|++|+|+|..|++++
T Consensus 165 ~~~i~G~~-~~~---~~~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g---------- 210 (478)
T 3dk9_A 165 ESQIPGAS-LGI---TSDGF----------FQLEELP----------GRSVIVGAGYIAVEMAGILSALG---------- 210 (478)
T ss_dssp TTTSTTGG-GSB---CHHHH----------TTCCSCC----------SEEEEECCSHHHHHHHHHHHHTT----------
T ss_pred cCCCCCCc-eeE---chHHh----------hchhhcC----------ccEEEECCCHHHHHHHHHHHHcC----------
Confidence 899874 222 21111 1223333 49999999999999999999877
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce----EEEcC---C----cEEecceEE
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK----LILND---G----TEVPYGLLV 328 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~----v~~~~---g----~~i~~D~vi 328 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. +.+++. ++ +.+.+ | +++++|.|+
T Consensus 211 ----~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi 286 (478)
T 3dk9_A 211 ----SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLL 286 (478)
T ss_dssp ----CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEE
T ss_pred ----CeEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEE
Confidence 899999994 67899999999999999999999999984 888863 22 45554 2 579999999
Q ss_pred EecCCCCch--h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 329 WSTGVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 329 ~a~G~~p~~--~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+|+|++|+. + ++.+|++++++|+|.||+++| |+.|+|||+|||++. +++++.|..||+.||+||+..
T Consensus 287 ~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQN-TNVKGIYAVGDVCGK---------ALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp ECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCB-CSSTTEEECGGGGCS---------SCCHHHHHHHHHHHHHHHHSC
T ss_pred EeeccccCCCCCCchhcCCeeCCCCCEeeCCCcc-cCCCCEEEEEecCCC---------CccHhHHHHHHHHHHHHHcCC
Confidence 999999993 4 778899999999999999999 899999999999975 789999999999999999854
Q ss_pred ---------cCCceeeecchhHHHHHH
Q 013810 406 ---------ARNWCWFFDVCSLTSILN 423 (436)
Q Consensus 406 ---------~~~~~~~~~~~~~~~~~~ 423 (436)
..+++.+.+..+..++++
T Consensus 357 ~~~~~~~~~~~p~~~~~~p~~a~vGlt 383 (478)
T 3dk9_A 357 KEDSKLDYNNIPTVVFSHPPIGTVGLT 383 (478)
T ss_dssp CTTCCCCCTTCCEEECCSSCEEEEECC
T ss_pred CCcccCCCCCCCeEEECCCceEEeeCC
Confidence 134555566656555543
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=314.97 Aligned_cols=304 Identities=18% Similarity=0.200 Sum_probs=220.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------------hcCcc-------cc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------------CVGTL-------EF 113 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------------~~~~~-------~~ 113 (436)
++||+|||||+||++||..|++.|++|+|||+++.++......+. ..|.. ++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDS 81 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 479999999999999999999999999999998765332110000 00100 00
Q ss_pred ccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+.. .+...........++.++.+.+..++. +.+.+.. .+|. ...+.||+||+|||+.|+.|+
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~--~~~~v~~-~~G~------~~~~~~d~lviAtG~~p~~p~ 152 (468)
T 2qae_A 82 AKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA--HSIRVNG-LDGK------QEMLETKKTIIATGSEPTELP 152 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEET--TEEEEEE-TTSC------EEEEEEEEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEEe-cCCc------eEEEEcCEEEECCCCCcCCCC
Confidence 00000 000001122334578888887777765 3454432 2441 117899999999999999999
Q ss_pred CCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++|.+. .++ +..++.. +...| ++++|||+|++|+|+|..|.+++
T Consensus 153 ~~g~~~~~v~---t~~~~~~----------~~~~~----------~~vvViGgG~~g~E~A~~l~~~g------------ 197 (468)
T 2qae_A 153 FLPFDEKVVL---SSTGALA----------LPRVP----------KTMVVIGGGVIGLELGSVWARLG------------ 197 (468)
T ss_dssp TBCCCSSSEE---CHHHHHT----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CCCCCcCcee---chHHHhh----------cccCC----------ceEEEECCCHHHHHHHHHHHHhC------------
Confidence 988753 333 2233221 12223 49999999999999999999876
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHH-HhcCCEEEec-ceEEEeCC----eEEEc--CC--cEEecceEEEecCCC
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQ----KLILN--DG--TEVPYGLLVWSTGVG 334 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~i~~~-~v~~i~~~----~v~~~--~g--~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.+ ++.||+++.+ +|.+++.+ .+.+. +| +++++|.||+|+|++
T Consensus 198 --~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~ 275 (468)
T 2qae_A 198 --AEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRR 275 (468)
T ss_dssp --CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEE
T ss_pred --CEEEEEecCCcccccCCHHHHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 899999995 678889999999999999 9999999998 48888642 24444 66 679999999999999
Q ss_pred Cc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc-cccCCCCccCCccHHHHHHHHHHHHhhhhhhc----
Q 013810 335 PS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG-YLESTGKTVLPALAQVSYEQLHLFQKPSFLLA---- 406 (436)
Q Consensus 335 p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~-~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~---- 406 (436)
|+ ++ ++.++++++++|+|.||+++| |+.|+|||+|||+. . +++++.|..||+.||.||....
T Consensus 276 p~~~~l~l~~~gl~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~ 345 (468)
T 2qae_A 276 PFTGGLGLDKINVAKNERGFVKIGDHFE-TSIPDVYAIGDVVDKG---------PMLAHKAEDEGVACAEILAGKPGHVN 345 (468)
T ss_dssp ECCTTSCHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECGGGBSSS---------CSCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cCCCCCCchhcCCccCCCCCEeECCCcc-cCCCCEEEeeccCCCC---------CccHhHHHHHHHHHHHHHcCCCccCC
Confidence 99 45 677899998889999999999 89999999999998 5 7889999999999999998532
Q ss_pred ---CCceeeecchhHHHH
Q 013810 407 ---RNWCWFFDVCSLTSI 421 (436)
Q Consensus 407 ---~~~~~~~~~~~~~~~ 421 (436)
.+++.+++..+.+++
T Consensus 346 ~~~~p~~~~~~~~~a~vG 363 (468)
T 2qae_A 346 YGVIPAVIYTMPEVASVG 363 (468)
T ss_dssp TTSCCEEECSSSEEEEEE
T ss_pred CCCCCEEEECCCceEEEe
Confidence 234545555444444
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=315.67 Aligned_cols=285 Identities=20% Similarity=0.282 Sum_probs=214.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc---------------------Ccccccccccc-
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------------GTLEFRSVAEP- 119 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~- 119 (436)
++||+|||||+||++||..|++.|++|+|||+++.++......+... ...++..+...
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRK 83 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHH
Confidence 47999999999999999999999999999998776543311110000 00001000000
Q ss_pred -----hh--hcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCcee--eeccEEEEeCCCCCCCCCCCCC
Q 013810 120 -----IA--RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK--ISYDKLVIALGAEASTFGIHGV 190 (436)
Q Consensus 120 -----~~--~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~--~~~d~lViAtG~~~~~~~i~g~ 190 (436)
+. .....+....++.++.+++..++.. .+.+.. .+|. . +.||+||||||+.|+.|++||.
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~--~~~V~~-~~g~--------~~~~~~d~lviAtG~~p~~p~i~G~ 152 (466)
T 3l8k_A 84 DYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPT--HVIVKT-DEGK--------EIEAETRYMIIASGAETAKLRLPGV 152 (466)
T ss_dssp HHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETT--EEEEEE-TTSC--------EEEEEEEEEEECCCEEECCCCCTTG
T ss_pred HhheeccccchHHHHHHhCCCEEEEeEEEEecCC--eEEEEc-CCCc--------EEEEecCEEEECCCCCccCCCCCCc
Confidence 11 2222344567899999999989865 344432 3454 5 9999999999999999999997
Q ss_pred ccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEE
Q 013810 191 KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHV 270 (436)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V 270 (436)
+ .++ +..++..+.. .+... +++++|||+|++|+|+|..|++++ .+|
T Consensus 153 ~-~~~---t~~~~~~~~~------~l~~~----------~~~vvViGgG~~g~e~A~~l~~~g--------------~~V 198 (466)
T 3l8k_A 153 E-YCL---TSDDIFGYKT------SFRKL----------PQDMVIIGAGYIGLEIASIFRLMG--------------VQT 198 (466)
T ss_dssp G-GSB---CHHHHHSTTC------SCCSC----------CSEEEEECCSHHHHHHHHHHHHTT--------------CEE
T ss_pred c-ceE---eHHHHHHHHH------HHhhC----------CCeEEEECCCHHHHHHHHHHHHcC--------------CEE
Confidence 5 322 3333321111 11222 349999999999999999999876 899
Q ss_pred EEEeCC-CCCCcc-cHHHHHHHHHHHHhcCCEEEecc-eEEEeC---Ce--EEEc--CCc--EEecceEEEecCCCCch-
Q 013810 271 TLIEAN-EILSSF-DDRLRHYATTQLSKSGVRLVRGI-VKDVDS---QK--LILN--DGT--EVPYGLLVWSTGVGPST- 337 (436)
Q Consensus 271 ~lv~~~-~~l~~~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~~--v~~~--~g~--~i~~D~vi~a~G~~p~~- 337 (436)
+++++. .+++.+ ++++.+.+.+.++ |+++.+. |.+++. +. +.+. +|+ ++++|.|++|+|++|+.
T Consensus 199 tlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 199 HIIEMLDRALITLEDQDIVNTLLSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp EEECSSSSSCTTSCCHHHHHHHHHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence 999995 577877 9999998888876 9999984 888865 33 5566 666 79999999999999994
Q ss_pred h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 338 L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 338 ~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+ ++..+++++++| |.||+++| |+.|+|||+|||++. ++++..|..||+.||+||...
T Consensus 276 l~l~~~gl~~~~~G-i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 276 EGAREIGLSISKTG-IVVDETMK-TNIPNVFATGDANGL---------APYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp TTTGGGTCCBCSSS-BCCCTTCB-CSSTTEEECGGGTCS---------CCSHHHHHHHHHHHHHHHHTT
T ss_pred cchhhcCceeCCCC-EeECCCcc-CCCCCEEEEEecCCC---------CccHhHHHHHHHHHHHHHhCC
Confidence 3 788899999999 99999999 899999999999986 789999999999999999854
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=311.63 Aligned_cols=281 Identities=20% Similarity=0.327 Sum_probs=212.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhh-----cCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC-----VGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~-----~~~------~~~~ 114 (436)
.++||+|||||+||++||..|++.|++|+|||++. ++..... + ... .+. .++.
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~-~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-LGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDWP 81 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCHH
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC-CCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35899999999999999999999999999999974 2211000 0 000 000 0000
Q ss_pred cccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+.. .+...........++.++.+++..++. +.+.+ ++. ++.||+||||||+.|..|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~----~g~--------~~~~d~lviAtGs~p~~p~i 147 (463)
T 2r9z_A 82 RLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV----EGQ--------RLSADHIVIATGGRPIVPRL 147 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE----TTE--------EEEEEEEEECCCEEECCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE----CCE--------EEEcCEEEECCCCCCCCCCC
Confidence 0000 000001112234688998888777764 45554 444 79999999999999999999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||. +.++ +..+... +...| ++++|||+|.+|+|+|..|++++
T Consensus 148 ~G~-~~~~---~~~~~~~----------~~~~~----------~~vvVvGgG~~g~e~A~~l~~~G-------------- 189 (463)
T 2r9z_A 148 PGA-ELGI---TSDGFFA----------LQQQP----------KRVAIIGAGYIGIELAGLLRSFG-------------- 189 (463)
T ss_dssp TTG-GGSB---CHHHHHH----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCc-ccee---cHHHHhh----------hhccC----------CEEEEECCCHHHHHHHHHHHhcC--------------
Confidence 987 3322 2222221 12223 49999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCc-EEecceEEEecCCCCc-h-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGT-EVPYGLLVWSTGVGPS-T-L 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~-~i~~D~vi~a~G~~p~-~-~ 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++. + .|++.+|+ ++++|.|++|+|++|+ + +
T Consensus 190 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l 269 (463)
T 2r9z_A 190 SEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDL 269 (463)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTS
T ss_pred CEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCC
Confidence 899999995 57788999999999999999999999995 888864 2 57778998 8999999999999999 3 3
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++.++++++++|+|.||+++| |+.|+|||+|||++. +.++..|..||+.+|.||..
T Consensus 270 ~~~~~g~~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 270 GLEAAGIEVQSNGMVPTDAYQN-TNVPGVYALGDITGR---------DQLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp CHHHHTCCCCTTSCCCCCTTSB-CSSTTEEECGGGGTS---------CCCHHHHHHHHHHHHHHHHS
T ss_pred CchhcCCccCCCCCEeECCCCc-cCCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHHcC
Confidence 567789999899999999999 999999999999975 67899999999999999975
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=296.03 Aligned_cols=286 Identities=17% Similarity=0.161 Sum_probs=206.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCccccccc-ccchhhcchhhhcCCCcEEEEeE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
.++||+|||||+||++||..|++.|++|+|||+.. ..............+.+... ...+...........++.++.++
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 93 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAV-AGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGVE 93 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETCC
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC-CCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEee
Confidence 34799999999999999999999999999999853 21110000000000000000 01122222223445678887788
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHHhccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
|+.++.+.+.+.+.. ++. .+.||+||+|||+.|+.|++||.+.. .++..... ...
T Consensus 94 v~~i~~~~~~~~v~~--~~~--------~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~-----~~~------- 151 (319)
T 3cty_A 94 VRSIKKTQGGFDIET--NDD--------TYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTC-----DGY------- 151 (319)
T ss_dssp EEEEEEETTEEEEEE--SSS--------EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHH-----HGG-------
T ss_pred EEEEEEeCCEEEEEE--CCC--------EEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEec-----chh-------
Confidence 999987777655543 444 78999999999999999999886431 12111110 000
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
....++++|||+|++|+|+|..|.+.+ .+|+++++.+.+. .++ .+.+.+.+
T Consensus 152 ----------~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~i~~~~~~~-~~~----~l~~~l~~ 202 (319)
T 3cty_A 152 ----------LFKGKRVVTIGGGNSGAIAAISMSEYV--------------KNVTIIEYMPKYM-CEN----AYVQEIKK 202 (319)
T ss_dssp ----------GGBTSEEEEECCSHHHHHHHHHHTTTB--------------SEEEEECSSSSCC-SCH----HHHHHHHH
T ss_pred ----------hcCCCeEEEECCCHHHHHHHHHHHhhC--------------CcEEEEEcCCccC-CCH----HHHHHHhc
Confidence 022358999999999999999998765 8999999865443 223 34456668
Q ss_pred cCCEEEecc-eEEEeCC-----eEEEc---CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 297 SGVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
.||+++.+. +.+++.+ ++.+. +|+ ++++|.||+|+|+.|+ ++++.++++++++|+|.||+++| |+.|
T Consensus 203 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~-t~~~ 281 (319)
T 3cty_A 203 RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQR-TSVP 281 (319)
T ss_dssp TTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCB-CSST
T ss_pred CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCc-cCCC
Confidence 899999984 8888643 46665 665 6999999999999999 68888899999999999999999 9999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+|||+|||+..+ ++++..|+.||+.||.||.....
T Consensus 282 ~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~ 316 (319)
T 3cty_A 282 GVYAAGDVTSGN--------FAQIASAVGDGCKAALSLYSDSI 316 (319)
T ss_dssp TEEECSTTBTTC--------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEeecccCcc--------hhhHHHHHHHHHHHHHHHHHHhh
Confidence 999999999852 47899999999999999987654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=316.36 Aligned_cols=307 Identities=18% Similarity=0.200 Sum_probs=220.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc---------ceecchhhhh--------------------hcCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---------MVFTPLLAST--------------------CVGT 110 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~---------~~~~~~~~~~--------------------~~~~ 110 (436)
+.++||+||||||||++||..|++.|++|+|||+... ++......+. ..+.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 86 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGW 86 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3468999999999999999999999999999994211 1111000000 0000
Q ss_pred -------ccccccccchhhc-------chhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEE
Q 013810 111 -------LEFRSVAEPIARI-------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (436)
Q Consensus 111 -------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lVi 176 (436)
.++..+....... ........++.++.+.+..++.. .+.+.. .++. +.+.||+|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~--~v~v~~-~~g~-------~~~~~d~lvi 156 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSH--TLLAKL-KSGE-------RTITAQTFVI 156 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEEC-TTCC-------EEEEEEEEEE
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCC--EEEEEe-CCCe-------EEEEcCEEEE
Confidence 0110000001111 01122345788888877777644 444432 2332 2699999999
Q ss_pred eCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHH
Q 013810 177 ALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (436)
Q Consensus 177 AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~ 256 (436)
|||+.|+.|++||.+...++. .+. +.+...| ++++|||+|++|+|+|..|++++
T Consensus 157 ATGs~p~~p~i~G~~~~~~~~---~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g--- 210 (483)
T 3dgh_A 157 AVGGRPRYPDIPGAVEYGITS---DDL----------FSLDREP----------GKTLVVGAGYIGLECAGFLKGLG--- 210 (483)
T ss_dssp CCCEEECCCSSTTHHHHCBCH---HHH----------TTCSSCC----------CEEEEECCSHHHHHHHHHHHHTT---
T ss_pred eCCCCcCCCCCCCcccccCcH---HHH----------hhhhhcC----------CcEEEECCCHHHHHHHHHHHHcC---
Confidence 999999999999975433322 111 1122333 38999999999999999999877
Q ss_pred HHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCc-----EEecc
Q 013810 257 VRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGT-----EVPYG 325 (436)
Q Consensus 257 ~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~-----~i~~D 325 (436)
.+|++++++.+++.+++++.+.+.+.|++.||+++.+. +.+++. + .|++.++. ++++|
T Consensus 211 -----------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D 279 (483)
T 3dgh_A 211 -----------YEPTVMVRSIVLRGFDQQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYD 279 (483)
T ss_dssp -----------CEEEEEESSCSSTTSCHHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEES
T ss_pred -----------CEEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcC
Confidence 89999999888899999999999999999999999994 888863 2 26666553 79999
Q ss_pred eEEEecCCCCc-hhc--ccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhh
Q 013810 326 LLVWSTGVGPS-TLV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPS 402 (436)
Q Consensus 326 ~vi~a~G~~p~-~~~--~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 402 (436)
.|++|+|++|+ .++ +..++++++ |+|.||+++| |+.|+|||+|||+.. .+++++.|..||+.||+||
T Consensus 280 ~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~~-t~~~~IyA~GD~~~~--------~~~~~~~A~~~g~~aa~~i 349 (483)
T 3dgh_A 280 TVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQEA-TNVANIYAVGDIIYG--------KPELTPVAVLAGRLLARRL 349 (483)
T ss_dssp EEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTCB-CSSTTEEECSTTBTT--------SCCCHHHHHHHHHHHHHHH
T ss_pred EEEECcccccCcCcCCchhcCccccC-CEEEECcCCc-cCCCCEEEEEcccCC--------CCccHHHHHHHHHHHHHHH
Confidence 99999999999 454 788999988 9999999999 999999999999842 1788999999999999999
Q ss_pred hhhc--------CCceeeecchhHHHHHH
Q 013810 403 FLLA--------RNWCWFFDVCSLTSILN 423 (436)
Q Consensus 403 ~~~~--------~~~~~~~~~~~~~~~~~ 423 (436)
+... .+++.+.+..+..++++
T Consensus 350 ~g~~~~~~~~~~~p~~~~~~p~~a~vGlt 378 (483)
T 3dgh_A 350 YGGSTQRMDYKDVATTVFTPLEYACVGLS 378 (483)
T ss_dssp HSCCCCCCCCTTCCEEECSSSEEEEEECC
T ss_pred cCCCCCcCCCCCCCEEEECCCccEEEeCC
Confidence 8532 34555656555555533
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=312.14 Aligned_cols=292 Identities=17% Similarity=0.207 Sum_probs=211.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCcc------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGTL------EFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~~------~~~~ 115 (436)
++||+|||||+||++||..|++.|++|+|||+++.+.......+. ..+.. +...
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 85 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDM 85 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCHHH
Confidence 479999999999999999999999999999997654321100000 00100 0000
Q ss_pred ccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcc----cCCCCceeeeccEEEEeCCCCCCC
Q 013810 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR----TLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~----~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+.. .+...........++.++.+.+..++. +.+.+... +|.. .......++.||+||+|||+.|..
T Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~~~-~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~~ 162 (482)
T 1ojt_A 86 LRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDP--HHLEVSLT-AGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTK 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET--TEEEEEEE-EEEETTEEEEEEEEEEEEEEEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccC--CEEEEEec-CCcccccccccCcceEEEcCEEEECCCCCCCC
Confidence 000 000001122344678888887655553 45554321 2200 000001278999999999999988
Q ss_pred CC-CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|+ ++ .+..++ +..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 163 ~~~i~-~~~~v~---~~~~~~~----------~~~~~----------~~vvViGgG~ig~E~A~~l~~~G---------- 208 (482)
T 1ojt_A 163 LPFIP-EDPRII---DSSGALA----------LKEVP----------GKLLIIGGGIIGLEMGTVYSTLG---------- 208 (482)
T ss_dssp CSSCC-CCTTEE---CHHHHTT----------CCCCC----------SEEEEESCSHHHHHHHHHHHHHT----------
T ss_pred CCCCC-ccCcEE---cHHHHhc----------ccccC----------CeEEEECCCHHHHHHHHHHHHcC----------
Confidence 77 66 333222 3332221 22223 49999999999999999999877
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcC----CcEEecceEEEecCC
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILND----GTEVPYGLLVWSTGV 333 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~----g~~i~~D~vi~a~G~ 333 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++.+. |.+++.+ .+++.+ |+++++|.|++|+|+
T Consensus 209 ----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~ 284 (482)
T 1ojt_A 209 ----SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 284 (482)
T ss_dssp ----CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred ----CeEEEEEECCccccccCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCC
Confidence 899999995 67888999999999999999999999994 8888642 366666 778999999999999
Q ss_pred CCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 334 GPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 334 ~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+|+ ++ ++.++++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||.||..
T Consensus 285 ~p~~~~l~~~~~gl~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 285 APNGKLISAEKAGVAVTDRGFIEVDKQMR-TNVPHIYAIGDIVGQ---------PMLAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp EECGGGTTGGGTTCCCCTTSCCCCCTTSB-CSSTTEEECGGGTCS---------SCCHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCChhhcCceeCCCCCEeeCCCcc-cCCCCEEEEEcccCC---------CccHHHHHHHHHHHHHHHcC
Confidence 999 45 688899999889999999999 899999999999985 67899999999999999985
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=299.77 Aligned_cols=287 Identities=16% Similarity=0.141 Sum_probs=194.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhh---------cCcccccccccchhhcchhhhcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---------VGTLEFRSVAEPIARIQPAISREP 131 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 131 (436)
..+||+||||||||++||.+|++.|++|+|||+.......+. +.+ .+...... ...+...........
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~--G~~~~~~~i~~~~g~~~~i~-~~~l~~~~~~~~~~~ 79 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAG--GQLTTTTIIENFPGFPNGID-GNELMMNMRTQSEKY 79 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTT--CGGGGSSEECCSTTCTTCEE-HHHHHHHHHHHHHHT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccC--CCcCChHHhhhccCCcccCC-HHHHHHHHHHHHhhc
Confidence 358999999999999999999999999999998754222110 110 01100000 011222222234456
Q ss_pred CcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc-cccccChHHHHHHHHHH
Q 013810 132 GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN-ATFLREVHHAQEIRRKL 210 (436)
Q Consensus 132 ~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~-~~~~~~~~~~~~~~~~~ 210 (436)
+..+....+.............. .++. ++.||+||||||++|+.|++||.+.. ..............
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~--------~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~--- 147 (314)
T 4a5l_A 80 GTTIITETIDHVDFSTQPFKLFT-EEGK--------EVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAV--- 147 (314)
T ss_dssp TCEEECCCEEEEECSSSSEEEEE-TTCC--------EEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTS---
T ss_pred CcEEEEeEEEEeecCCCceEEEE-CCCe--------EEEEeEEEEcccccccccCCCccccccccceeeehhhhhhh---
Confidence 67777777777776655544432 3444 89999999999999999999997521 12222221111100
Q ss_pred HHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~ 290 (436)
....+++++|||+|++|+|+|..|++++ .+|+++++...... .+. ..
T Consensus 148 ---------------~~~~~~~vvViGgG~ig~e~A~~l~~~G--------------~~Vt~v~~~~~~~~-~~~---~~ 194 (314)
T 4a5l_A 148 ---------------PIFRNKVLMVVGGGDAAMEEALHLTKYG--------------SKVIILHRRDAFRA-SKT---MQ 194 (314)
T ss_dssp ---------------GGGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHH---HH
T ss_pred ---------------hhcCCCeEEEECCChHHHHHHHHHHHhC--------------Ceeeeecccccccc-cch---hh
Confidence 0123458999999999999999999877 89999998543221 122 23
Q ss_pred HHHHHhcCCEEEecc-eEEEeC-----CeEEE-----cCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCC
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDS-----QKLIL-----NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~-----~~v~~-----~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~ 358 (436)
.+.+...+++.+... +.++.. .++.+ .+++++++|.|++++|++|+ +++. ..+..+++|++ ||+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~-~~~~~~~~G~i-v~~~~ 272 (314)
T 4a5l_A 195 ERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLG-GQVKTADDGYI-LTEGP 272 (314)
T ss_dssp HHHHTCTTEEEECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCB-CCBTT
T ss_pred hhhhcccceeeEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHhc-ccceEcCCeeE-eCCCC
Confidence 344555677777663 555532 22333 34567999999999999999 4554 45777888866 88899
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
| |+.|+|||+|||++.+ .+++..|+.||+.||.+|..+.
T Consensus 273 ~-Ts~pgIyA~GDv~~~~--------~~~~~~A~~~G~~AA~~~~~yL 311 (314)
T 4a5l_A 273 K-TSVDGVFACGDVCDRV--------YRQAIVAAGSGCMAALSCEKWL 311 (314)
T ss_dssp B-CSSTTEEECSTTTCSS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-cCCCCEEEEEeccCCc--------chHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999863 4678899999999999997654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=310.77 Aligned_cols=285 Identities=21% Similarity=0.297 Sum_probs=212.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----hh-----------hh-----cCcc------cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------TC-----VGTL------EFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~~-----------~~-----~~~~------~~~~ 115 (436)
++||+|||||+||++||..|++.|++|+|||++ .+...... +. .. .+.. +...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 81 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAK 81 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCHHH
Confidence 478999999999999999999999999999997 32211000 00 00 0000 0000
Q ss_pred ccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCC-cccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE-LRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g-~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
+.. .+...........++.++.+++..++. +.+.+.. .+| . ++.||+||+|||++|..|++
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~--~~v~V~~-~~G~~--------~i~~d~lViATGs~p~~~~~ 150 (455)
T 1ebd_A 82 VQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA--NTVRVVN-GDSAQ--------TYTFKNAIIATGSRPIELPN 150 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEET--TEEEEEE-TTEEE--------EEECSEEEECCCEEECCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CeEEEEe-CCCcE--------EEEeCEEEEecCCCCCCCCC
Confidence 000 011111223445689998887766664 3455432 234 3 78999999999999999998
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
+|.+..++ +..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 151 ~g~~~~v~---~~~~~~~----------~~~~~----------~~vvViGgG~~g~e~A~~l~~~g-------------- 193 (455)
T 1ebd_A 151 FKFSNRIL---DSTGALN----------LGEVP----------KSLVVIGGGYIGIELGTAYANFG-------------- 193 (455)
T ss_dssp BCCCSSEE---CHHHHHT----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCccceEe---cHHHHhc----------cccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 88754322 3333221 12223 49999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--CeE--EEc---CCcEEecceEEEecCCCCc-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN---DGTEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~v--~~~---~g~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|.+++. +.+ .+. +++++++|.||+|+|++|+ +
T Consensus 194 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 194 TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred CcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 899999995 5778899999999999999999999998 4888864 333 333 4567999999999999999 4
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
+ ++.++++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||+||...
T Consensus 274 ~l~~~~~g~~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 274 ELGLEQIGIKMTNRGLIEVDQQCR-TSVPNIFAIGDIVPG---------PALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp SSSTTTTTCCBCTTSCBCCCTTCB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHTSC
T ss_pred cCChhhcCCccCCCCCEeeCCCcc-cCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHcCC
Confidence 5 678889998899999999999 999999999999985 678999999999999999853
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=316.59 Aligned_cols=309 Identities=18% Similarity=0.148 Sum_probs=221.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc--------ceecchhhh---------------h------hcCccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH--------MVFTPLLAS---------------T------CVGTLE 112 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~--------~~~~~~~~~---------------~------~~~~~~ 112 (436)
.|||+||||||||++||.++++.|.+|+|||+... ++...+..+ . ..|. .
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi-~ 120 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW-K 120 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE-E
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc-c
Confidence 48999999999999999999999999999997532 221100000 0 0000 0
Q ss_pred ccccccch--------------hhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 113 FRSVAEPI--------------ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 113 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
......++ ........+..++.++.+...-++. +.+.+....+.. ..+.+.+|++||||
T Consensus 121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~-----~~~~i~a~~iiIAT 193 (542)
T 4b1b_A 121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLS-----KEETVTGKYILIAT 193 (542)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CC-----CEEEEEEEEEEECC
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCC-----ceEEEeeeeEEecc
Confidence 00000000 0001112334678888877666654 344443211111 02379999999999
Q ss_pred CCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 179 GAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 179 G~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
|++|..|+.++.. +.+++..+ .+.+..+|. +++|||||++|+|+|..++++|
T Consensus 194 Gs~P~~P~~~~~~~~~~~ts~~-------------~l~l~~lP~----------~lvIIGgG~IGlE~A~~~~~lG---- 246 (542)
T 4b1b_A 194 GCRPHIPDDVEGAKELSITSDD-------------IFSLKKDPG----------KTLVVGASYVALECSGFLNSLG---- 246 (542)
T ss_dssp CEEECCCSSSBTHHHHCBCHHH-------------HTTCSSCCC----------SEEEECCSHHHHHHHHHHHHHT----
T ss_pred CCCCCCCCcccCCCccccCchh-------------hhccccCCc----------eEEEECCCHHHHHHHHHHHhcC----
Confidence 9999988655443 33333222 134667776 9999999999999999999998
Q ss_pred HhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecC
Q 013810 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G 332 (436)
.+||+++++++++.+++++.+.+.+.|++.||+++.+. +.+++. + .|.+.+++++.+|.|++|+|
T Consensus 247 ----------~~VTii~~~~~L~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvG 316 (542)
T 4b1b_A 247 ----------YDVTVAVRSIVLRGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIG 316 (542)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSC
T ss_pred ----------CeEEEecccccccccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccc
Confidence 99999999889999999999999999999999999994 766653 3 35667888999999999999
Q ss_pred CCCc-hh--cccCCCCCCCCCc-EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh---
Q 013810 333 VGPS-TL--VKSLDLPKSPGGR-IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL--- 405 (436)
Q Consensus 333 ~~p~-~~--~~~~~l~~~~~G~-i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--- 405 (436)
++|| +. ++..++.++.+|. |.+|+++| |+.|+|||+|||+.. +|.+++.|..||+.|++||+..
T Consensus 317 R~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~-Ts~p~IyAiGDv~~~--------~p~La~~A~~eg~~aa~~i~g~~~~ 387 (542)
T 4b1b_A 317 RKGDIDGLNLESLNMNVNKSNNKIIADHLSC-TNIPSIFAVGDVAEN--------VPELAPVAIKAGEILARRLFKDSDE 387 (542)
T ss_dssp EEESCGGGCGGGTTCCEETTTTEECCCTTSB-CSSTTEEECTTSBTT--------CCCCHHHHHHHHHHHHHHHHSCCCC
T ss_pred ccCCccccCcccceeeecccCceEecccccc-ccCCCeEEeccccCC--------chhHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999 32 5666787776655 57889999 999999999999964 2689999999999999999853
Q ss_pred -----cCCceeeecchhHHHHHHH
Q 013810 406 -----ARNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 406 -----~~~~~~~~~~~~~~~~~~~ 424 (436)
..|++.+.+..+..++++.
T Consensus 388 ~~d~~~iP~~vft~PeiA~VGlTE 411 (542)
T 4b1b_A 388 IMDYSYIPTSIYTPIEYGACGYSE 411 (542)
T ss_dssp CCCCSSCCEEECSSSCEEEEECCH
T ss_pred ccCCCCCceEEeCCCCeEEEeCCH
Confidence 2456666666666666443
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=315.83 Aligned_cols=291 Identities=19% Similarity=0.257 Sum_probs=205.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-------ch---h-----hhhh-----cCc-----cccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------PL---L-----ASTC-----VGT-----LEFRSV 116 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-------~~---~-----~~~~-----~~~-----~~~~~~ 116 (436)
++||+|||||+||++||..|++.|++|+|||+++. +.. |. + .... .+. .++..+
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~-GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSRL-GGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLL 80 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSST-THHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCc-CccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHHHH
Confidence 47999999999999999999999999999999852 111 10 0 0000 000 000000
Q ss_pred c-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEe----------cCCcccCCCCceeeeccEEEEeCC
Q 013810 117 A-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETV----------TDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 117 ~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~----------~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
. ..+...........++.++.+++..++. +.+.+... .++. ++.||+||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~--------~~~~d~lViAtG 150 (500)
T 1onf_A 81 VERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEE--------ILEGRNILIAVG 150 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------------CBSSEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCce--------EEEeCEEEECCC
Confidence 0 0011111122345688998887766654 44544320 1133 789999999999
Q ss_pred CCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 180 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
+.|..|++||.+ .+++. .++. .+.. +++++|||+|++|+|+|..|++++
T Consensus 151 s~p~~p~i~G~~-~~~~~---~~~~----------~~~~-----------~~~vvViGgG~ig~E~A~~l~~~g------ 199 (500)
T 1onf_A 151 NKPVFPPVKGIE-NTISS---DEFF----------NIKE-----------SKKIGIVGSGYIAVELINVIKRLG------ 199 (500)
T ss_dssp CCBCCCSCTTGG-GCEEH---HHHT----------TCCC-----------CSEEEEECCSHHHHHHHHHHHTTT------
T ss_pred CCCCCCCCCCCC-cccCH---HHHh----------ccCC-----------CCeEEEECChHHHHHHHHHHHHcC------
Confidence 999999999873 33322 1111 1111 349999999999999999999876
Q ss_pred hhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcCCcE-EecceEEEec
Q 013810 260 RYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILNDGTE-VPYGLLVWST 331 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~g~~-i~~D~vi~a~ 331 (436)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++. |++++.+ .|++++|++ +++|.||+|+
T Consensus 200 --------~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~ 271 (500)
T 1onf_A 200 --------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 271 (500)
T ss_dssp --------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred --------CeEEEEecCCccCcccchhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECC
Confidence 899999994 67888999999999999999999999995 8888642 467788988 9999999999
Q ss_pred CCCCch--h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccC------------------------CC-Ccc
Q 013810 332 GVGPST--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLES------------------------TG-KTV 383 (436)
Q Consensus 332 G~~p~~--~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~------------------------~~-~~~ 383 (436)
|++|+. + ++.+++++ ++|+|.||+++| |+.|+|||+|||+..+.. ++ ...
T Consensus 272 G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~-t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 349 (500)
T 1onf_A 272 GRSPDTENLKLEKLNVET-NNNYIVVDENQR-TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFY 349 (500)
T ss_dssp CBCCTTTTSSCTTTTCCB-SSSCEEECTTCB-CSSSSEEECSTTEEEC------------------------------CB
T ss_pred CCCcCCCCCCchhcCccc-cCCEEEECCCcc-cCCCCEEEEeccccccccccccccccccccccccccccccccccccCC
Confidence 999994 4 67889988 789999999999 999999999999943210 00 002
Q ss_pred CCccHHHHHHHHHHHHhhhhh
Q 013810 384 LPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 384 ~~~~~~~A~~~g~~aa~~i~~ 404 (436)
.+++++.|.+||+.||+||..
T Consensus 350 ~~~~~~~A~~~g~~aa~~i~g 370 (500)
T 1onf_A 350 NVQLTPVAINAGRLLADRLFL 370 (500)
T ss_dssp CCCCHHHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHHhC
Confidence 377899999999999999975
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=294.39 Aligned_cols=284 Identities=17% Similarity=0.176 Sum_probs=201.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---hhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---TCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
++||+|||||+||++||..|++.|++|+|||++. ......... ...+.... -....+...........++.++.+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~gv~~~~~ 85 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-PGGQIAWSEEVENFPGFPEP-IAGMELAQRMHQQAEKFGAKVEMD 85 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTGGGGGCSCBCCSTTCSSC-BCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCC-CCcccccccccccCCCCCCC-CCHHHHHHHHHHHHHHcCCEEEee
Confidence 4799999999999999999999999999999973 211111000 00010000 001122222222344567888888
Q ss_pred EeEeEeCC--CCE-EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHH
Q 013810 139 HCAGIDTD--NHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 139 ~v~~id~~--~~~-v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~ 212 (436)
+|+.++.+ .+. +.+.. .++. .+.||+||+|||+.|+.|++||.+. ..++.....+ ...
T Consensus 86 ~v~~i~~~~~~~~~~~v~~-~~g~--------~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~-----~~~-- 149 (325)
T 2q7v_A 86 EVQGVQHDATSHPYPFTVR-GYNG--------EYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCD-----GFF-- 149 (325)
T ss_dssp CEEEEEECTTSSSCCEEEE-ESSC--------EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHH-----GGG--
T ss_pred eEEEEEeccCCCceEEEEE-CCCC--------EEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCC-----HHH--
Confidence 99999876 432 22221 2555 7999999999999999999998753 1122111111 000
Q ss_pred hccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHH
Q 013810 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (436)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~ 292 (436)
..+++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+. .++.+ ..+
T Consensus 150 ---------------~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~---~~~ 196 (325)
T 2q7v_A 150 ---------------YKGKKVVVIGGGDAAVEEGMFLTKFA--------------DEVTVIHRRDTLR-ANKVA---QAR 196 (325)
T ss_dssp ---------------GTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCC-SCHHH---HHH
T ss_pred ---------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeCCCcCC-cchHH---HHH
Confidence 22358999999999999999998765 8999999965432 23332 223
Q ss_pred HHHhcCCEEEecc-eEEEeCC----eEEEc---CCc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDSQ----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVP 361 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~~----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t 361 (436)
.+++.||+++.+. +++++.+ +|++. +|+ ++++|.||+|+|++|+ ++++.+ ++++++|+|.||+++| |
T Consensus 197 l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~-t 274 (325)
T 2q7v_A 197 AFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIY-T 274 (325)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTB-C
T ss_pred HHhcCCceEecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCc-c
Confidence 3344699999984 8888654 56775 675 7999999999999999 677776 7788899999999999 8
Q ss_pred CCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 362 ~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.|+|||+|||+..+ ++++..|+.||+.||.||....
T Consensus 275 ~~~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l 311 (325)
T 2q7v_A 275 NIPMLFAAGDVSDYI--------YRQLATSVGAGTRAAMMTERQL 311 (325)
T ss_dssp SSTTEEECSTTTCSS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeecccCcc--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999852 5789999999999999998654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-37 Score=304.92 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=218.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------hh-----c-Cc------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TC-----V-GT------LEF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~~-----~-~~------~~~ 113 (436)
.++||+|||||+||++||.+|++.|++|+|||++. ++......+ .. . |. .+.
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 81 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCCCH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCccCH
Confidence 35899999999999999999999999999999973 211100000 00 0 10 000
Q ss_pred ccccc-------chhh-cchhhhcCC-CcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 114 RSVAE-------PIAR-IQPAISREP-GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 114 ~~~~~-------~~~~-~~~~~~~~~-~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+.. .+.. ....+.... ++.++.+++..++.. .+.+.. .+|. +..+.||+||||||++|+.
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lviAtGs~p~~ 152 (467)
T 1zk7_A 82 SKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQ--SLTVRL-NEGG------ERVVMFDRCLVATGASPAV 152 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETT--EEEEEE-TTSS------EEEEECSEEEECCCEEECC
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCC--EEEEEe-CCCc------eEEEEeCEEEEeCCCCCCC
Confidence 10000 0000 011223344 899999988888754 444432 2441 1178999999999999999
Q ss_pred CCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 185 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
|++||.+... ..+..++.+ +... +++++|||+|++|+|+|..|.+++
T Consensus 153 p~i~G~~~~~--~~~~~~~~~----------~~~~----------~~~vvViGgG~~g~E~A~~l~~~g----------- 199 (467)
T 1zk7_A 153 PPIPGLKESP--YWTSTEALA----------SDTI----------PERLAVIGSSVVALELAQAFARLG----------- 199 (467)
T ss_dssp CCCTTTTTSC--CBCHHHHHH----------CSSC----------CSEEEEECCSHHHHHHHHHHHHTT-----------
T ss_pred CCCCCCCcCc--eecHHHHhc----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC-----------
Confidence 9999975321 123333222 1222 349999999999999999999876
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc-h
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~-~ 337 (436)
.+|+++++. .+++ +++++.+.+.+.+++.||+++.+. |.+++. +. |.++ +.++++|.||+|+|.+|+ .
T Consensus 200 ---~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 200 ---SKVTVLARNTLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTR 274 (467)
T ss_dssp ---CEEEEECSSCTTTT-SCHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCT
T ss_pred ---CEEEEEEECCccCC-CCHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCC
Confidence 899999995 5677 899999999999999999999984 888853 22 4444 568999999999999998 3
Q ss_pred h--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-------CC
Q 013810 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA-------RN 408 (436)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~-------~~ 408 (436)
+ ++..+++++++|+|.||+++| |+.|+|||+|||+.. +..+..|..||+.||.||.... .+
T Consensus 275 ~l~l~~~gl~~~~~G~i~vd~~~~-t~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p 344 (467)
T 1zk7_A 275 SLALDAAGVTVNAQGAIVIDQGMR-TSNPNIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMTGGDAALDLTAMP 344 (467)
T ss_dssp TSCGGGGTCCBCTTSCBCCCTTCB-CSSTTEEECSTTBSS---------CCCHHHHHHHHHHHHHHHTTCCCCCCCTTCE
T ss_pred cCCchhcCCcCCCCCCEEECCCcc-cCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHcCCCcccCCCCCC
Confidence 3 577889988899999999999 899999999999986 6789999999999999997532 23
Q ss_pred ceeeecchhHHHH
Q 013810 409 WCWFFDVCSLTSI 421 (436)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (436)
++.+++.....+|
T Consensus 345 ~~~~~~~~~a~vG 357 (467)
T 1zk7_A 345 AVVFTDPQVATVG 357 (467)
T ss_dssp EEECSSSEEEEEE
T ss_pred EEEecCCceEEEe
Confidence 4445555444444
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=299.57 Aligned_cols=293 Identities=15% Similarity=0.148 Sum_probs=206.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC----cceecchhhhh---hcCcccccccccchhhcchhhhcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN----HMVFTPLLAST---CVGTLEFRSVAEPIARIQPAISREPG 132 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (436)
.+++||+|||||+|||+||..|++.|++|+|||+.+ ........... ..+..... ....+...........+
T Consensus 20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGL-TGSELMDRMREQSTKFG 98 (338)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCE-EHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccC-CHHHHHHHHHHHHHHcC
Confidence 345899999999999999999999999999999965 21111000000 00111100 01122222223344568
Q ss_pred cEEEEeEeEeEeCCCCEEEEEEe--cCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHH
Q 013810 133 SYFFLSHCAGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKL 210 (436)
Q Consensus 133 ~~~~~~~v~~id~~~~~v~~~~~--~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~ 210 (436)
+.++.+.|+.++.+.+.+.+... .++. .+.||+||+|||+.++.|++||.+.. ....+.....+...+
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~--------~~~~d~vvlAtG~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~ 168 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAE--------PVTTDAIILATGASAKRMHLPGEETY--WQKGISACAVCDGAV 168 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSC--------CEEEEEEEECCCEEECCCCCTTHHHH--BTTTEESCHHHHTTS
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCc--------EEEeCEEEECcCCCcCCCCCCCchhc--cCccEEEchhcccch
Confidence 88888889999998888877543 2333 78999999999999999999986421 111111111111100
Q ss_pred HHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~ 290 (436)
+ ...+++++|||+|++|+|+|..|.+.+ .+|+++++.+.+.. .+.+
T Consensus 169 ---------~------~~~~~~v~vvG~G~~g~e~a~~l~~~g--------------~~v~~v~~~~~~~~-----~~~~ 214 (338)
T 3itj_A 169 ---------P------IFRNKPLAVIGGGDSACEEAQFLTKYG--------------SKVFMLVRKDHLRA-----STIM 214 (338)
T ss_dssp ---------G------GGTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-----CHHH
T ss_pred ---------h------hcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCccCC-----CHHH
Confidence 0 123458999999999999999998765 89999999654322 2334
Q ss_pred HHHHHhc-CCEEEecc-eEEEeCCe-----EEEcC-----CcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEe-CC
Q 013810 291 TTQLSKS-GVRLVRGI-VKDVDSQK-----LILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGI-DE 356 (436)
Q Consensus 291 ~~~l~~~-gV~i~~~~-v~~i~~~~-----v~~~~-----g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~v-d~ 356 (436)
.+.+.+. ||+++.+. +.+++.+. |++.+ ++++++|.||+|+|+.|+ .++.. +++++++|++.+ |+
T Consensus 215 ~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~ 293 (338)
T 3itj_A 215 QKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPG 293 (338)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTT
T ss_pred HHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCc
Confidence 4555554 99999984 88887542 77765 467999999999999999 46655 888899999995 77
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+++ |+.|+|||+|||+..+ ++.+..|+.||+.||.+|.....
T Consensus 294 ~~~-t~~~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~ 335 (338)
T 3itj_A 294 SSL-TSVPGFFAAGDVQDSK--------YRQAITSAGSGCMAALDAEKYLT 335 (338)
T ss_dssp SSB-CSSTTEEECGGGGCSS--------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc-cCCCCEEEeeccCCCC--------ccceeeehhhhHHHHHHHHHHHh
Confidence 788 8999999999999742 68899999999999999987654
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=297.34 Aligned_cols=283 Identities=15% Similarity=0.127 Sum_probs=185.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCccccccc-ccchhhcchhhhcCCCcEEEEe-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-AEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
..+||+||||||||++||.+|++.|++|+|||+... .......+...+.+..... ...+..............+...
T Consensus 5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~-gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (312)
T 4gcm_A 5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIP-GGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGD 83 (312)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT-TGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CCeeecccccCCcCCccccchHHHHHHHHHHHhhcccccccee
Confidence 358999999999999999999999999999998532 1111000000000100000 0011111111122233444443
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
.+...+........ .++. ++.||+||||||++|+.|++||.+.. ..+.....+...
T Consensus 84 ~~~~~~~~~~~~~~---~~~~--------~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~---------- 142 (312)
T 4gcm_A 84 IKSVEDKGEYKVIN---FGNK--------ELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAF---------- 142 (312)
T ss_dssp CCEEEECSSCEEEE---CSSC--------EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGG----------
T ss_pred eeeeeeeecceeec---cCCe--------EEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccc----------
Confidence 33334443333322 2454 89999999999999999999997531 122221111100
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCcccHHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFDDRLRHYATTQL 294 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~~~~~~~~~~~~~l 294 (436)
..+++|+|||+|++|+|+|..|++++ .+|+++++.+ +++.. ....+.+
T Consensus 143 ------------~~~k~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~~~~~-----~~~~~~~ 191 (312)
T 4gcm_A 143 ------------FKNKRLFVIGGGDSAVEEGTFLTKFA--------------DKVTIVHRRDELRAQR-----ILQDRAF 191 (312)
T ss_dssp ------------GTTCEEEEECCSHHHHHHHHHHTTTC--------------SEEEEECSSSSCCSCH-----HHHHHHH
T ss_pred ------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEecccccCcch-----hHHHHHH
Confidence 22359999999999999999998876 8999999964 43321 1223455
Q ss_pred HhcCCEEEecc-eEEEe--CC---e--EE-E--cCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCC
Q 013810 295 SKSGVRLVRGI-VKDVD--SQ---K--LI-L--NDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPS 362 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~--~~---~--v~-~--~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~ 362 (436)
+..++...... +..+. .. . .. . .++..+++|.|++++|..|+ .++..+++. +++|+|.||+++| |+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~-~~~G~I~vd~~~~-Ts 269 (312)
T 4gcm_A 192 KNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGIT-NDVGYIVTKDDMT-TS 269 (312)
T ss_dssp HCTTEEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCB-CTTSCBCCCTTSB-CS
T ss_pred HhcCcceeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCchhHHhccee-cCCCeEeeCCCCc-cC
Confidence 66677776653 22221 11 1 11 1 23357999999999999999 577777775 5689999999999 99
Q ss_pred CCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 363 VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 363 ~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+|+|||+|||++.+ +++++.|+.||+.||.||..+.
T Consensus 270 ~pgIyA~GDv~~~~--------~~~~~~A~~~G~~AA~~i~~~L 305 (312)
T 4gcm_A 270 VPGIFAAGDVRDKG--------LRQIVTATGDGSIAAQSAAEYI 305 (312)
T ss_dssp STTEEECSTTBSCS--------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCc--------chHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999742 5789999999999999998654
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=312.31 Aligned_cols=286 Identities=19% Similarity=0.239 Sum_probs=211.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----hh-----------hh------cCcc-----cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------TC------VGTL-----EFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~~-----------~~------~~~~-----~~~~ 115 (436)
++||+|||||+||++||..|++.|++|+|||++. +...... +. .. .+.. ++..
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGI 81 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHHH
Confidence 4799999999999999999999999999999973 2111000 00 00 0000 0000
Q ss_pred ccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 116 VAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 116 ~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
+.. .+...........++.++.+.+..+ +.+.+.+.. .+|. ..++.||+||+|||+.|+.|+++
T Consensus 82 ~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~-~~G~------~~~~~~d~lViAtG~~~~~~~~~ 152 (464)
T 2a8x_A 82 AYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDL-NDGG------TESVTFDNAIIATGSSTRLVPGT 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEE-TTSC------CEEEEEEEEEECCCEEECCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEe-CCCc------eEEEEcCEEEECCCCCCCCCCCC
Confidence 000 0001111223346788887765544 345565543 2441 01799999999999999999988
Q ss_pred CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
|.+..+ .+..++.. +...| ++++|||+|++|+|+|..|.+++ .
T Consensus 153 g~~~~~---~~~~~~~~----------~~~~~----------~~vvViGgG~~g~E~A~~l~~~g--------------~ 195 (464)
T 2a8x_A 153 SLSANV---VTYEEQIL----------SRELP----------KSIIIAGAGAIGMEFGYVLKNYG--------------V 195 (464)
T ss_dssp CCBTTE---ECHHHHHT----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred CCCceE---EecHHHhh----------ccccC----------CeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 875432 23333221 12223 49999999999999999999876 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC--e--EEEc-CC--cEEecceEEEecCCCCc-hh
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ--K--LILN-DG--TEVPYGLLVWSTGVGPS-TL 338 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~--~--v~~~-~g--~~i~~D~vi~a~G~~p~-~~ 338 (436)
+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ . +.+. +| +++++|.|++|+|++|+ ++
T Consensus 196 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~ 275 (464)
T 2a8x_A 196 DVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG 275 (464)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence 99999995 67888999999999999999999999994 8888643 2 3443 66 67999999999999999 45
Q ss_pred --cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++.++++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||+||..
T Consensus 276 l~~~~~gl~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 276 YGLDKAGVALTDRKAIGVDDYMR-TNVGHIYAIGDVNGL---------LQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp SCHHHHTCCBCTTSSBCCCTTSB-CSSTTEEECGGGGCS---------SCSHHHHHHHHHHHHHHHHT
T ss_pred CCchhcCCccCCCCCEeECcCCc-cCCCCEEEeECcCCC---------ccCHHHHHHHHHHHHHHhcC
Confidence 677899998889999999999 999999999999985 67899999999999999986
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=313.68 Aligned_cols=282 Identities=19% Similarity=0.226 Sum_probs=209.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch----hhh-----------h-----hcCc-----cccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------T-----CVGT-----LEFRSV 116 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~----~~~-----------~-----~~~~-----~~~~~~ 116 (436)
++||+|||||+||++||..|++.|++|+|||+++ ++.... .+. . ..|. .+...+
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 84 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLKKL 84 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHHHH
Confidence 4899999999999999999999999999999986 211100 000 0 0010 000000
Q ss_pred ccc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC-CC
Q 013810 117 AEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG-IH 188 (436)
Q Consensus 117 ~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~-i~ 188 (436)
... +......+.+..++.++.+++..++. +.+.+. +. ++.||+||||||++|+.|+ ++
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~v~v~----g~--------~~~~d~lViATGs~p~~p~gi~ 150 (464)
T 2eq6_A 85 GGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP--KEVEVG----GE--------RYGAKSLILATGSEPLELKGFP 150 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET----TE--------EEEEEEEEECCCEEECCBTTBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC--CEEEEc----cE--------EEEeCEEEEcCCCCCCCCCCCC
Confidence 000 00001122344688998887766663 455542 43 7999999999999998876 77
Q ss_pred CCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 189 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
+. ..++ +..++.++ .. ..+++++|||+|++|+|+|..|++++ .
T Consensus 151 ~~-~~v~---~~~~~~~l----------~~---------~~~~~vvViGgG~~g~e~A~~l~~~g--------------~ 193 (464)
T 2eq6_A 151 FG-EDVW---DSTRALKV----------EE---------GLPKRLLVIGGGAVGLELGQVYRRLG--------------A 193 (464)
T ss_dssp CS-SSEE---CHHHHTCG----------GG---------CCCSEEEEECCSHHHHHHHHHHHHTT--------------C
T ss_pred CC-CcEE---cHHHHHhh----------hh---------hcCCEEEEECCCHHHHHHHHHHHHCC--------------C
Confidence 62 3333 33332221 11 02249999999999999999999876 8
Q ss_pred EEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce--EEEc-C--Cc--EEecceEEEecCCCCc-
Q 013810 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN-D--GT--EVPYGLLVWSTGVGPS- 336 (436)
Q Consensus 269 ~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~-~--g~--~i~~D~vi~a~G~~p~- 336 (436)
+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|.+++. +. +.+. + |+ ++++|.|++|+|++|+
T Consensus 194 ~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~ 273 (464)
T 2eq6_A 194 EVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT 273 (464)
T ss_dssp EEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred eEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence 99999995 5778889999999999999999999999 4888864 22 5555 6 76 8999999999999999
Q ss_pred hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 337 TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 337 ~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++ ++..+++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||+||...
T Consensus 274 ~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~l~~~A~~~g~~aa~~i~g~ 334 (464)
T 2eq6_A 274 EGLGLEKAGVKVDERGFIRVNARME-TSVPGVYAIGDAARP---------PLLAHKAMREGLIAAENAAGK 334 (464)
T ss_dssp TTSSHHHHTCCBCTTSCBCCCTTCB-CSSTTEEECGGGTCS---------SCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhhcCceecCCCCEEECCCcc-cCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHhcCC
Confidence 44 577889888899999999999 899999999999986 678999999999999999853
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=318.67 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=220.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--------cceecchhhh---------------h-----hcCc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFTPLLAS---------------T-----CVGT-- 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--------~~~~~~~~~~---------------~-----~~~~-- 110 (436)
.++||+||||||||++||..|++.|++|+|||+.+ .++......+ . ..|.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~ 84 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV 84 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence 35899999999999999999999999999999732 2221100000 0 0000
Q ss_pred -----ccccccccchhh-------cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 111 -----LEFRSVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 111 -----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
.++..+...... .........++.++.+++..++. +.+.+.. .+|. ..++.||+|||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~--~~v~v~~-~~g~------~~~~~~d~lViAT 155 (488)
T 3dgz_A 85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDE--HTVRGVD-KGGK------ATLLSAEHIVIAT 155 (488)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSS--SEEEEEC-TTSC------EEEEEEEEEEECC
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CeEEEEe-CCCc------eEEEECCEEEEcC
Confidence 000000000000 01112234578888888776664 3454432 2332 1278999999999
Q ss_pred CCCCCCCC-CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 179 GAEASTFG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 179 G~~~~~~~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
|+.|+.|+ +||.+...++. .+. +.+...| ++++|||+|++|+|+|..|++++
T Consensus 156 Gs~p~~p~~i~G~~~~~~~~---~~~----------~~~~~~~----------~~vvViGgG~ig~E~A~~l~~~g---- 208 (488)
T 3dgz_A 156 GGRPRYPTQVKGALEYGITS---DDI----------FWLKESP----------GKTLVVGASYVALECAGFLTGIG---- 208 (488)
T ss_dssp CEEECCCSSCBTHHHHCBCH---HHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCCCcccccCcH---HHH----------HhhhhcC----------CeEEEECCCHHHHHHHHHHHHcC----
Confidence 99999998 99975433322 111 1123334 38999999999999999999876
Q ss_pred HhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---C--eEEEcC---Cc--EEecce
Q 013810 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q--KLILND---GT--EVPYGL 326 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~--~v~~~~---g~--~i~~D~ 326 (436)
.+|+++++..+++.+++++.+.+.+.|++.||+++.+. +.+++. + .+.+.+ |+ ++++|.
T Consensus 209 ----------~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~ 278 (488)
T 3dgz_A 209 ----------LDTTVMMRSIPLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDT 278 (488)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESE
T ss_pred ----------CceEEEEcCcccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCE
Confidence 89999999888899999999999999999999999994 777753 2 245544 54 479999
Q ss_pred EEEecCCCCc-hh--cccCCCCCC-CCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhh
Q 013810 327 LVWSTGVGPS-TL--VKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPS 402 (436)
Q Consensus 327 vi~a~G~~p~-~~--~~~~~l~~~-~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 402 (436)
|++|+|++|+ .+ ++..+++++ ++|+|.||+++| |+.|+|||+|||+.. .+++++.|..||+.||+||
T Consensus 279 vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~--------~~~~~~~A~~~g~~aa~~i 349 (488)
T 3dgz_A 279 VLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQEA-TSVPHIYAIGDVAEG--------RPELTPTAIKAGKLLAQRL 349 (488)
T ss_dssp EEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTSB-CSSTTEEECGGGBTT--------CCCCHHHHHHHHHHHHHHH
T ss_pred EEEcccCCcccCcCCccccCcEecCCCCeEeECCCCc-cCCCCEEEeEEecCC--------CCcchhHHHHHHHHHHHHH
Confidence 9999999999 44 677899998 789999999999 899999999999842 1778999999999999999
Q ss_pred hhhc--------CCceeeecchhHHHHHH
Q 013810 403 FLLA--------RNWCWFFDVCSLTSILN 423 (436)
Q Consensus 403 ~~~~--------~~~~~~~~~~~~~~~~~ 423 (436)
+... .+++.+.+..+..++++
T Consensus 350 ~g~~~~~~~~~~~p~~~~~~p~~a~vGlt 378 (488)
T 3dgz_A 350 FGKSSTLMDYSNVPTTVFTPLEYGCVGLS 378 (488)
T ss_dssp HSCCCCCCCCTTCCEEECSSSEEEEEECC
T ss_pred cCCCCccCCCCCCCEEEECCCCeEEEeCC
Confidence 8532 34566556655555533
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=315.37 Aligned_cols=308 Identities=20% Similarity=0.209 Sum_probs=219.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------------hcCcc------cc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------------CVGTL------EF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------------~~~~~------~~ 113 (436)
+++||+||||||||++||..|++.|++|+|||+++.++......+. ..+.. ++
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 103 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNL 103 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCccCH
Confidence 4589999999999999999999999999999997765432110000 00000 00
Q ss_pred cccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+. ..+...........++.++.+.+..++. +.+.+.. .+|. ..++.||+||||||+.| +.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~-~~g~------~~~~~~d~lViATGs~p--~~ 172 (491)
T 3urh_A 104 QKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQ--GKVSVTN-EKGE------EQVLEAKNVVIATGSDV--AG 172 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSS--SEEEEEC-TTSC------EEEEECSEEEECCCEEC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC--CEEEEEe-CCCc------eEEEEeCEEEEccCCCC--CC
Confidence 0000 0001111122344678888887766554 4555542 2342 12789999999999986 46
Q ss_pred CCCCcc--ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCC
Q 013810 187 IHGVKE--NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (436)
Q Consensus 187 i~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~ 264 (436)
+||.+. ....+.+..+.. .+...| ++|+|||+|++|+|+|..|++++
T Consensus 173 ipg~~~~~~~~~~~~~~~~~----------~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g----------- 221 (491)
T 3urh_A 173 IPGVEVAFDEKTIVSSTGAL----------ALEKVP----------ASMIVVGGGVIGLELGSVWARLG----------- 221 (491)
T ss_dssp BTTBCCCCCSSSEECHHHHT----------SCSSCC----------SEEEEECCSHHHHHHHHHHHHHT-----------
T ss_pred CCCcccccCCeeEEehhHhh----------hhhhcC----------CeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 677641 111122222211 122233 49999999999999999999887
Q ss_pred CCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcC---C--cEEecceEEEecCC
Q 013810 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILND---G--TEVPYGLLVWSTGV 333 (436)
Q Consensus 265 ~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~---g--~~i~~D~vi~a~G~ 333 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. +.+++. +. +.+.+ | +++++|.||+|+|+
T Consensus 222 ---~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~ 298 (491)
T 3urh_A 222 ---AKVTVVEFLDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGR 298 (491)
T ss_dssp ---CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCC
T ss_pred ---CEEEEEeccccccccCCHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCC
Confidence 899999985 67888999999999999999999999984 888764 22 45542 5 57999999999999
Q ss_pred CCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc----
Q 013810 334 GPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA---- 406 (436)
Q Consensus 334 ~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~---- 406 (436)
+|+ ++ ++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||+||+...
T Consensus 299 ~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~ 368 (491)
T 3urh_A 299 KPSTDGLGLAKAGVVLDSRGRVEIDRHFQ-TSIAGVYAIGDVVRG---------PMLAHKAEDEGVAVAEIIAGQAGHVN 368 (491)
T ss_dssp EECCTTSCHHHHTCCBCTTSCBCCCTTCB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred ccCCCccCchhcCceECCCCCEeECCCCC-CCCCCEEEEEecCCC---------ccchhHHHHHHHHHHHHHcCCCcccC
Confidence 999 44 677899999999999999999 899999999999976 7899999999999999998532
Q ss_pred ---CCceeeecchhHHHHHH
Q 013810 407 ---RNWCWFFDVCSLTSILN 423 (436)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~ 423 (436)
.+++.+++..+..+|++
T Consensus 369 ~~~~p~~~~~~p~~a~vGlt 388 (491)
T 3urh_A 369 YDVIPGVVYTQPEVASVGKT 388 (491)
T ss_dssp TTCCCEEECSSSCEEEEECC
T ss_pred CCCCCEEEEccCCeEEEeCC
Confidence 34555566655555533
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-38 Score=313.19 Aligned_cols=288 Identities=20% Similarity=0.266 Sum_probs=213.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh---------------------hcCcc------cc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------------CVGTL------EF 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~---------------------~~~~~------~~ 113 (436)
.++||+|||||+||++||..|++.|++|+|||+++.+.......+. ..+.. +.
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDL 84 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 3589999999999999999999999999999998755332110000 00100 00
Q ss_pred ccccc-------chhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 114 RSVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 114 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..+.. .+...........++.++.+.+..++. +.+.+.. .+|. ...+.||+||+|||++|..|+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~--~~~~v~~-~~G~------~~~i~~d~lIiAtGs~p~~p~ 155 (470)
T 1dxl_A 85 AAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP--SEISVDT-IEGE------NTVVKGKHIIIATGSDVKSLP 155 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET--TEEEECC-SSSC------CEEEECSEEEECCCEEECCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEEEe-CCCc------eEEEEcCEEEECCCCCCCCCC
Confidence 00000 000111122334578888887666664 3454432 2341 127899999999999999999
Q ss_pred CCCCcc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
++|.+. .+++ ..++.. +...| ++++|||+|++|+|+|..|.+++
T Consensus 156 ~~g~~~~~v~~---~~~~~~----------~~~~~----------~~vvViGgG~~g~e~A~~l~~~g------------ 200 (470)
T 1dxl_A 156 GVTIDEKKIVS---STGALA----------LSEIP----------KKLVVIGAGYIGLEMGSVWGRIG------------ 200 (470)
T ss_dssp TBCCCSSSEEC---HHHHTT----------CSSCC----------SEEEESCCSHHHHHHHHHHHHHT------------
T ss_pred CCCCCcccEEe---HHHhhh----------hhhcC----------CeEEEECCCHHHHHHHHHHHHcC------------
Confidence 988753 3332 222211 12223 49999999999999999999877
Q ss_pred CccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEc---CC--cEEecceEEEecCCC
Q 013810 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVG 334 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~---~g--~~i~~D~vi~a~G~~ 334 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .+.+. +| +++++|.|++|+|++
T Consensus 201 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~ 278 (470)
T 1dxl_A 201 --SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRT 278 (470)
T ss_dssp --CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEE
T ss_pred --CcEEEEEcCCcccccccHHHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCC
Confidence 899999995 57788999999999999999999999994 8888753 23443 45 679999999999999
Q ss_pred Cc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 335 PS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 335 p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|+ ++ ++.++++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||.||..
T Consensus 279 p~~~~l~~~~~gl~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 279 PFTSGLNLDKIGVETDKLGRILVNERFS-TNVSGVYAIGDVIPG---------PMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp ECCTTSCCTTTTCCBCSSSCBCCCTTCB-CSSTTEEECSTTSSS---------CCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCchhcCCccCCCCCEeECcCCc-cCCCCEEEEeccCCC---------CccHHHHHHHHHHHHHHHcC
Confidence 99 45 678899998889999999999 999999999999985 67899999999999999985
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-38 Score=314.58 Aligned_cols=305 Identities=18% Similarity=0.197 Sum_probs=218.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh----------------h-----hcCcccccccccch
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS----------------T-----CVGTLEFRSVAEPI 120 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~----------------~-----~~~~~~~~~~~~~~ 120 (436)
++||+|||||+||++||..|++.|++|+|||+++.+.......+ . ..+...........
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 84 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV 84 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCccCH
Confidence 47999999999999999999999999999999765432210000 0 00100000000000
Q ss_pred hh--------------cchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCcee------eeccEEEEeCCC
Q 013810 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFK------ISYDKLVIALGA 180 (436)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~------~~~d~lViAtG~ 180 (436)
.. .........++.++.+..... +.+.+.+.. .+|.. .. +.||+||+|||+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~-~~G~~------~~~~~~~~i~~d~lViAtGs 155 (478)
T 1v59_A 85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTP-VDGLE------GTVKEDHILDVKNIIVATGS 155 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEEC-CTTCT------TCCSSCEEEEEEEEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEe-cCCCc------ccccccceEEeCEEEECcCC
Confidence 00 011123346788888765443 445555543 23310 15 899999999999
Q ss_pred CCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 013810 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (436)
Q Consensus 181 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~ 260 (436)
.|+ .+||.+.....+.+..++.. +...| ++++|||+|++|+|+|..|++++
T Consensus 156 ~p~--~~~g~~~~~~~v~~~~~~~~----------~~~~~----------~~vvViGgG~~g~e~A~~l~~~g------- 206 (478)
T 1v59_A 156 EVT--PFPGIEIDEEKIVSSTGALS----------LKEIP----------KRLTIIGGGIIGLEMGSVYSRLG------- 206 (478)
T ss_dssp EEC--CCTTCCCCSSSEECHHHHTT----------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT-------
T ss_pred CCC--CCCCCCCCCceEEcHHHHHh----------hhccC----------ceEEEECCCHHHHHHHHHHHHcC-------
Confidence 874 45555311112223332221 12223 49999999999999999999876
Q ss_pred hcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC---C---eEEEc-----CCcEEecceE
Q 013810 261 YSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN-----DGTEVPYGLL 327 (436)
Q Consensus 261 ~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~---~v~~~-----~g~~i~~D~v 327 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |++++. + .+.+. +++++++|.|
T Consensus 207 -------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~v 279 (478)
T 1v59_A 207 -------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVL 279 (478)
T ss_dssp -------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEE
T ss_pred -------CEEEEEEeCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEE
Confidence 899999995 57788999999999999999999999994 888864 2 34554 3567999999
Q ss_pred EEecCCCCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 328 VWSTGVGPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 328 i~a~G~~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|+|+|++|+ + +++.++++++++|+|.||+++| |+.|+|||+|||+.. +++++.|..||+.||+||..
T Consensus 280 v~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 280 LVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN-SKFPHIKVVGDVTFG---------PMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp EECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCcCCCCCCchhcCceeCCCCCEeECcCCc-cCCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHHcC
Confidence 999999999 4 6788899999899999999999 999999999999986 67899999999999999985
Q ss_pred hc-------CCceeeecchhHHHH
Q 013810 405 LA-------RNWCWFFDVCSLTSI 421 (436)
Q Consensus 405 ~~-------~~~~~~~~~~~~~~~ 421 (436)
.. .+++|+++..+.++|
T Consensus 350 ~~~~~~~~~~p~~~~~~~~~a~vG 373 (478)
T 1v59_A 350 GHGHVNYNNIPSVMYSHPEVAWVG 373 (478)
T ss_dssp SCCCCCTTSCCEEECSSSEEEEEE
T ss_pred CCCCCCCCCCCEEEEcCCcEEEEE
Confidence 32 357777776655554
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=314.29 Aligned_cols=306 Identities=19% Similarity=0.219 Sum_probs=219.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc---------------------------Ccc--
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV---------------------------GTL-- 111 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~---------------------------~~~-- 111 (436)
.++||+|||||+||++||..|++.|++|+|||+++.......+.+.+. +..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~ 81 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 358999999999999999999999999999999862211111111100 000
Q ss_pred ----cccccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 112 ----EFRSVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 112 ----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
++.... ..+......+....++.++.+++..++.. .+.+.. .+|. ...+.||+||||||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~-~~g~------~~~~~~d~lvlAtG~ 152 (476)
T 3lad_A 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGK--KVEVTA-ADGS------SQVLDTENVILASGS 152 (476)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTT--CEEEEC-TTSC------EEEECCSCEEECCCE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCC--EEEEEc-CCCc------eEEEEcCEEEEcCCC
Confidence 000000 00111111223345788888887776554 344432 2342 127899999999999
Q ss_pred CCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 181 EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 181 ~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
.|..|+.++.+ ..+++.. +. +.+...| ++++|||+|++|+|+|..|.+++
T Consensus 153 ~p~~~~~~~~~~~~v~~~~---~~----------~~~~~~~----------~~v~ViGgG~~g~e~A~~l~~~g------ 203 (476)
T 3lad_A 153 KPVEIPPAPVDQDVIVDST---GA----------LDFQNVP----------GKLGVIGAGVIGLELGSVWARLG------ 203 (476)
T ss_dssp EECCCTTSCCCSSSEEEHH---HH----------TSCSSCC----------SEEEEECCSHHHHHHHHHHHHTT------
T ss_pred CCCCCCCCCCCcccEEech---hh----------hccccCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 98877665543 3333321 11 1122233 49999999999999999999876
Q ss_pred hhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCC---cEEecceEEEe
Q 013810 260 RYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDG---TEVPYGLLVWS 330 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g---~~i~~D~vi~a 330 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .+.+.++ +++++|.|++|
T Consensus 204 --------~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a 275 (476)
T 3lad_A 204 --------AEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVA 275 (476)
T ss_dssp --------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEEC
T ss_pred --------CcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEe
Confidence 899999995 57888999999999999999999999994 8888632 3556654 67999999999
Q ss_pred cCCCCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc-
Q 013810 331 TGVGPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA- 406 (436)
Q Consensus 331 ~G~~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~- 406 (436)
+|++|+ + .++..+++++++|+|.||+++| |+.|+|||+|||+.. +.++..|..||+.||+||....
T Consensus 276 ~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~~~ 345 (476)
T 3lad_A 276 VGRRPVTTDLLAADSGVTLDERGFIYVDDYCA-TSVPGVYAIGDVVRG---------AMLAHKASEEGVVVAERIAGHKA 345 (476)
T ss_dssp SCEEECCTTCCSSCCSCCBCTTSCBCCCTTSB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHHCCC
T ss_pred eCCcccCCCCCccccCccccCCCCEeeCCCcc-cCCCCEEEEEccCCC---------cccHHHHHHHHHHHHHHhcCCCc
Confidence 999998 3 2778899999999999999999 999999999999975 7799999999999999998533
Q ss_pred ------CCceeeecchhHHHHH
Q 013810 407 ------RNWCWFFDVCSLTSIL 422 (436)
Q Consensus 407 ------~~~~~~~~~~~~~~~~ 422 (436)
.+++.+++..+..+++
T Consensus 346 ~~~~~~~p~~~~~~~~~a~vGl 367 (476)
T 3lad_A 346 QMNYDLIPAVIYTHPEIAGVGK 367 (476)
T ss_dssp CCCTTCCCEEECSSSEEEEEEC
T ss_pred ccCCCCCCEEEECcCCEEEeeC
Confidence 2455555555554443
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=290.80 Aligned_cols=283 Identities=16% Similarity=0.108 Sum_probs=203.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcceecchhhhh---hcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFTPLLAST---CVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+||+|||||+||++||..|++.|+ +|+|||++.. ......... ..+..... ....+...........++.++.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~v~~~~~ 79 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMP-GGQITGSSEIENYPGVKEVV-SGLDFMQPWQEQCFRFGLKHEMT 79 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSSST-TCGGGGCSCBCCSTTCCSCB-CHHHHHHHHHHHHHTTSCEEECS
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCC-CcccccccccccCCCCcccC-CHHHHHHHHHHHHHHcCCEEEEE
Confidence 689999999999999999999999 9999999632 111000000 00100000 01122222223344567888778
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+|+.++.+.+.+.+.. .++. .+.||+||+|||+.|+.|++||.+. ..++.... . ....
T Consensus 80 ~v~~i~~~~~~~~v~~-~~g~--------~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~--~---~~~~----- 140 (311)
T 2q0l_A 80 AVQRVSKKDSHFVILA-EDGK--------TFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCAT--C---DGFF----- 140 (311)
T ss_dssp CEEEEEEETTEEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHH--H---HGGG-----
T ss_pred EEEEEEEcCCEEEEEE-cCCC--------EEECCEEEECCCCCCCCCCCCChhhccCCcEEEeec--C---Chhh-----
Confidence 8999987777555532 3554 7999999999999999999998642 11211111 1 0000
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~ 295 (436)
...++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. .++. +.+.+.
T Consensus 141 ------------~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~----~~~~l~ 189 (311)
T 2q0l_A 141 ------------YKNKEVAVLGGGDTAVEEAIYLANIC--------------KKVYLIHRRDGFR-CAPI----TLEHAK 189 (311)
T ss_dssp ------------GTTSEEEEECCSHHHHHHHHHHHTTS--------------SEEEEECSSSSCC-SCHH----HHHHHH
T ss_pred ------------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEeeCCccC-CCHH----HHHHHh
Confidence 22359999999999999999998765 8999999965443 3333 333444
Q ss_pred -hcCCEEEecc-eEEEeCC-----eEEEc---CCc--EEecceEEEecCCCCc-hhcccCC----CCCCCCCcEEeCCCC
Q 013810 296 -KSGVRLVRGI-VKDVDSQ-----KLILN---DGT--EVPYGLLVWSTGVGPS-TLVKSLD----LPKSPGGRIGIDEWL 358 (436)
Q Consensus 296 -~~gV~i~~~~-v~~i~~~-----~v~~~---~g~--~i~~D~vi~a~G~~p~-~~~~~~~----l~~~~~G~i~vd~~~ 358 (436)
+.||+++.+. +.+++.+ .|++. +|+ ++++|.||+|+|++|+ ++++.++ ++++++|+|.||+++
T Consensus 190 ~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~ 269 (311)
T 2q0l_A 190 NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM 269 (311)
T ss_dssp TCTTEEEETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC
T ss_pred hCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCcc
Confidence 4799999984 8888643 46665 675 6999999999999999 6887775 888889999999999
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
| |+.|+|||+|||+..+ ++++..|+.||+.||.||....
T Consensus 270 ~-t~~~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 270 K-TNVQGLFAAGDIRIFA--------PKQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp B-CSSTTEEECSTTBTTC--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred c-cCCCCeEEcccccCcc--------hHHHHHHHHhHHHHHHHHHHHH
Confidence 9 8999999999999852 6789999999999999998654
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=294.12 Aligned_cols=289 Identities=18% Similarity=0.154 Sum_probs=208.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCccccc-c-cccchhhcchhhhcCCCcEEEEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR-S-VAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
++||+|||||+||++||..|++.|++|+|||+.. ..............+... . ....+...........++.++.++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME-KGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH 83 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS-TTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccCC-CCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee
Confidence 4799999999999999999999999999999752 111100000000000000 0 001122222223445678888888
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
|+.++.+.+.+.+ ..++. .+.||+||+|||+.|..|++||.+. ..++. ... ....+
T Consensus 84 v~~i~~~~~~~~v--~~~~~--------~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~--~~~---~~~~~------ 142 (320)
T 1trb_A 84 INKVDLQNRPFRL--NGDNG--------EYTCDALIIATGASARYLGLPSEEAFKGRGVSA--CAT---SDGFF------ 142 (320)
T ss_dssp EEEEECSSSSEEE--EESSC--------EEEEEEEEECCCEEECCCCCHHHHHTBTTTEES--CHH---HHGGG------
T ss_pred eeEEEecCCEEEE--EeCCC--------EEEcCEEEECCCCCcCCCCCCChHHhCCceeEe--ccc---CCccc------
Confidence 9999987776665 23555 7999999999999999888888642 11111 111 11110
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
..+++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. .++.+.+.+.+.+++
T Consensus 143 -----------~~~~~v~ViG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~~~~~~l~~~l~~ 196 (320)
T 1trb_A 143 -----------YRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDKVEN 196 (320)
T ss_dssp -----------GTTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCC-CCHHHHHHHHHHHHT
T ss_pred -----------cCCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEEeCCccc-cCHHHHHHHHHhccc
Confidence 22358999999999999999998765 8999999965432 356777888888999
Q ss_pred cCCEEEecc-eEEEeCCe-----EEEcC----C--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCC----C
Q 013810 297 SGVRLVRGI-VKDVDSQK-----LILND----G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL----R 359 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~~-----v~~~~----g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~----~ 359 (436)
.||+++.+. +.+++.+. |++.+ | +++++|.||+|+|++|+ ++++ .+++++ +|+|.||+++ +
T Consensus 197 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~-~G~i~vd~~~~~~~~ 274 (320)
T 1trb_A 197 GNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELE-NGYIKVQSGIHGNAT 274 (320)
T ss_dssp SSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEE-TTEECCCCSSSSCTT
T ss_pred CCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-cccccc-CceEEECCCcccccc
Confidence 999999984 88886543 77764 4 57999999999999999 4555 567778 8999999997 2
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
.|+.|+|||+|||+..+ ++.+..|+.||+.||.+|..+..+
T Consensus 275 ~t~~~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 275 QTSIPGVFAAGDVMDHI--------YRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp BCSSTTEEECGGGGCSS--------SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCEEEcccccCCc--------chhhhhhhccHHHHHHHHHHHHHh
Confidence 38999999999999852 578999999999999999876543
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=308.24 Aligned_cols=282 Identities=19% Similarity=0.269 Sum_probs=212.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh---------------h---h--cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------T---C--VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~---------------~---~--~~~------~~~~~ 115 (436)
++||+|||||+||++||..|++.|++|+|||+. .++......+ . . .+. .++..
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDWAK 83 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCHHH
Confidence 479999999999999999999999999999994 3222100000 0 0 000 00000
Q ss_pred cc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC-CCCC
Q 013810 116 VA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGI 187 (436)
Q Consensus 116 ~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~-~~~i 187 (436)
+. ..+...........++.++.+++..++. +.+.+. .++. .+.||+||+|||+.|. .|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~~--~~~~--------~~~~d~lviAtG~~p~~~p~i 151 (463)
T 4dna_A 84 LVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGP--NTVKLL--ASGK--------TVTAERIVIAVGGHPSPHDAL 151 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS--SEEEET--TTTE--------EEEEEEEEECCCEEECCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEe--cCCe--------EEEeCEEEEecCCCcccCCCC
Confidence 00 0111111122334578888887776653 455442 2444 7999999999999999 9999
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
||.+ .++ +..+.. .+...| ++++|||+|++|+|+|..+.+++
T Consensus 152 ~G~~-~~~---~~~~~~----------~~~~~~----------~~v~ViGgG~~g~e~A~~l~~~g-------------- 193 (463)
T 4dna_A 152 PGHE-LCI---TSNEAF----------DLPALP----------ESILIAGGGYIAVEFANIFHGLG-------------- 193 (463)
T ss_dssp TTGG-GCB---CHHHHT----------TCSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------
T ss_pred CCcc-ccc---cHHHHh----------hhhcCC----------CeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9874 222 222211 122223 49999999999999999999876
Q ss_pred cEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEE-EcCCcEEecceEEEecCCCCch-h
Q 013810 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLI-LNDGTEVPYGLLVWSTGVGPST-L 338 (436)
Q Consensus 268 ~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~-~~~g~~i~~D~vi~a~G~~p~~-~ 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|. +.+|+ +++|.||+|+|++|+. +
T Consensus 194 ~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 194 VKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNG 272 (463)
T ss_dssp CEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTT
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCC
Confidence 899999995 57788999999999999999999999984 8888642 467 77887 9999999999999994 4
Q ss_pred --cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 339 --VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 339 --~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++.+|++++++|+|.||+++| |+.|+|||+|||++. +++++.|..||+.||+||...
T Consensus 273 l~l~~~g~~~~~~G~i~vd~~~~-t~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 273 LGLEAAGVRTNELGAIIVDAFSR-TSTPGIYALGDVTDR---------VQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp SSTGGGTCCBCTTSCBCCCTTCB-CSSTTEEECSGGGSS---------CCCHHHHHHHHHHHHHHHHSS
T ss_pred CCccccCceECCCCCEeECcCCC-CCCCCEEEEEecCCC---------CCChHHHHHHHHHHHHHHcCC
Confidence 788899999999999999999 999999999999985 789999999999999999853
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=292.93 Aligned_cols=285 Identities=14% Similarity=0.107 Sum_probs=203.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEE-EcCCCcceecchhhhh---hcCcccccccccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRNHMVFTPLLAST---CVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~l-ie~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||+|||+||..|++.|++|+| ||+. .+......... ..+.... .....+...........++.++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~ 80 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQV-MDGISFMAPWSEQCMRFGLKHE 80 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSC-BCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCC-CCHHHHHHHHHHHHHHcCcEEE
Confidence 357999999999999999999999999999 9994 32221110000 0111100 0111223333334556788888
Q ss_pred EeEeEeEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHH
Q 013810 137 LSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 137 ~~~v~~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~ 211 (436)
.++|+.+ .+. +.+.+. ...+. .+.||+||+|||+.|+.|++||.+. ..++..... ...
T Consensus 81 ~~~v~~i-~~~~~~~~~v~-~~~~~--------~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~-- 143 (315)
T 3r9u_A 81 MVGVEQI-LKNSDGSFTIK-LEGGK--------TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATC-----DGF-- 143 (315)
T ss_dssp CCCEEEE-EECTTSCEEEE-ETTSC--------EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHH-----HGG--
T ss_pred EEEEEEE-ecCCCCcEEEE-EecCC--------EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecc-----ccc--
Confidence 8888888 444 455521 11232 6899999999999999999999753 222221111 110
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~ 291 (436)
...+++++|||+|++|+|+|..|.+.+ .+|+++++.+.+.. ++. .+.
T Consensus 144 ---------------~~~~~~v~viG~g~~~~e~a~~l~~~g--------------~~v~~~~~~~~~~~-~~~---~~~ 190 (315)
T 3r9u_A 144 ---------------FYKNKEVAVLGGGDTALEEALYLANIC--------------SKIYLIHRRDEFRA-APS---TVE 190 (315)
T ss_dssp ---------------GGTTSEEEEECCBHHHHHHHHHHHTTS--------------SEEEEECSSSSCBS-CHH---HHH
T ss_pred ---------------ccCcCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCCCCCC-CHH---HHH
Confidence 022358999999999999999998765 89999999754432 332 344
Q ss_pred HHHHhcCCEEEecc-eEEEeCC-----eEEEc--CCc--EEecceEEEecCCCCc-hhccc---CC-CCCCCCCcEEeCC
Q 013810 292 TQLSKSGVRLVRGI-VKDVDSQ-----KLILN--DGT--EVPYGLLVWSTGVGPS-TLVKS---LD-LPKSPGGRIGIDE 356 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~~-----~v~~~--~g~--~i~~D~vi~a~G~~p~-~~~~~---~~-l~~~~~G~i~vd~ 356 (436)
+.+++.||+++.+. +.+++.+ .|++. +|+ ++++|.|++|+|++|+ .++.. ++ ++++++|+|.||+
T Consensus 191 ~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~ 270 (315)
T 3r9u_A 191 KVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL 270 (315)
T ss_dssp HHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT
T ss_pred HHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC
Confidence 55678899999884 8888653 26665 775 7999999999999999 45554 54 8889999999999
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++| |+.|+|||+|||+..+ ++.+..|+.||+.||.+|....
T Consensus 271 ~~~-t~~~~v~a~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 271 KMQ-TSVAGLFAAGDLRKDA--------PKQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp TCB-CSSTTEEECGGGBTTC--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-cCCCCEEEeecccCCc--------hhhhhhHHhhHHHHHHHHHHHH
Confidence 999 8999999999998642 7899999999999999998654
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=293.62 Aligned_cols=291 Identities=14% Similarity=0.168 Sum_probs=210.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh--hhh-hcCcccccc-cccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL--AST-CVGTLEFRS-VAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||+||+++|..|++.|++|+|||+++.+.+.... +.. ......... ....+...........++.++
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYS 83 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEE
T ss_pred CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 3579999999999999999999999999999998765432110 000 000000000 001111111222333456665
Q ss_pred E-eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC---CCCCCCCCCCccc----ccc-ccChHHHHHHH
Q 013810 137 L-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKEN----ATF-LREVHHAQEIR 207 (436)
Q Consensus 137 ~-~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~---~~~~~~i~g~~~~----~~~-~~~~~~~~~~~ 207 (436)
. .+|+.++.+.+.+.+.. .++. .+.||+||+|||+ .|..|+++|.+.. +.. ..+..
T Consensus 84 ~~~~v~~i~~~~~~~~v~~-~~g~--------~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~------ 148 (335)
T 2zbw_A 84 LGERAETLEREGDLFKVTT-SQGN--------AYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKA------ 148 (335)
T ss_dssp ESCCEEEEEEETTEEEEEE-TTSC--------EEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGG------
T ss_pred eCCEEEEEEECCCEEEEEE-CCCC--------EEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchh------
Confidence 4 48888887665555543 3454 7899999999999 5777788886421 111 11111
Q ss_pred HHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHH
Q 013810 208 RKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLR 287 (436)
Q Consensus 208 ~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~ 287 (436)
...+++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. .+...
T Consensus 149 -------------------~~~~~~v~viG~G~~g~e~a~~l~~~g--------------~~V~~v~~~~~~~~-~~~~~ 194 (335)
T 2zbw_A 149 -------------------EFQGKRVLIVGGGDSAVDWALNLLDTA--------------RRITLIHRRPQFRA-HEASV 194 (335)
T ss_dssp -------------------GGTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCCS-CHHHH
T ss_pred -------------------hcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEcCCccCc-cHHHH
Confidence 012358999999999999999998655 89999999654332 25667
Q ss_pred HHHHHHHHhcCCEEEec-ceEEEeCC----eEEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCC
Q 013810 288 HYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE 356 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~-~v~~i~~~----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~ 356 (436)
+.+.+.+++.||+++.+ .|.+++.+ .|.+. +| +++++|.||+|+|++|+ ++++.++++.+ +|+|.||+
T Consensus 195 ~~l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~ 273 (335)
T 2zbw_A 195 KELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDT 273 (335)
T ss_dssp HHHHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCT
T ss_pred HHHHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCC
Confidence 77888889999999999 48888754 57776 77 57999999999999998 68888888877 78999999
Q ss_pred CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
++| |+.|+|||+|||+..+. .++++..|+.||+.||+||.....+
T Consensus 274 ~~~-t~~~~vya~GD~~~~~~------~~~~~~~A~~~g~~aa~~i~~~l~~ 318 (335)
T 2zbw_A 274 TMA-TSIPGVYACGDIVTYPG------KLPLIVLGFGEAAIAANHAAAYANP 318 (335)
T ss_dssp TCB-CSSTTEEECSTTEECTT------CCCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCC-CCCCCEEEeccccccCc------chhhhhhhHHHHHHHHHHHHHHhhh
Confidence 999 89999999999997532 1678999999999999999876543
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=306.75 Aligned_cols=300 Identities=22% Similarity=0.285 Sum_probs=221.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh--------------------hcCc------cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST--------------------CVGT------LEFR 114 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~--------------------~~~~------~~~~ 114 (436)
.++||+|||||+||++||..|++.|++|+|||+. .++......+. ..+. .++.
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 103 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNWE 103 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCHH
Confidence 3589999999999999999999999999999994 32221000000 0000 0000
Q ss_pred cc-------ccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC-CCC
Q 013810 115 SV-------AEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFG 186 (436)
Q Consensus 115 ~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~-~~~ 186 (436)
.+ ...+...........++.++.+.+..++. +.+.+. .++. .+.||+||||||+.|. .|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~--~~~~--------~~~~d~lviAtG~~p~~~p~ 171 (484)
T 3o0h_A 104 KLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELS--VTGE--------RISAEKILIATGAKIVSNSA 171 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEET--TTCC--------EEEEEEEEECCCEEECCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEe--cCCe--------EEEeCEEEEccCCCcccCCC
Confidence 00 00111111222344688898888887774 345442 1344 7999999999999999 899
Q ss_pred CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 187 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
+||.+ .+++..++.. +...| ++++|||+|++|+|+|..+.+++
T Consensus 172 i~G~~-~~~~~~~~~~-------------~~~~~----------~~v~ViGgG~~g~e~A~~l~~~g------------- 214 (484)
T 3o0h_A 172 IKGSD-LCLTSNEIFD-------------LEKLP----------KSIVIVGGGYIGVEFANIFHGLG------------- 214 (484)
T ss_dssp CBTGG-GSBCTTTGGG-------------CSSCC----------SEEEEECCSHHHHHHHHHHHHTT-------------
T ss_pred CCCcc-ccccHHHHHh-------------HHhcC----------CcEEEECcCHHHHHHHHHHHHcC-------------
Confidence 99874 3333333221 12223 49999999999999999999876
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCch-h-
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L- 338 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~- 338 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+. |.+++.+ .|.+.+|+++++|.||+|+|++|+. +
T Consensus 215 -~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l 293 (484)
T 3o0h_A 215 -VKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGL 293 (484)
T ss_dssp -CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTC
T ss_pred -CeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCC
Confidence 899999995 57888999999999999999999999984 8888653 4778899899999999999999994 4
Q ss_pred -cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc--------CCc
Q 013810 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA--------RNW 409 (436)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~--------~~~ 409 (436)
++..+++++++|+|.||+++| |+.|+|||+|||++. ++++..|..||+.||+||+... .++
T Consensus 294 ~l~~~g~~~~~~G~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~ 363 (484)
T 3o0h_A 294 GLERAGVKVNEFGAVVVDEKMT-TNVSHIWAVGDVTGH---------IQLTPVAIHDAMCFVKNAFENTSTTPDYDLITT 363 (484)
T ss_dssp CHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECGGGGTS---------CCCHHHHHHHHHHHHHHHHC---CCCCCTTCCE
T ss_pred ChhhcCceECCCCCEeECCCCC-CCCCCEEEEEecCCC---------CcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcE
Confidence 677899999999999999999 999999999999985 7899999999999999998532 234
Q ss_pred eeeecchhHHHH
Q 013810 410 CWFFDVCSLTSI 421 (436)
Q Consensus 410 ~~~~~~~~~~~~ 421 (436)
+.+.+..+..++
T Consensus 364 ~~~~~p~~a~vG 375 (484)
T 3o0h_A 364 AVFSQPEIGTVG 375 (484)
T ss_dssp EECCSSCEEEEE
T ss_pred EEECCCCEEEee
Confidence 444445544444
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-37 Score=303.34 Aligned_cols=283 Identities=20% Similarity=0.209 Sum_probs=211.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhh-------------------hcCcc------cccccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST-------------------CVGTL------EFRSVA 117 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~-------------------~~~~~------~~~~~~ 117 (436)
+||+||||||||++||..|++.|++|+|||+++.++......+. ..+.. +...+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPALM 81 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHHHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHHHH
Confidence 68999999999999999999999999999998654322110000 00100 000000
Q ss_pred cc-------hhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCC
Q 013810 118 EP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (436)
Q Consensus 118 ~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~ 190 (436)
.. +...........++.++.+++..++ .+.+.+.. ++. ++.||+||||||++|..|+++|.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~--~g~--------~~~~d~lviAtG~~p~~~~~~g~ 149 (455)
T 2yqu_A 82 AHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEE--TGE--------ELEARYILIATGSAPLIPPWAQV 149 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETT--TCC--------EEEEEEEEECCCEEECCCTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEee--CCE--------EEEecEEEECCCCCCCCCCCCCC
Confidence 00 0000112233457888887766554 34555532 344 79999999999999999998886
Q ss_pred cc-ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE
Q 013810 191 KE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (436)
Q Consensus 191 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (436)
+. .+++. .++. .+...| ++++|||+|++|+|+|..|++.+ .+
T Consensus 150 ~~~~v~~~---~~~~----------~~~~~~----------~~vvIiGgG~~g~e~A~~l~~~g--------------~~ 192 (455)
T 2yqu_A 150 DYERVVTS---TEAL----------SFPEVP----------KRLIVVGGGVIGLELGVVWHRLG--------------AE 192 (455)
T ss_dssp CSSSEECH---HHHT----------CCSSCC----------SEEEEECCSHHHHHHHHHHHHTT--------------CE
T ss_pred CcCcEech---HHhh----------ccccCC----------CeEEEECCCHHHHHHHHHHHHcC--------------CE
Confidence 53 33322 2211 122223 48999999999999999998876 89
Q ss_pred EEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCc-hh--cc
Q 013810 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPS-TL--VK 340 (436)
Q Consensus 270 V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~-~~--~~ 340 (436)
|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|++++. +. +.+++|+++++|.||+|+|.+|+ ++ ++
T Consensus 193 V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~ 272 (455)
T 2yqu_A 193 VIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLE 272 (455)
T ss_dssp EEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGG
T ss_pred EEEEecCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChh
Confidence 9999995 5678889999999999999999999998 4888864 33 44568889999999999999999 44 67
Q ss_pred cCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 341 SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 341 ~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
.++++++++|+|.||+++| |+.|+|||+|||+.. ++++..|..||+.||+||..
T Consensus 273 ~~g~~~~~~g~i~vd~~~~-t~~~~iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 273 NAGLSTDERGRIPVDEHLR-TRVPHIYAIGDVVRG---------PMLAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp GGTCCCCTTSCCCCCTTSB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCccCCCCcEeECCCcc-cCCCCEEEEecCCCC---------ccCHHHHHHhHHHHHHHHcC
Confidence 7889888889999999999 899999999999986 77899999999999999975
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=291.22 Aligned_cols=287 Identities=13% Similarity=0.145 Sum_probs=209.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch--hhhh-hcCcccccc-cccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LAST-CVGTLEFRS-VAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
++||+|||||+||++||..|++.|++|+|||+++.+..... .+.. ......... ....+...........++.++.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL 86 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999999999999999886543211 0000 000000000 0112223333334455788775
Q ss_pred -eEeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCC---CCCCCCCCCCcc---ccccccChHHHHHHHHH
Q 013810 138 -SHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHGVKE---NATFLREVHHAQEIRRK 209 (436)
Q Consensus 138 -~~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~---~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~ 209 (436)
.+|+.++...+ .+.+.. .++ ++.||+||+|||+ .|+.|++||.+. ..++. .+.+...
T Consensus 87 ~~~v~~i~~~~~~~~~v~~-~~g---------~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~---- 151 (332)
T 3lzw_A 87 EQAVESVEKQADGVFKLVT-NEE---------THYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQK---- 151 (332)
T ss_dssp SCCEEEEEECTTSCEEEEE-SSE---------EEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGG----
T ss_pred cCEEEEEEECCCCcEEEEE-CCC---------EEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHH----
Confidence 68999988766 444432 233 6899999999999 888889998753 12222 2221111
Q ss_pred HHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHH
Q 013810 210 LLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY 289 (436)
Q Consensus 210 ~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~ 289 (436)
..+++++|||+|.+|+|+|..|.+.+ .+|+++++.+.+...++.
T Consensus 152 ------------------~~~~~v~vvG~g~~~~e~a~~l~~~~--------------~~v~~~~~~~~~~~~~~~---- 195 (332)
T 3lzw_A 152 ------------------FAGRRVAILGGGDSAVDWALMLEPIA--------------KEVSIIHRRDKFRAHEHS---- 195 (332)
T ss_dssp ------------------GBTCEEEEECSSHHHHHHHHHHTTTB--------------SEEEEECSSSSCSSCHHH----
T ss_pred ------------------cCCCEEEEECCCHhHHHHHHHHHhhC--------------CeEEEEEecCcCCccHHH----
Confidence 22358999999999999999998755 899999997655443332
Q ss_pred HHHHHHhcCCEEEecc-eEEEeCC----eEEEcC-----CcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCC
Q 013810 290 ATTQLSKSGVRLVRGI-VKDVDSQ----KLILND-----GTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~-----g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~ 358 (436)
.+.+++.||+++.+. +.+++.+ .|++.+ ++++++|.||+|+|++|+ ++++.++++. ++|+|.||+++
T Consensus 196 -~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~ 273 (332)
T 3lzw_A 196 -VENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTM 273 (332)
T ss_dssp -HHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTS
T ss_pred -HHHHhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCC
Confidence 234788999999984 8888764 377765 457999999999999998 6888889888 68999999999
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
| |+.|+|||+|||+..+. .++++..|+.||+.||.+|.....+
T Consensus 274 ~-t~~~~vya~GD~~~~~~------~~~~~~~A~~~g~~aa~~i~~~l~~ 316 (332)
T 3lzw_A 274 E-TNIEGFFAAGDICTYEG------KVNLIASGFGEAPTAVNNAKAYMDP 316 (332)
T ss_dssp B-CSSTTEEECGGGEECTT------CCCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred c-eecCCEEEccceecCCC------CcceEeeehhhHHHHHHHHHHhhCh
Confidence 9 89999999999996421 2789999999999999999876654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=283.68 Aligned_cols=284 Identities=18% Similarity=0.177 Sum_probs=200.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec--chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
+||+||||||||++||..|++.|++|+|||+...-.+. ..+.... +.. .. ....+...........++.++.+ +
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~v~~~~~~~ 78 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYI-SVP-KT-EGQKLAGALKVHVDEYDVDVIDSQS 78 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBT-TBS-SE-EHHHHHHHHHHHHHTSCEEEECSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceecccccccccc-CcC-CC-CHHHHHHHHHHHHHHcCCeEEccCE
Confidence 68999999999999999999999999999864210000 0000000 000 00 01122222233344568888887 8
Q ss_pred eEeEeCCCC---EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccc
Q 013810 140 CAGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 140 v~~id~~~~---~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
|+.++.+.. .+.+.. .++. .+.||+||+|||+.|..|++||.++.. ...+.....+...
T Consensus 79 v~~i~~~~~~~~~~~v~~-~~g~--------~~~~~~lv~AtG~~~~~~~~~g~~~~~--~~~~~~~~~~~~~------- 140 (310)
T 1fl2_A 79 ASKLIPAAVEGGLHQIET-ASGA--------VLKARSIIVATGAKWRNMNVPGEDQYR--TKGVTYCPHCDGP------- 140 (310)
T ss_dssp EEEEECCSSTTCCEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCTTTTTTB--TTTEESCHHHHGG-------
T ss_pred EEEEEecccCCceEEEEE-CCCC--------EEEeCEEEECcCCCcCCCCCCChhhcc--cceeEEeccCcHh-------
Confidence 999986532 344432 3554 789999999999999888999875311 0111111111111
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHh
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~ 296 (436)
...+++|+|||+|++|+|+|..|++.+ .+|+++++.+.+. +++ .+.+.+++
T Consensus 141 ----------~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~Vtlv~~~~~~~-~~~----~~~~~l~~ 191 (310)
T 1fl2_A 141 ----------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMK-ADQ----VLQDKLRS 191 (310)
T ss_dssp ----------GGBTCEEEEECCSHHHHHHHHHHHTTB--------------SEEEEECSSSSCC-SCH----HHHHHHHT
T ss_pred ----------hcCCCEEEEECCCHHHHHHHHHHHHhC--------------CEEEEEEeCcccC-ccH----HHHHHHhh
Confidence 023459999999999999999998765 8999999965442 333 34456666
Q ss_pred -cCCEEEec-ceEEEeCC-----eEEEcC---Cc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCC
Q 013810 297 -SGVRLVRG-IVKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSV 363 (436)
Q Consensus 297 -~gV~i~~~-~v~~i~~~-----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~ 363 (436)
.||+++.+ ++.+++.+ .|++.+ |+ ++++|.|++|+|++|+ +++... ++++++|+|.||+++| |+.
T Consensus 192 ~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~-t~~ 269 (310)
T 1fl2_A 192 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCE-TNV 269 (310)
T ss_dssp CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCB-CSS
T ss_pred CCCeEEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCc-cCC
Confidence 69999998 48888653 466653 53 6899999999999998 577653 7788889999999999 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|+|||+|||+..+ ++.+..|+.||+.||.+|....
T Consensus 270 ~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l 304 (310)
T 1fl2_A 270 KGVFAAGDCTTVP--------YKQIIIATGEGAKASLSAFDYL 304 (310)
T ss_dssp TTEEECSTTBSCS--------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeecccCCc--------chhhhhhHhhHHHHHHHHHHHH
Confidence 9999999999862 4688999999999999998754
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=297.85 Aligned_cols=278 Identities=23% Similarity=0.300 Sum_probs=206.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch----hh-----------hhh--------cCccccccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LA-----------STC--------VGTLEFRSVAE 118 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~----~~-----------~~~--------~~~~~~~~~~~ 118 (436)
++||+|||||+||++||..|++.|++|+|||++ .++.... .+ ... .|.. ......
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~-~~~~~~ 82 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGIS-VASPRL 82 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCC-CCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcc-cCCCcc
Confidence 479999999999999999999999999999994 3321100 00 000 1110 000000
Q ss_pred chhhc--------------chhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 119 PIARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+...+ ...+.+..++.++.+++..++ .+.+.+. + . ++.||+||||||++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~---~-~--------~~~~d~lviATGs~p~~ 148 (458)
T 1lvl_A 83 DIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQVEVD---G-Q--------RIQCEHLLLATGSSSVE 148 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTEEEET---T-E--------EEECSEEEECCCEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCEEEEe---e-E--------EEEeCEEEEeCCCCCCC
Confidence 11100 112334568888888766665 3556542 2 3 79999999999999987
Q ss_pred CC-CCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 185 FG-IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 185 ~~-i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
|+ +| .+..++ +..++. .+... +++++|||+|++|+|+|..|++.+
T Consensus 149 ~~~~~-~~~~v~---~~~~~~----------~~~~~----------~~~vvViGgG~~g~e~A~~l~~~g---------- 194 (458)
T 1lvl_A 149 LPMLP-LGGPVI---SSTEAL----------APKAL----------PQHLVVVGGGYIGLELGIAYRKLG---------- 194 (458)
T ss_dssp BTTBC-CBTTEE---CHHHHT----------CCSSC----------CSEEEEECCSHHHHHHHHHHHHHT----------
T ss_pred CCCCC-ccCcEe---cHHHHh----------hhhcc----------CCeEEEECcCHHHHHHHHHHHHCC----------
Confidence 76 55 222222 222221 11222 349999999999999999999877
Q ss_pred CCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeCCeEEEc--CC--cEEecceEEEecCCCCc-
Q 013810 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLILN--DG--TEVPYGLLVWSTGVGPS- 336 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~~~v~~~--~g--~~i~~D~vi~a~G~~p~- 336 (436)
.+|+++++. .+++.+++++.+.+.+.+++.||+++.+ +|.+++.+.+.+. +| +++++|.|++|+|++|+
T Consensus 195 ----~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~ 270 (458)
T 1lvl_A 195 ----AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRT 270 (458)
T ss_dssp ----CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred ----CeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCC
Confidence 899999995 5778889999999999999999999999 4888876445554 56 68999999999999999
Q ss_pred hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 337 TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 337 ~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++ ++.++++++++ +|.||+++| |+.|+|||+|||+.. ++++..|..||+.||+||..
T Consensus 271 ~~l~~~~~g~~~~~~-~i~vd~~~~-t~~~~Iya~GD~~~~---------~~~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 271 KGFNLECLDLKMNGA-AIAIDERCQ-TSMHNVWAIGDVAGE---------PMLAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp SSSSGGGSCCCEETT-EECCCTTCB-CSSTTEEECGGGGCS---------SCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHhcCCcccCC-EEeECCCCc-CCCCCEEEeeccCCC---------cccHHHHHHHHHHHHHHhcC
Confidence 43 57888888777 899999999 999999999999986 67899999999999999985
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=290.49 Aligned_cols=291 Identities=14% Similarity=0.162 Sum_probs=208.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch--hhhh-hcCcccccc-cccchhhcchhhhcCCCcEEE
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LAST-CVGTLEFRS-VAEPIARIQPAISREPGSYFF 136 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 136 (436)
.++||+|||||+||++||..|++.|++|+|||+.+.+..... .+.. ......... ....+.+.........++.++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 92 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVV 92 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEE
Confidence 357999999999999999999999999999999876543211 0000 000000000 001122222222334567765
Q ss_pred E-eEeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCC---CCCCCCCCC-Cccc----ccc-ccChHHHHH
Q 013810 137 L-SHCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGA---EASTFGIHG-VKEN----ATF-LREVHHAQE 205 (436)
Q Consensus 137 ~-~~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~---~~~~~~i~g-~~~~----~~~-~~~~~~~~~ 205 (436)
. .+|+.++...+ .+.+.. .++. .+.||+||+|||+ .|..+++|| .+.. +.+ ..+..+
T Consensus 93 ~~~~v~~i~~~~~~~~~v~~-~~g~--------~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~--- 160 (360)
T 3ab1_A 93 LNETVTKYTKLDDGTFETRT-NTGN--------VYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVED--- 160 (360)
T ss_dssp CSCCEEEEEECTTSCEEEEE-TTSC--------EEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGG---
T ss_pred cCCEEEEEEECCCceEEEEE-CCCc--------EEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHH---
Confidence 5 48888887654 444433 3554 7999999999999 566677777 4321 111 111110
Q ss_pred HHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHH
Q 013810 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR 285 (436)
Q Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~ 285 (436)
..+++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+... +.
T Consensus 161 ----------------------~~~~~vvVvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~~-~~ 203 (360)
T 3ab1_A 161 ----------------------FKGKRVVIVGGGDSALDWTVGLIKNA--------------ASVTLVHRGHEFQGH-GK 203 (360)
T ss_dssp ----------------------GTTCEEEEECSSHHHHHHHHHTTTTS--------------SEEEEECSSSSCSSC-SH
T ss_pred ----------------------cCCCcEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEcCCCCCCC-HH
Confidence 12358999999999999999998655 899999996544333 35
Q ss_pred HHHHHHHHHHhcCCEEEec-ceEEEeCC-----eEEEc--CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEe
Q 013810 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN--DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGI 354 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~-~v~~i~~~-----~v~~~--~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~v 354 (436)
..+.+.+.+++.||+++.+ .+.+++.+ .|.+. +| +++++|.||+|+|+.|+ ++++.++++++ +|+|.|
T Consensus 204 ~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~v 282 (360)
T 3ab1_A 204 TAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVV 282 (360)
T ss_dssp HHHSSHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEEC
T ss_pred HHHHHHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeee
Confidence 5667778888899999999 58888643 56664 77 57999999999999999 58888888877 789999
Q ss_pred CCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 355 DEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 355 d~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
|+++| |+.|+|||+|||+..+. .++++..|+.||..||++|.....+
T Consensus 283 d~~~~-t~~~~vya~GD~~~~~~------~~~~~~~A~~~g~~aa~~i~~~l~~ 329 (360)
T 3ab1_A 283 DSHMK-TSVDGLYAAGDIAYYPG------KLKIIQTGLSEATMAVRHSLSYIKP 329 (360)
T ss_dssp CTTSB-CSSTTEEECSTTEECTT------CCCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCc-CCCCCEEEecCccCCCC------ccceeehhHHHHHHHHHHHHhhcCC
Confidence 99999 89999999999997532 2678999999999999999876554
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=312.40 Aligned_cols=306 Identities=16% Similarity=0.208 Sum_probs=214.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC-Cc-------ceecch----hhhh-----------h-----cCcc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NH-------MVFTPL----LAST-----------C-----VGTL- 111 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~-~~-------~~~~~~----~~~~-----------~-----~~~~- 111 (436)
.++||+||||||||++||.+|++.|++|+|||+. +. +..... ++.. . .|..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~ 185 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL 185 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence 4589999999999999999999999999999973 21 111000 0000 0 0000
Q ss_pred -------cccccccchhhcc-------hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 112 -------EFRSVAEPIARIQ-------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 112 -------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
++..+...+.... .......++.++.+.+..++.. .+.+.. .+|. +.++.||+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~--~v~v~~-~~g~------~~~~~~d~lviA 256 (598)
T 2x8g_A 186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPH--EVQITD-KNQK------VSTITGNKIILA 256 (598)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEEC-TTCC------EEEEEEEEEEEC
T ss_pred cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCC--EEEEEe-CCCC------eEEEEeCEEEEe
Confidence 0000000010000 0012235788887777667653 444432 2342 126899999999
Q ss_pred CCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHH
Q 013810 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (436)
Q Consensus 178 tG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~ 257 (436)
||++|+.|++||.+...++. .++ +.+...| ++|+|||+|++|+|+|..|++++
T Consensus 257 tGs~p~~p~i~G~~~~~~~~---~~~----------~~~~~~~----------~~vvViGgG~~g~E~A~~l~~~g---- 309 (598)
T 2x8g_A 257 TGERPKYPEIPGAVEYGITS---DDL----------FSLPYFP----------GKTLVIGASYVALECAGFLASLG---- 309 (598)
T ss_dssp CCEEECCCSSTTHHHHCEEH---HHH----------TTCSSCC----------CSEEEECCSHHHHHHHHHHHHTT----
T ss_pred CCCCCCCCCCCCcccceEcH---HHH----------hhCccCC----------CEEEEECCCHHHHHHHHHHHHcC----
Confidence 99999999999965432221 111 1112223 48999999999999999999877
Q ss_pred HhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEe--------C---CeEE----EcCCcE
Q 013810 258 RQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVD--------S---QKLI----LNDGTE 321 (436)
Q Consensus 258 ~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--------~---~~v~----~~~g~~ 321 (436)
.+|+++++..+++.+++++.+.+.+.+++.||+++.+. +.+++ . +.+. +.+|++
T Consensus 310 ----------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~ 379 (598)
T 2x8g_A 310 ----------GDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKK 379 (598)
T ss_dssp ----------CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCE
T ss_pred ----------CEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcE
Confidence 89999999877888999999999999999999999984 55552 2 3332 357776
Q ss_pred Ee--cceEEEecCCCCc-hh--cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHH
Q 013810 322 VP--YGLLVWSTGVGPS-TL--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLH 396 (436)
Q Consensus 322 i~--~D~vi~a~G~~p~-~~--~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~ 396 (436)
++ +|.||+|+|++|+ ++ ++..+++++++|+|.||+++| |+.|+|||+|||+.. .+.++..|+.||+
T Consensus 380 ~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~-ts~~~VyA~GD~~~~--------~~~~~~~A~~~g~ 450 (598)
T 2x8g_A 380 FEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ-TTVSNVYAIGDINAG--------KPQLTPVAIQAGR 450 (598)
T ss_dssp EEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTTSB-CSSTTEEECGGGBTT--------SCCCHHHHHHHHH
T ss_pred EeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCCCc-CCCCCEEEEeeecCC--------CCccHHHHHHhHH
Confidence 55 9999999999999 45 567889999999999999999 999999999999643 1678999999999
Q ss_pred HHHhhhhhhc--------CCceeeecchhHHHH
Q 013810 397 LFQKPSFLLA--------RNWCWFFDVCSLTSI 421 (436)
Q Consensus 397 ~aa~~i~~~~--------~~~~~~~~~~~~~~~ 421 (436)
.||.||.... .+++++++.....++
T Consensus 451 ~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG 483 (598)
T 2x8g_A 451 YLARRLFAGATELTDYSNVATTVFTPLEYGACG 483 (598)
T ss_dssp HHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEE
T ss_pred HHHHHHhcCCCcccCCCCCcEEEECCCceEEEe
Confidence 9999998532 245666655554444
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=302.87 Aligned_cols=301 Identities=16% Similarity=0.175 Sum_probs=213.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----h-----------hhh-----cCc------ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC-----VGT------LEFRS 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~-----------~~~-----~~~------~~~~~ 115 (436)
++||+||||||||++||..|++.|++|+|||+++ ++..... + ... .|. .+...
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 86 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNGKA 86 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCHHH
Confidence 4799999999999999999999999999999975 2221100 0 000 000 01111
Q ss_pred cccchhhcc--------hhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 116 VAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 116 ~~~~~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
+...+.... ..+.....+.++.+...-.+ .+.+.+. ++. ++.||+||||||++|+.|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~~v~~~---~~~--------~~~~d~lViATGs~p~~p~~ 153 (492)
T 3ic9_A 87 VMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EHTLQVD---DHS--------QVIAKRIVIATGSRPNYPEF 153 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TTEEEET---TTE--------EEEEEEEEECCCEECCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CCEEEEc---CCc--------EEEeCEEEEccCCCCcCCCC
Confidence 101111000 01111223445555444343 3455442 444 89999999999999998886
Q ss_pred CCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 013810 188 HGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (436)
Q Consensus 188 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~ 266 (436)
++.. ..+++. .+. +.+...| ++++|||+|++|+|+|..|++++
T Consensus 154 ~~~~~~~v~t~---~~~----------~~~~~~~----------k~vvViGgG~ig~E~A~~l~~~g------------- 197 (492)
T 3ic9_A 154 LAAAGSRLLTN---DNL----------FELNDLP----------KSVAVFGPGVIGLELGQALSRLG------------- 197 (492)
T ss_dssp HHTTGGGEECH---HHH----------TTCSSCC----------SEEEEESSCHHHHHHHHHHHHTT-------------
T ss_pred CCccCCcEEcH---HHH----------hhhhhcC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 6543 233322 111 1122223 49999999999999999999877
Q ss_pred ccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEc--CC--cEEecceEEEecCCCCc
Q 013810 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILN--DG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 267 ~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (436)
.+|+++++. .+++.+++++.+.+.+.|++. |+++.+. +++++. +. +.+. +| +++++|.|++|+|++|+
T Consensus 198 -~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 198 -VIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp -CEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred -CeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 899999995 577889999999999999988 9999985 888854 33 4443 67 67999999999999999
Q ss_pred -hh--cccCCCCCCCCCcEEeC-CCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc------
Q 013810 337 -TL--VKSLDLPKSPGGRIGID-EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA------ 406 (436)
Q Consensus 337 -~~--~~~~~l~~~~~G~i~vd-~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~------ 406 (436)
.+ ++.++++++++|+|.|| +++| |+.|+|||+|||+.. +++++.|..||+.||.||....
T Consensus 276 ~~~l~l~~~gl~~~~~G~i~vd~~~~~-t~~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 345 (492)
T 3ic9_A 276 VDKLGLENTSIELDKKNSPLFDELTLQ-TSVDHIFVAGDANNT---------LTLLHEAADDGKVAGTNAGAYPVIAQGQ 345 (492)
T ss_dssp CSSSCGGGSCCCBCTTCCBCCCTTTCB-CSSTTEEECGGGGTS---------SCSHHHHHHHHHHHHHHHHHTTSCCEEC
T ss_pred CCCCChhhcCCEECCCCCEeECccccc-CCCCCEEEEEecCCC---------CccHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 45 78889999999999999 8999 899999999999986 7889999999999999998632
Q ss_pred ---CCceeeecchhHHHHHHH
Q 013810 407 ---RNWCWFFDVCSLTSILNR 424 (436)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~~ 424 (436)
.+++.+++.....++++.
T Consensus 346 ~~~~p~~~~~~p~~a~vGlte 366 (492)
T 3ic9_A 346 RRAPLSVVFTEPQVASVGLSL 366 (492)
T ss_dssp CCCCEEEECSSSEEEEEESCH
T ss_pred CCCCcEEEECCCCeEEecCCH
Confidence 234445566665555443
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=302.31 Aligned_cols=345 Identities=14% Similarity=0.106 Sum_probs=221.4
Q ss_pred Ccccccccccccc--ccccCCCCCcc-CCCcccccccccccccCCCCccccccccCCCCCCCCCCCcEEEECCchHHHHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSII-MPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRL 77 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~a 77 (436)
++|+..+.|+|.. .|+..|.+... ..+. ....+..+..+... ...+.....+.....++|+|||||||||+|
T Consensus 63 n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v-~I~~le~~~~~~~~----~~~~~~~~~~~~~~~~~V~IIGgGpAGl~a 137 (456)
T 2vdc_G 63 NNFPEICGRICPQDRLCEGNCVIEQSTHGAV-TIGSVEKYINDTAW----DQGWVKPRTPSRELGLSVGVIGAGPAGLAA 137 (456)
T ss_dssp CSCHHHHHHHCCGGGSGGGGCGGGGSSSCSC-CHHHHHHHHHHHHH----HHTCCCCCCSCSSCCCCEEEECCSHHHHHH
T ss_pred CCCCccccccCCCCcchHHhcccCCCCCCCc-cHHHHHHHHHHHHH----HcCCCCCCCCcCCCCCEEEEECCCHHHHHH
Confidence 4788899999999 99999976654 3322 22222222211100 001111111112346899999999999999
Q ss_pred HHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecC
Q 013810 78 MKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD 157 (436)
Q Consensus 78 A~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~ 157 (436)
|..|++.|++|+|||+.+.+..... + +.+.+. +...+......+....++.++.+..+. ..+.+ .+
T Consensus 138 A~~L~~~G~~V~v~e~~~~~GG~l~-~----gip~~~-~~~~~~~~~~~~l~~~gv~~~~~~~v~-----~~v~~---~~ 203 (456)
T 2vdc_G 138 AEELRAKGYEVHVYDRYDRMGGLLV-Y----GIPGFK-LEKSVVERRVKLLADAGVIYHPNFEVG-----RDASL---PE 203 (456)
T ss_dssp HHHHHHHTCCEEEECSSSSCSTHHH-H----TSCTTT-SCHHHHHHHHHHHHHTTCEEETTCCBT-----TTBCH---HH
T ss_pred HHHHHHCCCeEEEEeccCCCCCeee-e----cCCCcc-CCHHHHHHHHHHHHHCCcEEEeCCEec-----cEEEh---hH
Confidence 9999999999999999876543211 1 111111 111121222223344577777654332 11211 11
Q ss_pred CcccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCC-hhhhcccCcEE
Q 013810 158 ELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGIS-EEEKSRLLHCV 234 (436)
Q Consensus 158 g~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~vv 234 (436)
. .+.||+||||||+. ++.+++||.+ .++++..++....... . .. ...+... ......+++|+
T Consensus 204 ~---------~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~--~---~~-~~~~~~~~g~~~~~gk~Vv 268 (456)
T 2vdc_G 204 L---------RRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKV--S---LG-DTVEAYENGSLNAAGKHVV 268 (456)
T ss_dssp H---------HSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHH--H---CT-TTCSSCCTTCSCCCCSEEE
T ss_pred h---------HhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhh--h---cc-cccccccccccccCCCEEE
Confidence 1 46799999999996 7788999975 3444332222111110 0 00 0000000 00013456999
Q ss_pred EECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-CCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeC
Q 013810 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-LSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDS 311 (436)
Q Consensus 235 ViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~-l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~ 311 (436)
|||+|++|+|+|..+.+.+ ..+|++++|.. . ++..+.+ .+.+++.||+++.+. ++++.+
T Consensus 269 VIGgG~~a~d~A~~~~r~G-------------a~~Vtiv~r~~~~~~p~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~ 330 (456)
T 2vdc_G 269 VLGGGDTAMDCVRTAIRQG-------------ATSVKCLYRRDRKNMPGSQRE-----VAHAEEEGVEFIWQAAPEGFTG 330 (456)
T ss_dssp EECSSHHHHHHHHHHHHTT-------------CSEEEEECSSCSTTCSSCHHH-----HHHHHHTTCEEECCSSSCCEEE
T ss_pred EECCChhHHHHHHHHHHcC-------------CCEEEEEEeCCccCCCCCHHH-----HHHHHHCCCEEEeCCCceEEeC
Confidence 9999999999999988765 14799999964 2 5554433 245677899999884 555543
Q ss_pred Ce----EEEc------------------CC--cEEecceEEEecCCCCch---hcccCCCCCCCCCcEEeCCC-CCCCCC
Q 013810 312 QK----LILN------------------DG--TEVPYGLLVWSTGVGPST---LVKSLDLPKSPGGRIGIDEW-LRVPSV 363 (436)
Q Consensus 312 ~~----v~~~------------------~g--~~i~~D~vi~a~G~~p~~---~~~~~~l~~~~~G~i~vd~~-~~~t~~ 363 (436)
++ |++. +| .++++|.||+|+|+.|++ ++..++++++++|+|.||++ +| |+.
T Consensus 331 ~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~-Ts~ 409 (456)
T 2vdc_G 331 DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKM-TNM 409 (456)
T ss_dssp EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCB-CSS
T ss_pred CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCc-CCC
Confidence 21 2221 23 369999999999999973 67889999999999999998 89 999
Q ss_pred CCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 364 QDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 364 ~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|+|||+|||+.. +.++..|+.||+.||++|..+..
T Consensus 410 ~~VfA~GD~~~g---------~~~v~~A~~~G~~aA~~i~~~L~ 444 (456)
T 2vdc_G 410 DGVFAAGDIVRG---------ASLVVWAIRDGRDAAEGIHAYAK 444 (456)
T ss_dssp TTEEECGGGGSS---------CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeccccCC---------chHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999986 78899999999999999987543
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=288.47 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=198.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCccccc-cc-ccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFR-SV-AEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.++||+|||||+||++||..|++.|++|+|||+.. ..............+... .. ...+...........++.++.+
T Consensus 13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~ 91 (335)
T 2a87_A 13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRME 91 (335)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSS-CSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEe
Confidence 45899999999999999999999999999999752 111100000000000000 00 0112222222334467888888
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhcc
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLM 215 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~ 215 (436)
+|+.++. .+.+.+....++. .+.||+||+|||+.|..|++||.+. ..++. ... ....+
T Consensus 92 ~v~~i~~-~~~~~v~~~~~g~--------~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~--~~~---~~~~~----- 152 (335)
T 2a87_A 92 DVESVSL-HGPLKSVVTADGQ--------THRARAVILAMGAAARYLQVPGEQELLGRGVSS--CAT---CDGFF----- 152 (335)
T ss_dssp CEEEEEC-SSSSEEEEETTSC--------EEEEEEEEECCCEEECCCCCTHHHHTBTTTEES--CHH---HHGGG-----
T ss_pred eEEEEEe-CCcEEEEEeCCCC--------EEEeCEEEECCCCCccCCCCCchHhccCCceEE--eec---cchhh-----
Confidence 8888887 3333331223554 7999999999999999999988642 11111 111 11110
Q ss_pred ccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHH
Q 013810 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLS 295 (436)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~ 295 (436)
..+++|+|||+|.+|+|+|..|++.+ .+|+++++.+.+.. ...+. .+.++
T Consensus 153 ------------~~~~~v~ViG~G~~g~e~a~~l~~~g--------------~~V~l~~~~~~~~~-~~~~~---~~~~~ 202 (335)
T 2a87_A 153 ------------FRDQDIAVIGGGDSAMEEATFLTRFA--------------RSVTLVHRRDEFRA-SKIML---DRARN 202 (335)
T ss_dssp ------------GTTCEEEEECSSHHHHHHHHHHTTTC--------------SEEEEECSSSSCSS-CTTHH---HHHHH
T ss_pred ------------cCCCEEEEECCCHHHHHHHHHHHHhC--------------CeEEEEEcCCcCCc-cHHHH---HHHhc
Confidence 22358999999999999999998765 89999999653321 12221 23456
Q ss_pred hcCCEEEecc-eEEEeCCe----EEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCC
Q 013810 296 KSGVRLVRGI-VKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~ 364 (436)
+.||+++.+. +.+++.+. |.+. +| +++++|.||+|+|++|+ ++++ .+++++++|+|.||++++.|+.|
T Consensus 203 ~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~ 281 (335)
T 2a87_A 203 NDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLP 281 (335)
T ss_dssp CTTEEEECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSST
T ss_pred cCCcEEEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCC
Confidence 7899999984 88887643 7765 45 57999999999999999 5655 57888889999999975339999
Q ss_pred CEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 365 DVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 365 ~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+|||+|||+..+ ++.+..|+.||+.||.+|....
T Consensus 282 ~iya~GD~~~~~--------~~~~~~A~~~g~~aA~~i~~~l 315 (335)
T 2a87_A 282 GVFAAGDLVDRT--------YRQAVTAAGSGCAAAIDAERWL 315 (335)
T ss_dssp TEEECGGGTCCS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEeeecCCcc--------HHHHHHHHHhHHHHHHHHHHHh
Confidence 999999999852 5789999999999999998654
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=288.66 Aligned_cols=294 Identities=16% Similarity=0.146 Sum_probs=202.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcC----CCcceecchhhhhhcCcccccc--cccchhhcchhhhcCCCcEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP----RNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 135 (436)
++||+|||||+||+++|..|++.|++|+|||+ .................+.+.. ....+...........++.+
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~ 87 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 87 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEE
Confidence 47999999999999999999999999999998 2221111000000000000000 00112222222334467888
Q ss_pred EEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc--ccccccChHHHHHHHHHHHHh
Q 013810 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE--NATFLREVHHAQEIRRKLLLN 213 (436)
Q Consensus 136 ~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~--~~~~~~~~~~~~~~~~~~~~~ 213 (436)
+.++|+.++...+.+.+.. ++. .+.||+||+|||+.|..|++||.+. +.+....+.....+...+
T Consensus 88 ~~~~v~~i~~~~~~~~v~~--~~~--------~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--- 154 (333)
T 1vdc_A 88 FTETVTKVDFSSKPFKLFT--DSK--------AILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAA--- 154 (333)
T ss_dssp ECCCCCEEECSSSSEEEEC--SSE--------EEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTS---
T ss_pred EEeEEEEEEEcCCEEEEEE--CCc--------EEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccch---
Confidence 8888999988777665543 454 7999999999999999999998753 112212221111111100
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
....+++|+|||+|.+|+|+|..|.+.+ .+|+++++.+.+.. .+.+ ..+.
T Consensus 155 ------------~~~~~~~v~VvG~G~~g~e~A~~l~~~g--------------~~V~lv~~~~~~~~-~~~~---~~~~ 204 (333)
T 1vdc_A 155 ------------PIFRNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIM---QQRA 204 (333)
T ss_dssp ------------GGGTTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHH---HHHH
T ss_pred ------------hhcCCCeEEEECCChHHHHHHHHHHhcC--------------CeEEEEecCCcCCc-cHHH---HHHH
Confidence 0022358999999999999999998765 89999999654321 2222 2244
Q ss_pred HHhcCCEEEecc-eEEEeCCe-------EEEc---CC--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCC
Q 013810 294 LSKSGVRLVRGI-VKDVDSQK-------LILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~~~-------v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~ 359 (436)
+++.||+++.+. +.+++.+. |.+. +| +++++|.||+|+|++|+ .+++ .+++++++|+|.||++++
T Consensus 205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~ 283 (333)
T 1vdc_A 205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTT 283 (333)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSC
T ss_pred HhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhc
Confidence 567899999984 88886432 7775 45 57999999999999999 4554 578888899999999853
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
.|+.|+|||+|||+..+ ++.+..|+.||+.||.+|.....
T Consensus 284 ~t~~~~vya~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~l~ 323 (333)
T 1vdc_A 284 QTSVPGVFAAGDVQDKK--------YRQAITAAGTGCMAALDAEHYLQ 323 (333)
T ss_dssp BCSSTTEEECGGGGCSS--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeeeccCCC--------chhHHHHHHhHHHHHHHHHHHHH
Confidence 39999999999999852 47899999999999999987653
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.02 Aligned_cols=289 Identities=19% Similarity=0.190 Sum_probs=199.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec------------chhhhhhcCcccccc-----cccchhhcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------------PLLASTCVGTLEFRS-----VAEPIARIQ 124 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~------------~~~~~~~~~~~~~~~-----~~~~~~~~~ 124 (436)
++||+|||||+||+++|..|++.|++|+|||+++.+... +.......+...... ....+..+.
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYL 82 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHH
Confidence 479999999999999999999999999999998764321 000000001000000 001223333
Q ss_pred hhhhcCCCcEEEEe-EeEeEeCCCCEEE-EEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCCCcc---ccccc
Q 013810 125 PAISREPGSYFFLS-HCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVKE---NATFL 197 (436)
Q Consensus 125 ~~~~~~~~~~~~~~-~v~~id~~~~~v~-~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g~~~---~~~~~ 197 (436)
....+..++.++.+ +|+.++.+.+.+. +.. ++. ++.||+||+|||. .|+.|++||... ..++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~--~~g--------~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~ 152 (357)
T 4a9w_A 83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVAR--DGR--------QWLARAVISATGTWGEAYTPEYQGLESFAGIQLHS 152 (357)
T ss_dssp HHHHHHTTCCEECSCCEEEEEEETTEEEEEET--TSC--------EEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEG
T ss_pred HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEe--CCC--------EEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEe
Confidence 33444557777664 8999998877766 542 233 7899999999995 677789998753 12222
Q ss_pred cChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-
Q 013810 198 REVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN- 276 (436)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~- 276 (436)
..+.+... ..+++|+|||+|.+|+|+|..|++.+ +|+++.+.
T Consensus 153 ~~~~~~~~----------------------~~~~~v~VvG~G~~g~e~a~~l~~~~---------------~v~~v~~~~ 195 (357)
T 4a9w_A 153 AHYSTPAP----------------------FAGMRVAIIGGGNSGAQILAEVSTVA---------------ETTWITQHE 195 (357)
T ss_dssp GGCCCSGG----------------------GTTSEEEEECCSHHHHHHHHHHTTTS---------------EEEEECSSC
T ss_pred ccCCChhh----------------------cCCCEEEEECCCcCHHHHHHHHHhhC---------------CEEEEECCC
Confidence 22211111 23359999999999999999998643 59999885
Q ss_pred C-CCCcc--cHHHHHHHHHHHH----------------------------hcCCEEEec-ceEEEeCCeEEEcCCcEEec
Q 013810 277 E-ILSSF--DDRLRHYATTQLS----------------------------KSGVRLVRG-IVKDVDSQKLILNDGTEVPY 324 (436)
Q Consensus 277 ~-~l~~~--~~~~~~~~~~~l~----------------------------~~gV~i~~~-~v~~i~~~~v~~~~g~~i~~ 324 (436)
+ +++.. +..+.+.+.+.+. +.|+ +... .+.+++.+.+.+.+|+++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~~v~~~~g~~i~~ 274 (357)
T 4a9w_A 196 PAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPTGMQWADGTERAF 274 (357)
T ss_dssp CCBCCTTCCTHHHHTC----------------------CBCCCHHHHHHHHTTC-CCEECCCSEEETTEEECTTSCEEEC
T ss_pred CeecchhhcCccHHHHHHHHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeCCeeEECCCCEecC
Confidence 2 33322 2333333222222 3444 3333 47888889999999999999
Q ss_pred ceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCC--CCCCCCCCEEEec--cccccccCCCCccCCccHHHHHHHHHHHH
Q 013810 325 GLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--LRVPSVQDVFAVG--DCSGYLESTGKTVLPALAQVSYEQLHLFQ 399 (436)
Q Consensus 325 D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--~~~t~~~~Vya~G--D~~~~~~~~~~~~~~~~~~~A~~~g~~aa 399 (436)
|+||+|+|++|+ ++++.++++ +++|+|.||++ ++ |+.|||||+| ||+.. .++.+..|+.||+.+|
T Consensus 275 D~vi~a~G~~p~~~~l~~~gl~-~~~G~i~vd~~~l~~-t~~~~vya~Gd~d~~~~--------~~~~~~~A~~~g~~~a 344 (357)
T 4a9w_A 275 DAVIWCTGFRPALSHLKGLDLV-TPQGQVEVDGSGLRA-LAVPSVWLLGYGDWNGM--------ASATLIGVTRYAREAV 344 (357)
T ss_dssp SEEEECCCBCCCCGGGTTTTCB-CTTSCBCBCTTSCBB-SSCTTEEECSSCGGGST--------TCSSTTTHHHHHHHHH
T ss_pred CEEEECCCcCCCCcccCccccc-CCCCCccccCCcccC-CCCCCeEEecccccccc--------chhhhhhhHHHHHHHH
Confidence 999999999999 799999998 88999999999 66 9999999999 56652 1567788999999999
Q ss_pred hhhhhhcCC
Q 013810 400 KPSFLLARN 408 (436)
Q Consensus 400 ~~i~~~~~~ 408 (436)
++|.....+
T Consensus 345 ~~i~~~l~g 353 (357)
T 4a9w_A 345 RQVTAYCAD 353 (357)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHHHHh
Confidence 999887655
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-34 Score=285.62 Aligned_cols=283 Identities=19% Similarity=0.189 Sum_probs=201.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec--chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
..+||+||||||||++||.+|++.|++|+|||+...-.+. ..+.... +... . ....+...........++.++.+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~-~~~~-~-~~~~l~~~l~~~~~~~gv~v~~~ 287 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYI-SVPK-T-EGQKLAGALKAHVSDYDVDVIDS 287 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBT-TBSS-B-CHHHHHHHHHHHHHTSCEEEECS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccC-CCCC-C-CHHHHHHHHHHHHHHcCCEEEcC
Confidence 4589999999999999999999999999999874210000 0000000 0000 0 01122222233345568888887
Q ss_pred -EeEeEeCCC---CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccc---cccccChHHHHHHHHHHH
Q 013810 139 -HCAGIDTDN---HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 139 -~v~~id~~~---~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~ 211 (436)
+|+.++.+. +.+.+.. .+|. .+.||+||+|||+.++.|++||.++. .+......+ .
T Consensus 288 ~~v~~i~~~~~~~~~~~V~~-~~g~--------~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~-----~--- 350 (521)
T 1hyu_A 288 QSASKLVPAATEGGLHQIET-ASGA--------VLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCD-----G--- 350 (521)
T ss_dssp CCEEEEECCSSTTSCEEEEE-TTSC--------EEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCC-----G---
T ss_pred CEEEEEEeccCCCceEEEEE-CCCC--------EEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCc-----h---
Confidence 899997642 2343332 3555 79999999999999999999987421 111111000 0
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~ 291 (436)
....+++|+|||+|++|+|+|..|+..+ .+|+++++.+.+.. + +.+.
T Consensus 351 --------------~~~~~k~V~ViGgG~~g~E~A~~L~~~g--------------~~Vtlv~~~~~l~~-~----~~l~ 397 (521)
T 1hyu_A 351 --------------PLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEMKA-D----QVLQ 397 (521)
T ss_dssp --------------GGGBTSEEEEECCSHHHHHHHHHHHHHB--------------SEEEEECSSSSCCS-C----HHHH
T ss_pred --------------hhcCCCeEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEeCcccCc-C----HHHH
Confidence 0123469999999999999999999876 89999999654321 2 3455
Q ss_pred HHHHh-cCCEEEecc-eEEEeCC-----eEEEcC---Cc--EEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCC
Q 013810 292 TQLSK-SGVRLVRGI-VKDVDSQ-----KLILND---GT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (436)
Q Consensus 292 ~~l~~-~gV~i~~~~-v~~i~~~-----~v~~~~---g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~ 358 (436)
+.+++ .||+++.+. +++++.+ ++.+.+ |+ ++++|.|++++|++|+ +++.. .++++++|+|.||+++
T Consensus 398 ~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~ 476 (521)
T 1hyu_A 398 DKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKC 476 (521)
T ss_dssp HHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTC
T ss_pred HHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCC
Confidence 66777 699999994 8888753 456653 53 6899999999999998 57765 4778889999999999
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
| |+.|+|||+|||+..+ .+.+..|+.||..||.+|..+.
T Consensus 477 ~-ts~p~VfA~GD~~~~~--------~~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 477 E-TSVKGVFAAGDCTTVP--------YKQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp B-CSSTTEEECSTTBCCS--------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCEEEeecccCCC--------cceeeehHHhHHHHHHHHHHHH
Confidence 9 8999999999999863 4789999999999999998654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=275.45 Aligned_cols=289 Identities=13% Similarity=0.153 Sum_probs=199.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCccee------------cchhhhhhcCccccc--------------
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVF------------TPLLASTCVGTLEFR-------------- 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~~------------~~~~~~~~~~~~~~~-------------- 114 (436)
++||+|||||+||+++|..|++.|+ +|+|||+++ ... .+.......+.....
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNE 82 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCC
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccccc
Confidence 4799999999999999999999999 999999986 211 010000000100000
Q ss_pred c--cccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc
Q 013810 115 S--VAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK 191 (436)
Q Consensus 115 ~--~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~ 191 (436)
. ....+......+....++.++.+ +|+.++.+.+.+.+.. .+. .+.||+||+|||+.+. |.+|+
T Consensus 83 ~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~--~~g--------~~~~d~vVlAtG~~~~-p~ip~-- 149 (369)
T 3d1c_A 83 EHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIAT--TTE--------TYHADYIFVATGDYNF-PKKPF-- 149 (369)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEE--SSC--------CEEEEEEEECCCSTTS-BCCCS--
T ss_pred cCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEe--CCC--------EEEeCEEEECCCCCCc-cCCCC--
Confidence 0 00112222222334567787765 7888987755555543 222 6899999999999865 56776
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
+..++...+.+.. . ...++|+|||+|.+|+|+|..|.+.+ .+|+
T Consensus 150 ~~~~~~~~~~~~~-------------~---------~~~~~vvVvG~G~~g~e~a~~l~~~g--------------~~V~ 193 (369)
T 3d1c_A 150 KYGIHYSEIEDFD-------------N---------FNKGQYVVIGGNESGFDAAYQLAKNG--------------SDIA 193 (369)
T ss_dssp SSCEEGGGCSCGG-------------G---------SCSSEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CceechhhcCChh-------------h---------cCCCEEEEECCCcCHHHHHHHHHhcC--------------CeEE
Confidence 3333333222110 0 12358999999999999999999876 8999
Q ss_pred EEeCCC-CCC-------cccHHHHHHHHHHHHhcC-CEEEecc-eEEE--eCC--eEEEcCCcEEe-cceEEEecCCCCc
Q 013810 272 LIEANE-ILS-------SFDDRLRHYATTQLSKSG-VRLVRGI-VKDV--DSQ--KLILNDGTEVP-YGLLVWSTGVGPS 336 (436)
Q Consensus 272 lv~~~~-~l~-------~~~~~~~~~~~~~l~~~g-V~i~~~~-v~~i--~~~--~v~~~~g~~i~-~D~vi~a~G~~p~ 336 (436)
++++.+ +++ .+++...+.+.+.+++.| |+++.+. |.++ +++ .|++.+|+++. +|.||+|+|++|+
T Consensus 194 lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~ 273 (369)
T 3d1c_A 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT 273 (369)
T ss_dssp EECC----------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred EEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence 999954 332 255677788889999997 9999984 8888 444 46778888765 6999999999999
Q ss_pred h-hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 337 T-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 337 ~-~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
. ++.+.+++ +++|++.||++++.|++|+|||+|||+..+... ...+..+.+||+.+|++|....
T Consensus 274 ~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~v~a~GD~~~~~~~~-----~~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 274 KNPIVQQLFV-TTNQDIKLTTHDESTRYPNIFMIGATVENDNAK-----LCYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp GSHHHHHHSC-CTTSCCCBCTTSBBSSSTTEEECSTTCCCSSCC-----CCSHHHHGGGHHHHHHHHHHHT
T ss_pred cchhhhhhcc-CCCCCEEechhhcccCCCCeEEeccccccCCee-----EEEEehhhHHHHHHHHHHhccc
Confidence 4 66554566 778999999875559999999999999864311 1234568889999999998654
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=274.79 Aligned_cols=276 Identities=12% Similarity=0.120 Sum_probs=190.8
Q ss_pred CcEEEECCchHHHHHHHhccc---CCCe---EEEEcCCCcceecchhh------------------hhhcCc----cccc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT---SLYD---VVCVSPRNHMVFTPLLA------------------STCVGT----LEFR 114 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~---~g~~---v~lie~~~~~~~~~~~~------------------~~~~~~----~~~~ 114 (436)
++|+|||||+||++||..|++ .|++ |+|||+++.++...... ...... ..+.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 99999987643221100 000000 0000
Q ss_pred cc---------------ccchhhcchhhhcCCCcE--E-EEeEeEeEeCCCC----EEEEEEecCCcccCCCCceeeecc
Q 013810 115 SV---------------AEPIARIQPAISREPGSY--F-FLSHCAGIDTDNH----VVHCETVTDELRTLEPWKFKISYD 172 (436)
Q Consensus 115 ~~---------------~~~~~~~~~~~~~~~~~~--~-~~~~v~~id~~~~----~v~~~~~~~g~~~~~~~~~~~~~d 172 (436)
+. ...+.++...+.+..++. + ...+|+.++...+ .|.+....+|. ..++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~------~~~~~~d 156 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDT------IYSEEFD 156 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTE------EEEEEES
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCc------eEEEEcC
Confidence 00 011111122222223443 3 3468888876554 34433211231 1278999
Q ss_pred EEEEeCC--CCCCCCCCCCCcc---ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHH
Q 013810 173 KLVIALG--AEASTFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (436)
Q Consensus 173 ~lViAtG--~~~~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~ 247 (436)
+||+||| +.|+.|++||.+. .+++..++.+... ..+++|+|||+|++|+|+|.
T Consensus 157 ~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~----------------------~~~k~VvVVG~G~sg~eiA~ 214 (464)
T 2xve_A 157 YVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALE----------------------FKDKTVLLVGSSYSAEDIGS 214 (464)
T ss_dssp EEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGG----------------------GTTSEEEEECCSTTHHHHHH
T ss_pred EEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhH----------------------cCCCEEEEEcCCCCHHHHHH
Confidence 9999999 7899999999753 2344433322111 23459999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeCCeEEEcCCcEEecce
Q 013810 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGL 326 (436)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~ 326 (436)
+|++.+ .+|+++++. .+++..- ..||+++ ..|+++++++|++.||+++++|.
T Consensus 215 ~l~~~g--------------~~V~li~~~~~~~~~~~------------~~~V~~~-~~V~~i~~~~V~~~dG~~i~~D~ 267 (464)
T 2xve_A 215 QCYKYG--------------AKKLISCYRTAPMGYKW------------PENWDER-PNLVRVDTENAYFADGSSEKVDA 267 (464)
T ss_dssp HHHHTT--------------CSEEEEECSSCCCCCCC------------CTTEEEC-SCEEEECSSEEEETTSCEEECSE
T ss_pred HHHHhC--------------CeEEEEEECCCCCCCCC------------CCceEEc-CCeEEEeCCEEEECCCCEEeCCE
Confidence 999877 899999985 3443210 2478887 56899988999999999999999
Q ss_pred EEEecCCCCc-hhccc-CCCCCCCCCcEEeCCC---CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhh
Q 013810 327 LVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDEW---LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKP 401 (436)
Q Consensus 327 vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~~---~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 401 (436)
||+|+|++|+ +++.. ++++++++|++ ++.+ ++ |+.|+|||+|||+.. ..+..|..||+.+|++
T Consensus 268 Vi~atG~~p~~~~l~~~~gl~~~~~~~v-~~~~~~~~~-t~~p~i~aiGd~~~~----------~~~~~a~~qa~~~a~~ 335 (464)
T 2xve_A 268 IILCTGYIHHFPFLNDDLRLVTNNRLWP-LNLYKGVVW-EDNPKFFYIGMQDQW----------YSFNMFDAQAWYARDV 335 (464)
T ss_dssp EEECCCBCCCCTTBCTTTCCCCCSSSCC-SSEETTTEE-SSSTTEEECSCSCCS----------SCHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCcCcccccccCCCccc-ccccceEec-CCCCCEEEEeCcccc----------cchHHHHHHHHHHHHH
Confidence 9999999999 67765 67887766666 3433 45 899999999999873 4688999999999999
Q ss_pred hhhh
Q 013810 402 SFLL 405 (436)
Q Consensus 402 i~~~ 405 (436)
|...
T Consensus 336 l~G~ 339 (464)
T 2xve_A 336 IMGR 339 (464)
T ss_dssp HTTS
T ss_pred HcCC
Confidence 9754
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=303.69 Aligned_cols=345 Identities=12% Similarity=0.061 Sum_probs=219.0
Q ss_pred Ccccccccccccc--ccccCCCCCccCCCcccccccccccccCC----CCccccccccCCCCCCCCCCCcEEEECCchHH
Q 013810 1 MSLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDAS----PSTVQLTQYSGLGPTKANEKPRVVVLGSGWAG 74 (436)
Q Consensus 1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~AG 74 (436)
++|...+.|.|.. .|+..|.+............+.++..+.. ......+........+....+||+||||||||
T Consensus 120 n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGgGpAG 199 (1025)
T 1gte_A 120 NPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPAS 199 (1025)
T ss_dssp CTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECCSHHH
T ss_pred CChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECccHHH
Confidence 4788888999987 88888876543222223333333333210 00000000000000011235799999999999
Q ss_pred HHHHHhcccCCC-eEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEE
Q 013810 75 CRLMKGIDTSLY-DVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCE 153 (436)
Q Consensus 75 l~aA~~L~~~g~-~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~ 153 (436)
++||.+|++.|+ +|+|||+++.+.+.. .+ +.+.+. ....+.+....+....++.++.+..... +.+.+
T Consensus 200 l~aA~~L~~~G~~~Vtv~E~~~~~GG~~-~~----~ip~~~-~~~~~~~~~~~~~~~~gv~~~~~~~v~~----~~v~~- 268 (1025)
T 1gte_A 200 ISCASFLARLGYSDITIFEKQEYVGGLS-TS----EIPQFR-LPYDVVNFEIELMKDLGVKIICGKSLSE----NEITL- 268 (1025)
T ss_dssp HHHHHHHHHTTCCCEEEEESSSSCSTHH-HH----TSCTTT-SCHHHHHHHHHHHHTTTCEEEESCCBST----TSBCH-
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCccc-cc----cCCccc-CCHHHHHHHHHHHHHCCcEEEcccEecc----ceEEh-
Confidence 999999999999 799999987654321 11 111111 1111112222334557888887755421 22322
Q ss_pred EecCCcccCCCCceeeeccEEEEeCCC-CCCCCCC-CCCc--cccccccChHHHHHHHHHHHH---hccccCCCCCChhh
Q 013810 154 TVTDELRTLEPWKFKISYDKLVIALGA-EASTFGI-HGVK--ENATFLREVHHAQEIRRKLLL---NLMLSDVPGISEEE 226 (436)
Q Consensus 154 ~~~~g~~~~~~~~~~~~~d~lViAtG~-~~~~~~i-~g~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~p~~~~~~ 226 (436)
.++. .+.||+||||||+ .|+.+++ +|.+ .++++..++. ...+.... +......+
T Consensus 269 --~~~~--------~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L---~~~~~~~~~~~~~~~~~~~------ 329 (1025)
T 1gte_A 269 --NTLK--------EEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFL---PLVAKSSKAGMCACHSPLP------ 329 (1025)
T ss_dssp --HHHH--------HTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHH---HHHHHHHCBTTBSCCCCCC------
T ss_pred --hhcC--------ccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHH---HHHHhhccccccccccccc------
Confidence 1232 5789999999999 5887664 4653 3444333222 11111000 00000111
Q ss_pred hcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CCCcccHHHHHHHHHHHHhcCCEEEec
Q 013810 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG 304 (436)
Q Consensus 227 ~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l~~~~~~~~~~~~~~l~~~gV~i~~~ 304 (436)
..+++|+|||||++|+|+|..+.+++ ..+|+++++.+ .++.+++++ +.+++.||+++.+
T Consensus 330 -~~~~~VvVIGgG~~g~e~A~~~~~~G-------------~~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~Gv~~~~~ 390 (1025)
T 1gte_A 330 -SIRGAVIVLGAGDTAFDCATSALRCG-------------ARRVFLVFRKGFVNIRAVPEEV-----ELAKEEKCEFLPF 390 (1025)
T ss_dssp -CCCSEEEEECSSHHHHHHHHHHHHTT-------------CSEEEEECSSCGGGCCSCHHHH-----HHHHHTTCEEECS
T ss_pred -ccCCcEEEECCChHHHHHHHHHHHcC-------------CCEEEEEEecChhhCCCCHHHH-----HHHHHcCCEEEeC
Confidence 12348999999999999999998876 14999999953 566666554 3567789999987
Q ss_pred c-eEEEeC--Ce---EEEc------CC---------cEEecceEEEecCCCCc--hhccc-CCCCCCCCCcEEeCC-CCC
Q 013810 305 I-VKDVDS--QK---LILN------DG---------TEVPYGLLVWSTGVGPS--TLVKS-LDLPKSPGGRIGIDE-WLR 359 (436)
Q Consensus 305 ~-v~~i~~--~~---v~~~------~g---------~~i~~D~vi~a~G~~p~--~~~~~-~~l~~~~~G~i~vd~-~~~ 359 (436)
. +.++.. +. |++. +| .++++|.||+|+|++|+ .++.+ .|++++++|+|.||+ ++|
T Consensus 391 ~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~ 470 (1025)
T 1gte_A 391 LSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQ 470 (1025)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCB
T ss_pred CCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCc
Confidence 4 666642 32 3332 22 36899999999999864 46666 489999999999997 799
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|+.|+|||+|||+.. +.++..|+.||+.||++|..
T Consensus 471 -Ts~~~VfA~GD~~~~---------~~~~~~A~~~G~~aA~~i~~ 505 (1025)
T 1gte_A 471 -TSEPWVFAGGDIVGM---------ANTTVESVNDGKQASWYIHK 505 (1025)
T ss_dssp -CSSTTEEECSGGGCS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCEEEeCCCCCC---------chHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 77899999999999999975
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=274.99 Aligned_cols=299 Identities=13% Similarity=0.086 Sum_probs=195.4
Q ss_pred CCcEEEECCchHHHHHHHhccc-C------CCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-S------LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~------g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (436)
.++|+||||||||++||..|++ . |++|+|||+.+.++... .++...+..... .+...........++.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~-~~gv~p~~~~~~----~~~~~~~~~~~~~~v~ 77 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-RSGVAPDHPKIK----SISKQFEKTAEDPRFR 77 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-HHTSCTTCTGGG----GGHHHHHHHHTSTTEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcc-ccccCCCCCCHH----HHHHHHHHHHhcCCCE
Confidence 4799999999999999999999 7 99999999987754322 222222222222 2222222334556788
Q ss_pred EEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC-CCCCCCCCCc-cccccccChHHHHHHHHHHHH
Q 013810 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLL 212 (436)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~-~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~ 212 (436)
++.+ + .++ +.+.+ .++ .+.||+||||||+. ++.+++||.+ .++++..++ ...+..
T Consensus 78 ~~~~-v-~v~---~~v~~---~~~---------~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~------~~~~~~ 134 (456)
T 1lqt_A 78 FFGN-V-VVG---EHVQP---GEL---------SERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDF------VGWYNA 134 (456)
T ss_dssp EEES-C-CBT---TTBCH---HHH---------HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHH------HHHHTT
T ss_pred EEee-E-EEC---CEEEE---CCC---------eEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHH------Hhhhhc
Confidence 8765 2 131 22322 122 57899999999997 7888999975 333433222 221111
Q ss_pred hccc-cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHH--------HHHhhhcCCCCccEEEEEeCC-CCCCcc
Q 013810 213 NLML-SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR--------DVRQRYSHVKDYIHVTLIEAN-EILSSF 282 (436)
Q Consensus 213 ~~~~-~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~--------~~~~~~~~~~~~~~V~lv~~~-~~l~~~ 282 (436)
.... ...+. ..+++|+|||+|++|+|+|..|+..... ...+.... ....+|+++.|. ++...+
T Consensus 135 ~~d~~~~~~~------~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~-~g~~~V~lv~r~~~~~~~f 207 (456)
T 1lqt_A 135 HPHFEQVSPD------LSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRP-RGIQEVVIVGRRGPLQAAF 207 (456)
T ss_dssp CGGGTTCCCC------CCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTT-CCCCEEEEECSSCGGGCCC
T ss_pred Ccccccchhh------cCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHH-CCCcEEEEEecCChhhhcc
Confidence 1001 11111 1346999999999999999999874310 00111111 012599999985 333222
Q ss_pred c-------------------HHH------------------HHHHHHHHHh------cCCEEEecc-eEEEeCC----eE
Q 013810 283 D-------------------DRL------------------RHYATTQLSK------SGVRLVRGI-VKDVDSQ----KL 314 (436)
Q Consensus 283 ~-------------------~~~------------------~~~~~~~l~~------~gV~i~~~~-v~~i~~~----~v 314 (436)
. +++ .+.+.+.+.+ +||+++++. +.++.++ .|
T Consensus 208 ~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v 287 (456)
T 1lqt_A 208 TTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERI 287 (456)
T ss_dssp CHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEE
T ss_pred ChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEE
Confidence 1 111 2344455555 789999984 8888653 36
Q ss_pred EEc----------------CC--cEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccc
Q 013810 315 ILN----------------DG--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376 (436)
Q Consensus 315 ~~~----------------~g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~ 376 (436)
++. +| ++++||+||+++|++|+++ .+++++++|+|.+|+++|+|+.|+|||+|||+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp 364 (456)
T 1lqt_A 288 VLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVPT---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP 364 (456)
T ss_dssp EEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCCC---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCS
T ss_pred EEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCCC---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCC
Confidence 554 34 4699999999999999974 46777888999999999988999999999999752
Q ss_pred cCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 377 ESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 377 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
...+..|+.+|..+|.+|....
T Consensus 365 --------~~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 365 --------TGVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp --------CSCTTHHHHHHHHHHHHHHHHH
T ss_pred --------chhHHHHHHHHHHHHHHHHHHH
Confidence 2346689999999999998653
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=272.78 Aligned_cols=298 Identities=14% Similarity=0.089 Sum_probs=190.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
.++|+||||||||++||..|++.| ++|+|||+++.++.. ...+........ ..+......+....++.++.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~-~~~g~~p~~~~~----~~~~~~~~~~~~~~gv~~~~~~ 80 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGL-VRFGVAPDHPEV----KNVINTFTQTARSDRCAFYGNV 80 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTH-HHHTSCTTCGGG----GGHHHHHHHHHTSTTEEEEBSC
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCce-eecccCCCCccH----HHHHHHHHHHHHhCCcEEEeee
Confidence 479999999999999999999988 999999998875322 111111111111 1222222334456678877653
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC-CCCCCCCCc-cccccccChHHHHHHHHHHHHhcccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~-~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
.. .+.+.+. + . .+.||+||||||+.+ +.|++||.+ .++++..++ ..+.+. .....
T Consensus 81 ~v-----~~~V~~~---~-~--------~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~---~~~~~~---~~d~~ 137 (460)
T 1cjc_A 81 EV-----GRDVTVQ---E-L--------QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAF---VGWYNG---LPENR 137 (460)
T ss_dssp CB-----TTTBCHH---H-H--------HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHH---HHHHTT---CGGGT
T ss_pred EE-----eeEEEec---c-c--------eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHH---HHHhhc---Ccccc
Confidence 22 1222221 1 1 578999999999995 778999975 344443322 111110 00011
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH--------HHHHhhhcCCCCc-cEEEEEeCCC-C---------
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM--------RDVRQRYSHVKDY-IHVTLIEANE-I--------- 278 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~--------~~~~~~~~~~~~~-~~V~lv~~~~-~--------- 278 (436)
..+. .-.+++|+|||+|++|+|+|..|+.... ........ +.+ .+|+++.|.. .
T Consensus 138 ~~~~-----~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~--~~g~~~V~lv~r~~~~~~~ft~~el 210 (460)
T 1cjc_A 138 ELAP-----DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALR--QSRVKTVWIVGRRGPLQVAFTIKEL 210 (460)
T ss_dssp TCCC-----CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHH--TCCCCEEEEECSSCGGGCCCCHHHH
T ss_pred cccc-----CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHh--hCCCcEEEEEEcCChHhhccCHHHH
Confidence 1110 0124699999999999999999983110 00000000 112 4899999853 2
Q ss_pred -----CCcc-------------------cHH---HHHHHHHHHHh--------------cCCEEEecc-eEEEeCC----
Q 013810 279 -----LSSF-------------------DDR---LRHYATTQLSK--------------SGVRLVRGI-VKDVDSQ---- 312 (436)
Q Consensus 279 -----l~~~-------------------~~~---~~~~~~~~l~~--------------~gV~i~~~~-v~~i~~~---- 312 (436)
++.. +.. +.+.+.+.+.+ .||++++++ +.++..+
T Consensus 211 ~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 290 (460)
T 1cjc_A 211 REMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGR 290 (460)
T ss_dssp HHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSS
T ss_pred HHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCc
Confidence 1211 000 22334444544 889999984 7777542
Q ss_pred ---eEEEc---------------CC--cEEecceEEEecCCCCchhcccCCC-CCCCCCcEEeCCCCCCCC-CCCEEEec
Q 013810 313 ---KLILN---------------DG--TEVPYGLLVWSTGVGPSTLVKSLDL-PKSPGGRIGIDEWLRVPS-VQDVFAVG 370 (436)
Q Consensus 313 ---~v~~~---------------~g--~~i~~D~vi~a~G~~p~~~~~~~~l-~~~~~G~i~vd~~~~~t~-~~~Vya~G 370 (436)
.|++. +| ++++||+||+++|++|+++ .++ +++++|+|.||+++| |+ .|+|||+|
T Consensus 291 ~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~l---~gl~~~d~~g~i~vn~~~r-t~~~p~vya~G 366 (460)
T 1cjc_A 291 RAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPI---DPSVPFDPKLGVVPNMEGR-VVDVPGLYCSG 366 (460)
T ss_dssp SEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCCC---CTTSCCBTTTTBCCEETTE-ETTCTTEEECT
T ss_pred eEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCCC---CCCcccccCCCeeECCCCc-CcCCCCEEEEE
Confidence 24443 34 5799999999999999974 577 888888999999999 66 79999999
Q ss_pred cccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 371 DCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 371 D~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
||+..+ ...+..|+.+|+.+|.+|....
T Consensus 367 d~~~g~--------~~~i~~a~~~g~~aa~~i~~~l 394 (460)
T 1cjc_A 367 WVKRGP--------TGVITTTMTDSFLTGQILLQDL 394 (460)
T ss_dssp HHHHCT--------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCcCC--------CccHHHHHHHHHHHHHHHHHHH
Confidence 999752 2357789999999999998654
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=263.30 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=185.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceecchhhhhh----------------------------cCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTPLLASTC----------------------------VGT 110 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~~~~~~~~----------------------------~~~ 110 (436)
..++|+|||||+||+++|..|++.|. +|+|||+++............ ...
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 45899999999999999999999999 999999986542110000000 000
Q ss_pred c------------ccccc-----------ccchhhcchhhhcCCCcEE-EEeEeEeEeCCCCEEEEEEec--CCcccCCC
Q 013810 111 L------------EFRSV-----------AEPIARIQPAISREPGSYF-FLSHCAGIDTDNHVVHCETVT--DELRTLEP 164 (436)
Q Consensus 111 ~------------~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~v~~id~~~~~v~~~~~~--~g~~~~~~ 164 (436)
. .+.+. ...+.++...+....+..+ ...+|+.++...+.+.+.... +|..
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~---- 160 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP---- 160 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCC----
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCe----
Confidence 0 00000 0011111122222222233 346888888766655443322 1310
Q ss_pred CceeeeccEEEEeCCC--CCCCCCCCCCcc-------ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEE
Q 013810 165 WKFKISYDKLVIALGA--EASTFGIHGVKE-------NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (436)
Q Consensus 165 ~~~~~~~d~lViAtG~--~~~~~~i~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvV 235 (436)
..++.||+||+|||+ .|+.|++||.+. .+++..++.+... ..+++|+|
T Consensus 161 -~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~----------------------~~~k~VvV 217 (447)
T 2gv8_A 161 -ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPEL----------------------FVGESVLV 217 (447)
T ss_dssp -EEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGG----------------------GTTCCEEE
T ss_pred -eEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhh----------------------cCCCEEEE
Confidence 115899999999998 788899999742 2344333322211 23359999
Q ss_pred ECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe--CC
Q 013810 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD--SQ 312 (436)
Q Consensus 236 iG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~--~~ 312 (436)
||+|++|+|+|..|++.+ .+ |+++++...+ +...||++. ..|++++ +.
T Consensus 218 vG~G~sg~e~A~~l~~~~--------------~~~V~l~~r~~~~--------------l~~~~i~~~-~~v~~~~~~~~ 268 (447)
T 2gv8_A 218 VGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGD--------------IQNESLQQV-PEITKFDPTTR 268 (447)
T ss_dssp ECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCS--------------CBCSSEEEE-CCEEEEETTTT
T ss_pred EccCcCHHHHHHHHHHHh--------------CCcEEEEeCCCCc--------------CCCCCeEEe-cCeEEEecCCC
Confidence 999999999999998766 77 9999996432 445677743 3588884 46
Q ss_pred eEEEcCCcE-EecceEEEecCCCCc-hh-----cccCCCCCCCCCcEEeCCCCCC--CCCCCEEEeccccccccCCCCcc
Q 013810 313 KLILNDGTE-VPYGLLVWSTGVGPS-TL-----VKSLDLPKSPGGRIGIDEWLRV--PSVQDVFAVGDCSGYLESTGKTV 383 (436)
Q Consensus 313 ~v~~~~g~~-i~~D~vi~a~G~~p~-~~-----~~~~~l~~~~~G~i~vd~~~~~--t~~~~Vya~GD~~~~~~~~~~~~ 383 (436)
.|++.||++ +++|.||+|+|++|+ ++ ++.++..+..++.+.++.+.++ +++|+||++||+...
T Consensus 269 ~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-------- 340 (447)
T 2gv8_A 269 EIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-------- 340 (447)
T ss_dssp EEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS--------
T ss_pred EEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc--------
Confidence 899999987 799999999999999 67 6655322333455666655443 789999999999874
Q ss_pred CCccHHHHHHHHHHHHhhhhhh
Q 013810 384 LPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 384 ~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
..+..|..||+.+|++|...
T Consensus 341 --~~~~~a~~qa~~~a~~~~g~ 360 (447)
T 2gv8_A 341 --VPFPTSQAQAAFLARVWSGR 360 (447)
T ss_dssp --CHHHHHHHHHHHHHHHHTTS
T ss_pred --cCchHHHHHHHHHHHHHcCC
Confidence 47889999999999999753
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=284.16 Aligned_cols=284 Identities=16% Similarity=0.164 Sum_probs=195.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhc-CcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCV-GTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
++|||||||||||++||.+|++.|++|+|||+++.+..+.. . +. ..................+....++.++.+ +
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~-~--~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL-D--TAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG-G--SSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec-c--CCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 47899999999999999999999999999999877653322 1 10 001100011111222222334457777664 7
Q ss_pred eEeEeCCCCEEEEEEecCCcccCC-------CCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLE-------PWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLL 211 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~-------~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~ 211 (436)
|.+++.......+....+. .... .....+.||+||||||+.|+.|++||.+ +++++..++.+ +.+.
T Consensus 205 V~~i~~~~~~~~v~~~~~~-~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~---~l~~-- 278 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTVH-LDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRS---YLNR-- 278 (965)
T ss_dssp EEEEETTTEEEEEEECSTT-CSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHH---HHHT--
T ss_pred EEeeecCCceeeeEeeccc-ccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHH---HHHh--
Confidence 8888865543333211110 0000 0012689999999999999999999986 44554433222 1110
Q ss_pred HhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH
Q 013810 212 LNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291 (436)
Q Consensus 212 ~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~ 291 (436)
... ..+++|+|||+|++|+|+|..|.+.+ .+|+++++.+.+. +. .
T Consensus 279 ----~~~---------~~gk~vvViGgG~~g~E~A~~L~~~G--------------~~Vtvv~~~~~~~---~~-----~ 323 (965)
T 2gag_A 279 ----YGV---------RAGARIAVATTNDSAYELVRELAATG--------------GVVAVIDARSSIS---AA-----A 323 (965)
T ss_dssp ----TCE---------ESCSSEEEEESSTTHHHHHHHHGGGT--------------CCSEEEESCSSCC---HH-----H
T ss_pred ----cCC---------CCCCeEEEEcCCHHHHHHHHHHHHcC--------------CcEEEEECCCccc---hh-----H
Confidence 011 22358999999999999999999876 7899999864332 12 4
Q ss_pred HHHHhcCCEEEecc-eEEEeC--C----eEEEcC-------C--cEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEe
Q 013810 292 TQLSKSGVRLVRGI-VKDVDS--Q----KLILND-------G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGI 354 (436)
Q Consensus 292 ~~l~~~gV~i~~~~-v~~i~~--~----~v~~~~-------g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~v 354 (436)
+.+++.||+++.+. +.+++. + .|++.+ | ++++||.|++++|++|+ .++... +|.|.+
T Consensus 324 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~------~g~i~v 397 (965)
T 2gag_A 324 AQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR------QGKLDW 397 (965)
T ss_dssp HHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT------TCCEEE
T ss_pred HHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC------CCcEEE
Confidence 56888999999995 888865 2 566664 5 57999999999999999 465543 467999
Q ss_pred CCCCC----CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 355 DEWLR----VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 355 d~~~~----~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|++++ .|+.|+|||+|||++. +. ...|..||+.||.+|...
T Consensus 398 d~~~~~~v~~ts~p~IyAaGD~a~~---------~~-l~~A~~~G~~aA~~i~~~ 442 (965)
T 2gag_A 398 DTTIHAFVPADAVANQHLAGAMTGR---------LD-TASALSTGAATGAAAATA 442 (965)
T ss_dssp ETTTTEEEECSCCTTEEECGGGGTC---------CS-HHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccCCCCCCEEEEEecCCc---------hh-HHHHHHHHHHHHHHHHHH
Confidence 98876 3799999999999985 33 448999999999999764
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=278.11 Aligned_cols=266 Identities=15% Similarity=0.103 Sum_probs=187.9
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
..++||+|||||+|||+||..|++.|++|+|||+++.+.+.........+......+. ..+...+....++.++.++
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~---~~~~~~~~~~~gv~~~~~~ 465 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVK---EYREAVLAELPNVEIYRES 465 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHH---HHHHHHHHTCTTEEEESSC
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHH---HHHHHHHHHcCCCEEEECC
Confidence 4568999999999999999999999999999999887665543332333322222211 1111212222256655432
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC--------CCCCCCCCCcc-ccccccChHHHHHHHHHH
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--------ASTFGIHGVKE-NATFLREVHHAQEIRRKL 210 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~--------~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~ 210 (436)
. +. ..++. ++.||+||+|||+. |..|++||.+. .+++. .+... .
T Consensus 466 ~---------v~---~~~~~--------~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~~l~--~-- 518 (690)
T 3k30_A 466 P---------MT---GDDIV--------EFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DDLFA--G-- 518 (690)
T ss_dssp C---------CC---HHHHH--------HTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HHHHT--T--
T ss_pred e---------ec---HHHHh--------hcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HHHhC--C--
Confidence 1 11 11222 68899999999998 44678888752 33322 22111 0
Q ss_pred HHhccccCCCCCChhhhcccCcEEEEC--CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCccc-HHH
Q 013810 211 LLNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSSFD-DRL 286 (436)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvViG--~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~~~-~~~ 286 (436)
.. ..+++|+||| +|.+|+|+|..|++.+ .+|+++++.+ +++... +..
T Consensus 519 -------~~--------~~g~~VvViG~ggG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~l~~~~~~~~~ 569 (690)
T 3k30_A 519 -------RL--------PDGKKVVVYDDDHYYLGGVVAELLAQKG--------------YEVSIVTPGAQVSSWTNNTFE 569 (690)
T ss_dssp -------CC--------CSSSEEEEEECSCSSHHHHHHHHHHHTT--------------CEEEEEESSSSTTGGGGGGTC
T ss_pred -------CC--------CCCCEEEEEcCCCCccHHHHHHHHHhCC--------------CeeEEEecccccccccccchh
Confidence 11 2335799999 9999999999999876 8999999964 444332 455
Q ss_pred HHHHHHHHHhcCCEEEecc-eEEEeCCeEEEc-----CCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCC
Q 013810 287 RHYATTQLSKSGVRLVRGI-VKDVDSQKLILN-----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (436)
Q Consensus 287 ~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~-----~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~ 359 (436)
...+.+.+++.||++++++ |++++.+++.+. +++++++|.||+|+|++|+ .++..++. .+. +
T Consensus 570 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~----~~~-------~ 638 (690)
T 3k30_A 570 VNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLDLVA----RRD-------A 638 (690)
T ss_dssp HHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH----HHH-------H
T ss_pred HHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh----hhc-------c
Confidence 6778889999999999995 999998876553 4567999999999999999 45554331 111 5
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|+.|+|||+|||+. ++.+..|+.||+.||.||....
T Consensus 639 -t~~~~VyaiGD~~~----------~~~~~~A~~~g~~aa~~i~~~l 674 (690)
T 3k30_A 639 -GEIASVRGIGDAWA----------PGTIAAAVWSGRRAAEEFDAVL 674 (690)
T ss_dssp -TSCSEEEECGGGTS----------CBCHHHHHHHHHHHHHHTTCCC
T ss_pred -cCCCCEEEEeCCCc----------hhhHHHHHHHHHHHHHHHHhhc
Confidence 89999999999998 5677789999999999998764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-31 Score=277.72 Aligned_cols=271 Identities=16% Similarity=0.162 Sum_probs=183.7
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhh--cCCCcEEEE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS--REPGSYFFL 137 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 137 (436)
...++|+|||||||||+||..|++.|++|+|||+++.+...........+...+......+......+. ...++
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v---- 462 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQ---- 462 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCE----
T ss_pred cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCce----
Confidence 346899999999999999999999999999999988754432221111122111111111111111110 00122
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC--------CCCCCCCCCcc---ccccccChHHHHHH
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--------ASTFGIHGVKE---NATFLREVHHAQEI 206 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~--------~~~~~i~g~~~---~~~~~~~~~~~~~~ 206 (436)
.++. +..+.+ .++. .+.||+||||||+. |..|++||.++ ++++ ..+...
T Consensus 463 ----~i~~-~~~v~~---~~~~--------~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~---~~~~l~- 522 (729)
T 1o94_A 463 ----LALG-QKPMTA---DDVL--------QYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLT---PEQVMD- 522 (729)
T ss_dssp ----EECS-CCCCCH---HHHH--------TSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEEC---HHHHHH-
T ss_pred ----EEEe-CeEEeh---hhcc--------ccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEE---HHHHhc-
Confidence 2222 122221 1232 68899999999998 45678898752 3333 222211
Q ss_pred HHHHHHhccccCCCCCChhhhcccCcEEEEC--CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--cc
Q 013810 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVG--GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--SF 282 (436)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG--~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~--~~ 282 (436)
. .. ..+++|+||| +|++|+|+|..|++++ .+|+++++.++++ .+
T Consensus 523 -~---------~~--------~~gk~VvVIG~GgG~~g~e~A~~l~~~G--------------~~Vtlv~~~~l~~~~~~ 570 (729)
T 1o94_A 523 -G---------KK--------KIGKRVVILNADTYFMAPSLAEKLATAG--------------HEVTIVSGVHLANYMHF 570 (729)
T ss_dssp -C---------CS--------CCCSEEEEEECCCSSHHHHHHHHHHHTT--------------CEEEEEESSCTTHHHHH
T ss_pred -C---------CC--------CCCCeEEEEcCCCCchHHHHHHHHHHcC--------------CEEEEEecccccccccc
Confidence 0 00 2345899999 9999999999999876 8999999966332 12
Q ss_pred cHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEc----CC-cE------------------EecceEEEecCCCCc-h
Q 013810 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILN----DG-TE------------------VPYGLLVWSTGVGPS-T 337 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~----~g-~~------------------i~~D~vi~a~G~~p~-~ 337 (436)
+.. ...+.+.|++.||+++.+. +.+++.+++.+. ++ ++ +++|.||+|+|++|+ .
T Consensus 571 ~~~-~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~ 649 (729)
T 1o94_A 571 TLE-YPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECT 649 (729)
T ss_dssp TTC-HHHHHHHHHHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCH
T ss_pred ccc-HHHHHHHHHhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChH
Confidence 222 4567788899999999995 999988776542 33 33 999999999999999 5
Q ss_pred hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 338 ~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++..++. .+|+++| |+.|+|||+|||+. ++.+..|+.||+.||.+|....
T Consensus 650 l~~~l~~--------~vd~~~~-t~~~~VyAiGD~~~----------~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 650 LWNELKA--------RESEWAE-NDIKGIYLIGDAEA----------PRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp HHHHHHH--------TGGGTGG-GTCCEEEECGGGTS----------CCCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHhh--------hcccccc-cCCCCeEEEeCccc----------hhhHHHHHHHHHHHHHHhhhhc
Confidence 6554421 3688889 89999999999997 5678899999999999998653
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=263.36 Aligned_cols=256 Identities=16% Similarity=0.163 Sum_probs=184.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh-hhcCcccccccccchhhcchhhhcCCCcEEEE-eE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS-TCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (436)
++||+|||||+||++||.+|++. ++|+|||+++++.+...... ...+... ........+...+ ..++.++. .+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~--~~~~~~~~l~~~l--~~~v~~~~~~~ 182 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNK--DSRKVVEELVGKL--NENTKIYLETS 182 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTE--EHHHHHHHHHHTC--CTTEEEETTEE
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCC--CHHHHHHHHHHHH--hcCCEEEcCCE
Confidence 46899999999999999999999 99999999987655422110 0111110 1111111112222 45676544 57
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
|..++.+.+.+.+....++. ...+.||+||+|||+.|+.|++||.+ +++++.. ++..+.+. ...
T Consensus 183 v~~i~~~~~~~~~~~~~~~~------~~~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~---~~~~~~~~------~~~ 247 (493)
T 1y56_A 183 ALGVFDKGEYFLVPVVRGDK------LIEILAKRVVLATGAIDSTMLFENNDMPGVFRRD---FALEVMNV------WEV 247 (493)
T ss_dssp ECCCEECSSSEEEEEEETTE------EEEEEESCEEECCCEEECCCCCTTTTSTTEEEHH---HHHHHHHT------SCB
T ss_pred EEEEEcCCcEEEEEEecCCe------EEEEECCEEEECCCCCccCCCCCCCCCCCEEEcH---HHHHHHHh------ccc
Confidence 88888877665554322332 12689999999999999999999986 4454432 22222221 011
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcC
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~g 298 (436)
..+++++|||+|++|+| +.+++.|
T Consensus 248 ---------~~~~~vvViGgG~~gle-----------------------------------------------~~l~~~G 271 (493)
T 1y56_A 248 ---------APGRKVAVTGSKADEVI-----------------------------------------------QELERWG 271 (493)
T ss_dssp ---------CSCSEEEEESTTHHHHH-----------------------------------------------HHHHHHT
T ss_pred ---------CCCCEEEEECCCHHHHH-----------------------------------------------HHHHhCC
Confidence 22358999999999876 3456679
Q ss_pred CEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCC--CCCCcEE-eCCCCCCCCCCCEEEe
Q 013810 299 VRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPK--SPGGRIG-IDEWLRVPSVQDVFAV 369 (436)
Q Consensus 299 V~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~--~~~G~i~-vd~~~~~t~~~~Vya~ 369 (436)
|+++.+. |.+++.+ .+++.+|+++++|.||+++|++|+ ++++.+++++ +++|+|. ||++++ +.|+|||+
T Consensus 272 V~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~--s~~~vya~ 349 (493)
T 1y56_A 272 IDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR--IKDGIYVA 349 (493)
T ss_dssp CEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE--EETTEEEC
T ss_pred cEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC--cCCCEEEE
Confidence 9999985 8888753 367888999999999999999999 5888888765 5688887 899998 89999999
Q ss_pred ccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 370 GDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 370 GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
|||+. ...+..|..||+.||.+|...
T Consensus 350 GD~~~----------~~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 350 GSAVS----------IKPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp STTTC----------CCCHHHHHHHHHHHHHHHHHH
T ss_pred eccCC----------ccCHHHHHHHHHHHHHHHHHH
Confidence 99998 457889999999999999764
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=259.28 Aligned_cols=305 Identities=12% Similarity=0.092 Sum_probs=191.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC-----CeEEEEcCCCcceecchhh--hhhcC---------------cccc-----
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVFTPLLA--STCVG---------------TLEF----- 113 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g-----~~v~lie~~~~~~~~~~~~--~~~~~---------------~~~~----- 113 (436)
..+||+|||||+||+++|..|++.| .+|+|||+++.+.|.+... +.... ...+
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~ 108 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLH 108 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhh
Confidence 3469999999999999999999999 9999999999877654211 00000 0000
Q ss_pred -----------cc---cccchhhcchhhhcCCCcEEEEe-EeEeEeCC---CCE--EEEEEecCCcccCCCCceeeeccE
Q 013810 114 -----------RS---VAEPIARIQPAISREPGSYFFLS-HCAGIDTD---NHV--VHCETVTDELRTLEPWKFKISYDK 173 (436)
Q Consensus 114 -----------~~---~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~---~~~--v~~~~~~~g~~~~~~~~~~~~~d~ 173 (436)
.. ....+.++...+....++.++.+ +|+.++.. .+. +.+... ++. .+++++.||+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~-~g~----g~~~~~~~d~ 183 (463)
T 3s5w_A 109 KHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISR-NAD----GEELVRTTRA 183 (463)
T ss_dssp HTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEE-ETT----SCEEEEEESE
T ss_pred hcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEe-cCC----CceEEEEeCE
Confidence 00 01122223333344455556554 78888875 442 233321 221 0122689999
Q ss_pred EEEeCCCCCCCCC-CCCCcc--ccccccChHHHH-HHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHH
Q 013810 174 LVIALGAEASTFG-IHGVKE--NATFLREVHHAQ-EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249 (436)
Q Consensus 174 lViAtG~~~~~~~-i~g~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l 249 (436)
||+|||+.|..|+ +++... .+++...+.+.. .+... ...+++|+|||+|.+|+|+|..|
T Consensus 184 lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~vvVvGgG~sg~e~a~~l 246 (463)
T 3s5w_A 184 LVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCS-----------------SGKPMKIAIIGGGQSAAEAFIDL 246 (463)
T ss_dssp EEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC------------------------CEEEEEECCSHHHHHHHHHH
T ss_pred EEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhc-----------------ccCCCeEEEECCCHhHHHHHHHH
Confidence 9999999887776 333332 345544433311 11100 01345999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCc--------------------ccHHHHHHHHHHHHh------------
Q 013810 250 SDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS--------------------FDDRLRHYATTQLSK------------ 296 (436)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~--------------------~~~~~~~~~~~~l~~------------ 296 (436)
++.. ++.+|++++|.. +++. ++++....+.+.+..
T Consensus 247 ~~~~------------~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (463)
T 3s5w_A 247 NDSY------------PSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIE 314 (463)
T ss_dssp HHHC------------TTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHH
T ss_pred HhcC------------CCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHH
Confidence 9861 238999999964 4331 222333333333222
Q ss_pred --------------cCCEEEecc-eEEEeC--Ce--EEEc---CCc--EEecceEEEecCCCCc---hhcccCCCCCCCC
Q 013810 297 --------------SGVRLVRGI-VKDVDS--QK--LILN---DGT--EVPYGLLVWSTGVGPS---TLVKSLDLPKSPG 349 (436)
Q Consensus 297 --------------~gV~i~~~~-v~~i~~--~~--v~~~---~g~--~i~~D~vi~a~G~~p~---~~~~~~~l~~~~~ 349 (436)
.||+++.++ |++++. +. +.+. +|+ ++++|.||+|+|++|+ +++..+....
T Consensus 315 ~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--- 391 (463)
T 3s5w_A 315 RIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--- 391 (463)
T ss_dssp HHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB---
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh---
Confidence 599999995 888754 33 5555 665 4999999999999998 4565554332
Q ss_pred CcEEeCCCCCCCC----CCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 350 GRIGIDEWLRVPS----VQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 350 G~i~vd~~~~~t~----~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|++.||+++++.. .++|||+|||....... .+.+...|.+++.+++..+-...
T Consensus 392 g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~~g~~----~~~l~~~a~r~~~i~~~~~~~~~ 448 (463)
T 3s5w_A 392 GDHEIGRDYRLQTDERCKVAIYAQGFSQASHGLS----DTLLSVLPVRAEEISGSLYQHLK 448 (463)
T ss_dssp C--CCCTTSBCCBCTTBCSEEEESSCCHHHHCTT----TTSSTTHHHHHHHHHHHHHHHHC
T ss_pred CCcccCcccccccCCCCCCeEEEcCCCcccCCcC----ccchhHHHHHHHHHHHHHHhhcC
Confidence 7899999999543 45699999998753321 25677889999998877665543
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-30 Score=267.16 Aligned_cols=269 Identities=17% Similarity=0.191 Sum_probs=186.5
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeE
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSH 139 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (436)
..++||+|||||+||++||..|++.|++|+|||+++.+.+...+.....+...... .+..+ .......++.++.++
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~gv~~~~~~ 446 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYE---TLRYY-RRMIEVTGVTLKLNH 446 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHH---HHHHH-HHHHHHHTCEEEESC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHH---HHHHH-HHHHHHcCCEEEeCc
Confidence 34689999999999999999999999999999999887665433322222211111 11111 112233466666553
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceee-eccEEEEeCCCCCCCCCCCCCcc-ccccccChHHHHHHHHHHHHhcccc
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKI-SYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLS 217 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~-~~d~lViAtG~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (436)
.+. .. .+ .||+||||||+.|+.|++||.+. ++++. .+. +. ..
T Consensus 447 ~v~---------------~~--------~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~---~~~------l~----~~ 490 (671)
T 1ps9_A 447 TVT---------------AD--------QLQAFDETILASGIVPRTPPIDGIDHPKVLSY---LDV------LR----DK 490 (671)
T ss_dssp CCC---------------SS--------SSCCSSEEEECCCEEECCCCCBTTTSTTEEEH---HHH------HT----SC
T ss_pred Eec---------------HH--------HhhcCCEEEEccCCCcCCCCCCCCCCCcEeeH---HHH------hh----CC
Confidence 211 11 35 89999999999999999999753 34432 111 10 00
Q ss_pred CCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHH------HHHhhhc-----------------CCCCccEEEEEe
Q 013810 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR------DVRQRYS-----------------HVKDYIHVTLIE 274 (436)
Q Consensus 218 ~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~------~~~~~~~-----------------~~~~~~~V~lv~ 274 (436)
. ..+++|+|||+|++|+|+|..|++.+.. .+.+.+. ......+|++++
T Consensus 491 ~---------~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 561 (671)
T 1ps9_A 491 A---------PVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQ 561 (671)
T ss_dssp C---------CCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEEC
T ss_pred C---------CCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEE
Confidence 0 2345999999999999999999876521 1111110 011236899998
Q ss_pred CCC-CC-CcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEE-cCC--cEEecceEEEecCCCCc-hhcccCCCCCC
Q 013810 275 ANE-IL-SSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLIL-NDG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKS 347 (436)
Q Consensus 275 ~~~-~l-~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~-~~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~ 347 (436)
+.+ .+ ..+++.....+.+.|++.||+++++. +++++++++.+ .+| +++++|.||+|+|++|+ .+++.+
T Consensus 562 ~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l----- 636 (671)
T 1ps9_A 562 RKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQPL----- 636 (671)
T ss_dssp SSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHHH-----
T ss_pred ecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHHH-----
Confidence 843 33 45667777788889999999999995 99999888877 677 57999999999999998 455432
Q ss_pred CCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhh
Q 013810 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPS 402 (436)
Q Consensus 348 ~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 402 (436)
+ ...++||++|||+... ++.+..|++||..+|.||
T Consensus 637 -----------~-~~g~~v~aiGD~~~~~--------~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 637 -----------I-DSGKTVHLIGGCDVAM--------ELDARRAIAQGTRLALEI 671 (671)
T ss_dssp -----------H-TTTCCEEECGGGTCCS--------SCCHHHHHHHHHHHHHHC
T ss_pred -----------H-hcCCCEEEECCcCccC--------chhHHHHHHHHHHHHHhC
Confidence 1 2346899999999852 346999999999999986
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=252.03 Aligned_cols=287 Identities=14% Similarity=0.130 Sum_probs=186.8
Q ss_pred CCcEEEECCchHHHHHHHhcc-cCCCeEEEEcCCCcceecchh---hhhhcCcc----------------cccc---ccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMVFTPLL---ASTCVGTL----------------EFRS---VAE 118 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~-~~g~~v~lie~~~~~~~~~~~---~~~~~~~~----------------~~~~---~~~ 118 (436)
++||+|||||+||+++|..|+ +.|++|+|||+++.+...... ++...... .... ...
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQP 87 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHH
Confidence 479999999999999999999 999999999998755322110 11100000 0000 011
Q ss_pred chhhcchhhhcCCCc--EE-EEeEeEeEeCCCC--EEEEEEecCCcccCCCCceeeeccEEEEeCC--CCCCCCCCCCCc
Q 013810 119 PIARIQPAISREPGS--YF-FLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~--~~-~~~~v~~id~~~~--~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG--~~~~~~~i~g~~ 191 (436)
.+..+........++ .+ ...+|++++.+.+ .+.+.. .+|+ ++.||+||+||| +.|+.|++||.+
T Consensus 88 ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~-~~G~--------~i~ad~lV~AtG~~s~p~~p~ipG~~ 158 (540)
T 3gwf_A 88 EILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT-DHGE--------VYRAKYVVNAVGLLSAINFPNLPGLD 158 (540)
T ss_dssp HHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEE-TTSC--------EEEEEEEEECCCSCCSBCCCCCTTGG
T ss_pred HHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEE-cCCC--------EEEeCEEEECCcccccCCCCCCCCcc
Confidence 222222233333444 33 3357888876544 555543 3565 799999999999 689999999975
Q ss_pred c---ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 192 E---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 192 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
. ..++.....+.. ...+++|+|||+|.+|+|+|..|++.+ .
T Consensus 159 ~f~g~~~~~~~~~~~~----------------------~~~~krV~VIG~G~sgve~a~~l~~~~--------------~ 202 (540)
T 3gwf_A 159 TFEGETIHTAAWPEGK----------------------SLAGRRVGVIGTGSTGQQVITSLAPEV--------------E 202 (540)
T ss_dssp GCCSEEEEGGGCCSSC----------------------CCTTSEEEEECCSHHHHHHHHHHTTTC--------------S
T ss_pred ccCCCEEEeecCCCcc----------------------ccccceEEEECCCchHHHHHHHHHhhC--------------C
Confidence 3 223332221100 023469999999999999999998765 8
Q ss_pred EEEEEeCCC--CCCcc----cHHHHHHHH---------------------------------------------------
Q 013810 269 HVTLIEANE--ILSSF----DDRLRHYAT--------------------------------------------------- 291 (436)
Q Consensus 269 ~V~lv~~~~--~l~~~----~~~~~~~~~--------------------------------------------------- 291 (436)
+|++++|.+ +++.+ .+...+.+.
T Consensus 203 ~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~ 282 (540)
T 3gwf_A 203 HLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFM 282 (540)
T ss_dssp EEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred EEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhh
Confidence 999999964 23322 222211111
Q ss_pred ----------------------H---------------------------------HHHhcCCEEE---ecceEEEeCCe
Q 013810 292 ----------------------T---------------------------------QLSKSGVRLV---RGIVKDVDSQK 313 (436)
Q Consensus 292 ----------------------~---------------------------------~l~~~gV~i~---~~~v~~i~~~~ 313 (436)
+ .+.+.+|+++ ...|+++++++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g 362 (540)
T 3gwf_A 283 FGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG 362 (540)
T ss_dssp HTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE
T ss_pred hhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe
Confidence 0 0114589998 45699999999
Q ss_pred EEEcCCcEEecceEEEecCCCCch-hcccCCCCCCCCC---------cEEeCCCCCCCCCCCEEEe-ccccccccCCCCc
Q 013810 314 LILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGG---------RIGIDEWLRVPSVQDVFAV-GDCSGYLESTGKT 382 (436)
Q Consensus 314 v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G---------~i~vd~~~~~t~~~~Vya~-GD~~~~~~~~~~~ 382 (436)
|+++||+++++|+||+|||++++. ++..+++. ..+| .+.....+.+.+.||+|.+ |..+..
T Consensus 363 v~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~------- 434 (540)
T 3gwf_A 363 VVTEDGVLHELDVLVFATGFDAVDGNYRRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPF------- 434 (540)
T ss_dssp EEETTCCEEECSEEEECCCBSCSSHHHHTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBC-------
T ss_pred EEcCCCCEEECCEEEECCccCccccCcCcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCC-------
Confidence 999999999999999999999984 55444321 1122 1223333556799999999 776542
Q ss_pred cCCccHHHHHHHHHHHHhhhh
Q 013810 383 VLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 383 ~~~~~~~~A~~~g~~aa~~i~ 403 (436)
......+..|+..+++.|.
T Consensus 435 --~s~~~~~e~q~~~i~~~i~ 453 (540)
T 3gwf_A 435 --TNLPPSIETQVEWISDTIG 453 (540)
T ss_dssp --SCHHHHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHH
Confidence 4566788899999988774
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=240.49 Aligned_cols=296 Identities=12% Similarity=0.107 Sum_probs=177.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch---hhhhhcCc----------------ccccc---ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL---LASTCVGT----------------LEFRS---VAE 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~---~~~~~~~~----------------~~~~~---~~~ 118 (436)
.++||||||||+||+++|..|++.|++|+|||+++.++.... .++..+.. ..... ...
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ 87 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQP 87 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHH
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHH
Confidence 457999999999999999999999999999999876532210 01000000 00000 011
Q ss_pred chhhcchhhhcCCCc--E-EEEeEeEeEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEeCC--CCCCCCCCCCCc
Q 013810 119 PIARIQPAISREPGS--Y-FFLSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~--~-~~~~~v~~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG--~~~~~~~i~g~~ 191 (436)
.+..+...+.+..++ . .+..+|++++.+. +.+.+.. .+|. ++.||+||+||| +.|+.|++||.+
T Consensus 88 ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~-~~G~--------~~~ad~lV~AtG~~s~p~~p~ipG~~ 158 (545)
T 3uox_A 88 EMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTL-DNEE--------VVTCRFLISATGPLSASRMPDIKGID 158 (545)
T ss_dssp HHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEE-TTTE--------EEEEEEEEECCCSCBC---CCCTTGG
T ss_pred HHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEE-CCCC--------EEEeCEEEECcCCCCCCcCCCCCCcc
Confidence 122222222222232 2 2334777776543 3455543 3565 799999999999 789999999985
Q ss_pred c---ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Q 013810 192 E---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (436)
Q Consensus 192 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~ 268 (436)
. ..++.....+. ....|. .....+++|+|||+|.+|+|+|..|++.+ .
T Consensus 159 ~f~g~~~h~~~~~~~------------~~~~~~---~~~~~~krV~VIG~G~tgve~a~~la~~~--------------~ 209 (545)
T 3uox_A 159 SFKGESFHSSRWPTD------------AEGAPK---GVDFTGKRVGVIGTGATGVQIIPIAAETA--------------K 209 (545)
T ss_dssp GCCSEEEEGGGCCBC------------TTSCBS---CCCCBTCEEEEECCSHHHHHHHHHHTTTB--------------S
T ss_pred ccCCCeEEccccccc------------cccccc---ccccCCCeEEEECCCccHHHHHHHHHhhC--------------C
Confidence 3 12222211100 000000 00124469999999999999999998765 8
Q ss_pred EEEEEeCCC--CCCcc----cHHHHHHH----------------------------------------------------
Q 013810 269 HVTLIEANE--ILSSF----DDRLRHYA---------------------------------------------------- 290 (436)
Q Consensus 269 ~V~lv~~~~--~l~~~----~~~~~~~~---------------------------------------------------- 290 (436)
+|++++|.+ +++.. ++...+.+
T Consensus 210 ~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~ 289 (545)
T 3uox_A 210 ELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWL 289 (545)
T ss_dssp EEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHH
T ss_pred EEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHH
Confidence 999999964 23321 11111111
Q ss_pred -------------------------------------------------------HHHHHhcCCEEEe---cceEEEeCC
Q 013810 291 -------------------------------------------------------TTQLSKSGVRLVR---GIVKDVDSQ 312 (436)
Q Consensus 291 -------------------------------------------------------~~~l~~~gV~i~~---~~v~~i~~~ 312 (436)
.+.|.+.+|+++. ..|++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~ 369 (545)
T 3uox_A 290 SGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPE 369 (545)
T ss_dssp TSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETT
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccC
Confidence 0112233888984 469999999
Q ss_pred eEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCC----------CCCCCCCCCEEEeccccccccCCCC
Q 013810 313 KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE----------WLRVPSVQDVFAVGDCSGYLESTGK 381 (436)
Q Consensus 313 ~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~----------~~~~t~~~~Vya~GD~~~~~~~~~~ 381 (436)
+|++.|| ++++|+||+|||+.++ .++..+.+. ..+| ..+++ .+.+.+.||+|.+.--... .+
T Consensus 370 gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~i~-g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~---~~- 442 (545)
T 3uox_A 370 GIKTADA-AYDLDVIIYATGFDAVTGSLDRIDIR-GKDN-VRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNG---ST- 442 (545)
T ss_dssp EEEESSC-EEECSEEEECCCCBSSSCSCTTSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGT---GG-
T ss_pred eEEeCCC-eeecCEEEECCccccccccCCCceEE-CCCC-ccHHHhhccccceeeccccCCCCcEEEEeCCCCC---Cc-
Confidence 9999999 9999999999999985 333322221 1223 22221 2344789999998443321 00
Q ss_pred ccCCccHHHHHHHHHHHHhhhh
Q 013810 382 TVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 382 ~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
.......+..|+..+++.|.
T Consensus 443 --~~s~~~~~e~~~~~i~~~i~ 462 (545)
T 3uox_A 443 --FCNVGVCGGLQAEWVLRMIS 462 (545)
T ss_dssp --GSCHHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHH
Confidence 13456778899999988775
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-27 Score=237.11 Aligned_cols=290 Identities=14% Similarity=0.141 Sum_probs=182.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch---hhhhhcCcc----------------ccc---cccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL---LASTCVGTL----------------EFR---SVAE 118 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~---~~~~~~~~~----------------~~~---~~~~ 118 (436)
.++||||||||+||+++|..|++.|++|+|||+++.+..... .++..+..+ ... ....
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ 99 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQP 99 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHH
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHH
Confidence 347999999999999999999999999999999876532211 111110000 000 0011
Q ss_pred chhhcchhhhcCCCc--EE-EEeEeEeEeCCCC--EEEEEEecCCcccCCCCceeeeccEEEEeCC--CCCCCCCCCCCc
Q 013810 119 PIARIQPAISREPGS--YF-FLSHCAGIDTDNH--VVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVK 191 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~--~~-~~~~v~~id~~~~--~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG--~~~~~~~i~g~~ 191 (436)
.+..+.....+..++ .+ ...+|++++.+.. .+.+.. .+|. ++.||+||+||| +.|+.|++||.+
T Consensus 100 ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~-~~G~--------~i~ad~lV~AtG~~s~p~~p~ipG~~ 170 (549)
T 4ap3_A 100 EILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT-DRGD--------EVSARFLVVAAGPLSNANTPAFDGLD 170 (549)
T ss_dssp HHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSEEECCCCCCTTGG
T ss_pred HHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEE-CCCC--------EEEeCEEEECcCCCCCCCCCCCCCcc
Confidence 222222223333443 23 3347888876544 555543 3565 799999999999 789999999986
Q ss_pred c---ccccccChH-HHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 013810 192 E---NATFLREVH-HAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (436)
Q Consensus 192 ~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~ 267 (436)
. ..++..... +... ..+++|+|||+|.+|+|+|..|++.+
T Consensus 171 ~f~g~~~~~~~~~~~~~~----------------------~~~krV~VIG~G~sgve~a~~l~~~~-------------- 214 (549)
T 4ap3_A 171 RFTGDIVHTARWPHDGVD----------------------FTGKRVGVIGTGSSGIQSIPIIAEQA-------------- 214 (549)
T ss_dssp GCCSEEEEGGGCCTTCCC----------------------CBTCEEEEECCSHHHHHHHHHHHHHB--------------
T ss_pred cCCCceEEeccccccccc----------------------cCCCEEEEECCCchHHHHHHHHHhhC--------------
Confidence 3 223332221 1100 23459999999999999999999876
Q ss_pred cEEEEEeCCCC--CCcccHHH----HHH----------------------------------------------------
Q 013810 268 IHVTLIEANEI--LSSFDDRL----RHY---------------------------------------------------- 289 (436)
Q Consensus 268 ~~V~lv~~~~~--l~~~~~~~----~~~---------------------------------------------------- 289 (436)
.+|++++|.+. ++..+.++ .+.
T Consensus 215 ~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~ 294 (549)
T 4ap3_A 215 EQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFS 294 (549)
T ss_dssp SEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHT
T ss_pred CEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHH
Confidence 89999999642 33221111 100
Q ss_pred -------------------HHH-----------------------------------HHHhcCCEEE---ecceEEEeCC
Q 013810 290 -------------------ATT-----------------------------------QLSKSGVRLV---RGIVKDVDSQ 312 (436)
Q Consensus 290 -------------------~~~-----------------------------------~l~~~gV~i~---~~~v~~i~~~ 312 (436)
+.+ .+.+.+|+++ ...|++|+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~~~~I~~it~~ 374 (549)
T 4ap3_A 295 KAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLRSTPIVGMDET 374 (549)
T ss_dssp TSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETTTSCEEEEETT
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCceEEeCC
Confidence 000 0223388888 6679999999
Q ss_pred eEEEcCCcEEecceEEEecCCCCch-hcccCCCCCCCCCcEEeC----------CCCCCCCCCCEEEeccccccccCCCC
Q 013810 313 KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGID----------EWLRVPSVQDVFAVGDCSGYLESTGK 381 (436)
Q Consensus 313 ~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd----------~~~~~t~~~~Vya~GD~~~~~~~~~~ 381 (436)
+|++.|| ++++|+||+|||+.+++ ++..+.+. ..+| +.++ ..+.+.+.||.|.+.--... .+
T Consensus 375 gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~-g~~G-~~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~---~~- 447 (549)
T 4ap3_A 375 GIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIV-GRGG-RTLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSP---SV- 447 (549)
T ss_dssp EEEESSC-EEECSEEEECCCEEESSTTGGGSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSC---GG-
T ss_pred cEEeCCC-ceecCEEEECCcccccccccCceeEE-CCCC-cCHHHhhccchhhccccccCCCCcEEEEeCCCCC---Cc-
Confidence 9999999 99999999999999884 55444322 1122 3333 22344689999987432211 00
Q ss_pred ccCCccHHHHHHHHHHHHhhhhh
Q 013810 382 TVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 382 ~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
.......+..|+..+++-|..
T Consensus 448 --~~s~~~~~e~~~~~i~~~i~~ 468 (549)
T 4ap3_A 448 --LANMVLHSELHVDWVADAIAY 468 (549)
T ss_dssp --GSCHHHHHHHHHHHHHHHHHH
T ss_pred --CccHHHHHHHHHHHHHHHHHH
Confidence 134566788899988877753
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=227.15 Aligned_cols=291 Identities=14% Similarity=0.189 Sum_probs=181.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch---hhhhhcCc----c--c----------ccc---cccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL---LASTCVGT----L--E----------FRS---VAEP 119 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~---~~~~~~~~----~--~----------~~~---~~~~ 119 (436)
.+||+|||||+||+++|..|++.|++|+|||+++.+..... .++..... . . ... ....
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 95 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 95 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHH
Confidence 47999999999999999999999999999999876532110 01100000 0 0 000 0011
Q ss_pred hhhcchhhhcCCC--cEE-EEeEeEeEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEeCC--CCCCCCCCCCCcc
Q 013810 120 IARIQPAISREPG--SYF-FLSHCAGIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVKE 192 (436)
Q Consensus 120 ~~~~~~~~~~~~~--~~~-~~~~v~~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG--~~~~~~~i~g~~~ 192 (436)
+.++...+....+ ..+ ...+|++++.+. +.+.+.. .+|. ++.||+||+||| +.|+.|++||.+.
T Consensus 96 i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~-~~G~--------~~~ad~vV~AtG~~s~p~~p~i~G~~~ 166 (542)
T 1w4x_A 96 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT-NHGD--------RIRARYLIMASGQLSVPQLPNFPGLKD 166 (542)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSCCCCCCCCCTTGGG
T ss_pred HHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEE-CCCC--------EEEeCEEEECcCCCCCCCCCCCCCccc
Confidence 1222222222222 222 234777776543 3555543 3565 789999999999 5788899999752
Q ss_pred ---ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE
Q 013810 193 ---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (436)
Q Consensus 193 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (436)
..++...... ... ...+++|+|||+|.+|+|+|..|+..+ .+
T Consensus 167 f~G~~~hs~~~~~--------------~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~--------------~~ 211 (542)
T 1w4x_A 167 FAGNLYHTGNWPH--------------EPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQA--------------AE 211 (542)
T ss_dssp CCSEEEEGGGCCS--------------SCC-------CCBTCEEEEECCSHHHHHHHHHHHHHB--------------SE
T ss_pred CCCceEECCCCCC--------------chh-------ccCCCEEEEECCCccHHHHHHHHhhcC--------------ce
Confidence 1233221110 000 023469999999999999999999876 89
Q ss_pred EEEEeCCC-C-CCc----ccHHHH--------------------------------------------------------
Q 013810 270 VTLIEANE-I-LSS----FDDRLR-------------------------------------------------------- 287 (436)
Q Consensus 270 V~lv~~~~-~-l~~----~~~~~~-------------------------------------------------------- 287 (436)
|+++.|.+ . ++. +.+...
T Consensus 212 vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 291 (542)
T 1w4x_A 212 LFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAA 291 (542)
T ss_dssp EEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGS
T ss_pred EEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHH
Confidence 99999853 2 121 111110
Q ss_pred ---------------HHHHHH-----------------------------------HHhcCCEEE---ecceEEEeCCeE
Q 013810 288 ---------------HYATTQ-----------------------------------LSKSGVRLV---RGIVKDVDSQKL 314 (436)
Q Consensus 288 ---------------~~~~~~-----------------------------------l~~~gV~i~---~~~v~~i~~~~v 314 (436)
+.+.+. +.+.+|+++ ...|+++++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv 371 (542)
T 1w4x_A 292 YRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGV 371 (542)
T ss_dssp STTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEE
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeE
Confidence 000111 112357777 345999999999
Q ss_pred EEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeC---------CCCCCCCCCCEEEe-ccccccccCCCCcc
Q 013810 315 ILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGID---------EWLRVPSVQDVFAV-GDCSGYLESTGKTV 383 (436)
Q Consensus 315 ~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd---------~~~~~t~~~~Vya~-GD~~~~~~~~~~~~ 383 (436)
+++| +++++|+||+|||+.++ .++..+++. ..+|....+ ..+.+.+.||+|++ |+.+...
T Consensus 372 ~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~-g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~------- 442 (542)
T 1w4x_A 372 RTSE-REYELDSLVLATGFDALTGALFKIDIR-GVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA------- 442 (542)
T ss_dssp EESS-CEEECSEEEECCCCCCTTHHHHTSEEE-CGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG-------
T ss_pred EeCC-eEEecCEEEEcCCccccccCcCceeeE-CCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcc-------
Confidence 9999 99999999999999996 555544332 233433332 12555788999998 8886421
Q ss_pred CCccHHHHHHHHHHHHhhhhhh
Q 013810 384 LPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 384 ~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.+..+..|..|++.++++|...
T Consensus 443 ~~~~~~~~e~q~~~ia~~i~~~ 464 (542)
T 1w4x_A 443 LSNMLVSIEQHVEWVTDHIAYM 464 (542)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 1455688999999999999654
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-21 Score=194.80 Aligned_cols=301 Identities=12% Similarity=0.091 Sum_probs=172.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccC--------------CCeEEEEcCCCcceecch--hhhhhcCccccc---------
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTS--------------LYDVVCVSPRNHMVFTPL--LASTCVGTLEFR--------- 114 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~--------------g~~v~lie~~~~~~~~~~--~~~~~~~~~~~~--------- 114 (436)
...+||||||+||+||++|..|.+. +.....+|+.+.+.|++. +++.........
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence 3458999999999999999998653 235788999988877643 222111111000
Q ss_pred -------------------------ccccchhhcchhhhcCCCcEE-EEeEeEeEeCCC--------CEEEEEE--ecCC
Q 013810 115 -------------------------SVAEPIARIQPAISREPGSYF-FLSHCAGIDTDN--------HVVHCET--VTDE 158 (436)
Q Consensus 115 -------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~v~~id~~~--------~~v~~~~--~~~g 158 (436)
....++.++...+++..+..+ +..+|+++.... ..+.+.. ...|
T Consensus 117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g 196 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETG 196 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTC
T ss_pred CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCc
Confidence 011133444444444444333 334777775422 1243332 2223
Q ss_pred cccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECC
Q 013810 159 LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (436)
Q Consensus 159 ~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~ 238 (436)
. ..++.+++||+|||..|..|..++....+++...+.+....... ....+|+|+|||+
T Consensus 197 ~------~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~----------------~~~~gKrV~VVG~ 254 (501)
T 4b63_A 197 E------ISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLK----------------DKSKPYNIAVLGS 254 (501)
T ss_dssp C------EEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSC----------------CTTSCCEEEEECC
T ss_pred e------EEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccc----------------cccCCcEEEEECC
Confidence 2 23688999999999988888777666677777666543321110 1134569999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCCc---------ccHH-----------HHHHH-------
Q 013810 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS---------FDDR-----------LRHYA------- 290 (436)
Q Consensus 239 G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~~---------~~~~-----------~~~~~------- 290 (436)
|.||+|++..|++.. .+.+|+++.|++ +.+. +.++ ....+
T Consensus 255 G~SA~ei~~~L~~~~------------~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~ 322 (501)
T 4b63_A 255 GQSAAEIFHDLQKRY------------PNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKAT 322 (501)
T ss_dssp SHHHHHHHHHHHHHS------------TTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHhcC------------CCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 999999999998642 237999999963 2211 1111 11111
Q ss_pred -------------HHHHHh----------cCCEEEecc-eEE------------------EeCCeEEEcCCcEEecceEE
Q 013810 291 -------------TTQLSK----------SGVRLVRGI-VKD------------------VDSQKLILNDGTEVPYGLLV 328 (436)
Q Consensus 291 -------------~~~l~~----------~gV~i~~~~-v~~------------------i~~~~v~~~~g~~i~~D~vi 328 (436)
.+.+.+ ....+..+. +.. ++.+++.+.+|+++++|.||
T Consensus 323 ~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI 402 (501)
T 4b63_A 323 NYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALM 402 (501)
T ss_dssp TSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEE
T ss_pred hhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEE
Confidence 111100 011232221 222 22345677889999999999
Q ss_pred EecCCCCc--h-hcccC-CCCCCCCCcEEeCCCCCCC-------CCCCEEEeccccccccCCCCccCCccHHHHHHHHHH
Q 013810 329 WSTGVGPS--T-LVKSL-DLPKSPGGRIGIDEWLRVP-------SVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397 (436)
Q Consensus 329 ~a~G~~p~--~-~~~~~-~l~~~~~G~i~vd~~~~~t-------~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~ 397 (436)
+|||++++ . ++..+ .+..|.+|.+.|+.++++. ..++||+-|-+...+... -+.+...|.+.|.+
T Consensus 403 ~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~----~~~Ls~~a~R~~~I 478 (501)
T 4b63_A 403 VATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLS----DSLLSVLAVRGGEM 478 (501)
T ss_dssp ECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTT----TTSSTTHHHHHHHH
T ss_pred ECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcc----hhhHHHHHHHHHHH
Confidence 99999987 2 23222 2455777888888776642 246699999654422211 14455567777765
Q ss_pred H
Q 013810 398 F 398 (436)
Q Consensus 398 a 398 (436)
+
T Consensus 479 ~ 479 (501)
T 4b63_A 479 V 479 (501)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-22 Score=174.04 Aligned_cols=150 Identities=24% Similarity=0.309 Sum_probs=127.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC---------Ccc-----cHHHHHHHHHHHHh
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL---------SSF-----DDRLRHYATTQLSK 296 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l---------~~~-----~~~~~~~~~~~l~~ 296 (436)
+|+|||+|++|+++|..|++.+ .+|+++++.+ .+ +.+ ++++.+.+.+.+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAG--------------LKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999876 8999999853 33 223 47888889999999
Q ss_pred cCCEEEecceEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccc
Q 013810 297 SGVRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (436)
Q Consensus 297 ~gV~i~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~ 372 (436)
.||+++.+++++++. + .+.+++| ++++|.||+|+|..|+ +.+.++++++ +|+|.||+++| |+.|+|||+|||
T Consensus 69 ~gv~v~~~~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~-~~~~~g~~~~-~g~i~vd~~~~-t~~~~i~a~GD~ 144 (180)
T 2ywl_A 69 YGAEVRPGVVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT-LPSLLGLTRR-GAYIDTDEGGR-TSYPRVYAAGVA 144 (180)
T ss_dssp TTCEEEECCCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH-HHHHHTCCEE-TTEECCCTTCB-CSSTTEEECGGG
T ss_pred cCCEEEeCEEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC-ccccCCCCcc-CceEEeCCCCC-cCCCCEEEeecc
Confidence 999999988777764 2 3666777 8999999999999985 4567788888 89999999999 899999999999
Q ss_pred cccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 373 SGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+..+ .+++..|..||+.||.||.....
T Consensus 145 ~~~~--------~~~~~~A~~~g~~aa~~i~~~~~ 171 (180)
T 2ywl_A 145 RGKV--------PGHAIISAGDGAYVAVHLVSDLR 171 (180)
T ss_dssp GTCC--------SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc--------hhhHHHHHHhHHHHHHHHHHHhh
Confidence 9862 23889999999999999987643
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-19 Score=174.29 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=118.0
Q ss_pred cCCCcEEEEe-EeEeEeCCCCEEE-EEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHH
Q 013810 129 REPGSYFFLS-HCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEI 206 (436)
Q Consensus 129 ~~~~~~~~~~-~v~~id~~~~~v~-~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~ 206 (436)
+..++.++.+ .| .+..+++.+. +....++. ++.+|.||+|||..+..++++.. ....+.+.+.-+...
T Consensus 130 ~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g--------~~~a~~VVlAtGg~~~~~~~~~~-~~~~tGdgi~~a~~a 199 (472)
T 2e5v_A 130 REEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL--------VEDVDKLVLATGGYSYLYEYSST-QSTNIGDGMAIAFKA 199 (472)
T ss_dssp HHTTCCEECCCEE-EEEEETTEEEEEEETTTEE--------ECCCSEEEECCCCCGGGSSSBSS-CTTCSCHHHHHHHHT
T ss_pred HhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC--------eEEeeeEEECCCCCcccCccccC-CCCCchHHHHHHHHc
Confidence 3457777766 57 8766555542 11111222 57799999999998766554321 111111111111110
Q ss_pred HHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHH
Q 013810 207 RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR 285 (436)
Q Consensus 207 ~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~ 285 (436)
.. .+..+.- - .....++++|+| +++++..+...+ ..+ +..++ ++++.+++.
T Consensus 200 Ga------~~~d~e~---~--q~~p~~~~~ggg--~~~~ae~~~~~G--------------~~~-v~~~g~rf~~~~~~~ 251 (472)
T 2e5v_A 200 GT------ILADMEF---V--QFHPTVTSLDGE--VFLLTETLRGEG--------------AQI-INENGERFLFNYDKR 251 (472)
T ss_dssp TC------CEECTTC---E--EEEEEEECGGGC--CEECCTHHHHTT--------------CEE-EETTCCCGGGGTCTT
T ss_pred CC------CEeCCcc---e--EEEeEEEccCCC--ceeeehhhcCCc--------------eEE-ECCCCCCCCccCCcc
Confidence 00 0000000 0 000134556766 777777666544 555 55554 455544443
Q ss_pred H--------HHHHHHHHHhcCCEEEecceEEEeCCeEEEcCCcEEe-cceEEEecCCCCchhcccCCCCCCCCCcEEeCC
Q 013810 286 L--------RHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVP-YGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE 356 (436)
Q Consensus 286 ~--------~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~-~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~ 356 (436)
. .+.+.+.+++.+. ++.+. ..++. + .++++ .|.++++.|..|+.+++..+......|.|.||+
T Consensus 252 ~el~~rd~v~~~i~~~~~~~~~-v~ld~-~~~~~----~--~~~~~~~~~~~~~~G~dp~~~i~v~p~~~~~~GGI~vd~ 323 (472)
T 2e5v_A 252 GELAPRDILSRAIYIEMLKGHK-VFIDL-SKIED----F--ERKFPVVAKYLARHGHNYKVKIPIFPAAHFVDGGIRVNI 323 (472)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCC-EEEEC-TTCTT----H--HHHCHHHHHHHHHTTCCTTSCEECEEEEEEESCEEECCT
T ss_pred cCcCchhHHHHHHHHHHHhCCc-EEEec-cchHH----H--HHHhHHHHHHHHHhCcCcccceEeehhhceeCCCeEECC
Confidence 2 5566666766653 33321 00000 1 01233 477788889998722221111122357899999
Q ss_pred CCCCCCCCCEEEeccccccccCCCC-ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 357 WLRVPSVQDVFAVGDCSGYLESTGK-TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 357 ~~~~t~~~~Vya~GD~~~~~~~~~~-~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
++| |+.|+|||+|||++... .|. +........+...|+.|+++|...
T Consensus 324 ~~~-t~ipgLyAaGd~a~~~~-hg~~rl~~~sl~~~~v~G~~a~~~~a~~ 371 (472)
T 2e5v_A 324 RGE-SNIVNLYAIGEVSDSGL-HGANRLASNSLLEGLVFGINLPRYVDSS 371 (472)
T ss_dssp TCB-CSSBTEEECGGGEECSS-STTSCCTTHHHHHHHHHHHHGGGTTTSC
T ss_pred CCc-cccCCEEecchhccccc-CCCCCCCcccHHHHHHHHHHHHHHHHhh
Confidence 999 89999999999988211 111 111223344555577777777643
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-16 Score=151.65 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=33.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++||+|||||+||++||..|++.|.+|+|||+.+..
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 479999999999999999999999999999998754
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=133.08 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=107.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-C-----------------CCc-------ccHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-----------------LSS-------FDDRL 286 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~-----------------l~~-------~~~~~ 286 (436)
+|+|||+|++|+++|..|++.+ .+|+++++.. . ... ....+
T Consensus 5 dVvVVGgG~aGl~aA~~la~~g--------------~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 70 (232)
T 2cul_A 5 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 70 (232)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHH
Confidence 7999999999999999999876 8999999851 0 000 11366
Q ss_pred HHHHHHHHHhc-CCEEEecceEEEeC--C---eEEEcCCcEEecceEEEecCCCCch---------------------h-
Q 013810 287 RHYATTQLSKS-GVRLVRGIVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPST---------------------L- 338 (436)
Q Consensus 287 ~~~~~~~l~~~-gV~i~~~~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~---------------------~- 338 (436)
.+.+.+.+++. |++++..+++++.. + .|.+.+|+++.+|.||+|+|...+. +
T Consensus 71 ~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~ 150 (232)
T 2cul_A 71 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLL 150 (232)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHH
T ss_pred HHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhC
Confidence 67788888886 99999666887753 3 4667888889999999999995431 1
Q ss_pred --cccCCCCCCCCC--------c-------EEeCC------CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 339 --VKSLDLPKSPGG--------R-------IGIDE------WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 339 --~~~~~l~~~~~G--------~-------i~vd~------~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
+.+.+++++... . ..+.. .+..|++|+|||+|||+ . ......|+.||
T Consensus 151 ~~l~~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~---------~g~~~~~~~~g 220 (232)
T 2cul_A 151 EDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R---------EGDYARMSEEG 220 (232)
T ss_dssp HHHHHTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S---------CCCHHHHHHHH
T ss_pred HHHHhCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c---------CccHHHHHHHH
Confidence 223344332111 0 11110 12237999999999999 5 45788899999
Q ss_pred HHHHhhhhhh
Q 013810 396 HLFQKPSFLL 405 (436)
Q Consensus 396 ~~aa~~i~~~ 405 (436)
+.+|.+|...
T Consensus 221 ~~~a~~i~~~ 230 (232)
T 2cul_A 221 KRLAEHLLHE 230 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999764
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.4e-12 Score=125.93 Aligned_cols=121 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC-cceec---chhhhh-----------hcCc---------ccccc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT---PLLAST-----------CVGT---------LEFRS-- 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~-~~~~~---~~~~~~-----------~~~~---------~~~~~-- 115 (436)
.+||+|||||+||++||..|++.|.+|+|||++. .+... |...+. ..+. ..+..
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 4899999999999999999999999999999874 21110 000000 0000 00000
Q ss_pred ------cc--------cchhhcchhhhcC-CCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 116 ------VA--------EPIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 116 ------~~--------~~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
.. ..+.......... .++.++.++|+.+..+++.+.-....+|. .+.+|+||+|||.
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~--------~i~AdaVVLATG~ 178 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGV--------EYKTKAVVVTTGT 178 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSC--------EEECSEEEECCTT
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCc--------EEEeCEEEEccCC
Confidence 00 0111111112233 58888888999988766655322234565 8999999999999
Q ss_pred CCCCCCCCCC
Q 013810 181 EASTFGIHGV 190 (436)
Q Consensus 181 ~~~~~~i~g~ 190 (436)
.+..+.++|.
T Consensus 179 ~s~~~~~~G~ 188 (637)
T 2zxi_A 179 FLNGVIYIGD 188 (637)
T ss_dssp CBTCEEEETT
T ss_pred CccCceeccc
Confidence 8887777765
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=107.97 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=73.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCccccccc-----------ccchhhcchhhhcC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSV-----------AEPIARIQPAISRE 130 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 130 (436)
.+||+|||||++|+++|..|++.|.+|+|||+.......+..+. ..+ .....+ ...+........+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~-~~~-~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~ 80 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPP-KPP-FPPGSLLERAYDPKDERVWAFHARAKYLLEG 80 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCC-CSC-CCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCcc-ccc-cchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999732111000000 000 000000 00122222222333
Q ss_pred -CCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCC
Q 013810 131 -PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (436)
Q Consensus 131 -~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~ 190 (436)
.++.++..+|+.++.+++.+......+|. ++.+|+||+|+|........+|.
T Consensus 81 ~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~--------~i~a~~VV~A~G~~s~~~~~~G~ 133 (232)
T 2cul_A 81 LRPLHLFQATATGLLLEGNRVVGVRTWEGP--------PARGEKVVLAVGSFLGARLFLGG 133 (232)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSC--------CEECSEEEECCTTCSSCEEEETT
T ss_pred CCCcEEEEeEEEEEEEeCCEEEEEEECCCC--------EEECCEEEECCCCChhhceecCC
Confidence 48888878899888765554322234565 79999999999997655444454
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4e-11 Score=121.06 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=75.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc-ceec---chhhh-----------hhcCc---------ccccc--
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLAS-----------TCVGT---------LEFRS-- 115 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~-~~~~---~~~~~-----------~~~~~---------~~~~~-- 115 (436)
.+||+|||||+||++||..|++.|.+|+|||++.. +... |...+ ...+. ..+..
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~ 107 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILN 107 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhh
Confidence 58999999999999999999999999999998742 1110 00000 00000 00000
Q ss_pred ------cc--------cchhhcchhhhcC-CCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 116 ------VA--------EPIARIQPAISRE-PGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 116 ------~~--------~~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
.. ..+.......... .++.++.++|+.+..+++.+......+|. .+.+|+||+|||.
T Consensus 108 ~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~--------~I~Ad~VVLATGt 179 (651)
T 3ces_A 108 ASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGL--------KFRAKAVVLTVGT 179 (651)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSE--------EEEEEEEEECCST
T ss_pred cccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCC--------EEECCEEEEcCCC
Confidence 00 0111111122233 68888888999997665554322233554 7999999999999
Q ss_pred CCCCCCCCCC
Q 013810 181 EASTFGIHGV 190 (436)
Q Consensus 181 ~~~~~~i~g~ 190 (436)
.+..+.++|.
T Consensus 180 ~s~~~~i~G~ 189 (651)
T 3ces_A 180 FLDGKIHIGL 189 (651)
T ss_dssp TTCCEEECC-
T ss_pred CccCccccCc
Confidence 9887777775
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-11 Score=100.97 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=70.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAG 142 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 142 (436)
++|+|||||++|+++|..|++.|.+|+|||+.+.............+.+. ......+.+......+..++.++.++|+.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~gv~v~~~~v~~ 80 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLD-EPSGEELLRRLEAHARRYGAEVRPGVVKG 80 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTT-CCCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcC-CCCHHHHHHHHHHHHHHcCCEEEeCEEEE
Confidence 68999999999999999999999999999998643211000000001000 00011222222333445678888888888
Q ss_pred EeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 143 IDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 143 id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
++.+.+.+.+.. .++ ++.+|+||+|+|..|..
T Consensus 81 i~~~~~~~~v~~-~~g---------~i~ad~vI~A~G~~~~~ 112 (180)
T 2ywl_A 81 VRDMGGVFEVET-EEG---------VEKAERLLLCTHKDPTL 112 (180)
T ss_dssp EEECSSSEEEEC-SSC---------EEEEEEEEECCTTCCHH
T ss_pred EEEcCCEEEEEE-CCC---------EEEECEEEECCCCCCCc
Confidence 887655555442 233 68999999999998744
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-10 Score=104.53 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=104.0
Q ss_pred cEEEECCChHHHHHHHHHHHH-HHHHHHhhhcCCCCccEEEEEeCCCCCC-c----------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEANEILS-S---------------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~-~~~~~~~~~~~~~~~~~V~lv~~~~~l~-~---------------------------- 281 (436)
+|+|||+|++|+.+|..|++. + .+|+++++.+... .
T Consensus 41 dVvIIGgG~aGl~aA~~la~~~G--------------~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 106 (284)
T 1rp0_A 41 DVVVVGAGSAGLSAAYEISKNPN--------------VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAY 106 (284)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTT--------------SCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCC
T ss_pred CEEEECccHHHHHHHHHHHHcCC--------------CeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCc
Confidence 799999999999999999874 4 8999999853210 0
Q ss_pred ----------ccHHHHHHHHHHHHh-cCCEEEecc-eEEEe--CC---eEEEc---------CC-----cEEecceEEEe
Q 013810 282 ----------FDDRLRHYATTQLSK-SGVRLVRGI-VKDVD--SQ---KLILN---------DG-----TEVPYGLLVWS 330 (436)
Q Consensus 282 ----------~~~~~~~~~~~~l~~-~gV~i~~~~-v~~i~--~~---~v~~~---------~g-----~~i~~D~vi~a 330 (436)
...++...+.+.+.+ .||+++.+. +.++. ++ +|.+. +| .++++|.||+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~A 186 (284)
T 1rp0_A 107 DEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSS 186 (284)
T ss_dssp EECSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEEC
T ss_pred ccCCCEEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEEC
Confidence 123444455566655 699999984 87774 33 34442 32 57999999999
Q ss_pred cCCCCc--h----hcccCC--CCCCCCCcEEeCC-------CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 331 TGVGPS--T----LVKSLD--LPKSPGGRIGIDE-------WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 331 ~G~~p~--~----~~~~~~--l~~~~~G~i~vd~-------~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
+|..+. . ++..++ +.+.....+.++. ..+ +..|++|++||++.. ..+.+...+.+..+..+|
T Consensus 187 tG~~s~~~~~~~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~-~~~p~i~a~G~~~~~--~~g~~~~gp~~~~~~~sG 263 (284)
T 1rp0_A 187 CGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTR-EVVPGMIVTGMEVAE--IDGAPRMGPTFGAMMISG 263 (284)
T ss_dssp CCSSSTTTTHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCE-EEETTEEECTHHHHH--HHTCEECCSCCHHHHHHH
T ss_pred CCCchHHHHHHHHHhhhccCCCCcCCcCCchhhhhhHHHhhccc-cccCCEEEEeeehhh--hcCCCCcChHHHHHHHhH
Confidence 998765 2 222222 1222222233332 234 577999999998742 122222334677889999
Q ss_pred HHHHhhhhhhc
Q 013810 396 HLFQKPSFLLA 406 (436)
Q Consensus 396 ~~aa~~i~~~~ 406 (436)
+.+|.+|....
T Consensus 264 ~~~a~~i~~~l 274 (284)
T 1rp0_A 264 QKAGQLALKAL 274 (284)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-10 Score=109.27 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=33.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+.++||+|||||+||++||..|++.|.+|+|||+.+..
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~ 62 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAP 62 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 34589999999999999999999999999999998764
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=6.1e-10 Score=109.16 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecC--------CCCc-hh--cccCCCCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTG--------VGPS-TL--VKSLDLPKSP 348 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G--------~~p~-~~--~~~~~l~~~~ 348 (436)
.+...+...+++.| +++.++ |++|+. + .|.+.+|+++.+|.||+|+| +.|+ +. .+.++.. ..
T Consensus 205 g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~-~~ 282 (431)
T 3k7m_X 205 GSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEG-HG 282 (431)
T ss_dssp CTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHC-CC
T ss_pred cHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhC-CC
Confidence 34555666666778 999985 988864 2 35667888899999999999 7776 21 1111111 12
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
...++|+..++ +..++||+.||+..
T Consensus 283 ~~~~kv~~~~~-~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 283 GQGLKILIHVR-GAEAGIECVGDGIF 307 (431)
T ss_dssp CCEEEEEEEEE-SCCTTEEEEBSSSS
T ss_pred cceEEEEEEEC-CCCcCceEcCCCCE
Confidence 23489999999 88899999999843
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=99.73 Aligned_cols=121 Identities=15% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCcceecchhhh-h-------------h--cCccccc--------c
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFTPLLAS-T-------------C--VGTLEFR--------S 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~~~~~~~~~-~-------------~--~~~~~~~--------~ 115 (436)
.++||+|||||++|++||..|++. |.+|+|||+.+.........+ . + .|..... .
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 117 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH 117 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecC
Confidence 347999999999999999999997 999999999875421100000 0 0 0000000 0
Q ss_pred cccchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEE---EEEEe----c--CCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 116 VAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVV---HCETV----T--DELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v---~~~~~----~--~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.......+.....+..++.++.+ +|+.++.+.+.+ .+... . ++. ......+.+|.||+|+|..+..
T Consensus 118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~---~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQS---CMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSS---CCCCEEEEEEEEEECCCSSSTT
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccc---cCceEEEECCEEEECCCCchHH
Confidence 00011112222334468888775 888887665543 22210 0 110 0001278999999999987654
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=108.79 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=72.5
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec------chhhhh--hcCcc------cc---ccc-ccchh
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT------PLLAST--CVGTL------EF---RSV-AEPIA 121 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~------~~~~~~--~~~~~------~~---~~~-~~~~~ 121 (436)
...++|+|||||++|+++|..|++.|++|+|||+.+..... +..... ..|.. .. ..+ ...+.
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~ 169 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQ 169 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHH
Confidence 34689999999999999999999999999999998754211 100000 00000 00 000 01122
Q ss_pred hcchhhhcCCCcEEEEe-EeEeEeCC---CCEEEEEEe-c-CCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 122 RIQPAISREPGSYFFLS-HCAGIDTD---NHVVHCETV-T-DELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 122 ~~~~~~~~~~~~~~~~~-~v~~id~~---~~~v~~~~~-~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
..........++.++.+ +|++++.+ .+.+.+... . +|. +.++.+|+||+|+|..+....+.+
T Consensus 170 ~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~------~~~i~ad~VV~A~G~~S~~r~~~~ 237 (497)
T 2bry_A 170 LLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQ------LASYEFDVLISAAGGKFVPEGFTI 237 (497)
T ss_dssp HHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHH------HHTCCBSEEEECCCTTCCCTTCEE
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCC------EEEEEcCEEEECCCCCcccccccc
Confidence 22222233367887765 88888763 223333221 1 341 116899999999999876654443
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=107.53 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=40.2
Q ss_pred EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 352 i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|.+|+++|+.+.+|+|+|||++++ ...+..|..+|..+|+.|....
T Consensus 497 i~~~~~~~~~~~~gly~~GegaG~---------a~gi~~Aa~~G~~~a~~i~~~~ 542 (549)
T 3nlc_A 497 IKRGKDFQSVNLKGFYPAGEGAGY---------AGGILSAGIDGIKVAEAVARDI 542 (549)
T ss_dssp CCCTTTTSCTTCBTEEECHHHHTS---------CCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCceECCcCCEEEccccCCh---------hhHHHHHHHHHHHHHHHHHHHh
Confidence 678888994489999999999997 7788999999999999998654
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-09 Score=104.68 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=33.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+.+||+|||||+||++||+.|++.|.+|+|||+.+..
T Consensus 24 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~ 61 (447)
T 2i0z_A 24 AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 61 (447)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 34589999999999999999999999999999987643
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=102.90 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~ 46 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL 46 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 579999999999999999999999999999987654
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-09 Score=104.89 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+||||||||++||+.|++.|++|+|||+.+.+
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~ 39 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEI 39 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999999999999987654
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-09 Score=107.62 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
|+.+||+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~ 57 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence 3468999999999999999999999999999998743
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-09 Score=105.53 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc-ceec---chhhh-----------hhcCc---------ccccc-
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH-MVFT---PLLAS-----------TCVGT---------LEFRS- 115 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~-~~~~---~~~~~-----------~~~~~---------~~~~~- 115 (436)
..+||+|||||+||++||..|++.|.+|+|||+... +... |...+ ...+. ..+..
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 358999999999999999999999999999998742 1110 10000 00000 00000
Q ss_pred -------c-----cc---chhh-cchhhhcCCCcEEEEeEeEeEeCCCCEEE-EEEecCCcccCCCCceeeeccEEEEeC
Q 013810 116 -------V-----AE---PIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVH-CETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 116 -------~-----~~---~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~-~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
. .. .+.. +...+....++.++.++|+.+..+++.+. +. ..+|. .+.+|+||+||
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~-t~~G~--------~i~Ad~VVLAT 170 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVT-VRSGR--------AIQAKAAILAC 170 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEE-ETTSC--------EEEEEEEEECC
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEE-ECCCc--------EEEeCEEEECc
Confidence 0 00 1111 11122223588888888988877666654 33 34565 89999999999
Q ss_pred CCCCCCCCCCC
Q 013810 179 GAEASTFGIHG 189 (436)
Q Consensus 179 G~~~~~~~i~g 189 (436)
|..+..+.++|
T Consensus 171 G~~s~~~i~~G 181 (641)
T 3cp8_A 171 GTFLNGLIHIG 181 (641)
T ss_dssp TTCBTCEEEET
T ss_pred CCCCCccceee
Confidence 99876554444
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.4e-09 Score=99.62 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++||+|||||+||+++|..|++.|++|+|||+.+..
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~ 41 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE 41 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999987643
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-08 Score=96.23 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=33.8
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+..++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457999999999999999999999999999998764
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.2e-09 Score=103.80 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=97.4
Q ss_pred eccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHH-HHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHH
Q 013810 170 SYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEI-RRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (436)
Q Consensus 170 ~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~ 247 (436)
.||.+++++|++++.+++++.+ +.++......+.... ..++... ..... ......+|+|||||++|+.+|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~dVvIVGgG~aGl~aA~ 109 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQP-VYQQG------QACTNTKCLVVGAGPCGLRAAV 109 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSG-GGGGG------TTTTTCEEEEECCSHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccc-cccCc------cccCCCCEEEECccHHHHHHHH
Confidence 4788999999998776666544 344455455554443 1111100 00000 0122348999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------ccc----------------------------HHHHHHHHHH
Q 013810 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD----------------------------DRLRHYATTQ 293 (436)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------~~~----------------------------~~~~~~~~~~ 293 (436)
.|++.| .+|+|+++.+.+. ..+ .++.+.+.+.
T Consensus 110 ~La~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 175 (497)
T 2bry_A 110 ELALLG--------------ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKV 175 (497)
T ss_dssp HHHHTT--------------CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHH
T ss_pred HHHHCC--------------CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHH
Confidence 999876 8999999853221 000 4555667777
Q ss_pred HHhcCCEEEecc-eEEEeC-----C--eEEE--c-CC--cEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGI-VKDVDS-----Q--KLIL--N-DG--TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~-----~--~v~~--~-~g--~~i~~D~vi~a~G~~p~ 336 (436)
+++.||+++.++ |.+++. + .|.+ . +| +++.+|.||.|+|..+.
T Consensus 176 ~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 176 ALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp HHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred HHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 888899999994 888863 1 4555 3 56 47999999999998775
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.4e-09 Score=100.30 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||+||+++|..|++.|++|+|||+.+
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4799999999999999999999999999999975
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=95.88 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..++||+|||||++|+++|+.|++.|++|+|||+.+..
T Consensus 21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58 (407)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 34689999999999999999999999999999997653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-08 Score=96.13 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 357999999999999999999999999999999765
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-09 Score=110.93 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..+||+|||||+||++||..|++.|++|+|||+.+...
T Consensus 45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g 82 (623)
T 3pl8_A 45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 82 (623)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence 35799999999999999999999999999999987643
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-08 Score=94.55 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~~ 97 (436)
+||+|||||++|+++|+.|++ .|++|+|||+++..
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~ 39 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS 39 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSS
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCC
Confidence 589999999999999999999 99999999998643
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.8e-08 Score=92.63 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCC--cEEecceEEEecCCCCchhcccC-CC
Q 013810 283 DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDG--TEVPYGLLVWSTGVGPSTLVKSL-DL 344 (436)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g--~~i~~D~vi~a~G~~p~~~~~~~-~l 344 (436)
+..+.+.+.+.+++.|++++.++ |+++.. + .|.+.+| .++.+|.||+|+|.....+++.+ |+
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~ 219 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGI 219 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETS
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCC
Confidence 35777888888999999999884 888753 2 3566677 47999999999998876666666 54
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-08 Score=99.57 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~ 40 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPW 40 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47999999999999999999999999999999764
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-08 Score=98.50 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|+|||||++||++|+.|++.|++|+|||+.+.
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~ 39 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG 39 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 357999999999999999999999999999998764
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-08 Score=100.18 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++||+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~ 84 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEP 84 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence 4579999999999999999999999999999987543
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.4e-08 Score=94.34 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 58999999999999999999999999999987643
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-08 Score=91.63 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=34.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..||+|||||||||+||..|++.|++|+|||+.+..+
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G 38 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG 38 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 3789999999999999999999999999999987654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.58 E-value=9.2e-08 Score=92.42 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 36899999999999999999999999999998764
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.5e-08 Score=97.41 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++||+|||||+||+++|..|++.|++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 4799999999999999999999999999999986
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.4e-08 Score=97.05 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||||+|||+||+.|++.|++|+|||+.+..
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 161 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 161 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 579999999999999999999999999999998754
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=87.21 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~ 97 (436)
.+||+|||||+||++||+.|++. |++|+|||+.+..
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~ 116 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP 116 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence 57999999999999999999997 9999999998654
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.1e-07 Score=90.96 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||+|||||+|||+||..|++.|++|+|||+.+..
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~ 161 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 161 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999998754
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6.1e-08 Score=93.19 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~ 50 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 50 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 34799999999999999999999999999999875
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=91.46 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 4 ~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 4 EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35799999999999999999999999999999874
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=91.88 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
..+||||||||++|+++|+.|++.|+ +|+|||+.+.
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 45799999999999999999999999 9999998754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=94.49 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
++++|+||||||+||++|..|++.|++|+|||+.+..
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 46 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVER 46 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 4589999999999999999999999999999987643
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=7.3e-08 Score=94.33 Aligned_cols=94 Identities=22% Similarity=0.419 Sum_probs=71.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Cccc---------HHHHHHHHHHHHhcC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSG 298 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~~~---------~~~~~~~~~~l~~~g 298 (436)
|+|||||+|+.|+.+|..|++.+ ++.+|+|+++.+.. |.+. .++...+.+.+++.|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~------------~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~g 70 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLM------------PDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFN 70 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHC------------TTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGT
T ss_pred CcEEEECCCHHHHHHHHHHhccC------------cCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCC
Confidence 38999999999999999998654 34899999986522 1110 111111234566789
Q ss_pred CEEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+++++|+. +.|++++|+++++|.+|+|+|.++.
T Consensus 71 v~~i~~~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 71 IEFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EEEECSCEEEEETTTTEEEETTCCEEECSEEEECCCCEEE
T ss_pred cEEEEeEEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc
Confidence 9999999999975 5799999999999999999998653
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=94.15 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..++|+||||||+||++|..|++.|++|+|||+.+..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~ 47 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQR 47 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4589999999999999999999999999999987543
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=94.32 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccC------CCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~------g~~v~lie~~~~~ 97 (436)
+.+||+|||||+||+++|+.|++. |++|+|||+.+..
T Consensus 34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~ 76 (584)
T 2gmh_A 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76 (584)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCC
Confidence 348999999999999999999998 9999999998654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.8e-07 Score=95.48 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+|||||+||+++|+.|++.|.+|+|||+.+
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34899999999999999999999999999999864
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.6e-08 Score=93.28 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++||+|||||++|+++|++|+ +|++|+|||+.+..
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 4589999999999999999999 59999999998543
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=91.35 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~ 97 (436)
..++|+|||||++|+++|..|++.|++ |+|||+.+..
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 40 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence 357999999999999999999999999 9999987653
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-07 Score=95.67 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||||||||+|||+||+.|++.|.+|+|||+.+..
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~ 156 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3579999999999999999999999999999998754
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-07 Score=90.60 Aligned_cols=95 Identities=25% Similarity=0.312 Sum_probs=71.1
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--CcccHHH---------HHHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--SSFDDRL---------RHYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--~~~~~~~---------~~~~~~~l~~~g 298 (436)
+|||+|||+|+.|+.+|..|.+.+ ++.+|+|+++.+.. ......+ ...-.+.+.++|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~------------~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~g 69 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHG 69 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTT
T ss_pred cCEEEEECCcHHHHHHHHHHHhcC------------cCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCC
Confidence 469999999999999999997654 34799999986421 1110110 001123456689
Q ss_pred CEEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.++++.|+. +.+.+.+|+++.+|.+++|+|.+++
T Consensus 70 v~~i~~~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~ 109 (401)
T 3vrd_B 70 IQVVHDSALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL 109 (401)
T ss_dssp CEEECSCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEEeEEEEEEccCcEEEecccceeecceeeeccCCccc
Confidence 9999999999975 5688899999999999999999876
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.6e-07 Score=89.82 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++||+|||||++|+++|+.|++.|++|+|||+...
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 37999999999999999999999999999998753
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.5e-07 Score=86.63 Aligned_cols=91 Identities=18% Similarity=0.404 Sum_probs=71.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHH-------------HHHHHHHhcC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLSKSG 298 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~-------------~~~~~l~~~g 298 (436)
+|+|||+|+.|+.+|..|.. .+.+|+|+++++.++...+.+.. ...+.+++.|
T Consensus 11 ~~vIvGgG~AGl~aA~~L~~--------------~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~ 76 (385)
T 3klj_A 11 KILILGAGPAGFSAAKAALG--------------KCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNN 76 (385)
T ss_dssp SEEEECCSHHHHHHHHHHTT--------------TCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTT
T ss_pred CEEEEcCcHHHHHHHHHHhC--------------CCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCC
Confidence 89999999999999999943 34899999997544322222222 2345667789
Q ss_pred CEEEec-ceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~-~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+ +|++++. ..|++++|+++.+|.+|+|+|.+|.
T Consensus 77 i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~ 117 (385)
T 3klj_A 77 IKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIAN 117 (385)
T ss_dssp CEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcC
Confidence 999998 5998875 5788999999999999999998876
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.9e-07 Score=89.08 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CC-CeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SL-YDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g-~~v~lie~~~ 95 (436)
.++||+|||||++|+++|..|++ .| ++|+|||+.+
T Consensus 20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 35799999999999999999999 99 9999999876
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=92.59 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~ 95 (436)
.++|+|||||+||+++|..|++ .|++|+|||+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 5799999999999999999999 999999999865
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-07 Score=92.16 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+. +. . . ..+........+..++.++.+ +|
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l-----~~-----~-~----~~~~~~l~~~l~~~Gv~i~~~~~V 231 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRIL-----PT-----M-D----LEVSRAAERVFKKQGLTIRTGVRV 231 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-----TT-----S-C----HHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccc-----cc-----c-C----HHHHHHHHHHHHHCCCEEEECCEE
Confidence 3789999999999999999999999999999986531 10 0 0 011111112233457888775 88
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
+.++.+.+.+.+.. .++. ++.+|.||+|+|..|+.+.
T Consensus 232 ~~i~~~~~~v~v~~-~~g~--------~i~~D~vv~A~G~~p~~~~ 268 (455)
T 2yqu_A 232 TAVVPEAKGARVEL-EGGE--------VLEADRVLVAVGRRPYTEG 268 (455)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEECCTT
T ss_pred EEEEEeCCEEEEEE-CCCe--------EEEcCEEEECcCCCcCCCC
Confidence 88887666665543 3454 7999999999999887643
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.7e-07 Score=89.80 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+... . . ...+........+..++.++.+ +|
T Consensus 149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~----~-----~~~~~~~l~~~l~~~gv~i~~~~~v 214 (447)
T 1nhp_A 149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV-----Y----L-----DKEFTDVLTEEMEANNITIATGETV 214 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----T----C-----CHHHHHHHHHHHHTTTEEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc-----c----C-----CHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 479999999999999999999999999999998652110 0 0 0112222222345578998885 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+...+.. ++. ++.+|.||+|+|.+|+.+
T Consensus 215 ~~i~~~~~v~~v~~--~~~--------~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 215 ERYEGDGRVQKVVT--DKN--------AYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp EEEECSSBCCEEEE--SSC--------EEECSEEEECSCEEESCG
T ss_pred EEEEccCcEEEEEE--CCC--------EEECCEEEECcCCCCChH
Confidence 88886633222222 444 799999999999988754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-07 Score=82.67 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=72.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----------CCc----ccHHHHHHHHHHHHhc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----------LSS----FDDRLRHYATTQLSKS 297 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~----------l~~----~~~~~~~~~~~~l~~~ 297 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++... .+. ...++.+.+.+.+.+.
T Consensus 4 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (297)
T 3fbs_A 4 DVIIIGGSYAGLSAALQLGRAR--------------KNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERY 69 (297)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 7999999999999999999866 89999997421 111 1246667777777776
Q ss_pred -CCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 298 -GVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 -gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++++.+++.+++.+ .|.+.+|+++.+|.||+|+|..|.
T Consensus 70 ~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~ 113 (297)
T 3fbs_A 70 PTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE 113 (297)
T ss_dssp TTEEEEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE
T ss_pred CCeEEEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC
Confidence 799988888888643 577788989999999999999876
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=92.88 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.++|+||||||+|+++|..|++.|++|+|||+.+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 479999999999999999999999999999987643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-07 Score=90.01 Aligned_cols=104 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+.+.- . . ...+........+..++.++.+ +|
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~-----~-----~~~~~~~l~~~l~~~gV~i~~~~~v 233 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-----Q-----G-----DPETAALLRRALEKEGIRVRTKTKA 233 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----T-----S-----CHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-----c-----c-----CHHHHHHHHHHHHhcCCEEEcCCEE
Confidence 36899999999999999999999999999999865211 0 0 0111122222234468888876 88
Q ss_pred EeEeCCCCEEEEEEecC--CcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTD--ELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~--g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
+.++.+.+.+.+....+ |+ +.++.+|.||+|+|.+|+...
T Consensus 234 ~~i~~~~~~~~v~~~~~~~g~------~~~i~~D~vv~a~G~~p~~~~ 275 (464)
T 2eq6_A 234 VGYEKKKDGLHVRLEPAEGGE------GEEVVVDKVLVAVGRKPRTEG 275 (464)
T ss_dssp EEEEEETTEEEEEEEETTCCS------CEEEEESEEEECSCEEESCTT
T ss_pred EEEEEeCCEEEEEEeecCCCc------eeEEEcCEEEECCCcccCCCC
Confidence 88876655544432213 42 126899999999999887653
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=3.4e-07 Score=89.71 Aligned_cols=94 Identities=27% Similarity=0.444 Sum_probs=72.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Cc---------ccHHHHHHHHHHHHhcCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SS---------FDDRLRHYATTQLSKSGV 299 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~---------~~~~~~~~~~~~l~~~gV 299 (436)
+|+|||||+.|+.+|..|++.. ..+.+|+|+++.+.. +. ...++...+.+.+++.||
T Consensus 6 ~vvIIGgG~aGl~aA~~L~~~~-----------~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv 74 (437)
T 3sx6_A 6 HVVILGAGTGGMPAAYEMKEAL-----------GSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGI 74 (437)
T ss_dssp EEEEECCSTTHHHHHHHHHHHH-----------GGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTC
T ss_pred cEEEECCcHHHHHHHHHHhccC-----------CCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCC
Confidence 8999999999999999998732 124899999996532 11 112222334567778899
Q ss_pred EEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+++++++. +.|.+++|+++.+|.+|+|+|.+|+
T Consensus 75 ~~~~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~ 113 (437)
T 3sx6_A 75 HFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA 113 (437)
T ss_dssp EEECSCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC
T ss_pred EEEEeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC
Confidence 999888988876 4788899999999999999999887
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-07 Score=86.96 Aligned_cols=101 Identities=17% Similarity=0.204 Sum_probs=71.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+... . . ...+........+..++.++.+ +|
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~-----~----~-----~~~~~~~l~~~l~~~GV~i~~~~~v 217 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR-----V----A-----GEALSEFYQAEHRAHGVDLRTGAAM 217 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----T----S-----CHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh-----h----c-----CHHHHHHHHHHHHhCCCEEEECCEE
Confidence 578999999999999999999999999999998763210 0 0 0111222222344568888865 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.++..+......+|+ ++.+|.||+|+|..|+.
T Consensus 218 ~~i~~~~~~v~~v~l~dG~--------~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 218 DCIEGDGTKVTGVRMQDGS--------VIPADIVIVGIGIVPCV 253 (415)
T ss_dssp EEEEESSSBEEEEEESSSC--------EEECSEEEECSCCEESC
T ss_pred EEEEecCCcEEEEEeCCCC--------EEEcCEEEECCCCccCh
Confidence 8888765544322334676 89999999999998765
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-07 Score=91.64 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=69.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+.- .. . ..+........+..++.++.+ +|
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~~---------~----~~~~~~l~~~l~~~gv~i~~~~~v 235 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP--TY---------D----SELTAPVAESLKKLGIALHLGHSV 235 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST--TS---------C----HHHHHHHHHHHHHHTCEEETTCEE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc--cc---------C----HHHHHHHHHHHHHCCCEEEECCEE
Confidence 46899999999999999999999999999999876310 00 0 011111112233457888765 88
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
+.++. ++ +.+. ..+|+ +.++.+|.||+|+|.+|+.+.
T Consensus 236 ~~i~~-~~-v~v~-~~~G~------~~~i~~D~vv~a~G~~p~~~~ 272 (458)
T 1lvl_A 236 EGYEN-GC-LLAN-DGKGG------QLRLEADRVLVAVGRRPRTKG 272 (458)
T ss_dssp EEEET-TE-EEEE-CSSSC------CCEECCSCEEECCCEEECCSS
T ss_pred EEEEe-CC-EEEE-ECCCc------eEEEECCEEEECcCCCcCCCC
Confidence 88887 44 5554 22342 117899999999999887653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-07 Score=92.31 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 297 (689)
T 3pvc_A 263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADA 297 (689)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35899999999999999999999999999999864
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=8.8e-07 Score=85.24 Aligned_cols=100 Identities=25% Similarity=0.360 Sum_probs=70.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+... . . . ..+........+..++.++.+ +|
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~-----~----~-~----~~~~~~l~~~l~~~gv~i~~~~~v 210 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG-----L----L-H----PAAAKAVQAGLEGLGVRFHLGPVL 210 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----T----S-C----HHHHHHHHHHHHTTTCEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhc-----c----c-C----HHHHHHHHHHHHHcCCEEEeCCEE
Confidence 478999999999999999999999999999987652110 0 0 0 111122222234568888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+.+.+.. .+|. ++.+|.||+|+|..|+.
T Consensus 211 ~~i~~~~~~~~v~~-~~g~--------~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 211 ASLKKAGEGLEAHL-SDGE--------VIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEECC
T ss_pred EEEEecCCEEEEEE-CCCC--------EEECCEEEECcCCCcCH
Confidence 88876555554432 3565 79999999999988765
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-07 Score=89.52 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
.+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~ 71 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 47999999999999999999999 99999999864
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.35 E-value=7e-07 Score=86.55 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=71.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... . . ...+........+..++.++.+ +|
T Consensus 142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~-----~----~-----~~~~~~~l~~~l~~~GV~i~~~~~v 207 (404)
T 3fg2_P 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMAR-----V----V-----TPEISSYFHDRHSGAGIRMHYGVRA 207 (404)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----T----S-----CHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhh-----c----c-----CHHHHHHHHHHHHhCCcEEEECCEE
Confidence 468999999999999999999999999999988653210 0 0 0111222222334568888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+++.+......+|+ ++.+|.||+|+|..|+.
T Consensus 208 ~~i~~~~~~v~~V~~~dG~--------~i~aD~Vv~a~G~~p~~ 243 (404)
T 3fg2_P 208 TEIAAEGDRVTGVVLSDGN--------TLPCDLVVVGVGVIPNV 243 (404)
T ss_dssp EEEEEETTEEEEEEETTSC--------EEECSEEEECCCEEECC
T ss_pred EEEEecCCcEEEEEeCCCC--------EEEcCEEEECcCCccCH
Confidence 8887655544333345676 89999999999998765
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=80.66 Aligned_cols=91 Identities=13% Similarity=0.243 Sum_probs=73.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CC--------CCcc----cHHHHHHHHHHHHh
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LSSF----DDRLRHYATTQLSK 296 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~--------l~~~----~~~~~~~~~~~l~~ 296 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++. .. .+.+ ..++.+.+.+.+++
T Consensus 17 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (323)
T 3f8d_A 17 DVIIVGLGPAAYGAALYSARYM--------------LKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEK 82 (323)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999765 889999985 10 1221 24677777888888
Q ss_pred cCCEEEecceEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|++++..++.+++.+ .+.+.+|+++.+|.+|+|+|..|.
T Consensus 83 ~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~ 126 (323)
T 3f8d_A 83 YEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR 126 (323)
T ss_dssp TTCCEEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC
T ss_pred cCCEEEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc
Confidence 9999998768888653 467778889999999999999876
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.9e-06 Score=80.67 Aligned_cols=91 Identities=20% Similarity=0.283 Sum_probs=72.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCcc-----cHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~-----~~~~~~~~~~~l 294 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++... .+.+ ..++.+.+.+.+
T Consensus 10 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (325)
T 2q7v_A 10 DVVIIGGGPAGLTAAIYTGRAQ--------------LSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQA 75 (325)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998765 89999998621 1122 245667777888
Q ss_pred HhcCCEEEecceEEEeCC-------eEEEcCCcEEecceEEEecCCCCc
Q 013810 295 SKSGVRLVRGIVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 295 ~~~gV~i~~~~v~~i~~~-------~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++.|++++.+++.+++.. .|.+.+|+++.+|.+|+|+|..|.
T Consensus 76 ~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 124 (325)
T 2q7v_A 76 EKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR 124 (325)
T ss_dssp HHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 889999998777777532 466778889999999999998775
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.2e-07 Score=87.90 Aligned_cols=103 Identities=16% Similarity=0.204 Sum_probs=69.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+. +. . ...+........+..++.++.+ +|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----~~-----~-----~~~~~~~l~~~l~~~gv~i~~~~~v 234 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-----SG-----F-----EKQMAAIIKKRLKKKGVEVVTNALA 234 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-----TT-----S-----CHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-----cc-----c-----CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4789999999999999999999999999999986531 10 0 0111111122234468888875 88
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+....++. ..++.+|.||+|+|.+|+..
T Consensus 235 ~~i~~~~~~~~v~~~~~g~------~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 235 KGAEEREDGVTVTYEANGE------TKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp EEEEEETTEEEEEEEETTE------EEEEEESEEEECSCEEESCS
T ss_pred EEEEEeCCeEEEEEEeCCc------eeEEEcCEEEECcCCCcccC
Confidence 8887655444433211221 11789999999999988764
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=81.69 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~ 97 (436)
.+||+|||||+||++||..|++. |++|+|+|+.+..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ 102 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence 46999999999999999999998 9999999997654
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.2e-07 Score=88.09 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ ..+........+..++.++.+ +|
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~~-----~~~~~~l~~~l~~~gv~i~~~~~v 247 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS----------MD-----GEVAKATQKFLKKQGLDFKLSTKV 247 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS----------SC-----HHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc----------cC-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 478999999999999999999999999999998652110 00 111122222234468888875 78
Q ss_pred EeEeC--CCCEEEEEEec--CCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDT--DNHVVHCETVT--DELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~--~~~~v~~~~~~--~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++. +.+.+.+.... ++. ..++.+|.||+|+|.+|+..
T Consensus 248 ~~i~~~~~~~~~~v~~~~~~~g~------~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 248 ISAKRNDDKNVVEIVVEDTKTNK------QENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp EEEEEETTTTEEEEEEEETTTTE------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEecCCCeEEEEEEEcCCCC------ceEEECCEEEECCCCCcCCC
Confidence 88876 44444333211 121 11789999999999988764
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.4e-07 Score=86.11 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. . . ...+........+..++.++.+ +|
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-----~----~-----~~~~~~~l~~~l~~~GV~i~~~~~v 210 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----A----A-----PATLADFVARYHAAQGVDLRFERSV 210 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-----T----S-----CHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc-----c----c-----CHHHHHHHHHHHHHcCcEEEeCCEE
Confidence 478999999999999999999999999999998653110 0 0 0011111122234568888886 88
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++ ++ .+.+ .+|. ++.+|.||+|+|..|+.
T Consensus 211 ~~i~-~~-~v~~---~~g~--------~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 211 TGSV-DG-VVLL---DDGT--------RIAADMVVVGIGVLAND 241 (408)
T ss_dssp EEEE-TT-EEEE---TTSC--------EEECSEEEECSCEEECC
T ss_pred EEEE-CC-EEEE---CCCC--------EEEcCEEEECcCCCccH
Confidence 8888 43 5544 3665 89999999999988764
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.3e-07 Score=87.01 Aligned_cols=94 Identities=16% Similarity=0.278 Sum_probs=71.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---Cc---------ccHHHHHHHHHHHHhcCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SS---------FDDRLRHYATTQLSKSGV 299 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---~~---------~~~~~~~~~~~~l~~~gV 299 (436)
+|+|||||++|+.+|..|++.. ..+.+|+++++.+.. +. ...++...+.+.+++.||
T Consensus 3 ~VvIIGgG~aGl~aA~~L~~~~-----------~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 71 (409)
T 3h8l_A 3 KVLVLGGRFGALTAAYTLKRLV-----------GSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGI 71 (409)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----------GGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTC
T ss_pred eEEEECCCHHHHHHHHHHHhhC-----------CCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCe
Confidence 7999999999999999998721 123899999986411 11 112333446667788899
Q ss_pred EEEecceEEEeCC--eEEEcCCcE----EecceEEEecCCCCc
Q 013810 300 RLVRGIVKDVDSQ--KLILNDGTE----VPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~v~~i~~~--~v~~~~g~~----i~~D~vi~a~G~~p~ 336 (436)
+++.+++.+++.+ .|.+.+++. +.+|.||+|+|.+|+
T Consensus 72 ~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 72 QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp EEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred EEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 9999888888754 788877754 999999999999886
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=7.5e-07 Score=87.64 Aligned_cols=100 Identities=18% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+. .. .+ ..+.+......+..++.++.+ +|
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----~~-----~~-----~~~~~~l~~~l~~~Gv~i~~~~~v 231 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-----PS-----FD-----PMISETLVEVMNAEGPQLHTNAIP 231 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-----TT-----SC-----HHHHHHHHHHHHHHSCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh-----hh-----hh-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4689999999999999999999999999999876521 00 00 011111122233457888776 78
Q ss_pred EeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+. +.+.+. ..+|+ ++.+|.||+|+|.+|+..
T Consensus 232 ~~i~~~~~~~~~v~-~~~g~--------~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 232 KAVVKNTDGSLTLE-LEDGR--------SETVDCLIWAIGREPAND 268 (450)
T ss_dssp EEEEECTTSCEEEE-ETTSC--------EEEESEEEECSCEEESCT
T ss_pred EEEEEeCCcEEEEE-ECCCc--------EEEcCEEEECCCCCcCCC
Confidence 8887653 223332 23565 789999999999988764
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=90.07 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
.++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~ 67 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG 67 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 4799999999999999999999 9999999998754
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-06 Score=79.71 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=69.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------------Ccc-------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------------SSF------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----------------------~~~------- 282 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ +.+
T Consensus 5 ~vvIIG~G~aGl~~A~~l~~~g--------------~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 4a9w_A 5 DVVVIGGGQSGLSAGYFLRRSG--------------LSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQG 70 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHSS--------------CCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCcc
Confidence 7999999999999999998765 899999985321 111
Q ss_pred ----cHHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce---EEEcCCcEEecceEEEecCCCC
Q 013810 283 ----DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 283 ----~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p 335 (436)
..++.+.+.+.+++.|++++.+ +|++++. +. |.+.+| ++.+|.||+|+|...
T Consensus 71 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~ 132 (357)
T 4a9w_A 71 PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG 132 (357)
T ss_dssp SSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred CCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence 0567788888888999999988 4887753 44 555666 899999999999643
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-06 Score=86.32 Aligned_cols=100 Identities=19% Similarity=0.280 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. ... . ...+........+..++.++.+ +|
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l-----~~~----~-----~~~~~~~l~~~l~~~GV~i~~~~~v 259 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCL-----AGY----Y-----DRDLTDLMAKNMEEHGIQLAFGETV 259 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-----TTT----S-----CHHHHHHHHHHHHTTTCEEEETCCE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchh-----hhH----H-----HHHHHHHHHHHHHhCCeEEEeCCEE
Confidence 4789999999999999999999999999999986521 100 0 0112222222345578998876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.+...+.. ++. ++.+|.||+|+|.+|+..
T Consensus 260 ~~i~~~~~v~~v~~--~g~--------~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 260 KEVAGNGKVEKIIT--DKN--------EYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp EEEECSSSCCEEEE--SSC--------EEECSEEEECCCEEECCG
T ss_pred EEEEcCCcEEEEEE--CCc--------EEECCEEEECCCCCcChH
Confidence 88876433212222 455 899999999999987654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=86.77 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.-. .. ...+........+..++.++.+ +|
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------~~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 243 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGV---------GI-----DMEISKNFQRILQKQGFKFKLNTKV 243 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCS---------SC-----CHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCc---------cc-----CHHHHHHHHHHHHHCCCEEEeCceE
Confidence 378999999999999999999999999999998653110 00 0111111222234468888775 78
Q ss_pred EeEeCCCCE-EEEEE----ecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHV-VHCET----VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~-v~~~~----~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+. +.+.. ..++. ++.+|.||+|+|.+|+..
T Consensus 244 ~~i~~~~~~~~~v~~~~~~~~~~~--------~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 244 TGATKKSDGKIDVSIEAASGGKAE--------VITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp EEEEECTTSCEEEEEEETTSCCCE--------EEEESEEEECSCEEECCT
T ss_pred EEEEEcCCceEEEEEEecCCCCce--------EEEcCEEEECcCCCcCCC
Confidence 888765543 44331 12333 789999999999988754
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=81.04 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=73.0
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC----C-------------CCcc-----cHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE----I-------------LSSF-----DDRLRH 288 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~----~-------------l~~~-----~~~~~~ 288 (436)
.+|+|||+|+.|+.+|..|++.+ .+|+++++.+ . .+.+ ..++.+
T Consensus 23 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (338)
T 3itj_A 23 NKVTIIGSGPAAHTAAIYLARAE--------------IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMD 88 (338)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHH
Confidence 48999999999999999999866 8999999832 0 1122 247778
Q ss_pred HHHHHHHhcCCEEEecceEEEeC--CeEEE-----cCCcEEecceEEEecCCCCc
Q 013810 289 YATTQLSKSGVRLVRGIVKDVDS--QKLIL-----NDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 289 ~~~~~l~~~gV~i~~~~v~~i~~--~~v~~-----~~g~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+++.|++++.+++.+++. +.+.+ .++.++.+|.+|+|+|..|.
T Consensus 89 ~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 89 RMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 143 (338)
T ss_dssp HHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC
T ss_pred HHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC
Confidence 88888999999999988888764 34444 46778999999999998765
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=78.84 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=71.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCC------------CCcc-----cHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (436)
+|+|||+|+.|+.+|..|++.+ . +|+++++... .+.+ ..++.+.+.+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 68 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGG--------------VKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQ 68 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred eEEEECccHHHHHHHHHHHHCC--------------CCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHH
Confidence 6999999999999999998765 7 9999998521 1222 24566777788
Q ss_pred HHhcCCEEEecceEEEe--CC--eEEEcCCcEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.|++++..++.+++ .+ .+.+.+|+++.+|.||+|+|..|.
T Consensus 69 ~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~ 115 (311)
T 2q0l_A 69 CFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK 115 (311)
T ss_dssp HHTTSCEEECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC
Confidence 88889999987677775 34 466778889999999999998765
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=86.53 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ ..+........+..++.++.+ +|
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~~-----~~-----~~~~~~l~~~l~~~gv~i~~~~~v 235 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL-----PN-----ED-----ADVSKEIEKQFKKLGVTILTATKV 235 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-----TT-----SC-----HHHHHHHHHHHHHHTCEEECSCEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc-----cc-----cC-----HHHHHHHHHHHHHcCCEEEeCcEE
Confidence 4789999999999999999999999999999986521 10 00 111111122233457888775 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+....+|+ ..++.+|.||+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~g~------~~~~~~D~vv~a~G~~p~~~ 274 (464)
T 2a8x_A 236 ESIADGGSQVTVTVTKDGV------AQELKAEKVLQAIGFAPNVE 274 (464)
T ss_dssp EEEEECSSCEEEEEESSSC------EEEEEESEEEECSCEEECCS
T ss_pred EEEEEcCCeEEEEEEcCCc------eEEEEcCEEEECCCCCccCC
Confidence 8887655444433212342 12789999999999988764
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=85.53 Aligned_cols=101 Identities=17% Similarity=0.297 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .. .+ ..+........+..++.++.+ +|
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-----~~----~~-----~~~~~~l~~~l~~~GV~i~~~~~v 214 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-----RV----TA-----PPVSAFYEHLHREAGVDIRTGTQV 214 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----TT----SC-----HHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-----ch----hh-----HHHHHHHHHHHHhCCeEEEeCCEE
Confidence 47899999999999999999999999999998765211 00 00 011111111233457888776 78
Q ss_pred EeEeC--CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~--~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++. +++.+......+|. .+.+|.||+|+|..|+.
T Consensus 215 ~~i~~~~~~~~v~~v~~~~G~--------~i~~D~Vv~a~G~~p~~ 252 (431)
T 1q1r_A 215 CGFEMSTDQQKVTAVLCEDGT--------RLPADLVIAGIGLIPNC 252 (431)
T ss_dssp EEEEECTTTCCEEEEEETTSC--------EEECSEEEECCCEEECC
T ss_pred EEEEeccCCCcEEEEEeCCCC--------EEEcCEEEECCCCCcCc
Confidence 88875 43333222234665 79999999999988764
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=85.30 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .. . ...+........+..++.++.+ +|
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~----~-----~~~~~~~l~~~l~~~Gv~i~~~~~v 214 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-----KY----F-----DKEFTDILAKDYEAHGVNLVLGSKV 214 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-----TT----S-----CHHHHHHHHHHHHHTTCEEEESSCE
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-----hh----h-----hhhHHHHHHHHHHHCCCEEEcCCee
Confidence 46899999999999999999999999999998765211 00 0 0111222222344568888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+++.+..... +|+ ++.+|.||+|+|.+|+..
T Consensus 215 ~~i~~~~~~v~~v~~-~g~--------~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 215 AAFEEVDDEIITKTL-DGK--------EIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp EEEEEETTEEEEEET-TSC--------EEEESEEEECCCEEECCG
T ss_pred EEEEcCCCeEEEEEe-CCC--------EEECCEEEECcCCCCCHH
Confidence 888764444432222 555 799999999999987653
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=83.02 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=71.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.-. .. ...+.+......+..++.++.+ +|
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~---------~~-----d~~~~~~l~~~l~~~GV~i~~~~~v 212 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK---------YF-----DKEMVAEVQKSLEKQAVIFHFEETV 212 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT---------TC-----CHHHHHHHHHHHHTTTEEEEETCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc---------cC-----CHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 478999999999999999999999999999998653110 00 0112222222345678998875 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++..++.+.+.. +++ ++.+|.||+|+|.+|+...
T Consensus 213 ~~i~~~~~~v~v~~--~~g--------~i~aD~Vv~A~G~~p~~~~ 248 (452)
T 3oc4_A 213 LGIEETANGIVLET--SEQ--------EISCDSGIFALNLHPQLAY 248 (452)
T ss_dssp EEEEECSSCEEEEE--SSC--------EEEESEEEECSCCBCCCSS
T ss_pred EEEEccCCeEEEEE--CCC--------EEEeCEEEECcCCCCChHH
Confidence 88875555554432 333 7899999999999887653
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-06 Score=85.83 Aligned_cols=100 Identities=13% Similarity=0.209 Sum_probs=69.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +.+ + ..+........+..++.++.+ +|
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l--~~~--------d-----~~~~~~l~~~l~~~gv~i~~~~~v 240 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL--RKF--------D-----ESVINVLENDMKKNNINIVTFADV 240 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC--TTS--------C-----HHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC--ccc--------c-----hhhHHHHHHHHHhCCCEEEECCEE
Confidence 4789999999999999999999999999999976532 000 0 111111222234468888776 78
Q ss_pred EeEeCCC-CEEEEEEecCCcccCCCCcee-eeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDN-HVVHCETVTDELRTLEPWKFK-ISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~-~~v~~~~~~~g~~~~~~~~~~-~~~d~lViAtG~~~~~~ 185 (436)
..++.+. +.+.+. ..+|+ + +.+|.||+|+|.+|+..
T Consensus 241 ~~i~~~~~~~~~v~-~~~g~--------~~~~~D~vi~a~G~~p~~~ 278 (500)
T 1onf_A 241 VEIKKVSDKNLSIH-LSDGR--------IYEHFDHVIYCVGRSPDTE 278 (500)
T ss_dssp EEEEESSTTCEEEE-ETTSC--------EEEEESEEEECCCBCCTTT
T ss_pred EEEEEcCCceEEEE-ECCCc--------EEEECCEEEECCCCCcCCC
Confidence 8887543 323333 23564 5 89999999999988763
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.3e-06 Score=78.49 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEE-EeCCCC------------CCccc-----HHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL-IEANEI------------LSSFD-----DRLRHYATTQ 293 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~l-v~~~~~------------l~~~~-----~~~~~~~~~~ 293 (436)
+|+|||+|+.|+.+|..|++.+ .+|++ ++++.+ .+.++ .++...+.+.
T Consensus 6 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~li~e~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (315)
T 3r9u_A 6 DVAIIGGGPAGLSAGLYATRGG--------------LKNVVMFEKGMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQ 71 (315)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT--------------CSCEEEECSSSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CCeEEEEeCCCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHH
Confidence 8999999999999999999866 88999 887421 12222 5677788888
Q ss_pred HHhcCCEEEecceEEE-eC--CeEE--EcCCcEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGIVKDV-DS--QKLI--LNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i-~~--~~v~--~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+++++.+++.++ +. +.+. +..+.++.+|.+|+|+|..|.
T Consensus 72 ~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 119 (315)
T 3r9u_A 72 CMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK 119 (315)
T ss_dssp HTTTCCEEECCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCcEEEEEEEEEEecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC
Confidence 8999999999887777 44 4454 543338999999999998775
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=9.4e-06 Score=77.80 Aligned_cols=91 Identities=24% Similarity=0.276 Sum_probs=71.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
+|+|||+|++|+.+|..|++.+ .+|+++++.+....
T Consensus 13 dVvIVGaG~aGl~~A~~L~~~G--------------~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 78 (379)
T 3alj_A 13 RAEVAGGGFAGLTAAIALKQNG--------------WDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHT 78 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBC
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCC
Confidence 7999999999999999999866 89999998532210
Q ss_pred ---------------c-----------cHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-eEEEcCCcEEecceEEEecCC
Q 013810 282 ---------------F-----------DDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 282 ---------------~-----------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+ ...+.+.+.+.+.+.||+++.++ |++++.+ .|++.+|+++.+|.||.|.|.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~ 158 (379)
T 3alj_A 79 PPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGV 158 (379)
T ss_dssp CSCEEEEETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCT
T ss_pred ccceEEEeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCc
Confidence 0 03445667777888899999984 8877633 677888989999999999998
Q ss_pred CCc
Q 013810 334 GPS 336 (436)
Q Consensus 334 ~p~ 336 (436)
.+.
T Consensus 159 ~s~ 161 (379)
T 3alj_A 159 GSK 161 (379)
T ss_dssp TCH
T ss_pred cHH
Confidence 764
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-07 Score=90.51 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
..+.+.+.+.+++.|++|++++ |++|. ++ +|+++||+++.+|.||++++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 4567778888999999999995 88885 33 4788999999999999987654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.4e-06 Score=85.01 Aligned_cols=103 Identities=18% Similarity=0.149 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .. + ..+.+......+.. +.++.+ +|
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--~~--------d-----~~~~~~l~~~l~~~-V~i~~~~~v 237 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN--LQ--------D-----EEMKRYAEKTFNEE-FYFDAKARV 237 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT--CC--------C-----HHHHHHHHHHHHTT-SEEETTCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc--cC--------C-----HHHHHHHHHHHhhC-cEEEECCEE
Confidence 47899999999999999999999999999999876310 00 0 01111111112233 776654 77
Q ss_pred EeEeCCCCEEEEEEe-cCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+++.+.+... .+|+ +.++.+|.||+|+|..|+...
T Consensus 238 ~~i~~~~~~v~v~~~~~~G~------~~~i~~D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 238 ISTIEKEDAVEVIYFDKSGQ------KTTESFQYVLAATGRKANVDK 278 (492)
T ss_dssp EEEEECSSSEEEEEECTTCC------EEEEEESEEEECSCCEESCSS
T ss_pred EEEEEcCCEEEEEEEeCCCc------eEEEECCEEEEeeCCccCCCC
Confidence 788766555554432 2442 127899999999999887654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=85.50 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- . .+ ..+........+..++.++.+ +|
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~-----~-----~~-----~~~~~~l~~~l~~~gv~i~~~~~v 230 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF-----Q-----FD-----PLLSATLAENMHAQGIETHLEFAV 230 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----T-----SC-----HHHHHHHHHHHHHTTCEEESSCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc-----c-----cC-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 36899999999999999999999999999998865220 0 00 011111122234467888776 68
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+.. .+|+ + ++.+|.||+|+|..|+..
T Consensus 231 ~~i~~~~~~~~v~~-~~G~------~-~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 231 AALERDAQGTTLVA-QDGT------R-LEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp EEEEEETTEEEEEE-TTCC------E-EEEESEEEECSCEEESCT
T ss_pred EEEEEeCCeEEEEE-eCCc------E-EEEcCEEEECCCCCcCCC
Confidence 88876544344432 3442 1 489999999999988764
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.6e-06 Score=80.92 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=70.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHH-------------HHHHHHHhcC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH-------------YATTQLSKSG 298 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~-------------~~~~~l~~~g 298 (436)
+|+|||+|+.|+.+|..|.+.+ ...+|+++++.+..+...+.+.. ...+.+++.+
T Consensus 4 ~vvIIGaG~AGl~aA~~L~~~g------------~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 71 (410)
T 3ef6_A 4 HVAIIGNGVGGFTTAQALRAEG------------FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEAR 71 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT------------CCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTT
T ss_pred CEEEEcccHHHHHHHHHHHccC------------cCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCC
Confidence 7999999999999999998765 22469999996543221111111 1123566789
Q ss_pred CEEEec-ceEEEeC--CeEEEcCCcEEecceEEEecCCCCc
Q 013810 299 VRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 299 V~i~~~-~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
|+++.+ ++..++. ..|.+.+|+++.+|.+|+|+|..|.
T Consensus 72 i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~ 112 (410)
T 3ef6_A 72 IDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR 112 (410)
T ss_dssp CEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred CEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc
Confidence 999999 6988875 4788899999999999999998876
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=86.36 Aligned_cols=99 Identities=10% Similarity=0.152 Sum_probs=68.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+. +. . ...+........+..++.++.+ +|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l-----~~-----~-----~~~~~~~l~~~l~~~gV~i~~~~~v 249 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-----QG-----A-----DRDLVKVWQKQNEYRFDNIMVNTKT 249 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----TT-----S-----CHHHHHHHHHHHGGGEEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc-----cc-----c-----CHHHHHHHHHHHHhcCCEEEECCEE
Confidence 4789999999999999999999999999999986522 10 0 0111222222234567888776 78
Q ss_pred EeEeCCCCEEEEEEecC----CcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTD----ELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~----g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+.+.+.. .+ ++ ++.+|.||+|+|.+|+.
T Consensus 250 ~~i~~~~~~~~v~~-~~~~~~g~--------~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 250 VAVEPKEDGVYVTF-EGANAPKE--------PQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp EEEEEETTEEEEEE-ESSSCCSS--------CEEESCEEECCCEEECG
T ss_pred EEEEEcCCeEEEEE-eccCCCce--------EEEcCEEEECcCCCcCC
Confidence 88876554443332 13 43 68899999999998865
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=86.56 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=70.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+..|..+++.|.+|||+++...+ + +. + .++........+..++.++.+ .+
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L------~----~~-D-----~ei~~~l~~~l~~~gi~~~~~~~v 286 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVL------R----GF-D-----QQCAVKVKLYMEEQGVMFKNGILP 286 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSS------T----TS-C-----HHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccc------c----cc-c-----hhHHHHHHHHHHhhcceeecceEE
Confidence 368999999999999999999999999999875331 1 10 1 112222223345568888776 67
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..+......+.+.. .++. .+.+|.|++|+|-+|+..
T Consensus 287 ~~~~~~~~~~~v~~-~~~~--------~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 287 KKLTKMDDKILVEF-SDKT--------SELYDTVLYAIGRKGDID 322 (542)
T ss_dssp EEEEEETTEEEEEE-TTSC--------EEEESEEEECSCEEESCG
T ss_pred EEEEecCCeEEEEE-cCCC--------eEEEEEEEEcccccCCcc
Confidence 77777667666643 3444 788999999999888764
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=85.97 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC---CCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.++++|||||+.|+.+|..|++. |.+|+||++.+.+. .. .+ ..+........+..++.++.+
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-----~~-----~d-----~~~~~~l~~~l~~~GV~i~~~ 255 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-----RG-----FD-----ETIREEVTKQLTANGIEIMTN 255 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC-----TT-----SC-----HHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc-----cc-----cC-----HHHHHHHHHHHHhCCCEEEeC
Confidence 36899999999999999999998 99999999986532 10 00 111112222234568898876
Q ss_pred -EeEeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 -HCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 -~v~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+|..++.+. +.+.+. ..+|+ ++.+|.||+|+|..|+..
T Consensus 256 ~~v~~i~~~~~~~~~v~-~~~G~--------~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 256 ENPAKVSLNTDGSKHVT-FESGK--------TLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp CCEEEEEECTTSCEEEE-ETTSC--------EEEESEEEECSCEEECCG
T ss_pred CEEEEEEEcCCceEEEE-ECCCc--------EEEcCEEEECCCCccccc
Confidence 788887653 223333 23565 799999999999987653
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.8e-06 Score=85.57 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=68.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
..++|+|||||+.|+.+|..|++.|.+|+|+++.+.+.- .. ...+........+..++.++.+ +
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~~-----~~~~~~~l~~~l~~~Gv~i~~~~~ 249 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT----------IY-----DGDMAEYIYKEADKHHIEILTNEN 249 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS----------SS-----CHHHHHHHHHHHHHTTCEEECSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh----------cC-----CHHHHHHHHHHHHHcCcEEEcCCE
Confidence 347899999999999999999999999999998764211 00 0111112222234467888765 7
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
|..++.+.+...+.. ++. ++.+|.||+|+|..|+..
T Consensus 250 v~~i~~~~~v~~v~~--~~~--------~i~~D~vi~a~G~~p~~~ 285 (480)
T 3cgb_A 250 VKAFKGNERVEAVET--DKG--------TYKADLVLVSVGVKPNTD 285 (480)
T ss_dssp EEEEEESSBEEEEEE--TTE--------EEECSEEEECSCEEESCG
T ss_pred EEEEEcCCcEEEEEE--CCC--------EEEcCEEEECcCCCcChH
Confidence 788876543322322 333 789999999999987653
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.3e-06 Score=79.07 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=71.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------Ccc----cHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYA 290 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----------------~~~----~~~~~~~~ 290 (436)
.+|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ +.+ ..++...+
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQ--------------ASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNL 73 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHH
Confidence 37999999999999999998765 899999985421 111 35677778
Q ss_pred HHHHHhcCCEEEec-ceEEEeC--C---eEEEcCCcEEecceEEEecCC---CCc
Q 013810 291 TTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGV---GPS 336 (436)
Q Consensus 291 ~~~l~~~gV~i~~~-~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~---~p~ 336 (436)
.+.+++.+++++.+ +|.+++. + .|.+.+|+ +.+|.||+|+|. .|.
T Consensus 74 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 74 KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence 88888889999987 5888754 3 46667775 999999999999 554
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-06 Score=85.07 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=77.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------------------------- 279 (436)
.+|+|||+|+.|+.+|..|++.+ .+|+|+++.+..
T Consensus 108 ~DVVIVGgGpaGL~aA~~La~~G--------------~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~ 173 (549)
T 3nlc_A 108 ERPIVIGFGPCGLFAGLVLAQMG--------------FNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGT 173 (549)
T ss_dssp CCCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGT
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CeEEEEEccCcccccccchhcccccccccccccceeccCCccc
Confidence 37999999999999999999866 889999875210
Q ss_pred ------------Ccc------------------------------cHHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--
Q 013810 280 ------------SSF------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-- 312 (436)
Q Consensus 280 ------------~~~------------------------------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-- 312 (436)
+.+ ...+.+.+.+.+++.|++++.++ |+++.. +
T Consensus 174 ~sdgkl~~~i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v 253 (549)
T 3nlc_A 174 FSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQI 253 (549)
T ss_dssp TSCCCCCCCSCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBE
T ss_pred ccCCceEEEeccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEE
Confidence 000 03445566777888899999994 888753 2
Q ss_pred -eEEEcCCcEEecceEEEecCCCCc---hhcccCCCCCC
Q 013810 313 -KLILNDGTEVPYGLLVWSTGVGPS---TLVKSLDLPKS 347 (436)
Q Consensus 313 -~v~~~~g~~i~~D~vi~a~G~~p~---~~~~~~~l~~~ 347 (436)
.|++.+|+++.+|.||+|+|..+. .++...|+...
T Consensus 254 ~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~~ 292 (549)
T 3nlc_A 254 TGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549)
T ss_dssp EEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCcc
Confidence 377889999999999999999986 24566666554
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-06 Score=85.96 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .+ + ..+........+..++.++.+ +|
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~--~~--------d-----~~~~~~l~~~l~~~Gv~i~~~~~v 249 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR--KF--------D-----ECIQNTITDHYVKEGINVHKLSKI 249 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT--TS--------C-----HHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc--cc--------C-----HHHHHHHHHHHHhCCeEEEeCCEE
Confidence 47899999999999999999999999999999865221 00 0 011111122233457888776 78
Q ss_pred EeEeCCCCE--EEEEEecCC-cccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHV--VHCETVTDE-LRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~--v~~~~~~~g-~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+. +.+. ..+| . ++.+|.||+|+|.+|+.
T Consensus 250 ~~i~~~~~~~~~~v~-~~~G~~--------~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 250 VKVEKNVETDKLKIH-MNDSKS--------IDDVDELIWTIGRKSHL 287 (479)
T ss_dssp EEEEECC-CCCEEEE-ETTSCE--------EEEESEEEECSCEEECC
T ss_pred EEEEEcCCCcEEEEE-ECCCcE--------EEEcCEEEECCCCCCcc
Confidence 888754322 3332 2355 4 79999999999998876
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2e-06 Score=85.47 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHhcccC---CCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
.++++|||||+.|+.+|..|++. |.+|+||++.+.+. +. .+ ..+........+..++.++.+
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l-----~~-----~d-----~~~~~~l~~~l~~~GV~i~~~ 251 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-----RG-----FD-----SELRKQLTEQLRANGINVRTH 251 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-----TT-----SC-----HHHHHHHHHHHHHTTEEEEET
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc-----cc-----cC-----HHHHHHHHHHHHhCCCEEEeC
Confidence 46899999999999999999998 99999999987521 10 00 111122222234568888876
Q ss_pred -EeEeEeCCCC-EEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 -HCAGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 -~v~~id~~~~-~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+|..++.+.+ .+.+. ..+|+ ++.+|.||+|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~-~~~G~--------~i~~D~vv~a~G~~p~~~ 291 (490)
T 1fec_A 252 ENPAKVTKNADGTRHVV-FESGA--------EADYDVVMLAIGRVPRSQ 291 (490)
T ss_dssp CCEEEEEECTTSCEEEE-ETTSC--------EEEESEEEECSCEEESCT
T ss_pred CEEEEEEEcCCCEEEEE-ECCCc--------EEEcCEEEEccCCCcCcc
Confidence 7888876542 34333 23565 799999999999988764
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.3e-06 Score=77.03 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=71.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CC--------Cc----ccHHHHHHHHHHHHh
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL--------SS----FDDRLRHYATTQLSK 296 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~---~l--------~~----~~~~~~~~~~~~l~~ 296 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++.. .. .. ..+++.+.+.+.+++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999998765 8899997521 10 01 124677778888888
Q ss_pred cCCEEEec-ceEEEeCC-------eEEEcCCcEEecceEEEecCCCCc
Q 013810 297 SGVRLVRG-IVKDVDSQ-------KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 297 ~gV~i~~~-~v~~i~~~-------~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.|++++.+ ++..++.+ .|.+.+|+++.+|.+|+|+|..|.
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~ 116 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcC
Confidence 99999999 68888532 466778888999999999998765
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.7e-06 Score=84.11 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhh-cCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAIS-REPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 139 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. . ...+........ +..++.++.+ +
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~~-----~-----d~~~~~~l~~~l~~~~gv~i~~~~~ 238 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA-----PT-----L-----DEDVTNALVGALAKNEKMKFMTSTK 238 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-----TT-----S-----CHHHHHHHHHHHHHHTCCEEECSCE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc-----cc-----C-----CHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 4789999999999999999999999999999986521 10 0 011111122223 4568888875 8
Q ss_pred eEeEeCCCCEEEEEEe-cCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 140 CAGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 140 v~~id~~~~~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
|..++.+.+.+.+... .+|+ ..++.+|.||+|+|..|+..
T Consensus 239 v~~i~~~~~~~~v~~~~~~g~------~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 239 VVGGTNNGDSVSLEVEGKNGK------RETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp EEEEEECSSSEEEEEECC---------EEEEEESEEEECSCEEECCT
T ss_pred EEEEEEcCCeEEEEEEcCCCc------eEEEECCEEEECCCcccCCC
Confidence 8888765543433221 1331 11789999999999988764
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-06 Score=85.94 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. . ...+........+..++.++.+ +|
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l-----~~-----~-----~~~~~~~l~~~l~~~gv~i~~~~~v 241 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-----PT-----M-----DAEIRKQFQRSLEKQGMKFKLKTKV 241 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----TT-----S-----CHHHHHHHHHHHHHSSCCEECSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc-----cc-----c-----cHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 4789999999999999999999999999999986531 10 0 0111111222234467888775 88
Q ss_pred EeEeCCCCEEEEEEe--cCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~--~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+... .+|+ ..++.+|.||+|+|..|+..
T Consensus 242 ~~i~~~~~~~~v~~~~~~~g~------~~~~~~D~vv~a~G~~p~~~ 282 (470)
T 1dxl_A 242 VGVDTSGDGVKLTVEPSAGGE------QTIIEADVVLVSAGRTPFTS 282 (470)
T ss_dssp EEEECSSSSEEEEEEESSSCC------CEEEEESEEECCCCEEECCT
T ss_pred EEEEEcCCeEEEEEEecCCCc------ceEEECCEEEECCCCCcCCC
Confidence 888876543433221 1331 11789999999999988754
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=84.21 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. . . ...+.+......+..++.++.+ +|
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~-~-----d~~~~~~l~~~l~~~gV~v~~~~~v 262 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG---------G-M-----DGEVAKQLQRMLTKQGIDFKLGAKV 262 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS---------S-S-----CHHHHHHHHHHHHHTTCEEECSEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc---------c-C-----CHHHHHHHHHHHHhCCCEEEECCeE
Confidence 47899999999999999999999999999998875321 0 0 0111222222234468888775 78
Q ss_pred EeEeCCCCEEEEEEe--cCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETV--TDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~--~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+.+.+... .+|+ +.++.+|.||+|+|..|+...
T Consensus 263 ~~i~~~~~~~~v~~~~~~~g~------~~~i~~D~Vi~a~G~~p~~~~ 304 (491)
T 3urh_A 263 TGAVKSGDGAKVTFEPVKGGE------ATTLDAEVVLIATGRKPSTDG 304 (491)
T ss_dssp EEEEEETTEEEEEEEETTSCC------CEEEEESEEEECCCCEECCTT
T ss_pred EEEEEeCCEEEEEEEecCCCc------eEEEEcCEEEEeeCCccCCCc
Confidence 888765555443322 1232 127899999999999877643
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.3e-06 Score=77.45 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=69.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------------Ccc----cHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------------SSF----DDRLRHYAT 291 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----------------~~~----~~~~~~~~~ 291 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ +.+ ..++.+.+.
T Consensus 7 ~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (335)
T 2zbw_A 7 DVLIVGAGPTGLFAGFYVGMRG--------------LSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLV 72 (335)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHH
Confidence 7999999999999999998755 899999985321 111 245666777
Q ss_pred HHHHhcCCEEEec-ceEEEeCC--e--EEEcCCcEEecceEEEecCCCC
Q 013810 292 TQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 292 ~~l~~~gV~i~~~-~v~~i~~~--~--v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+++.+++++.+ +|.+++.. . |.+.+|+++.+|.||+|+|..+
T Consensus 73 ~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~ 121 (335)
T 2zbw_A 73 EQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA 121 (335)
T ss_dssp HHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred HHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence 7888889999887 48877542 2 5667788899999999999853
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.6e-07 Score=89.48 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.+.+.+.+.+.+.|++++.++ |++|+. ..+++.+|+++.+|.||+++..
T Consensus 223 ~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 223 GIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHTSCGGGEEESGGGCEEEEETTTTEEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHhcCeeeecceEEEEEEccCCEEEEcCCCEEECCEEEECCCH
Confidence 456667777888899999985 888864 5788999999999999998763
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=82.72 Aligned_cols=96 Identities=9% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..+++.|.+|+|+++.+.+. . . . .. .+........+..++.++.+ +|
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll-----~----~-~-d~----~~~~~~~~~l~~~gV~i~~~~~v 211 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKIN-----K----L-M-DA----DMNQPILDELDKREIPYRLNEEI 211 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCS-----T----T-S-CG----GGGHHHHHHHHHTTCCEEESCCE
T ss_pred CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccc-----c----c-c-cc----hhHHHHHHHhhccceEEEeccEE
Confidence 4689999999999999999999999999999886521 1 0 0 01 11122222344567888776 67
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++. ..+.+ .+++ .+++|.+++|+|..|+..
T Consensus 212 ~~~~~--~~v~~---~~g~--------~~~~D~vl~a~G~~Pn~~ 243 (437)
T 4eqs_A 212 NAING--NEITF---KSGK--------VEHYDMIIEGVGTHPNSK 243 (437)
T ss_dssp EEEET--TEEEE---TTSC--------EEECSEEEECCCEEESCG
T ss_pred EEecC--Ceeee---cCCe--------EEeeeeEEEEeceecCcH
Confidence 77764 34544 3666 899999999999887653
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=84.86 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- .. ...+........+..++.++.+ +|
T Consensus 151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~~-------------~~~~~~~l~~~l~~~GV~i~~~~~v 215 (565)
T 3ntd_A 151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT--PV-------------DREMAGFAHQAIRDQGVDLRLGTAL 215 (565)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT--TS-------------CHHHHHHHHHHHHHTTCEEEETCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch--hc-------------CHHHHHHHHHHHHHCCCEEEeCCeE
Confidence 36899999999999999999999999999998765211 00 0111111222234568888775 77
Q ss_pred EeEeC-------------------CCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDT-------------------DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~-------------------~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++. ..+.+.+.. .+|+ ++.+|.||+|+|..|+.
T Consensus 216 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~g~--------~i~~D~vi~a~G~~p~~ 269 (565)
T 3ntd_A 216 SEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL-SNGE--------LLETDLLIMAIGVRPET 269 (565)
T ss_dssp EEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE-TTSC--------EEEESEEEECSCEEECC
T ss_pred EEEeccccccccccccccccccccCCCcEEEEE-cCCC--------EEEcCEEEECcCCccch
Confidence 77765 344444432 4565 79999999999988764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=75.93 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=70.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------C--------cc----cHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--------SF----DDRLRHYAT 291 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~--------~~----~~~~~~~~~ 291 (436)
+|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+ + .+ ..++.+.+.
T Consensus 16 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (360)
T 3ab1_A 16 DLTIIGGGPTGIFAAFQCGMNN--------------ISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLW 81 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHH
Confidence 7999999999999999998755 899999985321 1 11 256667777
Q ss_pred HHHHhcCCEEEec-ceEEEeC--C---eEEEcCCcEEecceEEEecCCCC
Q 013810 292 TQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 292 ~~l~~~gV~i~~~-~v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+++.+++++.+ +|..++. + .|.+.+|+++.+|.||+|+|..+
T Consensus 82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 82 AQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA 131 (360)
T ss_dssp HHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred HHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence 8888889999887 4888763 2 46777888899999999999843
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-06 Score=84.95 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=71.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+.- . .+ ..+........+..++.++.+ +|
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~---------~-~d-----~~~~~~l~~~l~~~GV~i~~~~~V 246 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP---------Y-ED-----ADAALVLEESFAERGVRLFKNARA 246 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC---------C-SS-----HHHHHHHHHHHHHTTCEEETTCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc---------c-cC-----HHHHHHHHHHHHHCCCEEEeCCEE
Confidence 47899999999999999999999999999999865321 0 00 111122222234568888775 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
+.++.+.+.+.+. ..++. ++.+|.||+|+|..|+..
T Consensus 247 ~~i~~~~~~v~v~-~~~g~--------~i~aD~Vv~a~G~~p~~~ 282 (499)
T 1xdi_A 247 ASVTRTGAGVLVT-MTDGR--------TVEGSHALMTIGSVPNTS 282 (499)
T ss_dssp EEEEECSSSEEEE-ETTSC--------EEEESEEEECCCEEECCS
T ss_pred EEEEEeCCEEEEE-ECCCc--------EEEcCEEEECCCCCcCCC
Confidence 8887665545554 23554 799999999999988763
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-06 Score=86.75 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. + ...+........+..++.++.+ +|
T Consensus 187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--~-------------~~~~~~~l~~~l~~~GV~i~~~~~v 251 (588)
T 3ics_A 187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP--I-------------DYEMAAYVHEHMKNHDVELVFEDGV 251 (588)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT--S-------------CHHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc--C-------------CHHHHHHHHHHHHHcCCEEEECCeE
Confidence 478999999999999999999999999999987652110 0 0111112222234568888774 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+.+.+ .+|+ ++.+|.||+|+|..|+.
T Consensus 252 ~~i~~~~~~v~~---~~g~--------~i~~D~Vi~a~G~~p~~ 284 (588)
T 3ics_A 252 DALEENGAVVRL---KSGS--------VIQTDMLILAIGVQPES 284 (588)
T ss_dssp EEEEGGGTEEEE---TTSC--------EEECSEEEECSCEEECC
T ss_pred EEEecCCCEEEE---CCCC--------EEEcCEEEEccCCCCCh
Confidence 888776555554 3565 89999999999988765
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.7e-06 Score=84.11 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + .+ . .+........+..++.++.+ +|
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~------~~-~----~~~~~l~~~l~~~Gv~i~~~~~v 239 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFF-----R------ED-P----AIGEAVTAAFRAEGIEVLEHTQA 239 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-----T------SC-H----HHHHHHHHHHHHTTCEEETTCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccC-----C------CC-H----HHHHHHHHHHHhCCCEEEcCCEE
Confidence 4789999999999999999999999999999876521 1 00 0 11111122234467888765 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.++..+.+.. ++. ++.+|.||+|+|..|+..
T Consensus 240 ~~i~~~~~~~~v~~--~~~--------~i~aD~Vv~a~G~~p~~~ 274 (467)
T 1zk7_A 240 SQVAHMDGEFVLTT--THG--------ELRADKLLVATGRTPNTR 274 (467)
T ss_dssp EEEEEETTEEEEEE--TTE--------EEEESEEEECSCEEESCT
T ss_pred EEEEEeCCEEEEEE--CCc--------EEEcCEEEECCCCCcCCC
Confidence 88876555544432 333 789999999999987753
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.9e-06 Score=82.28 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=65.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. + . ...+.+......+..++.++.+ +|.
T Consensus 144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l-----~------~-----~~~~~~~l~~~l~~~gV~i~~~~~v~ 207 (367)
T 1xhc_A 144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL-----G------L-----DEELSNMIKDMLEETGVKFFLNSELL 207 (367)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT-----T------C-----CHHHHHHHHHHHHHTTEEEECSCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec-----c------C-----CHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 689999999999999999999999999999886521 1 0 0111222222234568888776 777
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.++. ..+.+ .+| ++.+|.||+|+|..|+.
T Consensus 208 ~i~~--~~v~~---~~g---------~i~~D~vi~a~G~~p~~ 236 (367)
T 1xhc_A 208 EANE--EGVLT---NSG---------FIEGKVKICAIGIVPNV 236 (367)
T ss_dssp EECS--SEEEE---TTE---------EEECSCEEEECCEEECC
T ss_pred EEEe--eEEEE---CCC---------EEEcCEEEECcCCCcCH
Confidence 7762 34544 233 48899999999988765
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.13 E-value=3.7e-06 Score=83.17 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=70.7
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
.++|+|||||+.|+.+|..|++. |.+|+++++.+.+.-. . .+ ..+........+..++.++.+ +
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~-----~----~~-----~~~~~~l~~~l~~~GV~i~~~~~ 224 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPG-----F----TS-----KSLSQMLRHDLEKNDVVVHTGEK 224 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTT-----T----SC-----HHHHHHHHHHHHHTTCEEECSCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCccccc-----c----cC-----HHHHHHHHHHHHhcCCEEEeCCE
Confidence 47899999999999999999999 9999999987652110 0 00 111222222344568888876 7
Q ss_pred eEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
|..++.+++.+.+.. .+|+ ++.+|.||+|+|..|+.
T Consensus 225 v~~i~~~~~~v~v~~-~~g~--------~i~aD~Vv~a~G~~p~~ 260 (472)
T 3iwa_A 225 VVRLEGENGKVARVI-TDKR--------TLDADLVILAAGVSPNT 260 (472)
T ss_dssp EEEEEESSSBEEEEE-ESSC--------EEECSEEEECSCEEECC
T ss_pred EEEEEccCCeEEEEE-eCCC--------EEEcCEEEECCCCCcCH
Confidence 888887555554332 3665 89999999999998764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-06 Score=90.08 Aligned_cols=35 Identities=23% Similarity=0.499 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
++||+|||||++|+++|+.|++.|. +|+|||+...
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence 4799999999999999999999998 9999998764
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=6e-06 Score=81.79 Aligned_cols=103 Identities=21% Similarity=0.294 Sum_probs=70.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . . ...+........+..++.++.+ +|
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~-----~-----~~~~~~~l~~~l~~~Gv~v~~~~~v 244 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-----A-----V-----DEQVAKEAQKILTKQGLKILLGARV 244 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----T-----S-----CHHHHHHHHHHHHHTTEEEEETCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-----c-----c-----CHHHHHHHHHHHHhCCCEEEECCEE
Confidence 47899999999999999999999999999999865311 0 0 0111222222234568888876 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+.+.+... ++.. +.++.+|.||+|+|..|+..
T Consensus 245 ~~i~~~~~~~~v~~~-~~~g-----~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 245 TGTEVKNKQVTVKFV-DAEG-----EKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp EEEEECSSCEEEEEE-SSSE-----EEEEEESEEEECSCEEECCT
T ss_pred EEEEEcCCEEEEEEE-eCCC-----cEEEECCEEEEeeCCcccCC
Confidence 888766555444322 2210 11789999999999987764
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=6.8e-06 Score=83.62 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~ 96 (436)
.+||||||||+||++||+.|++.| .+|+|||+...
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence 379999999999999999999999 99999999753
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=6.7e-06 Score=77.18 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=70.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC----C-CC------------CCcc-----cHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----N-EI------------LSSF-----DDRLRHY 289 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~----~-~~------------l~~~-----~~~~~~~ 289 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++ . .. .+.+ ..++.+.
T Consensus 10 ~vvIIG~G~aGl~~A~~l~~~g--------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (333)
T 1vdc_A 10 RLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDK 75 (333)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHH
Confidence 7999999999999999998765 88999987 2 11 1111 2466677
Q ss_pred HHHHHHhcCCEEEecceEEEeC--C--eEEEcCCcEEecceEEEecCCCCc
Q 013810 290 ATTQLSKSGVRLVRGIVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+++.|++++.+++.+++. + .|.+ +|+++.+|.||+|+|..|.
T Consensus 76 l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~ 125 (333)
T 1vdc_A 76 FRKQSERFGTTIFTETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAK 125 (333)
T ss_dssp HHHHHHHTTCEEECCCCCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEEC
T ss_pred HHHHHHHCCCEEEEeEEEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcC
Confidence 7788888999999888777764 2 3555 7788999999999998875
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=9.3e-06 Score=75.68 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+.+...+ .+.+......+..++.++.+ +|
T Consensus 145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~-----------------~~~~~l~~~l~~~gv~i~~~~~v 207 (320)
T 1trb_A 145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK-----------------ILIKRLMDKVENGNIILHTNRTL 207 (320)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCH-----------------HHHHHHHHHHHTSSEEEECSCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCH-----------------HHHHHHHHhcccCCeEEEcCcee
Confidence 4789999999999999999999999999999876532110 11111111233468888765 88
Q ss_pred EeEeCCCCE---EEEEEecC-CcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHV---VHCETVTD-ELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~---v~~~~~~~-g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++.+.+. +.+....+ |+ +.++.+|.||+|+|..|...
T Consensus 208 ~~i~~~~~~v~~v~~~~~~~~g~------~~~i~~D~vv~a~G~~p~~~ 250 (320)
T 1trb_A 208 EEVTGDQMGVTGVRLRDTQNSDN------IESLDVAGLFVAIGHSPNTA 250 (320)
T ss_dssp EEEEECSSSEEEEEEECCTTCCC------CEEEECSEEEECSCEEESCG
T ss_pred EEEEcCCCceEEEEEEeccCCCc------eEEEEcCEEEEEeCCCCChH
Confidence 888766532 44432111 32 12789999999999887653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=75.77 Aligned_cols=90 Identities=16% Similarity=0.281 Sum_probs=67.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCC--------------CCc---------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEI--------------LSS--------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~--------------l~~--------------- 281 (436)
+|+|||+|+.|+.+|..|++.+ . +|+++++.++ .+.
T Consensus 6 ~vvIIGaG~aGl~aA~~l~~~g--------------~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 71 (369)
T 3d1c_A 6 KVAIIGAGAAGIGMAITLKDFG--------------ITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAIS 71 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSS
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhcc
Confidence 7999999999999999998765 6 8999998530 000
Q ss_pred --------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc
Q 013810 282 --------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 282 --------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
....+.+.+.+.+++.|++++.++ |.+++.+ .|.+.++ ++.+|.||+|+|..+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 72 MDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp TTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc
Confidence 012345566777788899999884 8877643 3555565 5899999999998765
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-05 Score=79.10 Aligned_cols=84 Identities=10% Similarity=0.023 Sum_probs=62.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
.++|+|||||+.|+.+|..|++.+.+ |+|+++.+.+ ....++. ....|
T Consensus 212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~------------------------------l~~~~i~-~~~~v 260 (447)
T 2gv8_A 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD------------------------------IQNESLQ-QVPEI 260 (447)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS------------------------------CBCSSEE-EECCE
T ss_pred CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc------------------------------CCCCCeE-EecCe
Confidence 47899999999999999999999999 9999987653 0012333 23466
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+...+.+. +|+ ..+.+|.||+|||..|..+-
T Consensus 261 ~~~~~~~~~v~~~---dG~-------~~~~~D~vi~atG~~~~~~~ 296 (447)
T 2gv8_A 261 TKFDPTTREIYLK---GGK-------VLSNIDRVIYCTGYLYSVPF 296 (447)
T ss_dssp EEEETTTTEEEET---TTE-------EECCCSEEEECCCBCCCCCC
T ss_pred EEEecCCCEEEEC---CCC-------EeccCCEEEECCCCCcCCCC
Confidence 6776555566553 564 13789999999999987655
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-06 Score=80.54 Aligned_cols=98 Identities=14% Similarity=0.253 Sum_probs=65.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.- . ..+ ..+........+.. +.++.+ .|
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~----~~~-----~~~~~~l~~~l~~~-v~i~~~~~v 212 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR-----R----SFD-----KEVTDILEEKLKKH-VNLRLQEIT 212 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----T----TSC-----HHHHHHHHHHHTTT-SEEEESCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccch-----h----hcC-----HHHHHHHHHHHHhC-cEEEeCCeE
Confidence 36899999999999999999999999999999865211 0 000 11111112223334 777665 67
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..++.+.+...+. .++. ++.+|.||+|+|..|+.
T Consensus 213 ~~i~~~~~v~~v~--~~g~--------~i~~D~Vv~a~G~~p~~ 246 (449)
T 3kd9_A 213 MKIEGEERVEKVV--TDAG--------EYKAELVILATGIKPNI 246 (449)
T ss_dssp EEEECSSSCCEEE--ETTE--------EEECSEEEECSCEEECC
T ss_pred EEEeccCcEEEEE--eCCC--------EEECCEEEEeeCCccCH
Confidence 7777654321222 2454 89999999999988764
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.9e-06 Score=76.18 Aligned_cols=92 Identities=18% Similarity=0.226 Sum_probs=72.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCcc-----cHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQ 293 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~-----~~~~~~~~~~~ 293 (436)
.+|+|||+|+.|+.+|..|++.+ .+|+++++... .+.+ .+++.+.+.+.
T Consensus 15 ~~vvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 15 RDVIVIGSGPAGYTAALYAARAQ--------------LAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTT--------------CCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999998765 88999986321 1112 24666777778
Q ss_pred HHhcCCEEEecceEEEeC-C--eE-EEcCCcEEecceEEEecCCCCc
Q 013810 294 LSKSGVRLVRGIVKDVDS-Q--KL-ILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 294 l~~~gV~i~~~~v~~i~~-~--~v-~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.|++++.+++.+++. + .| .+.+|+++.+|.+|+|+|..|.
T Consensus 81 ~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~ 127 (335)
T 2a87_A 81 ALRFGADLRMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR 127 (335)
T ss_dssp HHHTTCEEECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HHHcCCEEEEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence 888899999988777764 2 36 6778889999999999998765
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=5.6e-06 Score=82.05 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=68.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.. ...+.+......+..++.++.+ .|
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l--~~~-------------d~~~~~~~~~~l~~~gv~i~~~~~v 251 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL--RSF-------------DSMISTNCTEELENAGVEVLKFSQV 251 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC--TTS-------------CHHHHHHHHHHHHHTTCEEETTEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc--ccc-------------CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 4789999999999999999999999999999876522 000 0111111222234467888775 77
Q ss_pred EeEeCCCCE--EEEEEecC--CcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDNHV--VHCETVTD--ELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~~~--v~~~~~~~--g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++...+. +.+...+. +.. ....+.+|.||+|+|..|+..
T Consensus 252 ~~i~~~~~~~~~~v~~~~~~~g~~----~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 252 KEVKKTLSGLEVSMVTAVPGRLPV----MTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp EEEEECSSSEEEEEEECCTTSCCE----EEEEEEESEEEECSCEEESCT
T ss_pred EEEEEcCCCcEEEEEEccCCCCcc----cceEEEcCEEEEeeccccCCC
Confidence 788754332 33332211 110 002789999999999987764
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=77.77 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=68.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC----------------------------c--
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----------------------------S-- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~----------------------------~-- 281 (436)
+|+|||||++|+.+|..|++.+ .+|+|+++.+... .
T Consensus 29 dViIIGgG~AGl~aA~~La~~G--------------~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~ 94 (417)
T 3v76_A 29 DVVIIGAGAAGMMCAIEAGKRG--------------RRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFC 94 (417)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHH
Confidence 7999999999999999999866 8899999853210 0
Q ss_pred -----------------------------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcE
Q 013810 282 -----------------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTE 321 (436)
Q Consensus 282 -----------------------------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~ 321 (436)
....+.+.+.+.+++.||+++.++ |+++. ++. |.+.+| +
T Consensus 95 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~ 173 (417)
T 3v76_A 95 KSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-T 173 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-E
T ss_pred HHHHHhcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-E
Confidence 012455667777888899999984 88774 333 555666 8
Q ss_pred EecceEEEecCCCC
Q 013810 322 VPYGLLVWSTGVGP 335 (436)
Q Consensus 322 i~~D~vi~a~G~~p 335 (436)
+.+|.||+|+|..+
T Consensus 174 i~ad~VIlAtG~~S 187 (417)
T 3v76_A 174 VDAASLVVASGGKS 187 (417)
T ss_dssp EEESEEEECCCCSS
T ss_pred EEeeEEEECCCCcc
Confidence 99999999999876
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-06 Score=83.30 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~ 99 (436)
.++||+|||||++||+||..|++.| ++|+|+|+++..+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG 44 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCC
Confidence 4579999999999999999999999 89999999887643
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-06 Score=84.08 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
..+||+|||||++||+||..|++.|++|+|+|++++.+..
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~ 49 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGE 49 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence 4589999999999999999999999999999999886554
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-06 Score=83.29 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=67.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. . ...+........+..++.++.+ +|+
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l-----~~-----~-----~~~~~~~l~~~l~~~GV~i~~~~~V~ 279 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK-----LI-----K-----DNETRAYVLDRMKEQGMEIISGSNVT 279 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT-----TC-----C-----SHHHHHHHHHHHHHTTCEEESSCEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc-----cc-----c-----cHHHHHHHHHHHHhCCcEEEECCEEE
Confidence 789999999999999999999999999999986521 10 0 0111111222234568888865 888
Q ss_pred eEeCCCCE----EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 142 GIDTDNHV----VHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 142 ~id~~~~~----v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
.++.+.+. +.+.. .+|+ .++.+|.||+|+|..|+.
T Consensus 280 ~i~~~~~~~v~~~~v~~-~~G~-------~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 280 RIEEDANGRVQAVVAMT-PNGE-------MRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp EEEECTTSBEEEEEEEE-TTEE-------EEEECSCEEECCCCEECC
T ss_pred EEEEcCCCceEEEEEEE-CCCc-------EEEEcCEEEECcCCccCC
Confidence 88763322 33332 2342 168999999999998865
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-06 Score=83.71 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4799999999999999999999999999999876
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=73.88 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=69.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------------CCcc----cHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF----DDRLRHYATTQLS 295 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------------l~~~----~~~~~~~~~~~l~ 295 (436)
+|+|||+|+.|+.+|..|++.+ .+|+++++... .+.+ ..++.+.+.+.++
T Consensus 18 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 3cty_A 18 DVVIVGAGAAGFSAAVYAARSG--------------FSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAA 83 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHH
Confidence 7999999999999999998765 89999998421 1111 2456667777888
Q ss_pred hcCCEEEecceEEEe--CC--eEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGIVKDVD--SQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.|++++.+++.+++ .+ .|.+ ++.++.+|.+|+|+|..|.
T Consensus 84 ~~~v~~~~~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~ 127 (319)
T 3cty_A 84 NYAKIREGVEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK 127 (319)
T ss_dssp TTSEEEETCCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC
T ss_pred HcCCEEEEeeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc
Confidence 889999887677775 34 3444 6678999999999998765
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-06 Score=83.64 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~ 99 (436)
++||+|||||++||+||++|++.|. +|+|+|+++..+.
T Consensus 2 ~~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG 41 (477)
T 3nks_A 2 GRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41 (477)
T ss_dssp CCEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBT
T ss_pred CceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC
Confidence 3699999999999999999999999 9999999877544
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-05 Score=72.77 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=65.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------Cc-------ccHHHHHHHHHHHHhc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-------SS-------FDDRLRHYATTQLSKS 297 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-------~~-------~~~~~~~~~~~~l~~~ 297 (436)
.|+|||+|+.|+.+|..+++.+ .+|+++++.... +. .++++.+...+.+.+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRAR--------------KQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKY 73 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999998766 899999985311 11 1245555555555554
Q ss_pred -CCEEEecceEEEeC-----CeEEEcCCcEEecceEEEecCCCCc
Q 013810 298 -GVRLVRGIVKDVDS-----QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 -gV~i~~~~v~~i~~-----~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++.++...+..+.. ..+.+.+|+++.+|.||+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~ 118 (304)
T 4fk1_A 74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE 118 (304)
T ss_dssp TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE
T ss_pred CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc
Confidence 46666665554432 2477889999999999999998875
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=9e-06 Score=80.82 Aligned_cols=100 Identities=16% Similarity=0.230 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
.++|+|||||+.|+.+|..|++ .|.+|+++++.+.... ..+ . ..+........+..++.++.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-----~~l----~-----~~~~~~~~~~l~~~GV~v~~ 245 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----KIL----P-----EYLSNWTMEKVRREGVKVMP 245 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----TTS----C-----HHHHHHHHHHHHTTTCEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-----ccC----C-----HHHHHHHHHHHHhcCCEEEe
Confidence 4789999999999999999976 5789999998754211 000 0 01111122234557888887
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+ +|+.++.+++.+.+. ..+|+ ++.+|.||+|+|..|+.
T Consensus 246 ~~~V~~i~~~~~~~~v~-l~dG~--------~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 246 NAIVQSVGVSSGKLLIK-LKDGR--------KVETDHIVAAVGLEPNV 284 (493)
T ss_dssp SCCEEEEEEETTEEEEE-ETTSC--------EEEESEEEECCCEEECC
T ss_pred CCEEEEEEecCCeEEEE-ECCCC--------EEECCEEEECCCCCccH
Confidence 6 788887555544433 34665 89999999999998765
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.9e-05 Score=74.93 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=67.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-C-----------------c------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-S-----------------S------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~-----------------~------------ 281 (436)
+|+|||+|++|+.+|..+++.+ .+|+++++.+.. . .
T Consensus 6 dViIIGgG~aGl~aA~~la~~G--------------~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~ 71 (401)
T 2gqf_A 6 ENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFV 71 (401)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTST
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHH
Confidence 7999999999999999999866 789999885321 0 0
Q ss_pred -----------------------------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEe-C-----Ce--EEEc
Q 013810 282 -----------------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVD-S-----QK--LILN 317 (436)
Q Consensus 282 -----------------------------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~-~-----~~--v~~~ 317 (436)
...++.+.+.+.+++.||+++.++ ++++. . +. |.+.
T Consensus 72 ~~~l~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~ 151 (401)
T 2gqf_A 72 KSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVN 151 (401)
T ss_dssp HHHHHHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEET
T ss_pred HHHHHhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEEC
Confidence 123344566777888899999984 87775 2 33 4445
Q ss_pred CCcEEecceEEEecCCCC
Q 013810 318 DGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p 335 (436)
+| ++.+|.||+|+|..+
T Consensus 152 ~g-~i~ad~VVlAtG~~s 168 (401)
T 2gqf_A 152 ST-QWQCKNLIVATGGLS 168 (401)
T ss_dssp TE-EEEESEEEECCCCSS
T ss_pred CC-EEECCEEEECCCCcc
Confidence 55 799999999999988
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.2e-06 Score=82.31 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
..+.+.+.+.+++.|+++++++ |++|+. ++++..+|+++.+|.||+|+|...
T Consensus 189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~vV~~~g~~~~ad~Vv~a~~~~~ 243 (421)
T 3nrn_A 189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKVYTRDNEEYSFDVAISNVGVRE 243 (421)
T ss_dssp HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEEEETTCCEEECSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEEEEeCCcEEEeCEEEECCCHHH
Confidence 5777888888999999999995 988864 455567788899999999998643
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.5e-06 Score=79.46 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=35.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC-Cccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~-~~~~~ 99 (436)
..++|+|||||+|||+||..|++.|++|+|+|++ +..+.
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGG 82 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGG 82 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBT
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCC
Confidence 4579999999999999999999999999999998 66543
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-06 Score=82.15 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
..+.+.+.+.+++.|+++++++ |++|. ++++ +..+|+++.+|.||+|+|....
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCEEEECCEEEECCCHHHH
Confidence 4677888889999999999995 88875 3433 2335788999999999986543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.00 E-value=3.1e-06 Score=84.83 Aligned_cols=39 Identities=31% Similarity=0.338 Sum_probs=35.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~ 100 (436)
++||+|||||+|||+||..|++.|++|+|+|+++..+..
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr 42 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR 42 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence 478999999999999999999999999999999876543
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=73.10 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=70.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C-------------Ccc-----cHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L-------------SSF-----DDRLRHY 289 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~----l-------------~~~-----~~~~~~~ 289 (436)
.|+|||+|+.|+.+|..+++.+ .+|+++++... + +.+ ++++.+.
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g--------------~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~ 71 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSS--------------LKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMN 71 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHH
Confidence 6999999999999999999876 88999987431 1 111 2456677
Q ss_pred HHHHHHhcCCEEEecceEEEeC----CeEEEcCCcEEecceEEEecCCCCc
Q 013810 290 ATTQLSKSGVRLVRGIVKDVDS----QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~v~~i~~----~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+++.++++....+..... ..+.+.++.++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~ 122 (314)
T 4a5l_A 72 MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAK 122 (314)
T ss_dssp HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEEC
T ss_pred HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEccccccc
Confidence 7788888999998887655543 2356678889999999999998775
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=4.2e-06 Score=79.69 Aligned_cols=35 Identities=31% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++||+|||||++|+++|+.|++.|++|+|||+..
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccC
Confidence 45899999999999999999999999999999875
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=78.13 Aligned_cols=91 Identities=23% Similarity=0.287 Sum_probs=71.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|+.|+.+|..|++.+ .+|+|++++.+...
T Consensus 28 DVvVIGgG~aGl~aA~~la~~G--------------~~V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~ 93 (484)
T 3o0h_A 28 DLFVIGSGSGGVRAARLAGALG--------------KRVAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGW 93 (484)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred CEEEECcCHHHHHHHHHHHhCc--------------CEEEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCc
Confidence 7999999999999999999876 89999998532100
Q ss_pred ------cc------------HHHHHHHHHHHHhcCCEEEecceEEEeCCeEEEc-CCcEEecceEEEecCCCCc
Q 013810 282 ------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILN-DGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 282 ------~~------------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~-~g~~i~~D~vi~a~G~~p~ 336 (436)
++ ..+...+.+.+++.+|+++.+.+..++...+.+. +++++.+|.+++|+|..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~ 167 (484)
T 3o0h_A 94 KYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIV 167 (484)
T ss_dssp CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEEC
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcc
Confidence 00 0222334556777899999998888888888887 7889999999999998765
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=78.92 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=72.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC---CCC--------C----cccHHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL--------S----SFDDRLRHYATTQLS 295 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~---~~l--------~----~~~~~~~~~~~~~l~ 295 (436)
.+|+|||||+.|+.+|..|++.+ .+|+++++. ... . ...+++.+.+.+.++
T Consensus 213 ~dVvIIGgG~AGl~aA~~la~~G--------------~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSARKG--------------IRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--------------CeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999998765 889999752 111 0 123567777888888
Q ss_pred hcCCEEEec-ceEEEeC-------CeEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRG-IVKDVDS-------QKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~-~v~~i~~-------~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.||+++.+ ++..++. ..|.+.+|+++.+|.||+|+|..|.
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~ 327 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWR 327 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 999999999 5888853 2467788889999999999998765
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-06 Score=84.95 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCC------CeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g------~~v~lie~~~~~~~ 99 (436)
++||+|||||++||+||++|++.| ++|+|+|+.+..+.
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG 48 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCT
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCc
Confidence 479999999999999999999999 99999999876543
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.5e-06 Score=85.49 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~~ 100 (436)
.+||+|||||+|||+||..|++.| ++|+|+|+++..+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr 47 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGR 47 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTT
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCc
Confidence 479999999999999999999999 999999999876543
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.1e-05 Score=79.48 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ + ..+........+..++.++.+ +|
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l--~~~--------~-----~~~~~~l~~~l~~~Gv~i~~~~~v 234 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL--SRF--------D-----QDMRRGLHAAMEEKGIRILCEDII 234 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS--TTS--------C-----HHHHHHHHHHHHHTTCEEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc--ccc--------C-----HHHHHHHHHHHHHCCCEEECCCEE
Confidence 4789999999999999999999999999999886522 000 0 111122222234568888874 78
Q ss_pred EeEeCCCCE-EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCC
Q 013810 141 AGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (436)
Q Consensus 141 ~~id~~~~~-v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~ 186 (436)
..++.+.+. +.+....+| ++.+|.||+|+|..|+...
T Consensus 235 ~~i~~~~~~~~~v~~~~~g---------~i~aD~Vv~a~G~~p~~~~ 272 (463)
T 4dna_A 235 QSVSADADGRRVATTMKHG---------EIVADQVMLALGRMPNTNG 272 (463)
T ss_dssp EEEEECTTSCEEEEESSSC---------EEEESEEEECSCEEESCTT
T ss_pred EEEEEcCCCEEEEEEcCCC---------eEEeCEEEEeeCcccCCCC
Confidence 888765332 333212234 4889999999999876653
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-06 Score=81.64 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 37999999999999999999999999999999764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=78.90 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=66.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++++|||||+.|+.+|..|++.|.+|+++++...+ ... ...+........+..++.++.+ +|
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l------~~~----------d~~~~~~l~~~l~~~Gv~i~~~~~v 250 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVL------RGF----------DQQMAELVAASMEERGIPFLRKTVP 250 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSS------TTS----------CHHHHHHHHHHHHHTTCCEEETEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC------ccc----------CHHHHHHHHHHHHhCCCEEEeCCEE
Confidence 368999999999999999999999999999874321 100 0111122222234567888775 77
Q ss_pred EeEeCCC-CE--EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDN-HV--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~-~~--v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++... +. +.+....++. +.++.+|.||+|+|..|+..
T Consensus 251 ~~i~~~~~~~~~v~~~~~~~~~------~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 251 LSVEKQDDGKLLVKYKNVETGE------ESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp EEEEECTTSCEEEEEEETTTCC------EEEEEESEEEECSCEEECCG
T ss_pred EEEEEcCCCcEEEEEecCCCCc------eeEEEcCEEEECcccccCcC
Confidence 7887533 22 3333211122 22689999999999887653
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-06 Score=81.96 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+||+|||||+|||+||..|++.|++|+|+|+.+..+.
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG 48 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG 48 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 357999999999999999999999999999999887543
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=77.98 Aligned_cols=86 Identities=10% Similarity=-0.034 Sum_probs=61.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCA 141 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (436)
.++|+|||||++|+.+|..|++.|.+|+|+++.+...... + ..++.++ ..|.
T Consensus 197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~--------------~-------------~~~V~~~-~~V~ 248 (464)
T 2xve_A 197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK--------------W-------------PENWDER-PNLV 248 (464)
T ss_dssp TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC--------------C-------------CTTEEEC-SCEE
T ss_pred CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC--------------C-------------CCceEEc-CCeE
Confidence 4789999999999999999999999999999876521000 0 0234443 4566
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~ 188 (436)
.++. +.+.+ .+|+ ++.+|.||+|||..|..+-++
T Consensus 249 ~i~~--~~V~~---~dG~--------~i~~D~Vi~atG~~p~~~~l~ 282 (464)
T 2xve_A 249 RVDT--ENAYF---ADGS--------SEKVDAIILCTGYIHHFPFLN 282 (464)
T ss_dssp EECS--SEEEE---TTSC--------EEECSEEEECCCBCCCCTTBC
T ss_pred EEeC--CEEEE---CCCC--------EEeCCEEEECCCCCCCCCCcC
Confidence 6642 34554 3676 789999999999988765443
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.92 E-value=5.4e-06 Score=80.11 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=35.3
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCcceec
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFT 100 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~~~~~ 100 (436)
++||+|||||++||+||..|++. |++|+|+|+++..+..
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~ 46 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGN 46 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGG
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCe
Confidence 58999999999999999999998 9999999999876443
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=73.76 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=67.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
+|+|||+|++|+.+|..|++.+ .+|+++++.+...
T Consensus 8 dVvIVGaG~aGl~~A~~L~~~G--------------~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~ 73 (399)
T 2x3n_A 8 DVLINGCGIGGAMLAYLLGRQG--------------HRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGR 73 (399)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCE
T ss_pred CEEEECcCHHHHHHHHHHHhCC--------------CcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCC
Confidence 7999999999999999999865 6677776632110
Q ss_pred ------------------------------cccHHHHHHHHHHHHhc-CCEEEecc-eEEEeC--C----eEEEcCCcEE
Q 013810 281 ------------------------------SFDDRLRHYATTQLSKS-GVRLVRGI-VKDVDS--Q----KLILNDGTEV 322 (436)
Q Consensus 281 ------------------------------~~~~~~~~~~~~~l~~~-gV~i~~~~-v~~i~~--~----~v~~~~g~~i 322 (436)
.....+.+.+.+.+++. |++++.++ |++++. + .|++.+|+++
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~ 153 (399)
T 2x3n_A 74 VRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVL 153 (399)
T ss_dssp EECEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cceeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEE
Confidence 00124455666777777 89999884 888753 2 5677888899
Q ss_pred ecceEEEecCCCCc
Q 013810 323 PYGLLVWSTGVGPS 336 (436)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (436)
.+|.||.|.|....
T Consensus 154 ~ad~vV~AdG~~s~ 167 (399)
T 2x3n_A 154 RPRVVVGADGIASY 167 (399)
T ss_dssp EEEEEEECCCTTCH
T ss_pred ECCEEEECCCCChH
Confidence 99999999998764
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.6e-05 Score=70.78 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=68.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC----C--------Ccc----cHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI----L--------SSF----DDRLRHYATTQLS 295 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~----l--------~~~----~~~~~~~~~~~l~ 295 (436)
.|+|||+|+.|+.+|..+++.+ .+|+|++++.+ + +.+ .+++.....+...
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g--------------~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~ 73 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRAN--------------LKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAK 73 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHh
Confidence 6999999999999999999876 89999998532 1 111 2456666667777
Q ss_pred hcCCEEEecc-eEEE--eCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGI-VKDV--DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i--~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.++.+..+. +... ....+...+++++.+|.+|+|||.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~ 117 (312)
T 4gcm_A 74 KFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYK 117 (312)
T ss_dssp HTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEEC
T ss_pred hccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccC
Confidence 7788887774 3222 234566678889999999999998876
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5.7e-06 Score=81.91 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=34.5
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
...+||+|||||++||+||..|++.|++|+|+|+++..+.
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GG 53 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG 53 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCc
Confidence 3458999999999999999999999999999999987643
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.9e-05 Score=78.33 Aligned_cols=102 Identities=12% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+++++...+ ... ...+.+......+..++.++.+ .+
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l------~~~----------d~~~~~~l~~~l~~~gv~~~~~~~v 248 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPL------RGF----------DQQMSSLVTEHMESHGTQFLKGCVP 248 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSS------TTS----------CHHHHHHHHHHHHHTTCEEEETEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCccc------ccC----------CHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 367999999999999999999999999999985321 100 0111222222334568888776 67
Q ss_pred EeEeC-CCCE--EEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDT-DNHV--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~-~~~~--v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..+.. +.+. +.+....+|+ +.++.+|.||+|+|..|+..
T Consensus 249 ~~i~~~~~~~~~v~~~~~~~g~------~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 249 SHIKKLPTNQLQVTWEDHASGK------EDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp EEEEECTTSCEEEEEEETTTTE------EEEEEESEEEECSCEEESCG
T ss_pred EEEEEcCCCcEEEEEEeCCCCe------eEEEECCEEEEcccCCcccC
Confidence 77764 2333 3333211232 12578999999999887654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.4e-06 Score=79.59 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=51.1
Q ss_pred cEEEEEeCCC-CCCcccHHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce--EEEcCCcEEecceEEEecCCCCchhccc
Q 013810 268 IHVTLIEANE-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVKS 341 (436)
Q Consensus 268 ~~V~lv~~~~-~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~ 341 (436)
....++.+.. .+. +..+.+.+.+.+++.|++++.+ +|++++. ++ |.+.+| ++.+|.||+|+|.....++..
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~ 211 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSK 211 (389)
T ss_dssp TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGG
T ss_pred CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhh
Confidence 5566666532 221 3567778888889999999998 4888753 33 444444 799999999999876656555
Q ss_pred CC
Q 013810 342 LD 343 (436)
Q Consensus 342 ~~ 343 (436)
++
T Consensus 212 ~g 213 (389)
T 2gf3_A 212 LN 213 (389)
T ss_dssp GT
T ss_pred hc
Confidence 44
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.5e-06 Score=82.83 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=34.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
++||+|||||++||+||..|++.|++|+|+|+++..+.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG 42 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGG 42 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 47999999999999999999999999999999877543
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=78.55 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=64.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. ..+ ..+...+.+ .. .+.++.+ +|
T Consensus 172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~---------~~d-~~~~~~l~~----~l---~v~i~~~~~v 234 (466)
T 3l8k_A 172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT---------LED-QDIVNTLLS----IL---KLNIKFNSPV 234 (466)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT---------SCC-HHHHHHHHH----HH---CCCEECSCCE
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC---------CCC-HHHHHHHHh----cC---EEEEEECCEE
Confidence 478999999999999999999999999999987653110 000 011111111 11 1555554 66
Q ss_pred EeEeCCC-CEEEEEEec-CCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTDN-HVVHCETVT-DELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~~-~~v~~~~~~-~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..++... +.+.+.... +|+ +.++.+|.||+|+|.+|+..
T Consensus 235 ~~i~~~~~~~v~v~~~~~~G~------~~~i~~D~vi~a~G~~p~~~ 275 (466)
T 3l8k_A 235 TEVKKIKDDEYEVIYSTKDGS------KKSIFTNSVVLAAGRRPVIP 275 (466)
T ss_dssp EEEEEEETTEEEEEECCTTSC------CEEEEESCEEECCCEEECCC
T ss_pred EEEEEcCCCcEEEEEEecCCc------eEEEEcCEEEECcCCCcccc
Confidence 7776544 445443321 332 12689999999999988765
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=7.4e-06 Score=78.61 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+||+|||||++|++||..|++.|.+|+|+|+.+..+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 66 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence 458999999999999999999999999999999877543
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.5e-05 Score=76.68 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=70.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------C-------------c--------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S-------------S-------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~-------------~-------- 281 (436)
+|+|||+|.+|+.+|..|.+.+ .+|+++++.+.+ + .
T Consensus 23 dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~ 88 (549)
T 4ap3_A 23 DVVVVGAGIAGLYAIHRFRSQG--------------LTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQE 88 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred CEEEECchHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccC
Confidence 7999999999999999998765 799999984211 0 0
Q ss_pred --------ccHHHHHHHHHHHHhcCC--EEEec-ceEEEe--CC----eEEEcCCcEEecceEEEecC--CCCc
Q 013810 282 --------FDDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTG--VGPS 336 (436)
Q Consensus 282 --------~~~~~~~~~~~~l~~~gV--~i~~~-~v~~i~--~~----~v~~~~g~~i~~D~vi~a~G--~~p~ 336 (436)
..+++.+++.+.+++.++ +++.+ +|++++ ++ .|.+.+|+++.+|.||+|+| ..|.
T Consensus 89 ~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~ 162 (549)
T 4ap3_A 89 WNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN 162 (549)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC
T ss_pred CCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC
Confidence 124666777788888888 77777 477774 33 67888999999999999999 4444
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.7e-05 Score=77.95 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=63.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+|+++... +... + ..+........+..++.++.+ .+
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~------l~~~-----d-----~~~~~~~~~~l~~~GV~v~~~~~v 273 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL------LRGF-----D-----QDMANKIGEHMEEHGIKFIRQFVP 273 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS------STTS-----C-----HHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccc------cccC-----C-----HHHHHHHHHHHHHCCCEEEeCCeE
Confidence 35799999999999999999999999999997421 1100 0 111222222234568888765 44
Q ss_pred EeEeCC----CCEEEEEE-ecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 141 AGIDTD----NHVVHCET-VTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 141 ~~id~~----~~~v~~~~-~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
..+... ...+.+.. ..++.. +.++.+|.||+|+|..|+..
T Consensus 274 ~~v~~~~~~~~~~~~v~~~~~~g~~-----~~~~~~D~vi~a~G~~p~~~ 318 (519)
T 3qfa_A 274 IKVEQIEAGTPGRLRVVAQSTNSEE-----IIEGEYNTVMLAIGRDACTR 318 (519)
T ss_dssp EEEEEEECCTTCEEEEEEEESSSSC-----EEEEEESEEEECSCEEESCS
T ss_pred EEEEEccCCCCceEEEEEEECCCcE-----EEEEECCEEEEecCCcccCC
Confidence 444321 13333321 123321 12578999999999988664
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-06 Score=82.08 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..+||||||||+|||+||+.|++.|.+|+||||.+..
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3479999999999999999999999999999998765
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-06 Score=78.64 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~ 97 (436)
+||+|||||+||+++|..|++. |++|+|||+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 4799999999999999999998 9999999998654
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5e-05 Score=76.21 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=68.3
Q ss_pred cEEEECCChHHHHHHHHHH-HHHHHHHHhhhcCCCCccEEEEEeCCC-CC--------Cc-------------c------
Q 013810 232 HCVVVGGGPTGVEFSGELS-DFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SS-------------F------ 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~-~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l--------~~-------------~------ 282 (436)
+|+|||+|++|+.+|..|+ +.+ .+|+++++.+ +. +. +
T Consensus 10 dVvIIGaG~aGl~aA~~L~~~~G--------------~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~ 75 (540)
T 3gwf_A 10 DAVVIGAGFGGIYAVHKLHHELG--------------LTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQ 75 (540)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC--------------CCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCC--------------CCEEEEECCCCCCCcccccCCCCceecCCcceeeecccccccc
Confidence 7999999999999999998 654 7999999843 11 10 0
Q ss_pred ----------cHHHHHHHHHHHHhcCC--EEEecc-eEEEe--CC----eEEEcCCcEEecceEEEecCC
Q 013810 283 ----------DDRLRHYATTQLSKSGV--RLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 283 ----------~~~~~~~~~~~l~~~gV--~i~~~~-v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.+++.+.+.+.+++.|+ +++.++ |.+++ ++ .|.+.+|+++.+|.||+|+|.
T Consensus 76 ~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~ 145 (540)
T 3gwf_A 76 ESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGL 145 (540)
T ss_dssp HCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCS
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcc
Confidence 23566777788888888 788774 77764 33 577889999999999999995
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=8.9e-05 Score=72.67 Aligned_cols=90 Identities=22% Similarity=0.375 Sum_probs=67.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------------------c----------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------------------S---------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~--------------------~---------- 281 (436)
.|+|||+|.+|+-+|..|++.+ .+|+|+++.+... .
T Consensus 28 dVvIIGgG~aGl~aA~~la~~G--------------~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~ 93 (447)
T 2i0z_A 28 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR 93 (447)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred CEEEECCcHHHHHHHHHHHHCC--------------CCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChH
Confidence 7999999999999999999765 7899998743110 0
Q ss_pred --------c------------------------------cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEc
Q 013810 282 --------F------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILN 317 (436)
Q Consensus 282 --------~------------------------------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~ 317 (436)
+ ...+.+.+.+.+++.||+++.++ |+++. ++ .|.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~ 173 (447)
T 2i0z_A 94 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ 173 (447)
T ss_dssp GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred HHHHHHHhcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC
Confidence 0 02333455666778899999884 77774 33 36777
Q ss_pred CCcEEecceEEEecCCCC
Q 013810 318 DGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p 335 (436)
+|+++.+|.||+|+|..+
T Consensus 174 ~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 174 TGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp TCCEEECSCEEECCCCSS
T ss_pred CCCEEECCEEEECCCCCc
Confidence 887899999999999877
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=75.00 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=66.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC--------c----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------S---------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~--------~---------------------- 281 (436)
+|+|||+|+.|+.+|..|++.+... .+ .+|+++++.+.+. .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~--------~~-~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~ 102 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQ--------GA-LEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYS 102 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHH--------CC-CCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTS
T ss_pred CEEEECCCHHHHHHHHHHHhccccc--------Cc-ccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCC
Confidence 7999999999999999999865100 00 5899998854110 0
Q ss_pred ----------------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---------eEEEcCCc----EEecc
Q 013810 282 ----------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---------KLILNDGT----EVPYG 325 (436)
Q Consensus 282 ----------------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---------~v~~~~g~----~i~~D 325 (436)
...++.+++....++.+++++.++ |.+++.. .|.+.+|+ ++.+|
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d 182 (463)
T 3s5w_A 103 FVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR 182 (463)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEES
T ss_pred hhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeC
Confidence 012344455555666788998885 7777532 45556665 89999
Q ss_pred eEEEecCCCCc
Q 013810 326 LLVWSTGVGPS 336 (436)
Q Consensus 326 ~vi~a~G~~p~ 336 (436)
.||+|+|..|.
T Consensus 183 ~lVlAtG~~p~ 193 (463)
T 3s5w_A 183 ALVVSPGGTPR 193 (463)
T ss_dssp EEEECCCCEEC
T ss_pred EEEECCCCCCC
Confidence 99999998775
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.4e-06 Score=80.28 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~ 99 (436)
++||+|||||++||+||.+|++.| ++|+|+|+++..+.
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG 43 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBT
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCc
Confidence 579999999999999999999999 99999999876543
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.1e-05 Score=80.33 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=34.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
.+||+|||||+|||+||..|++.|++|+|+|+++..+.
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 76 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG 76 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBT
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 37999999999999999999999999999999987654
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=78.32 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=66.5
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC--------Cc--ccHHHHHHHHHHHHhcC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKSG 298 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l--------~~--~~~~~~~~~~~~l~~~g 298 (436)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+ +. ++.++.+...+.+++.|
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 186 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKG--------------YEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAG 186 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCC
Confidence 3458999999999999999999876 899999986422 22 35566677778889999
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
|+++.++... ..+.++++ .+.+|.||+|+|..+
T Consensus 187 v~~~~~~~v~---~~v~~~~~-~~~~d~vvlAtG~~~ 219 (456)
T 2vdc_G 187 VIYHPNFEVG---RDASLPEL-RRKHVAVLVATGVYK 219 (456)
T ss_dssp CEEETTCCBT---TTBCHHHH-HSSCSEEEECCCCCE
T ss_pred cEEEeCCEec---cEEEhhHh-HhhCCEEEEecCCCC
Confidence 9999885221 22333333 367999999999864
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.5e-05 Score=75.99 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=68.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------C----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S---------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~---------------------- 280 (436)
+|+|||+|++|+.+|..|.+.+ .+|+++++.+.+ +
T Consensus 11 dVvIIGaG~aGl~aA~~L~~~g--------------~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~ 76 (545)
T 3uox_A 11 DAVVIGAGVTGIYQAFLINQAG--------------MKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPE 76 (545)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTT
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccC
Confidence 7999999999999999998755 789999985311 0
Q ss_pred -------cccHHHHHHHHHHHHhcCC--EEEec-ceEEEe--CC----eEEEcCCcEEecceEEEecC--CCCc
Q 013810 281 -------SFDDRLRHYATTQLSKSGV--RLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTG--VGPS 336 (436)
Q Consensus 281 -------~~~~~~~~~~~~~l~~~gV--~i~~~-~v~~i~--~~----~v~~~~g~~i~~D~vi~a~G--~~p~ 336 (436)
...+++.+.+.+..++.++ .++.+ +|.+++ ++ .|.+.+|+++.+|.||+|+| ..|.
T Consensus 77 ~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~ 150 (545)
T 3uox_A 77 WEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150 (545)
T ss_dssp CCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred CCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence 0125667777777788787 67776 477764 23 67888999999999999999 4554
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.83 E-value=8e-06 Score=81.92 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhccc------------CCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT------------SLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~------------~g~~v~lie~~~ 95 (436)
..++|||||||+||+++|..|++ .|++|+|||+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 35799999999999999999999 899999999865
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=80.23 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=34.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
++||+|||||++||+||..|++.|++|+|+|+++..+.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG 50 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 57999999999999999999999999999999987643
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.3e-05 Score=77.03 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+++|+|||||++|+++|..|++.|++|+|+|+++..+.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG 40 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCC
Confidence 37999999999999999999999999999999877543
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-05 Score=78.26 Aligned_cols=91 Identities=15% Similarity=0.348 Sum_probs=62.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------CC-----cccH-HHHHHHHHHH--Hhc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LS-----SFDD-RLRHYATTQL--SKS 297 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------l~-----~~~~-~~~~~~~~~l--~~~ 297 (436)
+|||||+|+.|+.+|..|.. .+.+|+||++.+. ++ .+++ ++...+.+.+ ++.
T Consensus 44 rVVIIGgG~AGl~~A~~L~~--------------~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~ 109 (502)
T 4g6h_A 44 NVLILGSGWGAISFLKHIDT--------------KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKG 109 (502)
T ss_dssp EEEEECSSHHHHHHHHHSCT--------------TTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSS
T ss_pred CEEEECCcHHHHHHHHHhhh--------------CCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcC
Confidence 89999999999999988754 3489999998642 11 1111 1111122222 245
Q ss_pred CCEEEecceEEEeC--CeEEE--------------------cCCcEEecceEEEecCCCCc
Q 013810 298 GVRLVRGIVKDVDS--QKLIL--------------------NDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~v~~i~~--~~v~~--------------------~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++++.+++++|+. ..|.+ .++.++++|.+|+|+|..|+
T Consensus 110 ~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~ 170 (502)
T 4g6h_A 110 NVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPN 170 (502)
T ss_dssp CEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEEC
T ss_pred CeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccc
Confidence 79999888888864 34543 24668999999999999887
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.4e-05 Score=80.67 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~~ 96 (436)
..++|||||||+||+++|..|++ .|++|+|||+.+.
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~ 62 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI 62 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence 35799999999999999999999 9999999998754
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.2e-05 Score=76.73 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+||+|||||++|++||..|++.|++|+|+|+++..+.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG 38 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 6899999999999999999999999999999876543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.4e-05 Score=75.41 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||+|||||+||+.||+.|++.|++|+|||+.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 689999999999999999999999999999876
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.4e-05 Score=79.29 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~~~~ 99 (436)
.+++|+|||||++||+||..|++.| .+|+|+|+++..+.
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG 47 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSG
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Confidence 4589999999999999999999998 79999999887543
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.8e-05 Score=78.83 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=35.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..++|+|||||++||+||..|++.|++|+|+|+.+..+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 357999999999999999999999999999999877544
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.8e-05 Score=80.58 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCcEEEEC--CchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 62 ~~~VvIIG--gG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
.++|+||| ||+.|+.+|..|++.|.+|+++++.+.+.-. . ........+ ....+..++.++.+
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~-----~-----~~~~~~~~l----~~~l~~~GV~i~~~~ 588 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSW-----T-----NNTFEVNRI----QRRLIENGVARVTDH 588 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGG-----G-----GGGTCHHHH----HHHHHHTTCEEEESE
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccc-----c-----ccchhHHHH----HHHHHHCCCEEEcCc
Confidence 46799999 9999999999999999999999987652110 0 000001111 11233468888876
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+|+.++.+. +.+.....+. ..++.+|.||+|+|..|+.
T Consensus 589 ~V~~i~~~~--~~v~~~~~~~------~~~i~aD~VV~A~G~~p~~ 626 (690)
T 3k30_A 589 AVVAVGAGG--VTVRDTYASI------ERELECDAVVMVTARLPRE 626 (690)
T ss_dssp EEEEEETTE--EEEEETTTCC------EEEEECSEEEEESCEEECC
T ss_pred EEEEEECCe--EEEEEccCCe------EEEEECCEEEECCCCCCCh
Confidence 888887654 3333222221 1278999999999988753
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0001 Score=70.47 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcccCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
.+.+.+.+.+++.|++++.++ |.+++. + .|.+.+| ++.+|.||+|+|.....+...+++
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~ 228 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGL 228 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCC
Confidence 345566777778899999884 888753 2 2555566 799999999999876655555443
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=1.3e-05 Score=80.03 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccc---CCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~---~g~~v~lie~~~ 95 (436)
.++|||||||+||+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 3799999999999999999999 999999999865
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=73.13 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=68.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC------------------------c-----
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------S----- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~------------------------~----- 281 (436)
.|+|||||..|+++|..+++.| .+|.|+++.. .+. .
T Consensus 30 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~ 95 (651)
T 3ces_A 30 DVIIIGGGHAGTEAAMAAARMG--------------QQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKA 95 (651)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred CEEEECChHHHHHHHHHHHhCC--------------CCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHH
Confidence 7999999999999999999876 8899998752 110 0
Q ss_pred -------------------------cc-HHHHHHHHHHHHh-cCCEEEecceEEEe--CC---eEEEcCCcEEecceEEE
Q 013810 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (436)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~ 329 (436)
.+ ..+.+.+.+.+++ .||+++...|.++. ++ +|.+.+|.++.+|.||+
T Consensus 96 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVL 175 (651)
T 3ces_A 96 IDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVL 175 (651)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEE
T ss_pred hhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 1244556667777 69999766788874 33 46778888899999999
Q ss_pred ecCCCCc
Q 013810 330 STGVGPS 336 (436)
Q Consensus 330 a~G~~p~ 336 (436)
|+|..+.
T Consensus 176 ATGt~s~ 182 (651)
T 3ces_A 176 TVGTFLD 182 (651)
T ss_dssp CCSTTTC
T ss_pred cCCCCcc
Confidence 9998653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.6e-05 Score=79.30 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~ 36 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD 36 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4799999999999999999999999999999975
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=76.09 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC------CeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g------~~v~lie~~~~ 96 (436)
+||+|||||++|+++|+.|++.| .+|+|||+...
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 48999999999999999999987 89999999753
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=71.31 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=65.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------c---------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------S--------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~---------~--------------------- 281 (436)
+|+|||||++|+-+|..|++.+ .+|+|+++.+... .
T Consensus 7 dVvIIGgG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~ 72 (421)
T 3nix_A 7 DVLVIGAGPAGTVAASLVNKSG--------------FKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQ 72 (421)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEE
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcc
Confidence 7999999999999999998765 7888888743100 0
Q ss_pred ------------------------------c-cHHHHHHHHHHHHhcCCEEEec-ceEEEeC--Ce----EEEcCCc--E
Q 013810 282 ------------------------------F-DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGT--E 321 (436)
Q Consensus 282 ------------------------------~-~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~--~~----v~~~~g~--~ 321 (436)
+ ...+.+.+.+.+++.|++++.+ +|++++. ++ +.+.+|+ +
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~ 152 (421)
T 3nix_A 73 KFGAKFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKRE 152 (421)
T ss_dssp ECEEEEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred cCCcEEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEE
Confidence 0 1234455666777789999998 4877753 32 3446787 6
Q ss_pred EecceEEEecCCCC
Q 013810 322 VPYGLLVWSTGVGP 335 (436)
Q Consensus 322 i~~D~vi~a~G~~p 335 (436)
+.+|.||.|+|...
T Consensus 153 ~~a~~vV~A~G~~s 166 (421)
T 3nix_A 153 IEARFIIDASGYGR 166 (421)
T ss_dssp EEEEEEEECCGGGC
T ss_pred EEcCEEEECCCCch
Confidence 99999999999764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.4e-05 Score=84.56 Aligned_cols=91 Identities=18% Similarity=0.330 Sum_probs=68.5
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCC--------C--cccHHHHHHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (436)
.++|+|||+|+.|+.+|..|++.+ . +|+|+++.+.+ + .++.+..++..+.+++.|
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G--------------~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~g 252 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 252 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTT
T ss_pred CCEEEEECccHHHHHHHHHHHhcC--------------CCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCC
Confidence 468999999999999999999866 6 79999986422 1 234455566667888999
Q ss_pred CEEEecceEEEeCCeEEEcCCcEEecceEEEecCC-CCc
Q 013810 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (436)
Q Consensus 299 V~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (436)
|+++.++... ...+.+++++++.+|.||+|+|. +|.
T Consensus 253 v~~~~~~~v~--~~~v~~~~~~~~~~d~vvlAtGa~~p~ 289 (1025)
T 1gte_A 253 VKIICGKSLS--ENEITLNTLKEEGYKAAFIGIGLPEPK 289 (1025)
T ss_dssp CEEEESCCBS--TTSBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred cEEEcccEec--cceEEhhhcCccCCCEEEEecCCCCCC
Confidence 9999986321 13455556666889999999998 465
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=1.2e-05 Score=78.92 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCEEEec-ceEEEeC-----------------C---eEEEcCCcEE--ecceEEEecCCCCchhcc
Q 013810 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS-----------------Q---KLILNDGTEV--PYGLLVWSTGVGPSTLVK 340 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~-~v~~i~~-----------------~---~v~~~~g~~i--~~D~vi~a~G~~p~~~~~ 340 (436)
..+.+.+.+.+++.|++++.+ +|+++.. + .|.+.+| ++ .+|.||+|+|.....++.
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~~l~~ 259 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSNRLLN 259 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHHHHHG
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHHHHHH
Confidence 477778888889999999998 4887753 2 3556677 68 999999999987655555
Q ss_pred cCCC
Q 013810 341 SLDL 344 (436)
Q Consensus 341 ~~~l 344 (436)
.+++
T Consensus 260 ~~g~ 263 (448)
T 3axb_A 260 PLGI 263 (448)
T ss_dssp GGTC
T ss_pred HcCC
Confidence 5443
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.3e-05 Score=76.16 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=61.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
..+|+|||||+.|+.+|..|++.|.+|+|+++... +... + . .+........+..++.++.+ .+
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~------l~~~-----d-~----~~~~~~~~~l~~~gv~i~~~~~v 349 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRSIL------LRGF-----D-Q----QMAEKVGDYMENHGVKFAKLCVP 349 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCS------STTS-----C-H----HHHHHHHHHHHHTTCEEEETEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcC------cCcC-----C-H----HHHHHHHHHHHhCCCEEEECCeE
Confidence 35899999999999999999999999999998621 1100 0 0 11111111233457888765 44
Q ss_pred EeEeC------C---CCEEEEEE-ecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDT------D---NHVVHCET-VTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~------~---~~~v~~~~-~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+.. . .+.+.+.. ..+|+ +..+.+|.||+|+|.+|+.
T Consensus 350 ~~v~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~~~D~vi~a~G~~p~~ 397 (598)
T 2x8g_A 350 DEIKQLKVVDTENNKPGLLLVKGHYTDGK------KFEEEFETVIFAVGREPQL 397 (598)
T ss_dssp EEEEEEECCBTTTTBCCEEEEEEEETTSC------EEEEEESEEEECSCEEECG
T ss_pred EEEEeccccccccCCCceEEEEEEeCCCc------EEeccCCEEEEEeCCcccc
Confidence 44421 1 13343321 23454 1134599999999998765
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00027 Score=67.78 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC------CC--c----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------LS--S---------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~------l~--~---------------------- 281 (436)
+|+|||+|++|+.+|..|++.+ .+|+++++.+. .. .
T Consensus 4 dV~IvGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~ 69 (394)
T 1k0i_A 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDG 69 (394)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHC
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcC
Confidence 7999999999999999999876 77888876431 00 0
Q ss_pred -------------------------------ccHHHHHHHHHHHHhcCCEEEecc-eEEEeC-----CeEEE-cCCc--E
Q 013810 282 -------------------------------FDDRLRHYATTQLSKSGVRLVRGI-VKDVDS-----QKLIL-NDGT--E 321 (436)
Q Consensus 282 -------------------------------~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~-----~~v~~-~~g~--~ 321 (436)
....+.+.+.+.+.+.|++++.+. |++++. -.|++ .+|+ +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~ 149 (394)
T 1k0i_A 70 LVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLR 149 (394)
T ss_dssp EEESCEEEEETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEE
T ss_pred CccceEEEEECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEE
Confidence 012344456666677799999984 888753 14666 6887 7
Q ss_pred EecceEEEecCCCCc
Q 013810 322 VPYGLLVWSTGVGPS 336 (436)
Q Consensus 322 i~~D~vi~a~G~~p~ 336 (436)
+.+|+||.|.|....
T Consensus 150 ~~a~~vV~AdG~~S~ 164 (394)
T 1k0i_A 150 LDCDYIAGCDGFHGI 164 (394)
T ss_dssp EECSEEEECCCTTCS
T ss_pred EEeCEEEECCCCCcH
Confidence 999999999997654
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.5e-05 Score=78.81 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~ 52 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDF 52 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSST
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 358999999999999999999999999999999853
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00072 Score=63.09 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=96.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.|+|||+|+.|+.+|..|++.. ++.+|+|+++.....
T Consensus 81 DVvIVGgG~AGL~aA~~La~~~------------~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~ 148 (344)
T 3jsk_A 81 DIVIVGAGSCGLSAAYVLSTLR------------PDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYE 148 (344)
T ss_dssp SEEEECCSHHHHHHHHHHHHHC------------TTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCE
T ss_pred CEEEECccHHHHHHHHHHHhcC------------CCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCccc
Confidence 7999999999999999998750 128899999853211
Q ss_pred ---c-----ccHHHHHHHHHHHHh-cCCEEEecc-eEEEe--C-----------------C-----eEEEc---------
Q 013810 281 ---S-----FDDRLRHYATTQLSK-SGVRLVRGI-VKDVD--S-----------------Q-----KLILN--------- 317 (436)
Q Consensus 281 ---~-----~~~~~~~~~~~~l~~-~gV~i~~~~-v~~i~--~-----------------~-----~v~~~--------- 317 (436)
. ...++.+.+.+.+.+ .||+++.+. +.++. + + +|++.
T Consensus 149 ~~G~~~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~ 228 (344)
T 3jsk_A 149 DEGDYVVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHD 228 (344)
T ss_dssp ECSSEEEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSS
T ss_pred ccCCeEEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCC
Confidence 0 012333455556666 599999884 55552 1 1 23321
Q ss_pred -----CCcEEecceEEEecCCCCc--h-h---cccCCCCCCCCCcEEeC---------CCCCCCCCCCEEEecccccccc
Q 013810 318 -----DGTEVPYGLLVWSTGVGPS--T-L---VKSLDLPKSPGGRIGID---------EWLRVPSVQDVFAVGDCSGYLE 377 (436)
Q Consensus 318 -----~g~~i~~D~vi~a~G~~p~--~-~---~~~~~l~~~~~G~i~vd---------~~~~~t~~~~Vya~GD~~~~~~ 377 (436)
+..++.++.||.|+|.... . + +..+++...-.|.-..+ ++.+ .-+|++|++|-.+...
T Consensus 229 ~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~-~v~~gl~~~gm~~~~~- 306 (344)
T 3jsk_A 229 DQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTR-EIVPGLIVGGMELSEI- 306 (344)
T ss_dssp SSSCCBCEEEECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCE-EEETTEEECGGGHHHH-
T ss_pred cccccCceEEEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCc-eEcCCEEEechhhHhh-
Confidence 2247999999999998764 1 2 33344431112211111 1112 2379999999887632
Q ss_pred CCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 378 STGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 378 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.|.+.+-+....=+..|+.||+-|+..
T Consensus 307 -~g~~rmgp~fg~m~~sg~~~a~~~~~~ 333 (344)
T 3jsk_A 307 -DGANRMGPTFGAMALSGVKAAHEAIRV 333 (344)
T ss_dssp -HTCEECCSCCHHHHHHHHHHHHHHHHH
T ss_pred -cCCCCCCcccceeeecCHHHHHHHHHH
Confidence 233333445555667899999888754
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00034 Score=70.68 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCEEEecc-eEEEe--C-C---eEEEc--CCc--EEecceEEEecCCCCc
Q 013810 287 RHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 287 ~~~~~~~l~~~gV~i~~~~-v~~i~--~-~---~v~~~--~g~--~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+++.||+++.++ ++++. + + +|++. +|+ ++.+|.||+|+|-...
T Consensus 253 ~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 253 IDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp HHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 3455566777899999984 77774 2 3 25554 675 6899999999997553
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.8e-05 Score=78.05 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||||||||+|||+||+.|++ |.+|+|||+.+..
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~ 42 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVT 42 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTT
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCC
Confidence 4799999999999999999999 9999999998643
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=68.91 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCEEEecc-eEEEeC--Ce---EEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 287 RHYATTQLSKSGVRLVRGI-VKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 287 ~~~~~~~l~~~gV~i~~~~-v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
.+.+.+.+++.|++++.++ |++++. +. |.+.+| ++.+|.||+|+|.....+...++
T Consensus 152 ~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g 213 (382)
T 1y56_B 152 TTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAG 213 (382)
T ss_dssp HHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcC
Confidence 3445566677899999984 888753 33 556666 79999999999987654444333
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0004 Score=70.03 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=66.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC------c---------------c-------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------S---------------F------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~------~---------------~------- 282 (436)
.|+|||||..|+++|..+++.| .+|.|+++.. .+. . +
T Consensus 29 DVIVIGgG~AGl~AAlalAr~G--------------~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~ 94 (637)
T 2zxi_A 29 DVVVIGGGHAGIEAALAAARMG--------------AKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKA 94 (637)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHH
Confidence 7999999999999999999876 8899998752 100 0 0
Q ss_pred --------------------------c-HHHHHHHHHHHHh-cCCEEEecceEEEe--CC---eEEEcCCcEEecceEEE
Q 013810 283 --------------------------D-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (436)
Q Consensus 283 --------------------------~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~ 329 (436)
+ ..+.+.+.+.+++ .||+++...|+++. ++ +|.+.+|.++.+|.||+
T Consensus 95 ~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVL 174 (637)
T 2zxi_A 95 IDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVV 174 (637)
T ss_dssp HHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEE
T ss_pred hhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 0 1234455666776 59999766788764 33 47788898999999999
Q ss_pred ecCCCC
Q 013810 330 STGVGP 335 (436)
Q Consensus 330 a~G~~p 335 (436)
|+|..+
T Consensus 175 ATG~~s 180 (637)
T 2zxi_A 175 TTGTFL 180 (637)
T ss_dssp CCTTCB
T ss_pred ccCCCc
Confidence 999764
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00026 Score=65.68 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=93.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-c-----------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-S----------------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-~----------------------------- 281 (436)
+|+|||+|+.|+.+|..|++.+ ++.+|+++++..... .
T Consensus 67 dv~IiG~G~aGl~aA~~la~~~------------~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~ 134 (326)
T 2gjc_A 67 DVIIVGAGSSGLSAAYVIAKNR------------PDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134 (326)
T ss_dssp SEEEECCSHHHHHHHHHHHHHC------------TTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCE
T ss_pred CEEEECccHHHHHHHHHHHhcC------------CCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccc
Confidence 7999999999999999999761 128899999843211 0
Q ss_pred ---------ccHHHHHHHHHHHHh-cCCEEEecc-eEEEeC------C-----eEEEc--------------CCcEEec-
Q 013810 282 ---------FDDRLRHYATTQLSK-SGVRLVRGI-VKDVDS------Q-----KLILN--------------DGTEVPY- 324 (436)
Q Consensus 282 ---------~~~~~~~~~~~~l~~-~gV~i~~~~-v~~i~~------~-----~v~~~--------------~g~~i~~- 324 (436)
...++...+.+.+.+ .||+++.+. +.++.. + +|.+. ++.++.+
T Consensus 135 ~~g~~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~ 214 (326)
T 2gjc_A 135 DEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELA 214 (326)
T ss_dssp ECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEES
T ss_pred cCCCeEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEe
Confidence 012334445555666 499999874 666531 1 23321 3357899
Q ss_pred --------------ceEEEecCCCCc--hhccc----CCCCCCCCCc----------EEeCCCCCCCCCCCEEEeccccc
Q 013810 325 --------------GLLVWSTGVGPS--TLVKS----LDLPKSPGGR----------IGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 325 --------------D~vi~a~G~~p~--~~~~~----~~l~~~~~G~----------i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
|.||.|+|.... .++.. ++..-.-.|- ..|+..-..+-+|++|++|-.+.
T Consensus 215 G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~ 294 (326)
T 2gjc_A 215 GYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVA 294 (326)
T ss_dssp CCCSSSCCCSSTTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHH
T ss_pred eccccccccccccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHH
Confidence 999999998764 22211 1111000010 11211111126899999999875
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
... |.+..-+....-...|+.||+.|+..
T Consensus 295 ~~~--~~~r~g~~fg~m~~sg~~~a~~~~~~ 323 (326)
T 2gjc_A 295 ELD--GLNRMGPTFGAMALSGVHAAEQILKH 323 (326)
T ss_dssp HHH--TCCBCCSCCHHHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCCCChhhhhhhhhhHHHHHHHHHH
Confidence 321 22222334455667899999888754
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.60 E-value=5.4e-05 Score=77.99 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
...++|+|||||++||+||..|++.|++|+|+|+.+..+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~g 143 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 143 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 456899999999999999999999999999999987644
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.58 E-value=4e-05 Score=74.82 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCCcEEecceEEEecCCCCc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
..+.+.+.+.+++.|++++.++ |++|. ++++ +..+|+++.||.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEECCEEEECCCCCcc
Confidence 3677778888888999999984 77774 3443 2357888999999999998865
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.58 E-value=5.9e-05 Score=79.29 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
...++|+|||||++||+||..|++.|++|+|+|+.+..+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G 314 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 314 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence 346899999999999999999999999999999987644
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00024 Score=68.38 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=63.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-Cc------ccHHHHHHH--------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-SS------FDDRLRHYA-------------- 290 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~~------~~~~~~~~~-------------- 290 (436)
+|+|||||++|+.+|..|++.+ .+|+++++.+.. .. +.+...+.+
T Consensus 7 ~V~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~ 72 (397)
T 2vou_A 7 RIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPS 72 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCC
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccc
Confidence 7999999999999999999866 899999985321 11 222222211
Q ss_pred -----------------------------HHHHHh--cCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCC
Q 013810 291 -----------------------------TTQLSK--SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 291 -----------------------------~~~l~~--~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.+.|.+ .+++++.++ |++++. + .|++.+|+++.+|+||.|.|..
T Consensus 73 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~ 152 (397)
T 2vou_A 73 SSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 152 (397)
T ss_dssp CEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred cceEEEecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcc
Confidence 122222 267787774 777743 3 3667889899999999999987
Q ss_pred Cc
Q 013810 335 PS 336 (436)
Q Consensus 335 p~ 336 (436)
..
T Consensus 153 S~ 154 (397)
T 2vou_A 153 SV 154 (397)
T ss_dssp CH
T ss_pred hh
Confidence 54
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=6e-05 Score=74.10 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=65.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CC--------Ccc--cHHHHHHHHHHHHhcCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL--------SSF--DDRLRHYATTQLSKSGV 299 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l--------~~~--~~~~~~~~~~~l~~~gV 299 (436)
.+|+|||+|+.|+.+|..|.+.+ ++.+|+++++.+ .. +.+ ..++...+.+.+++.||
T Consensus 7 ~~vvIIG~G~aGl~aA~~l~~~g------------~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv 74 (460)
T 1cjc_A 7 PQICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRC 74 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTE
T ss_pred ceEEEECcCHHHHHHHHHHHhcC------------CCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCc
Confidence 48999999999999999998753 347999999864 22 222 23556667778888999
Q ss_pred EEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 300 RLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+. + ...|.+.+ .++.+|.||+|+|..|.
T Consensus 75 ~~~~~~~v----~~~V~~~~-~~~~~d~lVlAtGs~~~ 107 (460)
T 1cjc_A 75 AFYGNVEV----GRDVTVQE-LQDAYHAVVLSYGAEDH 107 (460)
T ss_dssp EEEBSCCB----TTTBCHHH-HHHHSSEEEECCCCCEE
T ss_pred EEEeeeEE----eeEEEecc-ceEEcCEEEEecCcCCC
Confidence 999884 3 12344433 34789999999999863
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.2e-05 Score=79.33 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||||||||.|||+||+.|++.|.+|+|||+...
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~ 39 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV 39 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 47999999999999999999999999999999754
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00048 Score=69.68 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=67.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC--CC-----Cc-----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--IL-----SS----------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~--~l-----~~----------------------- 281 (436)
.|+|||||..|+++|..+++.| .+|.|+++.. +. +.
T Consensus 23 DVIVIGgG~AGl~AAlaLAr~G--------------~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~ 88 (641)
T 3cp8_A 23 DVIVVGAGHAGCEAALAVARGG--------------LHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKA 88 (641)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCC--------------CcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHH
Confidence 7999999999999999999876 8899998752 10 00
Q ss_pred -------------------------cc-HHHHHHHHHHHHh-cCCEEEecceEEEe--CCe---EEEcCCcEEecceEEE
Q 013810 282 -------------------------FD-DRLRHYATTQLSK-SGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVW 329 (436)
Q Consensus 282 -------------------------~~-~~~~~~~~~~l~~-~gV~i~~~~v~~i~--~~~---v~~~~g~~i~~D~vi~ 329 (436)
.+ ..+.+.+.+.+++ .||+++.+.+.++. ++. |.+.+|+++.+|.||+
T Consensus 89 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVL 168 (641)
T 3cp8_A 89 IDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAIL 168 (641)
T ss_dssp HHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEE
T ss_pred HHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEE
Confidence 00 1334455666766 49999877777754 443 6678888999999999
Q ss_pred ecCCCCc
Q 013810 330 STGVGPS 336 (436)
Q Consensus 330 a~G~~p~ 336 (436)
|+|..++
T Consensus 169 ATG~~s~ 175 (641)
T 3cp8_A 169 ACGTFLN 175 (641)
T ss_dssp CCTTCBT
T ss_pred CcCCCCC
Confidence 9997654
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=5.1e-05 Score=74.51 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=65.1
Q ss_pred cEEEECCChHHHHHHHHHHH-HHHHHHHhhhcCCCCccEEEEEeCCCCC---------Cc--ccHHHHHHHHHHHHhcCC
Q 013810 232 HCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEIL---------SS--FDDRLRHYATTQLSKSGV 299 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~-~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~~--~~~~~~~~~~~~l~~~gV 299 (436)
+|+|||+|+.|+.+|..|.+ ... ....+.+|+|+++.+.. +. ...++...+.+.+++.+|
T Consensus 5 ~VvIIG~G~aGl~aA~~L~~~~~~--------~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v 76 (456)
T 1lqt_A 5 YIAIVGSGPSAFFAAASLLKAADT--------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRF 76 (456)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHH--------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTE
T ss_pred EEEEECcCHHHHHHHHHHHhhCcc--------ccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999987 520 00013899999986322 11 223566677778888899
Q ss_pred EEEecceEEEeCCeEEEcCCcEEecceEEEecCCCC
Q 013810 300 RLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 300 ~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+++.+. .+ +..|.++++ ++.+|.||+|+|..+
T Consensus 77 ~~~~~v--~v-~~~v~~~~~-~~~~d~lViAtG~~~ 108 (456)
T 1lqt_A 77 RFFGNV--VV-GEHVQPGEL-SERYDAVIYAVGAQS 108 (456)
T ss_dssp EEEESC--CB-TTTBCHHHH-HHHSSEEEECCCCCE
T ss_pred EEEeeE--EE-CCEEEECCC-eEeCCEEEEeeCCCC
Confidence 999873 12 234555555 478999999999973
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.6e-05 Score=78.11 Aligned_cols=35 Identities=29% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||||||||+|||+||+.|++.|.+|+||||.+.
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~ 41 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 46999999999999999999999999999999754
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00054 Score=69.34 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=67.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
+|+|||||++|+-+|..|++.+ .+|+|+++.+...
T Consensus 25 DVvIVGgG~AGl~aA~~Lar~G--------------~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~ 90 (591)
T 3i3l_A 25 KVAIIGGGPAGSVAGLTLHKLG--------------HDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVK 90 (591)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEE
T ss_pred CEEEECcCHHHHHHHHHHHcCC--------------CCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcc
Confidence 7999999999999999999865 7788887642100
Q ss_pred ---------------------------------cc-cHHHHHHHHHHHHhcCCEEEec-ceEEEeCC-----eEEEc-CC
Q 013810 281 ---------------------------------SF-DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILN-DG 319 (436)
Q Consensus 281 ---------------------------------~~-~~~~~~~~~~~l~~~gV~i~~~-~v~~i~~~-----~v~~~-~g 319 (436)
.+ ...+.+.+.+.+++.||+++.+ +|+++..+ .|.+. +|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G 170 (591)
T 3i3l_A 91 KPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGG 170 (591)
T ss_dssp ECEEEEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETT
T ss_pred cCCcEEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCC
Confidence 00 1234556677777889999998 58888632 36666 66
Q ss_pred --cEEecceEEEecCCCC
Q 013810 320 --TEVPYGLLVWSTGVGP 335 (436)
Q Consensus 320 --~~i~~D~vi~a~G~~p 335 (436)
.++.+|+||.|+|...
T Consensus 171 ~~~~i~AdlVV~AdG~~S 188 (591)
T 3i3l_A 171 ESVTVESDFVIDAGGSGG 188 (591)
T ss_dssp EEEEEEESEEEECCGGGC
T ss_pred ceEEEEcCEEEECCCCcc
Confidence 5799999999999865
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.52 E-value=3.8e-05 Score=78.16 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||||||||+|||+||+.|++.|.+|+|||+...
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 47999999999999999999999999999998753
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.9e-05 Score=76.89 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+||+|||||++|+++|+.|++.|++|+|||+.+.
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~ 66 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDF 66 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 47999999999999999999999999999999753
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.9e-05 Score=74.44 Aligned_cols=51 Identities=10% Similarity=0.002 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC---C---eEEEcCCcEEecceEEEecCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.++.+.+.+.+++.|++++.++ |++|.. + +|++.+|+++.||.||.++++.
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 4677888889999999999995 888753 2 4778889899999999999988
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00041 Score=70.19 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--C-Ce---EEEc--CCc--EEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--S-QK---LILN--DGT--EVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~-~~---v~~~--~g~--~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+++.||+++.++ ++++. + +. |++. +|+ ++.+|.||+|+|...
T Consensus 257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred HHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 34455666777899999985 77774 2 32 5554 675 689999999999754
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.5e-05 Score=78.51 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccc-----CCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-----SLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-----~g~~v~lie~~~~ 96 (436)
+++|+||||||+||++|..|++ .|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 4789999999999999999999 9999999998754
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=97.48 E-value=5.2e-05 Score=77.70 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhcccC------CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~------g~~v~lie~~~ 95 (436)
.+||||||||+|||+||+.|++. |.+|+||||..
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~ 61 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence 47999999999999999999997 99999999864
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00033 Score=67.35 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
.+.+.+.+.+++.|++++.++ |+++.. + .|.+.+| ++.+|.||+|+|.....+.+.++
T Consensus 175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g 238 (405)
T 2gag_B 175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAG 238 (405)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcC
Confidence 344456666777899999974 888752 2 3566677 79999999999987654444443
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00049 Score=65.36 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCEEEec-ceEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcc
Q 013810 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVK 340 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~-~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (436)
+.+.+.+.+++.|++++.+ +|++++. + .|.+.+| ++.+|.||+|+|.....++.
T Consensus 151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~ 209 (372)
T 2uzz_A 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLP 209 (372)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTST
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhcc
Confidence 3344556667789999988 4888753 3 2455566 49999999999976554443
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.4e-05 Score=78.40 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..++|+|||||++|++||..|++.|++|+|+|+.+..+
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~g 372 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIG 372 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccccee
Confidence 45899999999999999999999999999999976643
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00056 Score=65.33 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|.+|+-+|..|++.+ .+|+|+++..
T Consensus 5 dvvIIGaG~~Gl~~A~~La~~G--------------~~V~vie~~~ 36 (389)
T 2gf3_A 5 DVIVVGAGSMGMAAGYQLAKQG--------------VKTLLVDAFD 36 (389)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCC
Confidence 7999999999999999999866 8999999854
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=7.7e-05 Score=76.52 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcc---c-CCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGID---T-SLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~---~-~g~~v~lie~~~~ 96 (436)
.+||||||||+|||+||+.|+ + .|.+|+||||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence 479999999999999999999 6 8999999999763
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0012 Score=66.22 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCEEEecceEEEeC--C----eEEEcCCcEEecceEEEecCCCC
Q 013810 288 HYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+++.||+++.++|++++. + .|.+.+|+++.+|.||.|.|...
T Consensus 169 ~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s 222 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG 222 (538)
T ss_dssp HHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred HHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence 344555666799999888887753 2 46778888899999999999754
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.3e-05 Score=73.42 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~~ 98 (436)
.++|+|||||++|+++|..|++.|+ +|+|+|+.+..+
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~g 41 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 41 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCC
Confidence 4789999999999999999999999 899999987643
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0006 Score=68.45 Aligned_cols=90 Identities=20% Similarity=0.222 Sum_probs=64.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------C-------------ccc------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S-------------SFD------ 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~-------------~~~------ 283 (436)
+|+|||+|++|+.+|..|++.+ .+|+++++.+.+ + .+.
T Consensus 18 dVvIIGaG~aGl~aA~~L~~~G--------------~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~ 83 (542)
T 1w4x_A 18 DVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQE 83 (542)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhc
Confidence 7999999999999999999765 899999984311 1 011
Q ss_pred ----------HHHHHHHHHHHHhcC--CEEEecc-eEEEe--CC----eEEEcCCcEEecceEEEecCCCC
Q 013810 284 ----------DRLRHYATTQLSKSG--VRLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 284 ----------~~~~~~~~~~l~~~g--V~i~~~~-v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+++.+++....++.+ ++++.++ |.+++ ++ .|.+.+|+++.+|.||+|+|...
T Consensus 84 ~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s 154 (542)
T 1w4x_A 84 WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS 154 (542)
T ss_dssp CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred cCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCC
Confidence 234455555555554 5677774 77764 22 46778888999999999999643
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00071 Score=68.29 Aligned_cols=90 Identities=23% Similarity=0.307 Sum_probs=67.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.|+|||+|++|+-+|..|++.+ .+|+|+++.+...
T Consensus 51 DVvIVGaG~aGL~~A~~La~~G--------------~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~ 116 (570)
T 3fmw_A 51 DVVVVGGGPVGLMLAGELRAGG--------------VGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQV 116 (570)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCB
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcc
Confidence 7999999999999999999866 7888888632100
Q ss_pred ------------c---------------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEE--cCC-cEEec
Q 013810 281 ------------S---------------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LIL--NDG-TEVPY 324 (436)
Q Consensus 281 ------------~---------------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~--~~g-~~i~~ 324 (436)
. + ...+.+.+.+.+++.|++++.+. |++++. ++ |++ .+| +++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a 196 (570)
T 3fmw_A 117 AKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRA 196 (570)
T ss_dssp CSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEE
T ss_pred cCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEe
Confidence 0 0 12345666777777899999884 888754 33 445 577 68999
Q ss_pred ceEEEecCCCC
Q 013810 325 GLLVWSTGVGP 335 (436)
Q Consensus 325 D~vi~a~G~~p 335 (436)
|+||.|.|...
T Consensus 197 ~~vV~ADG~~S 207 (570)
T 3fmw_A 197 RYGVGCDGGRS 207 (570)
T ss_dssp SEEEECSCSSC
T ss_pred CEEEEcCCCCc
Confidence 99999999764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00039 Score=71.76 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=25.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVC 90 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~l 90 (436)
.++|+|||||+.|+.+|..|++.|.+|++
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv 522 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQ 522 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence 47899999999999999999998866543
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00074 Score=65.11 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=62.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------ccc---------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFD--------------------- 283 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------~~~--------------------- 283 (436)
.+|+|||||++|+-+|..|++.+ .+|+|+++.+... .+.
T Consensus 24 ~dV~IVGaG~aGl~~A~~La~~G--------------~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~ 89 (407)
T 3rp8_A 24 MKAIVIGAGIGGLSAAVALKQSG--------------IDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGG 89 (407)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcC
Confidence 37999999999999999999866 7888888743210 000
Q ss_pred -------------------------------------HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcE
Q 013810 284 -------------------------------------DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTE 321 (436)
Q Consensus 284 -------------------------------------~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~ 321 (436)
..+.+.+.+.+.+ ++++.++ |++++. + .|++.+|++
T Consensus 90 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~ 167 (407)
T 3rp8_A 90 PLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSS 167 (407)
T ss_dssp CCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCE
T ss_pred CCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCE
Confidence 1222333444433 6777774 777653 3 356788999
Q ss_pred EecceEEEecCCCCc
Q 013810 322 VPYGLLVWSTGVGPS 336 (436)
Q Consensus 322 i~~D~vi~a~G~~p~ 336 (436)
+.+|+||.|.|....
T Consensus 168 ~~a~~vV~AdG~~S~ 182 (407)
T 3rp8_A 168 ASGDLLIAADGSHSA 182 (407)
T ss_dssp EEESEEEECCCTTCS
T ss_pred EeeCEEEECCCcChH
Confidence 999999999997643
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00091 Score=64.23 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|++|+-+|..|++.| .+|+|+++.
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G--------------~~v~v~Er~ 33 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHG--------------IKVTIYERN 33 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CCEEEEecC
Confidence 8999999999999999999876 899999984
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00033 Score=68.69 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=64.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------Cc------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------SS------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------~~------------------------ 281 (436)
+|+|||||++|+.+|..|++.+ .+|+|+++.+.. ..
T Consensus 8 dVvIVGaG~aGl~aA~~La~~G--------------~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~ 73 (453)
T 3atr_A 8 DVLIIGGGFAGSSAAYQLSRRG--------------LKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENK 73 (453)
T ss_dssp SEEEECCSHHHHHHHHHHSSSS--------------CCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhh
Confidence 7999999999999999998654 677777764210 00
Q ss_pred -----------------------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe---EEEc---CCc--EEecce
Q 013810 282 -----------------------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK---LILN---DGT--EVPYGL 326 (436)
Q Consensus 282 -----------------------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~---v~~~---~g~--~i~~D~ 326 (436)
+ ...+.+.+.+.+.+.|++++.++ |+++. ++. |++. +|+ ++.+|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~ 153 (453)
T 3atr_A 74 INGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKV 153 (453)
T ss_dssp EEEEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSE
T ss_pred hcceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCE
Confidence 0 02355666777777899999984 77764 334 4454 676 799999
Q ss_pred EEEecCCCC
Q 013810 327 LVWSTGVGP 335 (436)
Q Consensus 327 vi~a~G~~p 335 (436)
||.|.|...
T Consensus 154 VV~AdG~~s 162 (453)
T 3atr_A 154 VVEATGYSR 162 (453)
T ss_dssp EEECCGGGC
T ss_pred EEECcCCch
Confidence 999999654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0012 Score=68.14 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=39.4
Q ss_pred HHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCchhcccCCCCC
Q 013810 290 ATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
+.+.+++.|++++.++ |+++. +++ |.+.+|.++.+|.||+|+|.....+....++++
T Consensus 423 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lpl 484 (676)
T 3ps9_A 423 VLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPV 484 (676)
T ss_dssp HHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTTCSC
T ss_pred HHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccCCcc
Confidence 3444556799999984 88775 343 455677889999999999987654444444433
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=75.41 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCcEEEEC--CchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 62 KPRVVVLG--SGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 62 ~~~VvIIG--gG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
.++|+||| ||+.|+.+|..|++.|.+|+||++.+ +.-..... .. ...+.+ ..+..++.++.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~--------~~--~~~~~~----~l~~~GV~i~~~~ 592 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFT--------LE--YPNMMR----RLHELHVEELGDH 592 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHT--------TC--HHHHHH----HHHHTTCEEECSE
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccc--------cc--HHHHHH----HHHhCCCEEEcCc
Confidence 46899999 99999999999999999999999876 21100000 00 001111 123468888776
Q ss_pred EeEeEeCCCCEEEEEEe-cCCccc-----------CCCCceeeeccEEEEeCCCCCCC
Q 013810 139 HCAGIDTDNHVVHCETV-TDELRT-----------LEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~-~~g~~~-----------~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
++..++.+ .+.+... .++... ....++.+.+|.||+|+|..|..
T Consensus 593 ~v~~i~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 593 FCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp EEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred EEEEEECC--eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 77888754 3433321 122110 01112248999999999988754
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00077 Score=64.79 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|++|+.+|..|++.+ .+|+|+++.
T Consensus 28 dV~IVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~ 58 (398)
T 2xdo_A 28 NVAIIGGGPVGLTMAKLLQQNG--------------IDVSVYERD 58 (398)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CEEEEEECS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 7999999999999999999765 899999985
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00026 Score=76.04 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||+|+.|+.+|..|++.|.+|+||++.+.+. .. .. ..+..++.++.+ .|
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~-----~~--------------~~-----~l~~~GV~v~~~~~v 339 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS-----AA--------------AA-----QAVADGVQVISGSVV 339 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC-----HH--------------HH-----HHHHTTCCEEETEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc-----hh--------------HH-----HHHhCCeEEEeCCEe
Confidence 3689999999999999999999999999999886531 00 11 123457888776 67
Q ss_pred EeEeC--CCC--EEEEEEe-c---CCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 141 AGIDT--DNH--VVHCETV-T---DELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 141 ~~id~--~~~--~v~~~~~-~---~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
..+.. +++ .+.+... . +|+ +.++.+|.||+|+|..|+.
T Consensus 340 ~~i~~~~~~~v~~v~~~~~~~~~~~G~------~~~i~~D~Vv~a~G~~P~~ 385 (965)
T 2gag_A 340 VDTEADENGELSAIVVAELDEARELGG------TQRFEADVLAVAGGFNPVV 385 (965)
T ss_dssp EEEEECTTSCEEEEEEEEECTTCCEEE------EEEEECSEEEEECCEEECC
T ss_pred EEEeccCCCCEEEEEEEeccccCCCCc------eEEEEcCEEEECCCcCcCh
Confidence 78875 333 3444321 0 131 1279999999999987654
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00067 Score=63.72 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=28.3
Q ss_pred cCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecC
Q 013810 297 SGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G 332 (436)
.|++++.++ |.+++. + .|.+.+|+++.+|.||+|++
T Consensus 122 ~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p 162 (342)
T 3qj4_A 122 SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMP 162 (342)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSC
T ss_pred cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCC
Confidence 489999985 888853 3 35567787789999999987
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=73.38 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|++|||+|+||+.+|.+|++.|.+|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 458999999999999999999999999999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0044 Score=60.58 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|+|+|-.|.+.|..|.+.|++|++||+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 4689999999999999999999999999999874
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00095 Score=66.89 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEe--CC----e--EEEcCC---cEEecceEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVD--SQ----K--LILNDG---TEVPYGLLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~----~--v~~~~g---~~i~~D~vi~a~G~~p 335 (436)
.+.+.+.+.+++.|++++.++ +++++ ++ + +++.++ .++.+|+||.|.|...
T Consensus 121 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 121 KLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp HHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence 445566777778899999984 77774 33 4 444555 6799999999999875
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00055 Score=66.04 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCEEEecc-eE---------EEeC--Ce--EEEcCCcEEecceEEEecCCCCchhcc-cCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VK---------DVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK-SLDL 344 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~---------~i~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~-~~~l 344 (436)
+.+.+.+.+++.|++++.++ |. ++.. +. |.+.+| ++.+|.||+|+|.....+.+ .+++
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~ 246 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGL 246 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCC
Confidence 44555666777899999884 77 6643 22 344455 79999999999987655555 4443
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=65.39 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C---eEEE--cCCc--EEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q---KLIL--NDGT--EVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~---~v~~--~~g~--~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+++.||+++.++ |+++.. + +|.+ .+|+ ++.+|+||.|+|...
T Consensus 113 l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S 172 (512)
T 3e1t_A 113 FDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT 172 (512)
T ss_dssp HHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence 44556667777899999984 777643 3 2444 4574 799999999999864
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0018 Score=62.06 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe--CCeE--EEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~--~~~v--~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
+.+.+.+++.|++++.++ |++++ ++++ .+.+| ++.+|.||+|+|.....+++.++
T Consensus 157 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g 216 (397)
T 2oln_A 157 AALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLG 216 (397)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGT
T ss_pred HHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcC
Confidence 344555667799999884 87774 3344 33344 79999999999987555555444
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0021 Score=65.04 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEe--C-C---eEEEc------CC---------cEEecceEEEecCCCCc
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN------DG---------TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~--~-~---~v~~~------~g---------~~i~~D~vi~a~G~~p~ 336 (436)
.+.+.+.+.+++.||+++.+. +.++. + + +|.+. +| .++.+|.||.|.|....
T Consensus 145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 145 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 455667777888899999994 87774 2 2 25554 33 67999999999998653
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00014 Score=74.46 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCC--------CeEEEEcCCC-cc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL--------YDVVCVSPRN-HM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g--------~~v~lie~~~-~~ 97 (436)
.++|+|||||+|||+||..|++.| ++|+|+|+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 468999999999999999999988 9999999988 65
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=65.46 Aligned_cols=51 Identities=10% Similarity=0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEe--C-C---eEEEc--CCc--EEecceEEEecCCCCc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVD--S-Q---KLILN--DGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~--~-~---~v~~~--~g~--~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+.+++.||+++.++ +.++. + + +|++. +|+ ++.+|.||+|+|-.+.
T Consensus 257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 257 VAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp HHHHHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 34455666778899999985 77773 2 2 35554 664 5899999999997653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0024 Score=66.05 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=38.5
Q ss_pred HHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCc-EEecceEEEecCCCCchhcccCCCCC
Q 013810 290 ATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGT-EVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 290 ~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~-~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
+.+.+++.|++++.++ |+++.. + .|.+.+|+ ++.+|.||+|+|.....+....++++
T Consensus 418 L~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl 480 (689)
T 3pvc_A 418 LMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPL 480 (689)
T ss_dssp HHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSCC
T ss_pred HHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccCCcc
Confidence 3344556789999884 888753 3 35566776 89999999999987655544444443
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0032 Score=62.44 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=64.6
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------------------------- 279 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------------------------- 279 (436)
.+|+|||+|++|+-+|..|++.| .+|+++++.+..
T Consensus 13 ~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 78 (499)
T 2qa2_A 13 ASVIVVGAGPAGLMLAGELRLGG--------------VDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVET 78 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccc
Confidence 37999999999999999999865 556666552100
Q ss_pred --------------------C---cc-cHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcCCc---EEecceE
Q 013810 280 --------------------S---SF-DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILNDGT---EVPYGLL 327 (436)
Q Consensus 280 --------------------~---~~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~g~---~i~~D~v 327 (436)
+ .+ ...+.+.+.+.+.+.|++++.++ +.+++. ++ |++.+++ ++.+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~v 158 (499)
T 2qa2_A 79 STQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYV 158 (499)
T ss_dssp ESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEE
T ss_pred cccceecceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEE
Confidence 0 00 13455566677777899999984 887753 33 4556664 7999999
Q ss_pred EEecCCCC
Q 013810 328 VWSTGVGP 335 (436)
Q Consensus 328 i~a~G~~p 335 (436)
|.|.|...
T Consensus 159 VgADG~~S 166 (499)
T 2qa2_A 159 VGCDGGRS 166 (499)
T ss_dssp EECCCTTC
T ss_pred EEccCccc
Confidence 99999764
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0018 Score=68.45 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEeC--Ce---EEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
..+.+.+++.|++++.++ |++++. ++ |.+.+| ++.+|.||+|+|.....+.+.++
T Consensus 155 ~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g 215 (830)
T 1pj5_A 155 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIG 215 (830)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTT
T ss_pred HHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhC
Confidence 445556667899999884 887753 33 455666 79999999999987655544444
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0036 Score=62.10 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=64.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------ 280 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------ 280 (436)
.+|+|||+|++|+-+|..|++.+ .+|+++++.+...
T Consensus 12 ~dVlIVGaGpaGl~~A~~La~~G--------------~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (500)
T 2qa1_A 12 AAVIVVGAGPAGMMLAGELRLAG--------------VEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVET 77 (500)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCB
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccc
Confidence 37999999999999999999865 5666666521000
Q ss_pred ------------------c------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCc---EEecceE
Q 013810 281 ------------------S------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGT---EVPYGLL 327 (436)
Q Consensus 281 ------------------~------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~---~i~~D~v 327 (436)
. + ...+.+.+.+.+++.|++++.++ +++++ +++ +++.+++ ++.+|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~v 157 (500)
T 2qa1_A 78 STQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYL 157 (500)
T ss_dssp CCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEE
T ss_pred cccccccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEE
Confidence 0 0 12345566677777899999984 87775 344 4455654 7999999
Q ss_pred EEecCCCC
Q 013810 328 VWSTGVGP 335 (436)
Q Consensus 328 i~a~G~~p 335 (436)
|.|.|...
T Consensus 158 VgADG~~S 165 (500)
T 2qa1_A 158 VGCDGGRS 165 (500)
T ss_dssp EECCCTTC
T ss_pred EECCCcch
Confidence 99999764
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00033 Score=70.05 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~ 96 (436)
.+|+||||||+||+.+|.+|++ .+++|+|+|+.+.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 5899999999999999999998 7899999998754
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=61.00 Aligned_cols=91 Identities=21% Similarity=0.330 Sum_probs=62.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccE-EEEEeCCCCCCc------cc---------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSS------FD--------------------- 283 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~-V~lv~~~~~l~~------~~--------------------- 283 (436)
+|+|||+|++|+-+|..|++.+ .+ |+|+++.+.... +.
T Consensus 6 dVvIVGaG~aGl~~A~~L~~~G--------------~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~ 71 (410)
T 3c96_A 6 DILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAI 71 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSE
T ss_pred eEEEECCCHHHHHHHHHHHhCC--------------CCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCC
Confidence 7999999999999999999866 67 888887432100 00
Q ss_pred -----------------------------------HHHHHHHHHHHHh-cC-CEEEecc-eEEEe-CCe--EEEcC---C
Q 013810 284 -----------------------------------DRLRHYATTQLSK-SG-VRLVRGI-VKDVD-SQK--LILND---G 319 (436)
Q Consensus 284 -----------------------------------~~~~~~~~~~l~~-~g-V~i~~~~-v~~i~-~~~--v~~~~---g 319 (436)
..+.+.+.+.+.+ .| ++++.++ |++++ +++ |.+.+ |
T Consensus 72 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~~~~v~v~~~~~~~g 151 (410)
T 3c96_A 72 PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHG 151 (410)
T ss_dssp EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTS
T ss_pred CcceEEEEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEecCCccEEEEecCCCC
Confidence 1334455555655 35 5888884 66664 232 45554 7
Q ss_pred --cEEecceEEEecCCCCc
Q 013810 320 --TEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 320 --~~i~~D~vi~a~G~~p~ 336 (436)
+++.+|+||.|.|....
T Consensus 152 ~~~~~~ad~vV~AdG~~S~ 170 (410)
T 3c96_A 152 KPQALGADVLVGADGIHSA 170 (410)
T ss_dssp CEEEEEESEEEECCCTTCH
T ss_pred CceEEecCEEEECCCccch
Confidence 57999999999998653
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00086 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.702 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHH--HHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDF--IMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~--~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||||+.|+.+|..|++. + .+|+++++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G--------------~~V~v~E~~ 34 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPL--------------WAIDIVEKN 34 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT--------------SEEEEECSS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--------------CCEEEEECC
Confidence 699999999999999999986 5 788888874
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=69.86 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|+||||||+||+.+|.+|++ |.+|+|+|+.+.
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~ 59 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSL 59 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBC
T ss_pred cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 4899999999999999999999 999999999865
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=62.46 Aligned_cols=55 Identities=7% Similarity=0.048 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe--CCe--EEEcCCcEEecceEEEecCCCCchhcccCC
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (436)
..+.+.+++.|++++.++ |+++. +++ |++.+| ++.+|.||+|+|.....+...++
T Consensus 158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g 217 (381)
T 3nyc_A 158 QGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAG 217 (381)
T ss_dssp HHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHT
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhC
Confidence 345556667799999874 77764 333 445555 79999999999986655544444
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00052 Score=69.16 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
.+|+||||||.||+.+|.+|++.+ .+|+|||+.+.
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG 41 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 489999999999999999999987 79999999865
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0073 Score=60.63 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhc-CCEEEecceEEEeC--C----eEEEcCCcEEecceEEEecCCCC
Q 013810 286 LRHYATTQLSKS-GVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 286 ~~~~~~~~l~~~-gV~i~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+.+++. ||+++.++|++++. + .|.+.+|+++.+|.||.|+|...
T Consensus 196 l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S 252 (550)
T 2e4g_A 196 VADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG 252 (550)
T ss_dssp HHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence 445566667777 99999888887752 2 36678888899999999999754
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0006 Score=67.85 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|++|||+|++|+.+|..|++.|.+|+|||+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 458999999999999999999999999999999864
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0047 Score=59.98 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCEEEec----ceEEEe--CCe---EEEcCCcEEecceEEEecCCCCchhc
Q 013810 285 RLRHYATTQLSKSGVRLVRG----IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPSTLV 339 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~----~v~~i~--~~~---v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (436)
.+.+.+.+.+++.|++++.+ +|+++. +++ |++.+|+++.+|.||+|+|.....++
T Consensus 162 ~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~ 225 (438)
T 3dje_A 162 NALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL 225 (438)
T ss_dssp HHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTS
T ss_pred HHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhc
Confidence 34455666677789999987 487774 333 67788888999999999998665443
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0081 Score=59.96 Aligned_cols=48 Identities=25% Similarity=0.334 Sum_probs=36.2
Q ss_pred HHHHHHHHh-cCCEEEecceEEEeC--C----eEEEcCCcEEecceEEEecCCCC
Q 013810 288 HYATTQLSK-SGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 288 ~~~~~~l~~-~gV~i~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+.+.+.+++ .||+++.++|++++. + .|.+.+|+++.+|.||.|.|...
T Consensus 179 ~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S 233 (526)
T 2pyx_A 179 QLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS 233 (526)
T ss_dssp HHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred HHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence 444555666 799999888888752 2 45667877899999999999854
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0054 Score=58.34 Aligned_cols=90 Identities=20% Similarity=0.317 Sum_probs=60.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC-CCC------c-----------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------S----------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~-~l~------~----------------------- 281 (436)
.|+|||||++|+-+|..|++.| .+|+|+++.+ +.. .
T Consensus 6 DViIVGaGpaGl~~A~~La~~G--------------~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~ 71 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYG--------------LKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVK 71 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccc
Confidence 5999999999999999999876 7777777632 100 0
Q ss_pred ---------------------------c-cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CCeEE---E-cCC--cEEec
Q 013810 282 ---------------------------F-DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQKLI---L-NDG--TEVPY 324 (436)
Q Consensus 282 ---------------------------~-~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~~v~---~-~~g--~~i~~ 324 (436)
+ ...+.+.+.+...+.|++++.+. +.++. ++.+. . .++ .++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a 151 (397)
T 3oz2_A 72 GARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRA 151 (397)
T ss_dssp EEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred eEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEE
Confidence 0 12344556666777899999884 65543 33322 1 233 35899
Q ss_pred ceEEEecCCCC
Q 013810 325 GLLVWSTGVGP 335 (436)
Q Consensus 325 D~vi~a~G~~p 335 (436)
|+||-|.|...
T Consensus 152 ~~vIgAdG~~S 162 (397)
T 3oz2_A 152 KMVIAADGFES 162 (397)
T ss_dssp EEEEECCCTTC
T ss_pred eEEEeCCcccc
Confidence 99999999754
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0011 Score=65.76 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=60.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------cc---cHHHHHHHHHHHHhc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SF---DDRLRHYATTQLSKS 297 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~~---~~~~~~~~~~~l~~~ 297 (436)
+|+|||+|+.|+.+|..|++ . .+|+|+++.+.+. .+ ..++...+.+.+ +.
T Consensus 110 dVvIIGgG~aGl~aA~~L~~--------------~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~ 173 (493)
T 1y56_A 110 DVAIIGGGPAGIGAALELQQ--------------Y-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NE 173 (493)
T ss_dssp SCCEECCSHHHHHHHHHHTT--------------T-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CT
T ss_pred CEEEECccHHHHHHHHHHHh--------------c-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hc
Confidence 79999999999999999974 2 6899999864221 11 122223333334 56
Q ss_pred CCEEEecc-eEEEeC--CeEEE---cCCc--EEecceEEEecCCCCc
Q 013810 298 GVRLVRGI-VKDVDS--QKLIL---NDGT--EVPYGLLVWSTGVGPS 336 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~~v~~---~~g~--~i~~D~vi~a~G~~p~ 336 (436)
+|+++.+. +.+++. ..+.+ .+++ ++.+|.+|+|+|..|.
T Consensus 174 ~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~ 220 (493)
T 1y56_A 174 NTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS 220 (493)
T ss_dssp TEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC
T ss_pred CCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc
Confidence 89988774 665543 22322 4454 6899999999998775
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0086 Score=59.46 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCEEEecceEEEeC--C----eEEEcCCcEEecceEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGIVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+.+.+.+.+++.||+++.++|++++. + .|++.+|+++.+|.||.|.|...
T Consensus 174 ~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S 230 (511)
T 2weu_A 174 EVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG 230 (511)
T ss_dssp HHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred HHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence 344455666667899999888777753 2 36677888899999999999754
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00073 Score=67.17 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
.+|++|||+|++|+.+|..|++.|.+|+|||+.....
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 4799999999999999999999999999999987543
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=67.07 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~ 95 (436)
.+|+||||||.||+.+|.+|++ .+.+|+|||+.+
T Consensus 19 ~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 4899999999999999999997 589999999986
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0084 Score=59.43 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCEEEecc-eEEEeC--C--eEEEc---CCc--EEecceEEEecCCCCchhcc
Q 013810 286 LRHYATTQLSKSGVRLVRGI-VKDVDS--Q--KLILN---DGT--EVPYGLLVWSTGVGPSTLVK 340 (436)
Q Consensus 286 ~~~~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~---~g~--~i~~D~vi~a~G~~p~~~~~ 340 (436)
+...+.+.+.+.|++++.++ |+++.. + +|.+. +|+ ++.+|.||.|+|.....+..
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~ 215 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFD 215 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHH
Confidence 34455666677899999874 777743 2 35553 565 79999999999987665544
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00081 Score=67.59 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~~ 97 (436)
.+|+||||||.||+.+|.+|++ .+.+|+|||+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence 3799999999999999999998 78999999998653
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.012 Score=58.57 Aligned_cols=51 Identities=22% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEEeC---C---eEEEc-CCc--EEecc-eEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDVDS---Q---KLILN-DGT--EVPYG-LLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i~~---~---~v~~~-~g~--~i~~D-~vi~a~G~~p 335 (436)
.+.+.+.+.+++.||+++.++ ++++.. + +|++. +++ ++.+| .||+|+|-..
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 344556666777899999984 777642 2 35554 343 58996 9999999655
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.002 Score=65.25 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~~ 97 (436)
..+|++|||+|+||+.+|..|++ .|.+|+|||+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence 35899999999999999999999 89999999998653
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0017 Score=65.24 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~~ 96 (436)
.+|++|||+|++|+.+|.+|++. +.+|+|||+...
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~ 48 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPD 48 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 48999999999999999999997 899999999854
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.011 Score=57.98 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe--CCeE---EEc-CCcEEecceEEEecCCCCc
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD--SQKL---ILN-DGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~--~~~v---~~~-~g~~i~~D~vi~a~G~~p~ 336 (436)
+.+.+.+++.||+++.++ + ++. ++.+ .+. ++.++.+|.||+|+|..+.
T Consensus 123 ~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 123 NFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp HHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGG
T ss_pred HHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcc
Confidence 444555566799999886 8 773 3433 443 3335789999999998775
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0035 Score=50.43 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+.+|+|+|+|.-|...|..|.+.|++|+++|+++
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 34689999999999999999999999999999874
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0092 Score=60.01 Aligned_cols=57 Identities=12% Similarity=0.016 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEcC---C--cEEecceEEEecCCCCchhcccCCC
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILND---G--TEVPYGLLVWSTGVGPSTLVKSLDL 344 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~~---g--~~i~~D~vi~a~G~~p~~~~~~~~l 344 (436)
..+.+.+.+.|++++.+. |+++. ++ +|++.+ | .++.+|.||.|+|.....+.+..+.
T Consensus 174 ~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~ 241 (561)
T 3da1_A 174 LEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRS 241 (561)
T ss_dssp HHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTC
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCC
Confidence 344455667899999884 77764 33 355543 3 4689999999999876555555544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0034 Score=50.51 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|+|+|+|.-|...|..|.+.|++|+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999863
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0044 Score=50.84 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.012 Score=60.28 Aligned_cols=51 Identities=20% Similarity=0.181 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCC--EEEecc-eEEEeCC------e--EEEc------CC--cEEecceEEEecCCCC
Q 013810 285 RLRHYATTQLSKSGV--RLVRGI-VKDVDSQ------K--LILN------DG--TEVPYGLLVWSTGVGP 335 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV--~i~~~~-v~~i~~~------~--v~~~------~g--~~i~~D~vi~a~G~~p 335 (436)
.+.+.+.+.+++.|+ +++.++ +++++.+ . |++. +| +++.+|+||.|.|...
T Consensus 142 ~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 142 RVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp HHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 455667777888876 888884 7777521 2 3343 46 4699999999999765
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0048 Score=50.41 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+.+|+|+|+|..|...|..|.+.|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999986
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0049 Score=49.21 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||+|..|...|..|.+.|++|+++|+++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3689999999999999999999999999999863
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0055 Score=47.23 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~ 95 (436)
+++|+|+|+|..|..++..|.+.| ++|+++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence 368999999999999999999999 8999999863
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0085 Score=52.15 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|...|..|.+.|.+|+||+++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4578999999999999999999999999999985
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0076 Score=58.86 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||.|.+|+++|..|.++|++|++.|.+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 45799999999999999999999999999999864
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.052 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.674 Sum_probs=20.3
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
+|+|||+|++|+-+|..|++.+
T Consensus 28 dVlIVGaGpaGl~~A~~La~~G 49 (549)
T 2r0c_A 28 DVLILGGGPVGMALALDLAHRQ 49 (549)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHCC
Confidence 7999999999999999999854
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.011 Score=55.09 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
++++|+|||+|..|.+.|..|++.|+ +|+|+|.++.
T Consensus 8 ~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~ 44 (331)
T 1pzg_A 8 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 44 (331)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 34689999999999999999999888 9999998753
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0086 Score=53.36 Aligned_cols=38 Identities=5% Similarity=-0.053 Sum_probs=31.8
Q ss_pred CCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
++.++||++||++.. ..+..|+.+|+.||+.|....+.
T Consensus 292 ~~~~~v~l~GDa~~g----------~gv~~A~~sG~~aA~~I~~~L~~ 329 (336)
T 3kkj_A 292 DADLGIYVCGDWCLS----------GRVEGAWLSGQEAARRLLEHLQL 329 (336)
T ss_dssp ETTTTEEECCGGGTT----------SSHHHHHHHHHHHHHHHHHHTTC
T ss_pred eCCCCEEEEecccCC----------cCHHHHHHHHHHHHHHHHHHhhc
Confidence 567899999999864 35888999999999999876654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0083 Score=48.04 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+++|+|+|+|..|...|..|.+.|++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999986
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0084 Score=53.95 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||||..|...|..|.+.|.+|+||+++.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 34789999999999999999999999999999753
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.015 Score=50.68 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=50.4
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+++|+|||||.+|...+..|.+.+ .+|+++.+. ..+++ .+...+.+|+++.....
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~G--------------A~VtVvap~-----~~~~l----~~l~~~~~i~~i~~~~~-- 85 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEG--------------AAITVVAPT-----VSAEI----NEWEAKGQLRVKRKKVG-- 85 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGC--------------CCEEEECSS-----CCHHH----HHHHHTTSCEEECSCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEECCC-----CCHHH----HHHHHcCCcEEEECCCC--
Confidence 358999999999999999998766 899999763 23343 33344556776643211
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
++.--.+|+||.|||....
T Consensus 86 --------~~dL~~adLVIaAT~d~~~ 104 (223)
T 3dfz_A 86 --------EEDLLNVFFIVVATNDQAV 104 (223)
T ss_dssp --------GGGSSSCSEEEECCCCTHH
T ss_pred --------HhHhCCCCEEEECCCCHHH
Confidence 1111248999999997654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=57.49 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|+|||.|.+|+++|..|.++|++|+++|....
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSS
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCC
Confidence 36899999999999999999999999999997654
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.015 Score=58.84 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+++||+|||+|..|...|..|++.|.+|++||++++.+.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg 45 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG 45 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence 369999999999999999999999999999999988644
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.052 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.8
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
.|+|||+|++|+-+|..|.+.+
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~ 62 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDAL 62 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred cEEEEcccHHHHHHHHHHHhcC
Confidence 5999999999999999998765
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.019 Score=48.40 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~~v~lie~~~ 95 (436)
..+|+|||+|..|...|..|.+. |++|+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 46899999999999999999998 99999999874
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.099 Score=53.60 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=19.2
Q ss_pred cEEEECCChHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSD 251 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~ 251 (436)
.|+|||+|++|+-+|..|++
T Consensus 10 dVlIVGaGpaGL~lA~~La~ 29 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSE 29 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred cEEEECcCHHHHHHHHHHhc
Confidence 69999999999999999998
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.027 Score=51.73 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 49 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 49 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 36799999999999999999999999999998743
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.02 Score=49.82 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 369999999999999999999999999999864
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.027 Score=53.52 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|||+|.+|+.+|..|...|.+|+++|+.+.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 224 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA 224 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.032 Score=50.71 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998753
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.032 Score=44.87 Aligned_cols=34 Identities=12% Similarity=0.264 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||+|..|...|..|.+.|++|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 4689999999999999999999999999999863
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.029 Score=52.79 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|||+|.+|+.+|..|...|.+|+++|+++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~ 218 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE 218 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999999999999999999999998753
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.047 Score=55.31 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
-|.|.||.+.| +++|++||+|+|++...+.....-......++-.|++|++++....
T Consensus 359 ~GGi~vd~~~~-~~IpGLyAaGe~a~~g~hGanrl~gnsl~~~~vfGr~Ag~~aa~~~ 415 (602)
T 1kf6_A 359 MGGIETDQNCE-TRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERA 415 (602)
T ss_dssp CCEEECCTTSB-CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCc-cccCCEEEccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999 7999999999998421111111112234567777999999887653
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.035 Score=52.33 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+|||||..|..+|+.+++.|++|+++|+++.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 47899999999999999999999999999997654
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.027 Score=51.85 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|.|||+|.-|...|..++..|++|+|+|.++.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~ 40 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR 40 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 36899999999999999999999999999998754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.039 Score=51.07 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence 689999999999999999999999999999864
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.027 Score=55.63 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
|+|+|||+|..|+-+|..|++.| .+|+++++.+
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G--------------~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAG--------------IPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--------------CCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--------------CcEEEEccCC
Confidence 38999999999999999999876 8999999854
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.043 Score=50.98 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHH-HHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCR-LMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~-aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|.|||.|.+|++ +|..|.++|++|++.|.+..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~ 39 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY 39 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 478999999999997 78899999999999998643
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.15 Score=47.22 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=52.4
Q ss_pred CcEEEECCChHHHH-HHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEE
Q 013810 231 LHCVVVGGGPTGVE-FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (436)
Q Consensus 231 ~~vvViG~G~~g~e-~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~ 308 (436)
++|.|||.|-+|+. +|..|.+.| .+|++.+..... . ..+.|++.||+++.+. ...
T Consensus 5 ~~i~~iGiGg~Gms~~A~~L~~~G--------------~~V~~~D~~~~~-----~----~~~~L~~~gi~v~~g~~~~~ 61 (326)
T 3eag_A 5 KHIHIIGIGGTFMGGLAAIAKEAG--------------FEVSGCDAKMYP-----P----MSTQLEALGIDVYEGFDAAQ 61 (326)
T ss_dssp CEEEEESCCSHHHHHHHHHHHHTT--------------CEEEEEESSCCT-----T----HHHHHHHTTCEEEESCCGGG
T ss_pred cEEEEEEECHHHHHHHHHHHHhCC--------------CEEEEEcCCCCc-----H----HHHHHHhCCCEEECCCCHHH
Confidence 48999999999997 888888776 999999985321 1 2345777899987652 110
Q ss_pred EeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 309 VDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 309 i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+ .+ ..+|+||+++|..++
T Consensus 62 l-------~~---~~~d~vV~Spgi~~~ 79 (326)
T 3eag_A 62 L-------DE---FKADVYVIGNVAKRG 79 (326)
T ss_dssp G-------GS---CCCSEEEECTTCCTT
T ss_pred c-------CC---CCCCEEEECCCcCCC
Confidence 0 00 148999999999886
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.04 Score=51.77 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
..+|||+|||.||+.+|..|...|. +|+++|++
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF 221 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence 4789999999999999999999999 89999987
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.045 Score=50.32 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.|||+|..|...|..|.+.|++|+++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 589999999999999999999999999999864
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.057 Score=49.72 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|.|||.|.-|...|..|++.|++|+++|+++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 55 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS 55 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 347899999999999999999999999999998753
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.052 Score=51.88 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|||+|.+|+.+|..++..|.+|+++|++..
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~ 206 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 206 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998743
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.06 Score=49.59 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
..++|.|||+|..|.+.|..|+..|+ +|+|+|..
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 35789999999999999999999999 99999986
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.051 Score=50.62 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.++|.|||+|.-|.+.|..|++.|++|++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence 368999999999999999999999999999974
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.053 Score=50.88 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|.|||+|..|...|..|++.|++|+++++++
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.061 Score=50.56 Aligned_cols=36 Identities=22% Similarity=0.125 Sum_probs=32.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|.|||+|.-|.+.|..|++.|++|+++++++.
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~ 63 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD 63 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 346899999999999999999999999999998643
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.055 Score=49.96 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
++|+|||+|..|...|..|++.|+ +|+++|++.
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 689999999999999999999998 999999864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.045 Score=50.44 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~ 35 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD 35 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence 579999999999999999999999999999863
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=93.44 E-value=0.064 Score=51.01 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...+|+|||+|.+|+.+|..++..|.+|+++|+.+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~ 206 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 206 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357899999999999999999999999999998743
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.064 Score=51.65 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+.+|.|||.|+.||..|..+++.|++|+.+|-++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~ 54 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP 54 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 45789999999999999999999999999999653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.058 Score=52.45 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence 589999999999999999999999999999874
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.14 Score=49.67 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 347899999999999999999999999999998754
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.053 Score=50.88 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
...+|||+|+|.||..+|..|...|. +|+++|++
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 34799999999999999999999998 79999987
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=93.40 E-value=0.095 Score=51.02 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=58.5
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+++|+|||.|.+|+-+|..|.+.| .+|+..+..... .+ ...+.|++.||+++.+.-.+
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G--------------~~V~~~D~~~~~--~~-----~~~~~L~~~gi~~~~g~~~~- 66 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLG--------------AIVTVNDGKPFD--EN-----PTAQSLLEEGIKVVCGSHPL- 66 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTT--------------CEEEEEESSCGG--GC-----HHHHHHHHTTCEEEESCCCG-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCC--------------CEEEEEeCCccc--CC-----hHHHHHHhCCCEEEECCChH-
Confidence 358999999999999999998876 999999985321 01 12346777899998763100
Q ss_pred eCCeEEEcCCcEEe-cceEEEecCCCCc-hh---cccCCCC
Q 013810 310 DSQKLILNDGTEVP-YGLLVWSTGVGPS-TL---VKSLDLP 345 (436)
Q Consensus 310 ~~~~v~~~~g~~i~-~D~vi~a~G~~p~-~~---~~~~~l~ 345 (436)
. ..-. +|+||+++|..++ +. +++.|++
T Consensus 67 ---~------~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~ 98 (451)
T 3lk7_A 67 ---E------LLDEDFCYMIKNPGIPYNNPMVKKALEKQIP 98 (451)
T ss_dssp ---G------GGGSCEEEEEECTTSCTTSHHHHHHHHTTCC
T ss_pred ---H------hhcCCCCEEEECCcCCCCChhHHHHHHCCCc
Confidence 0 0012 7999999999886 43 3445554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=93.38 E-value=0.055 Score=48.08 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
..+|+|||+|-.|..+|..|++.|. +++|+|++.
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 3689999999999999999999997 799999874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.066 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
.++|+|||+|..|.+.|..|++.|+ +|+++|.++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~ 39 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG 39 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence 3689999999999999999999998 9999998753
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.078 Score=49.03 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
.++|+|||+|..|...|..|+..|+ +|+|+|.+..
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~ 39 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 39 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 3689999999999999999999888 9999997643
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.057 Score=52.64 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|||||..|...|..|.+.|.+|+|++++.
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~ 45 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCC
Confidence 4789999999999999999999999999999863
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.078 Score=45.65 Aligned_cols=35 Identities=11% Similarity=0.259 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|.|||+|..|.+.|..|++.|++|+++++++.
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46899999999999999999999999999998754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.068 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
+++|.|||.|..|+..|..|++. |++|+++|+++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 36899999999999999999997 79999999764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.076 Score=48.08 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+|.|||+|.-|...|..|.+.|++|+++++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence 699999999999999999999999999998753
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.085 Score=48.74 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
..++|+|||+|..|.+.|..|+..++ +++|+|..+.
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~ 42 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG 42 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 34689999999999999999999888 9999998754
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.077 Score=51.99 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~ 41 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ 41 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 689999999999999999999999999999764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.085 Score=51.50 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccC-CC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS-LY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~-g~-~v~lie~~~~ 96 (436)
.++|.|||+|.-|+..|..|++. |+ +|+++|+++.
T Consensus 18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 36899999999999999999999 99 9999998754
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.081 Score=48.92 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 64 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTP 64 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence 34689999999999999999999999999999874
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=92.85 E-value=0.075 Score=50.07 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+|+|+|+|.+|+.++..|+..|.+|+++|+++
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 789999999999999999999999999999864
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.091 Score=48.72 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
++|+|||+|..|.+.|..|+..|+ +|+|+|.+..
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~ 49 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG 49 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence 589999999999999999999998 9999998753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.086 Score=48.12 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|.|||.|.-|...|..|++.|++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998754
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.12 Score=51.57 Aligned_cols=56 Identities=13% Similarity=0.015 Sum_probs=38.4
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhh
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
-|.|.||.+.| |++|++||+|+|+....+...+.-......|+--|+.|++++...
T Consensus 354 ~GGi~vd~~~~-t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 354 CGGVMVDDHGR-TDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp SCEEECCTTCB-CSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEECCCCC-CccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence 46799999999 899999999999842111111111234456777788888888654
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.097 Score=50.32 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|.|||.|..|+..|..|++ |++|+++|+++.
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~ 69 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA 69 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence 34689999999999999999998 999999998753
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.088 Score=46.07 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=31.3
Q ss_pred CCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+.++|+|.|| |.-|...+..|.+.|++|++++++.
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~ 55 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE 55 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence 3578999998 9999999999999999999998864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.69 E-value=0.097 Score=47.21 Aligned_cols=34 Identities=12% Similarity=0.294 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|+|.|+|+-|-..+..|.+.|++|+++.+++
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence 3689999999999999999999999999998864
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.075 Score=51.36 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||||++|+-+|..|++.| .+|+|+++.
T Consensus 24 ~ViIVGaGpaGl~~A~~La~~G--------------~~V~viE~~ 54 (430)
T 3ihm_A 24 RIGIVGAGTAGLHLGLFLRQHD--------------VDVTVYTDR 54 (430)
T ss_dssp EEEEECCHHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred CEEEECCcHHHHHHHHHHHHCC--------------CeEEEEcCC
Confidence 7999999999999999999876 999999985
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.096 Score=48.34 Aligned_cols=34 Identities=15% Similarity=0.362 Sum_probs=30.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
+++|+|||+|..|.+.|..|+..++ +++|+|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 4689999999999999999998887 899999764
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.11 Score=47.77 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
..++|.|||.|.-|-+.|..|++.|+ +|+++|+++
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~ 68 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 68 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence 34789999999999999999999999 999999874
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.077 Score=48.88 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
.+++|.|||.|.-|...|..|.+.|+ +|+++|++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 35789999999999999999999999 99999986
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.19 Score=49.45 Aligned_cols=32 Identities=34% Similarity=0.439 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.+|+|||+|.+|+.+|..|++.+ .+|+++++.
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g--------------~~v~vlE~~ 65 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAG--------------HQVTVLEAS 65 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHT--------------CEEEEECSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 48999999999999999999876 899999874
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.1 Score=47.91 Aligned_cols=33 Identities=15% Similarity=0.384 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
++|+|||+|..|...|..|+..|+ +|+|+|.+.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~ 36 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE 36 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence 589999999999999999999886 899999764
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.094 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
++|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 379999999999999999999998 999999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.099 Score=47.21 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+++|+|.|+|+-|...+..|.+.|++|+++++...
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 36899999999999999999999999999988643
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.062 Score=46.71 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEE-EcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVC-VSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~l-ie~~~~ 96 (436)
+++|.|||+|.-|.+.|..|.+.|++|++ +++++.
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~ 58 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA 58 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence 46899999999999999999999999998 887643
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.06 Score=49.15 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|||+|.-|.+.|..|++.|++|++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence 589999999999999999999999999999874
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.12 Score=47.64 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
.++|.|||+|..|.+.|..|+..++ +++|+|..+.
T Consensus 5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~ 40 (321)
T 3p7m_A 5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG 40 (321)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence 4689999999999999999998887 9999998753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=0.1 Score=48.11 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~ 94 (436)
++++|+|||+|..|.+.|..|...++ ++.|+|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 34689999999999999999988774 79999975
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.093 Score=50.34 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+.+|+|||.|..|...|..|.+.|++|++||.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46799999999999999999999999999998754
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.15 Score=52.21 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=38.8
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
-|.|.||.+.| +++|++||+|+|+....+...+.-..+...++--|++|++++....
T Consensus 372 ~GGi~vd~~~~-v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~ 428 (660)
T 2bs2_A 372 MGGIRTDYRGE-AKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHC 428 (660)
T ss_dssp CCEEECCTTSB-CSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEECCCCc-eecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999 7999999999986421111111112334567777899888887654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.12 Score=47.53 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=29.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|||+|.-|.+.|..|+ .|.+|+++++++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~ 34 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ 34 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence 68999999999999999999 999999999874
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.13 Score=47.07 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 42 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP 42 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=92.24 E-value=0.17 Score=47.93 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+|||+|.-|...+..+++.|++|+++|+.+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 357899999999999999999999999999998654
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.083 Score=46.29 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=29.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+.+|+|+|+|..|...|..|.+.|+ |+++|+++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~ 41 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN 41 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence 4689999999999999999999999 99999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.12 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|+|+|..|..+|..|+..|.+|+++|+++
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4789999999999999999999999999999863
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.12 Score=47.86 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.++|+|||+|..|.+.|..|+..|+ +++++|...
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~ 40 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK 40 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence 4689999999999999999998887 899999853
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.07 E-value=0.14 Score=49.87 Aligned_cols=35 Identities=26% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~ 71 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK 71 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 46899999999999999999999999999998753
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.06 E-value=0.31 Score=44.60 Aligned_cols=74 Identities=20% Similarity=0.300 Sum_probs=46.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~ 311 (436)
+|+|||+|.+|.-+|..|+ .+ .+|+++.|++ +-. +.+++.|+.+..........
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g--------------~~V~~~~r~~-------~~~----~~l~~~G~~~~~~~~~~~~~ 57 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LY--------------HDVTVVTRRQ-------EQA----AAIQSEGIRLYKGGEEFRAD 57 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TT--------------SEEEEECSCH-------HHH----HHHHHHCEEEEETTEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHh-cC--------------CceEEEECCH-------HHH----HHHHhCCceEecCCCeeccc
Confidence 7999999999999999998 55 8999998852 211 23455677765332111111
Q ss_pred CeEEEcCCcEEecceEEEecCC
Q 013810 312 QKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+.......-++|+||+|+-.
T Consensus 58 --~~~~~~~~~~~D~vilavK~ 77 (307)
T 3ego_A 58 --CSADTSINSDFDLLVVTVKQ 77 (307)
T ss_dssp --CEEESSCCSCCSEEEECCCG
T ss_pred --ccccccccCCCCEEEEEeCH
Confidence 11111112357888888754
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.49 Score=43.52 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=50.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec---ceEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKD 308 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~---~v~~ 308 (436)
+|+|||+|.+|.-+|..|++.+ .+|+++.|++ . +.+++.|+.+... ...
T Consensus 4 kI~IiGaGaiG~~~a~~L~~~g--------------~~V~~~~r~~--------~-----~~i~~~Gl~~~~~~~g~~~- 55 (320)
T 3i83_A 4 NILVIGTGAIGSFYGALLAKTG--------------HCVSVVSRSD--------Y-----ETVKAKGIRIRSATLGDYT- 55 (320)
T ss_dssp EEEEESCCHHHHHHHHHHHHTT--------------CEEEEECSTT--------H-----HHHHHHCEEEEETTTCCEE-
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CeEEEEeCCh--------H-----HHHHhCCcEEeecCCCcEE-
Confidence 8999999999999999998765 8999998852 1 3455567766541 111
Q ss_pred EeCCeEEEcCCcE-E-ecceEEEecCCCCc
Q 013810 309 VDSQKLILNDGTE-V-PYGLLVWSTGVGPS 336 (436)
Q Consensus 309 i~~~~v~~~~g~~-i-~~D~vi~a~G~~p~ 336 (436)
+..-.+ +.+-.+ . .+|+||+|+-....
T Consensus 56 ~~~~~~-~~~~~~~~~~~DlVilavK~~~~ 84 (320)
T 3i83_A 56 FRPAAV-VRSAAELETKPDCTLLCIKVVEG 84 (320)
T ss_dssp ECCSCE-ESCGGGCSSCCSEEEECCCCCTT
T ss_pred Eeeeee-ECCHHHcCCCCCEEEEecCCCCh
Confidence 111111 122222 2 68999999876654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.02 E-value=0.41 Score=37.97 Aligned_cols=76 Identities=22% Similarity=0.251 Sum_probs=49.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
.+++|+|.|..|..+|..|.+.+ .+|+++++++ +..+ .+++.|+.++.+...+.+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g--------------~~v~vid~~~-------~~~~----~~~~~g~~~i~gd~~~~~ 62 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASD--------------IPLVVIETSR-------TRVD----ELRERGVRAVLGNAANEE 62 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCH-------HHHH----HHHHTTCEEEESCTTSHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--------------CCEEEEECCH-------HHHH----HHHHcCCCEEECCCCCHH
Confidence 38999999999999999998766 8999999852 2222 344568877654211100
Q ss_pred CCeEEEcCCcEEecceEEEecCCCC
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+ +..-..-.+|.+|++++...
T Consensus 63 ---~-l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 63 ---I-MQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp ---H-HHHTTGGGCSEEEECCSCHH
T ss_pred ---H-HHhcCcccCCEEEEECCChH
Confidence 0 00001135899999988654
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.01 E-value=0.14 Score=46.60 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+++|.|||+|.-|-..|..|+ .|++|+++|+++.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~ 45 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK 45 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence 3589999999999999999999 9999999998753
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.14 Score=47.16 Aligned_cols=34 Identities=15% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|.|||+|.-|...|..|.+.|++|+++++++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 3689999999999999999999999999999864
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.13 Score=49.37 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=29.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|.+|+-+|..|++.+ .+|+++++.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--------------~~V~vlE~~~ 33 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNG--------------HEIIVLEKSA 33 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeCCC
Confidence 7999999999999999999866 8999999853
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.1 Score=48.58 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=30.5
Q ss_pred CCCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+++|+|.|| |+-|...+..|.+.|++|+++++...
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~ 54 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS 54 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 34578999999 99999999999999999999988653
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.13 Score=46.15 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.++++|+|+|-+|.++|..|.+.|.+|++++++
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~ 151 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 151 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence 468999999999999999999999999999886
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.14 Score=45.85 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++++|||+|-+|-++|..|.+.|.+|+|+.|..
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5789999999999999999999998999998864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.14 Score=44.34 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=30.9
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|+|.|| |..|...+..|.+.|++|+++++++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence 368999996 9999999999999999999999864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.87 E-value=0.14 Score=47.42 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=30.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~ 94 (436)
..++|+|||+|..|.++|..|...|+ +++|+|..
T Consensus 18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~ 53 (331)
T 4aj2_A 18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI 53 (331)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 45789999999999999999988887 89999975
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.1 Score=49.20 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|.|||+|.-|.+.|..|.+.|++|+++++++
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 89999999999999999999999999999864
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=0.13 Score=48.69 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
...+|+|||+|..|..+|..++..|.+|+++|+.+
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35789999999999999999999999999999864
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.086 Score=48.46 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred CcEEEECCchHHHHHHHhcccC-----C-CeEEEEcC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS-----L-YDVVCVSP 93 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~-----g-~~v~lie~ 93 (436)
++|.|||+|.-|...|..|.+. | ++|+++++
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence 5899999999999999999998 9 99999987
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.11 Score=50.27 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|.|||+|..|+..|..|++.|++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999864
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.14 Score=45.23 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=32.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|.|||+|.-|.+.|..|.+.|++|+++++++.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~ 53 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK 53 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 357899999999999999999999999999998743
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.14 Score=46.81 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++|.|||.|.-|...|..|++.|++|+++|+++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999874
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.15 Score=46.77 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=29.9
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
++|+|||+|..|.+.|..|++. +++|+++|.++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~ 36 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence 3799999999999999999874 789999998753
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.15 Score=48.74 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|.|||+|..|+..|..|++ |++|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~ 32 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP 32 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence 69999999999999999999 99999999864
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.17 Score=46.20 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
.++|+|||+|.+|.++|..|.+.|. +|+|+++.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~ 174 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRT 174 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4689999999999999999999998 89999886
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.17 Score=42.82 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.5
Q ss_pred CcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|+|+|| |.-|...+..|.+.|++|+++++++
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence 68999999 9999999999999999999998864
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.16 Score=46.85 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=29.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.++|+|||+|..|.+.|..|+..+. +++++|.+.
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~ 41 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4689999999999999999988665 799999863
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.2 Score=45.32 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.7
Q ss_pred CcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.|||+ |.-|...|..|.+.|++|+++++++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 68999999 9999999999999999999999864
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.14 Score=49.00 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|.+|+-+|..|++.+ .+|+++++.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--------------~~V~vlE~~~ 33 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAG--------------HEVEVFERLP 33 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CceEEEeCCC
Confidence 6999999999999999999866 8999999854
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.49 E-value=0.48 Score=43.59 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=46.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~ 311 (436)
+|+|||+|..|.-+|..|++.+ .+|+++ +. ++.. +.+++.|+.+..........
T Consensus 21 kI~IiGaGa~G~~~a~~L~~~G--------------~~V~l~-~~-------~~~~----~~i~~~g~~~~~~~~~~~~~ 74 (318)
T 3hwr_A 21 KVAIMGAGAVGCYYGGMLARAG--------------HEVILI-AR-------PQHV----QAIEATGLRLETQSFDEQVK 74 (318)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT--------------CEEEEE-CC-------HHHH----HHHHHHCEEEECSSCEEEEC
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CeEEEE-Ec-------HhHH----HHHHhCCeEEEcCCCcEEEe
Confidence 8999999999999999998765 799999 53 1222 23444566654221111010
Q ss_pred CeEEEcCCcE-EecceEEEecCCCC
Q 013810 312 QKLILNDGTE-VPYGLLVWSTGVGP 335 (436)
Q Consensus 312 ~~v~~~~g~~-i~~D~vi~a~G~~p 335 (436)
-.+ ..+-+. -.+|+||+|+....
T Consensus 75 ~~~-~~~~~~~~~~D~vilavk~~~ 98 (318)
T 3hwr_A 75 VSA-SSDPSAVQGADLVLFCVKSTD 98 (318)
T ss_dssp CEE-ESCGGGGTTCSEEEECCCGGG
T ss_pred eee-eCCHHHcCCCCEEEEEccccc
Confidence 011 122111 25899999987653
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.15 Score=47.09 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
..++|+|||+|..|.++|..|+..++ +++|+|...
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~ 44 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK 44 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence 34789999999999999999998777 899999853
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.16 Score=47.62 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|.+|+-+|..|++.+ .+|+|+++.
T Consensus 8 dVvVIG~Gi~Gls~A~~La~~G--------------~~V~vle~~ 38 (363)
T 1c0p_A 8 RVVVLGSGVIGLSSALILARKG--------------YSVHILARD 38 (363)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CEEEEEecc
Confidence 7999999999999999998765 899999974
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=91.43 E-value=0.14 Score=44.26 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.|||+|..|...|..|.+.|++|++++++.
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999998863
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.15 Score=46.16 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|.-|...|..|.+.|++|+++|+++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE 35 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998743
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.39 E-value=0.16 Score=47.72 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+++|.|||.|.-|...|..|.+.|++|+++|+++
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~ 55 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV 55 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 34789999999999999999999999999999874
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.15 Score=49.32 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++.|||.|.-|+..|..|++.|++|+++|+++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~ 42 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR 42 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998754
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.13 Score=48.08 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|+|||+|.+|+-+|..|++.+ .+|+|+++.+
T Consensus 6 dvvIIG~G~~Gl~~A~~La~~G--------------~~V~vlE~~~ 37 (369)
T 3dme_A 6 DCIVIGAGVVGLAIARALAAGG--------------HEVLVAEAAE 37 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CeEEEEeCCC
Confidence 7999999999999999999866 8999999863
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.23 Score=48.37 Aligned_cols=73 Identities=19% Similarity=0.174 Sum_probs=50.1
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+++|+|||+|.+|...+..|.+.+ .+|+++... +.+++ .+...+.+|+++.+...
T Consensus 12 ~~~vlVvGgG~va~~k~~~L~~~g--------------a~V~vi~~~-----~~~~~----~~l~~~~~i~~~~~~~~-- 66 (457)
T 1pjq_A 12 DRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALT-----FIPQF----TVWANEGMLTLVEGPFD-- 66 (457)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESS-----CCHHH----HHHHTTTSCEEEESSCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCc--------------CEEEEEcCC-----CCHHH----HHHHhcCCEEEEECCCC--
Confidence 358999999999999999999876 899999863 22333 23333456777654211
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCC
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
++.--.+|+||.++|...
T Consensus 67 --------~~~l~~~~lVi~at~~~~ 84 (457)
T 1pjq_A 67 --------ETLLDSCWLAIAATDDDT 84 (457)
T ss_dssp --------GGGGTTCSEEEECCSCHH
T ss_pred --------ccccCCccEEEEcCCCHH
Confidence 111114899999999874
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.16 Score=48.04 Aligned_cols=42 Identities=19% Similarity=0.017 Sum_probs=32.2
Q ss_pred CCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 356 ~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+.|++...+|+|++|+.++. .-...|..||.+|+.|+.....
T Consensus 321 ~tle~k~~~~Lf~AGqi~G~----------~Gy~eAaa~Gl~AG~naa~~~~ 362 (443)
T 3g5s_A 321 ETLEFREAEGLYAAGVLAGV----------EGYLESAATGFLAGLNAARKAL 362 (443)
T ss_dssp TTSEETTEEEEEECGGGGTB----------CSHHHHHHHHHHHHHHHHHHHT
T ss_pred hhceecCCCCEEECcccccc----------HHHHHHHHhHHHHHHHHHHHhc
Confidence 56776678899999999885 3456788899999988876543
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=91.21 E-value=0.15 Score=46.60 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=29.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
++|+|||+|..|...|..|...|+ +++|+|.+.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE 49 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 689999999999999999998888 899999864
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.14 Score=49.97 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~ 95 (436)
++|.|||.|..|+..|..|++. |++|+++|+++
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 5899999999999999999998 89999999864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.12 Score=46.82 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|.-|...|..|++.|++|+++|+++.
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~ 35 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA 35 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998753
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.16 Score=46.75 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~ 95 (436)
.++|.|||.|.-|...|..|++.| ++|+++|+++
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~ 58 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF 58 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 368999999999999999999999 9999999864
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.18 Score=43.18 Aligned_cols=32 Identities=34% Similarity=0.376 Sum_probs=29.7
Q ss_pred cEEEEC-CchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 64 RVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIG-gG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+|+||| +|..|...|..|.+.|++|+++++++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 699999 99999999999999999999999863
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=91.04 E-value=0.26 Score=45.48 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.++|.|||+|..|.++|..|+..|+ +++|+|...
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~ 56 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVME 56 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence 4789999999999999999998887 899999853
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=91.03 E-value=0.26 Score=44.96 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=30.6
Q ss_pred CcEEEEC-CchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIG-gG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|.||| +|.-|.+.|..|++.|++|+++++++
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 5799999 99999999999999999999999764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.18 Score=46.91 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|.|||+|.-|...|..|.+.|++|+++++.+
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~ 47 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK 47 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3689999999999999999999999999999863
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.11 Score=48.68 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-------CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-------YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-------~~v~lie~~~~ 96 (436)
+++|.|||+|.-|.+.|..|++.| ++|+++++++.
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~ 49 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED 49 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence 358999999999999999999988 89999998754
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.25 Score=40.01 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=29.1
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
..+|+|+|+|.+|..+|..|...+ .+|+++++.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g--------------~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSG--------------HSVVVVDKN 51 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 358999999999999999998765 799999885
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.19 Score=46.31 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=29.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
.++|+|||+|.-|.+.|..|++.|++|+++ +.
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 478999999999999999999999999999 65
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.69 E-value=0.2 Score=46.63 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=29.5
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.++|+|||+ |..|.++|..+...|. +++|+|...
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~ 44 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA 44 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 478999998 9999999999988774 799999753
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.18 Score=51.54 Aligned_cols=43 Identities=12% Similarity=0.012 Sum_probs=32.0
Q ss_pred CCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 356 ~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
..++ |++|++||+|||+.... ...+..+..+|+.++.++..+.
T Consensus 446 ~~~~-t~v~gl~a~Ge~~~~~~-------hg~~~~sl~~g~~ag~~a~~~~ 488 (662)
T 3gyx_A 446 YNRM-TTVEGLWTCADGVGASG-------HKFSSGSHAEGRIVGKQMVRWY 488 (662)
T ss_dssp CTTB-CSSBTEECCSSSBCSCC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCC-CccCCeEeCcccccccc-------CccHhHHHHHHHHHHHHHHHHH
Confidence 5677 99999999999986311 3337778888888888776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 436 | ||||
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 1e-10 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 1e-08 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 4e-08 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-07 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 3e-07 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 6e-07 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 7e-06 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 5e-05 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 0.001 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 1e-04 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 2e-04 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 3e-04 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 4e-04 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 0.003 |
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (137), Expect = 1e-10
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 34/151 (22%)
Query: 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGEL 249
VK T R++ + + + E + ++GGG G E + L
Sbjct: 14 VKSRTTLFRKIGDFRSLEKIS--------------REVKSI---TIIGGGFLGSELACAL 56
Query: 250 SDFIMRDVRQRYSHVKDYIHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRL-----V 302
V + + + L ++ ++ + GV++ V
Sbjct: 57 GRKAR----------ALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV 106
Query: 303 RGIVKDVDSQKLILNDGTEVPYGLLVWSTGV 333
+ + + L DG +V +V + G+
Sbjct: 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 52.0 bits (123), Expect = 1e-08
Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 7/167 (4%)
Query: 234 VVVGGGPTGVEFSGELSDFIMR-DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292
VV+G G V F EL + + + + + + +++R
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66
Query: 293 QLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPG--- 349
+ V D + + L+DG +PYG LV +TG P ++ + L ++ G
Sbjct: 67 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC 126
Query: 350 -GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVSYEQ 394
I +D + R + DV+A+GD +G+ + Q
Sbjct: 127 DDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQ 172
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 50.5 bits (119), Expect = 4e-08
Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 8/161 (4%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293
V+VG GP G E + +LS V + + + +
Sbjct: 4 VIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYR 63
Query: 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIG 353
+RL +K+++ + EVPY LV +TG L + + G I
Sbjct: 64 KRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHT--GRGIL 121
Query: 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
ID+ R +DV+A+GDC+ ++ A+ + EQ
Sbjct: 122 IDDNFRTS-AKDVYAIGDCAE-----YSGIIAGTAKAAMEQ 156
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 47.4 bits (112), Expect = 2e-07
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 33/144 (22%)
Query: 191 KENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELS 250
KE LR + A I+ + +++GGG G+E +
Sbjct: 10 KEYLLTLRTIFDADRIKESI-----------------ENSGEAIIIGGGFIGLELA---- 48
Query: 251 DFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309
+ + HV LI + D+ L + L ++GV+ + +
Sbjct: 49 ----------GNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEA 98
Query: 310 DSQKLILNDGTEVPYGLLVWSTGV 333
+ + +L + + + + + G+
Sbjct: 99 NEEG-VLTNSGFIEGKVKICAIGI 121
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 46.6 bits (110), Expect = 3e-07
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFS 246
+ G LR + A+ I+ L +SRL ++VGGG G+E +
Sbjct: 4 LQGATMPVHTLRTLEDARRIQAGL--------------RPQSRL---LIVGGGVIGLELA 46
Query: 247 GELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG 304
+ +HV+L+E + + L + + GV L
Sbjct: 47 --------------ATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE 92
Query: 305 I-VKDVDSQKLILNDGTEVPYGLLVWSTG 332
V ++L+DGT + ++V G
Sbjct: 93 RSVTGSVDGVVLLDDGTRIAADMVVVGIG 121
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 47.5 bits (111), Expect = 6e-07
Identities = 37/171 (21%), Positives = 61/171 (35%), Gaps = 13/171 (7%)
Query: 234 VVVGGGPTGVEFSGELSDF-----IMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH 288
V+VG G GVE + L I A + +
Sbjct: 7 VIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTP 66
Query: 289 YATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348
A + + + + D Q++IL+DG + Y LV +TG P + +L +
Sbjct: 67 DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLI--PNCELASAA 124
Query: 349 G----GRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKTVLPALAQVSYEQ 394
G I I+E ++ S + AVGDC + + + V + EQ
Sbjct: 125 GLQVDNGIVINEHMQ-TSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQ 174
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 42.9 bits (100), Expect = 7e-06
Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
+ VGGG +EF+G + + R + ++ D I ++LR
Sbjct: 20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQ--LTEQLRANGI 77
Query: 292 TQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTG 332
+ + K+ D + ++ G E Y +++ + G
Sbjct: 78 NVRTHEN---PAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 41.7 bits (96), Expect = 5e-05
Identities = 29/183 (15%), Positives = 48/183 (26%), Gaps = 40/183 (21%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-------------ILS 280
VVVGGG G + + + ++ VTLIE N
Sbjct: 6 VVVGGGTGGATAAKYI--------KLADPSIE----VTLIEPNTDYYTCYLSNEVIGGDR 53
Query: 281 SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS---- 336
+ Y + V D D + + G E Y V + G+
Sbjct: 54 KLESIKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKI 113
Query: 337 -----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVS 391
+ + L G + + + +GD S +P +
Sbjct: 114 EQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANP------MPKSGYSA 167
Query: 392 YEQ 394
Q
Sbjct: 168 NSQ 170
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 37.9 bits (86), Expect = 0.001
Identities = 26/128 (20%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 63 PRVVVLGSGWAGCRLMKGIDTSLYD--VVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPI 120
+VVV+G G G K I + V + P L G +
Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLE-----S 57
Query: 121 ARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180
+ R G GID D +V + YD+ V+A G
Sbjct: 58 IKHGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAE-----------FGYDRCVVAPGI 106
Query: 181 EASTFGIH 188
E I
Sbjct: 107 ELIYDKIE 114
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 37/192 (19%), Positives = 58/192 (30%), Gaps = 44/192 (22%)
Query: 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------- 280
+V+G G E EL + + E + +S
Sbjct: 4 IVLGSSHGGYEAVEEL--------LNLHPDA----EIQWYEKGDFISFLSAGMQLYLEGK 51
Query: 281 -SFDDRLRHYATTQLSKSGVRL--------VRGIVKDVDSQKLILNDGTEVPYGLLVWST 331
+ +R+ ++ GV + ++ V + L+ + Y L+ S
Sbjct: 52 VKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISP 111
Query: 332 GVGPST--------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC-SGYLESTGKT 382
G P L P G I DE+ S DVFAVGD
Sbjct: 112 GAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTE 170
Query: 383 VLPALAQVSYEQ 394
V ALA + +Q
Sbjct: 171 VNIALATNARKQ 182
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 38.7 bits (89), Expect = 2e-04
Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEF 245
G G N +LR + A+ IRR+L +RL VV+GGG G+E
Sbjct: 8 GAVGKANNFRYLRTLEDAECIRRQL--------------IADNRL---VVIGGGYIGLEV 50
Query: 246 SGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI 305
+ M + + + ++ R + + V
Sbjct: 51 AATAIKANMHVTLLDTAARVLERVTA----PPVSAFYEHLHREAGVDIRTGTQVCGFEMS 106
Query: 306 VKDVDSQKLILNDGTEVPYGLLVWSTG 332
++ DGT +P L++ G
Sbjct: 107 TDQQKVTAVLCEDGTRLPADLVIAGIG 133
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 38.2 bits (88), Expect = 3e-04
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 19/107 (17%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT 291
VVG G GVE G + + + + L SFD +
Sbjct: 23 RVAVVGAGYIGVELGGVI-NGLGAKTHLFEMF------------DAPLPSFDPMISETLV 69
Query: 292 TQLSKSGVRL-----VRGIVKDVDSQ-KLILNDGTEVPYGLLVWSTG 332
++ G +L + +VK+ D L L DG L+W+ G
Sbjct: 70 EVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 33/209 (15%), Positives = 64/209 (30%), Gaps = 58/209 (27%)
Query: 234 VVVGGGPTGVEFSGELSD----------------------------------FIMRDVRQ 259
+VVG GP G + + + +
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDSQKLIL 316
+ + + + E +S +L L + V +V+G V + +
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 317 NDGTEVPYGLLVWSTGVGPSTLV-----------KSLDLPKSPGGRIGIDEWLRVPSVQD 365
+ + + +TG P LV + + + + G I +D+ R SV +
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRT-SVPN 185
Query: 366 VFAVGDCSGYLESTGKTVLPALAQVSYEQ 394
+FA+GD PALA + +
Sbjct: 186 IFAIGDIVPG---------PALAHKASYE 205
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 35.3 bits (80), Expect = 0.003
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 11/105 (10%)
Query: 232 HCVVVGGGPTGVEFSGELSDFIMRDV----RQRYSHVKDYIHVTLIEANEILSSFDDRLR 287
VVVGG T VE+ + R V + +KD + +
Sbjct: 24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISG 83
Query: 288 HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 332
T++ + V+ +V N + + G
Sbjct: 84 S-NVTRIEEDANGRVQAVVAMTP------NGEMRIETDFVFLGLG 121
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 436 | |||
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.86 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.86 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.86 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.86 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.83 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.82 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.81 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.8 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.78 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.78 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.76 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.75 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.75 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.74 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.74 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.73 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.72 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.7 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.7 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.69 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.69 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.69 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.68 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.67 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.67 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.67 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.66 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.65 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.63 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.63 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.62 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.6 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.6 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.59 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.55 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.54 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.51 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.5 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.5 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.49 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.49 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.47 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.44 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.43 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.42 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.38 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.33 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.32 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.26 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.26 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.25 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.23 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.2 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.2 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.19 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.17 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.16 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.16 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.16 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.15 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.15 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.12 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.12 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.12 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.1 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.09 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.05 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.04 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.03 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.03 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.03 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.0 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.0 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.98 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.97 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.95 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.95 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.95 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.94 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.94 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.93 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.93 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.91 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 98.9 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.87 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.87 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.86 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.85 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.85 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.85 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.84 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.84 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.82 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.8 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.79 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.79 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.79 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.77 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.77 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.76 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.68 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.65 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.64 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.62 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.61 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.61 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.6 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.59 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.57 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.57 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.56 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.55 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.53 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.52 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.52 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.49 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.46 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.44 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.43 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.42 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.41 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.4 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.4 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.39 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.33 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.31 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.25 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.23 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.23 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.12 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 98.07 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.07 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 98.06 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.05 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.0 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.0 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.98 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 97.96 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.96 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.96 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.92 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.91 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 97.9 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.89 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.88 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.88 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 97.86 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.82 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.81 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.8 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.73 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.72 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.65 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.63 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.57 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.55 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.54 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.46 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 97.46 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 97.42 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.39 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.39 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.34 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.34 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.29 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.24 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.21 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.18 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.07 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.01 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 96.93 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.92 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.78 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.73 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.68 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.67 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.6 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.56 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.4 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.29 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.26 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.17 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.09 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.02 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.85 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.83 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 95.78 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.77 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.76 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 95.73 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.73 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.66 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 95.46 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.39 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.32 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.22 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.2 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 95.15 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.05 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.93 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.88 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.78 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.6 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.55 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.54 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.47 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 94.42 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 94.34 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.31 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.24 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 94.19 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.06 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 94.03 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.0 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 93.87 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.86 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 93.79 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.73 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 93.72 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 93.72 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.69 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 93.57 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 93.42 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.37 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.34 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 93.29 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.22 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.16 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 92.98 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.88 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.79 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.58 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 92.57 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.56 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 92.5 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 92.45 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 92.42 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.37 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 92.36 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 92.27 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 92.15 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 92.14 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 92.12 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.0 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 91.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 91.97 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.97 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 91.82 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.73 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.65 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.47 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.43 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 90.97 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 90.92 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 90.83 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.65 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 90.62 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 90.58 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.54 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 90.38 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 90.31 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 90.25 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 90.17 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 89.95 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 89.92 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.85 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 89.77 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 89.77 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 89.64 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.6 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.6 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.44 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 89.39 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 88.85 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 88.48 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 88.46 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 87.91 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 87.84 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 87.6 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 87.6 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.56 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 87.5 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 87.14 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 86.79 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 86.79 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 86.41 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.35 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 86.32 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 86.23 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.03 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 85.78 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 85.55 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.32 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.3 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 85.11 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 84.89 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 84.89 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 84.24 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 83.95 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 83.88 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 83.6 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 83.34 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.03 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 82.97 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 82.87 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 82.66 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 82.39 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 82.37 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 82.28 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 82.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 82.11 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 82.1 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 81.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 81.86 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 81.47 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 81.23 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 81.1 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 80.94 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 80.75 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.56 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 80.06 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.05 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 80.02 |
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.86 E-value=2.1e-21 Score=168.36 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=124.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHH--------------HHHHHHHhc
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRH--------------YATTQLSKS 297 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~--------------~~~~~l~~~ 297 (436)
||+|||||++|+|+|..|.+++ ++.+|+++++.+..+..+..+.. ...+.+++.
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~------------~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 69 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLH------------PDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESR 69 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHC------------TTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHT
T ss_pred EEEEECCcHHHHHHHHHHHhcC------------CCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHC
Confidence 7999999999999999998764 44799999986543322222221 234568889
Q ss_pred CCEEEecc-eEEEeC--CeEEE---cCCc--EEecceEEEecCCCCch---------hcccCCCCCCCCCcEEeCCCCCC
Q 013810 298 GVRLVRGI-VKDVDS--QKLIL---NDGT--EVPYGLLVWSTGVGPST---------LVKSLDLPKSPGGRIGIDEWLRV 360 (436)
Q Consensus 298 gV~i~~~~-v~~i~~--~~v~~---~~g~--~i~~D~vi~a~G~~p~~---------~~~~~~l~~~~~G~i~vd~~~~~ 360 (436)
||+++.+. |++++. +.|.+ .+|+ ++++|.+++++|..|+. +++ .+++++++|+|.||+++|
T Consensus 70 gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~-~~~~~~~~G~i~vd~~~~- 147 (198)
T d1nhpa1 70 GVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLK-GTLELHPNGLIKTDEYMR- 147 (198)
T ss_dssp TCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGT-TTSCBCTTSCBCCCTTCB-
T ss_pred CcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeeccccccccccccc-ccceeccCCceecCCccc-
Confidence 99999995 999975 45554 3443 58999999999976541 222 357778899999999999
Q ss_pred CCCCCEEEecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhhhcCC
Q 013810 361 PSVQDVFAVGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFLLARN 408 (436)
Q Consensus 361 t~~~~Vya~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 408 (436)
|+.|+|||+|||+..+. ..+......++..|.+||+.||+||.....+
T Consensus 148 T~~~~IyA~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~~ 196 (198)
T d1nhpa1 148 TSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKP 196 (198)
T ss_dssp CSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCC
T ss_pred ccccceEEecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCCC
Confidence 89999999999998765 3455555678999999999999999766544
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.86 E-value=8e-22 Score=168.79 Aligned_cols=158 Identities=23% Similarity=0.275 Sum_probs=116.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHH----------HHHHhcCCEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYAT----------TQLSKSGVRL 301 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~----------~~l~~~gV~i 301 (436)
+|+|||||++|+|+|..|.+.+ ....++++.+....+...+.+...+. +.....+|++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g------------~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 72 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAG------------YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEW 72 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT------------CCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEE
T ss_pred CEEEECccHHHHHHHHHHHhcC------------CceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEE
Confidence 7999999999999999998876 12344444443322211122211111 1234568999
Q ss_pred Eecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCch------hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccc
Q 013810 302 VRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPST------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (436)
Q Consensus 302 ~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~~------~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~ 372 (436)
+.+. +++++. ..+.+++|+++++|.+++|+|..|+. +....++.. ++.|.||+++| |+.|+|||+|||
T Consensus 73 ~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~-ts~~~IyA~GD~ 149 (183)
T d1d7ya1 73 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGR-TTCPDVYALGDV 149 (183)
T ss_dssp EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCB-CSSTTEEECGGG
T ss_pred EEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEecccee-ccccccchhhhh
Confidence 9984 888865 47889999999999999999999863 334445544 35699999999 899999999999
Q ss_pred cccccC-CCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 373 SGYLES-TGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 373 ~~~~~~-~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+..++. .|......++..|.+||+.||+||+.
T Consensus 150 a~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 150 TRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp EEEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred hccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 988764 45444456899999999999999963
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=2.3e-21 Score=163.27 Aligned_cols=150 Identities=29% Similarity=0.473 Sum_probs=119.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHH-------------HHHHHHhcC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHY-------------ATTQLSKSG 298 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~-------------~~~~l~~~g 298 (436)
||+|||+|++|+|+|..|++ ..+|+++++.+.....++.+.+. ..+.+++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~---------------~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ---------------TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRG 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT---------------TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHT
T ss_pred eEEEECCcHHHHHHHHHHHc---------------CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhcc
Confidence 79999999999999998864 27999999864332222222222 234567789
Q ss_pred CEEEecc-eEEEeC-CeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccc
Q 013810 299 VRLVRGI-VKDVDS-QKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376 (436)
Q Consensus 299 V~i~~~~-v~~i~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~ 376 (436)
++++.+. ++.++. ..+.+.+++++++|.+++|+|..|+++.+..+++.+. .|.||+++| |+.|+|||+|||+..+
T Consensus 67 v~~~~~~~v~~i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~--~i~v~~~~~-t~~~~i~aiGD~~~~~ 143 (167)
T d1xhca1 67 IEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGR--GILIDDNFR-TSAKDVYAIGDCAEYS 143 (167)
T ss_dssp EEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSS--SEECCTTSB-CSSTTEEECGGGEEBT
T ss_pred ceeeeeccccccccccccccccccccccceeEEEEEecCCchhhhcCceeCC--ceeeccccE-ecCCCeEEeeecccCC
Confidence 9999885 888875 4577788889999999999999888888888888753 399999999 8999999999999763
Q ss_pred cCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 377 ESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 377 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
. ..+..+..|++||+.+|+||..
T Consensus 144 ~-----~~~~~~~~a~~~a~~~a~~i~G 166 (167)
T d1xhca1 144 G-----IIAGTAKAAMEQARVLADILKG 166 (167)
T ss_dssp T-----BCCCSHHHHHHHHHHHHHHHTT
T ss_pred C-----eEEChHHHHHHHHHHHHHHcCC
Confidence 2 2356889999999999999864
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.7e-22 Score=174.22 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=127.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHH-------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRL------------------------- 286 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~------------------------- 286 (436)
+++|||+|++|+++|..|.+.+ ...+|+++.+.+..+...+.+
T Consensus 6 ~~vIvG~G~aG~~~A~~Lr~~~------------~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~ 73 (213)
T d1m6ia1 6 PFLLIGGGTAAFAAARSIRARD------------PGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKE 73 (213)
T ss_dssp EEEEESCSHHHHHHHHHHHHHS------------TTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCE
T ss_pred CEEEECCcHHHHHHHHHHHhcC------------CCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccch
Confidence 6899999999999999998754 347899998754332110000
Q ss_pred ------------HHHHHHHHHhcCCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCc--hhcccCCCCCC-C
Q 013810 287 ------------RHYATTQLSKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS--TLVKSLDLPKS-P 348 (436)
Q Consensus 287 ------------~~~~~~~l~~~gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~-~ 348 (436)
.......+++.||+++.++ |++|+. ..|.++||++++||.+|+|+|..|+ .+....+++++ .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~ 153 (213)
T d1m6ia1 74 RSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSD 153 (213)
T ss_dssp EESBSSCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTT
T ss_pred hhhhcCChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhh
Confidence 0111223567799999995 999964 5799999999999999999998766 46667788774 4
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcCCc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLARNW 409 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 409 (436)
.|.|.||+++| ++ |+|||+|||+..++.......+.++..|+.||+.||+||.....++
T Consensus 154 ~~~i~vd~~l~-~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~~y 212 (213)
T d1m6ia1 154 FGGFRVNAELQ-AR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKPY 212 (213)
T ss_dssp TCSEECCTTCE-EE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCCC
T ss_pred hhhhhhhHhcC-cC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCCCC
Confidence 57899999999 66 9999999999988754434467899999999999999999876554
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.83 E-value=3.2e-20 Score=146.34 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=106.4
Q ss_pred CCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcC
Q 013810 184 TFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (436)
Q Consensus 184 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~ 263 (436)
.|++||.+..++++++++++.++++.+ ...++++|||||++|+|+|..|++.+
T Consensus 1 iP~ipG~~~~v~~lrtl~Da~~l~~~~-----------------~~~~~vvIIGgG~iG~E~A~~l~~~g---------- 53 (121)
T d1d7ya2 1 LPTLQGATMPVHTLRTLEDARRIQAGL-----------------RPQSRLLIVGGGVIGLELAATARTAG---------- 53 (121)
T ss_dssp CGGGTTCSSCEEECCSHHHHHHHHHHC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT----------
T ss_pred CccCCCCCCCEEEeCCHHHHHHHHHhh-----------------hcCCeEEEECcchhHHHHHHHhhccc----------
Confidence 378999987789999999999998875 34469999999999999999999876
Q ss_pred CCCccEEEEEeCC-CCCC-cccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecC
Q 013810 264 VKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 264 ~~~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G 332 (436)
.+|+++++. .+++ .+++++.+.+.+.++++||+++.+. |++++.+.+.++||++++||+||+|+|
T Consensus 54 ----~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 54 ----VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp ----CEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTSCEEECSEEEECSC
T ss_pred ----ceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCCCEEECCEEEEeeC
Confidence 999999995 5665 6799999999999999999999995 999999999999999999999999998
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.82 E-value=3e-20 Score=164.56 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCEEEecceEEEeCCeEE--EcC--CcEEecceEEEecCCCCch----------hcccCCCCCCCCCcEE
Q 013810 288 HYATTQLSKSGVRLVRGIVKDVDSQKLI--LND--GTEVPYGLLVWSTGVGPST----------LVKSLDLPKSPGGRIG 353 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~v~~i~~~~v~--~~~--g~~i~~D~vi~a~G~~p~~----------~~~~~~l~~~~~G~i~ 353 (436)
..+...++..||+++.+........... ..+ ..++.++.+++++|.+|.. ++.+.|+++|++|+|.
T Consensus 103 ~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~~~G~i~ 182 (229)
T d3lada1 103 GGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIY 182 (229)
T ss_dssp HHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBCTTSCBC
T ss_pred hhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeecCCCcEE
Confidence 3445566778999988753333333222 222 2458899999999987741 4567789999999999
Q ss_pred eCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 354 IDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 354 vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
||+++| |+.|+|||+|||... +.+.+.|..+|+.||++|+....
T Consensus 183 vd~~~~-T~vpgiyA~GDv~~g---------~~l~~~A~~~G~~aa~~i~g~~~ 226 (229)
T d3lada1 183 VDDYCA-TSVPGVYAIGDVVRG---------AMLAHKASEEGVVVAERIAGHKA 226 (229)
T ss_dssp CCTTSB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHHHCCC
T ss_pred eccccc-CCCCCEEEEeCCcch---------HHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999 999999999999986 77899999999999999986543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.81 E-value=1.5e-19 Score=142.99 Aligned_cols=120 Identities=22% Similarity=0.399 Sum_probs=105.8
Q ss_pred CCCCCCCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhh
Q 013810 181 EASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (436)
Q Consensus 181 ~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~ 260 (436)
+|+.|+|||. +++++++++.++.++.+.+ +..++++|||||++|+|+|..|++.+
T Consensus 1 R~r~p~ipG~-e~~~t~~~~~d~~~l~~~~-----------------~~~~~vvIiGgG~iG~E~A~~l~~~g------- 55 (122)
T d1xhca2 1 RAREPQIKGK-EYLLTLRTIFDADRIKESI-----------------ENSGEAIIIGGGFIGLELAGNLAEAG------- 55 (122)
T ss_dssp EECCCCSBTG-GGEECCCSHHHHHHHHHHH-----------------HHHSEEEEEECSHHHHHHHHHHHHTT-------
T ss_pred CCCCcCCCCc-cceEccCCHHHHHHHHHHh-----------------hcCCcEEEECCcHHHHHHHHHhhccc-------
Confidence 4688999997 6789999999999998876 33459999999999999999999877
Q ss_pred hcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCC
Q 013810 261 YSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 261 ~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.+|+++++.+.+..+++++.+.+.+.|+++||+++++. +.+++.+++ +.+++++++|+||+|+|.
T Consensus 56 -------~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 56 -------YHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEGV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp -------CEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSSEE-EETTEEEECSCEEEECCE
T ss_pred -------ceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEE-EeCCCEEECCEEEEEEEe
Confidence 99999999765556999999999999999999999995 999988876 557788999999999995
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=1.5e-19 Score=154.62 Aligned_cols=157 Identities=24% Similarity=0.292 Sum_probs=114.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEE--eCCCCCCcc--------------cHHHHHHHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLI--EANEILSSF--------------DDRLRHYATTQL 294 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv--~~~~~l~~~--------------~~~~~~~~~~~l 294 (436)
++|+|||||++|+|+|..|++++ .+++++ .+.+..+.. ............
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g--------------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASG--------------WEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAY 69 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHcC--------------CceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 48999999999999999999876 555554 443222111 011111122344
Q ss_pred HhcCCEEEecc-eEEEeC--CeEEEcCCcEEecceEEEecCCCCc----hhcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 295 SKSGVRLVRGI-VKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS----TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~----~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
...++.+..+. +..++. ..+...++.++++|.+++++|.+|+ .+.+..++.. +|.+.||+++| |+.|+||
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~-ts~~~vy 146 (185)
T d1q1ra1 70 AAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQ-TSDPLIM 146 (185)
T ss_dssp HHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSB-CSSTTEE
T ss_pred cccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccc-cchhhhh
Confidence 55566666663 555554 4688889999999999999998875 3556666654 46799999999 8999999
Q ss_pred Eecccccccc-CCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 368 AVGDCSGYLE-STGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 368 a~GD~~~~~~-~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
|+|||+..+. .++.+..+.+++.|++||+.||+||..
T Consensus 147 a~GD~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G 184 (185)
T d1q1ra1 147 AVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCG 184 (185)
T ss_dssp ECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred cchhhhccccccCCcccchhhHHHHHHHHHHHHHHccC
Confidence 9999999876 355555567899999999999999964
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.78 E-value=7.9e-19 Score=158.66 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=108.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.++|||+|+.|+++|..+++++ .+|+++++.+.+..
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G--------------~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~ 109 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMG--------------GRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQY 109 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhc
Confidence 5999999999999999999987 89999998543210
Q ss_pred ---------cc-HHHHHH------------HHHHHHhcCCEEEec-ceEEEeCCeEEEcCCcEEecceEEEecCCCCch-
Q 013810 282 ---------FD-DRLRHY------------ATTQLSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPST- 337 (436)
Q Consensus 282 ---------~~-~~~~~~------------~~~~l~~~gV~i~~~-~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~- 337 (436)
.. ....+. ..+.+...++..... ...-++...+. .+|++++||.|++|+|.+|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~-~~g~~i~ad~viiAtG~~P~~~ 188 (261)
T d1mo9a1 110 WFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVE-AAGKVFKAKNLILAVGAGPGTL 188 (261)
T ss_dssp TCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEE-ETTEEEEBSCEEECCCEECCCC
T ss_pred cccccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeecccc-cccceEeeeeeeeccCCCCCcC
Confidence 00 000000 001112222322222 22222333333 467889999999999999972
Q ss_pred ----------hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 338 ----------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 338 ----------~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.+.+|++++++|+|.||+++| |+.|+|||+|||++. |.+++.|+.||+.||+||+...
T Consensus 189 ~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~-Ts~~~IyA~GDv~~~---------~~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 189 DVPEQPRSAELAKILGLDLGPKGEVLVNEYLQ-TSVPNVYAVGDLIGG---------PMEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp CSTCEECCHHHHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECGGGGCS---------SCSHHHHHHHHHHHHHHHTTCC
T ss_pred cccccccccccccceeeeeccCCEEEeCCCcc-cCCCCEEEEEEeCCC---------cccHHHHHHHHHHHHHHHCCCC
Confidence 2234689999999999999999 999999999999986 7899999999999999998653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.78 E-value=2.1e-18 Score=151.75 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=115.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|+.|+++|..+++++ .+|+++++...+..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G--------------~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 70 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLG--------------FKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANH 70 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhc
Confidence 6999999999999999999987 89999998543210
Q ss_pred --------cc------------HHHHHHHHHHHHhcCCEEEecceEEEeCCeEEE----cCCcEEecceEEEecCC----
Q 013810 282 --------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL----NDGTEVPYGLLVWSTGV---- 333 (436)
Q Consensus 282 --------~~------------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~----~~g~~i~~D~vi~a~G~---- 333 (436)
.. ..+.+.+...+...+|+++.....-........ .+..++.+|.||+|+|.
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~g 150 (221)
T d1dxla1 71 GVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKG 150 (221)
T ss_dssp TEEESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred CeecccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCccC
Confidence 00 011223344566778888877544444443332 23457899999999994
Q ss_pred -CCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 334 -GPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 334 -~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.|+ + .++.+|+++|++|+|.||+++| |++|+|||+|||+.. |.+++.|+.+|+.||++|+...
T Consensus 151 r~p~~~~l~l~~~gv~~~~~G~i~vd~~~~-T~v~gi~A~GDv~~g---------~~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 151 RTPFTSGLNLDKIGVETDKLGRILVNERFS-TNVSGVYAIGDVIPG---------PMLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp EEECCTTSCCTTTTCCBCSSSCBCCCTTCB-CSSTTEEECSTTSSS---------CCCHHHHHHHHHHHHHHHTTSC
T ss_pred ccccCCCCChHhcCceEcCCCcEEeCCCcc-cCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHcCCC
Confidence 555 2 2578899999999999999999 999999999999987 7899999999999999997543
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.76 E-value=3.1e-18 Score=150.79 Aligned_cols=151 Identities=23% Similarity=0.306 Sum_probs=113.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.|+|||+|+.|+++|..+++.+ .+|+++++..+..
T Consensus 5 DviVIG~GpaGl~aA~~aar~G--------------~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (223)
T d1ebda1 5 ETLVVGAGPGGYVAAIRAAQLG--------------QKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGI 70 (223)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcc
Confidence 6999999999999999999877 8999998754210
Q ss_pred -----cccH------------HHHHHHHHHHHhcCCEEEecceEEEeCCe--EEEc-CCcEEecceEEEec--------C
Q 013810 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQK--LILN-DGTEVPYGLLVWST--------G 332 (436)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~i~~~~v~~i~~~~--v~~~-~g~~i~~D~vi~a~--------G 332 (436)
.+.. .+...+...+...+|+++.++-.-..... +... ++.++.+|.+++++ |
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G 150 (223)
T d1ebda1 71 KAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELVG 150 (223)
T ss_dssp ECCSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBSC
T ss_pred cchhheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCcccccc
Confidence 0000 11222334566779999877422222222 2222 34568899999985 7
Q ss_pred CCCc-h-h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 333 VGPS-T-L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 333 ~~p~-~-~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++|+ + + ++.+|+++|++|+|.||+++| |+.|+|||+|||+.. +.+++.|+.||+.||++|+...
T Consensus 151 ~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~-T~~~gvyA~GDv~~~---------~~~~~~A~~~g~~aa~~i~g~~ 217 (223)
T d1ebda1 151 RRPNTDELGLEQIGIKMTNRGLIEVDQQCR-TSVPNIFAIGDIVPG---------PALAHKASYEGKVAAEAIAGHP 217 (223)
T ss_dssp EEESCSSSSTTTTTCCBCTTSCBCCCTTCB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHHHHTSCC
T ss_pred ceecCCCCChHhcCceECCCCCEeECCCCC-CCCCCEEEEeccCCC---------cccHHHHHHHHHHHHHHHcCCC
Confidence 7777 3 2 678899999999999999999 999999999999986 7789999999999999998654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=6.3e-18 Score=149.93 Aligned_cols=154 Identities=25% Similarity=0.361 Sum_probs=113.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------------------------c---
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------------------S--- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~---------------------------~--- 281 (436)
+|+|||+|+.|+.+|...++++ ..+.+|+++++..+.. .
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~-----------~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~ 71 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSH-----------PETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF 71 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-----------TTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCC
Confidence 7999999999999999888765 3447899988753210 0
Q ss_pred --------cc-H-----------HHHHHHHHHHHhcCCEEEecceEEEeC------Ce--EEEcCCc--EEecceEEEec
Q 013810 282 --------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDS------QK--LILNDGT--EVPYGLLVWST 331 (436)
Q Consensus 282 --------~~-~-----------~~~~~~~~~l~~~gV~i~~~~v~~i~~------~~--v~~~~g~--~i~~D~vi~a~ 331 (436)
++ + .....+.+.++..||+++.+.-.-+.. .. +...+|+ ++++|.+|+++
T Consensus 72 ~i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAt 151 (233)
T d1xdia1 72 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT 151 (233)
T ss_dssp C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred cccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeec
Confidence 00 0 111224456778899998874222211 22 3345664 69999999999
Q ss_pred CCCCchh------------cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHH
Q 013810 332 GVGPSTL------------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQ 399 (436)
Q Consensus 332 G~~p~~~------------~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa 399 (436)
|..|... ++..+++++++|+|.||+++| |+.|+|||+|||++. +.+++.|..+|+.||
T Consensus 152 G~~p~~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~-T~~~gIyA~GDv~~~---------~~l~~~A~~~g~~aa 221 (233)
T d1xdia1 152 GASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSR-TLATGIYAAGDCTGL---------LPLASVAAMQGRIAM 221 (233)
T ss_dssp CEEECCCGGCEEECCSSSCTTTTTCCCBTTTBCCCCSSSB-CSSTTEEECSGGGTS---------CSCHHHHHHHHHHHH
T ss_pred CcccccccccccccccccccchhhhcccCCCcCCcCCCcc-cCCCCEEEEEEeCCC---------chhHHHHHHHHHHHH
Confidence 9987521 344567789999999999999 999999999999986 778999999999999
Q ss_pred hhhhhhc
Q 013810 400 KPSFLLA 406 (436)
Q Consensus 400 ~~i~~~~ 406 (436)
.||+...
T Consensus 222 ~~~~g~~ 228 (233)
T d1xdia1 222 YHALGEG 228 (233)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 9998653
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.75 E-value=3.2e-18 Score=152.69 Aligned_cols=76 Identities=20% Similarity=0.373 Sum_probs=67.6
Q ss_pred cEEecceEEEecCCCCchh-----------cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccH
Q 013810 320 TEVPYGLLVWSTGVGPSTL-----------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALA 388 (436)
Q Consensus 320 ~~i~~D~vi~a~G~~p~~~-----------~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~ 388 (436)
+++++|.+++++|.+|... ++.++++++++|+|.||+++| |+.|+|||+|||++. +.+.
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~-Ts~~~iyA~GDv~~~---------~~~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSK-TNVDNIYAIGDVTDR---------VMLT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCB-CSSTTEEECGGGGCS---------CCCH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccC-cCCCCEEEEEECCCC---------ccch
Confidence 4689999999999888621 456788999999999999999 999999999999986 7889
Q ss_pred HHHHHHHHHHHhhhhhh
Q 013810 389 QVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 389 ~~A~~~g~~aa~~i~~~ 405 (436)
+.|+.||+.||++|+..
T Consensus 218 ~~A~~eg~~aa~~~~~~ 234 (240)
T d1feca1 218 PVAINEGAAFVDTVFAN 234 (240)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHhCC
Confidence 99999999999999864
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=8.9e-18 Score=148.86 Aligned_cols=72 Identities=19% Similarity=0.096 Sum_probs=62.6
Q ss_pred cceEEEecCCCCc-h--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHh
Q 013810 324 YGLLVWSTGVGPS-T--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQK 400 (436)
Q Consensus 324 ~D~vi~a~G~~p~-~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 400 (436)
.+..+.++|++|+ + .++.+|+++|++|+|.||++++ |+.|+|||+|||... +.+++.|..+|+.||+
T Consensus 154 ~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~-T~~~~v~A~GD~~~g---------~~l~~~a~~~G~~aa~ 223 (233)
T d1v59a1 154 GSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFN-SKFPHIKVVGDVTFG---------PMLAHKAEEEGIAAVE 223 (233)
T ss_dssp CEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSB-CSSTTEEECGGGSSS---------CCCHHHHHHHHHHHHH
T ss_pred ccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEe-cCCCCEEEEcCCccc---------HHHHHHHHHHHHHHHH
Confidence 3445558899998 3 3678899999999999999999 999999999999987 7889999999999999
Q ss_pred hhhhh
Q 013810 401 PSFLL 405 (436)
Q Consensus 401 ~i~~~ 405 (436)
+|...
T Consensus 224 ~i~~~ 228 (233)
T d1v59a1 224 MLKTG 228 (233)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 99754
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2e-17 Score=145.47 Aligned_cols=152 Identities=23% Similarity=0.362 Sum_probs=113.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.++|||+|+.|+++|..+++++ .+|.+++++.+..
T Consensus 5 DviIIG~GpaG~~aA~~aar~G--------------~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~ 70 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELG--------------ARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGF 70 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccc
Confidence 5999999999999999999887 8999998753210
Q ss_pred -----cccH------------HHHHHHHHHHHhcCCEEEecceEEEeCCeE-EEcCCcEEecceEEEecCCCCc-h----
Q 013810 281 -----SFDD------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKL-ILNDGTEVPYGLLVWSTGVGPS-T---- 337 (436)
Q Consensus 281 -----~~~~------------~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v-~~~~g~~i~~D~vi~a~G~~p~-~---- 337 (436)
.++. .+.....+.++..||+++.+.-.....+.+ ...+..++.+|.+++++|..|. +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~~r~ 150 (221)
T d3grsa1 71 PSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERV 150 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTEE
T ss_pred cccccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCCccc
Confidence 0000 111223345777899998774222222222 2234457889999999996554 1
Q ss_pred ------hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 338 ------LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 338 ------~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
-++..|++++++|+|.||+++| |+.|+|||+|||++. +.+.+.|+.+|+.||++|+....
T Consensus 151 p~~~~l~L~~~gv~~~~~G~I~vd~~~~-T~~~gvyA~GDv~~~---------~~l~~~A~~~G~~aa~~~~~~~~ 216 (221)
T d3grsa1 151 PNTKDLSLNKLGIQTDDKGHIIVDEFQN-TNVKGIYAVGDVCGK---------ALLTPVAIAAGRKLAHRLFEYKE 216 (221)
T ss_dssp ESCTTTTGGGTTCCBCTTSCBCCCTTCB-CSSTTEEECGGGGTS---------SCCHHHHHHHHHHHHHHHHSCCT
T ss_pred cCCCCcCchhcCcEECCCccEEeCCCcc-ccCCcEEEEEEccCC---------cCcHHHHHHHHHHHHHHHcCCCC
Confidence 1567788999999999999999 999999999999986 67899999999999999987654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.73 E-value=2.6e-17 Score=140.07 Aligned_cols=159 Identities=20% Similarity=0.256 Sum_probs=113.1
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC-CCcc-cHHHH---------HHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-LSSF-DDRLR---------HYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~-l~~~-~~~~~---------~~~~~~l~~~g 298 (436)
+|||+|||||++|+|+|..|.+.+ +..+|+++++.+. .... .+... ......+...+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~------------~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLAD------------PSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHG 69 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHC------------TTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTT
T ss_pred CCcEEEECccHHHHHHHHHHHHcC------------CCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccc
Confidence 469999999999999999998764 3479999998642 2211 11111 11122345567
Q ss_pred CEEEecceEEEeC--CeEEEcCCcEEecceEEEecCCCCc-hhccc--------CCCCCCCCCcEEeC-CCCCCCCCCCE
Q 013810 299 VRLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS-TLVKS--------LDLPKSPGGRIGID-EWLRVPSVQDV 366 (436)
Q Consensus 299 V~i~~~~v~~i~~--~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~--------~~l~~~~~G~i~vd-~~~~~t~~~~V 366 (436)
+.+..+++..++. ..+.+.+++++++|.+|+|+|.+|+ .++.. .++..+. +++.++ ..++.++.++|
T Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 148 (186)
T d1fcda1 70 IQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDA-GWCPVDIKTFESSIHKGI 148 (186)
T ss_dssp EEEECCCEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTT-SSEEBCSSSCBBSSSTTE
T ss_pred eeEeeeeeEeeeeccceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCccccc-ccccceeeeeecccccCc
Confidence 8888776655543 4577889999999999999999887 33222 2444443 455555 44777899999
Q ss_pred EEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 367 FAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 367 ya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
|++||++.... .|+.+..|..||+.+|+||.....
T Consensus 149 ~~iGd~~~~~~------~p~~~~~A~~q~~~~A~ni~~~~~ 183 (186)
T d1fcda1 149 HVIGDASIANP------MPKSGYSANSQGKVAAAAVVVLLK 183 (186)
T ss_dssp EECTTSEECTT------CCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeccccccCC------CCchHhHHHHHHHHHHHHHHHHhc
Confidence 99999997532 378899999999999999986543
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.72 E-value=6.2e-17 Score=127.83 Aligned_cols=116 Identities=20% Similarity=0.319 Sum_probs=99.6
Q ss_pred CCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCC
Q 013810 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (436)
Q Consensus 187 i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~ 265 (436)
|||.+ ++++++++++++.++++.+.. ...++|+|||+|++|+|+|..|++.+
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~~---------------~~~k~vvViGgG~iG~E~A~~l~~~g------------ 53 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTVD---------------PEVNNVVVIGSGYIGIEAAEAFAKAG------------ 53 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHTC---------------TTCCEEEEECCSHHHHHHHHHHHHTT------------
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhhc---------------cCCCEEEEECChHHHHHHHHHhhccc------------
Confidence 68887 889999999999999887521 33469999999999999999999877
Q ss_pred CccEEEEEeCC-CCCC-cccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC---eEEEcCCcEEecceEEEec
Q 013810 266 DYIHVTLIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ---KLILNDGTEVPYGLLVWST 331 (436)
Q Consensus 266 ~~~~V~lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~---~v~~~~g~~i~~D~vi~a~ 331 (436)
.+||++++. .+++ .+++++.+.+.+.++++||+++.++ +++++.+ ...+.||++++||+|++|+
T Consensus 54 --~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 54 --KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp --CEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred --eEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 999999995 5665 5799999999999999999999995 9999764 3457899999999999984
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.70 E-value=1e-16 Score=141.65 Aligned_cols=151 Identities=22% Similarity=0.319 Sum_probs=105.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|+.|+.+|..+++.+ .+|+|+++.+.+..
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G--------------~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G 73 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEG--------------LKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANG 73 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGT
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcC
Confidence 6999999999999999999877 89999998543210
Q ss_pred -------cc------------HHHHHHHHHHHHhcCCEEEecceEEEeCCe--------------EEEcCCcEEecceEE
Q 013810 282 -------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQK--------------LILNDGTEVPYGLLV 328 (436)
Q Consensus 282 -------~~------------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~--------------v~~~~g~~i~~D~vi 328 (436)
+. ..+...+.......+++++.+.-....... ......+...+|-++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (229)
T d1ojta1 74 IKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCI 153 (229)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred CcccCCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEE
Confidence 00 011112233445567777765311111110 011112235566666
Q ss_pred EecCC-CCc---hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 329 WSTGV-GPS---TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 329 ~a~G~-~p~---~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
++.|. .|. ..++.+|+++|++|+|.||+++| ||.|+|||+|||++. +.+++.|+.||+.||+||+.
T Consensus 154 l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~-TsvpgVyAaGDv~~~---------~~l~~~A~~eG~~Aa~~i~G 223 (229)
T d1ojta1 154 IAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR-TNVPHIYAIGDIVGQ---------PMLAHKAVHEGHVAAENCAG 223 (229)
T ss_dssp ECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSB-CSSTTEEECGGGTCS---------SCCHHHHHHHHHHHHHHHTT
T ss_pred EEecccCCcccccchhhhCccCCCCCCEEcCCCcc-CCCCCEEEEEecCCC---------cchHHHHHHHHHHHHHHHcC
Confidence 66554 454 25788999999999999999999 999999999999986 67899999999999999976
Q ss_pred hc
Q 013810 405 LA 406 (436)
Q Consensus 405 ~~ 406 (436)
..
T Consensus 224 ~~ 225 (229)
T d1ojta1 224 HK 225 (229)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=1.3e-16 Score=136.84 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=118.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-----------------C-----cccHHHHH
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-----------------S-----SFDDRLRH 288 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-----------------~-----~~~~~~~~ 288 (436)
++|+|||||++|+++|..+++.+ .++.++++.... . ..++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 71 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAE--------------LKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTD 71 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--------------CCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHcC--------------CcEEEEEeecccccccccccccchhhhccccccccccchHHHH
Confidence 48999999999999999999877 889998853210 0 12356777
Q ss_pred HHHHHHHhcCCEEEecceEEEeCC---eEEEcCCcEEecceEEEecCCC-----CchhcccCCCCCCCCCcEEeCC-CCC
Q 013810 289 YATTQLSKSGVRLVRGIVKDVDSQ---KLILNDGTEVPYGLLVWSTGVG-----PSTLVKSLDLPKSPGGRIGIDE-WLR 359 (436)
Q Consensus 289 ~~~~~l~~~gV~i~~~~v~~i~~~---~v~~~~g~~i~~D~vi~a~G~~-----p~~~~~~~~l~~~~~G~i~vd~-~~~ 359 (436)
.+.+.+++.|+++..+.|.+++.. .....+..+..+|.+++++|.. |+..+..-++++|++|+|.+|+ .++
T Consensus 72 ~~~~q~~~~g~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~ 151 (192)
T d1vdca1 72 KFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQ 151 (192)
T ss_dssp HHHHHHHHTTCEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCB
T ss_pred HHHHHHHhhcceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceE
Confidence 777778888999988777776542 2334556678999999999853 5432333478899999999996 567
Q ss_pred CCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 360 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
|+.|+|||+|||.+.+ .+.+..|+.+|..||.++..+.
T Consensus 152 -Ts~~GV~a~GDv~~~~--------~r~~v~A~g~G~~aA~~~~~yl 189 (192)
T d1vdca1 152 -TSVPGVFAAGDVQDKK--------YRQAITAAGTGCMAALDAEHYL 189 (192)
T ss_dssp -CSSTTEEECGGGGCSS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred -ecCCCEEEeeecCCcc--------cceEEEEEechHHHHHHHHHHH
Confidence 9999999999999863 4678999999999999887653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=1e-16 Score=125.17 Aligned_cols=87 Identities=29% Similarity=0.425 Sum_probs=79.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||+|++|+|+|..|++++ .+||++++. .+++.+++++.+.+.+.|+++||++++++ ++++
T Consensus 23 ~vvIiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i 88 (116)
T d1gesa2 23 RVAVVGAGYIGVELGGVINGLG--------------AKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAV 88 (116)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEE
T ss_pred EEEEECCChhhHHHHHHhhccc--------------cEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 9999999999999999999887 899999995 68899999999999999999999999995 8887
Q ss_pred eCC-----eEEEcCCcEEecceEEEecC
Q 013810 310 DSQ-----KLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 310 ~~~-----~v~~~~g~~i~~D~vi~a~G 332 (436)
..+ .+.+++|+++++|.||+|+|
T Consensus 89 ~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 89 VKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 642 47788999999999999998
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=1.5e-16 Score=141.09 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=112.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----c-------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----S------------------------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----~------------------------- 281 (436)
.|+|||+|+.|+.+|..+++++ .+|.+++..+... .
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G--------------~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~ 70 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFD--------------KKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQA 70 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGC--------------CCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhH
Confidence 5999999999999999999877 9999999632100 0
Q ss_pred ----------------cc------------HHHHHHHHHHHHhcCCEEEecceEEEeCCeEEE--cCCc--EEecceEEE
Q 013810 282 ----------------FD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL--NDGT--EVPYGLLVW 329 (436)
Q Consensus 282 ----------------~~------------~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~--~~g~--~i~~D~vi~ 329 (436)
.+ ..+.+.+...+++.+|+++.+.-.-...+.+.. .++. .+.++.+++
T Consensus 71 ~~~~~~~gi~~~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi 150 (235)
T d1h6va1 71 LKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLI 150 (235)
T ss_dssp HHHTTTTTBCCCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEE
T ss_pred hhhhhccccccccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceeccccccccccccccccee
Confidence 00 001122344566778999887644444444333 3443 588999999
Q ss_pred ecCCCCch-----------hcccCCCCCCC-CCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHH
Q 013810 330 STGVGPST-----------LVKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHL 397 (436)
Q Consensus 330 a~G~~p~~-----------~~~~~~l~~~~-~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~ 397 (436)
++|.+|.. .+...+++++. .|+|.||+++| |+.|+|||+|||+..+ +.+++.|+.+|+.
T Consensus 151 ~~G~~p~~~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~-TsvpgIyA~GDv~~g~--------~~l~~~A~~eG~~ 221 (235)
T d1h6va1 151 ATGERPRYLGIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQ-TNVPYIYAIGDILEGK--------LELTPVAIQAGRL 221 (235)
T ss_dssp CCCEEECCCSSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSB-CSSTTEEECGGGBTTS--------CCCHHHHHHHHHH
T ss_pred ecCCCceeEEEeeccceeeccccceeeeccccCccccCCccc-cCCCCEEEEEeccCCC--------cccHHHHHHHHHH
Confidence 99988862 13455777776 59999999999 9999999999998652 6788999999999
Q ss_pred HHhhhhhhc
Q 013810 398 FQKPSFLLA 406 (436)
Q Consensus 398 aa~~i~~~~ 406 (436)
||++|+...
T Consensus 222 aa~~~~g~~ 230 (235)
T d1h6va1 222 LAQRLYGGS 230 (235)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHcCCC
Confidence 999998643
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.69 E-value=4.2e-20 Score=164.19 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=97.1
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
+....++|+|||||||||+||..|+++|++|+|+|+++.+..+........+.................+.. ....
T Consensus 45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 120 (233)
T d1djqa3 45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLK-KNKE--- 120 (233)
T ss_dssp CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHT-TCTT---
T ss_pred cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhh-ccee---
Confidence 334568999999999999999999999999999999988755433222222222221111111111111111 1111
Q ss_pred eEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCc-cccccccChHHHHHHHHHHHHhccc
Q 013810 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (436)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (436)
..++...+.+.. .+.. ++.||+||+|||+.+..+.+++.+ ........... .
T Consensus 121 ---~~~~~~~~~~~~---~~~~--------~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 173 (233)
T d1djqa3 121 ---SQLALGQKPMTA---DDVL--------QYGADKVIIATGASECTLWNELKARESEWAENDIKG-------------I 173 (233)
T ss_dssp ---CEEECSCCCCCH---HHHH--------TSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCE-------------E
T ss_pred ---eeeecccccccc---hhhh--------hhccceeeeccCCCcccccccccccccccchhhhhh-------------h
Confidence 111222222111 1122 678999999999987766544432 11111111000 0
Q ss_pred cCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.. .....++++|+|+|++|+|+|.+|++.+ .+|+++++.+
T Consensus 174 ~~-------~~~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~r~~ 213 (233)
T d1djqa3 174 YL-------IGDAEAPRLIADATFTGHRVAREIEEAN--------------PQIAIPYKRE 213 (233)
T ss_dssp EE-------CGGGTSCCCHHHHHHHHHHHHHTTTSSC--------------TTSCCCCCCC
T ss_pred hh-------ccccCCceeEecCchHHHHHHHHHHhcC--------------CceEEEEecc
Confidence 00 0123458999999999999999998765 8899999853
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.68 E-value=9.5e-17 Score=125.30 Aligned_cols=87 Identities=20% Similarity=0.352 Sum_probs=77.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKD 308 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~ 308 (436)
++|+|||||++|+|+|..|++++ .+|+++++ +.+++.+++++++.+.+.|+++||++++++ +++
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g--------------~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLG--------------IDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CEEEEECCchHHHHHHHHHHhcc--------------ccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 49999999999999999999877 99999999 468899999999999999999999999995 888
Q ss_pred EeC--C---eEEEcCCcEE-ecceEEEec
Q 013810 309 VDS--Q---KLILNDGTEV-PYGLLVWST 331 (436)
Q Consensus 309 i~~--~---~v~~~~g~~i-~~D~vi~a~ 331 (436)
++. + .+.+++|+++ .+|.|++|+
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 863 2 3778999887 479999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=1.4e-16 Score=127.43 Aligned_cols=110 Identities=27% Similarity=0.438 Sum_probs=94.9
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
++++++++++++..+++.+ ..+++++|||||++|+|+|..|++.+ .+|+
T Consensus 14 ~~v~~lr~~~d~~~l~~~~-----------------~~~k~v~VIGgG~iG~E~A~~l~~~g--------------~~Vt 62 (133)
T d1q1ra2 14 NNFRYLRTLEDAECIRRQL-----------------IADNRLVVIGGGYIGLEVAATAIKAN--------------MHVT 62 (133)
T ss_dssp TTEEESSSHHHHHHHHHTC-----------------CTTCEEEEECCSHHHHHHHHHHHHTT--------------CEEE
T ss_pred CCeeEeCCHHHHHHHHHhh-----------------ccCCEEEEECCchHHHHHHHHHHhhC--------------ccee
Confidence 5678889999999988764 33469999999999999999999876 9999
Q ss_pred EEeCC-CCCC-cccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-------eEEEcCCcEEecceEEEecC
Q 013810 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-------KLILNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 272 lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-------~v~~~~g~~i~~D~vi~a~G 332 (436)
++++. .+++ .+++++.+.+.+.++++||+++.+. +++++.. .+.++||+++++|+||+|+|
T Consensus 63 vie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 63 LLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred eeeecccccccccchhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99995 5565 5789999999999999999999995 8888542 47789999999999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=4.3e-18 Score=142.80 Aligned_cols=124 Identities=18% Similarity=0.192 Sum_probs=84.4
Q ss_pred CCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
....++|+|||||||||+||..|+++|++|+|||+.+.++....+.....+.....+ +.+......+..+++++.+
T Consensus 40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~----~~~~~~~~~~~~gV~i~l~ 115 (179)
T d1ps9a3 40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYE----TLRYYRRMIEVTGVTLKLN 115 (179)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHH----HHHHHHHHHHHHTCEEEES
T ss_pred CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHH----HHHHHHHhhhcCCeEEEeC
Confidence 345689999999999999999999999999999999887665433322322222222 2222222334457777665
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCccccccccChHHHHHHHHHHHHhccccC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (436)
+... ... ...||++|+|||+.|+.+.+||.+
T Consensus 116 ~~Vt--------------~~~--------~~~~d~vilAtG~~~~~~~~pg~~--------------------------- 146 (179)
T d1ps9a3 116 HTVT--------------ADQ--------LQAFDETILASGIPNRALAQPLID--------------------------- 146 (179)
T ss_dssp CCCC--------------SSS--------SCCSSEEEECCCEECCTTHHHHHT---------------------------
T ss_pred CEEc--------------ccc--------cccceeEEEeecCCCcccccchhc---------------------------
Confidence 3211 111 457999999999988776665531
Q ss_pred CCCCChhhhcccCcEEEECCChHHHHH
Q 013810 219 VPGISEEEKSRLLHCVVVGGGPTGVEF 245 (436)
Q Consensus 219 ~p~~~~~~~~~~~~vvViG~G~~g~e~ 245 (436)
.+++++|||+|++++++
T Consensus 147 ----------~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 147 ----------SGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp ----------TTCCEEECGGGTCCSSC
T ss_pred ----------cCCEEEEECCcHhhhhc
Confidence 12489999999998886
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.67 E-value=9.6e-16 Score=134.41 Aligned_cols=150 Identities=30% Similarity=0.450 Sum_probs=108.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.++|||+|+.|+++|..+++++ .+|+|++++.+..
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~ 72 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLG--------------IPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSP 72 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhcccccc
Confidence 7999999999999999999988 9999998753210
Q ss_pred --------ccc-H-----------HHHHHHHHHHHhcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCchh--
Q 013810 281 --------SFD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL-- 338 (436)
Q Consensus 281 --------~~~-~-----------~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-- 338 (436)
... . .........+...+++++.+.-.-.+...+. .++.++.+|.+++|+|.+|..+
T Consensus 73 ~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~-~~~~~i~a~~viiAtG~~p~~lp~ 151 (220)
T d1lvla1 73 LGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE-VDGQRIQCEHLLLATGSSSVELPR 151 (220)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEE-ETTEEEECSEEEECCCEEECCBTE
T ss_pred ceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCccccc-ccceeEeeceeeEcCCCCcccccc
Confidence 000 0 0011122345566777777643333333333 4567899999999999988632
Q ss_pred --------cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 339 --------VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 339 --------~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+...+++++ +|+|.||+++| |+.|+|||+|||+.. +.+++.|..+|+.||++|+...+
T Consensus 152 ~~~~~~~~~~~~~~~~~-~g~i~vd~~~~-T~~~~I~A~GDv~~~---------~~l~~~a~~~g~~~a~~i~G~~~ 217 (220)
T d1lvla1 152 RPRTKGFNLECLDLKMN-GAAIAIDERCQ-TSMHNVWAIGDVAGE---------PMLAHRAMAQGEMVAEIIAGKAR 217 (220)
T ss_dssp EECCSSSSGGGSCCCEE-TTEECCCTTCB-CSSTTEEECGGGGCS---------SCCHHHHHHHHHHHHHHHTTCCC
T ss_pred cccccCCcceeeehhhc-CCcccccchhh-cCCCCEEEEEEeCCc---------ccchhhhhhhHHHHHHHHcCCCC
Confidence 222333333 67899999999 999999999999986 78999999999999999986543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.66 E-value=4.5e-16 Score=121.90 Aligned_cols=91 Identities=26% Similarity=0.448 Sum_probs=80.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||||++|+|+|..++++. ..+.+|+++++. .+++.+++++.+.+++.++++||++++++ ++++
T Consensus 20 ~v~IiGgG~ig~E~A~~l~~~~-----------~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i 88 (117)
T d1feca2 20 RALCVGGGYISIEFAGIFNAYK-----------ARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKV 88 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHS-----------CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEE
T ss_pred eEEEECCChHHHHHHHHhHhhc-----------ccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEE
Confidence 9999999999999999988763 235899999995 68899999999999999999999999995 9998
Q ss_pred eCC-----eEEEcCCcEEecceEEEecCC
Q 013810 310 DSQ-----KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 310 ~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+.+ .+.+++|++++||.||+|+|+
T Consensus 89 ~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 89 TKNADGTRHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred EECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence 632 478899999999999999995
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.65 E-value=6.6e-16 Score=136.98 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=59.6
Q ss_pred EEecceEEEecCCCCch----------h-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHH
Q 013810 321 EVPYGLLVWSTGVGPST----------L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQ 389 (436)
Q Consensus 321 ~i~~D~vi~a~G~~p~~----------~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~ 389 (436)
.+++|.++++++..|.. + ....++.++ +|+|.||+++| |+.|+|||+|||.+. +.+.+
T Consensus 149 ~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~-~G~I~vde~~~-T~~~~iyAvGDv~~~---------~~l~~ 217 (238)
T d1aoga1 149 RLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIK-NGGVQVDEYSR-TNVSNIYAIGDVTNR---------VMLTP 217 (238)
T ss_dssp EEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEE-TTEECCCTTCB-CSSTTEEECGGGGTS---------CCCHH
T ss_pred cccccceeeecccccccccccccceeeecccccEEEEc-CCeEEecCCee-eccCCEEEEEEecCC---------ccchh
Confidence 46777777766655531 1 244567665 78999999999 999999999999986 78899
Q ss_pred HHHHHHHHHHhhhhhh
Q 013810 390 VSYEQLHLFQKPSFLL 405 (436)
Q Consensus 390 ~A~~~g~~aa~~i~~~ 405 (436)
.|..||+.||++|+..
T Consensus 218 ~A~~eg~~aa~~i~g~ 233 (238)
T d1aoga1 218 VAINEAAALVDTVFGT 233 (238)
T ss_dssp HHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHcCC
Confidence 9999999999999864
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=2.1e-15 Score=128.99 Aligned_cols=155 Identities=18% Similarity=0.135 Sum_probs=115.1
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC------------C-----cccHHHHHHHH
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------S-----SFDDRLRHYAT 291 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l------------~-----~~~~~~~~~~~ 291 (436)
+.++|+|||||++|++.|..+++.+ .+|+++++.... + ..+.++.+...
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g--------------~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 69 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARAN--------------LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMH 69 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTT--------------CCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC--------------CceEEEEeecccccccccchhhhhhccccccchHHHHHHHH
Confidence 3458999999999999999999877 899999874210 1 12356677777
Q ss_pred HHHHhcCCEEEecceEEEeCC--e-EEEcCCcEEecceEEEecCCCCch---h--cccCCCCCCCCCcEEeCC-----CC
Q 013810 292 TQLSKSGVRLVRGIVKDVDSQ--K-LILNDGTEVPYGLLVWSTGVGPST---L--VKSLDLPKSPGGRIGIDE-----WL 358 (436)
Q Consensus 292 ~~l~~~gV~i~~~~v~~i~~~--~-v~~~~g~~i~~D~vi~a~G~~p~~---~--~~~~~l~~~~~G~i~vd~-----~~ 358 (436)
+.+.+.++++..+.|.+++.. . .......++.++.+++++|..|.. . .-.-.++++ +|+|.+|+ .+
T Consensus 70 ~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~ 148 (190)
T d1trba1 70 EHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNAT 148 (190)
T ss_dssp HHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTT
T ss_pred HHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCccccc
Confidence 888889999988877777642 2 233445679999999999976641 1 111123443 58899985 45
Q ss_pred CCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhcC
Q 013810 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 359 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
+ |+.|+|||+|||+..+ .+++..|+.+|..||.++..+..
T Consensus 149 ~-T~v~gV~aaGDv~~~~--------~~q~i~Aag~G~~AA~~a~~yl~ 188 (190)
T d1trba1 149 Q-TSIPGVFAAGDVMDHI--------YRQAITSAGTGCMAALDAERYLD 188 (190)
T ss_dssp B-CSSTTEEECGGGGCSS--------SCCHHHHHHHHHHHHHHHHHHHT
T ss_pred c-cccCeEEEeEEecCcc--------eeEEEEEeccHHHHHHHHHHHHh
Confidence 7 8999999999999752 46889999999999988876643
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.4e-15 Score=122.37 Aligned_cols=115 Identities=17% Similarity=0.298 Sum_probs=96.1
Q ss_pred cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 192 ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
+.++.+++++++.++.+.+ +..++++|||||++|+|+|..|++... ..+.+|+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~-----------------~~~k~i~IvGgG~~G~E~A~~l~~~~~----------~~g~~Vt 68 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKIS-----------------REVKSITIIGGGFLGSELACALGRKAR----------ALGTEVI 68 (137)
T ss_dssp HTEEECCSHHHHHHHHHHH-----------------HHCSEEEEECCSHHHHHHHHHHHHHHH----------HHTCEEE
T ss_pred CcEEEEcCHHHHHHHHHHh-----------------hcCCEEEEECCCHHHHHHHHHHHHHHH----------hcCCEEE
Confidence 4577788999999888775 344699999999999999999976431 1247999
Q ss_pred EEeCC-CCCC-cccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCC
Q 013810 272 LIEAN-EILS-SFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 272 lv~~~-~~l~-~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (436)
++++. .+++ .+++++.+.+.+.++++||+++.++ |++++.+ .+.+++|++++||+||+|+|.
T Consensus 69 ~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 69 QLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp EECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred EecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence 99995 4565 5899999999999999999999995 8888653 588899999999999999994
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.62 E-value=3.1e-15 Score=116.87 Aligned_cols=89 Identities=27% Similarity=0.456 Sum_probs=79.0
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||||++|+|+|..+..++ ..+.+||++++ +.+++.+++++.+.+.+.|+++||+++++. ++++
T Consensus 22 ~v~ivGgG~ig~E~A~~l~~l~-----------~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~i 90 (117)
T d1aoga2 22 RVLTVGGGFISVEFAGIFNAYK-----------PKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKV 90 (117)
T ss_dssp EEEEECSSHHHHHHHHHHHHHC-----------CTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEE
T ss_pred eEEEECCcHHHHHHHHHhhhcc-----------cCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEE
Confidence 9999999999999999998876 34578999999 468899999999999999999999999995 8888
Q ss_pred eC--C---eEEEcCCcEEecceEEEec
Q 013810 310 DS--Q---KLILNDGTEVPYGLLVWST 331 (436)
Q Consensus 310 ~~--~---~v~~~~g~~i~~D~vi~a~ 331 (436)
+. + .+.+++|++++||.||+|+
T Consensus 91 e~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 91 ELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EECTTSCEEEEETTSCEEEESEEEECS
T ss_pred EEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 63 2 3788999999999999985
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.60 E-value=2.2e-15 Score=118.73 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=76.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||+|++|+|+|..++.+| .+|+++++. .+++.+++++.+.+.+.++++||+++.++ +.++
T Consensus 28 ~vvIiGgG~IG~E~A~~~~~~G--------------~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v 93 (125)
T d1ojta2 28 KLLIIGGGIIGLEMGTVYSTLG--------------SRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAV 93 (125)
T ss_dssp EEEEESCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEE
T ss_pred eEEEECCCHHHHHHHHHhhcCC--------------CEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEE
Confidence 9999999999999999999998 999999994 68899999999999999999999999995 8887
Q ss_pred eC--Ce--EEEc--CC--cEEecceEEEecCC
Q 013810 310 DS--QK--LILN--DG--TEVPYGLLVWSTGV 333 (436)
Q Consensus 310 ~~--~~--v~~~--~g--~~i~~D~vi~a~G~ 333 (436)
+. ++ +.+. +| +++++|.|++|+|+
T Consensus 94 ~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 94 EPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 63 43 3443 33 46999999999995
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=4.5e-15 Score=115.60 Aligned_cols=87 Identities=30% Similarity=0.450 Sum_probs=78.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||||++|+|+|..|++++ ++||++++ +.+++.+++++.+.+.+.|+++||++++++ |+++
T Consensus 23 ~vvIiGgG~~G~E~A~~l~~~g--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 88 (115)
T d1lvla2 23 HLVVVGGGYIGLELGIAYRKLG--------------AQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGY 88 (115)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEE
T ss_pred eEEEECCCHHHHHHHHHHhhcc--------------cceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEE
Confidence 9999999999999999999987 99999999 578899999999999999999999999995 9999
Q ss_pred eCCeEEEcC----CcEEecceEEEecC
Q 013810 310 DSQKLILND----GTEVPYGLLVWSTG 332 (436)
Q Consensus 310 ~~~~v~~~~----g~~i~~D~vi~a~G 332 (436)
+++.....+ +++++||.|++|+|
T Consensus 89 ~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 89 ENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred cCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 887655432 35799999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.59 E-value=7.2e-15 Score=114.99 Aligned_cols=94 Identities=24% Similarity=0.458 Sum_probs=81.2
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQ 293 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~ 293 (436)
.+..+|. +++|||+|++|+|+|..|+++| ++|+++++. ++++.+++++.+.+++.
T Consensus 17 ~l~~~p~----------~i~IiG~G~ig~E~A~~l~~~G--------------~~Vtiv~~~~~ll~~~d~ei~~~l~~~ 72 (119)
T d3lada2 17 DFQNVPG----------KLGVIGAGVIGLELGSVWARLG--------------AEVTVLEAMDKFLPAVDEQVAKEAQKI 72 (119)
T ss_dssp SCSSCCS----------EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHH
T ss_pred CcccCCC----------eEEEECCChHHHHHHHHHHHcC--------------CceEEEEeecccCCcccchhHHHHHHH
Confidence 4566675 9999999999999999999988 999999994 68899999999999999
Q ss_pred HHhcCCEEEecc-eEEEeC--Ce--EEEcCC---cEEecceEEEecC
Q 013810 294 LSKSGVRLVRGI-VKDVDS--QK--LILNDG---TEVPYGLLVWSTG 332 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~--~~--v~~~~g---~~i~~D~vi~a~G 332 (436)
+++.||+++++. +++++. ++ +.+.++ ++++||.|++|+|
T Consensus 73 l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 73 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred HHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 999999999995 888864 33 555443 5799999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.55 E-value=1.5e-14 Score=112.95 Aligned_cols=85 Identities=27% Similarity=0.505 Sum_probs=73.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||||++|+|+|..++++| .+||++++. .+++.+++++.+.+.+.|+++||+++++. ++++
T Consensus 24 ~v~IiGgG~ig~E~A~~l~~~G--------------~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i 89 (117)
T d1ebda2 24 SLVVIGGGYIGIELGTAYANFG--------------TKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALAKGA 89 (117)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEEEEE
T ss_pred eEEEECCCccceeeeeeecccc--------------cEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEEEEE
Confidence 9999999999999999999987 999999994 68899999999999999999999999995 8888
Q ss_pred eC--Ce--EEE-cCC--cEEecceEEEe
Q 013810 310 DS--QK--LIL-NDG--TEVPYGLLVWS 330 (436)
Q Consensus 310 ~~--~~--v~~-~~g--~~i~~D~vi~a 330 (436)
+. ++ +.+ .+| +++++|.|+++
T Consensus 90 ~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 90 EEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred EEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 64 33 333 344 46999999974
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=2.4e-14 Score=112.32 Aligned_cols=95 Identities=20% Similarity=0.411 Sum_probs=79.4
Q ss_pred ccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHH
Q 013810 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (436)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~ 293 (436)
+.+...|. +++|||+|++|+|+|..|+++| .+|++++++++++.+++++.+.+.+.
T Consensus 14 ~~l~~~P~----------~vvIIGgG~iG~E~A~~l~~lG--------------~~Vtii~~~~~l~~~D~~~~~~l~~~ 69 (122)
T d1h6va2 14 FSLPYCPG----------KTLVVGASYVALECAGFLAGIG--------------LDVTVMVRSILLRGFDQDMANKIGEH 69 (122)
T ss_dssp TTCSSCCC----------SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSSSTTSCHHHHHHHHHH
T ss_pred hCcccCCC----------eEEEECCCccHHHHHHHHhhcC--------------CeEEEEEechhhccCCHHHHHHHHHH
Confidence 44566675 9999999999999999999988 99999999889999999999999999
Q ss_pred HHhcCCEEEecc-eEEEeC------C--eEEEcCC-----cEEecceEEEecC
Q 013810 294 LSKSGVRLVRGI-VKDVDS------Q--KLILNDG-----TEVPYGLLVWSTG 332 (436)
Q Consensus 294 l~~~gV~i~~~~-v~~i~~------~--~v~~~~g-----~~i~~D~vi~a~G 332 (436)
|++.||+++++. +++++. . .+.+.++ ..++||.|++|+|
T Consensus 70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999999994 777642 1 2333322 2468999999998
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.3e-14 Score=111.03 Aligned_cols=87 Identities=30% Similarity=0.473 Sum_probs=74.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||+|++|+|+|..|++++ .+||++++. .+++.+++++.+.+.+.|++.||+++.+. ++++
T Consensus 24 ~vvIvGgG~iG~E~A~~l~~~G--------------~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 89 (125)
T d3grsa2 24 RSVIVGAGYIAVEMAGILSALG--------------SKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEV 89 (125)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred EEEEEcCCccHHHHHHHHhcCC--------------cEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 9999999999999999999987 999999995 68899999999999999999999999995 8888
Q ss_pred eC--CeEEE-----cCCc------EEecceEEEecC
Q 013810 310 DS--QKLIL-----NDGT------EVPYGLLVWSTG 332 (436)
Q Consensus 310 ~~--~~v~~-----~~g~------~i~~D~vi~a~G 332 (436)
+. +++.+ .+|+ .+++|.|++|+|
T Consensus 90 ~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 90 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 53 44322 2332 478999999987
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=6.6e-14 Score=109.85 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=73.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC-CCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA-NEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~-~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||+|++|+|+|..|+++| .+||++++ +.+++.+++++.+.+++.++++||+++++. ++++
T Consensus 25 ~~vIiG~G~ig~E~A~~l~~lG--------------~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v 90 (122)
T d1v59a2 25 RLTIIGGGIIGLEMGSVYSRLG--------------SKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISA 90 (122)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEE
T ss_pred eEEEECCCchHHHHHHHHHhhC--------------cceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEE
Confidence 9999999999999999999988 99999998 568899999999999999999999999995 8877
Q ss_pred eC--C--e--EEEcCC-----cEEecceEEEe
Q 013810 310 DS--Q--K--LILNDG-----TEVPYGLLVWS 330 (436)
Q Consensus 310 ~~--~--~--v~~~~g-----~~i~~D~vi~a 330 (436)
+. + . +.+.++ +++++|.|++|
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 91 KRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 53 2 2 333333 36999999986
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1.8e-13 Score=116.04 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=116.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC---CC--------Cc----ccHHHHHHHHHHHHh
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE---IL--------SS----FDDRLRHYATTQLSK 296 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~---~l--------~~----~~~~~~~~~~~~l~~ 296 (436)
.|+|||||++|+++|..+++.+ .+|.++++.. +. +. ..+.+...+...+++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G--------------~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKG--------------IRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhh
Confidence 5999999999999999999877 8999998631 11 11 125566666777777
Q ss_pred cCCEEEecc-eEEEeC-------CeEEEcCCcEEecceEEEecCCCCc-hhcccCCCCCCCCCcEEeCCCCCCCCCCCEE
Q 013810 297 SGVRLVRGI-VKDVDS-------QKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~-------~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vy 367 (436)
.+++..... +..+.. ......++.++.++.++.++|..++ ......++.....|.|.+|...+ |+.|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~-t~~~gv~ 147 (184)
T d1fl2a1 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCE-TNVKGVF 147 (184)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCB-CSSTTEE
T ss_pred eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCcee-eeCCCEE
Confidence 788877663 444432 1244566778999999999998766 45555667777889999999999 9999999
Q ss_pred EeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 368 AVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 368 a~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++|||...+ .+....|+.+|..||.++..+.
T Consensus 148 a~gd~~~~~--------~~~~vva~g~G~~aA~~~~~~l 178 (184)
T d1fl2a1 148 AAGDCTTVP--------YKQIIIATGEGAKASLSAFDYL 178 (184)
T ss_dssp ECSTTBSCS--------SCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeecCcc--------cCCcEEEEECcHHHHHHHHHHH
Confidence 999999863 3567889999999998877653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.49 E-value=1.2e-13 Score=108.64 Aligned_cols=86 Identities=27% Similarity=0.403 Sum_probs=74.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDV 309 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i 309 (436)
+++|||+|++|+|+|..++++| .+||++++. .+++.+++++.+.+.+.|++.||+++++. +.++
T Consensus 27 ~~viiG~G~iglE~A~~~~~~G--------------~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i 92 (123)
T d1dxla2 27 KLVVIGAGYIGLEMGSVWGRIG--------------SEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGV 92 (123)
T ss_dssp EEEESCCSHHHHHHHHHHHHHT--------------CEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEE
T ss_pred eEEEEccchHHHHHHHHHHhcC--------------CeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEE
Confidence 9999999999999999999988 999999995 58899999999999999999999999995 8888
Q ss_pred eCC--e--EEE--c-CC--cEEecceEEEec
Q 013810 310 DSQ--K--LIL--N-DG--TEVPYGLLVWST 331 (436)
Q Consensus 310 ~~~--~--v~~--~-~g--~~i~~D~vi~a~ 331 (436)
+.. + +.+ . +| ++++||.|++|.
T Consensus 93 ~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 93 DTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp ECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 753 2 333 2 33 358999999874
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.49 E-value=7.2e-14 Score=109.89 Aligned_cols=89 Identities=18% Similarity=0.324 Sum_probs=76.4
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VK 307 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~ 307 (436)
+++|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.+++.||+++++. +.
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g--------------~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~ 87 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATG--------------RRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVT 87 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcc--------------hhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEE
Confidence 359999999999999999999877 999999995 57899999999999999999999999995 88
Q ss_pred EEeCC---e---EE---EcCCcEEecceEEEecC
Q 013810 308 DVDSQ---K---LI---LNDGTEVPYGLLVWSTG 332 (436)
Q Consensus 308 ~i~~~---~---v~---~~~g~~i~~D~vi~a~G 332 (436)
+++.+ . +. ..++++++||+||+|+|
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 88 RIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 88643 1 21 13456799999999998
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=6.3e-15 Score=128.75 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=90.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchh----hh-----------hh------cCcc------ccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------TC------VGTL------EFR 114 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~----~~-----------~~------~~~~------~~~ 114 (436)
+|||+||||||||++||.++++.|.+|+|||++. ++..... +. .. .+.. +..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWE 80 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHH
Confidence 5899999999999999999999999999999864 2211000 00 00 0000 000
Q ss_pred ccc-------cchhhcchhhhcCCCcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 115 SVA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 115 ~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
.+. ..+......+....++.+....-...+. ..+. .++. .+.++.+++|||+.|..|++
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--~~~~----~~~~--------~~~~~~~iiatG~~p~ip~i 146 (217)
T d1gesa1 81 TLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLE----VNGE--------TITADHILIATGGRPSHPRE 146 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEE----ETTE--------EEEEEEEEECCCEEECCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--eeec----CCCc--------eeeeeeeeeecCccccCCCC
Confidence 000 0000111112333456555443222221 1221 1343 78999999999999999988
Q ss_pred CCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH
Q 013810 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (436)
Q Consensus 188 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~ 254 (436)
|+.+.-.+....+..... ........+ +...++|+|||+|.+|+|+|..+++.|.
T Consensus 147 p~~~~l~l~~~gv~~~~~------~~i~~d~~~------~t~~~~i~~iG~g~~g~ela~~~~~~G~ 201 (217)
T d1gesa1 147 PANDNINLEAAGVKTNEK------GYIVVDKYQ------NTNIEGIYAVGDNTGAVELTPVAVAAGR 201 (217)
T ss_dssp ESCTTSCHHHHTCCBCTT------SCBCCCTTS------BCSSTTEEECSGGGTSCCCHHHHHHHHH
T ss_pred CCcCCcccccccEEEcCC------ccEeeCchh------ccCCCcEEEECCCccHHHHHHHHHHHHH
Confidence 876421110000000000 000001111 1233489999999999999999988873
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=6.3e-13 Score=115.75 Aligned_cols=150 Identities=22% Similarity=0.396 Sum_probs=111.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCc------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------------------------------ 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~------------------------------ 281 (436)
.|+|||+|+.|+++|..+++++ .+|.+++++.+...
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G--------------~kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g 69 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYG--------------QKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYG 69 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--------------CCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGT
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcC
Confidence 5999999999999999999877 89999998542100
Q ss_pred -------cc-H-----------HHHHHHHHHHHhcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCc-h---h
Q 013810 282 -------FD-D-----------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-T---L 338 (436)
Q Consensus 282 -------~~-~-----------~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~---~ 338 (436)
++ + .+...++..+++.||++....-....... ...+++.+.++.+++++|..|. + .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~-~~~~~~~~~~~~~iiatG~~p~ip~ip~ 148 (217)
T d1gesa1 70 FDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKT-LEVNGETITADHILIATGGRPSHPREPA 148 (217)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTE-EEETTEEEEEEEEEECCCEEECCCEEES
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeee-ecCCCceeeeeeeeeecCccccCCCCCC
Confidence 00 0 11122334466778888776432233333 2346678999999999998765 2 1
Q ss_pred -----cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 339 -----VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 339 -----~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+...++.++++|++.+|+.++ |+.++||++||+... +.+++.+.++|+.++.+++...
T Consensus 149 ~~~l~l~~~gv~~~~~~~i~~d~~~~-t~~~~i~~iG~g~~g---------~ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 149 NDNINLEAAGVKTNEKGYIVVDKYQN-TNIEGIYAVGDNTGA---------VELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp CTTSCHHHHTCCBCTTSCBCCCTTSB-CSSTTEEECSGGGTS---------CCCHHHHHHHHHHHHHHHHTTC
T ss_pred cCCcccccccEEEcCCccEeeCchhc-cCCCcEEEECCCccH---------HHHHHHHHHHHHHHHHHHhCCC
Confidence 233467889999999999999 899999999999987 7789999999999999887654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.43 E-value=1.6e-13 Score=113.06 Aligned_cols=138 Identities=10% Similarity=-0.031 Sum_probs=104.3
Q ss_pred eCCCCCCCC-CCCCCccccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEE--CCChHHHHHHHHHHHHH
Q 013810 177 ALGAEASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVV--GGGPTGVEFSGELSDFI 253 (436)
Q Consensus 177 AtG~~~~~~-~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVi--G~G~~g~e~A~~l~~~~ 253 (436)
|||+.|..| +|||.+....++.+.+++... ...|+ +.++|+ |||++|+|+|..|++.|
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~----------~~~~~---------~~vvi~d~ggg~ig~e~A~~la~~G 64 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDG----------KKKIG---------KRVVILNADTYFMAPSLAEKLATAG 64 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHT----------CSCCC---------SEEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcC----------ccccC---------CceEEEecCCChHHHHHHHHHHHcC
Confidence 899999887 899997322222244554331 22232 355555 99999999999999987
Q ss_pred HHHHHhhhcCCCCccEEEEEeCC-CCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEec
Q 013810 254 MRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWST 331 (436)
Q Consensus 254 ~~~~~~~~~~~~~~~~V~lv~~~-~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~ 331 (436)
.+||++++. .+++.+++.....+.+.|++.||+++++. +.+++.+.+.+.+.....++.++.+.
T Consensus 65 --------------~~Vtlv~~~~~~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~v~l~~~~~~~~~~v~~~~ 130 (156)
T d1djqa2 65 --------------HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGP 130 (156)
T ss_dssp --------------CEEEEEESSCTTTHHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETTEEEEEETTCSCSCCCCCCT
T ss_pred --------------CeEEEEecCCccccccchhHHHHHHHHHhhccceEEeccEEEEecCcceEEEeeeccccceeeeee
Confidence 999999995 46677777888889999999999999995 99999999888777667778888888
Q ss_pred CCCCc-hhcccCCCCCC
Q 013810 332 GVGPS-TLVKSLDLPKS 347 (436)
Q Consensus 332 G~~p~-~~~~~~~l~~~ 347 (436)
|..|+ ......+++.|
T Consensus 131 g~~~~~~~~~~~~le~D 147 (156)
T d1djqa2 131 GVSPRDANTSHRWIEFD 147 (156)
T ss_dssp TSCSSCCCCCCEEEECS
T ss_pred EEEecccCCccCcEecc
Confidence 88887 34555555443
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=7.9e-13 Score=118.04 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhcCCEEEecc-eEEEeC--C-----eEEEcCCcEEecceEEEecCCCCc----------hhcccCCCC
Q 013810 284 DRLRHYATTQLSKSGVRLVRGI-VKDVDS--Q-----KLILNDGTEVPYGLLVWSTGVGPS----------TLVKSLDLP 345 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~-----~v~~~~g~~i~~D~vi~a~G~~p~----------~~~~~~~l~ 345 (436)
.++.+.+.+.+++.||+++.+. |++++. + .+...++.++.||.||+|+|-.+. .+++.+++.
T Consensus 109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~ 188 (253)
T d2gqfa1 109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIP 188 (253)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhcccc
Confidence 5677888888999999999985 877642 1 245568889999999999995532 256666655
Q ss_pred CCC-----CCcEE---eCC-CCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 346 KSP-----GGRIG---IDE-WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 346 ~~~-----~G~i~---vd~-~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
.-+ .|.+. +|+ .|++..+|++|.+|-+.......| -...++|...|..|++.|..
T Consensus 189 i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~g----g~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 189 VIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLG----GYNFQWAWSSAYACALSISR 252 (253)
T ss_dssp EEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTT----THHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecC----CEehhhhHhHHHHHHHHHhc
Confidence 411 12233 453 477678999999998877544333 23567899999999998864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.38 E-value=3.2e-13 Score=114.13 Aligned_cols=112 Identities=24% Similarity=0.281 Sum_probs=81.3
Q ss_pred CcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
+||||||||++|+++|.+|++.+ .+|+|||+++.+...+................... .......+.+..+.+
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~ 77 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGY-----DGLRAHGIQVVHDSA 77 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECS-----HHHHTTTEEEECCCE
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhh-----hhccccceeEeeeee
Confidence 69999999999999999999866 57999999988766655444433322222221111 123345678888888
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV 190 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~ 190 (436)
..++...+.+.+. ++. .++||+||+|||..++.+.+++.
T Consensus 78 ~~~~~~~~~~~~~---~~~--------~i~~D~li~atG~~~~~~~i~~~ 116 (186)
T d1fcda1 78 TGIDPDKKLVKTA---GGA--------EFGYDRCVVAPGIELIYDKIEQR 116 (186)
T ss_dssp EECCTTTTEEEET---TSC--------EEECSEEEECCCEEECCTTSTEE
T ss_pred Eeeeeccceeecc---cce--------eeccceEEEEeccccchhhhhhh
Confidence 8888877776543 555 89999999999999988877764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.3e-13 Score=115.79 Aligned_cols=118 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCcceec-chhhhhhcCccccc--------------------ccc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLLASTCVGTLEFR--------------------SVA 117 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~~~~~-~~~~~~~~~~~~~~--------------------~~~ 117 (436)
.++++||||||+||+.+|..|++.++ +|++|++++++.|. |.++.......... ...
T Consensus 3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (213)
T d1m6ia1 3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 82 (213)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChh
Confidence 35789999999999999999998765 59999999888775 44433322211000 000
Q ss_pred cchhhcchhhhcCCCcEEEEe-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCC
Q 013810 118 EPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g 189 (436)
...........+..++.++.+ +|+.||.+.+.|.+. +|+ ++.||+||+|||+.|..+.+++
T Consensus 83 ~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~---dG~--------~i~~d~lViAtG~~~~~~~l~~ 144 (213)
T d1m6ia1 83 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN---DGS--------QITYEKCLIATGGTEPNVELAK 144 (213)
T ss_dssp GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET---TSC--------EEEEEEEEECCCEEEECCTTHH
T ss_pred hhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeec---cce--------eeccceEEEeeeeecchhhhhh
Confidence 001111111234567888876 899999998888764 777 8999999999999877666554
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.32 E-value=1.3e-12 Score=116.37 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+++||+||||||||++||+.|++.|++|+|||+++..
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3589999999999999999999999999999998654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.26 E-value=9.4e-12 Score=106.50 Aligned_cols=112 Identities=20% Similarity=0.246 Sum_probs=78.1
Q ss_pred CcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCcceecc-hhhhhhcCccc-ccccccchhhcchhhhcCCCcEEEEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLE-FRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+||+|||||++|+.+|..|++. +.+|+++|+++...|.+ .++....+... ...+ ...........++.++..
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~l~~~gi~v~~~ 76 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSV----RYMTGEKMESRGVNVFSN 76 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGS----BSCCHHHHHHTTCEEEET
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHH----HHhhHHHHHHCCcEEEEe
Confidence 4799999999999999999885 56799999988776543 23333333222 1111 111112234467887665
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCC
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~ 184 (436)
+|.++|.+.+.+.+....+|+ ++.+.||++|+|+|+.+..
T Consensus 77 ~~V~~i~~~~~~v~~~~~~~g~------~~~~~~D~li~a~G~~~~~ 117 (198)
T d1nhpa1 77 TEITAIQPKEHQVTVKDLVSGE------ERVENYDKLIISPGAVPFE 117 (198)
T ss_dssp EEEEEEETTTTEEEEEETTTCC------EEEEECSEEEECCCEEECC
T ss_pred eceeeEeeccccceeeeccccc------ccccccceeeEeecceeec
Confidence 899999999999887655654 3478999999999987654
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=7.8e-14 Score=123.38 Aligned_cols=157 Identities=13% Similarity=0.015 Sum_probs=87.8
Q ss_pred CcEEEECCchHHHHHHHhcccCC-------CeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-------YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-------~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (436)
++|+|||||||||+||.+|+++| ++|+|+|+.+.++... ..+..+.......+.+....+....++.+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~-----~~gi~p~~~~~~~~~~~~~~~~~~~g~~~ 77 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV-----RSGVAPDHPKIKSISKQFEKTAEDPRFRF 77 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHH-----HHTSCTTCTGGGGGHHHHHHHHTSTTEEE
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCee-----eeccCcccccchhhhhhhhhhhccCCceE
Confidence 68999999999999999999877 5899999998755431 11222222222233333333455677777
Q ss_pred EEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCCCCCcc-ccccccChHHHHHHHHHHHHhc
Q 013810 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNL 214 (436)
Q Consensus 136 ~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 214 (436)
+.+.... . .+.+ . +....||++++|||+.+..+.++|... .............
T Consensus 78 ~~~~~v~--~---~~~~------~------~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~--------- 131 (239)
T d1lqta2 78 FGNVVVG--E---HVQP------G------ELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRI--------- 131 (239)
T ss_dssp EESCCBT--T---TBCH------H------HHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEE---------
T ss_pred EEEEEec--c---ccch------h------hhhccccceeeecCCCccccccccccccccccchhhhhhhh---------
Confidence 7653221 1 0100 0 014579999999999877777666642 1111111000000
Q ss_pred cccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHH
Q 013810 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (436)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~ 251 (436)
.... .........+.++++|+|+|+.+++++..+..
T Consensus 132 ~~~~-~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~ 167 (239)
T d1lqta2 132 NGSP-NEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIK 167 (239)
T ss_dssp TTCS-SEEECTHHHHCSCSCTTHHHHHHHHHHHHHHH
T ss_pred cccc-ccccceeecCCCEEEEeCCCchHHHHHHHHHh
Confidence 0000 00000000123478888889999999886654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=7.4e-12 Score=107.76 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=75.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc-eec---chhhhhhcCcc----ccc--ccccchhhcchhhhcCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFT---PLLASTCVGTL----EFR--SVAEPIARIQPAISREP 131 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~-~~~---~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~ 131 (436)
.|||+||||||||++||++++|.|.++.||+++... ... |...+...+.. +.. .......+....+....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~ 81 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLR 81 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhc
Confidence 389999999999999999999999999999976321 111 11111111110 000 00111122233445667
Q ss_pred CcEEEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCC
Q 013810 132 GSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (436)
Q Consensus 132 ~~~~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~ 182 (436)
++.+++++|+.+..+++.+.-..+.+|. ++.++.||||||.--
T Consensus 82 nL~i~q~~V~dli~e~~~v~gV~t~~G~--------~~~AkaVILtTGTFL 124 (230)
T d2cula1 82 PLHLFQATATGLLLEGNRVVGVRTWEGP--------PARGEKVVLAVGSFL 124 (230)
T ss_dssp TEEEEECCEEEEEEETTEEEEEEETTSC--------CEECSEEEECCTTCS
T ss_pred CHHHHhccceeeEecccceeeEEecccc--------EEEEeEEEEccCcce
Confidence 8999999999988777766544445676 899999999999753
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=7.8e-12 Score=103.87 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=70.8
Q ss_pred cEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 64 ~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
||||||||++|+.+|..|++ +.+|+||++++.+.+. +.+.....+....... ......+....++.++.+ .|+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~v~ 76 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRL----FPYSLDWYRKRGIEIRLAEEAK 76 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGG----CSSCHHHHHHHTEEEECSCCEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhh----hHHHHHHHHhccceeeeecccc
Confidence 79999999999999999976 6799999998877665 3444444333322221 112222333456777665 788
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
.++.....+.. +++ ++.||++|+|+|..|.
T Consensus 77 ~i~~~~~~~~~----~~~--------~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 77 LIDRGRKVVIT----EKG--------EVPYDTLVLATGAPNV 106 (167)
T ss_dssp EEETTTTEEEE----SSC--------EEECSEEEECCCEECC
T ss_pred ccccccccccc----ccc--------ccccceeEEEEEecCC
Confidence 88877655432 555 8999999999998654
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.20 E-value=8.2e-13 Score=118.34 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
|||+||||||||++||.++++.|.+|+|||++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~ 34 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR 34 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 799999999999999999999999999999864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.4e-11 Score=95.46 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=66.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+|+|+.+.+. +. .+ ..+.+......+..++.++.+ .|+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l-----~~-----~d-----~~~~~~~~~~l~~~GV~~~~~~~v~ 86 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-----PS-----FD-----PMISETLVEVMNAEGPQLHTNAIPK 86 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-----TT-----SC-----HHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchhh-----hh-----cc-----hhhHHHHHHHHHHCCCEEEeCCEEE
Confidence 689999999999999999999999999999987632 10 01 112222223344568888876 777
Q ss_pred eEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.+.... ..+.+. ..+|+ ++.+|.||+|||
T Consensus 87 ~i~~~~~~~~~v~-~~~g~--------~~~~D~vi~a~G 116 (116)
T d1gesa2 87 AVVKNTDGSLTLE-LEDGR--------SETVDCLIWAIG 116 (116)
T ss_dssp EEEECTTSCEEEE-ETTSC--------EEEESEEEECSC
T ss_pred EEEEcCCcEEEEE-ECCCC--------EEEcCEEEEecC
Confidence 776543 334433 34676 899999999998
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=6.6e-12 Score=103.81 Aligned_cols=130 Identities=16% Similarity=0.222 Sum_probs=87.7
Q ss_pred CCCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHH--
Q 013810 182 ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR-- 258 (436)
Q Consensus 182 ~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~-- 258 (436)
|+.|+|||.+ +++++..++ +.+. ...+++|+|||||++|+|+|..+.+.|.....
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~-----L~~~-----------------~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~ 59 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDV-----LRDK-----------------APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNI 59 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHH-----HTSC-----------------CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCH
T ss_pred CCCCCCCCCCCCCeEEHHHH-----hhCc-----------------cccCCceEEEcCchhHHHHHHHHHHcCCccceeH
Confidence 7889999987 666653222 1110 13346999999999999999999986632110
Q ss_pred ----hhhc-----------------CCCCccEEEEEeC-CC-CCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCCeE
Q 013810 259 ----QRYS-----------------HVKDYIHVTLIEA-NE-ILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQKL 314 (436)
Q Consensus 259 ----~~~~-----------------~~~~~~~V~lv~~-~~-~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~~v 314 (436)
..+. ......+++++.. .. ....+...........++..||+++++. +.+++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~gv 139 (162)
T d1ps9a2 60 AGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGL 139 (162)
T ss_dssp HHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEE
T ss_pred hhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCCC
Confidence 0000 0112245666554 32 3345556666777888999999999984 999999887
Q ss_pred EEc-CCc--EEecceEEEecCC
Q 013810 315 ILN-DGT--EVPYGLLVWSTGV 333 (436)
Q Consensus 315 ~~~-~g~--~i~~D~vi~a~G~ 333 (436)
.+. +|+ +++||.||+|+|+
T Consensus 140 ~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 140 HVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp EEEETTEEEEECCSEEEECCCE
T ss_pred EEecCCeEEEEECCEEEECCCC
Confidence 663 443 4899999999995
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.17 E-value=4.3e-11 Score=111.14 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~~~~ 98 (436)
..++|+|||||+|||+||..|++.+ ++|+|+|+++.++
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iG 42 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG 42 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 3478999999999999999998765 6999999997753
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.16 E-value=1.2e-11 Score=112.58 Aligned_cols=121 Identities=13% Similarity=0.121 Sum_probs=76.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecc---hhhhhhcCcc----------------ccc---ccccc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP---LLASTCVGTL----------------EFR---SVAEP 119 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~---~~~~~~~~~~----------------~~~---~~~~~ 119 (436)
..||+|||||++||++|.+|++.|++|+|+|+.+.++..- ..++..+... ... .....
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e 86 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE 86 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence 4799999999999999999999999999999987654321 0011111000 000 00112
Q ss_pred hhhcchhhhcCCCc---EEEEeEeEeEe--CCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC--CCCCCCCCCCc
Q 013810 120 IARIQPAISREPGS---YFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHGVK 191 (436)
Q Consensus 120 ~~~~~~~~~~~~~~---~~~~~~v~~id--~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~--~~~~~~i~g~~ 191 (436)
+.++...+.+..++ ..+..+|+++. .+.+.+.+.. .++. ++++|+||+|||. .|..|.+++++
T Consensus 87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~-~~~~--------~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDT-NHGD--------RIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEE-TTCC--------EEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeecc-cccc--------ccccceEEEeecccccccCCcccccc
Confidence 33333334444443 22345787775 4556777764 3454 7899999999994 67777777664
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.16 E-value=6.9e-11 Score=91.84 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=68.9
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+++++.+++. +. . ..++........+..++.++.+ +|+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll-----~~-----~-----d~ei~~~l~~~l~~~Gv~i~~~~~v~ 87 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL-----PA-----V-----DEQVAKEAQKILTKQGLKILLGARVT 87 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-----TT-----S-----CHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC-----Cc-----c-----cchhHHHHHHHHHhcCceeecCcEEE
Confidence 789999999999999999999999999999987631 10 0 1122222222344578988886 888
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+++..++.+.+.....+. +.++.+|+|++|+|
T Consensus 88 ~i~~~~~~v~v~~~~~~~------~~~~~~D~vlvAvG 119 (119)
T d3lada2 88 GTEVKNKQVTVKFVDAEG------EKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEECSSCEEEEEESSSE------EEEEEESEEEECSC
T ss_pred EEEEeCCEEEEEEEECCC------CEEEECCEEEEeeC
Confidence 998877765554333322 12789999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.16 E-value=6.3e-11 Score=92.23 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=66.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+.+... . +...+.+......+..++.++.+ +|
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~-----~---------~~~~~~~~~~~~l~~~GV~i~~~~~v 95 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR-----A---------APATLADFVARYHAAQGVDLRFERSV 95 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT-----T---------SCHHHHHHHHHHHHTTTCEEEESCCE
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc-----c---------CCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 378999999999999999999999999999998763211 0 11122333333455678998776 67
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+.+.. ..+.+ .+|+ ++++|.+|+|+|
T Consensus 96 ~~~~~--~~v~l---~dg~--------~i~~D~vi~a~G 121 (121)
T d1d7ya2 96 TGSVD--GVVLL---DDGT--------RIAADMVVVGIG 121 (121)
T ss_dssp EEEET--TEEEE---TTSC--------EEECSEEEECSC
T ss_pred EEEeC--CEEEE---CCCC--------EEECCEEEEeeC
Confidence 66653 34544 4776 899999999998
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.7e-11 Score=104.09 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=71.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhh--hhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS--TCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+++||+||||||+||+||++|+|.|.+|+|||+.+.......... ...+.+... ....+.+.........++.+..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDL-TGPLLMERMHEHATKFETEIIFD 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSC-BHHHHHHHHHHHHHHTTCEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhcccccc-chHHHHHHHHHHHHhcCcEEecc
Confidence 357999999999999999999999999999998654221110000 000111110 11122222222234456777778
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~ 183 (436)
+|+.++...+.+.+.. ... .+..+.+++|+|..++
T Consensus 83 ~V~~~~~~~~~~~v~~--~~~--------~~~~~~viva~G~~~~ 117 (190)
T d1trba1 83 HINKVDLQNRPFRLNG--DNG--------EYTCDALIIATGASAR 117 (190)
T ss_dssp CEEEEECSSSSEEEEE--SSC--------EEEEEEEEECCCEEEC
T ss_pred eeEEEecCCCcEEEEE--eee--------eEeeeeeeeecceeee
Confidence 8999998877666543 333 7899999999998664
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.15 E-value=5e-11 Score=94.60 Aligned_cols=96 Identities=18% Similarity=0.320 Sum_probs=68.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||++|+.+|..|++.|.+|+|||+.+.+.-. .. ...+.+......+..++.++.+ +|
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~-----~~---------~~~~~~~~~~~~~~~GV~i~~~~~v 100 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER-----VT---------APPVSAFYEHLHREAGVDIRTGTQV 100 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT-----TS---------CHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc-----cc---------chhhhhhhhhcccccccEEEeCCeE
Confidence 378999999999999999999999999999998763111 10 1112222223345568888876 77
Q ss_pred EeEeCC--CCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 141 AGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 141 ~~id~~--~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+.++.. +..+......+|+ ++++|.||+|+|
T Consensus 101 ~~i~~~~~~~~v~~v~~~~G~--------~i~~D~vi~a~G 133 (133)
T d1q1ra2 101 CGFEMSTDQQKVTAVLCEDGT--------RLPADLVIAGIG 133 (133)
T ss_dssp EEEEECTTTCCEEEEEETTSC--------EEECSEEEECCC
T ss_pred EEEEEeCCCceEEEEECCCCC--------EEECCEEEEeeC
Confidence 777643 3344434456776 899999999998
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.12 E-value=6.2e-12 Score=109.52 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..|||+||||||||++||.++++.|.+|+|||+++.++
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G 39 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG 39 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 46999999999999999999999999999999987653
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=3.3e-11 Score=93.17 Aligned_cols=93 Identities=16% Similarity=0.306 Sum_probs=63.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+|||+.+.+. +. .+ ..+.+......+..+++++.+ +|+
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il-----~~-----~d-----~~~~~~l~~~l~~~gV~i~~~~~V~ 86 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL-----PT-----YD-----SELTAPVAESLKKLGIALHLGHSVE 86 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----TT-----SC-----HHHHHHHHHHHHHHTCEEETTCEEE
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc-----cc-----cc-----chhHHHHHHHHHhhcceEEcCcEEE
Confidence 689999999999999999999999999999987632 11 01 112222222344567888776 788
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.++. +...+.. .++. +.++.+|.||+|+|
T Consensus 87 ~i~~--~~~~~~~-~~~~------~~~i~~D~vi~A~G 115 (115)
T d1lvla2 87 GYEN--GCLLAND-GKGG------QLRLEADRVLVAVG 115 (115)
T ss_dssp EEET--TEEEEEC-SSSC------CCEECCSCEEECCC
T ss_pred EEcC--CeEEEEE-cCCC------eEEEEcCEEEEecC
Confidence 8863 2333322 2222 12799999999998
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.9e-11 Score=93.50 Aligned_cols=89 Identities=22% Similarity=0.272 Sum_probs=71.0
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VK 307 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~ 307 (436)
++++|+|||+|++|+|.|..|++++ .+|++++|.+-++. ++...+.+.+.....+|.++.++ +.
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFRA-EKILIKRLMDKVENGNIILHTNRTLE 90 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCC-CHHHHHHHHHHHHTSSEEEECSCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcC--------------CcEEEEeecccccc-hhHHHHHHHHhhcccceeEecceEEE
Confidence 3459999999999999999999877 99999999765543 56667777777778899999885 88
Q ss_pred EEeCC-----eEEEcCC------cEEecceEEEecC
Q 013810 308 DVDSQ-----KLILNDG------TEVPYGLLVWSTG 332 (436)
Q Consensus 308 ~i~~~-----~v~~~~g------~~i~~D~vi~a~G 332 (436)
++.++ +|++.|. +++++|.|++++|
T Consensus 91 ~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 91 EVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred EEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 88653 3555442 3599999999987
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.10 E-value=1.8e-11 Score=107.24 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=62.1
Q ss_pred CcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEeEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (436)
+||+|||||||||+||.+|++ .|++|+|||+.+.++..... +..........+...........++.++....
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF-----GVAPDHPEVKNVINTFTQTARSDRCAFYGNVE 76 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH-----TSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCC
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh-----hccccccccccchhhhhhhhhcCCeeEEeeEE
Confidence 589999999999999999976 47899999999875432111 11111111122222223334556777665432
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCC-CCCCCCC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS-TFGIHGV 190 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~-~~~i~g~ 190 (436)
...| +.. . +..-.||++++|||+.+. .+.+++.
T Consensus 77 v~~~-----~~~------~------~l~~~~d~v~~a~Ga~~~~~~~~~~~ 110 (230)
T d1cjca2 77 VGRD-----VTV------Q------ELQDAYHAVVLSYGAEDKSRPIDPSV 110 (230)
T ss_dssp BTTT-----BCH------H------HHHHHSSEEEECCCCCEECCCCCTTS
T ss_pred eCcc-----ccH------H------HHHhhhceEEEEeecccccccccccc
Confidence 2111 100 0 002369999999999753 3455554
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.09 E-value=2.4e-10 Score=97.13 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=99.3
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCCC----------cccHHHHHHHHHHHHhcC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILS----------SFDDRLRHYATTQLSKSG 298 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l~----------~~~~~~~~~~~~~l~~~g 298 (436)
++||+|||||++|+++|..|++.| . +|+++++.+.+. .................+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G--------------~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLG--------------YSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLG 69 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTT
T ss_pred CCEEEEECChHHHHHHHHHHHHCC--------------CCeEEEEEecCcccchhhhhccccccccccccchhhhhhccc
Confidence 359999999999999999999876 5 699999965432 123444444455555667
Q ss_pred CEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCch----h-cccCCCCCCCCCcEEeCCC-CCCCCCCCEEEecc
Q 013810 299 VRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPST----L-VKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGD 371 (436)
Q Consensus 299 V~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~----~-~~~~~l~~~~~G~i~vd~~-~~~t~~~~Vya~GD 371 (436)
.++.... +. .......+..+..+|.+++++|..... . ...........+....+.. ++ ++.+.||++||
T Consensus 70 ~~~~~~~~v~---~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~g~ 145 (196)
T d1gtea4 70 VKIICGKSLS---ENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQ-TSEPWVFAGGD 145 (196)
T ss_dssp CEEEESCCBS---TTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCB-CSSTTEEECSG
T ss_pred eeEEeeEEec---cceeeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccC-CCccccccccc
Confidence 7776653 31 111122223345689999999965431 1 1112223344455555544 66 89999999999
Q ss_pred ccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 372 CSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
+.+. ..++..|..+|+.+|..+..
T Consensus 146 vigg---------~~~av~a~~~g~~~a~~v~r 169 (196)
T d1gtea4 146 IVGM---------ANTTVESVNDGKQASWYIHK 169 (196)
T ss_dssp GGCS---------CCCHHHHHHHHHHHHHHHHH
T ss_pred ccCC---------cchHHHHHHHHhhhehhHhh
Confidence 9986 67888899999999887764
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.05 E-value=3.6e-10 Score=87.50 Aligned_cols=93 Identities=17% Similarity=0.235 Sum_probs=66.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+|||+.+.+. + + .+ ..+.+......+..++.++.+ +|+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il-----~----~-~d-----~~~~~~l~~~l~~~GI~i~~~~~v~ 87 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-----S----G-FE-----KQMAAIIKKRLKKKGVEVVTNALAK 87 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS-----T----T-SC-----HHHHHHHHHHHHHTTCEEEESEEEE
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecceec-----c----c-cc-----chhHHHHHHHHHhcCCEEEcCCEEE
Confidence 689999999999999999999999999999987631 1 1 11 122222233345578998876 888
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEE
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVI 176 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lVi 176 (436)
.++...+.+.+....+|+ ++++.+|.|++
T Consensus 88 ~i~~~~~~~~v~~~~~g~------~~~i~~D~Vlv 116 (117)
T d1ebda2 88 GAEEREDGVTVTYEANGE------TKTIDADYVLV 116 (117)
T ss_dssp EEEEETTEEEEEEEETTE------EEEEEESEEEE
T ss_pred EEEEcCCEEEEEEEeCCC------EEEEEeEEEEE
Confidence 888766665554444553 23789999987
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.3e-10 Score=91.01 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCCCCCCCcc---ccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHHHHHHh
Q 013810 183 STFGIHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (436)
Q Consensus 183 ~~~~i~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~ 259 (436)
+.+++||.++ ...+++..+|+.. .++++|+|||+|++|+|.|.+|+++.
T Consensus 2 R~L~ipge~~~~gkGV~yca~cD~~~----------------------~~gk~V~VvGgG~sA~~~A~~L~~~a------ 53 (126)
T d1fl2a2 2 RNMNVPGEDQYRTKGVTYCPHCDGPL----------------------FKGKRVAVIGGGNSGVEAAIDLAGIV------ 53 (126)
T ss_dssp CCCCCTTTTTTBTTTEESCHHHHGGG----------------------GBTCEEEEECCSHHHHHHHHHHHTTB------
T ss_pred CcCCCCCHHHhcCCCEEEEEecChhh----------------------cCCceEEEEeCCHHHHHHHHhhhccC------
Confidence 5678888763 3344444444433 34459999999999999999999876
Q ss_pred hhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eEEEeCC-----eEEEcC---C--cEEecceEE
Q 013810 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VKDVDSQ-----KLILND---G--TEVPYGLLV 328 (436)
Q Consensus 260 ~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~~-----~v~~~~---g--~~i~~D~vi 328 (436)
.+|+|++|.+.+.. .+.. ..+.....+|++++++ +.++.++ ++++.+ | +++++|.++
T Consensus 54 --------~~V~li~r~~~~~~-~~~~---~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvF 121 (126)
T d1fl2a2 54 --------EHVTLLEFAPEMKA-DQVL---QDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF 121 (126)
T ss_dssp --------SEEEEECSSSSCCS-CHHH---HHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred --------CceEEEeccccccc-cccc---ccccccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEE
Confidence 89999999765543 2222 2223334579999995 8888753 255543 4 369999999
Q ss_pred EecCC
Q 013810 329 WSTGV 333 (436)
Q Consensus 329 ~a~G~ 333 (436)
+++|.
T Consensus 122 v~IGl 126 (126)
T d1fl2a2 122 VQIGL 126 (126)
T ss_dssp ECSCE
T ss_pred EEeCC
Confidence 99984
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.03 E-value=2.5e-10 Score=88.40 Aligned_cols=94 Identities=13% Similarity=0.195 Sum_probs=64.9
Q ss_pred CcEEEECCchHHHHHHHhcc---cCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 63 PRVVVLGSGWAGCRLMKGID---TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~---~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
++++|||||+.|+.+|..|+ +.|.+|+++|+.+.+. + + .+ ..+........+..++.++.+
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-----~----~-~d-----~~~~~~~~~~l~~~GI~v~~~~ 83 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-----R----G-FD-----SELRKQLTEQLRANGINVRTHE 83 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-----T----T-SC-----HHHHHHHHHHHHHTTEEEEETC
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-----c----c-cc-----chhhHHHHHHHhhCcEEEEcCC
Confidence 68999999999999997654 4688999999986621 1 1 01 122233333355678998876
Q ss_pred EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+|+.++...+.+......+|. .+++|.||+|||
T Consensus 84 ~v~~i~~~~~g~~~v~~~~g~--------~i~~D~Vi~a~G 116 (117)
T d1feca2 84 NPAKVTKNADGTRHVVFESGA--------EADYDVVMLAIG 116 (117)
T ss_dssp CEEEEEECTTSCEEEEETTSC--------EEEESEEEECSC
T ss_pred EEEEEEECCCCEEEEEECCCC--------EEEcCEEEEecC
Confidence 788887544332222345776 899999999999
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.03 E-value=3e-10 Score=95.60 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=69.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEE--EEcCCCcceec-chhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVV--CVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~--lie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
+.+|+|||||++|+.+|..|++.|.+++ +++++....|. +.+.......... ...........++.++.+
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~ 75 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDA-------EKIRLDCKRAPEVEWLLG 75 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCG-------GGSBCCGGGSTTCEEEET
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhh-------hhHHHHHhhcCCeEEEEe
Confidence 3569999999999999999999887754 44444443332 2222111111111 111122234567888775
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCC
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~ 185 (436)
++..++.+...+.+. +|+ ++.||.+|+|+|..|+..
T Consensus 76 ~~v~~i~~~~~~~~~~---~g~--------~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 76 VTAQSFDPQAHTVALS---DGR--------TLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp CCEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEECCE
T ss_pred ccccccccccceeEec---CCc--------EeeeeeEEEEEEEEcccc
Confidence 788899888877653 676 899999999999987653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.03 E-value=5.1e-10 Score=87.33 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+.+. +.. . ...+........+..++.++.+ ++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l-----~~~----~-----d~~~~~~~~~~l~~~gv~~~~~~~v 95 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL-----GVY----L-----DKEFTDVLTEEMEANNITIATGETV 95 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT-----TTT----C-----CHHHHHHHHHHHHTTTEEEEESCCE
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc-----ccc----c-----chhhHHHHHHHhhcCCeEEEeCceE
Confidence 3689999999999999999999999999999987621 111 0 1122233333455678998886 78
Q ss_pred EeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 141 ~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
..++.+.+...+. .+|+ ++++|.||+|.
T Consensus 96 ~~i~~~~~~~~v~--~dg~--------~i~~D~vi~aI 123 (123)
T d1nhpa2 96 ERYEGDGRVQKVV--TDKN--------AYDADLVVVAV 123 (123)
T ss_dssp EEEECSSBCCEEE--ESSC--------EEECSEEEECS
T ss_pred EEEEcCCCEEEEE--eCCC--------EEECCEEEEEC
Confidence 8887654432222 3676 89999999983
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=4.9e-10 Score=87.76 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=66.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. + + .+ ..+.+......+..++.++.+ +++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l-----~----~-~d-----~~~~~~~~~~l~~~Gv~i~~~~~v~ 87 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL-----R----S-FD-----SMISTNCTEELENAGVEVLKFSQVK 87 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC-----T----T-SC-----HHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccc-----c----c-hh-----hHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 689999999999999999999999999999987631 1 1 01 112222223345578888775 778
Q ss_pred eEeCCCCEEEE--EEecCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~~~~~v~~--~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.++.....+.+ .....|.. ......+.+|+|++|+|
T Consensus 88 ~i~~~~~g~~v~~~~~~~g~~--~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 88 EVKKTLSGLEVSMVTAVPGRL--PVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEEETTEEEEEEEECCTTSC--CEEEEEEEESEEEECSC
T ss_pred EEEEcCCeEEEEEEEccCCcC--cCccccccCCEEEEEeC
Confidence 88765554433 22223321 00112568999999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.00 E-value=1.4e-10 Score=98.49 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=69.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecch--hh-----hhhcCcccccccccchhhcchhhhcCCCcE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL--LA-----STCVGTLEFRSVAEPIARIQPAISREPGSY 134 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (436)
++||+||||||||++||++|+|.|++|+|+|+.......+. +. ....+.+.... ...+...........++.
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~el~~~~~~q~~~~g~~ 83 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGIL-GVELTDKFRKQSERFGTT 83 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEE-HHHHHHHHHHHHHHTTCE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhcccccccccc-chHHHHHHHHHHHhhcce
Confidence 58999999999999999999999999999997654322211 00 00111111100 111111111122346788
Q ss_pred EEEeEeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCC
Q 013810 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE 181 (436)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~ 181 (436)
+...+|..++...+.+.+.+ +.. .+.+|.+++|+|..
T Consensus 84 i~~~~V~~~~~~~~~~~v~~--~~~--------~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 84 IFTETVTKVDFSSKPFKLFT--DSK--------AILADAVILAIGAV 120 (192)
T ss_dssp EECCCCCEEECSSSSEEEEC--SSE--------EEEEEEEEECCCEE
T ss_pred eeeeeEEecccccCcEEecc--cce--------eeeeeeEEEEeeee
Confidence 88888999988777665542 333 78899999999964
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.98 E-value=2.8e-10 Score=102.64 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|||||||||++|+++|++|+++|++|+|||+.+
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 57999999999999999999999999999999864
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.97 E-value=1e-10 Score=101.68 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++||+||||||||++||.++++.|.+|+|||++.
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~ 38 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA 38 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 45899999999999999999999999999999864
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=8.8e-10 Score=87.79 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=68.3
Q ss_pred CcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe
Q 013810 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (436)
++++|||||+.|+.+|..|++ .|.+|++|++++.... .. . ...+........+..++.++.+
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-----~~----~-----~~~~~~~~~~~l~~~GV~~~~~ 103 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----KI----L-----PEYLSNWTMEKVRREGVKVMPN 103 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----TT----S-----CHHHHHHHHHHHHTTTCEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-----cc----C-----CHHHHHHHHHHHHhCCcEEEeC
Confidence 689999999999999998853 6899999999876321 00 0 1122222333355678999886
Q ss_pred -EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 139 -HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 139 -~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.|..++.+++.+.+. ..+|+ ++.+|.+|+|+|
T Consensus 104 ~~V~~i~~~~~~~~v~-l~~G~--------~i~aD~Vi~A~G 136 (137)
T d1m6ia2 104 AIVQSVGVSSGKLLIK-LKDGR--------KVETDHIVAAVG 136 (137)
T ss_dssp CCEEEEEEETTEEEEE-ETTSC--------EEEESEEEECCC
T ss_pred CEEEEEEecCCEEEEE-ECCCC--------EEECCEEEEeec
Confidence 788888777766654 35776 899999999999
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.95 E-value=9.9e-10 Score=85.70 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=66.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..+++.|.+|+|+|+.+.+. + . .+ ..+........+..++.++.+ ++.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il-----~----~-~d-----~~~~~~l~~~l~~~gv~~~~~~~v~ 91 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM-----Q----G-AD-----RDLVKVWQKQNEYRFDNIMVNTKTV 91 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----T----T-SC-----HHHHHHHHHHHGGGEEEEECSCEEE
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc-----c----c-ch-----hhHHHHHHHHHHHcCcccccCcEEE
Confidence 689999999999999999999999999999987521 1 0 11 122222233345567877765 778
Q ss_pred eEeCCCCEEEEEEe-cCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~~~~~v~~~~~-~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.+..+.+.+.+... .++. .+++++|+|++|+|
T Consensus 92 ~v~~~~~g~~v~~~~~~g~------~~~i~~D~vl~A~G 124 (125)
T d1ojta2 92 AVEPKEDGVYVTFEGANAP------KEPQRYDAVLVAAG 124 (125)
T ss_dssp EEEEETTEEEEEEESSSCC------SSCEEESCEEECCC
T ss_pred EEEEcCCcEEEEEEeCCCC------eEEEEcCEEEEecC
Confidence 88766655444322 2222 12789999999999
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.95 E-value=1.1e-09 Score=84.47 Aligned_cols=92 Identities=12% Similarity=0.212 Sum_probs=63.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++|+|||||+.|+.+|..|++.|.+|+||++.+.+. . . . ...+.+......+..++.++.+ +|+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il-----~----~-~-----d~~~~~~~~~~l~~~gV~i~~~~~v~ 87 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL-----R----K-F-----DESVINVLENDMKKNNINIVTFADVV 87 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC-----T----T-S-----CHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcccc-----c----c-c-----cHHHHHHHHHHHHhCCCEEEECCEEE
Confidence 689999999999999999999999999999987631 0 0 0 1122222233344568998876 788
Q ss_pred eEeCC-CCEEEEEEecCCcccCCCCceee-eccEEEEeC
Q 013810 142 GIDTD-NHVVHCETVTDELRTLEPWKFKI-SYDKLVIAL 178 (436)
Q Consensus 142 ~id~~-~~~v~~~~~~~g~~~~~~~~~~~-~~d~lViAt 178 (436)
.++.. ++.+.+. ..+|+ .+ .||.||+|.
T Consensus 88 ~i~~~~~~~~~v~-~~~G~--------~~~~~D~Vi~AI 117 (117)
T d1onfa2 88 EIKKVSDKNLSIH-LSDGR--------IYEHFDHVIYCV 117 (117)
T ss_dssp EEEESSTTCEEEE-ETTSC--------EEEEESEEEECC
T ss_pred EEEEcCCCeEEEE-ECCCC--------EEEeCCEEEEeC
Confidence 88743 3344443 34665 55 589999983
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.94 E-value=1.1e-09 Score=85.27 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=63.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||+.|+.+|..|++.|.+|++|++.+.+. .+. + ..+.+......+..++.++.+ ++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l---------~~~-d-----~~~~~~~~~~l~~~gI~v~~~~~v 86 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK---------LIK-D-----NETRAYVLDRMKEQGMEIISGSNV 86 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT---------TCC-S-----HHHHHHHHHHHHHTTCEEESSCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh---------ccc-c-----cchhhhhhhhhhccccEEEcCCEE
Confidence 3789999999999999999999999999999986521 110 0 011222222344567888775 77
Q ss_pred EeEeCCCC-EE-EEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 141 AGIDTDNH-VV-HCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 141 ~~id~~~~-~v-~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
+.++...+ .+ .+.....+. ++.+++|++|+|+|
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~------~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 87 TRIEEDANGRVQAVVAMTPNG------EMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEECTTSBEEEEEEEETTE------EEEEECSCEEECCC
T ss_pred EEEEecCCceEEEEEEEeCCC------CEEEEcCEEEEEEC
Confidence 78876542 21 121111221 12799999999998
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.94 E-value=3e-10 Score=102.08 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++||+|||||++|+++|++|+++|.+|+|||+.+
T Consensus 3 ~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35799999999999999999999999999999864
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.93 E-value=2.9e-08 Score=91.46 Aligned_cols=119 Identities=10% Similarity=-0.015 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCEEEecc-eEEE--eCCe---EEE---cCCc--EEecceEEEecCCCCch----------------
Q 013810 285 RLRHYATTQLSKSGVRLVRGI-VKDV--DSQK---LIL---NDGT--EVPYGLLVWSTGVGPST---------------- 337 (436)
Q Consensus 285 ~~~~~~~~~l~~~gV~i~~~~-v~~i--~~~~---v~~---~~g~--~i~~D~vi~a~G~~p~~---------------- 337 (436)
.+...+.+...+.||+++.++ +.++ +++. +.. .+|+ ++.++.||+|+|--..-
T Consensus 159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~ 238 (336)
T d2bs2a2 159 TMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTA 238 (336)
T ss_dssp HHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHH
T ss_pred HHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhh
Confidence 334445556667899998884 4443 2332 222 3564 47899999998843210
Q ss_pred hcccCC-CCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 338 LVKSLD-LPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 338 ~~~~~~-l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
.....| .++.+-++|.+|+..+ |+.+++|++||+.....+...+.-..+...++..+..+++.+..
T Consensus 239 ~~~~~G~~~l~~~~~iq~~~~~~-t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~ 305 (336)
T d2bs2a2 239 IALETGIAQLGNMGGIRTDYRGE-AKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE 305 (336)
T ss_dssp HHHTTSSSCEECCCEEECCTTSB-CSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccceeechhhc-ccCCcceeccccccccccccccchhhccchhhhhcchhHHHHHh
Confidence 112234 2345678899999999 89999999999876422211222234556677777777776654
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.93 E-value=6.6e-10 Score=86.62 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=63.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+|||+.+.+. + . ...+.+......+..++.++.+ ++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~----------~-~-----d~~~~~~~~~~l~~~GV~~~~~~~v~ 96 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL----------G-L-----DEELSNMIKDMLEETGVKFFLNSELL 96 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT----------T-C-----CHHHHHHHHHHHHHTTEEEECSCCEE
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc----------C-C-----CHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 689999999999999999999999999999987631 0 0 0112222222344568998876 677
Q ss_pred eEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCC
Q 013810 142 GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (436)
Q Consensus 142 ~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~ 180 (436)
.++.+ .+. .+++ .+++|.+|+|+|.
T Consensus 97 ~~~~~--~v~----~~~~--------~i~~D~vi~a~Gv 121 (122)
T d1xhca2 97 EANEE--GVL----TNSG--------FIEGKVKICAIGI 121 (122)
T ss_dssp EECSS--EEE----ETTE--------EEECSCEEEECCE
T ss_pred EEeCC--EEE----eCCC--------EEECCEEEEEEEe
Confidence 76543 332 2555 8999999999994
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.91 E-value=2e-09 Score=95.71 Aligned_cols=129 Identities=26% Similarity=0.360 Sum_probs=83.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-------------------------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------- 280 (436)
.++|||+|+.|+.+|..+++.+ .+|.|+++..+..
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G--------------~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~ 68 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHN--------------AKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGF 68 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTC
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccc
Confidence 5899999999999999999987 9999999854310
Q ss_pred ----ccc------------HHHHHHHHHHHHhcCCEEEecc--eEEEeCCeE-----------EEcCCcEEecceEEEec
Q 013810 281 ----SFD------------DRLRHYATTQLSKSGVRLVRGI--VKDVDSQKL-----------ILNDGTEVPYGLLVWST 331 (436)
Q Consensus 281 ----~~~------------~~~~~~~~~~l~~~gV~i~~~~--v~~i~~~~v-----------~~~~g~~i~~D~vi~a~ 331 (436)
.++ ..+.+.+...+++.||+++.++ +.+...-.| ...+++++.+|.|++||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIAT 148 (259)
T d1onfa1 69 DTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAV 148 (259)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECC
T ss_pred cchhhhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEec
Confidence 000 1112223456778899999873 221111000 11234569999999999
Q ss_pred CCCCc---hhcccCCCC----CCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 332 GVGPS---TLVKSLDLP----KSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 332 G~~p~---~~~~~~~l~----~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
|.+|. .....++++ .+.++++.+|+..+ +.+.++|++||++..
T Consensus 149 Gs~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~~-t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 149 GNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQR-TSVNNIYAVGDCCMV 198 (259)
T ss_dssp CCCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTCB-CSSSSEEECSTTEEE
T ss_pred CCCCccccccccccccccceeeecccccccccCCc-eeEeeEEEEEEeeeh
Confidence 99993 112222222 24467899998888 799999999999874
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=98.90 E-value=1.1e-08 Score=90.10 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=106.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC---------------cc--------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS---------------SF-------------- 282 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~---------------~~-------------- 282 (436)
.|+|||+|++|+-+|..|++.+ .+|+|+++.+... ..
T Consensus 4 DViIIGaG~aGl~aA~~la~~G--------------~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEG--------------ANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGR 69 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGG
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchh
Confidence 6999999999999999999876 8999998743110 00
Q ss_pred ---------------------------------------cHHHHHHHHHHHHhcCCEEEecc-eEEEe--CC---eEEEc
Q 013810 283 ---------------------------------------DDRLRHYATTQLSKSGVRLVRGI-VKDVD--SQ---KLILN 317 (436)
Q Consensus 283 ---------------------------------------~~~~~~~~~~~l~~~gV~i~~~~-v~~i~--~~---~v~~~ 317 (436)
...+.+.+.+.+++.||+++.++ |+++. ++ .|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~ 149 (251)
T d2i0za1 70 FLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ 149 (251)
T ss_dssp GGHHHHHHSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET
T ss_pred hhhhhhhhhhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeC
Confidence 01233445566778899999985 87774 33 36778
Q ss_pred CCcEEecceEEEecCCCCc----------hhcccCCCCCCCC--CcEEeC----CCCCCCCCCCEEEeccccccccCCCC
Q 013810 318 DGTEVPYGLLVWSTGVGPS----------TLVKSLDLPKSPG--GRIGID----EWLRVPSVQDVFAVGDCSGYLESTGK 381 (436)
Q Consensus 318 ~g~~i~~D~vi~a~G~~p~----------~~~~~~~l~~~~~--G~i~vd----~~~~~t~~~~Vya~GD~~~~~~~~~~ 381 (436)
+|+++.+|.||+|+|-... .+++..+.++.+- +.+.++ ..+..+..|++|++|++.......|.
T Consensus 150 ~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG 229 (251)
T d2i0za1 150 TGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG 229 (251)
T ss_dssp TCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT
T ss_pred CCCeEecCeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch
Confidence 9999999999999996542 1455556554321 112221 22333678999999999865433332
Q ss_pred ccCCccHHHHHHHHHHHHhhhhhh
Q 013810 382 TVLPALAQVSYEQLHLFQKPSFLL 405 (436)
Q Consensus 382 ~~~~~~~~~A~~~g~~aa~~i~~~ 405 (436)
.....|...|+.|+..+...
T Consensus 230 ----~~~~~a~~~G~~a~~~~~~~ 249 (251)
T d2i0za1 230 ----YNITSALVTGRIAGTTAGEN 249 (251)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHh
Confidence 24578889999999887654
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.87 E-value=6.1e-10 Score=99.32 Aligned_cols=38 Identities=13% Similarity=0.001 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcce
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~ 98 (436)
..+||+||||||||+.||..+++.|.+|++||+.+.+.
T Consensus 41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG 78 (261)
T d1mo9a1 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78 (261)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence 46899999999999999999999999999999987654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.87 E-value=1.4e-09 Score=96.80 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..||+|||||||||+||..|++.|++|+|||+++.
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 47899999999999999999999999999998754
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.87 E-value=9.3e-10 Score=100.10 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=32.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
+||+|||||+|||+||.+|++.|++|+|+|+++.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 47999999999999999999999999999998654
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.86 E-value=1.5e-09 Score=91.12 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=65.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC--cceec--chhhhhhcCcccccccccchhhcchhhhcCCCcEEEE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--HMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (436)
..+|||||||++|+.+|..|++.|.+++|++..+ ...+. +.......+...... ...............+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 78 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES----LYLRTPDAYAAQNIQLLG 78 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGG----GBSSCHHHHHHTTEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhh----hhhhhhhhhcccceeeec
Confidence 4789999999999999999999998866665443 32222 111111111111111 111111112223334433
Q ss_pred e-EeEeEeCCCCEEEEEEecCCcccCCCCceeeeccEEEEeCCCCCCCCCC
Q 013810 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (436)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG~~~~~~~i 187 (436)
. .+..++.+...+... ++. ++.+|.+++++|..|..|.+
T Consensus 79 ~~~~~~~~~~~~~v~~~---~~~--------~i~~d~~i~~~G~~~~~~~~ 118 (185)
T d1q1ra1 79 GTQVTAINRDRQQVILS---DGR--------ALDYDRLVLATGGRPLIPNC 118 (185)
T ss_dssp SCCEEEEETTTTEEEET---TSC--------EEECSEEEECCCEEEEEECC
T ss_pred cceeeeecccccEEEee---cee--------EEEeeeeeeeeecccCCCCc
Confidence 3 556667666666542 454 89999999999998766554
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=2.6e-09 Score=83.01 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=62.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+||++++. +. . ....+.+......+..+++++.+ .|+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~------l~----~------~D~~~~~~l~~~l~~~Gv~i~~~~~v~ 84 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSIL------LR----G------FDQDMANKIGEHMEEHGIKFIRQFVPT 84 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS------ST----T------SCHHHHHHHHHHHHHTTEEEEESCEEE
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEechh------hc----c------CCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence 6899999999999999999999999999987532 11 0 01123333333455678999876 566
Q ss_pred eEeC----CCCEEEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 142 GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 142 ~id~----~~~~v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
.+.. ....+.+.....+.. +...+.+|.|++|+|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 85 KIEQIEAGTPGRLKVTAKSTNSE----ETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECSTTCEEEEEEECTTSC----EEEEEEESEEECCCC
T ss_pred EEEEecCCCccEEEEEEEECCCC----cEEEEECCEEEEEeC
Confidence 5542 223333322222210 012567999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.85 E-value=4.3e-09 Score=81.19 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=62.6
Q ss_pred CcEEEECCchHHHHHHHhcc---cCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-
Q 013810 63 PRVVVLGSGWAGCRLMKGID---TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS- 138 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~---~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (436)
++++|||||+.|+.+|..|. +.+.+|+|||+.+.+. + + . ...+........+..++.++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-----~----~-~-----d~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-----R----G-F-----DHTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-----T----T-S-----CHHHHHHHHHHHHHTTCEEEESC
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-----c----c-c-----chHHHHHHHHHHHhcCcEEEcCC
Confidence 68999999999999997655 4567899999987621 1 1 0 0122222233345578999887
Q ss_pred EeEeEeCCC-CEEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 139 HCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 139 ~v~~id~~~-~~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
++++++... +.+.+ ..++|+ ++++|.||+|.
T Consensus 86 ~v~~ie~~~~~~~~v-~~~~G~--------~i~~D~Vi~AI 117 (117)
T d1aoga2 86 NPAKVELNADGSKSV-TFESGK--------KMDFDLVMMAI 117 (117)
T ss_dssp CEEEEEECTTSCEEE-EETTSC--------EEEESEEEECS
T ss_pred EEEEEEEcCCCeEEE-EECCCc--------EEEeCEEEEeC
Confidence 788887543 33433 345776 89999999983
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=5.6e-10 Score=97.81 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.|||+||||||||++||+++++.|++|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 58999999999999999999999999999997643
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.84 E-value=2.4e-09 Score=83.80 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=63.4
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecc-eE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGI-VK 307 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~-v~ 307 (436)
++|+|+|||+|++|+|.|.+|+.+. .+|+|++|.+.++. .+.. +.+.+...+|++++++ +.
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a--------------~~V~li~r~~~~ra-~~~~---~~~l~~~~nI~v~~~~~v~ 94 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDAFRA-SKIM---QQRALSNPKIDVIWNSSVV 94 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS--------------SEEEEECSSSSCCS-CHHH---HHHHHTCTTEEEECSEEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCC--------------CcEEEEEecccccc-chhh---hhccccCCceEEEeccEEE
Confidence 3459999999999999999999877 99999999766654 2222 2334455679999995 88
Q ss_pred EEeCC-------eEEEc---CC--cEEecceEEEec
Q 013810 308 DVDSQ-------KLILN---DG--TEVPYGLLVWST 331 (436)
Q Consensus 308 ~i~~~-------~v~~~---~g--~~i~~D~vi~a~ 331 (436)
++.++ .+.+. ++ +++++|.|++++
T Consensus 95 ~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 95 EAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 88653 24443 23 479999999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=5.2e-09 Score=81.25 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=62.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..|++.|.+|+|||+.+.+. + . .+ ..+........+..+++++.+ +|.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l-----~----~-~d-----~ei~~~l~~~l~~~GV~i~~~~~v~ 88 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG-----A----S-MD-----GEVAKATQKFLKKQGLDFKLSTKVI 88 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS-----S----S-SC-----HHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc-----h----h-hh-----hhhHHHHHHHHHhccceEEeCCEEE
Confidence 689999999999999999999999999999987631 1 0 11 122222233344568888776 777
Q ss_pred eEeCCC--CEEEEEEecCCcccCCCCceeeeccEEEEe
Q 013810 142 GIDTDN--HVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (436)
Q Consensus 142 ~id~~~--~~v~~~~~~~g~~~~~~~~~~~~~d~lViA 177 (436)
+++... ..+.+... ++.. ...+++++|+|++|
T Consensus 89 ~v~~~~~~~~v~~~~~-~~~~---~~~~~ie~D~vlvA 122 (122)
T d1v59a2 89 SAKRNDDKNVVEIVVE-DTKT---NKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEETTTTEEEEEEE-ETTT---TEEEEEEESEEEEC
T ss_pred EEEEeCCCcEEEEEEE-eCCC---CCeEEEEeCEEEEC
Confidence 776532 23333221 2110 01237899999987
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.82 E-value=7.3e-10 Score=96.09 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++||+||||||||++||.++++.|.+|+|||+..
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 5899999999999999999999999999999865
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.1e-08 Score=82.94 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=65.9
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC----------C--cccHHHHHHHHHHHH
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----------S--SFDDRLRHYATTQLS 295 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l----------~--~~~~~~~~~~~~~l~ 295 (436)
..+++|+|||+|+.|++.|..|++.+ .+|+|+++.+.+ + ....++.+++.+.++
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G--------------~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~ 106 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARG--------------HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIE 106 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhc--------------cceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhh
Confidence 44569999999999999999999876 999999996422 1 122456677888889
Q ss_pred hcCCEEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 296 KSGVRLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+.||++++++ |+. + ....+|.||+|+|..|.
T Consensus 107 ~~gV~i~l~~~Vt~---------~-~~~~~d~vilAtG~~~~ 138 (179)
T d1ps9a3 107 VTGVTLKLNHTVTA---------D-QLQAFDETILASGIPNR 138 (179)
T ss_dssp HHTCEEEESCCCCS---------S-SSCCSSEEEECCCEECC
T ss_pred cCCeEEEeCCEEcc---------c-ccccceeEEEeecCCCc
Confidence 9999999985 431 1 23568999999998776
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=1.5e-09 Score=98.18 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+.+|+||||||+||++|..|++.|++|+|||+.+
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999975
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.4e-09 Score=94.18 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.|||+||||||||++||.++++.|.+|+|||++..
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~ 37 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHKL 37 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence 48999999999999999999999999999998653
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.79 E-value=4.1e-09 Score=96.01 Aligned_cols=78 Identities=5% Similarity=0.020 Sum_probs=51.5
Q ss_pred CcEEecceEEEecCCCCch-h--c-ccCCCCC---------CCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCC
Q 013810 319 GTEVPYGLLVWSTGVGPST-L--V-KSLDLPK---------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP 385 (436)
Q Consensus 319 g~~i~~D~vi~a~G~~p~~-~--~-~~~~l~~---------~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~ 385 (436)
++.+++|.||++++...-. + . ....+.. +.++.+.+++.++ |+.|+||++||+.+.
T Consensus 280 ~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~pglf~aGd~~~g---------- 348 (373)
T d1seza1 280 SEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKME-KNLPGLFYAGNHRGG---------- 348 (373)
T ss_dssp BCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTHHHHHHHHHHHH-HHSTTEEECCSSSSC----------
T ss_pred ceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCCCcEeecccccC-CCCCCEEEEecCCCc----------
Confidence 4568999999998743210 0 0 0000000 1112233445567 789999999999874
Q ss_pred ccHHHHHHHHHHHHhhhhhhcC
Q 013810 386 ALAQVSYEQLHLFQKPSFLLAR 407 (436)
Q Consensus 386 ~~~~~A~~~g~~aa~~i~~~~~ 407 (436)
..+..|+.+|+.||+.|..+..
T Consensus 349 ~~~~~A~~~G~~aA~~i~~~L~ 370 (373)
T d1seza1 349 LSVGKALSSGCNAADLVISYLE 370 (373)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999987654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.77 E-value=5.4e-09 Score=95.10 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
.||+|||||.+|+++|++|+++|. +|+|||+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 489999999999999999999996 699999874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.77 E-value=7.3e-09 Score=80.58 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=65.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-EeE
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HCA 141 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~ 141 (436)
++++|||||+.|+.+|..+++.|.+|+|+++.+.+. + + .+ ..+........+..++.++.+ ++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l-----~----~-~d-----~~~~~~l~~~l~~~GI~i~~~~~v~ 90 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV-----P----T-MD-----AEIRKQFQRSLEKQGMKFKLKTKVV 90 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS-----T----T-SC-----HHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC-----c----h-hh-----hcchhhhhhhhhcccceEEcCCceE
Confidence 689999999999999999999999999999987631 1 0 01 112222222344567888875 788
Q ss_pred eEeCCCCEEE--EEEecCCcccCCCCceeeeccEEEEeC
Q 013810 142 GIDTDNHVVH--CETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 142 ~id~~~~~v~--~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
+++..++.+. +....+|+ ++.+.+|+|++|.
T Consensus 91 ~i~~~~~~~~v~~~~~~~g~------~~~i~~D~vLvAA 123 (123)
T d1dxla2 91 GVDTSGDGVKLTVEPSAGGE------QTIIEADVVLVSA 123 (123)
T ss_dssp EEECSSSSEEEEEEESSSCC------CEEEEESEEECCC
T ss_pred EEEEccCeEEEEEEECCCCe------EEEEEcCEEEEcC
Confidence 8886555443 33333443 2368999999984
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.76 E-value=6.3e-10 Score=94.46 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=33.8
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCcce
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMV 98 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~~~ 98 (436)
++||+||||||+||+||.+|++.|++ |+|||+.+...
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~g 41 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCccc
Confidence 47999999999999999999999995 99999988754
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.68 E-value=1.3e-08 Score=92.69 Aligned_cols=36 Identities=28% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.+||+|||||+|||+||+.|++.|.+|+||||.+..
T Consensus 16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~ 51 (308)
T d1y0pa2 16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI 51 (308)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999997653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.65 E-value=1e-08 Score=89.40 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.9
Q ss_pred ceEEEeCCeEEEcCCcEEecceEEEecCC
Q 013810 305 IVKDVDSQKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 305 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
.|.++++++|+++|| ++++|+||+|||+
T Consensus 208 ~I~~~~~~gV~~~dg-~~~~D~VV~ATGf 235 (235)
T d1w4xa2 208 PIETITPRGVRTSER-EYELDSLVLATGF 235 (235)
T ss_dssp CEEEECSSEEEESSC-EEECSEEEECCCC
T ss_pred CCeEEeCCeEEECCC-EEcCCEEEeCCCC
Confidence 478888999999988 5899999999996
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.64 E-value=1.1e-08 Score=89.15 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=28.6
Q ss_pred CcEEEECCchHHHHHHHhcccC---CCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~---g~~v~lie~~~ 95 (436)
.||+||||||||++||+++++. +.+|+|||++.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~ 37 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 5899999999999999988764 46799999864
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.61 E-value=7.9e-09 Score=78.21 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=51.7
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~ 308 (436)
.+|+|+|||+|+||+|+|.+|+..+ ++++++.+....... ..++.. ...+.+
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~a--------------k~v~~~~~r~~~~~~-------------~~~~~~-~~~i~~ 82 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVA--------------KHPIYQSLLGGGDIQ-------------NESLQQ-VPEITK 82 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTS--------------CSSEEEECTTCCSCB-------------CSSEEE-ECCEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhc--------------CEEEEEEecCccccc-------------ccccee-cCCeeE
Confidence 3469999999999999999998765 677777664322111 112222 224677
Q ss_pred EeC--CeEEEcCCcEEe-cceEEEe
Q 013810 309 VDS--QKLILNDGTEVP-YGLLVWS 330 (436)
Q Consensus 309 i~~--~~v~~~~g~~i~-~D~vi~a 330 (436)
++. ..+.+.||+++. .|.||+|
T Consensus 83 ~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 83 FDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EETTTTEEEETTTEEECCCSEEEEC
T ss_pred EecCCCEEEEcCCCEEeCCCEEEEC
Confidence 764 459999999876 7999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=9.8e-09 Score=90.45 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=36.5
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+..+||||||||++||+||..|++.|++|+|||++++++.
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG 42 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence 4569999999999999999999999999999999987654
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.60 E-value=1.4e-08 Score=95.29 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=36.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccc------CCCeEEEEcCCCcceec
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~------~g~~v~lie~~~~~~~~ 100 (436)
+..+|||||||||||++||+.|++ .|++|+||||.......
T Consensus 30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k 76 (380)
T d2gmha1 30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH 76 (380)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence 346899999999999999999987 89999999999875544
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=3.2e-08 Score=82.69 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+||+||||||+|++||+++++.|.+|+|||++
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 79999999999999999999999999999975
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.57 E-value=1.1e-07 Score=84.96 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=34.2
Q ss_pred CCCcEEEECCchHHHHHHHhccc-CCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~v~lie~~~~~~~ 99 (436)
..+||+|||||||||+||.+|++ .|++|+|||+++.+..
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG 71 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCC
Confidence 35799999999999999999976 6999999999876543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.57 E-value=4.9e-08 Score=89.43 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||+|||||+|||+||+.|++.|++|+|||+.+..
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~ 58 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 58 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999997653
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.56 E-value=7.1e-08 Score=77.67 Aligned_cols=86 Identities=10% Similarity=0.100 Sum_probs=55.7
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC--CCcccHHHHHHHHHHHHhcCCEEEecc-e
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI--LSSFDDRLRHYATTQLSKSGVRLVRGI-V 306 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~--l~~~~~~~~~~~~~~l~~~gV~i~~~~-v 306 (436)
.++|+|||||++|+|+|..+.+.+ ...|++++|.+. ++... .....+...+++++... .
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~G-------------A~~V~vi~rr~~~~~~a~~-----~~~~~a~~~~~~~~~~~~~ 106 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCG-------------ARRVFLVFRKGFVNIRAVP-----EEVELAKEEKCEFLPFLSP 106 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTT-------------CSEEEEECSSCGGGCCSCH-----HHHHHHHHTTCEEECSEEE
T ss_pred CCEEEEECCChhHHHHHHHHHHcC-------------CcceeEEEeCChhhhccch-----hheeecccccceeEecccc
Confidence 358999999999999999998876 278999998543 22221 12223455678887763 3
Q ss_pred EEEeC--C---eEEE------cCC---------cEEecceEEEecCC
Q 013810 307 KDVDS--Q---KLIL------NDG---------TEVPYGLLVWSTGV 333 (436)
Q Consensus 307 ~~i~~--~---~v~~------~~g---------~~i~~D~vi~a~G~ 333 (436)
.++.. + .+.. ++| .+++||.||+|+|.
T Consensus 107 ~ei~~~~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 107 RKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEecCCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 33321 1 1111 122 35899999999983
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.55 E-value=1.8e-08 Score=91.53 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=34.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
|||+|||||+|||+||++|++.|++|+|||+++.++.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG 38 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence 6899999999999999999999999999999887543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.53 E-value=2.4e-08 Score=91.92 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+||+|||||+|||+||.+|++.|++|+|||+++..+.
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG 67 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 67 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence 347999999999999999999999999999999887543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.52 E-value=2.8e-08 Score=87.86 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCCCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 58 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++..++||||||||++||++|+.|+++|++|+|||++.
T Consensus 2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34456899999999999999999999999999999864
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.9e-08 Score=91.77 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=35.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
++.||||||||+|||+||..|++.|++|+|+|+++.++.
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GG 42 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG 42 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcc
Confidence 457899999999999999999999999999999988654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.49 E-value=2.9e-08 Score=88.23 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=64.1
Q ss_pred hcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCc-h----hcccCCC----CCCCCCcEEeC----CC
Q 013810 296 KSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS-T----LVKSLDL----PKSPGGRIGID----EW 357 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~-~----~~~~~~l----~~~~~G~i~vd----~~ 357 (436)
..+..+..+. +..++. . .|.+.||+.+.+|.++++...... . +...+.- ..+..++..++ +.
T Consensus 222 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~ 301 (347)
T d1b5qa1 222 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301 (347)
T ss_dssp BCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred hcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence 3455666663 666643 2 367789999999999998764221 0 0001100 00112222222 22
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
++ ++.++||++||+++.. .+..++.|+.+|+.||+.|+...
T Consensus 302 ~~-~~~~~v~~~GD~~~~~-------~~~~~~gA~~sG~~aA~~l~~~~ 342 (347)
T d1b5qa1 302 LR-APVGRVYFTGEHTSEH-------YNGYVHGAYLSGIDSAEILINCA 342 (347)
T ss_dssp HH-CCBTTEEECSGGGCSS-------CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccCCEEEEEccccCc-------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45 6889999999998742 26678889999999999998653
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.46 E-value=1.2e-07 Score=84.71 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCcc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHM 97 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~~ 97 (436)
.||+|||||||||++|..|++.|+ +|+|+|+.+.+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 589999999999999999999996 89999998754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=4.8e-08 Score=88.43 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=35.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
++||||||||+|||+||..|++.|++|+|||++++++.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG 38 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence 47999999999999999999999999999999988544
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.43 E-value=8.5e-08 Score=87.58 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
..||||||||+|||+||++|++.|.+|+||||.+..
T Consensus 19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~ 54 (317)
T d1qo8a2 19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFS 54 (317)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 479999999999999999999999999999997643
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=2.5e-07 Score=84.11 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccC--CCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--g~~v~lie~~~~ 96 (436)
..||||||+|+|||+||+++++. |.+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~ 41 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP 41 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 47999999999999999999875 778999998753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.41 E-value=7.5e-08 Score=87.72 Aligned_cols=38 Identities=16% Similarity=0.392 Sum_probs=35.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
+++|+|||||++||+||..|++.|++|+|||++++++.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 47899999999999999999999999999999998654
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.40 E-value=5.5e-08 Score=84.42 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~ 97 (436)
.|||+|||||||||+||.+|++.|++|+|||+.+.+
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 589999999999999999999999999999987754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.40 E-value=1.8e-07 Score=82.91 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~ 276 (436)
+|+|||+|++|+-+|..|++.| . +|+|+++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G--------------~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAG--------------ITDLLILEAT 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTT--------------CCCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHhCC--------------CCcEEEEECC
Confidence 7999999999999999999865 4 68888874
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.39 E-value=9.1e-07 Score=80.89 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=58.5
Q ss_pred HhcCCEEEecc-eEEEeC--CeEE--E----cCCcEEecceEEEecCCCCchhcccCC----CCC----------CCCCc
Q 013810 295 SKSGVRLVRGI-VKDVDS--QKLI--L----NDGTEVPYGLLVWSTGVGPSTLVKSLD----LPK----------SPGGR 351 (436)
Q Consensus 295 ~~~gV~i~~~~-v~~i~~--~~v~--~----~~g~~i~~D~vi~a~G~~p~~~~~~~~----l~~----------~~~G~ 351 (436)
++.|++++.++ |++|+. +++. + .++++++||.||+|++... ++.+. +.- .+..+
T Consensus 246 ~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~---l~~i~~~p~l~~~~~~ai~~~~~~~~~ 322 (370)
T d2iida1 246 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRA---VRLIKFNPPLLPKKAHALRSVFTPYQF 322 (370)
T ss_dssp HHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHH---HTTSEEESCCCHHHHHHHHHCCCTTHH
T ss_pred HhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHH---HhhCccCCCCCHHHHHHHHhcCCcccc
Confidence 34578888884 888853 3333 2 2446799999999986321 11110 100 00011
Q ss_pred EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 352 i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
......+. +...+||.+||++..+ ...+..|+.+|..||.+|..
T Consensus 323 ~~~~~~~~-~~~g~v~~aGd~~~~~--------~~~~~~a~~sG~~aA~~i~~ 366 (370)
T d2iida1 323 QHFSDPLT-ASQGRIYFAGEYTAQA--------HGWIDSTIKSGLRAARDVNL 366 (370)
T ss_dssp HHHHHHHH-CCBTTEEECSGGGSSS--------SSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhh-cccCCEEEecccccCC--------CcccHHHHHHHHHHHHHHHh
Confidence 11122232 3456799999988752 23467799999999999864
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.33 E-value=2.6e-07 Score=83.27 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=59.2
Q ss_pred cCCEEEecc-eEEEeCC----eEEEc-CC--cEEecceEEEecCCCCc-hhcccCCC-------CCCCCCcEE---eCCC
Q 013810 297 SGVRLVRGI-VKDVDSQ----KLILN-DG--TEVPYGLLVWSTGVGPS-TLVKSLDL-------PKSPGGRIG---IDEW 357 (436)
Q Consensus 297 ~gV~i~~~~-v~~i~~~----~v~~~-~g--~~i~~D~vi~a~G~~p~-~~~~~~~l-------~~~~~G~i~---vd~~ 357 (436)
.|+++++++ |++|+.+ .+++. +| ++++||.||+|+|.... .++..+.- .....|... ..+.
T Consensus 232 ~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (347)
T d2ivda1 232 LGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDA 311 (347)
T ss_dssp HGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBTTHHHHHHHHHH
T ss_pred hhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceecCcccceecccc
Confidence 377888885 8888642 34443 33 46899999999985322 23222210 011122211 1111
Q ss_pred CCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 358 ~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
.. ++.|++|++||...+ .....|+.+|+.+|+.|.
T Consensus 312 ~~-~~~p~~~~~G~~~~g----------~~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 312 AL-QRLPGLHLIGNAYKG----------VGLNDCIRNAAQLADALV 346 (347)
T ss_dssp HH-HTSTTEEECSTTTSC----------CSHHHHHHHHHHHHHHHC
T ss_pred cc-cCCCCEEEecccccC----------CCHHHHHHHHHHHHHHhh
Confidence 22 689999999998774 356779999999998874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.3e-07 Score=87.40 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCc-hhcccCCC---------CCCCCCc-
Q 013810 288 HYATTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDL---------PKSPGGR- 351 (436)
Q Consensus 288 ~~~~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l---------~~~~~G~- 351 (436)
......+++.|++++.++ |.+|+.+ .|++.||+++++|.||+|++..-- .+.-.-.+ .....+.
T Consensus 211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~ 290 (383)
T d2v5za1 211 QVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPGIL 290 (383)
T ss_dssp HHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTTHH
T ss_pred HHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCCcc
Confidence 334445567799999995 8888653 377789999999999999864211 10000001 0111121
Q ss_pred EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhh
Q 013810 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFL 404 (436)
Q Consensus 352 i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 404 (436)
-.....+. ....+|+.+|+..... .+.....|+.+|+.+|..|..
T Consensus 291 ~~~~~~~~-~~~~~~~~~G~~~~~~-------~~g~~~ga~~~g~~~a~~i~~ 335 (383)
T d2v5za1 291 TQYGRVLR-QPVDRIYFAGTETATH-------WSGYMEGAVEAGERAAREILH 335 (383)
T ss_dssp HHHGGGTT-CCBTTEEECSGGGCSS-------STTSHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhc-CCcCceEecccccccc-------CCcchHHHHHHHHHHHHHHHH
Confidence 12222233 4567899999876532 145567799999999988854
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.25 E-value=2.4e-06 Score=76.70 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=96.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCC--------C-------------c--------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL--------S-------------S-------- 281 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l--------~-------------~-------- 281 (436)
.|+|||+|++|+-+|..|.+.+ .+|+++++. .+. + .
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G--------------~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~ 74 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELG--------------RSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQE 74 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHH
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCC
Confidence 7999999999999999998766 789999874 210 0 0
Q ss_pred --------ccHHHHHHHHHHHHhcCC--EEEecc-eEEEe--CC----eEEEcCCcEEecceEEEecCCCCchhc-ccCC
Q 013810 282 --------FDDRLRHYATTQLSKSGV--RLVRGI-VKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPSTLV-KSLD 343 (436)
Q Consensus 282 --------~~~~~~~~~~~~l~~~gV--~i~~~~-v~~i~--~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~-~~~~ 343 (436)
-.+++.+++++..++.++ .+..++ |+++. +. .|++.++.+..+|.||+|+|+...+.. .-.+
T Consensus 75 ~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~ 154 (298)
T d1w4xa1 75 WNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFK 154 (298)
T ss_dssp CCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHT
T ss_pred CCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccc
Confidence 024566778888888888 477774 88774 32 478889999999999999997443211 1112
Q ss_pred CCC-CCCCc---------EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 344 LPK-SPGGR---------IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 344 l~~-~~~G~---------i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
++. ..+|. ...--.+.+.+.||.|.++--..... .......+..|+..+++-|.
T Consensus 155 ~~i~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~------~~~~~~~~e~q~~~i~~~i~ 218 (298)
T d1w4xa1 155 IDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSA------LSNMLVSIEQHVEWVTDHIA 218 (298)
T ss_dssp SEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGG------GSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccc------cccHHHHHHHHHHHHHHHHH
Confidence 221 11121 11111234468999999754333100 02344556677777776654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.23 E-value=6e-06 Score=75.46 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC------------------------------
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------ 280 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~------------------------------ 280 (436)
|+|+|||||++|+-+|..|.+.+ ...+|+++++..-+.
T Consensus 5 KrVaIIGaG~sGl~~A~~L~~~~------------~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (335)
T d2gv8a1 5 RKIAIIGAGPSGLVTAKALLAEK------------AFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 72 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT------------CCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCS
T ss_pred CeEEEECcCHHHHHHHHHHHHhC------------CCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccc
Confidence 58999999999999999987532 225899999853110
Q ss_pred -----------------------------------cc--cHHHHHHHHHHHHhcCCEEEecc-eEEEeC--Ce--EEEcC
Q 013810 281 -----------------------------------SF--DDRLRHYATTQLSKSGVRLVRGI-VKDVDS--QK--LILND 318 (436)
Q Consensus 281 -----------------------------------~~--~~~~~~~~~~~l~~~gV~i~~~~-v~~i~~--~~--v~~~~ 318 (436)
.+ .+++.+++....+..+..++.++ |++++. ++ |++.+
T Consensus 73 ~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~ 152 (335)
T d2gv8a1 73 AALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKG 152 (335)
T ss_dssp SSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEe
Confidence 00 13556666777677777888885 877753 33 55543
Q ss_pred C---c---EEecceEEEecCCC
Q 013810 319 G---T---EVPYGLLVWSTGVG 334 (436)
Q Consensus 319 g---~---~i~~D~vi~a~G~~ 334 (436)
+ + +..+|.||+|+|..
T Consensus 153 ~~~~~~~~~~~~d~VI~AtG~~ 174 (335)
T d2gv8a1 153 TKAGSPISKDIFDAVSICNGHY 174 (335)
T ss_dssp SSTTCCEEEEEESEEEECCCSS
T ss_pred cCCCCeEEEEEeeEEEEccccc
Confidence 2 1 45699999999975
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.23 E-value=9.8e-06 Score=73.56 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|.+|+-+|..|++.+ .+|.|+++.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G--------------~~V~llEk~ 55 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAG--------------AKVILLEKE 55 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTT--------------CCEEEECSS
T ss_pred eEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 6999999999999999999866 788888874
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=1.5e-06 Score=75.01 Aligned_cols=127 Identities=18% Similarity=0.169 Sum_probs=75.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCC-----------cccHHHHHHHHHHHHhcCCE
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------SFDDRLRHYATTQLSKSGVR 300 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~-----------~~~~~~~~~~~~~l~~~gV~ 300 (436)
+|+|||+|+.|+.+|..|.+.+ .+.+|+++++.+... .....+.......+.+.|++
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~------------~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHH------------SRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCA 70 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC------------SSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEE
T ss_pred eEEEECccHHHHHHHHHHHhcC------------CCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCee
Confidence 8999999999999999998653 347999999964221 12334455566777888999
Q ss_pred EEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCchhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEecccccc
Q 013810 301 LVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGY 375 (436)
Q Consensus 301 i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~ 375 (436)
++.+. |.. + +.+.+ -.-.+|.+++|+|..+.......+........+......+....+..+..|+....
T Consensus 71 ~~~~~~v~~-~---~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (230)
T d1cjca2 71 FYGNVEVGR-D---VTVQE-LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRG 141 (230)
T ss_dssp EEBSCCBTT-T---BCHHH-HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHC
T ss_pred EEeeEEeCc-c---ccHHH-HHhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccC
Confidence 98774 311 0 00000 01258999999998765222222211111111222111222466788888887654
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=5.3e-06 Score=67.27 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeE
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDV 88 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v 88 (436)
.++|+|||||..|+-+|..+.+.|.++
T Consensus 29 gkrVvVIGgG~~g~d~a~~~~r~G~~~ 55 (162)
T d1ps9a2 29 GNKVAIIGCGGIGFDTAMYLSQPGEST 55 (162)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence 479999999999999999999998763
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.07 E-value=5.4e-06 Score=66.75 Aligned_cols=100 Identities=17% Similarity=0.151 Sum_probs=59.5
Q ss_pred CcEEEE--CCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 63 PRVVVL--GSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 63 ~~VvII--GgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
..|+|+ |||+.|+.+|..|++.|.+|+||++.+.+... .. .. ....+... ....++.++.+ +
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-----~~-----~~----~~~~~~~~-l~~~GV~i~~~~~ 104 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-----HF-----TL----EYPNMMRR-LHELHVEELGDHF 104 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-----HH-----TT----CHHHHHHH-HHHTTCEEEETEE
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-----cc-----hh----HHHHHHHH-HhhccceEEeccE
Confidence 456666 99999999999999999999999998653211 10 00 01111111 23467888776 7
Q ss_pred eEeEeCCCCEEEEEEecCCcc------------cCCCCceeeeccEEEEeCC
Q 013810 140 CAGIDTDNHVVHCETVTDELR------------TLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 140 v~~id~~~~~v~~~~~~~g~~------------~~~~~~~~~~~d~lViAtG 179 (436)
+.+++.+. +.+........ .....+..+++|.+|+|||
T Consensus 105 v~~i~~~~--v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtg 154 (156)
T d1djqa2 105 CSRIEPGR--MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154 (156)
T ss_dssp EEEEETTE--EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESC
T ss_pred EEEecCcc--eEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEec
Confidence 77887543 33332111110 0011123578888888887
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=98.06 E-value=9.2e-07 Score=81.52 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCcEEEECCchHHHHHHHhcc-----cCCCeEEEEcCCCccee
Q 013810 62 KPRVVVLGSGWAGCRLMKGID-----TSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~-----~~g~~v~lie~~~~~~~ 99 (436)
.+||+||||||+||++|..|+ +.|++|+|||+.+.+..
T Consensus 7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~ 49 (360)
T d1pn0a1 7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY 49 (360)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence 489999999999999999996 68999999999876544
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.05 E-value=6.2e-06 Score=65.96 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~ 96 (436)
...+|||||||.+|+-||..+.+.|.+ |+++.+.+.
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~ 80 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF 80 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence 346899999999999999999999875 889987654
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.00 E-value=4.8e-05 Score=68.67 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|.+|+-.|..+++.+ .+|.|+++.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G--------------~~V~vlEK~ 51 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAG--------------ANVILVDKA 51 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCC
Confidence 5999999999999999999876 788888764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=1.2e-06 Score=79.48 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHhccc--CCCeEEEEcCCCcceec
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT 100 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~--~g~~v~lie~~~~~~~~ 100 (436)
..+||+|||||||||+||.+|++ .|++|+|+|+++.+...
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 90 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcce
Confidence 35799999999999999999985 59999999998876543
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=4.5e-06 Score=71.65 Aligned_cols=47 Identities=11% Similarity=0.056 Sum_probs=30.8
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHH--------HHHHhhhcCCCCccEEEEEeCC
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIM--------RDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~--------~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.+++|+|||+|++|+++|..+.+... ......... ..-.+|+++.|.
T Consensus 38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~-~g~~~V~iv~RR 92 (225)
T d1cjca1 38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ-SRVKTVWIVGRR 92 (225)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT-CCCCEEEEECSS
T ss_pred cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhc-cCCCeEEEEEEc
Confidence 35799999999999999999976210 000011110 123799999985
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=97.96 E-value=1.2e-05 Score=70.92 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHhcCCEEEecc-eEEEeCC----eEEEcCCcEEecceEEEecCCCCchhcccCCCCC
Q 013810 291 TTQLSKSGVRLVRGI-VKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
.+.+++.|++++.++ |++++.+ .|++++| ++.||.||+|+|.....+++.+|+..
T Consensus 158 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~ 217 (276)
T d1ryia1 158 VKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN 217 (276)
T ss_dssp HHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC
T ss_pred HHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc
Confidence 335567899999884 8888643 3566665 69999999999988888888888754
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.96 E-value=1.8e-06 Score=80.19 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++||||||+|+||+.+|.+|++.|++|+|+|+...
T Consensus 3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~ 38 (379)
T d2f5va1 3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEI 38 (379)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCC
Confidence 468999999999999999999999999999998754
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.96 E-value=5.2e-05 Score=68.00 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|.+|+-+|..+++.+ .+|.|+++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G--------------~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSG--------------AKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCC
Confidence 6999999999999999999876 8899998753
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=2.3e-05 Score=66.62 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=44.8
Q ss_pred CCCCCCCCc-cccccccChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEECCChHHHHHHHHHHHHHH-------
Q 013810 183 STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM------- 254 (436)
Q Consensus 183 ~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~~~------- 254 (436)
+.++|||.+ ++++...+ +..+.+........+. ...+++|+|||+|++|+++|..+.....
T Consensus 2 R~L~IPGedl~gV~~A~d------fl~~~N~~p~~~~~~~-----~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi 70 (216)
T d1lqta1 2 RMLNIPGEDLPGSIAAVD------FVGWYNAHPHFEQVSP-----DLSGARAVVIGNGNVALDVARILLTDPDVLARTDI 70 (216)
T ss_dssp CCCCCTTTTSTTEEEHHH------HHHHHTTCGGGTTCCC-----CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCC
T ss_pred CCCCCCCCCCCCcEeHHH------HHHHHhCCccccccCc-----cccCceEEEECCCchhHhhhhhhccCHhhhccCCC
Confidence 467899976 55554333 3333322111111110 0235699999999999999998874210
Q ss_pred -HHHHhhhcCCCCccEEEEEeCC
Q 013810 255 -RDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 255 -~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
........ ...-.+|+++.|.
T Consensus 71 ~~~~l~~l~-r~~~~~V~iv~RR 92 (216)
T d1lqta1 71 ADHALESLR-PRGIQEVVIVGRR 92 (216)
T ss_dssp CHHHHHHHT-TCCCCEEEEECSS
T ss_pred cHHHHHHHh-hcCCceEEEEEEC
Confidence 00001111 1224789999984
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=1.2e-06 Score=80.09 Aligned_cols=36 Identities=28% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+.+||+|||+|+|||+||+++++.|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~ 41 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFP 41 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 358999999999999999999999999999999754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=5.8e-05 Score=68.83 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=28.2
Q ss_pred EEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 233 vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
|+|||+|.+|+-+|..|++.| .+|+|+++.+
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G--------------~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSG--------------LNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTT--------------CCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCC
Confidence 899999999999999999876 8999999843
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.89 E-value=3.9e-05 Score=65.07 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=63.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC--CCC-----Cc------------c---c---HHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EIL-----SS------------F---D---DRL 286 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~--~~l-----~~------------~---~---~~~ 286 (436)
.|+|||+|+.|+|.|...++.+ .++.|++.+ .+. +. . . ...
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G--------------~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~ 69 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKG--------------VRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF 69 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhH
Confidence 6999999999999999999877 899998763 110 00 0 0 112
Q ss_pred HHHHHHHHHh-cCCEEEecceEEEe--CC---eEEEcCCcEEecceEEEecCC
Q 013810 287 RHYATTQLSK-SGVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 287 ~~~~~~~l~~-~gV~i~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~ 333 (436)
...+++.++. .++.++.++|.++. ++ +|++.+|.++.+..||+++|.
T Consensus 70 raQ~k~~l~~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGT 122 (230)
T d2cula1 70 HARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGS 122 (230)
T ss_dssp HHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred HHHHHHHHhhhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCc
Confidence 2334444443 38999988877762 33 577899999999999999995
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.88 E-value=2.4e-05 Score=70.16 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHhcCCEEEecc-eEEEeC--Ce---EEEcCCcEEecceEEEecCCCCchhcccCCCCC
Q 013810 293 QLSKSGVRLVRGI-VKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (436)
Q Consensus 293 ~l~~~gV~i~~~~-v~~i~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (436)
.+++.|++++.++ |+++.. ++ |.+++| +++||.||+|+|.....+++.+|+.+
T Consensus 157 ~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l 215 (305)
T d1pj5a2 157 RTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV 215 (305)
T ss_dssp HHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC
T ss_pred hhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc
Confidence 3456799999985 887753 33 555555 69999999999988777877777654
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=3.4e-06 Score=76.10 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=56.7
Q ss_pred HHHHHhcCCEEEecc-eEEE-eC-----------CeEEE---cCCc--EEecceEEEecCCCCc-----------h----
Q 013810 291 TTQLSKSGVRLVRGI-VKDV-DS-----------QKLIL---NDGT--EVPYGLLVWSTGVGPS-----------T---- 337 (436)
Q Consensus 291 ~~~l~~~gV~i~~~~-v~~i-~~-----------~~v~~---~~g~--~i~~D~vi~a~G~~p~-----------~---- 337 (436)
.+.+++.+++++.+. +.++ .+ .++.. .+++ .+.++.||+|+|--.. +
T Consensus 145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~ 224 (305)
T d1chua2 145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI 224 (305)
T ss_dssp HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHH
T ss_pred HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccE
Confidence 345566788888773 4333 11 12333 2343 4789999999984321 0
Q ss_pred -hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
+....|.++..-++|.+|++.+ |+.|++||+|+++.
T Consensus 225 ~mA~~aGa~l~~m~~iq~~~~g~-t~~~g~~a~G~~~~ 261 (305)
T d1chua2 225 AMAWRAGCRVANCGGVMVDDHGR-TDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHTTCCEECSCEEECCTTCB-CSSBTEEECGGGEE
T ss_pred eeccccceeeEecceeEECCccc-CCCCCceecccEEE
Confidence 3345688888788999999999 89999999999754
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=97.86 E-value=3.4e-05 Score=68.21 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCCCchhcccCCCCCC
Q 013810 289 YATTQLSKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKS 347 (436)
Q Consensus 289 ~~~~~l~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~ 347 (436)
.+.+.+++.|++++.++ |.+++. + .|.+++| ++.||.||+|+|...+.+++.+|+...
T Consensus 155 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~~~ 217 (281)
T d2gf3a1 155 AYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDIP 217 (281)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEECC
T ss_pred ccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCCccc
Confidence 33445567899999884 888753 3 3555565 699999999999887788888887653
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=5.6e-05 Score=58.05 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=62.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||.+.+..|..|++..-+|+||-+.+.+.-.+. ..+.+....++.++.. ++
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~--------------------~~~~~~~~~~I~v~~~~~v 89 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQV--------------------LQDKLRSLKNVDIILNAQT 89 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHH--------------------HHHHHHTCTTEEEESSEEE
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecccccccccc--------------------cccccccccceeEEcCcce
Confidence 48999999999999999999998889999988765321110 1111233456777654 67
Q ss_pred EeEeCCCCE---EEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 141 AGIDTDNHV---VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 141 ~~id~~~~~---v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
..+..++.. +.+....+|+ ++++..|.|+++.|
T Consensus 90 ~~i~G~~~~v~~v~l~~~~tge------~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 90 TEVKGDGSKVVGLEYRDRVSGD------IHNIELAGIFVQIG 125 (126)
T ss_dssp EEEEESSSSEEEEEEEETTTCC------EEEEECSEEEECSC
T ss_pred EEEEccccceeeEEEEECCCCC------EEEEECCEEEEEeC
Confidence 777765433 3444333443 34799999999988
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.81 E-value=4.7e-06 Score=76.76 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccc----CCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~----~g~~v~lie~~~~ 96 (436)
..||||||+|+|||+||++|++ .|++|+||||.+.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~ 59 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 59 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence 4799999999999999999964 7999999999754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.80 E-value=8.5e-05 Score=64.72 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=82.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC-CCCCc------ccHHHHHHHHH------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS------FDDRLRHYATT------------ 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~-~~l~~------~~~~~~~~~~~------------ 292 (436)
||+|||+|++|+-+|..|++.| .+|+++++. ..... +.+...+.+.+
T Consensus 6 kV~IiGaG~aGl~~A~~L~~~G--------------~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~ 71 (265)
T d2voua1 6 RIAVVGGSISGLTAALMLRDAG--------------VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPS 71 (265)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCC
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCC
Confidence 8999999999999999999876 999999984 22221 22332222222
Q ss_pred --------------------------------HH-HhcCCEEEecc-eEEEeC--C--eEEEcCCcEEecceEEEecCCC
Q 013810 293 --------------------------------QL-SKSGVRLVRGI-VKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 293 --------------------------------~l-~~~gV~i~~~~-v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
.+ ...++.++.+. +.+++. + .+.+.||+++.+|++|.|.|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~ 151 (265)
T d2voua1 72 SSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGA 151 (265)
T ss_dssp CEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTT
T ss_pred CcceeEeccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccc
Confidence 00 11234444442 555542 2 3667899999999999999987
Q ss_pred Cch--hcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhh
Q 013810 335 PST--LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSF 403 (436)
Q Consensus 335 p~~--~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 403 (436)
... ..... ...........+..||.+....+ ........++..+...+..+.
T Consensus 152 s~~r~~~~~~-------------~~~~~~~~~~~~~~~~~a~~~~p----~~~~g~~~~~~d~~~l~~~l~ 205 (265)
T d2voua1 152 SVVRKRLLGI-------------ETVDRMVHGRVLLIGDAAVTPRP----HAAAGGAKASDDARTLAEVFT 205 (265)
T ss_dssp CHHHHHHHCC-------------CCCSCSEETTEEECGGGTSBCCG----GGSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccccc-------------ccccccccccccccccccccccc----cccccceeeeccHHHHHHHHh
Confidence 651 11110 00010233456777887764321 112233455566666665554
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.73 E-value=4e-06 Score=72.44 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=79.6
Q ss_pred cccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC-Cc---------cc--HHHHHHHHHHHH
Q 013810 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL-SS---------FD--DRLRHYATTQLS 295 (436)
Q Consensus 228 ~~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l-~~---------~~--~~~~~~~~~~l~ 295 (436)
...++|+|||+|++|+.+|..|++.+ .+|+++++.+.+ .. .. ..........+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G--------------~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESG--------------YTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQIT 112 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHH
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhc--------------cceeeEeeccccCCccccccccceeecccccchhHHHHHH
Confidence 45569999999999999999999876 899999985422 11 11 112222223333
Q ss_pred hcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCchh-cccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 296 KSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTL-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 296 ~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
+.+...... ........+...+..++.+|.||+|+|..+... ....+.+ + ... .....+++..++...
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~----~-~~~-----~~~~~~~~~~~~~~~ 181 (233)
T d1djqa3 113 KLLKKNKES-QLALGQKPMTADDVLQYGADKVIIATGASECTLWNELKARE----S-EWA-----ENDIKGIYLIGDAEA 181 (233)
T ss_dssp HHHTTCTTC-EEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTT----H-HHH-----HTTCCEEEECGGGTS
T ss_pred HHhhcceee-eeecccccccchhhhhhccceeeeccCCCcccccccccccc----c-ccc-----hhhhhhhhhccccCC
Confidence 221111000 001111222223334678999999999887632 1111110 0 000 024456777776543
Q ss_pred cccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 375 YLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
.-.+.-+-..|..+|..+....
T Consensus 182 ----------~vvViGgG~~g~e~A~~l~~~g 203 (233)
T d1djqa3 182 ----------PRLIADATFTGHRVAREIEEAN 203 (233)
T ss_dssp ----------CCCHHHHHHHHHHHHHTTTSSC
T ss_pred ----------ceeEecCchHHHHHHHHHHhcC
Confidence 3456667777877887776543
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.72 E-value=8.4e-06 Score=75.53 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+.||||||+|+||+.+|.+|++.|++|+|+|+...
T Consensus 5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999998643
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.0002 Score=54.84 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-Ee
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (436)
.++|+|||||-+++..|..|++..-+|+||-+.+.+...+.. ...+. ......++.++.. .+
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~-------------~~~~~----~~~~~~~i~~~~~~~v 89 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKIL-------------IKRLM----DKVENGNIILHTNRTL 89 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHH-------------HHHHH----HHHHTSSEEEECSCEE
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHH-------------HHHHH----HhhcccceeEecceEE
Confidence 479999999999999999999998999999887653221111 01111 1122345555543 66
Q ss_pred EeEeCCCCE---EEEEEecCCcccCCCCceeeeccEEEEeCC
Q 013810 141 AGIDTDNHV---VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (436)
Q Consensus 141 ~~id~~~~~---v~~~~~~~g~~~~~~~~~~~~~d~lViAtG 179 (436)
..+..++.. +.+....+++ +.+.+..|.|+++.|
T Consensus 90 ~~i~G~~~~v~~v~l~~~~~~e-----~~~~l~~dgvFv~iG 126 (126)
T d1trba2 90 EEVTGDQMGVTGVRLRDTQNSD-----NIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEEECSSSEEEEEEECCTTCC-----CCEEEECSEEEECSC
T ss_pred EEEECCCCceEEEEEEECCCCc-----eEEEEECCEEEEEeC
Confidence 777765543 3343222222 123689999999987
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.63 E-value=1.3e-05 Score=74.11 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|||||+|+||+.+|.+|++.|++|+|+|+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 4799999999999999999999999999998754
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.57 E-value=0.00034 Score=53.65 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=61.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCcceecchhhhhhcCcccccccccchhhcchhhhcCCCcEEEEe-E
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (436)
..++|+|||||-+.+..|.+|++.--+|+||-+.+.+.-.+.+ .+.+....++.++.. +
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~--------------------~~~l~~~~nI~v~~~~~ 92 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIM--------------------QQRALSNPKIDVIWNSS 92 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHH--------------------HHHHHTCTTEEEECSEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhh--------------------hhccccCCceEEEeccE
Confidence 3589999999999999999999988899999887663221110 111233456776654 6
Q ss_pred eEeEeCCCC-----EEEEEEecCCcccCCCCceeeeccEEEEeC
Q 013810 140 CAGIDTDNH-----VVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (436)
Q Consensus 140 v~~id~~~~-----~v~~~~~~~g~~~~~~~~~~~~~d~lViAt 178 (436)
+..+..+.. .+.+.+..+++ ++++..|.|+||.
T Consensus 93 v~~i~Gd~~~~~v~~v~l~~~~tge------~~~l~~dGvFVaI 130 (130)
T d1vdca2 93 VVEAYGDGERDVLGGLKVKNVVTGD------VSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEESSSSSSEEEEEEEETTTCC------EEEEECSEEEECS
T ss_pred EEEEEccCCcccEEEEEEEECCCCC------EEEEECCEEEEEC
Confidence 667654432 24454434443 3479999999973
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.55 E-value=3.2e-06 Score=73.28 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCCEEEecceEEEeCCeEEEcCCcEEecceEEEecCCCCchhc
Q 013810 284 DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (436)
Q Consensus 284 ~~~~~~~~~~l~~~gV~i~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (436)
..+...+.+.+.++|++|+..+|+++++ .....+|.||.|+|.....+.
T Consensus 142 ~~~~~~L~~~~~~~G~~~~~~~v~~l~~-------~~~~~~d~vVnctG~~a~~l~ 190 (246)
T d1kifa1 142 RKYLQWLTERLTERGVKFFLRKVESFEE-------VARGGADVIINCTGVWAGVLQ 190 (246)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCHHH-------HHHTTCSEEEECCGGGHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEEEeEeCCHHH-------hccCCCCEEEECCcccccccC
Confidence 4566778888999999998876665431 123458999999998776443
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.54 E-value=0.001 Score=57.92 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=85.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCcc-EEEEEeCCCCCC------cccHHHHHHHHH------------
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI-HVTLIEANEILS------SFDDRLRHYATT------------ 292 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~-~V~lv~~~~~l~------~~~~~~~~~~~~------------ 292 (436)
+|+|||||++|+-+|..|++.| . +|+++++.+... .+.+...+.+.+
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~G--------------i~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~ 68 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAG--------------IGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAI 68 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSE
T ss_pred EEEEECcCHHHHHHHHHHHhCC--------------CCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhc
Confidence 8999999999999999999865 5 899999854221 122222222111
Q ss_pred --------------------------------------------H--HHhcCCEEEecc-eEEEe--CCe--EEEcCC--
Q 013810 293 --------------------------------------------Q--LSKSGVRLVRGI-VKDVD--SQK--LILNDG-- 319 (436)
Q Consensus 293 --------------------------------------------~--l~~~gV~i~~~~-v~~i~--~~~--v~~~~g-- 319 (436)
. ....++.+..+. ++.+. .+. +.+.++
T Consensus 69 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~ 148 (288)
T d3c96a1 69 PTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHG 148 (288)
T ss_dssp EECEEEEECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTS
T ss_pred ccccceeEcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCC
Confidence 0 112345555542 44433 233 444554
Q ss_pred --cEEecceEEEecCCCCc--hhcccCCCCCCCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 320 --TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 320 --~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
+++.+|+++.|-|.... ........ ............++..+||++....+.. ...+..|+..+
T Consensus 149 ~~~~~~ad~vi~ADG~~S~vr~~~~~~~~--------~~~~~~~~~~~~~~~~~gda~h~~~p~~----g~G~~~ai~d~ 216 (288)
T d3c96a1 149 KPQALGADVLVGADGIHSAVRAHLHPDQR--------PLRDPLPHWGRGRITLLGDAAHLMYPMG----ANGASQAILDG 216 (288)
T ss_dssp CEEEEEESEEEECCCTTCHHHHHHCTTCC--------CCCCCCSCCCBTTEEECTHHHHCCCSST----TCTHHHHHHHH
T ss_pred CeEEEeeceeeccCCccceeeeeeccccc--------cccccccccccCcceecccccceeCCcc----ccchhhhhhhH
Confidence 46899999999998764 11111100 0011111135567999999998643221 23356677888
Q ss_pred HHHHhhhhh
Q 013810 396 HLFQKPSFL 404 (436)
Q Consensus 396 ~~aa~~i~~ 404 (436)
...+..+..
T Consensus 217 ~~l~~~l~~ 225 (288)
T d3c96a1 217 IELAAALAR 225 (288)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777776654
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.46 E-value=2.9e-05 Score=71.59 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.||+||||+|+||+.+|.+|++.|.+|+|+|+...
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 48999999999999999999999999999998753
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.46 E-value=0.0013 Score=60.56 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=48.2
Q ss_pred EEecceEEEecCCCCc---hhcccCCCCC--CCCCcEEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHH
Q 013810 321 EVPYGLLVWSTGVGPS---TLVKSLDLPK--SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQL 395 (436)
Q Consensus 321 ~i~~D~vi~a~G~~p~---~~~~~~~l~~--~~~G~i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g 395 (436)
....+..+++.|.+.. .++....+.. ...+.+.- +.....+++..+||+++.-++. ..+-+..|+..|
T Consensus 200 ~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~s---ip~l~~~G~lLVGDAAG~vnP~----~g~GI~~Am~SG 272 (380)
T d2gmha1 200 ELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQS---IPKLTFPGGLLIGCSPGFMNVP----KIKGTHTAMKSG 272 (380)
T ss_dssp EEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGG---CCCCEETTEEECTTTTCCCBTT----TTBCHHHHHHHH
T ss_pred cccccEEEEeeeCCCcchHHHHhhhhhcccccccccccc---ccccccCCeeEEeccccccchh----hcCCeeeeeccH
Confidence 4567888888887765 2444333221 22211111 1114568999999999975421 145678899999
Q ss_pred HHHHhhhhh
Q 013810 396 HLFQKPSFL 404 (436)
Q Consensus 396 ~~aa~~i~~ 404 (436)
+.||+.|..
T Consensus 273 ~lAAeai~~ 281 (380)
T d2gmha1 273 TLAAESIFN 281 (380)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998863
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=0.0025 Score=56.72 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=52.2
Q ss_pred hcCCEEEecc-eEEE--eCCe---EE---EcCCc--EEecceEEEecCCC-----Cc-----------hhcccCCCCCCC
Q 013810 296 KSGVRLVRGI-VKDV--DSQK---LI---LNDGT--EVPYGLLVWSTGVG-----PS-----------TLVKSLDLPKSP 348 (436)
Q Consensus 296 ~~gV~i~~~~-v~~i--~~~~---v~---~~~g~--~i~~D~vi~a~G~~-----p~-----------~~~~~~~l~~~~ 348 (436)
..+|+++.+. +.++ +++. +. ..+|+ .+.++.||+|+|-- .+ .+....|.++.+
T Consensus 147 ~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa~l~d 226 (311)
T d1kf6a2 147 FPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRD 226 (311)
T ss_dssp CTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCCEES
T ss_pred cCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhcccceee
Confidence 3478888874 5554 2332 22 24565 46899999999832 11 023445666655
Q ss_pred CCcEEeCCCCCCCCCCCEEEeccccc
Q 013810 349 GGRIGIDEWLRVPSVQDVFAVGDCSG 374 (436)
Q Consensus 349 ~G~i~vd~~~~~t~~~~Vya~GD~~~ 374 (436)
-++|.++++.. +..+++|+.|++..
T Consensus 227 me~iq~~p~~~-~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 227 MGGIETDQNCE-TRIKGLFAVGECSS 251 (311)
T ss_dssp CCEEECCTTSB-CSSBTEEECGGGEE
T ss_pred cccccccccch-hcccCCCcCcceee
Confidence 67899999988 78999999999876
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.39 E-value=5.9e-05 Score=70.23 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
.+|+||||||+||+.+|.+|++.+ .+|+|||+.+.
T Consensus 24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 499999999999999999999987 79999999864
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=6.2e-05 Score=64.59 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=62.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCC---------C--cccHHHHHHHHHHHHhcCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------S--SFDDRLRHYATTQLSKSGV 299 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l---------~--~~~~~~~~~~~~~l~~~gV 299 (436)
.+|+|||+|++|+.+|..|++.|.. ....+.+|+++++.+.+ + .....+.+.....+.+.|+
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~-------~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~ 75 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADT-------TEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRF 75 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHH-------STTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTE
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCc-------cccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCc
Confidence 3899999999999999999987721 11234689999995422 1 1234455566667788899
Q ss_pred EEEecc-eEEEeCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 300 RLVRGI-VKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 300 ~i~~~~-v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+++.+. +... +.++ .-...+|.+++++|..+.
T Consensus 76 ~~~~~~~v~~~----~~~~-~~~~~~~~v~~atGa~~~ 108 (239)
T d1lqta2 76 RFFGNVVVGEH----VQPG-ELSERYDAVIYAVGAQSR 108 (239)
T ss_dssp EEEESCCBTTT----BCHH-HHHHHSSEEEECCCCCEE
T ss_pred eEEEEEEeccc----cchh-hhhccccceeeecCCCcc
Confidence 999884 3110 0001 112358999999998754
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.002 Score=57.09 Aligned_cols=31 Identities=19% Similarity=0.511 Sum_probs=25.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|..|+-.|..+++ . .+|.|++..+
T Consensus 9 DVvVVG~G~AGl~AA~~a~~--------------~-g~V~llEK~~ 39 (305)
T d1chua2 9 DVLIIGSGAAGLSLALRLAD--------------Q-HQVIVLSKGP 39 (305)
T ss_dssp SEEEECCSHHHHHHHHHHTT--------------T-SCEEEECSSC
T ss_pred CEEEECccHHHHHHHHHhhc--------------C-CCEEEEECCC
Confidence 69999999999988887653 2 3799998854
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=7.9e-05 Score=53.82 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|+|.|-+|+++|..|.+.|.+|+++|.+.
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 4789999999999999999999999999999764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.24 E-value=0.0006 Score=50.38 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.5
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||+|.+|+-.|..|++...+++++.+.
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 3589999999999999999999877776666554
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.21 E-value=8.9e-05 Score=67.89 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|+||||||+||+.+|.+|++. ++|+|||+.+.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence 48999999999999999999986 99999999864
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.18 E-value=9.1e-05 Score=68.77 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCC-CeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~~ 96 (436)
.+|+||||||+||+..|.+|++.+ ++|+|||+.+.
T Consensus 17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY 52 (385)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 489999999999999999999865 89999999854
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.07 E-value=0.00019 Score=58.58 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++|+|||+|..|..+|.+|.+.|++|+|+|++..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence 37899999999999999999999999999999743
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.0043 Score=55.65 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|..|+-.|..+++.+ .+|+|+++.
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G--------------~~V~lleK~ 39 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSG--------------QTCALLSKV 39 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTT--------------CCCEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHcC--------------CeEEEEeCC
Confidence 6999999999999999999866 788888764
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=96.93 E-value=0.0024 Score=49.51 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=71.7
Q ss_pred cChHHHHHHHHHHHHhccccCCCCCChhhhcccCcEEEEC------CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEE
Q 013810 198 REVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG------GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (436)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvViG------~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~ 271 (436)
....++..+++++.. . +.+.++++.- ++....|+|..+..+. +++. . ..+|.
T Consensus 15 ~~~~~~~~L~~~l~~------~--------~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~l----r~~g--~--r~kv~ 72 (141)
T d1fcda2 15 KAGEQTAILRKQLED------M--------ADGGTVVIAPPAAPFRCPPGPYERASQVAYYL----KAHK--P--MSKVI 72 (141)
T ss_dssp SCSHHHHHHHHHHHH------S--------CTTCCEEEECCCSSCSSTTHHHHHHHHHHHHH----GGGC--S--CCCEE
T ss_pred cccHHHHHHHHHHHh------c--------ccCCeEEEecCCCCccCCchHHHHHHHHHHHH----HHcC--C--CCcEE
Confidence 344667888888732 1 2233555432 4567788888887654 2221 1 24566
Q ss_pred EEeCCCCC---CcccHHHHHHHHHHHHhcCCEEEec---ceEEEeC--CeEEEcCCcEEecceEEEec
Q 013810 272 LIEANEIL---SSFDDRLRHYATTQLSKSGVRLVRG---IVKDVDS--QKLILNDGTEVPYGLLVWST 331 (436)
Q Consensus 272 lv~~~~~l---~~~~~~~~~~~~~~l~~~gV~i~~~---~v~~i~~--~~v~~~~g~~i~~D~vi~a~ 331 (436)
++...+.. +.+.+...+.+.+.++++||+++.+ .+.+++. ..+++.+|+++++|++++.+
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vvP 140 (141)
T d1fcda2 73 ILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIP 140 (141)
T ss_dssp EECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEECC
T ss_pred EEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeCC
Confidence 66654322 2223445666777778899999987 3667764 56888999999999998854
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.92 E-value=0.00026 Score=57.93 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|+|||+|..|+..|..|++.|++|+++++++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~ 35 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 35 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 6899999999999999999999999999998743
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.78 E-value=0.0021 Score=56.47 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|++|+-+|..|++.| .+|+++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G--------------~~v~vlE~~ 34 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAG--------------IDNVILERQ 34 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 7999999999999999999877 889999885
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.73 E-value=0.00058 Score=55.00 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
-+|+|||+|.+|+.||..+.+.|..|+++|.+..
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 5899999999999999999999999999998743
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.68 E-value=0.0007 Score=53.69 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.-+|+|||+|.+|++|+..+.+.|.+|+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 3689999999999999999999999999999864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.67 E-value=0.00053 Score=52.85 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|+|+|+|.-|...|..|.+.|++|++||+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence 4799999999999999999999999999999743
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00048 Score=54.39 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=31.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|||||..|+.-|..|.+.|.+|+||.++
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3589999999999999999999999999999764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00087 Score=53.68 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||+|||+|.-|...|..|++.|++|+++++++.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 5799999999999999999999999999998754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.40 E-value=0.0013 Score=48.96 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=32.0
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||||..|..-|..|.+.|.+|+++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 35799999999999999999999999999998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.00092 Score=51.51 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++++|||+|..|...|..|.+.|++|++||+++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~ 34 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE 34 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence 4799999999999999999999999999998743
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0015 Score=53.66 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
-++|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 47999999999999999999999999999998754
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.17 E-value=0.0016 Score=54.13 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.|+..|..|++.|++|+.+|.++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4799999999999999999999999999998754
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.09 E-value=0.0028 Score=49.97 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 59 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
+.+++||+|||+|..|.++|..|...++ +++|+|.++.
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~ 42 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG 42 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 3457899999999999999998888775 7999997654
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.02 E-value=0.0027 Score=54.41 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
++|+|||+|.+|+-+|..|++.+ .+|+|++++
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G--------------~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKG--------------YSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHCC--------------CCEEEEeCC
Confidence 48999999999999999999876 899999985
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.85 E-value=0.0032 Score=49.07 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCC--CeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~v~lie~~~ 95 (436)
+++||+|||+|..|.++|..|+..+ .+++|+|.++
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 4579999999999999999999877 4799999764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.83 E-value=0.0032 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
-++|.|||+|.-|...|..+++.|++|+++|+++.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 36899999999999999999999999999999754
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=95.78 E-value=0.011 Score=49.47 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|||+|-+|+-+|..|++.+.+++++-+..
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 45899999999999999999999888877665443
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.77 E-value=0.0038 Score=55.58 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
|+|+|||||.+|+-+|..|++.| .+|+|+++.+
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~G--------------~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEKG--------------HQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--------------CEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--------------CCEEEEECCC
Confidence 58999999999999999999755 8999999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.76 E-value=0.012 Score=47.41 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=49.0
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec-ceEEE
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~-~v~~i 309 (436)
++++|||+|..|.-+|..|++.| .+|++++|.+ +..+ .+.+.+...... .....
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G--------------~~V~~~~r~~-------~~~~----~~~~~~~~~~~~~~~~~~ 56 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKG--------------QSVLAWDIDA-------QRIK----EIQDRGAIIAEGPGLAGT 56 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSCH-------HHHH----HHHHHTSEEEESSSCCEE
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CEEEEEECCH-------HHHH----HHHHcCCCchhhhhhhhh
Confidence 48999999999999999999876 8999998852 2222 233334333322 22222
Q ss_pred eCCeEEEcCCcE--EecceEEEecCCCC
Q 013810 310 DSQKLILNDGTE--VPYGLLVWSTGVGP 335 (436)
Q Consensus 310 ~~~~v~~~~g~~--i~~D~vi~a~G~~p 335 (436)
......+.+-.+ -++|++|+++....
T Consensus 57 ~~~~~~~~~~~e~~~~aD~iii~v~~~~ 84 (184)
T d1bg6a2 57 AHPDLLTSDIGLAVKDADVILIVVPAIH 84 (184)
T ss_dssp ECCSEEESCHHHHHTTCSEEEECSCGGG
T ss_pred hhhhhhhhhhHhHhcCCCEEEEEEchhH
Confidence 222223333222 35899999876443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0039 Score=55.85 Aligned_cols=33 Identities=30% Similarity=0.591 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.||+|||+|.+|+-+|..|++.| .+|+|+++.+
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~G--------------~~V~VlEa~~ 38 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSFG--------------MDVTLLEARD 38 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTT--------------CEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--------------CCEEEEeCCC
Confidence 48999999999999999999876 8999999853
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.73 E-value=0.0027 Score=52.00 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+.+|+|||+|.-|.+.|..|++.|++|+|+.+++.
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~ 41 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE 41 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 346899999999999999999999999999998643
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0059 Score=45.70 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=32.4
Q ss_pred CCCCcEEEECCch-----------HHHHHHHhcccCCCeEEEEcCCCc
Q 013810 60 NEKPRVVVLGSGW-----------AGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 60 ~~~~~VvIIGgG~-----------AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...++|+|||+|| ++..|+..|++.|+++++|..++.
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~ 52 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA 52 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence 3458999999986 788999999999999999998865
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.0084 Score=44.24 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCCcEEEECCc-----------hHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSG-----------WAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG-----------~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|+|||+| +++..|+..|++.|+++++|..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence 35789999999 5888999999999999999998764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.39 E-value=0.0058 Score=47.70 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=31.0
Q ss_pred CCCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
+...||.|||+|..|.++|..|...+. ++.|+|..+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence 445799999999999999999988665 799999764
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.32 E-value=0.0097 Score=46.53 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=32.4
Q ss_pred CCCcEEEEC-CchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIG-gG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..++|.||| .|.-|-+.|..|++.|++|+++|+...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 457999999 699999999999999999999998653
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.22 E-value=0.014 Score=43.06 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=49.7
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+++|+|||+|.+|..-|..|.+.+ .+|+++.... .++. .....+.+++++.....
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~g--------------a~v~v~~~~~-----~~~~----~~~~~~~~i~~~~~~~~-- 66 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAG--------------ARLTVNALTF-----IPQF----TVWANEGMLTLVEGPFD-- 66 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT--------------BEEEEEESSC-----CHHH----HHHHTTTSCEEEESSCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccC-----ChHH----HHHHhcCCceeeccCCC--
Confidence 359999999999999999999876 8999987532 2333 33445566777654221
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCC
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
+..-..+++|+.|++-..
T Consensus 67 --------~~dl~~~~lv~~at~d~~ 84 (113)
T d1pjqa1 67 --------ETLLDSCWLAIAATDDDT 84 (113)
T ss_dssp --------GGGGTTCSEEEECCSCHH
T ss_pred --------HHHhCCCcEEeecCCCHH
Confidence 111234788888887654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.20 E-value=0.0075 Score=47.96 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||.|||.|.-|.+.|..|++.|++|+++|+++
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~ 33 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ 33 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence 479999999999999999999999999999874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.15 E-value=0.0084 Score=49.17 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=29.3
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|||.|+.||..|..++ .|++|+.+|.++.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence 47999999999999999887 5999999998754
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.018 Score=42.23 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
...+|.|+|||.=|...|..+.+.|+++.++|+++.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 346899999999999999999999999999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.93 E-value=0.044 Score=42.99 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=64.0
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+.+|+|+|+|..|.+.+.....++ .+|++++.+ ++..+.++..+.. .++.....
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lG--------------A~V~~~D~~-------~~~l~~l~~~~~~-~~~~~~~~---- 85 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLG--------------AQVQIFDIN-------VERLSYLETLFGS-RVELLYSN---- 85 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHHHHHGG-GSEEEECC----
T ss_pred CcEEEEECCChHHHHHHHHHhhCC--------------CEEEEEeCc-------HHHHHHHHHhhcc-cceeehhh----
Confidence 349999999999999999999888 899999875 2344445544433 23332220
Q ss_pred eCCeEEEcCCcEEecceEEEe---cCCCCchhcccCCCCCCCCCcEEeCC------CCC---CCCC-CCEEEecccccc
Q 013810 310 DSQKLILNDGTEVPYGLLVWS---TGVGPSTLVKSLDLPKSPGGRIGIDE------WLR---VPSV-QDVFAVGDCSGY 375 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a---~G~~p~~~~~~~~l~~~~~G~i~vd~------~~~---~t~~-~~Vya~GD~~~~ 375 (436)
.-.+. ...-++|+||-+ +|.++..++.+--++.=+.|-+.||- +++ .|++ .-+|..-++..+
T Consensus 86 ---~~~l~-~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets~ptt~~~p~~~~~gV~~y 160 (168)
T d1pjca1 86 ---SAEIE-TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHY 160 (168)
T ss_dssp ---HHHHH-HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEE
T ss_pred ---hhhHH-HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCccccCCCCcccCCeEEECCEEEE
Confidence 00000 011357888876 44444433322222222345566652 133 1222 237777666653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.009 Score=50.49 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 278 (436)
.|+|||+|.+|+-+|..|++.| .+|+++++.+.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G--------------~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDG--------------KKVLHIDKQDH 39 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEcCCCC
Confidence 5999999999999999999876 89999999653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.78 E-value=0.021 Score=44.92 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.++||.|||+|..|-++|..|...|+ ++.|+|..+
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 35799999999999999999998877 799999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.60 E-value=0.011 Score=47.71 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
++|.|||+|.-|.+.|..|++.|++|+|+.+.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 47999999999999999999999999999763
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.018 Score=39.06 Aligned_cols=34 Identities=26% Similarity=0.185 Sum_probs=31.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|.|+|||-=|-..+....+.|+++.++|+++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5799999999999999999999999999998765
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.54 E-value=0.014 Score=45.04 Aligned_cols=34 Identities=15% Similarity=0.359 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
+||.|||+|..|.++|..|...++ ++.++|..+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~ 36 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence 589999999999999999988665 7999997654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0096 Score=46.49 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.9
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA 275 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~ 275 (436)
+++|+|||||.+|.+-|..|.+.| .+|+++.+
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~G--------------A~VtVvap 44 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTG--------------CKLTLVSP 44 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGT--------------CEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeC
Confidence 469999999999999999999877 99999965
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.42 E-value=0.029 Score=43.94 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.+.+|.|||+|..|.++|+.|...++ ++.|+|..+
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~ 54 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 34689999999999999999998776 799999764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.013 Score=51.54 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~ 278 (436)
.++|||||.+|+-+|..|++.+ .+|+|+++.+.
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g--------------~~V~iiEk~~~ 35 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLN--------------KKVLVIEKRNH 35 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--------------CCEEEECSSSS
T ss_pred cEEEECCcHHHHHHHHHHHhCC--------------CcEEEEECCCC
Confidence 6999999999999999998766 89999998643
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.31 E-value=0.015 Score=45.04 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=29.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
+||.|||+|..|.++|..|...|. +++|+|.++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 689999999999999999988664 799999764
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=94.24 E-value=0.021 Score=43.95 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=28.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~ 96 (436)
.||.|||+|..|.++|..|...+. ++.|+|..+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence 589999999999999999988765 7999997653
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.19 E-value=0.12 Score=42.74 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=28.3
Q ss_pred CCcEEEECCchHHHHHHHhcc--------------------cCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGID--------------------TSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~--------------------~~g~-~v~lie~~~ 95 (436)
.++|+|||+|-.+|=||..|. +.|. +|+++-+..
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg 93 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG 93 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence 479999999999999998775 5666 499998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.02 Score=45.46 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|+|+|+.|+.++..++..|.+|++++.++.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~ 62 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR 62 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence 46799999999999999988889999999998754
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.023 Score=45.28 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|+|+|-|+-+++..|.+.|.+++|+.|..
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 4789999999999999999999999999998863
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.023 Score=46.75 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+++|+|+|| |..|-..+..|.+.|++|+++.|++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS 37 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence 4578999996 9999999999999999999998863
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=93.87 E-value=0.022 Score=45.29 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence 35799999999999999999989999999998743
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.86 E-value=0.024 Score=44.83 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~ 62 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA 62 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence 46799999999999999999889999999998743
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=93.79 E-value=0.023 Score=48.37 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|++|+-+|..|++.+ .+|.|+++.+
T Consensus 6 DViIIGaG~aGl~aA~~la~~G--------------~~V~vlEk~~ 37 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLG--------------KSVTVFDNGK 37 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCC
Confidence 7999999999999999999876 8999999853
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.024 Score=45.13 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
...|+|+|+|+.|+.++..++..|. +|+++|+++.
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~ 62 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT 62 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence 3579999999999999999999998 6999998643
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.72 E-value=0.025 Score=45.78 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.9
Q ss_pred CcEEEE-CCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVL-GSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvII-GgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+||.|| |+|.-|.+.|..|++.|++|+|.+|++
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 469999 669999999999999999999999874
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.72 E-value=0.025 Score=47.21 Aligned_cols=32 Identities=22% Similarity=0.444 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|+.|+.+|..+++.+ .+|.++++..
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G--------------~kV~lie~~~ 38 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLG--------------FNTACVEKRG 38 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEEecC
Confidence 6999999999999999999877 9999999753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.058 Score=43.75 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
++|+|||+|..|..+|..++..| .+|++++++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATG--------------HTVVLVDQT 36 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEECC
Confidence 48999999999999999999876 999999986
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.57 E-value=0.025 Score=45.09 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
|+|+|||+|.+|..+|..|++.+ .+|++++|.
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g--------------~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSG--------------IKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTT--------------CEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEECC
Confidence 58999999999999999998755 899999996
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.032 Score=39.32 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=48.5
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
+|+|+|+|.|-+|..+|..|.+.+ .+|++.+........ + .++ .++.++.+...
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g--------------~~v~~~D~~~~~~~~-----~----~~~-~~~~~~~~~~~-- 58 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARG--------------VTPRVMDTRMTPPGL-----D----KLP-EAVERHTGSLN-- 58 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESSSSCTTG-----G----GSC-TTSCEEESBCC--
T ss_pred CCEEEEEeECHHHHHHHHHHHHCC--------------CEEEEeeCCcCchhH-----H----HHh-hccceeecccc--
Confidence 468999999999999999999876 899999975321111 1 111 23444433110
Q ss_pred eCCeEEEcCCcEEecceEEEecCCCCc
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
+...-.+|+||+++|..++
T Consensus 59 --------~~~~~~~d~vi~SPGi~~~ 77 (93)
T d2jfga1 59 --------DEWLMAADLIVASPGIALA 77 (93)
T ss_dssp --------HHHHHHCSEEEECTTSCTT
T ss_pred --------hhhhccCCEEEECCCCCCC
Confidence 0011357999999999887
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.034 Score=43.28 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
-+++|+|.|.-|...+..|.+.|.+|++||..+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 479999999999999999999999999999864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.34 E-value=0.03 Score=46.48 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=28.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|+.|+.+|..+++.+ .+|.++++.
T Consensus 5 DviIIGgGpAGl~aA~~aar~G--------------~~V~viE~~ 35 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLG--------------LKTALIEKY 35 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHT--------------CCEEEEECC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 5999999999999999999987 899999974
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.29 E-value=0.033 Score=42.93 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=28.9
Q ss_pred CcEEEECC-chHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGg-G~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
+||.|||+ |..|.++|..|...++ ++.|+|..+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence 47999996 9999999999998885 799999764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.22 E-value=0.039 Score=42.38 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~ 96 (436)
+||.|||+|..|.++|..|...+. +++|+|.++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~ 36 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence 479999999999999999988764 7999997654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.16 E-value=0.041 Score=42.29 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=29.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
.||.|||+|..|.++|..|...++ ++.|+|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 579999999999999999988776 799999764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=92.98 E-value=0.038 Score=43.77 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
.++|+|+|+|-++-+++..|.+.|. +++|+.|+.
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4789999999999999999999997 699998863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.88 E-value=0.15 Score=38.21 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=46.8
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~ 311 (436)
+|+|+|+|..|..+|..|.+.+ .+|++++.+ ++..+.+. .+.++.++.+...+.+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g--------------~~v~vid~d-------~~~~~~~~---~~~~~~vi~Gd~~~~~- 56 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKG--------------HDIVLIDID-------KDICKKAS---AEIDALVINGDCTKIK- 56 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEEESC-------HHHHHHHH---HHCSSEEEESCTTSHH-
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CCcceecCC-------hhhhhhhh---hhhhhhhccCcccchh-
Confidence 7999999999999999998766 899999875 23333222 2346776654211000
Q ss_pred CeEEEcCCcEEecceEEEecCCCC
Q 013810 312 QKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+..-..-.+|.++.+++...
T Consensus 57 ---~l~~~~i~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 57 ---TLEDAGIEDADMYIAVTGKEE 77 (132)
T ss_dssp ---HHHHTTTTTCSEEEECCSCHH
T ss_pred ---hhhhcChhhhhhhcccCCcHH
Confidence 000001124788888776543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.80 E-value=0.04 Score=44.23 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
..+|+|+|+|+.|+.++..++..|. +|+++|+++.
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCEEEEECCCccchhheecccccccccccccccccc
Confidence 3689999999999999999999998 6999998654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.79 E-value=0.071 Score=42.93 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
-++|+|||+|.+|..+|..++..| .+|++++++
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G--------------~~V~l~D~~ 36 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKG--------------TPILMKDIN 36 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEECC
Confidence 358999999999999999998766 999999985
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.053 Score=42.87 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|+|+|+.|+.++..++..|.++++++..+
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 4689999999999999999888999998888764
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.57 E-value=0.052 Score=40.67 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.2
Q ss_pred CCcEEEECCchHHHHHHHhccc-CCCe-EEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDT-SLYD-VVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~-~g~~-v~lie~~~~ 96 (436)
+++|+|+|||-+|.+.+.++.+ .+++ +..||.++.
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~ 39 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE 39 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence 4689999999999999988864 5777 567786654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.56 E-value=0.049 Score=43.40 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.1
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
...|+|+|+|+.|+.++..++..|. +|+++|+++
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence 4579999999999999999999997 699999864
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=92.50 E-value=0.065 Score=47.58 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||||++|+-+|..|++... .+.+.+|+|+++.+
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~---------~~~G~~v~vlEr~~ 45 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVR---------QKPDLKVRIIDKRS 45 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHH---------HSTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHhccc---------ccCCCcEEEEcCCC
Confidence 69999999999999999986431 02458999999853
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.45 E-value=0.049 Score=42.83 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|-|||-|.-|...|..|.+.|++|.++|+++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~ 35 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS 35 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence 5799999999999999999999999999998743
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=92.42 E-value=0.048 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|-|||-|.-|...|..|.+.|++|+++|+++.
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~ 34 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE 34 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 4699999999999999999999999999998743
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.37 E-value=0.048 Score=41.85 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=28.8
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~~ 96 (436)
+||.|||+|..|.++|..|...+. ++.|+|.++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~ 36 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED 36 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence 479999999999999999987664 6999997643
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=92.36 E-value=0.046 Score=47.17 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=28.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|++|+.+|..|++. .+.+|+++++.+
T Consensus 35 DViVIGaGpaGL~aA~~LA~~-------------~G~~V~vlE~~~ 67 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKN-------------PNVQVAIIEQSV 67 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTS-------------TTSCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHHc-------------cCCeEEEEecCC
Confidence 699999999999999999852 139999999853
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.27 E-value=0.068 Score=41.36 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.2
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
+.||.|||+|..|.++|..|.+.+. ++.|+|.++.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~ 38 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN 38 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 3689999999999999998877665 6999997653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=0.2 Score=39.43 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=46.2
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~ 308 (436)
++++|+|+|+|-+|--++..|.+.+ .+|+++.|.. +-.+.+.+.+...+. +..
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g--------------~~i~I~nRt~-------~ka~~l~~~~~~~~~------~~~ 69 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLD--------------CAVTITNRTV-------SRAEELAKLFAHTGS------IQA 69 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSH-------HHHHHHHHHTGGGSS------EEE
T ss_pred CCCEEEEECCcHHHHHHHHHhcccc--------------eEEEeccchH-------HHHHHHHHHHhhccc------ccc
Confidence 3469999999999999999998766 6899998852 333444444444321 111
Q ss_pred EeCCeEEEcCCcEEecceEEEecCC
Q 013810 309 VDSQKLILNDGTEVPYGLLVWSTGV 333 (436)
Q Consensus 309 i~~~~v~~~~g~~i~~D~vi~a~G~ 333 (436)
+. ..+-....+|+||-||..
T Consensus 70 ~~-----~~~~~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 70 LS-----MDELEGHEFDLIINATSS 89 (170)
T ss_dssp CC-----SGGGTTCCCSEEEECCSC
T ss_pred cc-----cccccccccceeeccccc
Confidence 11 111112458999998754
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.14 E-value=0.055 Score=41.98 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
+||.|||.|..|...|..|++.|++|+++++.+.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 4799999999999999999999999999987643
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.12 E-value=0.059 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=27.8
Q ss_pred cEEEECC-chHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 64 RVVVLGS-GWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 64 ~VvIIGg-G~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
||+|||| |..|.++|..|...++ +++|+|.++
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~ 36 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH 36 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence 7999996 9999999999998776 599998753
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.00 E-value=0.33 Score=37.11 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=28.1
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+++|+|||+|.+|..+|..|...+ -..++.|++..
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~------------l~~el~L~Di~ 40 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQG------------IADEIVLIDAN 40 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcC------------CCceEEEEeec
Confidence 458999999999999999998643 12589999864
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=91.97 E-value=0.065 Score=41.99 Aligned_cols=32 Identities=19% Similarity=0.048 Sum_probs=29.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
||+|||+|.+|.-+|..|++.+ .+|+++.|.+
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G--------------~~V~~~~r~~ 33 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQG--------------HEVQGWLRVP 33 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSC
T ss_pred EEEEECcCHHHHHHHHHHHHCC--------------CceEEEEcCH
Confidence 7999999999999999999876 8999999853
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.97 E-value=0.057 Score=41.28 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=28.2
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
+||.|||+|..|.++|..|...+. ++.|+|.++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK 35 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence 479999999999999999987654 799999764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.97 E-value=0.069 Score=42.20 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=29.0
Q ss_pred CcEEEECCchHHHHHHHhcccCCC--eEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~--~v~lie~~~ 95 (436)
++|.|||.|.-|-+.|+.|++.|+ +|+.+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 579999999999999999999886 688888864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=91.82 E-value=0.059 Score=46.52 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=32.5
Q ss_pred CCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.++||+|+|| |+-|-..+..|.+.|++|+++++.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence 3588999998 99999999999999999999998754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.73 E-value=0.082 Score=42.03 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~~ 96 (436)
...|+|+|+|+-|+.++..++..|.+ |++.|.++.
T Consensus 29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 64 (174)
T d1e3ia2 29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE 64 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence 35799999999999999999999984 777887643
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.65 E-value=0.064 Score=42.22 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=30.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
..+|+|+|+|+.|+.++..++..|.+|++++.++.
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~ 62 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE 62 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence 36799999999999999999999999999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=91.47 E-value=0.15 Score=38.18 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=48.5
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEe
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~ 310 (436)
|+++|+|.|..|..+|..|.+.+ .+|++++.+ ++..+ .+.+.+..++.+..++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g--------------~~vvvid~d-------~~~~~----~~~~~~~~~~~gd~~~-- 53 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMG--------------HEVLAVDIN-------EEKVN----AYASYATHAVIANATE-- 53 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--------------CCCEEEESC-------HHHHH----HTTTTCSEEEECCTTC--
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CeEEEecCc-------HHHHH----HHHHhCCcceeeeccc--
Confidence 37999999999999999999876 899999875 23222 3455666555431100
Q ss_pred CCeEEEcCCcEEecceEEEecCCCCc
Q 013810 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (436)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (436)
.. + +.+-.--.+|.++++++-...
T Consensus 54 ~~-~-l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 54 EN-E-LLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp TT-H-HHHHTGGGCSEEEECCCSCHH
T ss_pred ch-h-hhccCCccccEEEEEcCchHH
Confidence 00 0 000011358999998886543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.43 E-value=0.07 Score=46.30 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 61 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++.||+|+|| |..|...+..|.+.|++|+++.++..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 3567999997 99999999999999999999988643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.00 E-value=0.09 Score=41.09 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
..++|+|||+|-.|-.+|..|...|. +++|+.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 34789999999999999999999998 59999876
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.97 E-value=0.085 Score=41.98 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
.+|-|||-|.-|...|..|.+.|++|+++|+++.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 5799999999999999999999999999998754
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=90.92 E-value=0.096 Score=41.93 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
.++|+|+|+|-+|-+++..|.+.|. +++|+.+.+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~ 53 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 53 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence 4789999999999999999999887 5899988643
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=90.83 E-value=0.11 Score=36.73 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCCcEEEECCchHHHHH-HHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGSGWAGCRL-MKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGgG~AGl~a-A~~L~~~g~~v~lie~~~ 95 (436)
...+++-+||-|=+|+++ |..|.+.|++|+--|...
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 345889999999999998 999999999999998763
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.65 E-value=0.099 Score=41.61 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=30.1
Q ss_pred CcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
..|+|+|+|+.|+.++..++..|. +|+++|.++.
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence 469999999999999999999985 7999998754
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.62 E-value=0.1 Score=46.64 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=31.5
Q ss_pred CCCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 60 NEKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 60 ~~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++++|+|.|| |+-|-..+..|.+.|++|+++|...
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 35678999996 9999999999999999999998643
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.11 Score=45.51 Aligned_cols=52 Identities=10% Similarity=-0.054 Sum_probs=36.0
Q ss_pred EEeCCCCCCCCCCCEEEeccccccccCCCCccCCccHHHHHHHHHHHHhhhhhhc
Q 013810 352 IGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVSYEQLHLFQKPSFLLA 406 (436)
Q Consensus 352 i~vd~~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 406 (436)
+.++...+ ++.|++|++||+++... +.+..-.....++..|+.||+.|....
T Consensus 258 iv~~~~~~-~~~pgl~~~Gdaa~~v~--g~~r~G~t~g~m~~sG~~aA~~i~~~l 309 (311)
T d2gjca1 258 VVIHSGAY-AGVDNMYFAGMEVAELD--GLNRMGPTFGAMALSGVHAAEQILKHF 309 (311)
T ss_dssp HHHHCEEC-TTSTTEEECTHHHHHHH--TCCBCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcE-EccCCEEEEeeecCccc--CcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566 78999999999876321 111223456778899999999997653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.54 E-value=0.099 Score=42.39 Aligned_cols=34 Identities=18% Similarity=0.026 Sum_probs=28.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
...|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~ 60 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP 60 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence 4689999999999999999887776 688888764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=90.38 E-value=0.11 Score=46.55 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|..|+-+|..|++.+ .+|.+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAG--------------VQTLMLEMG 34 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEEESS
T ss_pred eEEEeCcCHHHHHHHHHHHHCc--------------CeEEEEecC
Confidence 5999999999999999999865 999999995
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.31 E-value=0.14 Score=40.70 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
..++|+|+|+|-++-+++..|.+.+ +|+|+.|.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~ 49 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 49 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence 3478999999999999999998877 89999886
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.11 Score=40.52 Aligned_cols=34 Identities=18% Similarity=0.045 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+.|+|||-|..|-.+|..|+..|.+|+++|..+
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence 4789999999999999999999999999999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=90.17 E-value=0.1 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++|-|||-|.-|...|..|.+.|++|.++|+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 479999999999999999999999999999864
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=89.95 E-value=0.14 Score=45.61 Aligned_cols=32 Identities=31% Similarity=0.585 Sum_probs=29.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.++|||+|..|+-+|..|++.+ .+|.+++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G--------------~kVlvLEaG~ 37 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAG--------------YKVAMFDIGE 37 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSSC
T ss_pred cEEEECcCHHHHHHHHHHhhCC--------------CeEEEEecCC
Confidence 5999999999999999999865 9999999863
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.92 E-value=0.11 Score=44.37 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=30.9
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
++||+|.|| |+.|-..+..|...|++|+.+++++
T Consensus 1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 367999998 9999999999999999999999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.85 E-value=0.095 Score=41.50 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|+|+|-|+-+++..|.+.+.+|+|+.|+.
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~ 51 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF 51 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence 4789999999999999999988778899998863
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.098 Score=44.15 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
+.+|+|||+|--|..+|..|++.|. +++|+|...
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 3689999999999999999999998 599999753
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=89.77 E-value=0.1 Score=46.89 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.4
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|..|+-+|..|++.+ .+|.+++++
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG--------------~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAG--------------IPTQIVEMG 39 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CeEEEEeCC
Confidence 6999999999999999999865 899999985
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=89.64 E-value=0.098 Score=46.17 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|++|+-.|..+++.+ .+|.|++..+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G--------------~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKG--------------LSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTT--------------CCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CCEEEEecCC
Confidence 5999999999999999999766 8999998753
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.52 Score=36.05 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=50.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEEeC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDS 311 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i~~ 311 (436)
+++|+|.|..|..++..|.+.+ .+|++++.++ +......+.+...|+.++.+...+.+
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~--------------~~v~vId~d~-------~~~~~~~~~~~~~~~~vi~Gd~~d~~- 62 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRG--------------QNVTVISNLP-------EDDIKQLEQRLGDNADVIPGDSNDSS- 62 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--------------CCEEEEECCC-------HHHHHHHHHHHCTTCEEEESCTTSHH-
T ss_pred EEEEECCCHHHHHHHHHHHHcC--------------CCEEEEeccc-------hhHHHHHHHhhcCCcEEEEccCcchH-
Confidence 8999999999999999998765 8899998752 22233333445568888766211100
Q ss_pred CeEEEcCCcEEecceEEEecCCCC
Q 013810 312 QKLILNDGTEVPYGLLVWSTGVGP 335 (436)
Q Consensus 312 ~~v~~~~g~~i~~D~vi~a~G~~p 335 (436)
.+..-.--.+|.+|.+++...
T Consensus 63 ---~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 63 ---VLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp ---HHHHHTTTTCSEEEECSSCHH
T ss_pred ---HHHHhccccCCEEEEccccHH
Confidence 000000124889998887644
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.60 E-value=0.033 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEECCChHHHHHHHHHHHHH
Q 013810 232 HCVVVGGGPTGVEFSGELSDFI 253 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~ 253 (436)
||+|||+|.+|+-.|..|++.+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G 23 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERY 23 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH
T ss_pred EEEEECchHHHHHHHHHHHHCC
Confidence 7999999999999999999877
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.44 E-value=0.16 Score=40.17 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=29.9
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
...|+|+|+|+.|+.++..++..|. +|+++|.++.
T Consensus 28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~ 63 (174)
T d1p0fa2 28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD 63 (174)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence 3579999999999999999999886 5888887643
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=89.39 E-value=0.15 Score=40.99 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCcEEEEC-CchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLG-SGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIG-gG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|.| +|-.|..+|..|++.|.+|++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 458899999 59999999999999999999999874
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=88.85 E-value=0.13 Score=39.83 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=32.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.+++||+|=|..|-.+|..|+..|.+|+|.|.++
T Consensus 23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP 56 (163)
T d1v8ba1 23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDP 56 (163)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred CCEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence 4789999999999999999999999999999875
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.66 E-value=0.42 Score=37.55 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=45.7
Q ss_pred ccCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEE
Q 013810 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKD 308 (436)
Q Consensus 229 ~~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~ 308 (436)
++++|+|+|+|-++--++..|.+.+ .+|+++.|.. +-.+.+.+.+...+ . +..
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~--------------~~i~I~nR~~-------~~a~~l~~~~~~~~-~-----~~~ 69 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQ--------------QNIVLANRTF-------SKTKELAERFQPYG-N-----IQA 69 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTT--------------CEEEEEESSH-------HHHHHHHHHHGGGS-C-----EEE
T ss_pred CCCEEEEECCcHHHHHHHHHHcccC--------------ceeeeccchH-------HHHHHHHHHHhhcc-c-----cch
Confidence 3458999999999988888877533 7999999862 33444444454332 1 111
Q ss_pred EeCCeEEEcCCcEEecceEEEecCCC
Q 013810 309 VDSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 309 i~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
+.. .+.....+|++|-|+...
T Consensus 70 ~~~-----~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 70 VSM-----DSIPLQTYDLVINATSAG 90 (171)
T ss_dssp EEG-----GGCCCSCCSEEEECCCC-
T ss_pred hhh-----ccccccccceeeeccccc
Confidence 111 111224589999998753
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=88.48 E-value=0.18 Score=37.61 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=26.5
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~ 96 (436)
++|+|+|.|..|...+..|+ +.+|++||.++.
T Consensus 1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~ 32 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN 32 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence 47999999999999999996 456788887643
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.46 E-value=0.23 Score=38.25 Aligned_cols=32 Identities=13% Similarity=0.371 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+||.|||+|--|-+.|..|.+.++++++.++.
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~ 32 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSS 32 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence 47999999999999999999999999999876
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.91 E-value=0.28 Score=43.34 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.3
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|+.|+-.|..+++.+ .+.+.+|.|+++.
T Consensus 23 DVlIIG~G~AGl~AA~~aa~~~----------~~~G~~V~vieK~ 57 (356)
T d1jnra2 23 DILIIGGGFSGCGAAYEAAYWA----------KLGGLKVTLVEKA 57 (356)
T ss_dssp SEEEECCSHHHHHHHHHHHHHH----------TTTTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHHH----------HhCcCEEEEEeCC
Confidence 6999999999999999998765 1346899999974
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.84 E-value=0.19 Score=39.66 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCeE-EEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYDV-VCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~v-~lie~~~ 95 (436)
..+|+|+|+|+.|+.++..++..|.++ ++.|.++
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~ 63 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE 63 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred CCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence 467999999999999999998888864 5566543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=87.60 E-value=0.24 Score=39.01 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
...|+|+|+|+.|+.++..++..+. +|+.+|+.+.
T Consensus 29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~ 64 (175)
T d1cdoa2 29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD 64 (175)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence 3569999999999999999988776 5888887653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=87.60 E-value=0.22 Score=37.86 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=26.9
Q ss_pred cEEEEC-CchHHHHHHHhcccCCC--eEEEEcCC
Q 013810 64 RVVVLG-SGWAGCRLMKGIDTSLY--DVVCVSPR 94 (436)
Q Consensus 64 ~VvIIG-gG~AGl~aA~~L~~~g~--~v~lie~~ 94 (436)
||.||| +|..|-++|..|...++ ++.|+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence 799999 69999999999988765 69999853
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.56 E-value=0.3 Score=40.98 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.3
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.+|+|+|.|-+|.++|..|++.|. .+++|++.+.
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gv-------------g~i~lvD~D~ 64 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGV-------------GNLTLLDFDT 64 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-------------SEEEEECCCB
T ss_pred CCEEEECCCHHHHHHHHHHHHcCC-------------CeEEEECCcc
Confidence 499999999999999999999883 6999998763
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=87.50 E-value=0.16 Score=40.77 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|..|.-+|..|++.+ .+|+++.|+
T Consensus 9 KI~ViGaG~wGtAlA~~La~~g--------------~~V~l~~r~ 39 (189)
T d1n1ea2 9 KAVVFGSGAFGTALAMVLSKKC--------------REVCVWHMN 39 (189)
T ss_dssp EEEEECCSHHHHHHHHHHHTTE--------------EEEEEECSC
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CeEEEEEec
Confidence 7999999999999999998754 799999875
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.14 E-value=0.25 Score=40.85 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCcEEEECCchHHHHHHHhcccC--------------------CC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTS--------------------LY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~--------------------g~-~v~lie~~~ 95 (436)
.++|+|||+|-.+|=||..|.+. |. +|++|.+..
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg 93 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG 93 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence 47999999999999999999873 54 599998764
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=0.26 Score=37.60 Aligned_cols=32 Identities=28% Similarity=0.220 Sum_probs=25.9
Q ss_pred CcEEEEC-CchHHHHHHHhccc---CCCeEEEEcCC
Q 013810 63 PRVVVLG-SGWAGCRLMKGIDT---SLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIG-gG~AGl~aA~~L~~---~g~~v~lie~~ 94 (436)
+||.||| +|..|-++|..|.. ...++.|+|..
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 4799999 59999999998853 24579999864
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=86.79 E-value=0.26 Score=40.39 Aligned_cols=34 Identities=35% Similarity=0.377 Sum_probs=29.3
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCC-eEEEEcCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPR 94 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~ 94 (436)
...+||+.|+|.||+..|..+.+.+. ++.++|+.
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~ 59 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 59 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence 34789999999999999999988666 48999976
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=86.41 E-value=0.26 Score=37.86 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.8
Q ss_pred CcEEEECCchHHHHHHHhcccCC-CeEEEEcCCC
Q 013810 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRN 95 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~L~~~g-~~v~lie~~~ 95 (436)
++|.+||+|.-|-+.|..|.+.| +++.++++++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 47999999999999999987766 8899998874
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=86.35 E-value=0.24 Score=43.62 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=29.1
Q ss_pred CcEEEECC-chHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
++|+|+|| |+-|-..+..|.+.|++|+++|+-
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~ 33 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL 33 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence 46999998 999999999999999999999863
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.32 E-value=0.26 Score=42.90 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSP 93 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~ 93 (436)
+++|+|.|| |+-|-..+.+|.+.|++|+.+++
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 478999998 99999999999999999999985
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=86.23 E-value=0.75 Score=39.22 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=39.5
Q ss_pred cEEEECC-ChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEec
Q 013810 232 HCVVVGG-GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG 304 (436)
Q Consensus 232 ~vvViG~-G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~ 304 (436)
||+|.|| |.+|..++..|.+.| .+|+.+.|+..... .. .......+...+++++.+
T Consensus 5 KILVtGatG~iG~~l~~~L~~~G--------------~~V~~~~R~~~~~~--~~-~~~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 5 RVLIVGGTGYIGKRIVNASISLG--------------HPTYVLFRPEVVSN--ID-KVQMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CEEEESTTSTTHHHHHHHHHHTT--------------CCEEEECCSCCSSC--HH-HHHHHHHHHTTTCEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHhCC--------------CEEEEEECCCcccc--hh-HHHHHhhhccCCcEEEEe
Confidence 7999996 999999999998765 89999998643221 11 122334556677887754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.03 E-value=0.41 Score=37.62 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=29.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCCc
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNH 96 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~~ 96 (436)
...|+|+|+|..|+.++..++..|. +|++++.++.
T Consensus 29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence 3569999999999999999999875 7888887643
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=85.78 E-value=0.33 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
+++.|+|+|| |.-|-+.+..|.+.|++|+++-|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence 4688999997 9999999999999999999997753
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=85.55 E-value=0.41 Score=39.62 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=27.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.|+|||+|+.|+.+|..+++++ .+.|.+++...
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g-------------~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLH-------------KKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHH-------------CCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEEEec
Confidence 5999999999999999999877 14688998753
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.32 E-value=0.71 Score=37.19 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|.|||.|.+|+-+|..|++.| .+|+.++.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g--------------~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARG--------------HEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCC--------------CcEEEEeCC
Confidence 6999999999999999999876 899999874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.30 E-value=0.36 Score=38.29 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|+|||+|..|.-+|..|++-+ .+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g--------------~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNG--------------NEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHC--------------CEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCC--------------CEEEEEEec
Confidence 7999999999999999999765 899999763
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=85.11 E-value=0.34 Score=42.72 Aligned_cols=34 Identities=29% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
.++|+|.|| |+-|...+..|.+.|++|..+++..
T Consensus 8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~ 42 (356)
T d1rkxa_ 8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA 42 (356)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 489999995 8999999999999999999998754
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=84.89 E-value=1.6 Score=33.10 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=26.2
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
+|.+||+|..|.-++..|.+.+ ..+|++.+|+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~-------------~~~i~v~~r~ 33 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQG-------------GYRIYIANRG 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-------------SCEEEEECSS
T ss_pred EEEEEcCcHHHHHHHHHHHHCC-------------CCcEEEEeCC
Confidence 6999999999999998887543 2688888775
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=84.89 E-value=0.28 Score=38.52 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
...|+|+|+|+.|+.++..++..|. .|+++|+++
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~ 67 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 67 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence 3579999999999999999988776 567777764
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.24 E-value=0.82 Score=36.11 Aligned_cols=35 Identities=29% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|.|||.|..|-..|..+...|.+|..+|+..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 35789999999999999999999999999998753
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=83.95 E-value=0.62 Score=35.40 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=28.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.+|+|||+|.+|..+|..|+..+ -..++.|++..
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~------------~~~elvL~D~~ 39 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQG------------IAEEFVIVDVV 39 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHhcC------------CCcEEEEeecc
Confidence 38999999999999999998754 12589999874
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=83.88 E-value=0.51 Score=38.09 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCC
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..++|+|-|-|-.|..+|..|.+.|.+|++.|.+.
T Consensus 26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~ 60 (201)
T d1c1da1 26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDT 60 (201)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchH
Confidence 34789999999999999999999999999998753
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.60 E-value=0.43 Score=44.06 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=35.4
Q ss_pred CCCcEEEECCchHHHHHHHhcccCCCeEEEEcCCCccee
Q 013810 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (436)
Q Consensus 61 ~~~~VvIIGgG~AGl~aA~~L~~~g~~v~lie~~~~~~~ 99 (436)
..+||||+|-|..=.-.|..|++.|.+|+=+|++++.+.
T Consensus 5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg 43 (491)
T d1vg0a1 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG 43 (491)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCC
Confidence 358999999999999999999999999999999988644
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=83.34 E-value=0.37 Score=42.91 Aligned_cols=31 Identities=32% Similarity=0.527 Sum_probs=27.7
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.++|||+|..|+-+|..|++.+ .+|.|++++
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g--------------~~VlvLEaG 34 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAG--------------KKVLLLERG 34 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHhhCC--------------CeEEEEEcc
Confidence 5899999999999999999755 899999985
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.03 E-value=0.42 Score=39.29 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=26.9
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.|+|||+|+.|+.+|..+++.+ .+.|.+++..
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g-------------~k~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLY-------------KKRVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTS-------------CCCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHHHcC-------------CCEEEEEEee
Confidence 5999999999999999999765 2578888864
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.97 E-value=0.4 Score=43.76 Aligned_cols=34 Identities=26% Similarity=0.555 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
..||+|||+|--|..+|..|++.|+ +++|+|...
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 3689999999999999999999998 599999753
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.66 E-value=0.27 Score=37.92 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred CCcEEEECC-chHHHHHHHhcccCC-------CeEEEEcCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSL-------YDVVCVSPR 94 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g-------~~v~lie~~ 94 (436)
..||.|||| |..|.++|..|...+ .+..++|..
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~ 43 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT 43 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence 368999996 999999999987533 246777654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.39 E-value=1.2 Score=31.92 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=28.9
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
.+|.|+|||..|..+|.+..++| .++.++++++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG--------------~~v~v~d~~~ 44 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLG--------------VEVIAVDRYA 44 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTT--------------CEEEEEESST
T ss_pred CEEEEEeCCHHHHHHHHHHHHCC--------------CEEEEEcCCC
Confidence 37999999999999999988877 9999999853
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=82.37 E-value=0.76 Score=34.88 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
|+|+|||+|.+|..+|..|...+ -..++.|++..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~------------~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQG------------VADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT------------CCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcC------------CCceEEEEecc
Confidence 48999999999999999888643 12588888764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=82.28 E-value=0.62 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=28.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
+|.|+|+|-.|--++.+-..+| .++.+++.+.
T Consensus 3 ~vgIlG~GQLgrMl~~Aa~~LG--------------~~v~vldp~~ 34 (78)
T d3etja2 3 QVCVLGNGQLGRMLRQAGEPLG--------------IAVWPVGLDA 34 (78)
T ss_dssp EEEEEBCSHHHHHHHHHHGGGT--------------EEEEEECTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHcC--------------CEEEEEcCCC
Confidence 8999999999999999988887 9999998753
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.25 E-value=1.1 Score=35.18 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=27.7
Q ss_pred cEEEE-CCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVV-GGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvVi-G~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
||+|| |+|.+|..+|..|++.| .+|++..|+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G--------------~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLG--------------HEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT--------------CEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence 68999 67999999999999876 999999985
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.11 E-value=0.55 Score=36.78 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=28.6
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|+|| |+.|+.+..-++..|++|+.+..++
T Consensus 29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~ 63 (174)
T d1yb5a2 29 GESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 63 (174)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCEEEEEeccccccccccccccccCcccccccccc
Confidence 357999996 9999999888888999988887543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.10 E-value=0.48 Score=41.67 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=29.5
Q ss_pred CcEEEECC-chHHHHHHHhcccCCCeEEEEcCC
Q 013810 63 PRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPR 94 (436)
Q Consensus 63 ~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~ 94 (436)
+||+|.|| |+.|-..+..|.+.|++|+++|.-
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~ 35 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF 35 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence 68999997 999999999999999999999863
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=81.96 E-value=0.76 Score=36.19 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 231 ~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.+|+|+|+|..|...+.....+| .+|++++.+
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lG--------------A~V~v~D~~ 61 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLG--------------AVVMATDVR 61 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred cEEEEEcCcHHHHHHHHHHHHcC--------------CEEEEEecc
Confidence 48999999999999999999887 899999875
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=81.86 E-value=0.7 Score=35.45 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=26.4
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
.++|+|||+|.+|..+|..|+..+ -.++.|++..
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~-------------~~el~L~D~~ 40 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRE-------------LADVVLYDVV 40 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHT-------------CCEEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------------CceEEEEEec
Confidence 358999999999999988776533 1488888764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.47 E-value=0.66 Score=36.07 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.6
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCC-eEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLY-DVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~-~v~lie~~~ 95 (436)
..+|+|+|+ |+.|+.++..++..|. +|+++++++
T Consensus 28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~ 63 (170)
T d1jvba2 28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 63 (170)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCEEEEEeccccceeeeeecccccccccccccccch
Confidence 357999995 9999999999888785 788998764
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=81.23 E-value=0.67 Score=35.82 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 232 ~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
||.|||.|..|.-+|..|.+.+ .+|+.++|.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g--------------~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRG--------------HYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--------------CEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCC--------------CEEEEEECC
Confidence 6999999999999999998765 899998875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=81.10 E-value=0.77 Score=35.43 Aligned_cols=72 Identities=19% Similarity=0.101 Sum_probs=45.8
Q ss_pred cCcEEEECCChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCCCCCcccHHHHHHHHHHHHhcCCEEEecceEEE
Q 013810 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (436)
Q Consensus 230 ~~~vvViG~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~~l~~~~~~~~~~~~~~l~~~gV~i~~~~v~~i 309 (436)
.++++|||+|.+|..++..|...+ ..+++++.|.. +...+..++.|.+...- .++
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g-------------~~~i~v~nRt~----------~ka~~l~~~~~~~~~~~--~~~ 78 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRG-------------VRAVLVANRTY----------ERAVELARDLGGEAVRF--DEL 78 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHC-------------CSEEEEECSSH----------HHHHHHHHHHTCEECCG--GGH
T ss_pred cCeEEEECCCHHHHHHHHHHHhcC-------------CcEEEEEcCcH----------HHHHHHHHhhhcccccc--hhH
Confidence 358999999999999999998765 15799998852 12233344445443211 000
Q ss_pred eCCeEEEcCCcEEecceEEEecCCC
Q 013810 310 DSQKLILNDGTEVPYGLLVWSTGVG 334 (436)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (436)
. ..--++|.||.||+..
T Consensus 79 ~--------~~l~~~Divi~atss~ 95 (159)
T d1gpja2 79 V--------DHLARSDVVVSATAAP 95 (159)
T ss_dssp H--------HHHHTCSEEEECCSSS
T ss_pred H--------HHhccCCEEEEecCCC
Confidence 0 0113689999999853
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.94 E-value=0.4 Score=39.24 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=26.5
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEc
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVS 92 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie 92 (436)
+++|+|.|| |..|...+..|.+.|++|++++
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~ 34 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG 34 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence 478999996 9999999999999998765553
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=80.75 E-value=0.68 Score=36.22 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=24.6
Q ss_pred CcEEEECCchHHHHHHHh--cc-c---CCCeEEEEcCCCc
Q 013810 63 PRVVVLGSGWAGCRLMKG--ID-T---SLYDVVCVSPRNH 96 (436)
Q Consensus 63 ~~VvIIGgG~AGl~aA~~--L~-~---~g~~v~lie~~~~ 96 (436)
+||+|||||-.|.+.+.. |. . .+.+++|+|.++.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~ 42 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE 42 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence 689999999999775542 22 2 2458999998743
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.56 E-value=1.4 Score=34.98 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.3
Q ss_pred ccCcEEEEC-CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCC
Q 013810 229 RLLHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (436)
Q Consensus 229 ~~~~vvViG-~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~ 276 (436)
++|+++|.| +|-+|.++|..|++.| .+|+++.|.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G--------------~~V~~~~r~ 56 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEG--------------AEVVLCGRK 56 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT--------------CEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhc--------------cchhhcccc
Confidence 346899998 6899999999999876 899999986
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=80.06 E-value=0.69 Score=35.21 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=28.8
Q ss_pred CcEEEEC-CChHHHHHHHHHHHHHHHHHHhhhcCCCCccEEEEEeCCC
Q 013810 231 LHCVVVG-GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (436)
Q Consensus 231 ~~vvViG-~G~~g~e~A~~l~~~~~~~~~~~~~~~~~~~~V~lv~~~~ 277 (436)
++|+||| .|..|.-+|..|.+.+ .+|+++++..
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G--------------~~V~~~d~~~ 43 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASG--------------YPISILDRED 43 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTT--------------CCEEEECTTC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcC--------------CCcEeccccc
Confidence 4899999 6999999999998765 8999998853
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.05 E-value=0.76 Score=35.85 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCcEEEECCchHHHHHHHhcccCCCe-EEEEcCCC
Q 013810 62 KPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGgG~AGl~aA~~L~~~g~~-v~lie~~~ 95 (436)
...|+|+|+|..|+.++..++..|.+ |++++.++
T Consensus 29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~ 63 (176)
T d2fzwa2 29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK 63 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence 35799999999999999999999865 66676654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=80.02 E-value=0.64 Score=36.33 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=28.6
Q ss_pred CCcEEEECC-chHHHHHHHhcccCCCeEEEEcCCC
Q 013810 62 KPRVVVLGS-GWAGCRLMKGIDTSLYDVVCVSPRN 95 (436)
Q Consensus 62 ~~~VvIIGg-G~AGl~aA~~L~~~g~~v~lie~~~ 95 (436)
..+|+|.|| |+.|+.+...++..|.+|+.++.++
T Consensus 28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~ 62 (171)
T d1iz0a2 28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 62 (171)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence 357999896 9999999888888999998887654
|