Citrus Sinensis ID: 013832

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSDI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEccccccEEccccccEEEEEccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccccEEEcccccEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEccccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHHHccccccccccccccccccEEccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEHHHHHHHHHHccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHcccccccccccccccccEEEcEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEcccccccccccccEEEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHcccccccEEccccccccccEEEEEEcHHHHHHHHHHHHHHccccHHHHHccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHccccccccccccEHHHHHHHcccc
Coil and Loop (DISEMBL)
mntgqmfnpgmdaarepasvpdtvlipmrfvwpyggrsvflsgsfnrwsellpmspvegcptvfqiiwsippgyhqykfcvdgewrhdehqpfisseyGIVNTVLlatepnfmhginqgmpsgsnmdvdnEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQgismaplwdfskarfvgvlsASDFILILRELgnhgsnlteeelETHTISAWKEGKAYLNRQIdshgkafprplvyagpndnlKDVARKILhnevatvpiihsssqdgsfpqLLHIASLSGILKCVCRYfrhcssslpilklpicaipvgtwvpkigepnrrplamlrpsASLSAALNLLVQAqvssipivddndslldiYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSDI
Flexible Loop (DISEMBL)
mntgqmfnpgmdaarepasvpDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERIseadlqvsrHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSsipivddndsLLDIYCRSDITALAKDKAYAHInlsemtihqvtivssdi
Low Complexity Region (SEG)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPsaslsaalnllvqaqvsSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSDI
Disordered region (IsUnstruct)
*********************DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI*******************LV*****************DLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIV****
Disordered Region (DISOPRED)
*************************IPMRFVWPYGGRSVFLSGSFNRWSELLPMSP*EGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVS***
Disordered Region (DISEMBL)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSDI
Disordered Region (DISPRO)
*******************VPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF***********************************AERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.974	0.870	0.671	1e-170
P80385	330	5'-AMP-activated protein	yes	no	0.521	0.687	0.334	2e-28
P58108	330	5'-AMP-activated protein	yes	no	0.517	0.681	0.337	2e-28
Q09138	330	5'-AMP-activated protein	yes	no	0.517	0.681	0.337	2e-28
P54619	331	5'-AMP-activated protein	yes	no	0.517	0.679	0.337	2e-28
O54950	330	5'-AMP-activated protein	yes	no	0.512	0.675	0.338	4e-28
Q5R4S0	524	5'-AMP-activated protein	no	no	0.519	0.431	0.296	3e-26
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.519	0.397	0.296	3e-26
Q91WG5	566	5'-AMP-activated protein	no	no	0.519	0.399	0.296	3e-26
Q9UGI9	489	5'-AMP-activated protein	no	no	0.526	0.468	0.315	6e-25

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  599 bits (1544), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/429 (67%), Positives = 341/429 (79%), Gaps = 5/429 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   +D++R  ++    +L P RFVWPYGGR VFLSGSF RW+E +PMSP+EGCPTVFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I ++ PGYHQYKF VDGEWRHDEHQPF+S   G+VNT+ +        G +      SN
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFITGPDMVPAGFSPETLGRSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVD + F R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+AL
Sbjct: 121 MDVD-DVFLRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIAL 175

Query: 186 DIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE 245
           D++LPVKQAFHILYEQGI +APLWDF K +FVGVL   DFILILRELG HGSNLTEEELE
Sbjct: 176 DVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELE 235

Query: 246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
           THTI+AWKEGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP+I+SS 
Sbjct: 236 THTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSL 295

Query: 306 QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA 365
           QDGS+PQLLH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE + +PLA
Sbjct: 296 QDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLA 355

Query: 366 MLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI 425
            LRP ASL +AL LLVQA+VSSIP+VDDNDSL+DIY RSDITALAKDKAYA I+L +MT+
Sbjct: 356 TLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTV 415

Query: 426 HQVTIVSSD 434
           HQ   +  D
Sbjct: 416 HQALQLGQD 424

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 134/263 (50%), Gaps = 36/263 (13%)

Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 223
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 224 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
           DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136

Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
           L D    ++ N++  +P+I   S +      L+I +   ILK               LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177

Query: 343 PICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL 398
            I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237

Query: 399 DIYCRSDITALAKDKAYAHINLS 421
           DIY + D+  LA +K Y ++++S
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS 260

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 36/261 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 345 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 400
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 401 YCRSDITALAKDKAYAHINLS 421
           Y + D+  LA +K Y ++++S
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS 261

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 36/261 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 345 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 400
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 401 YCRSDITALAKDKAYAHINLS 421
           Y + D+  LA +K Y ++++S
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS 261

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 36/261 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 345 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 400
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 401 YCRSDITALAKDKAYAHINLS 421
           Y + D+  LA +K Y ++++S
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS 261

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 134/263 (50%), Gaps = 40/263 (15%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 31  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 90

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 91  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 138

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 139 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 179

Query: 345 CAIPVGTWVPK------IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL 398
              P   ++ K      IG      +AM+R +  +  AL + VQ +VS++P+VD+   ++
Sbjct: 180 TEFPKPEFMSKSLQELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237

Query: 399 DIYCRSDITALAKDKAYAHINLS 421
           DIY + D+  LA +K Y ++++S
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS 260

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 34/260 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 279 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLL 326

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 341
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 327 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 377

Query: 342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 401
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 378 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 428

Query: 402 CRSDITALAKDKAYAHINLS 421
            + D+  LA +K Y +++++
Sbjct: 429 SKFDVINLAAEKTYNNLDIT 448

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 34/260 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 324 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLF 371

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 341
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 372 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 422

Query: 342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 401
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 423 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 473

Query: 402 CRSDITALAKDKAYAHINLS 421
            + D+  LA +K Y +++++
Sbjct: 474 SKFDVINLAAEKTYNNLDIT 493

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 135/260 (51%), Gaps = 34/260 (13%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 321 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLF 368

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 341
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 369 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 419

Query: 342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 401
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 420 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 470

Query: 402 CRSDITALAKDKAYAHINLS 421
            + D+  LA +K Y +++++
Sbjct: 471 SKFDVINLAAEKTYNNLDIT 490

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score =  115 bits (289), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 28/257 (10%)

Query: 166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
           F+  HT Y+ +  S K+V  D  L +K+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 187 FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query: 226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
           IL+L     + S L +  E+E H I  W+E   YL        +   +PLV   PND+L 
Sbjct: 247 ILVLHRY--YRSPLVQIYEIEQHKIETWRE--IYL--------QGCFKPLVSISPNDSLF 294

Query: 285 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 344
           +    ++ N +  +P++   S +     +LHI +   +LK     F H   SL    LP 
Sbjct: 295 EAVYTLIKNRIHRLPVLDPVSGN-----VLHILTHKRLLK-----FLHIFGSL----LPR 340

Query: 345 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS 404
            +    T +  +G    R LA++  +A +  AL++ V  +VS++P+V++   ++ +Y R 
Sbjct: 341 PSFLYRT-IQDLGIGTFRDLAVVLETAPILTALDIFVDRRVSALPVVNECGQVVGLYSRF 399

Query: 405 DITALAKDKAYAHINLS 421
           D+  LA  + Y H+++S
Sbjct: 400 DVIHLAAQQTYNHLDMS 416

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
356529781	492	PREDICTED: sucrose nonfermenting 4-like	0.986	0.871	0.774	0.0
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.986	0.873	0.766	0.0
449450664	491	PREDICTED: sucrose nonfermenting 4-like	0.986	0.873	0.769	0.0
255551699	485	AMP-activated protein kinase, gamma regu	0.977	0.876	0.741	0.0
225432326	491	PREDICTED: sucrose nonfermenting 4-like	0.986	0.873	0.774	0.0
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.977	0.870	0.732	0.0
224123196	464	predicted protein [Populus trichocarpa]	0.926	0.868	0.756	0.0
356563906	482	PREDICTED: sucrose nonfermenting 4-like	0.958	0.865	0.725	1e-180
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.963	0.869	0.725	1e-180
356519984	480	PREDICTED: sucrose nonfermenting 4-like	0.956	0.866	0.727	1e-178

>gi|356529781|ref|XP_003533466.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/430 (77%), Positives = 382/430 (88%), Gaps = 1/430 (0%)

Query: 6   MFNPGMDAAREPAS-VPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVF 64
           MF   MD+AR+ A  V  TVLIPMRFVWPYGGRSVFLSGSF RW ELLPMSPVEGCPTVF
Sbjct: 1   MFGQSMDSARDAAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVF 60

Query: 65  QIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGS 124
           Q+I+++PPGYHQYKF VDGEWRHDEHQP++  EYGIVNTVLLAT+PN+M  +   + SG+
Sbjct: 61  QVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVLPPDVASGN 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           +MDVDN+AF+R+ +++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVA
Sbjct: 121 SMDVDNDAFRRMARLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 180

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LD+DLPVKQAFHIL+EQG+ MAPLWDF K +FVGVLSASDFILILRELGNHGSNLTEEEL
Sbjct: 181 LDVDLPVKQAFHILHEQGVFMAPLWDFCKGQFVGVLSASDFILILRELGNHGSNLTEEEL 240

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWKEGK+YLNRQ + HG AF R  ++AGP DNLKD+A KIL  EV+TVPIIHSS
Sbjct: 241 ETHTISAWKEGKSYLNRQNNGHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVPIIHSS 300

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
           S+D SFPQLLH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE NRRPL
Sbjct: 301 SEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRRPL 360

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           AMLRP+ASL++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AY HINL EMT
Sbjct: 361 AMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMT 420

Query: 425 IHQVTIVSSD 434
           +HQ   +  D
Sbjct: 421 VHQALQLGQD 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/429 (76%), Positives = 379/429 (88%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   MD+AR    V  TVLIPMRFVWPYGGRSVFLSGSF RW ELLPMSPVEGCPTVFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I+++PPGYHQYKF VDGEWRHDEHQP++  +YGIVNTV LAT+PN++  +   + SG++
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLATDPNYIPVLPPDVASGNS 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVDN+AF+R+V+++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVAL
Sbjct: 121 MDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVAL 180

Query: 186 DIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE 245
           D+DLPVKQAFHIL+EQGI MAPLWDF K +FVGVLSA DFILILRELGNHGSNLTEEELE
Sbjct: 181 DVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 240

Query: 246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
           THTISAWKEGK+YLNRQ + HG  F R  ++AGP DNLKD+A KIL  EV+TVPIIHSSS
Sbjct: 241 THTISAWKEGKSYLNRQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSS 300

Query: 306 QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA 365
           +D SFPQLLH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE NR+PLA
Sbjct: 301 EDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQPLA 360

Query: 366 MLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI 425
           MLRP+ASL++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AYAHINL EMT+
Sbjct: 361 MLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINLDEMTV 420

Query: 426 HQVTIVSSD 434
           HQ   +  D
Sbjct: 421 HQALQLGQD 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450664|ref|XP_004143082.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus] gi|449523153|ref|XP_004168589.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/430 (76%), Positives = 369/430 (85%), Gaps = 1/430 (0%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF   MD  R+ A    T+LIPMRFVWPYGGRSVFLSGSF RWSEL+PM+P+EGCPTVFQ
Sbjct: 1   MFASSMDTVRDTARTAGTLLIPMRFVWPYGGRSVFLSGSFTRWSELVPMTPMEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
            I+S+ PGYHQYKF VDGEWRHDE Q  +S EYG+VNTVLLATEP++   + N  M  GS
Sbjct: 61  AIYSLTPGYHQYKFFVDGEWRHDEQQTCVSGEYGVVNTVLLATEPSYAAPLANPEMTPGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           +MDVDNEAF+RLV+I+DG L+EA   ISEADLQ SRHR+S FLSTHT YELLPESGKVVA
Sbjct: 121 SMDVDNEAFRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVVA 180

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LDIDLPVKQAFHIL+EQGI  APLWDFSK +FVGVLSASDFILIL+ELG  GSNLTEEEL
Sbjct: 181 LDIDLPVKQAFHILHEQGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEEL 240

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWKEGKAYLN ++D  G+   R  ++A P DNLKDVA KIL N+VATVPIIHSS
Sbjct: 241 ETHTISAWKEGKAYLNGRVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSS 300

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
           ++DGSFPQLLH+ASLSGILKC+CRYFRHCSS LP+L+LPI AIPVGTWVPKIGE N RPL
Sbjct: 301 AEDGSFPQLLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNGRPL 360

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           AMLRPSASLS+ALNLL+QAQVSSIPIVDDNDSLLD+YCRSDITALAKD+AY HINL EMT
Sbjct: 361 AMLRPSASLSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMT 420

Query: 425 IHQVTIVSSD 434
           IHQ   +  D
Sbjct: 421 IHQALQLGQD 430

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551699|ref|XP_002516895.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223543983|gb|EEF45509.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/430 (74%), Positives = 370/430 (86%), Gaps = 5/430 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF  GMD  RE   V    ++ MRFVWP+GGRSVFLSGSF+RW+ L+PMSP+EGCPTVFQ
Sbjct: 1   MFAQGMDCGRESGGVTAGTVL-MRFVWPHGGRSVFLSGSFDRWTRLVPMSPMEGCPTVFQ 59

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
            I SI PGYHQYKF VDGEWRHDE QP  +SEYG+VNT+L   E N+   I   MP G  
Sbjct: 60  AICSITPGYHQYKFLVDGEWRHDERQPCSTSEYGVVNTILFTGETNYSPAIGHEMPLG-- 117

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           M++DNE F+R+V +SDG++++   RISEADLQVSRHR+SVFLST TAYELLP+SGKVVAL
Sbjct: 118 MELDNETFRRVVHVSDGTVSDVVPRISEADLQVSRHRISVFLSTQTAYELLPKSGKVVAL 177

Query: 186 DIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGN--HGSNLTEEE 243
           D+DLPVKQAFHIL+EQGI MAPLWDFSK++F+G+LSA DFILILRELGN  HGSNLTEEE
Sbjct: 178 DVDLPVKQAFHILHEQGIPMAPLWDFSKSQFIGMLSALDFILILRELGNGNHGSNLTEEE 237

Query: 244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 303
           L+THTISAWKEGKAYLNRQID HG+A  R L++AGP DNLKDVA +IL NEVAT+PIIHS
Sbjct: 238 LDTHTISAWKEGKAYLNRQIDGHGRALSRRLIHAGPYDNLKDVALRILQNEVATIPIIHS 297

Query: 304 SSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRP 363
           SS+DGSFPQLL++ASLS ILKC+CRYFRHCS +LPIL+LPICAIPVGTWVP+IGE NRRP
Sbjct: 298 SSEDGSFPQLLYLASLSEILKCICRYFRHCSGTLPILQLPICAIPVGTWVPRIGESNRRP 357

Query: 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEM 423
           L MLRP+ASLS+ALNLL+ AQVSSIPIVD+ND+LLDIYCRSDITALAKD+ Y HIN++EM
Sbjct: 358 LEMLRPNASLSSALNLLIHAQVSSIPIVDNNDALLDIYCRSDITALAKDRVYTHININEM 417

Query: 424 TIHQVTIVSS 433
           TIHQ+ +  S
Sbjct: 418 TIHQIKVGDS 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432326|ref|XP_002274373.1| PREDICTED: sucrose nonfermenting 4-like protein [Vitis vinifera] gi|297736884|emb|CBI26085.3| unnamed protein product [Vitis vinifera]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/430 (77%), Positives = 372/430 (86%), Gaps = 1/430 (0%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           M +PGMD+ARE   V  TVLIPM FVW YGGRSV+LSGSF  W+ L  MSPVEGCPTVFQ
Sbjct: 1   MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGS 124
           +I S+ PGYHQYKF VDGEWRHDE+QPFIS  YGIVNTVLLA E +++   I+  +PS +
Sbjct: 61  VICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLARESDYIPPTISPAVPSLT 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMDVDNEAFQ+LV+ISDGS  EA  RI E DL+VSRHRVS+FLSTHT YELLPESGKV+ 
Sbjct: 121 NMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVIT 180

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LD+DLPVKQAFHILYEQGIS+APLWD+ K RFVGVLSA DFILILRELGNHGSNLTEEEL
Sbjct: 181 LDVDLPVKQAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEEL 240

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWKEGK YLNRQID +G+AF R L++AGP DNLKDVA KIL NEVATVPIIHSS
Sbjct: 241 ETHTISAWKEGKGYLNRQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVPIIHSS 300

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
           S+DGSFPQLLH+ASLSGILKC+CRYFRH S+SLP+L+LPI AIPVGTWV +IGE N+RPL
Sbjct: 301 SEDGSFPQLLHLASLSGILKCICRYFRHSSNSLPVLQLPIFAIPVGTWVSEIGEANQRPL 360

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           A L PSASLS+AL+LLVQAQVSSIPIVDDNDSLLDIY RSDITALAK++ YAHINL +MT
Sbjct: 361 AKLHPSASLSSALSLLVQAQVSSIPIVDDNDSLLDIYSRSDITALAKNRVYAHINLDDMT 420

Query: 425 IHQVTIVSSD 434
           IHQ   +  D
Sbjct: 421 IHQALQLGQD 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/430 (73%), Positives = 359/430 (83%), Gaps = 5/430 (1%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF  G ++  E +++P TVLIP RFVWPYGGR V LSGSF RWSE +PMSP+EGCPTVFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
           +IWS+ PGYHQYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GS
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMD+DN+ F R    S G+L E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+A
Sbjct: 121 NMDLDNDPFPRG---SSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIA 177

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LD++LPVKQAFH LYEQGI +APLWDF K +FVGVLSA DFILILRELGNHGSNLTEEEL
Sbjct: 178 LDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 237

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWKEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVPIIHS+
Sbjct: 238 ETHTISAWKEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSA 296

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
           SQDGSFPQLLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE N +P 
Sbjct: 297 SQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPF 356

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           AMLRP+ASL AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+L  M+
Sbjct: 357 AMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMS 416

Query: 425 IHQVTIVSSD 434
           IHQ   +  D
Sbjct: 417 IHQALQLGQD 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123196|ref|XP_002330362.1| predicted protein [Populus trichocarpa] gi|222871566|gb|EEF08697.1| predicted protein [Populus trichocarpa]

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/407 (75%), Positives = 350/407 (85%), Gaps = 4/407 (0%)

Query: 28  MRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH 87
           MRFVW +GGR+VFLSGSFNRW EL+PMSPVEGCP VFQ I+ I PG HQYKFCVDGEWRH
Sbjct: 1   MRFVWTHGGRNVFLSGSFNRWGELIPMSPVEGCPNVFQAIYDITPGNHQYKFCVDGEWRH 60

Query: 88  DEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEA 147
           DE QP  ++EYGIVN V    E N+    N  M  GS+M++DNEAF RLV +SDG+LT  
Sbjct: 61  DELQPHSTTEYGIVNIVQFNMEANY----NPEMIPGSSMELDNEAFTRLVSVSDGTLTGG 116

Query: 148 AERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAP 207
              ISEADLQVSRHR+SVFL+THTAYELLP+SGKVVALD+DLPVKQAFHIL+EQGISMAP
Sbjct: 117 VPSISEADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAFHILFEQGISMAP 176

Query: 208 LWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHG 267
           LWDFS+ +FVGVLSA DFILILRELGN+GSNLTEEEL+TH+ISAWKEGKAYL RQID H 
Sbjct: 177 LWDFSRGQFVGVLSALDFILILRELGNNGSNLTEEELDTHSISAWKEGKAYLERQIDGHV 236

Query: 268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 327
              PR L++AGP DNLK+VA +IL  +VATVP+IHSSS+D SFPQLLH+ASLSGILKC+C
Sbjct: 237 WPLPRHLIHAGPYDNLKEVALRILQYKVATVPVIHSSSEDSSFPQLLHLASLSGILKCIC 296

Query: 328 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSS 387
           RYFRHCSS+LPIL+LPI AIPVG+WVP IGEP+  PL MLRPSASLS+ALNLL+QAQVSS
Sbjct: 297 RYFRHCSSTLPILQLPIGAIPVGSWVPSIGEPSGCPLVMLRPSASLSSALNLLIQAQVSS 356

Query: 388 IPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSD 434
           IPIVD+NDSL+DIYCRSDITALAKDK Y HINL+EMTI+Q   +  D
Sbjct: 357 IPIVDENDSLVDIYCRSDITALAKDKIYTHINLNEMTINQALQLGQD 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563906|ref|XP_003550198.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/430 (72%), Positives = 358/430 (83%), Gaps = 13/430 (3%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF+P MD+AR+ + V  TVLIPMRFVWPYGGRSV+LSGSF RWSELL MSPVEGCPTVFQ
Sbjct: 1   MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I S+ PG+HQYKF VDGEWRHD+ QP  S EYGIVNTV LAT+PN +  +   + SGSN
Sbjct: 61  VIHSLVPGHHQYKFFVDGEWRHDDLQPCESGEYGIVNTVSLATDPNILPVLTPDIVSGSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAA-ERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           MDVDNEAF+R+V+++DG+L+     RIS+ D+Q SR R+S FLS  TAYELLPESGKVV 
Sbjct: 121 MDVDNEAFRRMVRLTDGTLSNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVT 180

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LD+DLPVKQAFHIL+EQGI +APLWD  K +FVGVLSA DFILILRELGNHGSNLTEEEL
Sbjct: 181 LDVDLPVKQAFHILHEQGIPIAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEEEL 240

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWK GK             F +  + AGP DNLK++A KIL + ++TVPIIHS 
Sbjct: 241 ETHTISAWKGGKW----------TGFTQCFIRAGPYDNLKEIAVKILQHGISTVPIIHS- 289

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
            +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE NRRPL
Sbjct: 290 -EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPL 348

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           AMLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HINL EMT
Sbjct: 349 AMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMT 408

Query: 425 IHQVTIVSSD 434
           +HQ   +  D
Sbjct: 409 VHQALQLGQD 418

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/430 (72%), Positives = 355/430 (82%), Gaps = 11/430 (2%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF  G ++  E +++P TVLIP RFVWPYGGR V LSGSF RWSE +PMSP+EGCPTVFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGS 124
           +IWS+ PGYHQYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GS
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGS 120

Query: 125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
           NMD+DN+ F R          E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+A
Sbjct: 121 NMDLDNDPFPR---------GEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIA 171

Query: 185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
           LD++LPVKQAFH LYEQGI +APLWDF K +FVGVLSA DFILILRELGNHGSNLTEEEL
Sbjct: 172 LDVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 231

Query: 245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
           ETHTISAWKEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVPIIHS+
Sbjct: 232 ETHTISAWKEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSA 290

Query: 305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
           SQDGSFPQLLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE N +P 
Sbjct: 291 SQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPF 350

Query: 365 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
           AMLRP+ASL AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+L  M+
Sbjct: 351 AMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMS 410

Query: 425 IHQVTIVSSD 434
           IHQ   +  D
Sbjct: 411 IHQALQLGQD 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519984|ref|XP_003528648.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 312/429 (72%), Positives = 354/429 (82%), Gaps = 13/429 (3%)

Query: 6   MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
           MF+P MD+AR+ + V  TVLIPMRFVWPYGGRSV+LSGSF RWSELL MSPVEGCPTVFQ
Sbjct: 1   MFSPSMDSARDASGVAGTVLIPMRFVWPYGGRSVYLSGSFTRWSELLQMSPVEGCPTVFQ 60

Query: 66  IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSN 125
           +I S+ PG+HQYKF VDGEWRHD+HQP +S EYGIVNTVLLAT+PN +  +   + SGSN
Sbjct: 61  VIHSLIPGHHQYKFFVDGEWRHDDHQPCVSGEYGIVNTVLLATDPNIVPVLTPEIVSGSN 120

Query: 126 MDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVAL 185
           MDVDNEAF R   +++  L     RIS+ D+Q SR R+S FLS  TAYELLPESGKVV L
Sbjct: 121 MDVDNEAF-RYSTLNNVLL----PRISDVDIQTSRQRISAFLSMSTAYELLPESGKVVTL 175

Query: 186 DIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE 245
           D+DLPVKQAFHIL+EQGI +APLWD  K +FVGVLSA DFILI+RELGNHGSNLTEEELE
Sbjct: 176 DVDLPVKQAFHILHEQGIPVAPLWDICKGQFVGVLSALDFILIIRELGNHGSNLTEEELE 235

Query: 246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
           THTISAWK GK           + F R  V  GP DNLK++A KIL N ++TVPIIHS  
Sbjct: 236 THTISAWKGGKW------TGFTQCFIRVSVLCGPYDNLKEIAVKILQNGISTVPIIHS-- 287

Query: 306 QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA 365
           +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE NRRPLA
Sbjct: 288 EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLA 347

Query: 366 MLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI 425
           MLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HINL EMT+
Sbjct: 348 MLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEMTV 407

Query: 426 HQVTIVSSD 434
           HQ   +  D
Sbjct: 408 HQALQLGQD 416

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.972	0.868	0.646	8.8e-150
UNIPROTKB|B4DDT7	299	PRKAG1 "cDNA FLJ58311, highly	0.291	0.424	0.385	1e-19
UNIPROTKB|Q09138	330	PRKAG1 "5'-AMP-activated prote	0.356	0.469	0.374	3.6e-19
UNIPROTKB|F1PBG0	328	PRKAG1 "Uncharacterized protei	0.358	0.475	0.352	3.8e-19
UNIPROTKB|P54619	331	PRKAG1 "5'-AMP-activated prote	0.349	0.459	0.369	5.7e-18
UNIPROTKB|F1MH48	330	PRKAG1 "5'-AMP-activated prote	0.294	0.387	0.390	7.3e-18
UNIPROTKB|P58108	330	PRKAG1 "5'-AMP-activated prote	0.294	0.387	0.390	7.3e-18
RGD|3388	330	Prkag1 "protein kinase, AMP-ac	0.298	0.393	0.384	2.4e-17
MGI|MGI:108411	330	Prkag1 "protein kinase, AMP-ac	0.294	0.387	0.390	3.3e-17
FB|FBgn0264357	1400	SNF4Agamma "SNF4/AMP-activated	0.324	0.100	0.344	2.3e-16

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1462 (519.7 bits), Expect = 8.8e-150, P = 8.8e-150
 Identities = 278/430 (64%), Positives = 331/430 (76%)

Query:     6 MFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQ 65
             MF   +D++R  ++    +L P RFVWPYGGR VFLSGSF RW+E +PMSP+EGCPTVFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    66 IIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGS 124
             +I ++ PGYHQYKF VDGEWRHDEHQPF+S   G+VNT+ + T P+ +  G +      S
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFI-TGPDMVPAGFSPETLGRS 119

Query:   125 NMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVA 184
             NMDVD + F R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+A
Sbjct:   120 NMDVD-DVFLRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIA 174

Query:   185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 244
             LD++LPVKQAFHILYEQGI +APLWDF K +FVGVL   DFILILRELG HGSNLTEEEL
Sbjct:   175 LDVNLPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEEL 234

Query:   245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSS 304
             ETHTI+AWKEGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP+I+SS
Sbjct:   235 ETHTIAAWKEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSS 294

Query:   305 SQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 364
              QDGS+PQLLH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE + +PL
Sbjct:   295 LQDGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPL 354

Query:   365 AMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 424
             A LRP                 SIP+VDDNDSL+DIY RSDITALAKDKAYA I+L +MT
Sbjct:   355 ATLRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMT 414

Query:   425 IHQVTIVSSD 434
             +HQ   +  D
Sbjct:   415 VHQALQLGQD 424

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

UNIPROTKB|B4DDT7 PRKAG1 "cDNA FLJ58311, highly similar to 5'-AMP-activated protein kinase subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 54/140 (38%), Positives = 75/140 (53%)

Query:   167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI 226
             + +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DFI
Sbjct:     1 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 60

Query:   227 LILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKD 285
              IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L D
Sbjct:    61 NILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLFD 108

Query:   286 VARKILHNEVATVPIIHSSS 305
                 ++ N++  +P+I   S
Sbjct:   109 AVSSLIRNKIHRLPVIDPES 128

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|Q09138 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 3.6e-19, Sum P(2) = 3.6e-19
 Identities = 64/171 (37%), Positives = 87/171 (50%)

Query:   137 VQISDGSLTEAAERISEADLQVSRHRV-SVFLSTHTAYELLPESGKVVALDIDLPVKQAF 195
             V  SD S   A E     D   S + V + F+ +H  Y+L+P S K+V  D  L VK+AF
Sbjct:     4 VTSSDSS--SAVENEHPQDTPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAF 61

Query:   196 HILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKE 254
               L   G+  APLWD  K  FVG+L+ +DFI IL     + S L +  ELE H I  W+E
Sbjct:    62 FALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE 119

Query:   255 GKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
                YL    DS      +PLV   PN +L D    ++ N++  +P+I   S
Sbjct:   120 --VYLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 160

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|F1PBG0 PRKAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
 Identities = 60/170 (35%), Positives = 87/170 (51%)

Query:   138 QISDGSLTEAAERISEADLQVSRHRV-SVFLSTHTAYELLPESGKVVALDIDLPVKQAFH 196
             Q++    + A E     +   S + V + F+ +H  Y+L+P S K+V  D  L VK+AF 
Sbjct:     1 QVTSSDSSSALENEHPQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFF 60

Query:   197 ILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEG 255
              L   G+  APLWD  K  FVG+L+ +DFI IL     + S L +  ELE H I  W+E 
Sbjct:    61 ALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE- 117

Query:   256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
               YL    DS      +PLV   PN +L D    ++ N++  +P+I   S
Sbjct:   118 -VYLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 158

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P54619 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
 Identities = 62/168 (36%), Positives = 86/168 (51%)

Query:   140 SDGSLTEAAERISEADLQVSRHRV-SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 198
             SD S   A E     +   S + V + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct:     7 SDSS--PAVENEHPQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 64

Query:   199 YEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKA 257
                G+  APLWD  K  FVG+L+ +DFI IL     + S L +  ELE H I  W+E   
Sbjct:    65 VTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--V 120

Query:   258 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
             YL    DS      +PLV   PN +L D    ++ N++  +P+I   S
Sbjct:   121 YLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 160

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043531 "ADP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0004691 "cAMP-dependent protein kinase activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007283 "spermatogenesis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=TAS

GO:0006110 "regulation of glycolysis" evidence=TAS

GO:0045860 "positive regulation of protein kinase activity" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IDA

UNIPROTKB|F1MH48 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
 Identities = 55/141 (39%), Positives = 76/141 (53%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
             F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct:    32 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query:   226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
             I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct:    92 INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query:   285 DVARKILHNEVATVPIIHSSS 305
             D    ++ N++  +P+I   S
Sbjct:   140 DAVSSLIRNKIHRLPVIDPES 160

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P58108 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 7.3e-18, Sum P(2) = 7.3e-18
 Identities = 55/141 (39%), Positives = 76/141 (53%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
             F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct:    32 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query:   226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
             I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct:    92 INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query:   285 DVARKILHNEVATVPIIHSSS 305
             D    ++ N++  +P+I   S
Sbjct:   140 DAVSSLIRNKIHRLPVIDPES 160

GO:0005634 "nucleus" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

RGD|3388 Prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 229 (85.7 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 55/143 (38%), Positives = 77/143 (53%)

Query:   164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 223
             + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +
Sbjct:    29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query:   224 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
             DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +
Sbjct:    89 DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136

Query:   283 LKDVARKILHNEVATVPIIHSSS 305
             L D    ++ N++  +P+I   S
Sbjct:   137 LFDAVSSLIRNKIHRLPVIDPES 159

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA;TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016208 "AMP binding" evidence=IMP;IDA

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

MGI|MGI:108411 Prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 3.3e-17, P = 3.3e-17
 Identities = 55/141 (39%), Positives = 76/141 (53%)

Query:   166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 225
             F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct:    31 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 90

Query:   226 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 284
             I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct:    91 INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 138

Query:   285 DVARKILHNEVATVPIIHSSS 305
             D    ++ N++  +P+I   S
Sbjct:   139 DAVSSLIRNKIHRLPVIDPES 159

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

FB|FBgn0264357 SNF4Agamma "SNF4/AMP-activated protein kinase gamma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 53/154 (34%), Positives = 88/154 (57%)

Query:   149 ERISEADLQVSRHRVSV-FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAP 207
             E+++ +DL+    ++ V F   H  Y+L+P S K+V  D  L VK+AF+ L   G+  AP
Sbjct:   909 EKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAP 968

Query:   208 LWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHG 267
             LWD  K +FVG+L+ +DFI IL ++     N + E+LE H +  W+   + L+ Q+    
Sbjct:   969 LWDSEKQQFVGMLTITDFIKIL-QMYYKSPNASMEQLEEHKLDTWR---SVLHNQV---- 1020

Query:   268 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 301
                  PLV  GP+ +L D  + ++H+ +  +P+I
Sbjct:  1021 ----MPLVSIGPDASLYDAIKILIHSRIHRLPVI 1050

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS;NAS

GO:0042632 "cholesterol homeostasis" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030730 "sequestering of triglyceride" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0042595 "behavioral response to starvation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.6713	0.9747	0.8706	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019790001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (491 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	435
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-26
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	3e-25
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	2e-19
cd02688	82	cd02688, E_set, Early set domain associated with t	1e-06
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	2e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	5e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-05
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	2e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	5e-05
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	6e-05
pfam00571	57	pfam00571, CBS, CBS domain	7e-05
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	1e-04
pfam00571	57	pfam00571, CBS, CBS domain	2e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-04

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  101 bits (254), Expect = 2e-26
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 27  PMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEW 85
           P+ F WP  GG+ V+++GSF+ W + +P+         F     +PPG ++YKF VDGEW
Sbjct: 1   PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGD--GEFSATVELPPGRYEYKFIVDGEW 58

Query: 86  RHDEHQPFISSEYGIVNTVL 105
            HD   P ++ E+G +N VL
Sbjct: 59  VHDPDLPTVTDEFGNLNNVL 78

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 98.5 bits (246), Expect = 3e-25
 Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 43/141 (30%)

Query: 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 239
            K+V  D  LPVK+AF+ L E GI  APLWD  K +FVG+L+ +DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 240 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 299
                                             LV   P  +L D A  +L N++  +P
Sbjct: 52  ----------------------------------LVSIHPERSLFDAALLLLKNKIHRLP 77

Query: 300 IIHSSSQDGSFPQLLHIASLS 320
           +I  S+  G +          
Sbjct: 78  VIDPSTGTGLYILTSRRILKF 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.0 bits (206), Expect = 2e-19
 Identities = 24/64 (37%), Positives = 42/64 (65%)

Query: 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
           + +A  RP   L   L++LV+ +VS++PIVD+N  ++D+Y R D+  LAK+ AY +++L+
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 422 EMTI 425
               
Sbjct: 61  VGEA 64

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 31 VWPYGGRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHD 88
          ++  G +SV+L GSFN W +   LPM+   G   V+     +P G ++YK+ +DG     
Sbjct: 6  IFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDGGKNVL 63

Query: 89 EH 90
           +
Sbjct: 64 PY 65

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 26  IPMRFVWP--YGGRSVFLSGSFNRWS-ELLPMSPVEGCPTVFQIIWSIPPGY-HQYKFCV 81
             + F  P   G  SV L G FN W  +  PM  ++     F     +P G  +Q+++ +
Sbjct: 1   CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKN--GTFSATLDLPAGREYQFRYLI 58

Query: 82  DGE-WRHDEHQPFI-SSEYGIVNTVL 105
           DGE W +D        + +G  N+V+
Sbjct: 59  DGERWVNDPEADAYAPNGFGEENSVV 84

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
            +  + P  +L  AL LL +  +  +P+VD+   L+ I  R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 25/135 (18%)

Query: 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
           R +V   P+D + +  R +L + ++ +P++     DG   +L+ I +   +L+       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLR------- 47

Query: 332 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 391
                         A      +  +G+   R +  + P  SL  A  L+++  +  +P+V
Sbjct: 48  ------------ALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 392 DDNDSLLDIYCRSDI 406
           DD   L+ I  RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 27/121 (22%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
            VV +  D  V +A  ++ E GIS  P+ D    R VG+++  D   +LR L   G +  
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERD---LLRALAEGGLDPL 57

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
               +  T                       R +V   P+ +L++ A  +L + +  +P+
Sbjct: 58  VTVGDVMT-----------------------RDVVTVSPDTSLEEAAELMLEHGIRRLPV 94

Query: 301 I 301
           +
Sbjct: 95  V 95

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
            VV +    P+ +A  I+   G    P+ D    + VG+++A+D   IL+ LG       
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATD---ILKYLGGGEKFNK 58

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
            +            G   +N  + S      R ++   P+D++KD A  +L   V  +P+
Sbjct: 59  IKT---------GNGLEAINEPVRSIMT---RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 301 I 301
           +
Sbjct: 107 V 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 420
           R +  + P  +++ AL L+++  +S +P+VDD+  L+ I    D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 421 SEMTIHQVTIVSSD 434
            ++    V  VS D
Sbjct: 61  GDVMTRDVVTVSPD 74

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 20/146 (13%)

Query: 180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 239
            KVV++D D  V  AF ++ +  IS  P+ D  K + +G +SASD   +L    +     
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVD-EKGKLIGNISASDLKGLLLSPDDLLLYR 59

Query: 240 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 299
           T    E        +G                RPL+   P+  LK+V  K++ N+V  V 
Sbjct: 60  TITFKELSEKFTDSDGVK-------------SRPLITCTPSSTLKEVITKLVANKVHRVW 106

Query: 300 IIHSSSQDGSFPQLLHIASLSGILKC 325
           ++    ++G     + + +L+ I+  
Sbjct: 107 VV---DEEGK---PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
              +  + P  SL  AL L+ +  +S +P+VD++  L+ I    D+
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 272 RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330
            P+V    +D+L D A +++  + +  +P++   ++DG   +L+ + +   +L+      
Sbjct: 1   SPVVTLSEDDSLAD-AEELMREHRIRHLPVV---NEDG---KLVGLLTQRDLLRAALSSL 53

Query: 331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 390
                     +  +   PV   +       +  +  + P   L  A  ++V+ ++  +P+
Sbjct: 54  SDNGEESLTKERDV---PVAEVM-------KTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 391 VDDNDSLLDIYCRSDI 406
           VDD  +L+ I  RSD 
Sbjct: 104 VDDKGTLVGIITRSDF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRE 231
            VV +  D  +++A  ++ E GIS  P+ D    + VG+++  D +  L E
Sbjct: 8   DVVTVPPDTSLEEALELMRENGISRLPVVD-EDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL 229
           VV +  D  +++A  +L E GI   P+ D  + R VG+++  D I  L
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
            R      P  +L  AL  + +  +  +P+VDD+  L+ I  RSD+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.95
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.92
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.77
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.68
COG2524	294	Predicted transcriptional regulator, contains C-te	99.68
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.66
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.65
COG2524	294	Predicted transcriptional regulator, contains C-te	99.62
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.59
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.56
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.55
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.55
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.5
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.5
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.49
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.48
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.46
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.46
COG3620	187	Predicted transcriptional regulator with C-termina	99.44
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.43
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.42
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.41
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.4
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.4
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.4
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.4
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.39
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.39
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.39
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.38
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.38
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.37
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.37
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.37
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.37
COG2905	610	Predicted signal-transduction protein containing c	99.36
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.35
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.35
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.35
COG0517	117	FOG: CBS domain [General function prediction only]	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.34
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.34
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.34
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.34
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.34
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.33
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.33
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.33
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.33
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.33
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.33
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.32
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.32
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.31
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.31
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.31
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.3
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.3
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.3
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.3
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.3
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.29
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.29
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.29
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.29
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.29
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.29
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.28
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.28
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.28
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.27
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.27
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.27
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.26
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.26
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.26
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.26
COG3620	187	Predicted transcriptional regulator with C-termina	99.25
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.25
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.25
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.25
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.24
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.23
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.23
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.22
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.21
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.21
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.21
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.21
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.21
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.2
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.2
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.2
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.19
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.19
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.19
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.18
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.18
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.17
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.17
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.17
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.17
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.17
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.17
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.17
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.16
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.16
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.16
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.16
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.16
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.16
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.15
COG2905	610	Predicted signal-transduction protein containing c	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.15
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.15
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.15
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.15
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.14
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.13
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.13
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.13
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.12
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.12
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.12
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.12
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.11
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.11
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.11
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.11
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.11
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.11
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.11
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.11
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.11
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.1
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.09
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.09
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.08
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.08
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.08
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.08
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.07
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.07
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.07
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.07
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.06
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.06
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.05
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.05
PRK11573	413	hypothetical protein; Provisional	99.03
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.03
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.02
COG0517	117	FOG: CBS domain [General function prediction only]	99.02
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.02
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.02
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.0
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.0
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.99
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.99
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.98
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.98
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.97
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.97
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.96
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.95
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.95
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.93
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.91
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.9
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.85
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.85
COG4109	432	Predicted transcriptional regulator containing CBS	98.84
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.84
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.82
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.76
COG4109	432	Predicted transcriptional regulator containing CBS	98.71
PRK11573	413	hypothetical protein; Provisional	98.69
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.66
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.54
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.52
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.52
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.51
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.41
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.39
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.36
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.3
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.21
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.2
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.16
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.1
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.04
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.87
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.83
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.78
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.74
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.73
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.71
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.71
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.64
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.64
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.61
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.59
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.55
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.55
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.49
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.43
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.36
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.36
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.36
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.12
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.11
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.02
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.95
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	96.91
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.83
PRK12568	730	glycogen branching enzyme; Provisional	96.83
PRK12313	633	glycogen branching enzyme; Provisional	96.81
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.79
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.68
PRK14705	1224	glycogen branching enzyme; Provisional	96.67
PLN02447	758	1,4-alpha-glucan-branching enzyme	96.66
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.6
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.57
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.46
PRK14706	639	glycogen branching enzyme; Provisional	96.42
PRK05402	726	glycogen branching enzyme; Provisional	96.34
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.98
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	95.7
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	95.67
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	95.57
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.13
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	94.73
PRK05402	726	glycogen branching enzyme; Provisional	94.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.52
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	94.29
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.27
PLN02950	909	4-alpha-glucanotransferase	94.01
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	93.43
PLN02950	909	4-alpha-glucanotransferase	92.64
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	90.92
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	90.7
PLN02316	1036	synthase/transferase	89.96
PLN02960	897	alpha-amylase	88.7
PLN02316	1036	synthase/transferase	88.54
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	87.79
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	87.45
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	84.07
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	83.68
PRK03705	658	glycogen debranching enzyme; Provisional	83.68

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.95  E-value=7.1e-27  Score=235.51  Aligned_cols=250  Identities=30%  Similarity=0.537  Sum_probs=213.8

Q ss_pred             HHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCC
Q 013832          159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN  238 (435)
Q Consensus       159 ~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~  238 (435)
                      ....+..|+..++||+++|.+++++.+|..+++.+||.+|..++++++||||..+.+++|+++..||+.++...+.....
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            45688999999999999999999999999999999999999999999999999889999999999999999888774221


Q ss_pred             C-ChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEee
Q 013832          239 L-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA  317 (435)
Q Consensus       239 l-~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGii  317 (435)
                      . ..+.++...+..+++.....       +....++++.+.|..++.++...+.++++|++||+|  .+.+   .+++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~il  202 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYIL  202 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeeh
Confidence            1 22334444444444431111       111334559999999999999999999999999997  3455   799999


Q ss_pred             eHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q 013832          318 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  397 (435)
Q Consensus       318 T~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~l  397 (435)
                      |++.|++++..+.+..+ ..+++..++.++.+|+|.         ++..+..++++.+|+++|.+++++++||||++|++
T Consensus       203 t~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~  272 (381)
T KOG1764|consen  203 TQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKK  272 (381)
T ss_pred             hHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence            99999999998877665 457889999999999996         79999999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHHHhhcccccCCCCCcc-HHHHHhhhc
Q 013832          398 LDIYCRSDITALAKDKAYAHINLSEMT-IHQVTIVSS  433 (435)
Q Consensus       398 vGiis~~DI~~~~~~~~~~~l~~~~~~-v~~~l~~~~  433 (435)
                      +|+|++.|++.++....|..++   .+ +.+++..|.
T Consensus       273 v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~  306 (381)
T KOG1764|consen  273 VGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP  306 (381)
T ss_pred             ecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc
Confidence            9999999999999999999886   67 999998774

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.92  E-value=1.1e-24  Score=171.93  Aligned_cols=79  Identities=42%  Similarity=0.907  Sum_probs=73.5

Q ss_pred             eeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCeeeE
Q 013832           25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV  104 (435)
Q Consensus        25 ~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nnv  104 (435)
                      ++|++|+|+++|++|+|+|+|++|++.+||.+..  .+ |+++++||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            4799999999999999999999999878999852  34 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 013832          105 LL  106 (435)
Q Consensus       105 l~  106 (435)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.77  E-value=2.3e-18  Score=136.94  Aligned_cols=77  Identities=34%  Similarity=0.726  Sum_probs=69.5

Q ss_pred             eeEEEEecCC-CcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeee-cCCCCC-eeeCCCCCee
Q 013832           26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN  102 (435)
Q Consensus        26 ~~~~f~w~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~-~d~~~~-~~~d~~G~~n  102 (435)
                      ++++|+|..+ +++|+|+|+|++|+. .+|++.  .+|.|+++++|+||.|+|||+|||.|. +||.++ +..|+.|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5899999877 599999999999984 699884  469999999999999999999999998 999998 5888899999


Q ss_pred             eEE
Q 013832          103 TVL  105 (435)
Q Consensus       103 nvl  105 (435)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.68  E-value=7.9e-17  Score=156.75  Aligned_cols=90  Identities=36%  Similarity=0.739  Sum_probs=83.7

Q ss_pred             CCceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCe
Q 013832           22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV  101 (435)
Q Consensus        22 ~~~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~  101 (435)
                      .....|++|+|..+++.|+|+|+|.||+..++|.+..+..|.|.+++.|++|.|+|||+|||+|++|+..|++.|..|+.
T Consensus        76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~  155 (289)
T KOG1616|consen   76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL  155 (289)
T ss_pred             cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence            45579999999999999999999999999999988755556699999999999999999999999999999999999999


Q ss_pred             eeEEEecCCC
Q 013832          102 NTVLLATEPN  111 (435)
Q Consensus       102 nnvl~v~~~~  111 (435)
                      ||++.|.+.+
T Consensus       156 ~N~i~v~~~~  165 (289)
T KOG1616|consen  156 NNILEVQDPD  165 (289)
T ss_pred             ccceEecCcc
Confidence            9999999887

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.68  E-value=2.3e-16  Score=146.16  Aligned_cols=115  Identities=20%  Similarity=0.382  Sum_probs=101.7

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .|+++++++.+++||.+|++++.+++++..||+|+    +   +++|++|.+||.+.++...         +..      
T Consensus       177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g~---------~~~------  234 (294)
T COG2524         177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANGN---------LDA------  234 (294)
T ss_pred             hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcCC---------ccc------
Confidence            58899999999999999999999999999999963    3   6999999999999887531         112      


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                            ++.+.|+++++++..|+.+++|+++|.++++.+|-|+|.+|+.+|+|||+||+..++
T Consensus       235 ------kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         235 ------KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ------cHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                  244556789999999999999999999999999999999999999999999998654

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.66  E-value=9.8e-16  Score=144.36  Aligned_cols=171  Identities=16%  Similarity=0.284  Sum_probs=125.9

Q ss_pred             EEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH----HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHH
Q 013832          216 FVGVLSASDFILILRELGNHGSNLTEEELETHTISA----WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKIL  291 (435)
Q Consensus       216 ~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~----~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~  291 (435)
                      =+| +|.+|+-..|+.+.... +++.++++...-+.    ++.....     .....+|+++++++.+++++.+|.+.|.
T Consensus       200 rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~-----LtcadIMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         200 RVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGE-----LTCADIMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             ccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhcc-----ccHHHhcCccceecCCcCChHHHHHHHH
Confidence            345 78899999998776432 34566666542211    1111111     0113479999999999999999999999


Q ss_pred             hcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCC
Q 013832          292 HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSA  371 (435)
Q Consensus       292 ~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~  371 (435)
                      +++++.+||+|+   ..   +++||+|++|+++.....    +      -+.++.+    ..+.+...|+.++.|+.+|+
T Consensus       273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~~----p------~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARPS----P------FQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCccccccccc---cc---ceeeeeeHHHHhhccCcc----h------HHHhhcc----CCCcccccccCcceeecCCC
Confidence            999999999973   33   799999999998632211    0      0111111    11235667788999999999


Q ss_pred             CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          372 SLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       372 ~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      +..+++-++.+.+.+++||+|+.|+++||||.+|++..+...
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence            999999999999999999999999999999999999865443

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.65  E-value=1e-15  Score=144.27  Aligned_cols=144  Identities=19%  Similarity=0.353  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC
Q 013832          157 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG  236 (435)
Q Consensus       157 e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~  236 (435)
                      |..++++++-+.+.+|.|+|  |..|+++..++++.+|.++|.+|+++.+||.|+. .+++|++|++||.+....     
T Consensus       232 ~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-~rl~GiVt~~dl~~~a~~-----  303 (382)
T COG3448         232 ETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-RRLVGIVTQRDLLKHARP-----  303 (382)
T ss_pred             HHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc-cceeeeeeHHHHhhccCc-----
Confidence            56778889999999999999  6689999999999999999999999999999975 699999999999752211     


Q ss_pred             CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEe
Q 013832          237 SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI  316 (435)
Q Consensus       237 ~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGi  316 (435)
                      +++          +.+|-    .  ..+..-.+|+.++.++.|+++..+++-++.+.+.|.+||+|   ..|   +++||
T Consensus       304 ~p~----------qrlr~----~--~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld---~~g---~lvGI  361 (382)
T COG3448         304 SPF----------QRLRF----L--RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD---AAG---KLVGI  361 (382)
T ss_pred             chH----------HHhhc----c--CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc---CCC---cEEEE
Confidence            111          11110    0  01111125888999999999999999999999999999997   356   89999


Q ss_pred             eeHHhHHHHHHhhh
Q 013832          317 ASLSGILKCVCRYF  330 (435)
Q Consensus       317 iT~~dIl~~l~~~~  330 (435)
                      +||.|++..+.++.
T Consensus       362 vsQtDliaal~r~~  375 (382)
T COG3448         362 VSQTDLIAALYRNW  375 (382)
T ss_pred             eeHHHHHHHHHHHH
Confidence            99999999988764

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.62  E-value=3.8e-15  Score=138.15  Aligned_cols=114  Identities=21%  Similarity=0.353  Sum_probs=98.5

Q ss_pred             CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       179 s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      +.++++++++.||++|.+.|++++++.+||+|.  ++++|++|.+|+...+......   .           .+++    
T Consensus       179 s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~---~-----------kV~~----  238 (294)
T COG2524         179 SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD---A-----------KVSD----  238 (294)
T ss_pred             cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc---c-----------cHHH----
Confidence            779999999999999999999999999999995  4899999999999988754211   0           1122    


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                                .|++.++++..++.++||+++|..+++.|+.|+|+   .|   +.+||||..|||+.++.
T Consensus       239 ----------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~ia~  292 (294)
T COG2524         239 ----------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRIAG  292 (294)
T ss_pred             ----------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHhhc
Confidence                      27899999999999999999999999999999974   34   79999999999988763

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.59  E-value=4.6e-14  Score=142.77  Aligned_cols=198  Identities=15%  Similarity=0.187  Sum_probs=150.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ..+.+.+..++.+|...+.+++++++||.|.+.+.++.++|+.-++..+.......   ....+...++..+        
T Consensus       163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl--------  231 (381)
T KOG1764|consen  163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL--------  231 (381)
T ss_pred             CceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh--------
Confidence            33899999999999999999999999999977889999999999988887665432   1223333333221        


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccc
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL  340 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~  340 (435)
                          +.|  ....+..+..++++.+|+++|.+.+++.+||++.   .|   +.+|+++..|+........-      ..+
T Consensus       232 ----~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~~  293 (381)
T KOG1764|consen  232 ----GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NNL  293 (381)
T ss_pred             ----Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Ccc
Confidence                112  3357889999999999999999999999999963   34   57999999999766554311      111


Q ss_pred             ccc-cccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          341 KLP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       341 ~~~-v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ..+ +.+     +.. .......++++|+++.+|.++++.|..+++++++|||++|.++|+||.+|++..+...
T Consensus       294 ~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  294 DLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             chhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            122 211     110 0011223699999999999999999999999999999999999999999999987654

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.8e-14  Score=116.28  Aligned_cols=95  Identities=20%  Similarity=0.332  Sum_probs=83.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      .++++.+++++.+|++.|.+++++.+||+++  +++   +++|++|..|+++.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence            4688999999999999999999999999963  235   7999999999965211                         


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~-g~lvGiis~~DI~~  408 (435)
                                 +.++.+++++.+|+++|.+++++++||+|++ |+++|++|++||+.
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                       3579999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=9.8e-14  Score=117.31  Aligned_cols=118  Identities=21%  Similarity=0.321  Sum_probs=92.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++++++||+++   .|   +++|+++.+|+++++..+....      ...++.+...   
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~~---   66 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYNN------LDLTVGEALE---   66 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCcccc------ccCCHHHHHh---
Confidence            5789999999999999999999999999963   45   7999999999997654321110      0111221100   


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                         ....+.+++.++.+++++.+|+++|.+++++.+||||++|+++|+||++|++.
T Consensus        67 ---~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          67 ---RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             ---hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence               11223357889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=4.7e-14  Score=115.70  Aligned_cols=97  Identities=46%  Similarity=0.726  Sum_probs=84.9

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      +++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|++..+                              
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------   50 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------   50 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence            36889999999999999999999999999997557999999999985311                              


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                 .  ++++.|++++.+|+++|.+++++++||+++  ++|   +++|++|.+||++
T Consensus        51 -----------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~   97 (98)
T cd04618          51 -----------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK   97 (98)
T ss_pred             -----------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence                       1  568999999999999999999999999974  235   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.50  E-value=6.4e-13  Score=141.66  Aligned_cols=209  Identities=14%  Similarity=0.216  Sum_probs=139.8

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.|+|.  .+++++++++++.+|+++|.+++++.+||+|++ ++++|++|..|+...+...... .     .+.....
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~-~-----~~~~~~~  138 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP-E-----ILSKSPT  138 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch-h-----hhhhcCC
Confidence            57888874  478899999999999999999999999999964 8999999999999866543210 0     0000000


Q ss_pred             HHHHHHHHhhccc--------c--cC------------CCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCC
Q 013832          250 SAWKEGKAYLNRQ--------I--DS------------HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQD  307 (435)
Q Consensus       250 ~~~~e~~~~~~~~--------~--~~------------~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~  307 (435)
                       .+.++...++..        .  .+            ...+....++.+....   +++..+++.+++.++|..+..-.
T Consensus       139 -t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~  214 (546)
T PRK14869        139 -SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVS  214 (546)
T ss_pred             -CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCC
Confidence             001110000000        0  00            0001122455554333   44556788999999998642200


Q ss_pred             CC------CCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC-CCceEecCCCCHHHHHHHH
Q 013832          308 GS------FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLL  380 (435)
Q Consensus       308 g~------~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~-~~v~tv~~d~~L~~a~~~m  380 (435)
                      ..      ...+..|.|..|..+....-.         +..+|.++            |. ++++++++++++.+|.++|
T Consensus       215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~~V~~i------------M~~~~~~~~~~~~~~~~~~~~m  273 (546)
T PRK14869        215 EDVLELAKENGVTVISTPYDTFTTARLIN---------QSIPVSYI------------MTTEDLVTFSKDDYLEDVKEVM  273 (546)
T ss_pred             HHHHHHHHhCCCeEEEecccHHHHHHHhh---------cCCCHHHh------------ccCCCcEEECCCCcHHHHHHHH
Confidence            00      003778888888877655321         12344444            44 5789999999999999999


Q ss_pred             HHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          381 VQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       381 ~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      .+++++++||||++|+++|++|++|+++..++
T Consensus       274 ~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~  305 (546)
T PRK14869        274 LKSRYRSYPVVDEDGKVVGVISRYHLLSPVRK  305 (546)
T ss_pred             HhcCCCceEEEcCCCCEEEEEEHHHhhccccC
Confidence            99999999999999999999999999986654

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.2e-13  Score=113.92  Aligned_cols=120  Identities=16%  Similarity=0.262  Sum_probs=91.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+++++++||+++  ..+   +++|+++..|+++++..+.............++.       
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~-------   69 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLR-------   69 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhh-------
Confidence            5678999999999999999999999999973  225   7999999999998775432211100000000010       


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                         ..+.+.+++.++++++++.+|+++|.+++++++||+|++|+++|+||++||.
T Consensus        70 ---~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          70 ---DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ---hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence               0112345888999999999999999999999999999989999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.49  E-value=3.4e-13  Score=112.57  Aligned_cols=108  Identities=14%  Similarity=0.274  Sum_probs=88.6

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832          274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  353 (435)
Q Consensus       274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~  353 (435)
                      ++++.+++++.+|++.|.+++.+.+||+++   ++   +++|++|..|+++....         .+...++.++      
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---------~~~~~~v~~~------   61 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---------DYETLKVCEV------   61 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---------cccccChhhe------
Confidence            568899999999999999999999999963   45   79999999999763211         0112334443      


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            |..++.++.+++++.+|+++|.+++.+.+||||++|+++|+||++|+++
T Consensus        62 ------~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          62 ------YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ------eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence                  2347789999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.5e-13  Score=110.91  Aligned_cols=111  Identities=19%  Similarity=0.267  Sum_probs=90.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832          274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  353 (435)
Q Consensus       274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~  353 (435)
                      +.++.+++++.+|++.|.+++...+||+++   +|   +++|++|..++++.+......      ....++.++      
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~~~------   64 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVENV------   64 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------cccCCHHHH------
Confidence            567899999999999999999999999963   45   799999999998765431000      112333333      


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            +.++++++.+++++.+|++.|.+++...+||+|++|+++|+|+++|++.
T Consensus        65 ------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          65 ------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence                  3357889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=5.4e-13  Score=112.46  Aligned_cols=113  Identities=22%  Similarity=0.349  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.++++..+||++.   .+   +++|++|..+|++...... .      ....++.+++.  .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~~~~~~~~~--~   66 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQKVPVGVIMT--R   66 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccCCCHHHHhC--C
Confidence            5678999999999999999999999999963   34   7999999999988764221 0      01122333321  0


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~---g~lvGiis~~DI~~  408 (435)
                              ..++.++++++++.+|+++|.+++++.+||||++   |+++|+||++||++
T Consensus        67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          67 --------MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             --------CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                    0267899999999999999999999999999987   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.46  E-value=7e-13  Score=112.25  Aligned_cols=122  Identities=20%  Similarity=0.355  Sum_probs=93.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.++++.|.+++++++||+++   +|   +++|+++..++++++......  .....+.......    
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~~~~~~~----   69 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR--PLRGRLRGRDKPE----   69 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc--hhhhhhhcccccc----
Confidence            56789999999999999999999999999963   35   799999999998766532110  0000000000011    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                         .+++.+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+|+++|+++
T Consensus        70 ---~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          70 ---TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ---cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence               123344568899999999999999999999999999998999999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.44  E-value=6.3e-13  Score=114.96  Aligned_cols=116  Identities=20%  Similarity=0.384  Sum_probs=94.6

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.+|++++.|++++.+|+++|.+++++.+||++.    +   +++|-||+++|.+.+.+....      .-+..+++  
T Consensus        70 iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~e~------i~~~~vr~--  134 (187)
T COG3620          70 IMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGMES------IRSLRVRE--  134 (187)
T ss_pred             hccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccccc------hhhhhHHH--
Confidence            69999999999999999999999999999999962    4   799999999999987654211      11233333  


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                .|..+++++++++++..+-.++..  ..++-|+ ++|+++||||+.||+++++.
T Consensus       135 ----------vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         135 ----------VMGEPFPTVSPDESLNVISQLLEE--HPAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ----------HhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence                      345689999999999888888755  4567788 58999999999999998764

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3e-12  Score=107.03  Aligned_cols=112  Identities=17%  Similarity=0.288  Sum_probs=90.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++.+.+||+++  ..+   +++|++|.+|+++.+......      ....++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~-----   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEI-----   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHH-----
Confidence            4678999999999999999999999999963  224   799999999998866532111      011233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             |.+++.++++++++.+|+++|.+++...+||+|+ |+++|+|++.||++
T Consensus        66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          66 -------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             -------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                   2357889999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.7e-12  Score=105.86  Aligned_cols=94  Identities=17%  Similarity=0.296  Sum_probs=83.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++++.+||++.   .|   +++|+++.+|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence            5678999999999999999999999999963   35   799999999996410                          


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                                .+.++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1457899999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.41  E-value=3.6e-12  Score=105.53  Aligned_cols=108  Identities=23%  Similarity=0.449  Sum_probs=90.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.+|++.|.+++.+.+||+++   +|   +++|++|..++++.+....           .++.++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~----   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KSVEDI----   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cCHHHh----
Confidence            56788999999999999999999999999963   35   7999999999987654321           112222    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              +.+++.++.+++++.+|++.|.+++.+.+||++++|+++|++++.||++
T Consensus        61 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          61 --------MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             --------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                    2247888999999999999999999999999999999999999999875

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=5.7e-12  Score=106.44  Aligned_cols=119  Identities=23%  Similarity=0.298  Sum_probs=90.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|++.|.++++..+||+|. +++++|++|..|+...+..........        .+   .+.+... 
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~--------~~---~~~~~~~-   68 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDL--------TV---GEALERR-   68 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccC--------CH---HHHHhhc-
Confidence            4678999999999999999999999999986 589999999999986543211100000        01   1100000 


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                             ..|..++.++.+++++.+|++.|.+++++.+||++.   .|   +++|++|++|++++
T Consensus        69 -------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~  120 (120)
T cd04641          69 -------SQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF  120 (120)
T ss_pred             -------ccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence                   024567889999999999999999999999999963   35   79999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.40  E-value=5.7e-12  Score=105.06  Aligned_cols=109  Identities=19%  Similarity=0.356  Sum_probs=89.3

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832          274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  353 (435)
Q Consensus       274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~  353 (435)
                      .+++.+++++.+|++.|.+.+.+.+||+++   ++   +++|++|.+|+++.+.....        ...++.++      
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~------   63 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEV------   63 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHh------
Confidence            467899999999999999999999999963   35   79999999999876543210        12233333      


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            +..++.++.+++++.+|+++|.+++.+.+||||++|+++|+||++||+.
T Consensus        64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          64 ------MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             ------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence                  2346788999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.7e-12  Score=108.01  Aligned_cols=121  Identities=17%  Similarity=0.276  Sum_probs=91.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccc---cccC
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC---AIPV  349 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~---~l~i  349 (435)
                      .++++.+++++.+|++.|.++++..+||++.   .|   +++|+++..|+++.........       ..++.   ++..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-------~~~~~~~~~~~~   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL-------LYRTITFKELSE   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh-------cccchhhhhhhh
Confidence            3678999999999999999999999999963   35   7999999999988664321100       00000   0000


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                       .. ....+.+.+++.++.+++++.+|+++|.+++++++||||++|+++|+||.+||++
T Consensus        69 -~~-~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 -KF-TDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             -hc-ccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence             00 0011234468899999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.40  E-value=3.1e-12  Score=106.85  Aligned_cols=111  Identities=14%  Similarity=0.256  Sum_probs=88.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++.++.+++++.+|++.|.+++ .+.+||+++   .+   +++|+++..||++......         ...++.+++.  
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~~~--   64 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQVMT--   64 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhhhhc--
Confidence            5678999999999999998775 899999963   34   7999999999987654221         1233443321  


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      .        ..++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..||++
T Consensus        65 ~--------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          65 P--------AAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             c--------cccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            0        013568999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.39  E-value=1.3e-12  Score=111.64  Aligned_cols=113  Identities=12%  Similarity=0.194  Sum_probs=91.2

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.++.++.+|++.|.+++++.+||++.   ++   +++|++|..++++.+......       ...++.++    
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~i----   64 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDPVSKA----   64 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCcHHHH----
Confidence            46788999999999999999999999999963   34   799999999998876543111       12344444    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHH---------HHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLL---------VQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m---------~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                              |.+++.++.+++++.+|.++|         .+.+.+++||+|++|+++|+||++||+++
T Consensus        65 --------m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          65 --------LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --------hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence                    446888999999999999965         34478899999988999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=5.3e-12  Score=104.69  Aligned_cols=109  Identities=23%  Similarity=0.447  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+.+...+||++.   +|   +++|+++..++++++.....         ..++.++     
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~-----   61 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRGV-----   61 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHH-----
Confidence            4677899999999999999899999999963   35   79999999999887653211         1233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++||..
T Consensus        62 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          62 -------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             -------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                   2347889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=9.7e-12  Score=103.05  Aligned_cols=111  Identities=20%  Similarity=0.393  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.++.++.+|++.|.+++++++||+++   ++   +++|+++..++++++......      ....++.++     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~-----   64 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEI-----   64 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHh-----
Confidence            4678899999999999999999999999963   34   799999999999877543111      001233332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+++++|.+.+.+.+||+++ |+++|+||.+||++
T Consensus        65 -------~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          65 -------MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             -------cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence                   3357889999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.38  E-value=7.3e-12  Score=102.95  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.++.++.+|++.|.+++.+.+||+++   +|   +++|++|..||++...              .++.++     
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~~~~~-----   56 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GCCGDH-----   56 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cchhhh-----
Confidence            4568899999999999999999999999962   45   7999999999975321              112222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++..++.+++++.+|+++|.++++..+||+|++|+++|+|+++|+++
T Consensus        57 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          57 -------AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             -------cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                   2245678999999999999999999999999999899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.38  E-value=7.8e-12  Score=103.66  Aligned_cols=109  Identities=15%  Similarity=0.265  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.++.++.+|++.|.+.+.+.+||+++  ..+   +++|+++..++++++.....         ..++..+     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~-----   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL-----   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence            3678999999999999999999999999963  215   79999999999987643210         0122222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      +        +++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|++|+++
T Consensus        63 ~--------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 L--------RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             h--------cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            1        36788999999999999999999999999999899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.2e-11  Score=102.80  Aligned_cols=110  Identities=20%  Similarity=0.410  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|.+.|.+.+.+.+||+++   ++   +++|+++..++++.+.....        ...++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~-----   62 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTPVSEI-----   62 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccCHHHh-----
Confidence            4678899999999999999999999999963   35   79999999999887654321        12233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++++++.+++++.+++++|.++++..+||+|++|+++|+++++||++
T Consensus        63 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          63 -------MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             -------ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                   2347889999999999999999999999999998899999999999873

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=5e-12  Score=105.55  Aligned_cols=114  Identities=18%  Similarity=0.319  Sum_probs=88.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      .++++.+++++.+|++.|.+++++.+||++.   ++   +++|+++.+++++++........  ..+...++.+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~------   67 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVID------   67 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHH------
Confidence            4678999999999999999999999999962   45   79999999999987753211100  0000122332      


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            .+.+++.++.+++++.+|+++|.+++  .+||+|++|+++|+||+.|+++
T Consensus        68 ------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          68 ------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             ------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence                  23457889999999999999998865  5999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.37  E-value=8.1e-12  Score=104.45  Aligned_cols=111  Identities=17%  Similarity=0.355  Sum_probs=89.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+.+++.+||+++   .+   +++|+++..|+++.+......       ...++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~-----   63 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPSAVDEV-----   63 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccccHHHh-----
Confidence            4567889999999999999999999999963   35   799999999998866532100       01122222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~--g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+|+++|.+++.+.+||+|++  |+++|+||++||+.
T Consensus        64 -------~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          64 -------ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             -------ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence                   23578889999999999999999999999999987  89999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=5.6e-12  Score=107.51  Aligned_cols=125  Identities=26%  Similarity=0.351  Sum_probs=91.0

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++++++++++.+|++.|.++++..+||+|+. ++++|+++..|+.............. ...   . . ........  
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~---~-~-~~~~~~~~--   72 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYR-TIT---F-K-ELSEKFTD--   72 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhccc-chh---h-h-hhhhhccc--
Confidence            67889999999999999999999999999975 89999999999987543111100000 000   0 0 00000000  


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                           ....+..+++++.+++++.+|+++|.+++.+++||+++   ++   +++|++|.+||++|
T Consensus        73 -----~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~  126 (126)
T cd04642          73 -----SDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI  126 (126)
T ss_pred             -----ccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence                 00125678899999999999999999999999999963   35   79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.36  E-value=4.2e-12  Score=129.66  Aligned_cols=118  Identities=20%  Similarity=0.317  Sum_probs=101.0

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .+..++++|+|..|+.+|+.+|.+.|++++.+++.   ++   ..+||+|.+|+.+.+....+.       ..++|    
T Consensus       154 ~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V----  216 (610)
T COG2905         154 VKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQKV----  216 (610)
T ss_pred             HhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cccch----
Confidence            46789999999999999999999999999999963   34   689999999999888764222       12333    


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                              ++.|..|++++...+.+++|+-+|.+++|+++||++ +|+++|+|+.+||+++...
T Consensus       217 --------~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         217 --------SEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             --------hhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                    444567999999999999999999999999999996 6999999999999999884

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.2e-11  Score=104.35  Aligned_cols=118  Identities=21%  Similarity=0.451  Sum_probs=91.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCc--cccccccccccCc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--PILKLPICAIPVG  350 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~--~~~~~~v~~l~ig  350 (435)
                      +++++.+++++.+|++.|.+.+++.+||++.   +|   +++|+++..+|++++...........  .....++.     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~-----   70 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVA-----   70 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccccccccccCcCHH-----
Confidence            4678999999999999999999999999963   35   79999999999987654321100000  00011222     


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|++|+.||+.
T Consensus        71 -------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          71 -------EVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             -------HhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence                   223457889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=9e-12  Score=124.38  Aligned_cols=115  Identities=16%  Similarity=0.192  Sum_probs=93.1

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.+  +++++.+++++.+|++.|.+++...+||++   ++|   +++|++|.+|+.+.+....       .+...++.+
T Consensus       207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~v~~  273 (326)
T PRK10892        207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQASIAD  273 (326)
T ss_pred             HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccCCHHH
Confidence            4665  899999999999999999999988888885   345   7999999999977543210       111233443


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                      +            |.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus       274 i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        274 V------------MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             h------------cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            3            446889999999999999999999999999998 5899999999999863

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.8e-11  Score=102.25  Aligned_cols=110  Identities=22%  Similarity=0.362  Sum_probs=86.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++.++.++.++.+|++.|.+++ ...+||.+    .+   +++|+++..|+++++.....       ....++.++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~----   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEV----   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHh----
Confidence            4567899999999999998888 66677774    24   79999999999886643210       011233333    


Q ss_pred             cccccCCCCCCCceEecCC--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d--~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              +.++++++.++  +++.+|+++|.+++.+.+||+|++|+++|+||++||++
T Consensus        64 --------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          64 --------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             --------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                    23477888887  78999999999999999999999899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.35  E-value=1.5e-11  Score=102.64  Aligned_cols=111  Identities=26%  Similarity=0.507  Sum_probs=93.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      +...++++.++.++.+|...|.++++..+||++.    .   +++|++|.+|+++.+.......        .++.+   
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~~v~~---   66 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------LPVKE---   66 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------ccHHH---
Confidence            4477899999999999999999999999999952    2   5999999999999887543220        02222   


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEeHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT  407 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~-~~i~~lPVVD~~g-~lvGiis~~DI~  407 (435)
                               .|.++++++.+++++.+|+++|.+ ++++++||+|+++ +++|++|++|++
T Consensus        67 ---------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          67 ---------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             ---------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                     234588999999999999999999 7999999999986 999999999973

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=2.2e-11  Score=100.72  Aligned_cols=108  Identities=23%  Similarity=0.422  Sum_probs=89.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++++.......         ..++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~-----   60 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKDV-----   60 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHHH-----
Confidence            567899999999999999999999999996   2 5   79999999999876543210         1223332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +..++.++.+++++.+++++|.+.+++.+||+|++|+++|+|++.||++
T Consensus        61 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          61 -------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             -------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                   2347889999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.34  E-value=1.4e-11  Score=103.44  Aligned_cols=120  Identities=19%  Similarity=0.290  Sum_probs=91.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.++.++.+|++.|.+.+...+||+++    +   +++|+++..+++++..........         .+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~~---------~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLDI---------WELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhcccccccc---------hhhhhhhc
Confidence            4678899999999999999999999999962    5   799999999998876532211100         00000000


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ...+.+.+.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            00122334467889999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=3.3e-11  Score=125.41  Aligned_cols=180  Identities=13%  Similarity=0.168  Sum_probs=124.7

Q ss_pred             ceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCC
Q 013832          204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN  280 (435)
Q Consensus       204 ~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~  280 (435)
                      ..+|++.+    ....+|..++...+++.+--+   .+++.+        .+.+.......     ...|.++++++.++
T Consensus        43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~--------~q~~~l~~VKv-----~~iMi~~pvtv~~d  105 (479)
T PRK07807         43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIPID--------VVAEVVAWVKS-----RDLVFDTPVTLSPD  105 (479)
T ss_pred             cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCCHH--------HHHHHHhhccc-----ccccccCCeEECCC
Confidence            44788864    255677778777776654111   233322        22222111111     12477899999999


Q ss_pred             CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCC
Q 013832          281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN  360 (435)
Q Consensus       281 ~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~  360 (435)
                      +++.+|++.|.+++++.+||+|   +++   +++|+||.+|+...     ..        ..++.++            |
T Consensus       106 ~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~-----~~--------~~~V~di------------M  154 (479)
T PRK07807        106 DTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV-----DR--------FTQVRDV------------M  154 (479)
T ss_pred             CCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC-----cc--------CCCHHHh------------c
Confidence            9999999999999999999996   245   79999999998321     00        1334444            3


Q ss_pred             CCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCCCCCccHHHHHhhh
Q 013832          361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVS  432 (435)
Q Consensus       361 ~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~~~  432 (435)
                      .++++++++++++.+|+++|.+++++.+||||++|+++|+||++||++......... .=..+.|..+...+
T Consensus       155 t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~-~~g~l~V~aav~~~  225 (479)
T PRK07807        155 STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVD-AAGRLRVAAAVGIN  225 (479)
T ss_pred             cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhh-hhhccchHhhhccC
Confidence            458999999999999999999999999999999999999999999998765542111 00134556655443

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.34  E-value=1.2e-11  Score=123.15  Aligned_cols=115  Identities=14%  Similarity=0.180  Sum_probs=95.2

Q ss_pred             cCCCC--ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~~--~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.++  ++++.+++++.+|++.|.+.+...+||+|+   +|   +++|++|..|+.+.+....        ....++.+
T Consensus       202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v~~  267 (321)
T PRK11543        202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------ALTTPVNE  267 (321)
T ss_pred             HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------CcCCcHHH
Confidence            36676  999999999999999999999999999963   45   7999999999987654210        01223333


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                      +            |.+++.++.+++++.+|+++|.++++..+||||++|+++|+||++||+++
T Consensus       268 i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        268 A------------MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             h------------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            3            34578899999999999999999999999999988999999999999863

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.34  E-value=2.5e-11  Score=100.50  Aligned_cols=108  Identities=19%  Similarity=0.389  Sum_probs=89.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.++.++.+|.+.|.+.+...+||++   + +   +++|+++..++++.+....         ...++.++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~----   61 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDY----   61 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHH----
Confidence            4678899999999999999999999999996   2 4   7999999999987653221         12334433    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              +.++..++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.||++
T Consensus        62 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          62 --------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             --------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                    234778899999999999999999999999999 789999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.34  E-value=1.9e-11  Score=101.47  Aligned_cols=109  Identities=15%  Similarity=0.303  Sum_probs=88.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+.+.+.+||+++   .|   +++|+++..|++.+.....        ....++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~-----   62 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFNI-----   62 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHHH-----
Confidence            4678899999999999999999999999963   35   7999999999986543210        012334333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||+.||+.
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          63 -------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             -------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence                   2357889999999999999999999999999997 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.3e-11  Score=104.55  Aligned_cols=119  Identities=22%  Similarity=0.403  Sum_probs=92.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC----cccccccccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKLPICAIP  348 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~----~~~~~~~v~~l~  348 (435)
                      +++++.++.++.+|+++|.+.+.+.+||++.  ++|   +++|+++..++++++..........    ......++.   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---   73 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVR---   73 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHH---
Confidence            4678899999999999999999999999963  225   7999999999998775432110000    000112222   


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                               +.+.++++++++++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus        74 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          74 ---------SIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             ---------HHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence                     233457889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.33  E-value=1.4e-11  Score=102.78  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=87.1

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|++.|.+++...+||+|. .++++|++|..|+..+...           +....++   .+      
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~-----------~~~~~~v---~~------   60 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGPN-----------DYETLKV---CE------   60 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhccc-----------cccccCh---hh------
Confidence            4678999999999999999999999999996 4799999999998753110           0000011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..++.++.+++++.+|+++|.+++.+.+||++.   ++   +++|++|.+|+++
T Consensus        61 --------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~  110 (111)
T cd04603          61 --------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLR  110 (111)
T ss_pred             --------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhc
Confidence                    25567789999999999999999999999999963   35   7999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.6e-11  Score=102.11  Aligned_cols=112  Identities=21%  Similarity=0.342  Sum_probs=90.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+++.+.+||+++   ++   +++|+++..++++.+.......     ....++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~-----   65 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDI-----   65 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHH-----
Confidence            4678999999999999999999999999963   45   7999999999998765432110     011233332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus        66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          66 -------MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             -------hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence                   2346788999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.33  E-value=1.8e-11  Score=101.48  Aligned_cols=109  Identities=21%  Similarity=0.400  Sum_probs=88.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.++.++.+|.+.|.+++.+++||+++    +   +++|+++..++++.+....  .     ....++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~--~-----~~~~~i~~~-----   62 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEG--L-----DPDTPVSEV-----   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccC--C-----CccCCHHHH-----
Confidence            5678999999999999999999999999962    4   7999999999987654320  0     011233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++++++.+++++.+|+++|.+++.+.+||+++ |+++|+++++||++
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                   2357889999999999999999999999999997 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.3e-11  Score=101.15  Aligned_cols=110  Identities=15%  Similarity=0.256  Sum_probs=89.1

Q ss_pred             ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccc
Q 013832          274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  353 (435)
Q Consensus       274 ~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~  353 (435)
                      +..+.+++++.+|++.|.+.+.+.+||++.   ++   +++|+++..++++.+.... .      +...++.++      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-~------~~~~~i~~~------   63 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-E------LKDAKVREV------   63 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-h------hcCCcHHHh------
Confidence            567899999999999999999999999963   34   7999999999987544321 0      011233333      


Q ss_pred             cccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          354 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       354 ~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            +.+++.++.+++++.++++.|.+++...+||+|++|+++|++++.||++
T Consensus        64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          64 ------MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             ------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                  2347888999999999999999999999999999899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.33  E-value=3.2e-11  Score=99.33  Aligned_cols=106  Identities=22%  Similarity=0.362  Sum_probs=88.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++..+.++.++.+|+..|.+++...+||+++   ++   +++|+++..|+++.....            .++.++     
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v~~~-----   59 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSLEDI-----   59 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcHhHh-----
Confidence            5677899999999999999999999999963   35   799999999998654211            223222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+.+.++++++++.+|++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus        60 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          60 -------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             -------hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                   2246778999999999999999999999999999899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.32  E-value=1.3e-11  Score=106.56  Aligned_cols=118  Identities=19%  Similarity=0.358  Sum_probs=90.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-C------c-------
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-S------L-------  337 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-~------~-------  337 (435)
                      +++.++.+++++.+|++.|.+.+.+++||+++   .+   +++|+++..++++.+...+..... .      .       
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            56788999999999999999999999999963   35   799999999998765432110000 0      0       


Q ss_pred             -cccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          338 -PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       338 -~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                       .....++            .+.+.+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+|++.|+++
T Consensus        76 ~~~~~~~v------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKV------------ADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCH------------HHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence             0001112            223345788999999999999999999999999999 899999999999874

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.2e-11  Score=101.61  Aligned_cols=114  Identities=16%  Similarity=0.260  Sum_probs=88.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|++.|.++++..+||.|.+ ++++|++|..|++........         ....+++   +.     
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~---------~~~~~~~---~~-----   63 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGAD---------LQKVPVG---VI-----   63 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCC---------ccCCCHH---HH-----
Confidence            56789999999999999999999999999964 789999999998876532110         1111121   11     


Q ss_pred             ccccCCCccCC--CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~--~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |.  .++.++.+++++.+|+++|.+++++.+||++++...+   +++|+||.++|++
T Consensus        64 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~---~l~Gvit~~~l~~  117 (118)
T cd04617          64 ---------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL---EVIGRITKTNITK  117 (118)
T ss_pred             ---------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc---eEEEEEEhhheec
Confidence                     33  3678999999999999999999999999997421125   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.2e-11  Score=102.57  Aligned_cols=119  Identities=24%  Similarity=0.501  Sum_probs=90.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+.+.+++||++   + |   +++|++|..++++++.........  .....+..+..++  
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~--   70 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNLPVS--   70 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhccCHH--
Confidence            567899999999999999999999999996   2 5   899999999998876532211000  0000111111111  


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                           +.+.++..++.+++++.+|+++|.+.+.+.+||+|+ |+++|+||++||++
T Consensus        71 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          71 -----DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             -----HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence                 223457889999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=2.5e-11  Score=100.85  Aligned_cols=111  Identities=22%  Similarity=0.413  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.++++.|.+.+.+.+||+++   ++   +++|+++..++++.+......       ...++.++     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~-----   64 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADV-----   64 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccCCHHHh-----
Confidence            4667899999999999999888999999963   35   799999999999877643211       01233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++..++.+++++.+|+++|.+++...+||+|++|+++|+|++.||++
T Consensus        65 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          65 -------MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             -------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence                   3346788999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.31  E-value=2.6e-11  Score=100.26  Aligned_cols=105  Identities=18%  Similarity=0.314  Sum_probs=88.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|+..|.+.+.+.+||++.   +|   +++|+++..+++...       .      ..++.+++    
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------~------~~~v~~~~----   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------P------DTTIEKVM----   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------c------cccHHHHh----
Confidence            5778999999999999999999999999963   45   799999999996421       0      12333332    


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              ..+..++.+++++.+|+++|.+++.+.+||+|++|+++|++++.|+++
T Consensus        60 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          60 --------TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             --------cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                    246788999999999999999999999999999999999999999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=5.3e-11  Score=99.61  Aligned_cols=112  Identities=23%  Similarity=0.427  Sum_probs=89.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +|.++++++|+.+|++.|.+.+...+||+|++ ++++|++|..|+...+.......        ....+   .+.     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~--------~~~~v---~~~-----   64 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPG--------CTAPV---ENV-----   64 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------ccCCH---HHH-----
Confidence            47789999999999999999999999999964 79999999999987553211000        00011   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..+++++.+++++.+|++.|.+++...+||++.   ++   +++|++|.+|+++
T Consensus        65 ---------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~  113 (114)
T cd04619          65 ---------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK  113 (114)
T ss_pred             ---------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence                     4567889999999999999999999999999963   35   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.31  E-value=3.9e-11  Score=99.66  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++.+.+||++   . +   +++|+++..++++.+.....      .....++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~------~~~~~~v~~i-----   63 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGL------DPESTLVERV-----   63 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCC------CcCcCCHHHh-----
Confidence            467789999999999999999999999996   2 5   79999999999865443210      0001233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++..++.+++++.+|+++|.+++..++||+|++|+++|+||..||+.
T Consensus        64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          64 -------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             -------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                   2346788999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.2e-11  Score=102.85  Aligned_cols=117  Identities=20%  Similarity=0.346  Sum_probs=91.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC---ccccccccccccC
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS---LPILKLPICAIPV  349 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~---~~~~~~~v~~l~i  349 (435)
                      +++++.+++++.+|++.|.+.+++++||++   + |   +++|+++..++++.+..........   ......++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----   69 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRA-----   69 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHH-----
Confidence            467899999999999999999999999996   2 5   7999999999998776432110000   00001122     


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             ++.+.++++++.+++++.+|++.|.+++.+.+||+|++|+++|++++.|+++
T Consensus        70 -------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          70 -------HQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             -------HHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence                   2233457889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=2.8e-11  Score=104.07  Aligned_cols=125  Identities=18%  Similarity=0.350  Sum_probs=90.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC---Ccccc--ccccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPIL--KLPICAI  347 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~---~~~~~--~~~v~~l  347 (435)
                      +++++.+++++.+|++.|.+.+++++||+++   ++   +++|+++..++++++.........   ..-.+  ......+
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            4678999999999999999999999999963   35   799999999999877543211000   00000  0000000


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ..    ..+++.+.+++..+.+++++.+|+++|.+++.+.+||+|+ |+++|+++++|+++
T Consensus        76 ~~----~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 LG----KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             cC----CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            00    0122334467889999999999999999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.30  E-value=6.1e-11  Score=116.41  Aligned_cols=164  Identities=12%  Similarity=0.205  Sum_probs=120.1

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.++|..-.++++++.+.|+.++...+.+++...+||++.+.++++|+++..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            56789999998767899999999999999999999999999998755789999999999864421   10000       


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       .+   ++.              | ++++++.+++++.++++.|.+++.+.+||+|   +.|   .++|+||..||++.+
T Consensus       134 -~l---~~l--------------~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viGiVTleDIle~i  188 (292)
T PRK15094        134 -SM---DKV--------------L-RQAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELI  188 (292)
T ss_pred             -CH---HHH--------------c-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEEEeEHHHHHHHH
Confidence             11   111              3 3455899999999999999999999999996   345   699999999999998


Q ss_pred             HhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHH
Q 013832          327 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL  380 (435)
Q Consensus       327 ~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m  380 (435)
                      ...........  -...+..+.-|             -..+....+|.+..+.+
T Consensus       189 vGei~de~d~~--~~~~i~~~~~~-------------~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        189 VGEIEDEYDEE--DDIDFRQLSRH-------------TWTVRALASIEDFNEAF  227 (292)
T ss_pred             hCCCccccccc--cccccEEeCCC-------------eEEEEeccCHHHHHHHh
Confidence            86543211100  00112222222             34577777888777776

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.30  E-value=4.5e-11  Score=98.79  Aligned_cols=109  Identities=20%  Similarity=0.400  Sum_probs=89.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+.+.+.+||++.    +   +++|+++.++++++......        ...++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~-----   61 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQTPVGEV-----   61 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHh-----
Confidence            4567899999999999999999999999962    5   79999999999887653210        12233332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+++||++
T Consensus        62 -------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          62 -------MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             -------cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                   2357888999999999999999999999999998899999999999874

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.30  E-value=5.5e-11  Score=122.07  Aligned_cols=161  Identities=17%  Similarity=0.216  Sum_probs=122.0

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |++.++.|+|.+-.++++++.++|+.++.+.+.+++.+++||++++.++++|+++..|++..+.   .  ..        
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~--------  254 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN--------  254 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------
Confidence            3578999999888899999999999999999999999999999976679999999999975321   1  00        


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      ..+   ++.              + +++.++++++++.++++.|.+++.|.++|+|   +.|   .++||||..||++.+
T Consensus       255 ~~l---~~~--------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDileei  310 (408)
T TIGR03520       255 FDW---QSL--------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIEEI  310 (408)
T ss_pred             CCH---HHH--------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHHHH
Confidence            111   111              3 4678999999999999999999999999996   345   699999999999998


Q ss_pred             HhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHH
Q 013832          327 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL  380 (435)
Q Consensus       327 ~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m  380 (435)
                      .........   .-...+..+.-             .-..+....++.++.+.|
T Consensus       311 vgei~de~d---~~~~~i~~~~~-------------~~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       311 VGDISDEFD---DEDLIYSKIDD-------------NNYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             hCCCCCcCC---cCccceEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence            754322110   00111222221             334577888899888887

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=4e-11  Score=104.07  Aligned_cols=128  Identities=16%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc-cCCCcccc-c---cccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH-CSSSLPIL-K---LPICAI  347 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~-~~~~~~~~-~---~~v~~l  347 (435)
                      +++++.+++++.+|++.|.+++.+.+||+|+   .+   +++|+++..++++++...... .+.. .++ .   .+-...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   74 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKK-SIKMKRKAGQKRYR   74 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchh-hhhhhhhccccccc
Confidence            3567899999999999999999999999963   45   799999999999876432110 0000 000 0   000000


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ........+.+.+.+++.++.+++++.+|++.|.+++.+.+||+++ |+++|+||++||++
T Consensus        75 ~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          75 YVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            0000001133445567889999999999999999999999999986 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.29  E-value=3.9e-11  Score=99.57  Aligned_cols=111  Identities=26%  Similarity=0.387  Sum_probs=90.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.+|++.|.+.++..+||++.   .+   +++|+++..++++++.....       ....++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~~~-----   63 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL-------YDLVVASDI-----   63 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc-------cccEEHHHh-----
Confidence            5678999999999999999999999999963   35   79999999999876542210       001233332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..||+.
T Consensus        64 -------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          64 -------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             -------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence                   3457889999999999999999999999999997 799999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.29  E-value=5.6e-11  Score=98.22  Aligned_cols=109  Identities=20%  Similarity=0.330  Sum_probs=89.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+.+.+++||++   + +   +++|+++..|+++........        ..++.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~~~~------   60 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVLVGD------   60 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccCHHH------
Confidence            567899999999999999999999999996   2 4   799999999998755421100        011222      


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            .+.+++.++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++
T Consensus        61 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          61 ------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence                  23357889999999999999999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=5.5e-11  Score=100.80  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=88.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|.+.|.++++.++||+|.+.++++|+++..|++..+........ .  .  +..    .+.....  
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~--~~~----~~~~~~~--   70 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-G--L--DPL----YPIPLRD--   70 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-c--h--hhh----hhhhhhh--
Confidence            456889999999999999999999999999643789999999999876543211100 0  0  000    0000000  


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI  322 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI  322 (435)
                            ...|..++.++.+++++.+|++.|.+++++.+||+++   .+   +++|+||.+||
T Consensus        71 ------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di  120 (123)
T cd04627          71 ------LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDV  120 (123)
T ss_pred             ------cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHh
Confidence                  0125678899999999999999999999999999963   35   79999999998

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=5.9e-11  Score=98.49  Aligned_cols=110  Identities=15%  Similarity=0.352  Sum_probs=87.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      .+.++.+++++.+|++.|.+++.+.++|.+    +|   +++|+++..++++++......      +...++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~-----   63 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAI-----   63 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHH-----
Confidence            356789999999999999888888888774    25   799999999999876532111      111233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+|+++|.+++...+||+| +|+++|++|++||++
T Consensus        64 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          64 -------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                   234678899999999999999999999999998 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=5.2e-11  Score=98.90  Aligned_cols=110  Identities=21%  Similarity=0.364  Sum_probs=88.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH-HHHhhhcccCCCccccccccccccCcc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~-~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      +++++.+++++.+|.+.|.+++.+.+||++   + |   +++|+++..+++. .+....       .....++.++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~~~----   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVGDV----   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCCHHHh----
Confidence            467899999999999999999999999996   2 5   7999999999873 332211       0011123333    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              +.+.+.++.+++++.++++.|.+.+.+++||+|++|+++|++++.|+++
T Consensus        64 --------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          64 --------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             --------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                    2346778999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=5.3e-11  Score=101.56  Aligned_cols=115  Identities=13%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh--hhcccCCCccccccccccccCc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG  350 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~--~~~~~~~~~~~~~~~v~~l~ig  350 (435)
                      +++++.+++++.+|++.|.+++.+.+||+++   .|   +++|+++..|+.+....  .....   ......++.+++  
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im--   70 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVM--   70 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhc--
Confidence            3578899999999999999999999999963   35   79999999999863210  00000   011123344443  


Q ss_pred             ccccccCCCCCCCc--eEe----cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 013832          351 TWVPKIGEPNRRPL--AML----RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA  408 (435)
Q Consensus       351 t~~~~~g~~~~~~v--~tv----~~d~~L~~a~~~m~~~~i~~lPVVD~~-g~lvGiis~~DI~~  408 (435)
                                .++.  +.+    .+++++.+|+++|.+++.+.+||||++ |+++|+||++||++
T Consensus        71 ----------~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          71 ----------TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ----------CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                      2222  233    378999999999999999999999987 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=1.1e-10  Score=96.94  Aligned_cols=110  Identities=21%  Similarity=0.396  Sum_probs=88.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+.+.+.+||+++    +   +++|+++..++++.+......      ....++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~-----   63 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVPVGEV-----   63 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCCHHHh-----
Confidence            5678899999999999999999999999962    3   699999999999866432100      011233333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++.+++++.+++++|.+++.+.+||||++ +++|+|+++||+.
T Consensus        64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          64 -------MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             -------cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                   23478889999999999999999999999999865 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=8.1e-11  Score=100.41  Aligned_cols=118  Identities=18%  Similarity=0.371  Sum_probs=89.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhc-ccCCC-----cccccccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HCSSS-----LPILKLPICA  346 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~-~~~~~-----~~~~~~~v~~  346 (435)
                      +++++.+++++.+|+++|.+.+++.+||++.   ++   +++|++|..++++++..... .....     ......++. 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   74 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVY-   74 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHH-
Confidence            4678899999999999999999999999963   35   79999999999876543210 00000     000112222 


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA  408 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD--~~g~lvGiis~~DI~~  408 (435)
                                 +.+.++++++.+++++.+|+++|.+.+...+||++  ++|+++|+||++||++
T Consensus        75 -----------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          75 -----------DAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             -----------HHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence                       23346888999999999999999999999999994  4689999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.27  E-value=6.7e-11  Score=98.89  Aligned_cols=109  Identities=20%  Similarity=0.323  Sum_probs=85.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|++.|.+++...+||++....+|   +++|+++..+++....      .      ..++.+++    
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~------~------~~~v~~~~----   63 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD------S------ETPLSEVM----   63 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc------c------CCCHHHhc----
Confidence            456788999999999999999999999997311145   7999999999863210      0      12233332    


Q ss_pred             ccccCCCCCCCceEecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~--d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              .++..++..  ++++.+|+++|.+++.+.+||||++|+++|+||++||+.
T Consensus        64 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          64 --------TPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             --------CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                    234555655  999999999999999999999999899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.27  E-value=7.4e-11  Score=97.83  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=88.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      .++++.++.++.+|++.|.+++...+||++   + +   +++|+++..++++.+.....       ....++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~-----   62 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEI-----   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHH-----
Confidence            456789999999999999999999999996   2 4   69999999999876542100       012333333     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++..+++++++.+++++|.+++...+||+|+ |+++|+|++.|+++
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence                   2357889999999999999999999999999985 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.27  E-value=8.7e-11  Score=122.09  Aligned_cols=168  Identities=18%  Similarity=0.281  Sum_probs=120.0

Q ss_pred             CCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEe
Q 013832          201 QGISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA  277 (435)
Q Consensus       201 ~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v  277 (435)
                      +=-..+|++.+.    ..-+|..++..++......+   .+++.++-..    .++..+..        ...|.++++++
T Consensus        30 ~~~l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~----~V~~Vk~~--------~~~~~~~~vtl   93 (450)
T TIGR01302        30 NIKLNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQAE----QVKRVKRA--------ENGIISDPVTI   93 (450)
T ss_pred             ccCcCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHHH----HHhhhccc--------cCceecCceEe
Confidence            334557888642    45579999888777655432   2232222111    11222111        11256788999


Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccC
Q 013832          278 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG  357 (435)
Q Consensus       278 ~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g  357 (435)
                      .+++++.+|++.|.+++++++||++++...+   +++|++|.+|++...     .       ...++.+++         
T Consensus        94 ~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dvm---------  149 (450)
T TIGR01302        94 SPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEVM---------  149 (450)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHhh---------
Confidence            9999999999999999999999997421114   799999999996321     0       123444442         


Q ss_pred             CCCC-CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          358 EPNR-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       358 ~~~~-~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                         . ++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       150 ---~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       150 ---TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             ---CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence               3 37899999999999999999999999999999999999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.9e-10  Score=96.08  Aligned_cols=112  Identities=21%  Similarity=0.375  Sum_probs=88.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.++.++.++.+|.+.|.++++..+||.|.+.++++|++|..|+...+.......        ...++   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~--------~~~~v---~~------   64 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP--------DRVNV---YE------   64 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC--------CccCH---HH------
Confidence            46789999999999999999999999999963379999999999987554311110        00111   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|..+++++.+++++.+|++.|.+++.+.+||++   + +   +++|++|..||++
T Consensus        65 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~  113 (114)
T cd04630          65 --------IMTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFL  113 (114)
T ss_pred             --------HhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhc
Confidence                    1456788999999999999999999999999995   2 5   7999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.26  E-value=5.4e-11  Score=124.70  Aligned_cols=167  Identities=17%  Similarity=0.220  Sum_probs=118.7

Q ss_pred             eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832          205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  281 (435)
Q Consensus       205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~  281 (435)
                      ..||+..    -.+.+|..++..++...+--+   .+.+.++..    ..++..+..      ..+  |.++++++.+++
T Consensus        54 ~~Pivsa----~M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q~----~~Irkvk~~------~~g--mi~dpvtV~pd~  117 (505)
T PLN02274         54 SIPCVSS----PMDTVTESDMAIAMAALGGIGIVHYNNTAEEQA----AIVRKAKSR------RVG--FVSDPVVKSPSS  117 (505)
T ss_pred             CCCEecc----CCcccchHHHHHHHHhCCCeEEEcCCCCHHHHH----HHHHHhhcc------ccc--ccCCCeeeCCCC
Confidence            4788753    247788888887776554221   122222211    112222211      123  568889999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832          282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  361 (435)
Q Consensus       282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~  361 (435)
                      ++.+|++.|.+++++.+||+++...++   +++|+||.+||... .           ....+|.+++.  ..        
T Consensus       118 tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~eIMt--~~--------  172 (505)
T PLN02274        118 TISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSEVMT--SD--------  172 (505)
T ss_pred             cHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHHHhc--cC--------
Confidence            999999999999999999997311135   89999999999532 1           11345555541  10        


Q ss_pred             CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       362 ~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      .+++++.+++++.+|+++|.+++++.+||||++++++|+||++||++....
T Consensus       173 ~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        173 DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            138899999999999999999999999999999999999999999987654

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.26  E-value=5.3e-11  Score=98.11  Aligned_cols=108  Identities=19%  Similarity=0.395  Sum_probs=86.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.+|+..|.+.+++.+||++   + +   +++|++|..++++++......       ...++.++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~-----   62 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREV-----   62 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHH-----
Confidence            467899999999999999999999999996   2 4   799999999999876533111       11223332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+++.++++++++.+|+++|.+ . ..+||||++|+++|+++++||++
T Consensus        63 -------~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          63 -------MGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             -------hcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence                   23467889999999999999988 3 45899998999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.26  E-value=6.9e-11  Score=122.89  Aligned_cols=160  Identities=17%  Similarity=0.181  Sum_probs=115.0

Q ss_pred             eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832          205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  281 (435)
Q Consensus       205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~  281 (435)
                      .+|++.+    ..--+|...+.-.+++.+--+   .+++        +..|.+.......     ...|.++++++.+++
T Consensus        43 ~~P~vsa----~mdtvTe~~MAi~~A~~GGigvIh~n~~--------i~~qae~v~~VKv-----~eim~~~pvtv~p~~  105 (475)
T TIGR01303        43 TIPLVVA----NMTAVAGRRMAETVARRGGIVILPQDLP--------IPAVKQTVAFVKS-----RDLVLDTPITLAPHD  105 (475)
T ss_pred             ccceeec----cchhhHHHHHHHHHHHCCCEEEEeCCCC--------HHHHHHHHhhcch-----hhccccCCeEECCCC
Confidence            4687764    244566666665556554211   2332        3333332222111     113667889999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832          282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  361 (435)
Q Consensus       282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~  361 (435)
                      ++.+|++.|.+++++.+||++    ++   +++|+||.+|+...        .     ...++.++            |.
T Consensus       106 tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~--------~-----~~~~V~dI------------Mt  153 (475)
T TIGR01303       106 TVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV--------D-----RFTQVRDI------------MS  153 (475)
T ss_pred             CHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC--------C-----CCCCHHHH------------cc
Confidence            999999999999999999985    24   79999999998311        0     01334444            34


Q ss_pred             CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       362 ~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ++++++++++++.+|+++|.+++++.+||||++|+++|+||++||++.....
T Consensus       154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            5899999999999999999999999999999999999999999999866554

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=5.4e-11  Score=100.28  Aligned_cols=118  Identities=19%  Similarity=0.341  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCc--cccccccccccCc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL--PILKLPICAIPVG  350 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~--~~~~~~v~~l~ig  350 (435)
                      +++++.+++++.+|++.|.+.+.+.+||++.   .|   +++|+++..++++.............  .....++.     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----   70 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVE-----   70 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccchhhhhhhccCcHH-----
Confidence            4678999999999999999999999999963   45   79999999999875321100000000  00011222     


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.+.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|+.||++
T Consensus        71 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          71 -------KIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             -------HHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence                   223457889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.25  E-value=1.1e-10  Score=101.15  Aligned_cols=122  Identities=20%  Similarity=0.366  Sum_probs=96.8

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..+|..+|  +++|+++.+++++.+|+++|.++|++-+||+++  +++||-+|..|+++.+.+-.        +++..++
T Consensus        64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~  131 (187)
T COG3620          64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR  131 (187)
T ss_pred             eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence            46788888  669999999999999999999999999999985  79999999999998765432        2233332


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                         .+++              |..+|.++++++++..+..++-  ...++.|+.    +|   +++||||..||++++..
T Consensus       132 ---vr~v--------------M~e~fP~Vs~~~~l~vI~~LL~--~~~AVlV~e----~G---~~vGIITk~DI~k~~~~  185 (187)
T COG3620         132 ---VREV--------------MGEPFPTVSPDESLNVISQLLE--EHPAVLVVE----NG---KVVGIITKADIMKLLAG  185 (187)
T ss_pred             ---HHHH--------------hcCCCCcCCCCCCHHHHHHHHh--hCCeEEEEe----CC---ceEEEEeHHHHHHHHhc
Confidence               2333              6789999999999987666554  345677773    56   89999999999998753

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.25  E-value=1.7e-10  Score=121.20  Aligned_cols=161  Identities=20%  Similarity=0.344  Sum_probs=118.3

Q ss_pred             eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832          205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  281 (435)
Q Consensus       205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~  281 (435)
                      .+|++.+.    .+.+|..++..++...+..+   .+++.++.... +..++..           +..|..+++++.+++
T Consensus        41 ~~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~-I~~vk~~-----------~dim~~~~v~i~~~~  104 (486)
T PRK05567         41 NIPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE-VRKVKRS-----------ESGVVTDPVTVTPDT  104 (486)
T ss_pred             CcCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH-HHHhhhh-----------hhcccCCCeEeCCCC
Confidence            38998752    45678889888777655332   12332222111 1111111           113678999999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832          282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  361 (435)
Q Consensus       282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~  361 (435)
                      ++.+|++.|.+++++++||+++   .+   +++|++|.+|+....     .       ...++.+++            .
T Consensus       105 tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~-----~-------~~~~V~dim------------~  154 (486)
T PRK05567        105 TLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET-----D-------LSQPVSEVM------------T  154 (486)
T ss_pred             CHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc-----c-------CCCcHHHHc------------C
Confidence            9999999999999999999963   45   899999999995321     0       123344432            2


Q ss_pred             -CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          362 -RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       362 -~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                       ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus       155 ~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        155 KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence             47899999999999999999999999999999999999999999998653

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.25  E-value=4.9e-11  Score=124.81  Aligned_cols=111  Identities=21%  Similarity=0.274  Sum_probs=91.1

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccc
Q 013832          275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP  354 (435)
Q Consensus       275 v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~  354 (435)
                      +++.|++++.+|++.|.+++++.+||+++..+++   +++||||..||...     .      .....++.+++.  .. 
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V~dIMt--~~-  170 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKVKDFMT--PF-  170 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCHHHHhC--CC-
Confidence            5899999999999999999999999997321245   89999999998521     0      012355665542  11 


Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       355 ~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                             .+++++.+++++.+|+++|.+++++.|||||++|+++|+||++||++.
T Consensus       171 -------~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        171 -------EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -------CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence                   278899999999999999999999999999999999999999999874

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.25  E-value=7.6e-11  Score=117.73  Aligned_cols=124  Identities=10%  Similarity=0.193  Sum_probs=97.7

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ...++.|+|....+++++++++|+.+|++.|.++++..+||+|+ +|+++|++|..|+..++....    .     +...
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~----~-----~~~~  269 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI----D-----LRQA  269 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC----C-----cccC
Confidence            44567888865447889999999999999999999988888885 489999999999876443110    0     0001


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ++   .+              +|.++++++.+++++.+|+++|.+++++++||++    ++   +++|+||.+||++.
T Consensus       270 ~v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~----~~---~lvGiit~~dil~~  323 (326)
T PRK10892        270 SI---AD--------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD----GD---HLLGVLHMHDLLRA  323 (326)
T ss_pred             CH---HH--------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee----CC---EEEEEEEhHHhHhc
Confidence            11   11              2778899999999999999999999999999995    34   79999999999864

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.2e-10  Score=94.88  Aligned_cols=94  Identities=21%  Similarity=0.381  Sum_probs=81.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      .++++.+++++.+|++.|.++++..+||.|+ .++++|++|..|+...                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~--------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK--------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence            4678899999999999999999999999996 4799999999997530                                


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                 ..+.++.+++++.+|+++|.+++++.+||+++   .+   +++|++|.+||++
T Consensus        49 -----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~   95 (96)
T cd04614          49 -----------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLK   95 (96)
T ss_pred             -----------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                       11568899999999999999999999999962   35   7999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.23  E-value=1.2e-10  Score=121.90  Aligned_cols=164  Identities=21%  Similarity=0.282  Sum_probs=116.4

Q ss_pred             ceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCC
Q 013832          204 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN  280 (435)
Q Consensus       204 ~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~  280 (435)
                      ...|++..    -..-+|...+...+.+.+-.+   .+++.|+...    .++.++..      ..|  +..+++++.++
T Consensus        49 l~~Pii~a----~M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~----~v~kvk~~------e~g--~i~dpvtv~pd  112 (495)
T PTZ00314         49 LKIPIVSS----PMDTVTEHKMAIAMALMGGIGVIHNNCSIEEQVE----EVRKVKRF------ENG--FIMDPYVLSPN  112 (495)
T ss_pred             cCCceeec----CccccccHHHHHHHHHCCCeEEecCCCCHHHHHH----HHhhcccc------ccc--cccCCeecCCC
Confidence            34788753    256677777776666554221   2333333221    12222211      112  55778899999


Q ss_pred             CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCC
Q 013832          281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN  360 (435)
Q Consensus       281 ~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~  360 (435)
                      +++.+|+++|.+++++.+||++++..++   +++||+|.+||.. ..    .       ...+|.+++            
T Consensus       113 ~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~----~-------~~~~V~diM------------  165 (495)
T PTZ00314        113 HTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK----D-------KSTPVSEVM------------  165 (495)
T ss_pred             CCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc----c-------CCCCHHHhh------------
Confidence            9999999999999999999997421135   8999999999852 11    0       124455543            


Q ss_pred             CC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          361 RR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       361 ~~--~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                      .+  +++++++++++.+|+++|.++++..+||||++++++|+||++||++..
T Consensus       166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence            23  789999999999999999999999999999999999999999999753

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=3e-10  Score=94.06  Aligned_cols=111  Identities=21%  Similarity=0.397  Sum_probs=88.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|.+.|.+++...+||.|++ ++++|+++..|++..+.......        ...++   .+      
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~--------~~~~~---~~------   63 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA--------LDTPV---SE------   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc--------cccCH---HH------
Confidence            56788999999999999999999999999964 79999999999987654221100        00011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..++.++.+++++.++++.|.+.+.+.+||++   + +   +++|++|.+||++
T Consensus        64 --------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~  112 (113)
T cd04623          64 --------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVK  112 (113)
T ss_pred             --------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhc
Confidence                    1556788999999999999999999999999996   2 5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.22  E-value=1.2e-10  Score=114.42  Aligned_cols=123  Identities=11%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|++  .++++.++.++.++++.+.+.+.+++||+++  ..+   +++|+++.+|++..+.....         ..++.+
T Consensus        72 iMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~~l~~  137 (292)
T PRK15094         72 IMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AFSMDK  137 (292)
T ss_pred             EccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cCCHHH
Confidence            4655  6899999999999999999999999999963  223   69999999999865431100         112222


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI  418 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l  418 (435)
                      ++             ++++++++++++.+|++.|.+++.+.+||||+.|.++|+||+.||+..+....+.+.
T Consensus       138 l~-------------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~  196 (292)
T PRK15094        138 VL-------------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEY  196 (292)
T ss_pred             Hc-------------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCcccc
Confidence            21             355689999999999999999999999999999999999999999998877655543

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.21  E-value=2.1e-10  Score=96.98  Aligned_cols=122  Identities=21%  Similarity=0.380  Sum_probs=90.3

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++++.+.++.+|++.|.++++..+||+|.+ ++++|+++..|++..+......  .. ...+. +..   .+.    
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~--~~-~~~~~-~~~---~~~----   69 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRR--PL-RGRLR-GRD---KPE----   69 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccc--hh-hhhhh-ccc---ccc----
Confidence            467899999999999999999999999999864 8999999999987654311100  00 00000 000   000    


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                           ..+.+|.++++++.+++++.+|+++|.+++.+.+||+++   .|   +++|++|.+|+++
T Consensus        70 -----~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~  123 (124)
T cd04600          70 -----TVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIA  123 (124)
T ss_pred             -----cHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhc
Confidence                 001135678899999999999999999999999999962   45   7999999999974

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.21  E-value=1.2e-10  Score=95.99  Aligned_cols=107  Identities=21%  Similarity=0.374  Sum_probs=85.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.++++.|.+++...+||++.   .|   +++|+++.++++...     .       ...++.+++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~v~~~~---   60 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKPVSEVM---   60 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCCHHHhc---
Confidence            45678999999999999999999999999963   35   799999999985321     0       112333332   


Q ss_pred             cccccCCCCCCCceEecC-CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~-d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                               .++...+.+ ++++.+|+++|.+.+.+.+||+|++|+++|+|+++|+++
T Consensus        61 ---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 ---------TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ---------ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                     234455666 999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=3.1e-10  Score=92.82  Aligned_cols=111  Identities=24%  Similarity=0.451  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ++.++.+++++.++++.|.+++.+.+||++.   .+   +++|+++.+++++.+........       ..+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~------   62 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------VTVGD------   62 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------ccHHH------
Confidence            4567899999999999999999999999963   34   79999999999987764321100       00111      


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                            .+..+..++.+++++.+|++.|.+.+.+.+||+|++|+++|++++.|++.
T Consensus        63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          63 ------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             ------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence                  12347788999999999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.21  E-value=1.9e-10  Score=94.64  Aligned_cols=100  Identities=15%  Similarity=0.282  Sum_probs=83.3

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccc
Q 013832          275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP  354 (435)
Q Consensus       275 v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~  354 (435)
                      +++.++.++.+|++.|.+.+.+.+||++   + +   +++|+++..++++...              .++.++       
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~~~-------   55 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVVDY-------   55 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchhhh-------
Confidence            4688999999999999999999999996   2 5   7999999999975210              122222       


Q ss_pred             ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          355 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       355 ~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                           +.++..++.+++++.+|++.|.+++.+.+||+| +|+++|++|++||+.
T Consensus        56 -----~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          56 -----IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -----hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence                 223577899999999999999999999999998 589999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.21  E-value=2.2e-10  Score=93.76  Aligned_cols=102  Identities=20%  Similarity=0.382  Sum_probs=84.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.+++++.++++.|.+++.+.+||++    ++   +++|+++..++++...             ..++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~~-------------~~~~~~~-----   56 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAHP-------------NRLVADA-----   56 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhcccc-------------cCCHHHH-----
Confidence            467789999999999999999999999995    24   7999999999975210             1223332     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                             +.+++.++++++++.+|+++|.+++.+.+||+|+ |+++|+||+.||+
T Consensus        57 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          57 -------MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             -------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence                   2347889999999999999999999999999997 9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2.7e-10  Score=96.03  Aligned_cols=120  Identities=19%  Similarity=0.334  Sum_probs=89.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|++.|.++++..+||+|.+ ++++|+++..|+...+.........-..+......+   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v---~~------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPV---AE------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCH---HH------
Confidence            56789999999999999999999999999864 799999999998875532211100000000001111   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              ++..+++++.+++++.++++.|.+++.+.+||+++   .+   +++|++|..|+++
T Consensus        72 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~  121 (122)
T cd04803          72 --------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLR  121 (122)
T ss_pred             --------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhc
Confidence                    24567889999999999999999999999999963   35   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.20  E-value=3.1e-10  Score=94.50  Aligned_cols=110  Identities=15%  Similarity=0.284  Sum_probs=87.3

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +.++++.+.++.+|.+.|.++++..+||.|++ ++++|++|..|+...+......         . -.+   .+.     
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~~---------~-~~v---~~~-----   63 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLSL---------D-DPV---SEV-----   63 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCCc---------C-CCH---HHh-----
Confidence            45788999999999999999999999999864 7999999999987644311100         0 011   121     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..++.++.+++++.+|++.|.+++.+.+||++.   +|   +++|+||.+||+.
T Consensus        64 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  112 (113)
T cd04607          64 ---------MNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS  112 (113)
T ss_pred             ---------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence                     4466788999999999999999999999999962   35   7999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.20  E-value=2.5e-10  Score=93.80  Aligned_cols=105  Identities=22%  Similarity=0.424  Sum_probs=87.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.++.++.+|++.|.+.+.+.+||++   + +   +++|+++..++++.   .          ...++.++    
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~---~----------~~~~~~~~----   57 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK---D----------PDETVEEI----   57 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc---C----------ccccHHHh----
Confidence            4677899999999999999988888999996   2 5   79999999999741   0          01233333    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                              +..+..++.+++++.+|+++|.+++.+.+||+|++|+++|+++..||+.
T Consensus        58 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          58 --------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             --------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                    2346788999999999999999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4.4e-10  Score=95.82  Aligned_cols=125  Identities=22%  Similarity=0.378  Sum_probs=89.7

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhc-cCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG-NHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~-~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      +++.+.++.++.+|+++|.+.++..+||+|++ ++++|++|..|+...+.... .+.............-....+     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD-----   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH-----
Confidence            45688999999999999999999999999975 79999999999987553211 100000000000000000111     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               +|.++++++.+++++.+|+..|.+++.+.+||++.+ +++   +++|+||.+||++
T Consensus        76 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~  127 (128)
T cd04632          76 ---------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLR  127 (128)
T ss_pred             ---------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhc
Confidence                     256788999999999999999999999999998521 235   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.19  E-value=3.3e-10  Score=117.92  Aligned_cols=121  Identities=15%  Similarity=0.220  Sum_probs=97.9

Q ss_pred             cccCCCccCCCCceEeCCCCCHHHHHHHHHh-----cCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC
Q 013832          262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILH-----NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS  336 (435)
Q Consensus       262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~-----~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~  336 (435)
                      +.+..|.+|+.+++++.++.++.+|++.|.+     ++...++|+|+   .+   +++|+++.+|++..      . +  
T Consensus       129 ~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~-~--  193 (449)
T TIGR00400       129 SDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K-P--  193 (449)
T ss_pred             CcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C-C--
Confidence            3344566789999999999999999999985     45678899863   34   79999999998631      0 1  


Q ss_pred             ccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          337 LPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       337 ~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                          ..+++++            |.++++++++++++.+|++.|.++++..+||||++|+++|+||..|+++.+..+
T Consensus       194 ----~~~v~~i------------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       194 ----EEILSSI------------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             ----CCcHHHH------------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence                1234333            345788899999999999999999999999999999999999999999877654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.19  E-value=3.2e-10  Score=93.72  Aligned_cols=108  Identities=21%  Similarity=0.430  Sum_probs=88.2

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .+++++.++.++.+|.+.|.+++...+||.|.+ ++++|++|..|++..+....   .          .+   .+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~---~----------~~---~~-----   59 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK---K----------SV---ED-----   59 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc---c----------CH---HH-----
Confidence            467789999999999999999999999999864 89999999999876443110   0          01   11     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               .|.+++.++.+++++.+|++.|.+++.+.+||++.   +|   +++|++|..+|++
T Consensus        60 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~  109 (110)
T cd04605          60 ---------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK  109 (110)
T ss_pred             ---------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence                     14567889999999999999999999999999963   45   7999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.18  E-value=1.2e-09  Score=113.75  Aligned_cols=183  Identities=16%  Similarity=0.196  Sum_probs=129.5

Q ss_pred             HHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChh
Q 013832          163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE  242 (435)
Q Consensus       163 i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e  242 (435)
                      ..+.++..++.++|-  .+++++.++.|+.+|.++|.++++..+||+|+ +++++|+||..|+...     .   .    
T Consensus        82 q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~---~----  146 (479)
T PRK07807         82 VAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D---R----  146 (479)
T ss_pred             HHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c---c----
Confidence            344455666777773  46789999999999999999999999999995 4799999999997310     0   0    


Q ss_pred             hhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH
Q 013832          243 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI  322 (435)
Q Consensus       243 ~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI  322 (435)
                        . ..+   .+              +|+.+++++.+++++.+|+++|.+++++.+||+|.   ++   +++|+||.+||
T Consensus       147 --~-~~V---~d--------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~DI  200 (479)
T PRK07807        147 --F-TQV---RD--------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTGA  200 (479)
T ss_pred             --C-CCH---HH--------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHHH
Confidence              0 011   22              26788999999999999999999999999999963   45   79999999999


Q ss_pred             HHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEE
Q 013832          323 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIY  401 (435)
Q Consensus       323 l~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGii  401 (435)
                      ++........    +   ..  +.+.++            .++.+.  ....+.++.|.+++++.| ++|- +|.   -.
T Consensus       201 l~~~~~~~~~----~---~~--g~l~V~------------aav~~~--~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~~  253 (479)
T PRK07807        201 LRATIYTPAV----D---AA--GRLRVA------------AAVGIN--GDVAAKARALLEAGVDVL-VVDTAHGH---QE  253 (479)
T ss_pred             HHHhhCCchh----h---hh--hccchH------------hhhccC--hhHHHHHHHHHHhCCCEE-EEeccCCc---cH
Confidence            9875532100    0   00  011111            122232  336788888999999996 6674 454   33


Q ss_pred             eHHHHHHHHhhc
Q 013832          402 CRSDITALAKDK  413 (435)
Q Consensus       402 s~~DI~~~~~~~  413 (435)
                      ..-+.++.++++
T Consensus       254 ~~~~~i~~ik~~  265 (479)
T PRK07807        254 KMLEALRAVRAL  265 (479)
T ss_pred             HHHHHHHHHHHH
Confidence            444566666654

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.18  E-value=2.2e-10  Score=114.11  Aligned_cols=123  Identities=16%  Similarity=0.285  Sum_probs=97.3

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.++|.....+++++++.|+.+|.+.|.+++...+||+|+ +++++|++|..|+...+....    ..     . -.
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~~----~~-----~-~~  264 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGGG----AL-----T-TP  264 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCCC----Cc-----C-Cc
Confidence            4567777765434889999999999999999999999999996 489999999999876543110    00     0 01


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      +   .+              +|.++++++.+++++.+|++.|.++++..+||++.   ++   +++|+||.+||++.
T Consensus       265 v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~  318 (321)
T PRK11543        265 V---NE--------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA  318 (321)
T ss_pred             H---HH--------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence            1   12              26678889999999999999999999999999963   35   79999999999853

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.17  E-value=2e-10  Score=123.19  Aligned_cols=118  Identities=16%  Similarity=0.273  Sum_probs=95.7

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.+++.++++++++.++.+.|.+++.+.+||+|+   ++   +++|++|.+|+.+.+.....       ....++.++ 
T Consensus       452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~di-  517 (574)
T PRK01862        452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKTAADY-  517 (574)
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccchHHHh-
Confidence            36778889999999999999999999999999963   45   79999999999875532210       001233333 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK  411 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~--g~lvGiis~~DI~~~~~  411 (435)
                                 +.+++.++++++++.+|+++|.+++++.+||||++  ++++|+||++|+++...
T Consensus       518 -----------m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        518 -----------AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             -----------ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                       34578899999999999999999999999999976  48999999999998654

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.17  E-value=1.8e-10  Score=98.40  Aligned_cols=113  Identities=16%  Similarity=0.241  Sum_probs=87.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+....... .        .++   .+      
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~-~--------~~v---~~------   63 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQP-S--------DPV---SK------   63 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCC-C--------CcH---HH------
Confidence            56789999999999999999999999999964 78999999999987654321110 0        011   22      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHH---------HhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKI---------LHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m---------~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                              +|.+++.++.+++++.+++++|         .+.+.+++||++   ++|   +++||+|.+||++++
T Consensus        64 --------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~Givt~~Dl~~~~  124 (124)
T cd04608          64 --------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE---KQE---KPIGIVTKIDLLSYI  124 (124)
T ss_pred             --------HhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc---ccc---ceEEEEehhHhhhhC
Confidence                    2667889999999999999964         344678888885   335   799999999998763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.17  E-value=6.6e-10  Score=92.00  Aligned_cols=109  Identities=21%  Similarity=0.380  Sum_probs=87.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      .++++..+.++.+|.+.|.++++..+||.|.+.++++|++|..|+...+.....   .        ..+   ...     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~---~--------~~~---~~~-----   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE---D--------LDL---RDL-----   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC---c--------CCH---HHH-----
Confidence            578899999999999999999999999998643799999999999875532110   0        011   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               + +++.++.+++++.+|++.|.+++.+.+||++.   .|   +++|++|.+|+++
T Consensus        63 ---------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  110 (111)
T cd04590          63 ---------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE  110 (111)
T ss_pred             ---------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence                     2 46788999999999999999999999999963   35   7999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.17  E-value=8.5e-10  Score=91.41  Aligned_cols=110  Identities=15%  Similarity=0.255  Sum_probs=87.3

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|.+.|.+++...+||.|+  ++++|+++..|+...+......  +       .-.+   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~--~-------~~~i---~~------   61 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP--S-------STPV---GE------   61 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC--C-------CCCH---HH------
Confidence            4568899999999999999999999999996  6899999999987654311000  0       0011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                              +|.+++..+.+++++.++++.|.+++.+.+||++    ++   +++|++|..++++|
T Consensus        62 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~G~it~~dl~~~  111 (111)
T cd04589          62 --------IATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GG---EVVGVLEQTDLLSF  111 (111)
T ss_pred             --------HhCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CC---EEEEEEEhHHhhcC
Confidence                    1456788999999999999999999999999995    25   79999999999764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.7e-10  Score=94.39  Aligned_cols=121  Identities=25%  Similarity=0.419  Sum_probs=89.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh--hhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE--EELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~--e~l~~~~i~~~~e~~~~  258 (435)
                      ++++++++.++.+|.+.|.+++...+||+|.+.++++|+++..|+...+............  .+.....   +.+    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEP---VRS----   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcC---HHH----
Confidence            4678899999999999999999999999997448999999999998755321100000000  0000001   111    


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                ++..+++++.+++++.++++.|.+.+.+.+||++.   +|   +++|+||.+||++
T Consensus        75 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~  124 (125)
T cd04631          75 ----------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLK  124 (125)
T ss_pred             ----------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhc
Confidence                      24567889999999999999999999999999962   35   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.17  E-value=2.8e-10  Score=94.27  Aligned_cols=102  Identities=16%  Similarity=0.308  Sum_probs=82.6

Q ss_pred             eCCCCCHHHHHHHHHhcC-----CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          277 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       277 v~~~~sL~da~~~m~~~~-----v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      +.+++++.++++.|.+++     +..+||+++   ++   +++|+++.+++++.      .       ...++.++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------~-------~~~~v~~~----   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------D-------PDTPVSDI----   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------C-------CcchHHHH----
Confidence            578999999999998877     478999963   35   79999999998641      0       01223332    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                              +..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.||++.
T Consensus        59 --------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          59 --------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             --------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                    23468899999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.3e-10  Score=93.19  Aligned_cols=114  Identities=21%  Similarity=0.392  Sum_probs=85.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|+...+.....    .....+..-++   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~v---~~------   67 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN----LDLERLVDLKV---ID------   67 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc----hhHHHHhCCcH---HH------
Confidence            5788999999999999999999999999996 4799999999999765532110    00000000011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|.+++.++.+++++.+|+..|.+.+  .+||+++   ++   +++|++|.+|+++
T Consensus        68 --------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~  115 (116)
T cd04643          68 --------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILK  115 (116)
T ss_pred             --------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhc
Confidence                    25667889999999999999998765  5999962   35   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.16  E-value=8.2e-10  Score=92.22  Aligned_cols=112  Identities=20%  Similarity=0.328  Sum_probs=88.1

Q ss_pred             eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832          182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR  261 (435)
Q Consensus       182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~  261 (435)
                      +.++++++++.+|.+.|.+.++..+||.|++ ++++|+++..|+...+......         ....+   .+       
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~---------~~~~~---~~-------   62 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAG---------EPSAV---DE-------   62 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhccccc---------ccccH---HH-------
Confidence            4578899999999999999999999999964 7999999999998755321100         00001   11       


Q ss_pred             cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                             +|..++.++.+++++.+|+++|.+++.+.+||++.. ..|   +++|+||.++|++
T Consensus        63 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~  114 (115)
T cd04593          63 -------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLL  114 (115)
T ss_pred             -------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhc
Confidence                   145678899999999999999999999999999732 125   7999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.16  E-value=1e-10  Score=121.61  Aligned_cols=181  Identities=15%  Similarity=0.237  Sum_probs=135.6

Q ss_pred             HHHHHHhhc--cCceecccCCCCCeEEeCCCccHHHHHHHHHH-----CCCceeeeeeCCCCeEEEeeehHHHHHHHHHh
Q 013832          160 RHRVSVFLS--THTAYELLPESGKVVALDIDLPVKQAFHILYE-----QGISMAPLWDFSKARFVGVLSASDFILILREL  232 (435)
Q Consensus       160 ~~~i~~~l~--~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~-----~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~  232 (435)
                      +..++.+++  ..++.++|.  ..+++++.+.|+.+|.+.|.+     +++..++|.|+ .++++|+++.+|++..    
T Consensus       119 r~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a----  191 (449)
T TIGR00400       119 RKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA----  191 (449)
T ss_pred             HHHHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC----
Confidence            334555543  578999995  578999999999999999986     56678898886 4799999999998631    


Q ss_pred             ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832          233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  312 (435)
Q Consensus       233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~  312 (435)
                        .. .        ..+   ++              +|.++++++.+++++.+|++.|.+++...+||+|   +.|   +
T Consensus       192 --~~-~--------~~v---~~--------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD---~~g---~  237 (449)
T TIGR00400       192 --KP-E--------EIL---SS--------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD---NEG---R  237 (449)
T ss_pred             --CC-C--------CcH---HH--------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc---CCC---e
Confidence              10 0        011   22              1567788999999999999999999999999996   345   7


Q ss_pred             EEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q 013832          313 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD  392 (435)
Q Consensus       313 lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD  392 (435)
                      ++|++|.+|+++.+.+...             ++++.            ...++..+++.+.+++..|.++++..++|. 
T Consensus       238 lvGiIt~~Dil~~l~~~~~-------------ed~~~------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-  291 (449)
T TIGR00400       238 LVGIVTVDDIIDVIQSEAT-------------EDFYM------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVL-  291 (449)
T ss_pred             EEEEEEHHHHHHHHHhhhH-------------HHHHH------------hcCCCCCcchhhhchHHHHHHhccchHHHH-
Confidence            9999999999998876422             11110            122233457788999999999999999885 


Q ss_pred             CCCcEEEEEeHHHHHHHHh
Q 013832          393 DNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       393 ~~g~lvGiis~~DI~~~~~  411 (435)
                         .+.|+++ ..++..+.
T Consensus       292 ---~~~~~~t-~~ii~~f~  306 (449)
T TIGR00400       292 ---LVSSTFT-ATIISNYE  306 (449)
T ss_pred             ---HHHHHHH-HHHHHHHH
Confidence               6778888 66666543

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.16  E-value=3.4e-10  Score=95.09  Aligned_cols=117  Identities=19%  Similarity=0.395  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC-c-cccccccccccCc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS-L-PILKLPICAIPVG  350 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~-~-~~~~~~v~~l~ig  350 (435)
                      ++.++.+++++.+|++.|.+.+..++||++.   ++   +++|+++..++++.....+...... . .....++.++   
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~---   72 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI---   72 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH---
Confidence            4678899999999999999999999999963   35   7999999999987654321110000 0 0001222222   


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                               +.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+++..||++
T Consensus        73 ---------~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          73 ---------MTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             ---------hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence                     2357789999999999999999999999999987 99999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=6.3e-10  Score=92.10  Aligned_cols=109  Identities=21%  Similarity=0.322  Sum_probs=87.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +.++++++.++.+|.+.|.+.+...+||+|. .++++|+++..|+...+......           -.+   .+.     
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-----------~~v---~~~-----   61 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGPD-----------APV---RGV-----   61 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCCC-----------CcH---HHH-----
Confidence            4567899999999999999999999999996 47999999999998755421110           011   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..++.++.+++++.+|++.|.+++...+||++.   .+   +++|++|.+|+.+
T Consensus        62 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~  110 (111)
T cd04639          62 ---------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE  110 (111)
T ss_pred             ---------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence                     4567889999999999999999999999999962   35   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.16  E-value=3.8e-10  Score=94.13  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      ++.+++++.++.+|.+.|.+++ ...+||+|. +++++|+++..|++........           ..+   +.+.+.  
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~---v~~~~~--   64 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-----------QTT---VIQVMT--   64 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-----------ccc---hhhhhc--
Confidence            4568899999999999998775 899999996 4799999999998765431110           001   122211  


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                ...++.++.+++++.+|++.|.+++.+.+||+++   ++   +++|++|.+||++
T Consensus        65 ----------~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~  113 (114)
T cd04801          65 ----------PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR  113 (114)
T ss_pred             ----------ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence                      0123568999999999999999999999999963   35   7999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=5.4e-10  Score=97.74  Aligned_cols=126  Identities=27%  Similarity=0.480  Sum_probs=93.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc----cCCCcccccccccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH----CSSSLPILKLPICAIP  348 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~----~~~~~~~~~~~v~~l~  348 (435)
                      +++++.+++++.+|++.|.+.+++.+||++   + +   +++|+++..++++++......    .+.....+..++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            467899999999999999999999999996   2 5   799999999999877543210    000011112222221 


Q ss_pred             Cccc-----------ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          349 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       349 igt~-----------~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                       ..|           ...+.+.+.+++.++.+++++.+|++.|.+++.+.+||+++ |+++|++++.|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             011           00123445568899999999999999999999999999997 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=8e-10  Score=92.95  Aligned_cols=118  Identities=24%  Similarity=0.455  Sum_probs=88.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCC-ChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL-TEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l-~~e~l~~~~i~~~~e~~~~~  259 (435)
                      ++++++++.++.+|.+.|.++++..+||+|.  ++++|++|..|+...+.......... ....+....+.         
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------   70 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVS---------   70 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHH---------
Confidence            4678999999999999999999999999995  89999999999987554221100000 00000111111         


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              ..|..++.++.+++++.+|+.+|.+.+.+.+||++   + +   +++|++|.+|+++
T Consensus        71 --------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~  120 (121)
T cd04633          71 --------DIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILR  120 (121)
T ss_pred             --------HHccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhc
Confidence                    12556788999999999999999999999999996   2 5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.15  E-value=2.8e-10  Score=116.44  Aligned_cols=123  Identities=20%  Similarity=0.294  Sum_probs=99.7

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.+++  ..+.+++++.+|+.+|...|.++|+.++.++|. .+...||+|.+|+...+..-+..   .+      .   
T Consensus       150 rv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~~------~---  214 (610)
T COG2905         150 RVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---KT------Q---  214 (610)
T ss_pred             HHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---cc------c---
Confidence            344455  346789999999999999999999999988885 47899999999998866543321   10      0   


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                      ...              .+|+.|++++.+.+-+.||+.+|.+++++++||..    +|   +++||||..||++....+
T Consensus       215 ~V~--------------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~g---q~~Gilt~~dIl~l~s~~  272 (610)
T COG2905         215 KVS--------------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DG---QPLGILTLTDILRLFSQN  272 (610)
T ss_pred             chh--------------hhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CC---eeeEEeeHHHHHHhhCCC
Confidence            111              13899999999999999999999999999999993    57   899999999999876643

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.15  E-value=5.4e-10  Score=92.47  Aligned_cols=102  Identities=16%  Similarity=0.220  Sum_probs=84.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ....+.+++++.++...|.+.+...+||+++...+|   +++|+++..++.+....                  +     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------~-----   56 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------Y-----   56 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------h-----
Confidence            456789999999999999999999999996310035   79999999999765432                  1     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             |.+++.++++++++.+++++|.+++.+.+||++ +|+++|++|+.||++
T Consensus        57 -------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          57 -------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             -------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                   113677899999999999999999999999995 789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=1.4e-09  Score=91.78  Aligned_cols=121  Identities=17%  Similarity=0.365  Sum_probs=90.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|.+.|.++++..+||+|.  ++++|+++..|+...+....... .   +...  ....+......  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~---~~~~--~~~~~~~~~~~--   71 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-G---ETEK--DLATLNRRAHQ--   71 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-c---chHH--HHHHHHhHHHH--
Confidence            5678999999999999999999999999995  79999999999987654322110 0   0000  00001111111  


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                              +|..+++++.+++++.++++.|.+++...+||++.   .+   +++|++|..+++++
T Consensus        72 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~  122 (122)
T cd04637          72 --------IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY  122 (122)
T ss_pred             --------hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence                    25577899999999999999999999999999963   35   79999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.15  E-value=4.2e-10  Score=115.62  Aligned_cols=120  Identities=10%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|++  ++++++.++++.++++.|.+++.+|+||.+++  .+   +++|+++.+|++.++..   .        ..++.+
T Consensus       196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d---~ivGiv~~kDll~~~~~---~--------~~~l~~  259 (408)
T TIGR03520       196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--ID---NITGVLYIKDLLPHLNK---K--------NFDWQS  259 (408)
T ss_pred             eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CC---ceEEEEEHHHHHhHhcc---C--------CCCHHH
Confidence            4654  78999999999999999999999999999632  23   69999999999865421   0        011222


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH  417 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~  417 (435)
                      +     +        +++.++++++++.++++.|.+++.+..+|||+.|.++|+||..||+..+-...+.+
T Consensus       260 ~-----~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de  317 (408)
T TIGR03520       260 L-----L--------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE  317 (408)
T ss_pred             H-----c--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence            2     1        36789999999999999999999999999999999999999999999886655543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.15  E-value=4.6e-10  Score=92.15  Aligned_cols=104  Identities=13%  Similarity=0.217  Sum_probs=84.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|++.|.+++...+||.|+ .|+++|++|..|+.....      .          .+   .+      
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~------~----------~~---~~------   55 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG------G----------CC---GD------   55 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc------c----------ch---hh------
Confidence            4568899999999999999999999999986 489999999999875210      0          01   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|.+....+.+++++.+|++.|.++++..+||++.   .+   +++|++|.+++++
T Consensus        56 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~  105 (106)
T cd04582          56 --------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD  105 (106)
T ss_pred             --------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                    14456678999999999999999999999999963   35   7999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=7.4e-10  Score=95.15  Aligned_cols=131  Identities=19%  Similarity=0.264  Sum_probs=90.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      .++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|+...+................... ......   ..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~   76 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD-ESKIKK---LL   76 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccc-hHHHHH---Hc
Confidence            35688999999999999999999999999964 79999999999987664321110000000000000 000000   00


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..  ..+.+|.+++..+.+++++.+|++.|.+.+.+.+||++   + |   +++|++|..|++++
T Consensus        77 ~~--~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~  132 (132)
T cd04636          77 GK--KVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS  132 (132)
T ss_pred             CC--CHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence            00  00113567788999999999999999999999999996   2 5   79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.13  E-value=6.5e-10  Score=93.23  Aligned_cols=113  Identities=12%  Similarity=0.208  Sum_probs=86.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhcC-CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          273 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~-v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++.++.+++++.+|++.|.+.+ .+.+||++   + |   +++|+++..++++++...+...    .....++.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~~v~~-----   65 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKKPVSE-----   65 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCCcHHH-----
Confidence            4567899999999999998887 89999996   2 5   7999999999987655321000    000122332     


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~---~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             .|.++..++.+++++.+|+++|.+++..   .+|||+++|+++|+||+.|+++
T Consensus        66 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          66 -------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             -------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence                   2345788999999999999999998864   4478988999999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.13  E-value=2e-09  Score=89.03  Aligned_cols=109  Identities=18%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|.+.|.++++..+||.|+  ++++|+++..|+...+...  .   .    ....++   .+.     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~--~---~----~~~~~i---~~~-----   62 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAE--G---L----DPDTPV---SEV-----   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhcc--C---C----CccCCH---HHH-----
Confidence            5678899999999999999999999999996  7999999999987543211  0   0    000112   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..+++.+.+++++.++++.|.+.+.+.+||++   + |   +++|++|.+||++
T Consensus        63 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~  110 (111)
T cd04800          63 ---------MTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR  110 (111)
T ss_pred             ---------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence                     456788999999999999999999999999996   2 5   7999999999974

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.13  E-value=1.2e-09  Score=91.59  Aligned_cols=120  Identities=19%  Similarity=0.357  Sum_probs=88.7

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|++.|.++++..+||+|.  ++++|+++..|+..........   ....+.... ...  ....   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~~-~~~--~~~~---   70 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYYL-LSK--IKVS---   70 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhhh-hcc--cCHH---
Confidence            4678999999999999999999999999996  7999999999997654321100   000000000 000  0000   


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                             .+|.++++++.+++++.+++..|.+.+.+.+||++.   .|   +++|++|..||++
T Consensus        71 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvvt~~di~~  121 (122)
T cd04585          71 -------DIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QG---RLVGIITESDLFR  121 (122)
T ss_pred             -------HhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CC---cEEEEEEHHHhhh
Confidence                   125678899999999999999999999999999962   35   7999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.4e-09  Score=90.29  Aligned_cols=110  Identities=21%  Similarity=0.400  Sum_probs=86.9

Q ss_pred             eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832          182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR  261 (435)
Q Consensus       182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~  261 (435)
                      ..++.++.++.+|++.|.+.++..+||+|. .++++|++|..|+...+....         .+....+   .+       
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~i---~~-------   62 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAKV---RE-------   62 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCcH---HH-------
Confidence            567899999999999999999999999996 479999999999876432110         0011111   11       


Q ss_pred             cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                             +|..++.++.+++++.++++.|.+++.+.+||++   +.|   +++|++|..++++
T Consensus        63 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~g---~~~Gvvt~~dl~~  112 (113)
T cd04615          63 -------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLD---DKG---KVGGIVTEDDILR  112 (113)
T ss_pred             -------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEEHHHhhc
Confidence                   1456788999999999999999999999999996   245   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.12  E-value=2.1e-09  Score=88.92  Aligned_cols=108  Identities=22%  Similarity=0.397  Sum_probs=87.3

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++++.+.++.+|.+.|.+++...+||.|.  ++++|+++..|+...+.... .          ...+   .+.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~----------~~~~---~~~----   61 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G----------HAPV---KDY----   61 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c----------cCcH---HHH----
Confidence            35778999999999999999999999999996  79999999999876442110 0          0011   111    


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                |.++++++.+++++.+|+..|.+++.+.+||++    +|   +++|++|..|+++
T Consensus        62 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~  109 (110)
T cd04595          62 ----------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR  109 (110)
T ss_pred             ----------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence                      456788999999999999999999999999995    35   7999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.12  E-value=2.8e-10  Score=90.98  Aligned_cols=74  Identities=22%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEE-EcCCceEEEEEEECCeeecCCCCCeeeCCCCCeeeE
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW-SIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV  104 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nnv  104 (435)
                      ++|+ |...|++|.|.|+|++|.. .+|++.  .+|.|++++ .|.+|.|+|+|+|||.|..||..+...-..+...|.
T Consensus         8 v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           8 VTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             EEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            5665 4556999999999998876 699885  479999998 488899999999999999999998655444444443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.3e-09  Score=90.33  Aligned_cols=109  Identities=13%  Similarity=0.269  Sum_probs=86.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+.......  .        .....+   .+.     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~--~--------~~~~~v---~~~-----   62 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFE--S--------FLEKKV---FNI-----   62 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhc--c--------cccCcH---HHH-----
Confidence            46788999999999999999999999999864 7999999999987543210  0        000011   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |.+++.++.+++++.+|+..|.+++.+.+||++   + +   +++|+||..||+.
T Consensus        63 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~  110 (111)
T cd04626          63 ---------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD  110 (111)
T ss_pred             ---------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence                     456788999999999999999999999999996   2 5   7999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.1e-09  Score=91.05  Aligned_cols=112  Identities=25%  Similarity=0.406  Sum_probs=87.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|.+.|.++++..+||+|.+ ++++|+++..|++..+........       ....+   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~-------~~~~v---~~------   64 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCD-------GVATV---RD------   64 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccC-------CCccH---HH------
Confidence            46788999999999999999999999999964 799999999998865532110000       00011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..++.++.+++++.+|++.|.+++.+.+||++   + |   +++|++|.++|++
T Consensus        65 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~  113 (114)
T cd04629          65 --------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLR  113 (114)
T ss_pred             --------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhc
Confidence                    1445778899999999999999999999999996   2 5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.3e-09  Score=94.57  Aligned_cols=124  Identities=13%  Similarity=0.282  Sum_probs=88.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChh--hhhh-----cc--HHH
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE--ELET-----HT--ISA  251 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e--~l~~-----~~--i~~  251 (435)
                      ++.++..+.++.+|++.|.+++...+||+|+ .++++|++|..|++..+......  .....  .+..     ..  ...
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   78 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKSIKMKRKAGQKRYRYVKE   78 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhhhhhhhhccccccccccc
Confidence            3567899999999999999999999999996 48999999999998755321100  00000  0000     00  000


Q ss_pred             HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      .....          ..+|..++..+.+++++.+|++.|.+++.+.+||++   + |   +++|+||.++|++
T Consensus        79 ~~~~v----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVA----------EDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR  134 (135)
T ss_pred             ccccH----------HHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence            00000          012567788999999999999999999999999996   2 5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.11  E-value=5.9e-10  Score=108.04  Aligned_cols=108  Identities=17%  Similarity=0.236  Sum_probs=88.8

Q ss_pred             cCCCC-ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccc
Q 013832          269 AFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  347 (435)
Q Consensus       269 ~~~~~-~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  347 (435)
                      +|.++ +.++.+++++.+|++.|.+.+++.+||+++   +|   +++|+++..|+++.+....        ....++.++
T Consensus       160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~~i  225 (268)
T TIGR00393       160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVRDF  225 (268)
T ss_pred             HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHHHh
Confidence            46667 889999999999999999999999999963   35   7999999999987643210        012344444


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC  402 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis  402 (435)
                                  |.++++++.+++++.+|+++|.+++++.+||||++|+++|+|+
T Consensus       226 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       226 ------------MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                        3457889999999999999999999999999999899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.11  E-value=1.3e-09  Score=114.37  Aligned_cols=167  Identities=18%  Similarity=0.255  Sum_probs=119.3

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++++++.++.+|.++|.++++..+||+|+ .++++|++|..|+....    ..  .        ..+   .+.    
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~--~--------~~V---~di----  152 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DL--S--------QPV---SEV----  152 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cC--C--------CcH---HHH----
Confidence            57889999999999999999999999999996 58999999999984310    00  0        011   221    


Q ss_pred             cccccCCCccCC-CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcc
Q 013832          260 NRQIDSHGKAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP  338 (435)
Q Consensus       260 ~~~~~~~g~~~~-~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~  338 (435)
                                |. ++++++.+++++.+|++.|.+++++.+||++.   .+   +++|++|.+||++.+...  ...    
T Consensus       153 ----------m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~~~~p--~a~----  210 (486)
T PRK05567        153 ----------MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKAEEFP--NAC----  210 (486)
T ss_pred             ----------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhhhhCC--Ccc----
Confidence                      44 68899999999999999999999999999963   45   799999999999875311  000    


Q ss_pred             ccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHH
Q 013832          339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDIT  407 (435)
Q Consensus       339 ~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGiis~~DI~  407 (435)
                        ...-+.+.++.            .+...++  -.++++.|.+++++.+ |+|. +|+..++++.-+.+
T Consensus       211 --~d~~g~l~V~a------------ai~~~~~--~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i  263 (486)
T PRK05567        211 --KDEQGRLRVGA------------AVGVGAD--NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREI  263 (486)
T ss_pred             --cccCCCEEEEe------------ecccCcc--hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHH
Confidence              00111222221            2223332  2788899999999966 6664 67877766554433

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.11  E-value=7.9e-10  Score=118.68  Aligned_cols=132  Identities=16%  Similarity=0.177  Sum_probs=102.8

Q ss_pred             HHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhh
Q 013832          164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE  243 (435)
Q Consensus       164 ~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~  243 (435)
                      .+.+...++.|+|.+  ++.++++++++.+|.+.|.+++...+||+|+ +++++|++|..|+.+.+.....         
T Consensus       441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~---------  508 (574)
T PRK01862        441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD---------  508 (574)
T ss_pred             hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc---------
Confidence            455667788888744  5668999999999999999999999999996 4799999999998764431100         


Q ss_pred             hhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       244 l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                      ....   ..++              .|.+++.++.+++++.+|+++|.+++.+.+||+|++ +.+   +++|+||++|++
T Consensus       509 ~~~~---~v~d--------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~DIl  567 (574)
T PRK01862        509 TTDK---TAAD--------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKTSLL  567 (574)
T ss_pred             cccc---hHHH--------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHHHHH
Confidence            0000   1122              256778899999999999999999999999999742 224   799999999999


Q ss_pred             HHHHh
Q 013832          324 KCVCR  328 (435)
Q Consensus       324 ~~l~~  328 (435)
                      +.+.+
T Consensus       568 ~~l~~  572 (574)
T PRK01862        568 DAYRR  572 (574)
T ss_pred             HHHHh
Confidence            88754

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.11  E-value=3.5e-09  Score=110.21  Aligned_cols=119  Identities=18%  Similarity=0.261  Sum_probs=95.4

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      ++..+.+++|-  .+++++.++.++.+|.++|.++++..+||+|.  ++++|+||..|+..    . ..         . 
T Consensus        85 v~~VKv~eim~--~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~----~-~~---------~-  145 (475)
T TIGR01303        85 VAFVKSRDLVL--DTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLG----V-DR---------F-  145 (475)
T ss_pred             Hhhcchhhccc--cCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhc----C-CC---------C-
Confidence            44556667763  36789999999999999999999999999984  68999999999731    0 00         0 


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      -.+   .+              +|+.+++++.+++++.+|+++|.+++++.+||++.   ++   +++|+||.+||++..
T Consensus       146 ~~V---~d--------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQV---RD--------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTGALRAT  202 (475)
T ss_pred             CCH---HH--------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHH
Confidence            011   22              26788999999999999999999999999999962   45   799999999999865


Q ss_pred             H
Q 013832          327 C  327 (435)
Q Consensus       327 ~  327 (435)
                      .
T Consensus       203 ~  203 (475)
T TIGR01303       203 I  203 (475)
T ss_pred             h
Confidence            4

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.11  E-value=7.2e-10  Score=95.59  Aligned_cols=131  Identities=21%  Similarity=0.305  Sum_probs=89.9

Q ss_pred             CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc--HHHH-HHH
Q 013832          179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT--ISAW-KEG  255 (435)
Q Consensus       179 s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~--i~~~-~e~  255 (435)
                      |..+.+++++.++.+|.+.|.+++...+||+|+ .++++|+++..|+...+......  .  ..+.....  .+.. ...
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTER--R--RARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcc--h--hhhHHHHhcchHHHHHHH
Confidence            346788999999999999999999999999996 47999999999998644321100  0  00000000  0000 000


Q ss_pred             HHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       256 ~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      . ....  .....+|..++.++.+++++.+|+..|.+.+.+++||++    .|   +++|++|..|+++
T Consensus        76 ~-~~~~--~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~  134 (135)
T cd04586          76 V-RSHG--RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLR  134 (135)
T ss_pred             H-HhcC--CCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhc
Confidence            0 0000  000012556788999999999999999999999999995    35   7999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.11  E-value=1.3e-09  Score=90.29  Aligned_cols=112  Identities=25%  Similarity=0.406  Sum_probs=88.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++++.++.+|.+.|.++++..+||+|.+ ++++|+++..|+...+....         ..+..++   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~---------~~~~~~v---~~------   62 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS---------LYDLVVA---SD------   62 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc---------ccccEEH---HH------
Confidence            45689999999999999999999999999964 78999999999876442110         0011112   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|.+++.++.+++++.++++.|.+.+.+.+||++.+  .+   +++|++|..|+++
T Consensus        63 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~  113 (114)
T cd04613          63 --------IMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLS  113 (114)
T ss_pred             --------hccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhc
Confidence                    155778899999999999999999999999999631  35   7999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.11  E-value=2.6e-09  Score=88.27  Aligned_cols=108  Identities=19%  Similarity=0.326  Sum_probs=86.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|.+.|.++++..+||.|.  ++++|+++..|++........    .          ..+.+.     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~~-----   60 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKDV-----   60 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHHH-----
Confidence            4678899999999999999999999999995  799999999998765432110    0          011111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               +..++.++.+++++.++++.|.+.+.+.+||++.   .|   +++|++|..|+++
T Consensus        61 ---------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  109 (110)
T cd04588          61 ---------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR  109 (110)
T ss_pred             ---------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence                     4467889999999999999999999999999962   35   7999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=1.1e-09  Score=93.27  Aligned_cols=116  Identities=17%  Similarity=0.262  Sum_probs=83.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHH--HHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL--RELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il--~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      +++++..++++.+|++.|.++++..+||.|.+ ++++|+++..|+....  .........     ....++   .+.   
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~-----~~~~~v---~~i---   69 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGIS-----RSELTV---ADV---   69 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCC-----chheEH---HHh---
Confidence            46789999999999999999999999999964 7999999999987521  111110000     000011   111   


Q ss_pred             hcccccCCCccCCCCceE--e----CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          259 LNRQIDSHGKAFPRPLVY--A----GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~--v----~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                 |.++...  +    .+++++.+|++.|.+++++.+||++++  .|   +++|+||.+||++
T Consensus        70 -----------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~--~~---~~~G~it~~di~~  125 (126)
T cd04640          70 -----------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE--HH---QIRGIISTSDIAR  125 (126)
T ss_pred             -----------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC--CC---EEEEEEeHHHHhh
Confidence                       4333322  2    368999999999999999999999741  25   7999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.09  E-value=2.2e-09  Score=88.56  Aligned_cols=109  Identities=24%  Similarity=0.464  Sum_probs=87.1

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++.++++.++.+|.+.|.++++..+||.|.  ++++|+++..|+........     .     ....+   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~-----~~~~~---~~------   60 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E-----ATVLV---GD------   60 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c-----cccCH---HH------
Confidence            4678999999999999999999999999996  79999999999875432110     0     00011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..++.++.+++++.++++.|.+++.+.+||++.   ++   +++|++|..||++
T Consensus        61 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~  110 (111)
T cd04612          61 --------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLR  110 (111)
T ss_pred             --------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhh
Confidence                    15577899999999999999999999999999963   35   7999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.09  E-value=2.1e-09  Score=89.64  Aligned_cols=110  Identities=18%  Similarity=0.354  Sum_probs=83.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      ++++++.+.++.+|.+.|.+++ ...+||.|.  ++++|+++..|+...+.....         ...-.+   .+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~---------~~~~~i---~~-----   62 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKD---------LSDLPI---GE-----   62 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCC---------ccccCH---HH-----
Confidence            4567899999999999999888 677777773  799999999999765432100         000011   11     


Q ss_pred             cccccCCCccCCCCceEeCCC--CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPN--DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~--~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               .|..+++++.++  +++.+|+++|.+++.+.+||++.   +|   +++|++|.+|+++
T Consensus        63 ---------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~  114 (115)
T cd04620          63 ---------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ  114 (115)
T ss_pred             ---------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence                     145677888877  78999999999999999999963   35   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.08  E-value=3.5e-09  Score=87.76  Aligned_cols=111  Identities=15%  Similarity=0.304  Sum_probs=86.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++++.++.++.+|++.|.+++...+||.|.  ++++|+++..|++..+......  .      ...++   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--~------~~~~v---~~------   62 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLD--P------ESTLV---ER------   62 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCC--c------CcCCH---HH------
Confidence            5678899999999999999999999999985  8999999999987433211100  0      00111   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|..++.++.+++++.+|++.|.+++.+.+||++.   ++   +++|++|..||+.
T Consensus        63 --------i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~  112 (113)
T cd04587          63 --------VMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH  112 (113)
T ss_pred             --------hcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence                    14567889999999999999999999999999963   35   7999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=3e-09  Score=88.15  Aligned_cols=110  Identities=19%  Similarity=0.395  Sum_probs=87.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|.+.|.+++...+||.|.+ ++++|+++..|++..+.....    .     . -.+   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----~-----~-~~v---~~------   61 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----L-----D-TPV---SE------   61 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----C-----c-cCH---HH------
Confidence            45678999999999999999999999999964 799999999998765432110    0     0 011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|..++.++.+++++.++++.|.+++...+||++.   .|   +++|++|.+++++
T Consensus        62 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~  111 (112)
T cd04624          62 --------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR  111 (112)
T ss_pred             --------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence                    14567889999999999999999999999999963   35   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.08  E-value=4.2e-09  Score=87.24  Aligned_cols=109  Identities=17%  Similarity=0.355  Sum_probs=84.2

Q ss_pred             eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832          182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR  261 (435)
Q Consensus       182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~  261 (435)
                      +.++.++.++.+|.+.|.+++...++|.+.  ++++|+++..|+...+......        ....++   .+.      
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~--------~~~~~v---~~~------   63 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAG--------VLDTTV---RAI------   63 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCc--------hhcCCH---HHH------
Confidence            567899999999999999888877776653  7999999999998755421100        000111   111      


Q ss_pred             cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              |..++.++.+++++.+|+++|.+++..++||++    .+   +++|++|.+||++
T Consensus        64 --------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~---~~~Gvvt~~dl~~  111 (112)
T cd04625          64 --------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GG---TLLGVISFHDVAK  111 (112)
T ss_pred             --------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CC---EEEEEEEHHHhhc
Confidence                    456678899999999999999999999999995    25   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.08  E-value=3.5e-09  Score=87.41  Aligned_cols=109  Identities=19%  Similarity=0.319  Sum_probs=87.1

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++++.++.+|++.|.+++...+||.|.  ++++|+++..|+.........          ....+   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v---~~------   60 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPV---GE------   60 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCH---HH------
Confidence            4678899999999999999999999999986  799999999998765532110          00111   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|.++++++.+++++.++++.|.+.+.+.+||++.   .|   +++|++|.++|++
T Consensus        61 --------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~  110 (111)
T cd04611          61 --------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ  110 (111)
T ss_pred             --------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence                    14567889999999999999999999999999963   35   7999999999974

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.8e-09  Score=90.96  Aligned_cols=119  Identities=17%  Similarity=0.350  Sum_probs=87.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh-hhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~-e~l~~~~i~~~~e~~~~~  259 (435)
                      +++++.++.++.+|++.|.+++...+||+|. .++++|+++..|++...... ........ ......   .+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~-~~~~~~~~~~~~~~~---~~~~-----   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVR-TSVEDQQRTQTKASP---TVEK-----   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcccc-ccccchhhhhhhccC---cHHH-----
Confidence            4678999999999999999999999999986 48999999999987532100 00000000 000000   0111     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               +|.++++.+.+++++.++++.|.+++.+.+||++.   .|   +++|++|..++++
T Consensus        72 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~  121 (122)
T cd04635          72 ---------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLK  121 (122)
T ss_pred             ---------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhc
Confidence                     24567889999999999999999999999999963   35   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.07  E-value=2.5e-09  Score=88.31  Aligned_cols=105  Identities=23%  Similarity=0.318  Sum_probs=85.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|...|.+++...+||+|. .++++|+++..|+....    .   .        ..+   .+.     
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~---~--------~~v---~~~-----   58 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----P---D--------TTI---EKV-----   58 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----c---c--------ccH---HHH-----
Confidence            4678999999999999999999999999996 58999999999985310    0   0        011   221     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..++.++.+++++.+|++.|.+++.+.+||++   ++|   +++|++|..++++
T Consensus        59 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~di~~  107 (108)
T cd04596          59 ---------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD---DNK---KLLGIISRQDVLK  107 (108)
T ss_pred             ---------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc---CCC---CEEEEEEHHHhhc
Confidence                     446788999999999999999999999999996   245   7999999999974

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.07  E-value=2.5e-09  Score=88.47  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=85.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      .+..++++.++.+|...|.+++...+||+|+.  .++++|+++..|+......                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            46788999999999999999999999999963  4899999999998653321                           


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      .          |.+++.++.+++++.++++.|.+++.+.+||++    +|   +++|++|.+|+++
T Consensus        56 ~----------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~  104 (105)
T cd04591          56 Y----------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLK  104 (105)
T ss_pred             h----------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhc
Confidence            1          556788999999999999999999999999994    35   7999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.07  E-value=2.1e-09  Score=89.15  Aligned_cols=111  Identities=16%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.++.++.++.+|.+.|.+.+...+||.|.+ ++++|+++..|+...+.....         ....++   .+      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~---------~~~~~v---~~------   63 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLD---------ILTLPV---AD------   63 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCc---------cccCCH---HH------
Confidence            34568899999999999999999999999964 799999999998875542111         000011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..+..++.+++++.+++++|.+++.+.+||++.   .+   +++|++|..||++
T Consensus        64 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~  113 (114)
T cd04604          64 --------VMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR  113 (114)
T ss_pred             --------hhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence                    14566788999999999999999999999999963   35   7999999999974

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=6.9e-09  Score=85.95  Aligned_cols=110  Identities=21%  Similarity=0.375  Sum_probs=86.3

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++++.++.++.+|++.|.+++...+||+|+  ++++|+++..|+...+.......        ...++   .+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~--------~~~~~---~~------   62 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKP--------REVPV---GE------   62 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCc--------ccCCH---HH------
Confidence            4678899999999999999999999999995  49999999999887543211000        00011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|..++.++.+++++.++++.|.+++.+.+||++.    +   +++|++|.+|+++
T Consensus        63 --------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~  111 (112)
T cd04802          63 --------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM  111 (112)
T ss_pred             --------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence                    14567888999999999999999999999999962    3   6999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.06  E-value=4e-09  Score=86.70  Aligned_cols=106  Identities=16%  Similarity=0.357  Sum_probs=85.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++++.++.+|...|.++++..+||.|.. ++++|+++..|+.....    ...          .+   .+      
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~----~~~----------~v---~~------   58 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYK----EAK----------SL---ED------   58 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhh----cCC----------cH---hH------
Confidence            45678999999999999999999999999964 79999999999865321    000          11   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|...+.++.+++++.+|+..|.+.+.+.+||++.   +|   +++|++|.+++++
T Consensus        59 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~  108 (109)
T cd04583          59 --------IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD  108 (109)
T ss_pred             --------hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence                    14567788999999999999999999999999963   45   7999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.05  E-value=4.7e-09  Score=88.10  Aligned_cols=119  Identities=19%  Similarity=0.309  Sum_probs=87.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|...|.+.+...+||+|.+ ++++|+++..|+......................++   .+      
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v---~~------   71 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPV---KE------   71 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCH---HH------
Confidence            46788999999999999999999999999974 899999999998765432211000000000011111   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..+++++.+++++.++++.|.+.+.+.+||++   . +   +++|++|.++|++
T Consensus        72 --------~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~  120 (121)
T cd04584          72 --------IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR  120 (121)
T ss_pred             --------HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence                    1456788999999999999999999999999996   2 5   7999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.05  E-value=6.7e-09  Score=86.05  Aligned_cols=111  Identities=23%  Similarity=0.457  Sum_probs=85.7

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++++.++.+|++.|.+++...+||.|.  ++++|+++..|++..+..  ....      .....+   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~--~~~~------~~~~~~---~~------   62 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA--EGRD------PDTTTV---GD------   62 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh--ccCC------cccCCH---HH------
Confidence            4678999999999999999999999999995  899999999998621110  1000      000011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              +|...+.++.+++++.++++.|.+++.+++||++.   .+   +++|++|..|+++
T Consensus        63 --------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~  112 (113)
T cd04622          63 --------VMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR  112 (113)
T ss_pred             --------hccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                    14567788999999999999999999999999962   35   7999999999964

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=99.03  E-value=6e-09  Score=107.17  Aligned_cols=132  Identities=14%  Similarity=0.182  Sum_probs=108.2

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |++.++.|+|..-.++++++.+.|+.++.+.+.+++...+||++.+.++++|++...|++..+..   . ...       
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~-------  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-------  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence            46789999999999999999999999999999999999999998777899999999999864321   1 011       


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       .+..+.+               ..+++..++++.++.++++.|.+++.|...|+|   +.|   ...||||..||++.+
T Consensus       253 -~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilEei  310 (413)
T PRK11573        253 -TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEI  310 (413)
T ss_pred             -CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHHHH
Confidence             1111111               136788999999999999999999999999996   345   599999999999999


Q ss_pred             Hhhhc
Q 013832          327 CRYFR  331 (435)
Q Consensus       327 ~~~~~  331 (435)
                      .....
T Consensus       311 vGei~  315 (413)
T PRK11573        311 VGDFT  315 (413)
T ss_pred             hCCCC
Confidence            86543

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.03  E-value=2.1e-09  Score=93.24  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-Cccccc---ccccccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILK---LPICAIP  348 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-~~~~~~---~~v~~l~  348 (435)
                      .++++.+++++.+|++.|.+++++.+||+|+   .|   +++|++|..|+++++......... ....+.   ..+.+++
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            4678999999999999999999999999963   35   799999999999987643211000 000000   0111121


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN  394 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~  394 (435)
                      ...   .+.+.|.++++++.+++++.+|+++|.+++++++||||++
T Consensus        76 ~~~---~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 TKG---ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hhh---hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            100   0112234678999999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.02  E-value=4e-09  Score=86.75  Aligned_cols=109  Identities=24%  Similarity=0.378  Sum_probs=83.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      .+++++.+.++.+|.+.|.++++..+||+|.  ++++|++|..|+...+......        . ...+   .+      
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--------~-~~~~---~~------   61 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK--------F-SLPV---RE------   61 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc--------c-CcCH---HH------
Confidence            4678899999999999999999999999995  7999999999988755321110        0 0011   11      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                              +|.++++++.+++++.+|+++|.+ . +.+||++.   .+   +++|++|.+||++|
T Consensus        62 --------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~---~~~Gvvt~~di~~~  110 (110)
T cd04609          62 --------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GG---KFVGIITRADLLKY  110 (110)
T ss_pred             --------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CC---eEEEEEeHHHhhcC
Confidence                    145678889999999999998887 3 34788862   35   79999999999754

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.02  E-value=8.4e-09  Score=85.92  Aligned_cols=110  Identities=25%  Similarity=0.523  Sum_probs=90.0

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      ..++++.++.++.+|+..|.++++..+||.+.  .+++|++|..|++..+........          .+   .+     
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~----------~v---~~-----   66 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL----------PV---KE-----   66 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------cH---HH-----
Confidence            57889999999999999999999999999985  379999999999887654322110          01   11     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHh-cCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH-NEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~-~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                               +|.++++++.+++++.+|++.|.+ ++++++||++.  +.+   +++|++|.+|++
T Consensus        67 ---------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~  117 (117)
T COG0517          67 ---------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL  117 (117)
T ss_pred             ---------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence                     266789999999999999999999 79999999974  223   699999999873

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.02  E-value=1.8e-08  Score=105.81  Aligned_cols=132  Identities=12%  Similarity=0.178  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHH
Q 013832          154 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRE  231 (435)
Q Consensus       154 ~~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~  231 (435)
                      +..|..+..+++.++ ....  |  ..+++++++++|+.+|.++|.++++..+||+|..  .++++|+||..|+....  
T Consensus        87 as~E~q~~~Irkvk~-~~~g--m--i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--  159 (505)
T PLN02274         87 NTAEEQAAIVRKAKS-RRVG--F--VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--  159 (505)
T ss_pred             CCHHHHHHHHHHhhc-cccc--c--cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--
Confidence            345555566666653 2222  3  3578899999999999999999999999999863  37999999999985311  


Q ss_pred             hccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCC--ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCC
Q 013832          232 LGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGS  309 (435)
Q Consensus       232 ~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~--~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~  309 (435)
                       ..           ..++   .++              |+++  ++++.+++++.+|+++|.++++..+||++.   .+ 
T Consensus       160 -~~-----------~~~V---~eI--------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g-  206 (505)
T PLN02274        160 -DR-----------ETKL---SEV--------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DG-  206 (505)
T ss_pred             -cc-----------CCcH---HHH--------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC-
Confidence             00           0011   222              4444  889999999999999999999999999963   35 


Q ss_pred             CCeEEEeeeHHhHHHHHH
Q 013832          310 FPQLLHIASLSGILKCVC  327 (435)
Q Consensus       310 ~~~lvGiiT~~dIl~~l~  327 (435)
                        +++|+||.+||++.+.
T Consensus       207 --~LvGvITr~DIlk~~~  222 (505)
T PLN02274        207 --ELVDLVTRTDVKRVKG  222 (505)
T ss_pred             --eEEEEEEHHHHHHHhh
Confidence              7999999999998765

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.02  E-value=5.2e-09  Score=90.82  Aligned_cols=116  Identities=15%  Similarity=0.135  Sum_probs=78.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      +++++.++.++.+|++.|.++++..+||+|++ ++++|+||..|++..+............+-+.... ....+.+... 
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~~-   78 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTKG-   78 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhhh-
Confidence            46789999999999999999999999999964 79999999999988664321110000000000000 0001111100 


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEec
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS  303 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~  303 (435)
                          ..-..|..+++++.+++++.+|++.|.+++++.+||+++
T Consensus        79 ----~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          79 ----ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             ----hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence                000014578899999999999999999999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.00  E-value=7e-09  Score=86.58  Aligned_cols=107  Identities=18%  Similarity=0.309  Sum_probs=82.6

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      +++++..+.++.+|.+.|.++++..+||+|..  .++++|+++..|+... .   ...          ..+   ++.   
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~-~---~~~----------~~v---~~~---   62 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL-T---DSE----------TPL---SEV---   62 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-h---ccC----------CCH---HHh---
Confidence            45688999999999999999999999999962  4799999999997531 1   000          011   221   


Q ss_pred             hcccccCCCccCCCCceEeCC--CCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGP--NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~--~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                 |.....++.+  ++++.++++.|.+++...+||+++   .+   +++|+||.++|++
T Consensus        63 -----------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~---~~~Gvit~~di~~  113 (114)
T cd04602          63 -----------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DG---ELVALVTRSDLKK  113 (114)
T ss_pred             -----------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CC---eEEEEEEHHHhhc
Confidence                       4444555544  999999999999999999999962   45   7999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.00  E-value=9e-09  Score=84.10  Aligned_cols=102  Identities=17%  Similarity=0.317  Sum_probs=83.9

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.++++.+|.+.|.+++...+||+|.  ++++|+++..|+....    ..           -.+   .+.     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~----~~-----------~~~---~~~-----   56 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH----PN-----------RLV---ADA-----   56 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc----cc-----------CCH---HHH-----
Confidence            4567899999999999999999999999983  7999999999986421    00           011   111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                               |..++.++.+++++.+|++.|.+++...+||++   + +   +++|++|.++++
T Consensus        57 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~  103 (105)
T cd04599          57 ---------MTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA  103 (105)
T ss_pred             ---------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence                     446788999999999999999999999999996   2 5   899999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.00  E-value=9e-09  Score=84.52  Aligned_cols=101  Identities=19%  Similarity=0.302  Sum_probs=82.9

Q ss_pred             eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhcc
Q 013832          182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR  261 (435)
Q Consensus       182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~  261 (435)
                      =+++.++.++.+|.+.|.+++...+||+|.  ++++|+++..|+....    .  .          .+   .+.      
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----~--~----------~~---~~~------   55 (104)
T cd04594           3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----Y--G----------DV---VDY------   55 (104)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----c--c----------ch---hhh------
Confidence            357899999999999999999999999995  8999999999986410    0  0          01   111      


Q ss_pred             cccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          262 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       262 ~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              |.....++.++.++.+|+..|.+++.+.+||++    +|   +++|++|.+|++.
T Consensus        56 --------~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~---~~iGvit~~dl~~  103 (104)
T cd04594          56 --------IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DG---KFKGIVTLDSILD  103 (104)
T ss_pred             --------hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CC---EEEEEEEHHHhhc
Confidence                    445678899999999999999999999999995    25   7999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.99  E-value=5e-09  Score=109.35  Aligned_cols=114  Identities=12%  Similarity=0.195  Sum_probs=90.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|++.|.+++++.+||++.   ++   +++|+||..|+++.+.....       ....++.++ 
T Consensus       340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~i-  405 (454)
T TIGR01137       340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVSKV-  405 (454)
T ss_pred             hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHHh-
Confidence            47788999999999999999999999999999963   35   79999999999886653210       012334443 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                                 |.+++.++++++++.+|+++|.+++   .|||+++|+++|+||++||+..+
T Consensus       406 -----------m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       406 -----------MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -----------cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                       3357789999999999999998754   35666679999999999999764

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.99  E-value=1.3e-08  Score=83.14  Aligned_cols=111  Identities=30%  Similarity=0.511  Sum_probs=88.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++.+++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+......  ..     .  .   ..+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~--~~-----~--~---~~~------   62 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD--PL-----V--T---VGD------   62 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC--cc-----c--c---HHH------
Confidence            46788999999999999999999999999964 7999999999998755432211  00     0  0   111      


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                              .|..++..+.+++++.+++..|.+.+.+.+||++.   .+   +++|+++..++++
T Consensus        63 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  112 (113)
T cd02205          63 --------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR  112 (113)
T ss_pred             --------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence                    14567888999999999999999999999999963   35   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.98  E-value=7.9e-10  Score=80.93  Aligned_cols=53  Identities=28%  Similarity=0.468  Sum_probs=49.2

Q ss_pred             CCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          359 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       359 ~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      .|.++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++.+.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            34568999999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.98  E-value=1.4e-08  Score=88.66  Aligned_cols=133  Identities=23%  Similarity=0.417  Sum_probs=91.0

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCC-------CChhhhhhccHHHHH
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN-------LTEEELETHTISAWK  253 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~-------l~~e~l~~~~i~~~~  253 (435)
                      ++++++.++++.+|++.|.++++..+||+|+  ++++|++|..|+...+.........       .....+.  .+..|.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   77 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLR--EFINWE   77 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccch--heeehH
Confidence            4678999999999999999999999999995  7999999999998766432210000       0000000  011121


Q ss_pred             HHHHhhccccc-CCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          254 EGKAYLNRQID-SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       254 e~~~~~~~~~~-~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      +.......... ....+|..++.++.+++++.+|+..|.+.+.+.+||++.    +   +++|++|.+|+++
T Consensus        78 ~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~  142 (143)
T cd04634          78 ETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence            11110000000 001135678899999999999999999999999999962    5   7999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.97  E-value=1.4e-08  Score=83.29  Aligned_cols=105  Identities=23%  Similarity=0.424  Sum_probs=85.1

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++++.+.++.+|.+.|.+++...+||.|.  ++++|+++..|++..     ..  .        .   .+.+.    
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~-----~~--~--------~---~~~~~----   57 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-----DP--D--------E---TVEEI----   57 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc-----Cc--c--------c---cHHHh----
Confidence            35678999999999999999999889999984  799999999998631     00  0        0   11221    


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                                |..++.++.+++++.+|++.|.+++.+++||++.   +|   +++|+++..+|++
T Consensus        58 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~  106 (107)
T cd04610          58 ----------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIR  106 (107)
T ss_pred             ----------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhc
Confidence                      4566788999999999999999999999999963   45   7999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.97  E-value=6.3e-09  Score=86.05  Aligned_cols=102  Identities=20%  Similarity=0.396  Sum_probs=81.1

Q ss_pred             eCCCccHHHHHHHHHHCC-----CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          185 LDIDLPVKQAFHILYEQG-----ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       185 ld~~~~v~eA~~~l~~~~-----i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      +.++.++.+|.+.|.+++     +..+||+|++ ++++|+++..|++..     .  .        ..++   .+.    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~-----~--~--------~~~v---~~~----   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA-----D--P--------DTPV---SDI----   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC-----C--C--------cchH---HHH----
Confidence            578899999999999877     5789999864 799999999988631     0  0        0011   221    


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                                +..++..+.+++++.++++.|.+++.+.+||+++   ++   +++|++|..++++.
T Consensus        59 ----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~  108 (109)
T cd04606          59 ----------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV  108 (109)
T ss_pred             ----------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence                      4466889999999999999999999999999963   35   79999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.96  E-value=1e-08  Score=107.42  Aligned_cols=107  Identities=17%  Similarity=0.267  Sum_probs=86.6

Q ss_pred             EEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          183 VALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       183 i~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      .+++++.|+.+|.+.|.++++..+||+|..  +++++|+||..|+...    ...         ...++   .++     
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~----~~~---------~~~~V---~dI-----  166 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS----RMS---------LDTKV---KDF-----  166 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc----ccC---------CCCCH---HHH-----
Confidence            488999999999999999999999999962  4799999999997421    000         00112   222     


Q ss_pred             ccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          261 RQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       261 ~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                               |+.  +++++.+++++.+|+++|.++++..+||+|.   ++   +++|+||.+||++.
T Consensus       167 ---------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~---~g---~LvGIIT~~Dilk~  218 (502)
T PRK07107        167 ---------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK---NG---NLVYLVFRKDYDSH  218 (502)
T ss_pred             ---------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEhHHHHhc
Confidence                     443  7899999999999999999999999999962   35   79999999999874

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=1.6e-08  Score=83.10  Aligned_cols=104  Identities=23%  Similarity=0.417  Sum_probs=84.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      +++++.++.++.+++..|.+.+...+||++.   ++   +++|+++..++++..    .         ..++.++     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~~~~~-----   57 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQLALL-----   57 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cchHHHH-----
Confidence            4578889999999999999999999999963   25   799999999996410    0         0122222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                             +.++..++.+++++.+|+++|.+++.+.+||+|+ |+++|+|+..|++.
T Consensus        58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                   2246778999999999999999999999999985 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.95  E-value=7e-09  Score=106.66  Aligned_cols=128  Identities=16%  Similarity=0.287  Sum_probs=105.2

Q ss_pred             HHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhc-----CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832          256 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  330 (435)
Q Consensus       256 ~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~-----~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~  330 (435)
                      ....++..+..|..|+..++++.++.|+.+|+.++++.     .+..+.|+|.   .+   +++|+++.++++..     
T Consensus       124 ~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~a-----  192 (451)
T COG2239         124 RQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLTA-----  192 (451)
T ss_pred             HHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhcC-----
Confidence            33455667788999999999999999999999999843     5788999973   44   79999999999621     


Q ss_pred             cccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       331 ~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                              .....++++            |.+.++++.+++...++.+++.+++.-++||||++++++|+||..|++..+
T Consensus       193 --------~~~~~i~~i------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi  252 (451)
T COG2239         193 --------EPDELLKDL------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             --------CcHhHHHHH------------hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHH
Confidence                    012344444            345688999999999999999999999999999999999999999999987


Q ss_pred             hhcc
Q 013832          411 KDKA  414 (435)
Q Consensus       411 ~~~~  414 (435)
                      ...+
T Consensus       253 ~eEa  256 (451)
T COG2239         253 EEEA  256 (451)
T ss_pred             HHHH
Confidence            7653

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.93  E-value=1.2e-08  Score=83.95  Aligned_cols=106  Identities=18%  Similarity=0.359  Sum_probs=82.4

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|.+.|.+++...+||.|.+ ++++|+++..|+....    .  ..        .++   .+.     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~----~--~~--------~~v---~~~-----   59 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET----D--LD--------KPV---SEV-----   59 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc----c--CC--------CCH---HHh-----
Confidence            46788999999999999999999999999964 8999999999874210    0  00        011   111     


Q ss_pred             ccccCCCccCCCCceEeCC-CCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGP-NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~-~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |...+..+.+ ++++.+|++.|.+.+.+.+||+++   ++   +++|++|.+|+++
T Consensus        60 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~  109 (110)
T cd04601          60 ---------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK  109 (110)
T ss_pred             ---------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence                     3344455566 999999999999999999999963   35   7999999999974

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.91  E-value=3e-08  Score=83.05  Aligned_cols=113  Identities=15%  Similarity=0.215  Sum_probs=84.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCC-CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQG-ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~-i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      ++.++.+++++.+|++.|.+++ +..+||+|+  ++++|+++..|+..++.....      .+.....++   .+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~v---~~-----   65 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKKPV---SE-----   65 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCCcH---HH-----
Confidence            3557889999999999999887 899999996  899999999998765432100      000111111   11     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCc---EEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVA---TVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~---~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               +|..++.++.+++++.+|+..|.+++..   ..||++.   .|   +++|+||..++++
T Consensus        66 ---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~  118 (119)
T cd04598          66 ---------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR  118 (119)
T ss_pred             ---------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence                     2567888999999999999999988864   4467753   35   7999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.90  E-value=2.5e-08  Score=103.76  Aligned_cols=110  Identities=15%  Similarity=0.377  Sum_probs=90.4

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC--CeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHH
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK--ARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKA  257 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~--~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~  257 (435)
                      .++++++++.|+.+|.+.|.++++..+||+|...  ++++|+||..|+....    ..          ..++   ++.  
T Consensus        88 ~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~----------~~~V---~dv--  148 (450)
T TIGR01302        88 SDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK----------GKPV---SEV--  148 (450)
T ss_pred             cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC----------CCCH---HHh--
Confidence            3788999999999999999999999999999643  6999999999985311    00          0112   221  


Q ss_pred             hhcccccCCCccCC-CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          258 YLNRQIDSHGKAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       258 ~~~~~~~~~g~~~~-~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                                  |. .+++++.+++++.+|++.|.+++.+.+||+|   +.|   +++|+||..||++.+
T Consensus       149 ------------m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---e~G---~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       149 ------------MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---KNG---ELVGLITMKDIVKRR  200 (450)
T ss_pred             ------------hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEhHHhhhcc
Confidence                        45 4889999999999999999999999999996   345   799999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.85  E-value=2.2e-08  Score=97.09  Aligned_cols=114  Identities=12%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.++|... .+.++.++.++.+|.+.|.+.++..+||+|++ ++++|+++..|+...+...  .  ..      .-++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~--~--~~------~~~v  222 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGG--G--SL------KSEV  222 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcC--C--cc------cCcH
Confidence            4666777443 27789999999999999999999999999964 7999999999997754210  0  00      0011


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeee
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS  318 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT  318 (435)
                         ++              +|.++++++.+++++.+|+++|.+++++.+||++   ++|   +++|+|+
T Consensus       223 ---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~GvI~  268 (268)
T TIGR00393       223 ---RD--------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD---DHN---KVLGVLH  268 (268)
T ss_pred             ---HH--------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---eEEEEEC
Confidence               22              2567888999999999999999999999999996   245   7999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.85  E-value=8.2e-08  Score=100.78  Aligned_cols=110  Identities=16%  Similarity=0.257  Sum_probs=89.1

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHH
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKA  257 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~  257 (435)
                      ..+++++++.|+.+|.++|.++++..+||+|+.  .++++|++|..|+.. .    .. .        ..++   ++.  
T Consensus       104 ~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~----~~-~--------~~~V---~di--  164 (495)
T PTZ00314        104 MDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-V----KD-K--------STPV---SEV--  164 (495)
T ss_pred             cCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-c----cc-C--------CCCH---HHh--
Confidence            356799999999999999999999999999964  379999999999752 1    10 0        0112   222  


Q ss_pred             hhcccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          258 YLNRQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       258 ~~~~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                                  |++  +++++.+++++.+|+++|.++++..+||+|.   ++   +++|+||.+||++..
T Consensus       165 ------------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~  217 (495)
T PTZ00314        165 ------------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR  217 (495)
T ss_pred             ------------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence                        444  7899999999999999999999999999963   34   799999999998764

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.84  E-value=2.5e-08  Score=96.91  Aligned_cols=110  Identities=15%  Similarity=0.289  Sum_probs=92.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ....++.+++++.+-.++-.+.+.+|+||+|.   .-   +++|++|.+|++..       .+      +.++..     
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------~~------~t~ieK-----  253 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------KP------STTIEK-----  253 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------CC------CccHHH-----
Confidence            56778899999999999999999999999973   33   79999999999631       11      233333     


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                             .|.++.+++.+.+++..+..+|.=.++.-+||||++.+|+|+|||+|++..+..
T Consensus       254 -------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         254 -------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             -------HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence                   345788999999999999999999999999999999999999999999986653

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.84  E-value=5.1e-08  Score=101.76  Aligned_cols=127  Identities=17%  Similarity=0.263  Sum_probs=97.2

Q ss_pred             HHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh
Q 013832          162 RVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE  241 (435)
Q Consensus       162 ~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~  241 (435)
                      ...++|+..++.++|.  .+++++.+++++.+|++.|.++++..+||+|. .++++|+||..|+...+.......     
T Consensus       327 ~~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~-----  398 (454)
T TIGR01137       327 TVFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANP-----  398 (454)
T ss_pred             cHHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCc-----
Confidence            3556688899999984  46889999999999999999999999999996 479999999999887553211000     


Q ss_pred             hhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832          242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  321 (435)
Q Consensus       242 e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d  321 (435)
                          ..++   .+              +|.+++.++.+++++.+++..|.+++   .||+++   ++   +++|+||.+|
T Consensus       399 ----~~~v---~~--------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGvvt~~d  448 (454)
T TIGR01137       399 ----DDAV---SK--------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGVVTKID  448 (454)
T ss_pred             ----CCCH---HH--------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEEEEHHH
Confidence                0011   11              15677889999999999999998754   344542   35   7999999999


Q ss_pred             HHHHH
Q 013832          322 ILKCV  326 (435)
Q Consensus       322 Il~~l  326 (435)
                      |++.+
T Consensus       449 ll~~l  453 (454)
T TIGR01137       449 LLSFL  453 (454)
T ss_pred             HHHhh
Confidence            99875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.82  E-value=1e-07  Score=78.16  Aligned_cols=104  Identities=22%  Similarity=0.402  Sum_probs=84.2

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhc
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLN  260 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~  260 (435)
                      ++++++.+.++.+|+..|.+++...+||+|.+ ++++|+++..|+...     .  ...           .+.+.     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~-----~--~~~-----------~~~~~-----   57 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRN-----P--EEE-----------QLALL-----   57 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhc-----c--ccc-----------hHHHH-----
Confidence            56789999999999999999999999999965 799999999998631     0  000           11111     


Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                               |..++.++.+++++.+++..|.+++.+.+||++    .+   +++|++|..++++
T Consensus        58 ---------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~---~~~G~it~~d~~~  105 (106)
T cd04638          58 ---------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DG---KLVGIVTVADIVR  105 (106)
T ss_pred             ---------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHhhc
Confidence                     346678899999999999999999999999996    24   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.76  E-value=1e-07  Score=98.84  Aligned_cols=130  Identities=18%  Similarity=0.354  Sum_probs=108.1

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.++|..-..++.++.+.++.++...+.+++..++||++...+.++|++...|++..+.....   ..       
T Consensus       203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~-------  272 (429)
T COG1253         203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DL-------  272 (429)
T ss_pred             cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---cc-------
Confidence            46789999999999999999999999999999999999999999777899999999999875432210   00       


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       ..   +   .            .-++++.+++..++.++++.|.+.+.|...|+|   +.|   .+.|++|..||++.+
T Consensus       273 -~~---~---~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---EyG---~~~GlVTleDIiEeI  327 (429)
T COG1253         273 -DL---R---V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---EYG---GVEGLVTLEDIIEEI  327 (429)
T ss_pred             -ch---h---h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---cCC---CeEEEeEHHHHHHHH
Confidence             00   0   0            113788899999999999999999999999997   345   599999999999999


Q ss_pred             Hhhhc
Q 013832          327 CRYFR  331 (435)
Q Consensus       327 ~~~~~  331 (435)
                      .....
T Consensus       328 vGei~  332 (429)
T COG1253         328 VGEIP  332 (429)
T ss_pred             hCCCc
Confidence            87554

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.71  E-value=9.6e-08  Score=92.92  Aligned_cols=121  Identities=18%  Similarity=0.273  Sum_probs=101.8

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.|+|.+..+.-.+..++++.+=..+-.+.|...+||+|. ..+++|++|.+|+++      +.++         -+|
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~------~~~~---------t~i  251 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLD------KKPS---------TTI  251 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhc------CCCC---------ccH
Confidence            478889988788889999999999999999999999999996 479999999999864      1111         012


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                      ..                 .|+++++++.+.+++.-++.+|.=.++..+||+++   +.   .++|++|++|+++.+...
T Consensus       252 eK-----------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~lq~~  308 (432)
T COG4109         252 EK-----------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSLQMI  308 (432)
T ss_pred             HH-----------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHHHHh
Confidence            11                 28899999999999999999999999999999974   23   799999999999988654

>PRK11573 hypothetical protein; Provisional

Probab=98.69  E-value=2.1e-07  Score=95.79  Aligned_cols=123  Identities=12%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      .+..+++++.++++.++++.+.+.+.+|+||.+++ .+    +++|++..+|++..+... +.         .++..+  
T Consensus       195 Pr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D----~IiGiv~~kDll~~~~~~-~~---------~~~~~l--  257 (413)
T PRK11573        195 PRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS-LD----DAISMLRVREAYRLMTEK-KE---------FTKENM--  257 (413)
T ss_pred             ccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC-CC----ceEEEEEHHHHHHHhhcc-Cc---------CCHHHH--
Confidence            35689999999999999999999999999999632 22    699999999998754321 00         011111  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH  417 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~  417 (435)
                      ...        -+|+..|+++.++.++++.|.+++.+-.-|||+.|...|+||..||+.-+-...+.+
T Consensus       258 ~~~--------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de  317 (413)
T PRK11573        258 LRA--------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS  317 (413)
T ss_pred             Hhh--------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence            011        147888999999999999999999998889999999999999999999777665544

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.66  E-value=1.2e-07  Score=74.41  Aligned_cols=69  Identities=30%  Similarity=0.462  Sum_probs=57.1

Q ss_pred             eEEEEecC-CCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCC-ceEEEEEEECCeeecCCCCCeeeCC
Q 013832           27 PMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSE   97 (435)
Q Consensus        27 ~~~f~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~~~ykF~VDg~w~~d~~~~~~~d~   97 (435)
                      .++|.+.. .+++|.|.++|++|....+|.+.  ..|.|++.+++.. +.|.|+|.|||.|.+++.++...+.
T Consensus         5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~   75 (83)
T cd02688           5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG   75 (83)
T ss_pred             cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence            46777754 47999999999997666899875  4699999999988 9999999999999999988555443

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.54  E-value=1.3e-06  Score=88.34  Aligned_cols=112  Identities=11%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccc
Q 013832          273 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  352 (435)
Q Consensus       273 ~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~  352 (435)
                      ..+...++.+..+++..|...+...+.|++.   .+   ++.|.++.+++.+++...            .++.+.     
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~-----  307 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGLQDV-----  307 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence            3345667889999999999999999999963   34   699999999987665421            112222     


Q ss_pred             ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          353 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       353 ~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                             +...+.++.++++|.+|+.+|.+++.. +||||++|+++|+|++.+|+..+....|
T Consensus       308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~  362 (363)
T TIGR01186       308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE  362 (363)
T ss_pred             -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence                   123567899999999999999999999 9999999999999999999998876654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.52  E-value=8.1e-07  Score=88.04  Aligned_cols=167  Identities=17%  Similarity=0.282  Sum_probs=116.1

Q ss_pred             HHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCce
Q 013832          199 YEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLV  275 (435)
Q Consensus       199 ~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v  275 (435)
                      -.+.-...|++.+    ...-+|..+...++..+.-.+   .|.+.|+ ....+..|+....         |  ...+++
T Consensus        56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~---------g--~~~~p~  119 (503)
T KOG2550|consen   56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYEN---------G--FINNPI  119 (503)
T ss_pred             hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhc---------c--cccCCc
Confidence            3444455688864    366788888777666554221   2333222 1112334443322         2  235667


Q ss_pred             EeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccc
Q 013832          276 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPK  355 (435)
Q Consensus       276 ~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~  355 (435)
                      .+.|+.++.++++.-..++...+||.....-.   ++|+|+||-+|+ .|+.++           ...+.+++       
T Consensus       120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi-~f~~~~-----------~~~~~~vm-------  177 (503)
T KOG2550|consen  120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDI-QFLEDN-----------SLLVSDVM-------  177 (503)
T ss_pred             ccCCcccchhhhhhcccccccccccccCCccc---ceeEEEEehhhh-hhhhcc-----------cchhhhhc-------
Confidence            89999999999999999999999999532222   489999999998 555222           13333332       


Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                           ....++.+.+.+|.++-++|.+++-..+||||++|+|+-+|+|+||.+
T Consensus       178 -----t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  178 -----TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             -----ccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence                 234478899999999999999999999999999999999999999875

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.52  E-value=1.7e-06  Score=89.75  Aligned_cols=122  Identities=16%  Similarity=0.186  Sum_probs=99.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      .+.+++++..+.++.++.+.+.+.+.+|+||.++ +.+    .++|++..+|++........ ..    ...        
T Consensus       214 PR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~-~~----~~~--------  275 (429)
T COG1253         214 PRTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQS-DL----DLR--------  275 (429)
T ss_pred             ecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCcc-cc----chh--------
Confidence            3568899999999999999999999999999973 233    69999999999987664311 00    000        


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI  418 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l  418 (435)
                       ..        -+|++.+++..++.++++.|.+.+.+-.-|+|+.|...|++|..||+..+-...+.+-
T Consensus       276 -~~--------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~  335 (429)
T COG1253         276 -VL--------VRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH  335 (429)
T ss_pred             -hc--------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence             00        1267789999999999999999999988899999999999999999998887766554

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.51  E-value=3.5e-07  Score=66.72  Aligned_cols=53  Identities=26%  Similarity=0.536  Sum_probs=48.4

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|.+||++++.
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKALL   56 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhhhh
Confidence            37789999999999999999999999999999963   35   8999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.41  E-value=1.1e-06  Score=72.11  Aligned_cols=64  Identities=25%  Similarity=0.552  Sum_probs=48.7

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc--------CCc-eEEEEEEE-CCee--ecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~~~ykF~V-Dg~w--~~d~~~~~   93 (435)
                      ++| +|...|++|+|+|+||+|+.. .+|.+.  ..|+|+++++.        +.| .|+|++.. ||+|  +.||-...
T Consensus         7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~   84 (99)
T cd02854           7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY   84 (99)
T ss_pred             EEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence            445 466679999999999999874 689885  48999999874        456 77777777 7876  56776653

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=4e-06  Score=85.91  Aligned_cols=107  Identities=12%  Similarity=0.172  Sum_probs=85.8

Q ss_pred             eCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCccccccc
Q 013832          277 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI  356 (435)
Q Consensus       277 v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~  356 (435)
                      ..++.+..+|+..|...+.+.+.|+|.   .+   +++|+++..++.+.....            .++.+.         
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~---------  342 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLDAA---------  342 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence            446778999999999999999999963   45   799999999997654321            112221         


Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       357 g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                         +...+.++.++++|.+|+..|.+.... +||||++|+++|+|++.++++.+...-
T Consensus       343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~~  396 (400)
T PRK10070        343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDREG  396 (400)
T ss_pred             ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhcC
Confidence               113567899999999999999997776 999999999999999999999876543

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.36  E-value=3.3e-06  Score=83.21  Aligned_cols=131  Identities=18%  Similarity=0.301  Sum_probs=108.7

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ...|+.|+|..-+.+..++.+++.++.++.+.+.-...+|||-.+-.+.+||+-.+|+++.+.+...    +..+     
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~-----  268 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKE-----  268 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHh-----
Confidence            5679999999999999999999999999999999999999998777789999999998877654321    2111     


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                         .+...               -.++..++..+++.+-+..|.+++-|--.|+|   +.|   .+.|++|..||++.+.
T Consensus       269 ---d~~~~---------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEEIV  324 (423)
T COG4536         269 ---DILRA---------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEEIV  324 (423)
T ss_pred             ---HHHHH---------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHHHh
Confidence               11111               14667899999999999999999999999996   467   7999999999999998


Q ss_pred             hhhc
Q 013832          328 RYFR  331 (435)
Q Consensus       328 ~~~~  331 (435)
                      ..+.
T Consensus       325 Gdft  328 (423)
T COG4536         325 GDFT  328 (423)
T ss_pred             cccc
Confidence            7765

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.30  E-value=4e-06  Score=77.69  Aligned_cols=119  Identities=13%  Similarity=0.158  Sum_probs=97.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      .+...+++..+.++.+++..|.+...+|+||+..+ .+    .+.||+-.+|+|+++......         ..+.++  
T Consensus        75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD----~v~GIL~AKDLL~~~~~~~~~---------F~i~~l--  138 (293)
T COG4535          75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD----HVEGILLAKDLLPFMRSDAEP---------FDIKEL--  138 (293)
T ss_pred             cHHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch----hhhhhhhHHHHHHHhcCCccc---------ccHHHh--
Confidence            45688999999999999999999999999999642 22    699999999999997643211         112222  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                                 -+|.+.|++.-.|...++-+...+.+---|||+-|.+-|++|..||+..+-...=
T Consensus       139 -----------LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE  193 (293)
T COG4535         139 -----------LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE  193 (293)
T ss_pred             -----------cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence                       1588899999999999999999888877799999999999999999988766543

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.21  E-value=2.1e-05  Score=81.24  Aligned_cols=131  Identities=24%  Similarity=0.341  Sum_probs=103.9

Q ss_pred             HHHHHHHHhhc--cCceecccCCCCCeEEeCCCccHHHHHHHHHH-----CCCceeeeeeCCCCeEEEeeehHHHHHHHH
Q 013832          158 VSRHRVSVFLS--THTAYELLPESGKVVALDIDLPVKQAFHILYE-----QGISMAPLWDFSKARFVGVLSASDFILILR  230 (435)
Q Consensus       158 ~~~~~i~~~l~--~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~-----~~i~s~PV~D~~~~~~vGilT~~D~i~il~  230 (435)
                      ..+..++..|+  ..++..+|  ....+++..+.|+++|+..+.+     ..+..+-|+|.+ ++++|++|.++++.   
T Consensus       118 ~~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll~---  191 (451)
T COG2239         118 EERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLLT---  191 (451)
T ss_pred             HHHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHhc---
Confidence            45666666665  46777788  4588999999999999999995     446788899975 69999999999863   


Q ss_pred             HhccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCC
Q 013832          231 ELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF  310 (435)
Q Consensus       231 ~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~  310 (435)
                         .++            -..+++.              |.+.++++.+++...++++.+.+++.-.+||+|+   ++  
T Consensus       192 ---a~~------------~~~i~~i--------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~--  237 (451)
T COG2239         192 ---AEP------------DELLKDL--------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN--  237 (451)
T ss_pred             ---CCc------------HhHHHHH--------------hcccceeecccCCHHHHHHHHHHhCCeecceECC---CC--
Confidence               111            0012222              5667999999999999999999999999999973   45  


Q ss_pred             CeEEEeeeHHhHHHHHHhh
Q 013832          311 PQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       311 ~~lvGiiT~~dIl~~l~~~  329 (435)
                       +++|++|..|++..+.+.
T Consensus       238 -~LiG~itiDDiidvi~eE  255 (451)
T COG2239         238 -RLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             -ceeeeeeHHHHHHHHHHH
Confidence             899999999999988754

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.20  E-value=1.2e-06  Score=69.53  Aligned_cols=57  Identities=33%  Similarity=0.610  Sum_probs=43.7

Q ss_pred             EEE-EecCCCcEEEEEeecCC-CCCC-CCCccccCCCCeEEEEEE--cCCceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~g~~~ykF~VDg~w   85 (435)
                      ++| +|...|++|.|++.|++ |... ++|++. ...|+|+++++  +++|.+.|+|.||+..
T Consensus        13 ~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   13 VTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             EEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            444 35667999999999999 8755 699842 46899999998  8888888888887643

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.16  E-value=6.4e-06  Score=76.38  Aligned_cols=127  Identities=16%  Similarity=0.288  Sum_probs=102.5

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|-.-++.+++..+.++.+....+.+..-+.+||+.+++..+.|||=+.|++.++..   ....+        .
T Consensus        66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~---~~~~F--------~  134 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRS---DAEPF--------D  134 (293)
T ss_pred             HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcC---Ccccc--------c
Confidence            345566666666899999999999999999999999999999888899999999999876532   11111        1


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +   ++               +-+|.+.++.+..+...++-++.++.|...|+|   +-|   -+-|++|..||+..+..
T Consensus       135 i---~~---------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD---EfG---gVsGLVTIEDiLEqIVG  190 (293)
T COG4535         135 I---KE---------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID---EFG---GVSGLVTIEDILEQIVG  190 (293)
T ss_pred             H---HH---------------hcccceecccchhHHHHHHHHHhhcCceEEEEe---ccC---CeeeeEEHHHHHHHHhc
Confidence            1   22               237889999999999999999999999999996   344   49999999999999885


Q ss_pred             hh
Q 013832          329 YF  330 (435)
Q Consensus       329 ~~  330 (435)
                      ..
T Consensus       191 dI  192 (293)
T COG4535         191 DI  192 (293)
T ss_pred             cc
Confidence            43

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.10  E-value=5.6e-06  Score=69.43  Aligned_cols=52  Identities=27%  Similarity=0.443  Sum_probs=46.3

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       357 g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ++.|.+++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||..
T Consensus        61 ~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          61 RDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            3444567889999999999999999999999999999999999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.04  E-value=1.5e-05  Score=54.50  Aligned_cols=47  Identities=30%  Similarity=0.543  Sum_probs=43.1

Q ss_pred             ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       364 v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                      ++++.+++++.++++.|.+++++.+||++++++++|+++..|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            46789999999999999999999999999889999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.87  E-value=4.2e-05  Score=79.79  Aligned_cols=143  Identities=13%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             CccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh-c-ccCC--Ccccc--
Q 013832          267 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-R-HCSS--SLPIL--  340 (435)
Q Consensus       267 g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~-~-~~~~--~~~~~--  340 (435)
                      +.+|+++++++..-+.+...++.+.....+.+||+|+.+. +....+.|+|-++.++..+.... . ..+.  .++..  
T Consensus       585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~-~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~  663 (762)
T KOG0474|consen  585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS-NEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRK  663 (762)
T ss_pred             hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCC-ccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhc
Confidence            3468899999999999999999999999999999985322 11237999999999998876542 1 1000  01100  


Q ss_pred             ---------ccccccccCccccc----ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          341 ---------KLPICAIPVGTWVP----KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       341 ---------~~~v~~l~igt~~~----~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                               ..+++++.+.....    .....|.....++.+++++..|+.++.+-+.+++-||++..+++|++||+|+.
T Consensus       664 ~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~  743 (762)
T KOG0474|consen  664 FTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLA  743 (762)
T ss_pred             CCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhh
Confidence                     01122222111100    01123445667899999999999999999999999999989999999999998


Q ss_pred             HHH
Q 013832          408 ALA  410 (435)
Q Consensus       408 ~~~  410 (435)
                      ..-
T Consensus       744 ~~~  746 (762)
T KOG0474|consen  744 RYR  746 (762)
T ss_pred             hHH
Confidence            654

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.83  E-value=0.00027  Score=71.65  Aligned_cols=108  Identities=14%  Similarity=0.293  Sum_probs=84.8

Q ss_pred             EEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhccc
Q 013832          183 VALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQ  262 (435)
Q Consensus       183 i~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~  262 (435)
                      +...++.+..+|+..|..++...+.|+|.+ +++.|.++..++...+..   . .             .+.+.       
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---~-~-------------~~~~~-------  307 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK---A-Q-------------GLQDV-------  307 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc---C-C-------------chhhh-------
Confidence            345667789999999999999999999964 799999999987643321   0 0             01111       


Q ss_pred             ccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          263 IDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       263 ~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                             +...+.++.++++|.+++..|.+.+.. +||+|   ++|   +++|+||..++++.+...
T Consensus       308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD---EDQ---RLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC---CCC---cEEEEEEHHHHHHHHHhh
Confidence                   234567899999999999999999999 99996   346   899999999999988753

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.78  E-value=7e-05  Score=61.06  Aligned_cols=56  Identities=25%  Similarity=0.548  Sum_probs=45.8

Q ss_pred             eeEEEEec---CCCcEEEEEeecC---CCCC--CCCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 013832           26 IPMRFVWP---YGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        26 ~~~~f~w~---~~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +.++|.-.   ..+++|+|+||..   +|++  .++|...++  ....|++++.||.| .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            66777774   3589999999987   7997  378887533  46899999999999 89999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.74  E-value=0.00035  Score=71.75  Aligned_cols=106  Identities=16%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             eCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhhccccc
Q 013832          185 LDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQID  264 (435)
Q Consensus       185 ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~  264 (435)
                      ...+.+..+|+..|.+++..++.|+|.+ ++++|+++..++......   . .             .+.+.         
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---~-~-------------~~~~~---------  342 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQ---Q-Q-------------GLDAA---------  342 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhc---C-C-------------chhhh---------
Confidence            4466789999999999999999999964 799999999998643321   0 0             01111         


Q ss_pred             CCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       265 ~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                           +.....++.++++|.+|+..|.+.... +||+|   ++|   +++|+||..++++.+...
T Consensus       343 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        343 -----LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD---EDQ---QYVGIISKGMLLRALDRE  395 (400)
T ss_pred             -----hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC---CCC---cEEEEEEHHHHHHHHHhc
Confidence                 224567899999999999999997666 99996   346   899999999999988653

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.73  E-value=0.00017  Score=58.57  Aligned_cols=53  Identities=23%  Similarity=0.459  Sum_probs=42.2

Q ss_pred             eEEEEecC---CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           27 PMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        27 ~~~f~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +++|.-++   .|++|+|+|+   |.+|++.  ++|+..  ..+.|++++.||++ .++|||++
T Consensus         2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence            45555542   4899999995   8899865  588764  46889999999988 89999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.71  E-value=7.8e-05  Score=79.80  Aligned_cols=57  Identities=26%  Similarity=0.429  Sum_probs=50.7

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      +++.|.++++++++++++.+|+++|.+++++.+||||++|+++|++|..||.+...+
T Consensus        70 V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~  126 (546)
T PRK14869         70 VRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD  126 (546)
T ss_pred             HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence            344456789999999999999999999999999999999999999999999986554

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.00017  Score=76.95  Aligned_cols=169  Identities=20%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             eeEEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-----eecCCCCCeeeCC
Q 013832           26 IPMRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFISSE   97 (435)
Q Consensus        26 ~~~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-----w~~d~~~~~~~d~   97 (435)
                      ..++| +|...+++|.|.|+||+|... .+|... +..|.|+++++ +++| +.|||.+++.     +..||-.-.....
T Consensus        36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~~  113 (628)
T COG0296          36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEVG  113 (628)
T ss_pred             CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCCC
Confidence            34555 577779999999999999985 355432 35799999999 9999 9999999653     2555544322222


Q ss_pred             CCCeeeEEEecCCCCCCCCC--CCCCCCCCCCCchhhhhccccccCCCcchhcccccH-HHHHHHHHHHHHhhccCceec
Q 013832           98 YGIVNTVLLATEPNFMHGIN--QGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISE-ADLQVSRHRVSVFLSTHTAYE  174 (435)
Q Consensus        98 ~G~~nnvl~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~i~~~l~~~~~~d  174 (435)
                      -++-.  +.+..+++.-.-.  .....+...+--.-+     ++--|+|+. + +..+ .+....+.++-.-| ..|+-|
T Consensus       114 p~~aS--~v~~~~~y~W~d~~~~~~~~~~~~e~~vIY-----ElHvGs~~~-~-~~~~~~e~a~~llpYl~el-G~T~IE  183 (628)
T COG0296         114 PHTAS--QVVDLPDYEWQDERWDRAWRGRFWEPIVIY-----ELHVGSFTP-D-RFLGYFELAIELLPYLKEL-GITHIE  183 (628)
T ss_pred             CCCcc--eecCCCCcccccccccccccCCCCCCceEE-----EEEeeeccC-C-CCcCHHHHHHHHhHHHHHh-CCCEEE
Confidence            22211  1122222220000  000001111111111     233588887 4 4333 55555555555555 589999


Q ss_pred             ccCCCCC----------eEEeCC------CccHHHHHHHHHHCCCcee
Q 013832          175 LLPESGK----------VVALDI------DLPVKQAFHILYEQGISMA  206 (435)
Q Consensus       175 l~p~s~~----------vi~ld~------~~~v~eA~~~l~~~~i~s~  206 (435)
                      +||-+..          +--..+      -.-++.-+...++.||.-+
T Consensus       184 LMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi  231 (628)
T COG0296         184 LMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI  231 (628)
T ss_pred             EcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence            9998632          111111      1235666666777777654

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.64  E-value=0.00017  Score=59.25  Aligned_cols=63  Identities=22%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC-----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-----eecCCCCCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI   94 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-----w~~d~~~~~~   94 (435)
                      ++| +|...|++|.|+. |++|.     ..++|.+  ..+|+|++.++ +.+|.+ |+|.|+|.     ...||-...+
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~   84 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL   84 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence            456 6777799999998 88886     3468887  46899999987 555654 88888765     6667766543

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.64  E-value=0.00023  Score=70.53  Aligned_cols=118  Identities=13%  Similarity=0.199  Sum_probs=93.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      .+..+..+..+++..++++.+...-..|+|+..++     ..+++||+..+++++++.+... ..      ...+..+  
T Consensus       208 pR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~-----~DnIiGvlh~r~llr~l~e~~~-~~------k~d~~~~--  273 (423)
T COG4536         208 PRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD-----LDNIIGVLHVRDLLRLLNEKNE-FT------KEDILRA--  273 (423)
T ss_pred             cccceeeecCCCCHHHHHHHHhhCCCCceeeecCC-----hhHhhhhhhHHHHHHHhhccCc-cc------HhHHHHH--
Confidence            45688899999999999999999999999999532     2269999999999999886421 10      0111111  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                         .        .++..|++.++|.+-+..|.+++-+---||||-|.+.|++|..||+.-+-.
T Consensus       274 ---a--------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         274 ---A--------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             ---h--------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence               0        255679999999999999999998888899999999999999999976554

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.61  E-value=0.00025  Score=70.70  Aligned_cols=126  Identities=15%  Similarity=0.247  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeC--CCCeEEEeeehHHHHHHHHHh
Q 013832          155 DLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDF--SKARFVGVLSASDFILILREL  232 (435)
Q Consensus       155 ~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~--~~~~~vGilT~~D~i~il~~~  232 (435)
                      ++...-+.+..|-...        ....+++.++.++.+++.+...+++..+||...  ..++++|++|.+|+ +++.  
T Consensus        99 ~QA~~v~~vK~~~~g~--------~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~--  167 (503)
T KOG2550|consen   99 DQADMVRRVKNYENGF--------INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLE--  167 (503)
T ss_pred             HHHHHHHHHHHhhccc--------ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhh--
Confidence            3333445555555332        346679999999999999999999999999852  24689999999996 3331  


Q ss_pred             ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832          233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  312 (435)
Q Consensus       233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~  312 (435)
                       .+. .            -+.+              +|+...++.....+|.++-+++.+.+-..+||++.   .|   +
T Consensus       168 -~~~-~------------~~~~--------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~g---e  213 (503)
T KOG2550|consen  168 -DNS-L------------LVSD--------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KG---E  213 (503)
T ss_pred             -ccc-c------------hhhh--------------hcccccccccccccHHHHHHHHHhhhcCCcceecc---CC---c
Confidence             110 0            0112              25555688999999999999999999999999973   45   7


Q ss_pred             EEEeeeHHhHHHH
Q 013832          313 LLHIASLSGILKC  325 (435)
Q Consensus       313 lvGiiT~~dIl~~  325 (435)
                      ++.+|+..|+.+.
T Consensus       214 lva~~~rtDl~k~  226 (503)
T KOG2550|consen  214 LVAMLSRTDLMKN  226 (503)
T ss_pred             eeeeeehhhhhhh
Confidence            9999999999764

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.59  E-value=0.00045  Score=58.78  Aligned_cols=48  Identities=23%  Similarity=0.503  Sum_probs=40.0

Q ss_pred             CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEEC
Q 013832           35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD   82 (435)
Q Consensus        35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VD   82 (435)
                      .++.|+|+|+   +.+|++.  .+|.+.....+.|++.+.||++ .++|||++.
T Consensus        14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814          14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            4899999999   8999854  5887642246889999999998 999999994

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00023  Score=74.42  Aligned_cols=152  Identities=13%  Similarity=0.138  Sum_probs=104.1

Q ss_pred             hhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC----CeEEEeeehHHHHHHHHHhc---cCCCC
Q 013832          166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK----ARFVGVLSASDFILILRELG---NHGSN  238 (435)
Q Consensus       166 ~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~----~~~vGilT~~D~i~il~~~~---~~~~~  238 (435)
                      .+++.++.|+|  +.+|+++..-..+...+++|....-...||+|...    +++.|++=.+.++..++.-.   +.+++
T Consensus       578 ~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~  655 (762)
T KOG0474|consen  578 YMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST  655 (762)
T ss_pred             HhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence            45667888888  45999999999999999999999999999999643    47889998998887775322   11111


Q ss_pred             C--------Chhhhhh--ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCC
Q 013832          239 L--------TEEELET--HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG  308 (435)
Q Consensus       239 l--------~~e~l~~--~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g  308 (435)
                      .        ..+++..  ..++...-.......-.|- -..|...+.++.+++|+..+..++++-+.+++.|+..  .. 
T Consensus       656 ~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl-~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~~-  731 (762)
T KOG0474|consen  656 FDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDL-HPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--TN-  731 (762)
T ss_pred             cCcchhhcCCHHHhhhcCCchhhhhcchHhHhhcccc-ccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--CC-
Confidence            1        1111111  0111100000000000111 1256778889999999999999999999999999963  33 


Q ss_pred             CCCeEEEeeeHHhHHHHH
Q 013832          309 SFPQLLHIASLSGILKCV  326 (435)
Q Consensus       309 ~~~~lvGiiT~~dIl~~l  326 (435)
                         +++||+|++|+.++-
T Consensus       732 ---~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  732 ---RVVGILTRKDLARYR  746 (762)
T ss_pred             ---ceeEEEehhhhhhHH
Confidence               589999999998654

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.55  E-value=0.00057  Score=55.32  Aligned_cols=63  Identities=22%  Similarity=0.431  Sum_probs=47.7

Q ss_pred             eeEEEEecC---CCcEEEEEeec---CCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE---CC--eeecCCCC
Q 013832           26 IPMRFVWPY---GGRSVFLSGSF---NRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EWRHDEHQ   91 (435)
Q Consensus        26 ~~~~f~w~~---~~~~V~l~Gsf---~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V---Dg--~w~~d~~~   91 (435)
                      +.++|.-++   .|+.++|+|+-   -+|++..+|...   .+.|++.+.||++ .++|||++   ||  .|...++.
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~Nr   76 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNNR   76 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCCE
Confidence            456666654   48999999985   589987788763   4679999999998 99999999   44  37555443

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.49  E-value=0.00018  Score=60.15  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=46.9

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFI  226 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i  226 (435)
                      .++.|+|..  ++.+++.+.++.+|++.|.++++..+||+|.+ ++++|++|..|+.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhh
Confidence            457777744  57789999999999999999999999999964 7999999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.43  E-value=0.0016  Score=53.81  Aligned_cols=65  Identities=29%  Similarity=0.575  Sum_probs=49.4

Q ss_pred             eeeEEEEecC-----CCcEEEEEeecC---CCCCCC-----CCccccCCCCeEEEEEEcCCc-eEEEEEEE---CCe--e
Q 013832           25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DGE--W   85 (435)
Q Consensus        25 ~~~~~f~w~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V---Dg~--w   85 (435)
                      -||++|+-..     .|++++|+|+-.   +|+...     +|..  .....|++.+.||.| ..+|||++   ||.  |
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W   79 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLKAPADGTGTW   79 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence            3899999863     478999999854   899742     6654  345789999999999 99999999   443  7


Q ss_pred             ecCCCC
Q 013832           86 RHDEHQ   91 (435)
Q Consensus        86 ~~d~~~   91 (435)
                      ...++.
T Consensus        80 E~g~Nr   85 (103)
T cd05820          80 EGGSNH   85 (103)
T ss_pred             EeCCCE
Confidence            655554

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.36  E-value=0.0013  Score=53.96  Aligned_cols=57  Identities=19%  Similarity=0.395  Sum_probs=43.9

Q ss_pred             eeeEEEEecC----CCcEEEEEe---ecCCCCCCC-CCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        25 ~~~~~f~w~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      -||++|.-..    .|++|+|+|   ++.+|+... +|.... ...+.|++.+.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4889999742    479999999   577998752 343321 235789999999999 99999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.36  E-value=0.00064  Score=46.11  Aligned_cols=47  Identities=34%  Similarity=0.559  Sum_probs=41.3

Q ss_pred             eEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHH
Q 013832          182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL  229 (435)
Q Consensus       182 vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il  229 (435)
                      +++++++.++.++.+.|.++++..+||++++ ++++|+++..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            4578899999999999999999999999964 7999999999987543

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.36  E-value=0.0013  Score=54.21  Aligned_cols=61  Identities=26%  Similarity=0.485  Sum_probs=41.3

Q ss_pred             EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-Cee--ecCCCCC
Q 013832           31 VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQP   92 (435)
Q Consensus        31 ~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VD-g~w--~~d~~~~   92 (435)
                      +|...|++|.|.++|++|... .+|.+. ...|.|.+.++ +++| .|.|++..+ |.|  +.||-..
T Consensus        27 v~aP~A~~V~l~~~~~~~~~~~~~m~~~-~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~   93 (106)
T cd02855          27 VWAPNARRVSVVGDFNGWDGRRHPMRRR-GDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAF   93 (106)
T ss_pred             EECCCCCEEEEEEECCCCCCcceecEEC-CCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCce
Confidence            366679999999999999653 588875 24799999886 6666 455544444 333  3355443

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.12  E-value=0.0061  Score=64.16  Aligned_cols=134  Identities=12%  Similarity=0.133  Sum_probs=89.5

Q ss_pred             CceEeCCC-CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC---Ccccccccccccc
Q 013832          273 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPILKLPICAIP  348 (435)
Q Consensus       273 ~~v~v~~~-~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~---~~~~~~~~v~~l~  348 (435)
                      +++.+..+ .++.|...+|.+...+..||+-+. +..   .++|++..+++...+.........   ....+..+....+
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~-~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE-DSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEcc-ccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            45555544 899999999999999999998643 333   799999999998777632211100   0001111111111


Q ss_pred             Cccccc-ccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          349 VGTWVP-KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       349 igt~~~-~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      -+.-.+ ...+.+.-...++...+|...+++++.+-+++.+-| +++|++.|+||+.|+++..+
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v-~~~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILV-TKNGILLGIITKKDCLRHTR  695 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEE-ccCCeeEeeeehHHHHHhhc
Confidence            000000 011233345678999999999999999999999965 56899999999999998654

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.11  E-value=0.0047  Score=51.18  Aligned_cols=58  Identities=19%  Similarity=0.436  Sum_probs=43.5

Q ss_pred             ceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++++|.-.+   .|+.|+|+|+-.   +|++.  ++|....  .....|++.+.||++ .++|||++
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            34677776643   489999999854   79964  5776431  135789999999998 79999996

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.02  E-value=0.0025  Score=51.76  Aligned_cols=53  Identities=19%  Similarity=0.357  Sum_probs=41.2

Q ss_pred             eEEEEe--c--CCCcEEEEEeec---CCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           27 PMRFVW--P--YGGRSVFLSGSF---NRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        27 ~~~f~w--~--~~~~~V~l~Gsf---~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +++|.-  +  .+++.++|+|+=   -+|+...+|...  ..+.|++++.||++ .++|||++
T Consensus         2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence            455554  3  245788999984   479987899764  45789999999998 79999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.95  E-value=0.0059  Score=50.20  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=46.7

Q ss_pred             eeeEEEEecC----CCcEEEEEeecC---CCCCCC--CCccc--cCCCCeEEEEEEcCCc-eEEEEEEE---CCe--eec
Q 013832           25 LIPMRFVWPY----GGRSVFLSGSFN---RWSELL--PMSPV--EGCPTVFQIIWSIPPG-YHQYKFCV---DGE--WRH   87 (435)
Q Consensus        25 ~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~L~~g-~~~ykF~V---Dg~--w~~   87 (435)
                      .++++|.-+.    .|++|+|+|+-.   +|+...  .|...  ......|++.++||.| .++|||++   ||.  |..
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~~~WE~   81 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDNTVTWES   81 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEEECCCCCEEEEe
Confidence            4788888742    489999999844   899753  23211  1245689999999999 99999999   343  655


Q ss_pred             CCC
Q 013832           88 DEH   90 (435)
Q Consensus        88 d~~   90 (435)
                      .++
T Consensus        82 g~n   84 (101)
T cd05807          82 GSN   84 (101)
T ss_pred             CCC
Confidence            444

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=96.91  E-value=0.0036  Score=51.65  Aligned_cols=54  Identities=24%  Similarity=0.365  Sum_probs=40.7

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w   85 (435)
                      ++| +|...|++|.|+. |++|.  ..++|++.  .+|+|.+.++ +.+|. .|+|.|||.|
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~~   68 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGPY   68 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCcc
Confidence            455 6766699999999 66664  33688764  4799999985 66665 7999999953

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.0057  Score=64.36  Aligned_cols=136  Identities=11%  Similarity=0.105  Sum_probs=91.2

Q ss_pred             CeEEeCCC-ccHHHHHHHHHHCCCceeeee-eCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDID-LPVKQAFHILYEQGISMAPLW-DFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~-~~v~eA~~~l~~~~i~s~PV~-D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      +++++..+ .++.+.-.+|.+......||+ ++++++++|++..+|+...+....+..+......+  +-.+..+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~~  634 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVAG  634 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccCC
Confidence            45555555 899999999999999989986 55677899999999998877644433222211111  000000000000


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .+.. -+.-.++...++++...++..-++.++.+-+++.+.|.+    +|   +++|+||.+|++++.
T Consensus       635 ~~~~-~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G---~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  635 IPSR-LDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NG---ILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCC-cCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CC---eeEeeeehHHHHHhh
Confidence            0000 000114556778899999999999999999999999983    57   899999999999864

>PRK12568 glycogen branching enzyme; Provisional

Probab=96.83  E-value=0.0024  Score=69.81  Aligned_cols=64  Identities=27%  Similarity=0.540  Sum_probs=47.5

Q ss_pred             eEEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCeee--cCCCCCe
Q 013832           27 PMRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQPF   93 (435)
Q Consensus        27 ~~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V---Dg~w~--~d~~~~~   93 (435)
                      -++| +|...|++|+|+|+||+|... .||.+.  ..|+|++.++ +.+| ..|||.|   ||.+.  .||-...
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~  210 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ  210 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence            3566 566669999999999999865 589764  6899999985 6777 3566666   78664  5665543

>PRK12313 glycogen branching enzyme; Provisional

Probab=96.81  E-value=0.0029  Score=68.99  Aligned_cols=66  Identities=21%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             eEEEE-ecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEE-CCee--ecCCCCCee
Q 013832           27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFI   94 (435)
Q Consensus        27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~V-Dg~w--~~d~~~~~~   94 (435)
                      .++|+ |...|++|+|+|+|++|... .+|.+.  ..|+|+++++ +.+| .|+|++.. ||.|  +.||-....
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~  111 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYF  111 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEE
Confidence            45553 55569999999999999875 588874  5799999998 4455 77777755 5665  445555433

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.79  E-value=0.0063  Score=49.97  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=37.8

Q ss_pred             CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      .|+.++|+|+   .-+|+..  ++|...  ....|++++.||++ .++|||++
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence            4899999999   5689965  578764  35789999999988 89999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.68  E-value=0.017  Score=47.36  Aligned_cols=45  Identities=27%  Similarity=0.510  Sum_probs=37.1

Q ss_pred             CCcEEEEEeec---CCCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE
Q 013832           35 GGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV   81 (435)
Q Consensus        35 ~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykF~V   81 (435)
                      .|++|+|+|+-   .+|++.  ++|...  ....|++.+.+|++  .++|||++
T Consensus        13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816          13 KGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             CCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence            48999999994   589964  588764  46789999999986  69999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>PRK14705 glycogen branching enzyme; Provisional

Probab=96.67  E-value=0.0032  Score=72.40  Aligned_cols=62  Identities=29%  Similarity=0.664  Sum_probs=45.6

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---Cee--ecCCCC
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQ   91 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD---g~w--~~d~~~   91 (435)
                      ++| +|...|++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+   |.|  +.||-.
T Consensus       640 v~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA  709 (1224)
T PRK14705        640 VSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA  709 (1224)
T ss_pred             EEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence            445 566779999999999999865 588764 35799999985 78884 5777774   555  345543

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=96.66  E-value=0.0041  Score=68.19  Aligned_cols=59  Identities=29%  Similarity=0.440  Sum_probs=43.7

Q ss_pred             EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-------cCCceEEEEEEE---CCe--eecCCCCC
Q 013832           31 VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCV---DGE--WRHDEHQP   92 (435)
Q Consensus        31 ~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~g~~~ykF~V---Dg~--w~~d~~~~   92 (435)
                      +|...|++|+|+|+||+|... .+|++.  ..|+|++.++       ++.| ..|||.|   ||.  ++.||-..
T Consensus       120 vWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        120 EWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             EECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            577779999999999999875 589874  4799999986       3445 2566666   354  45676554

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.60  E-value=0.011  Score=47.85  Aligned_cols=47  Identities=23%  Similarity=0.493  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCC--c-eEEEEEEE
Q 013832           34 YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV   81 (435)
Q Consensus        34 ~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~~~ykF~V   81 (435)
                      ..|++++|+|+..   +|++.  ++|...+ ..+.|++.+.+|+  | .++|||++
T Consensus        11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            3589999999965   89854  6887642 3688999999999  7 89999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.57  E-value=0.0077  Score=50.99  Aligned_cols=60  Identities=22%  Similarity=0.426  Sum_probs=43.7

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC---C--CCCCcccc-CCCCeEEEEEE-cCCceEEEEEEECCeeecCC
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDE   89 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~~~ykF~VDg~w~~d~   89 (435)
                      ++| +|...|++|.|+. |++|.   +  .++|.+.+ +..|+|.+.++ +.+|. .|+|.|+|.|.-++
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~   76 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ   76 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence            455 6777799999999 88886   2  24676531 23699999985 67775 79999999765443

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.46  E-value=0.019  Score=46.83  Aligned_cols=54  Identities=20%  Similarity=0.399  Sum_probs=41.8

Q ss_pred             eeEEEEec----CCCcEEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           26 IPMRFVWP----YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        26 ~~~~f~w~----~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      |+++|.-.    ..++.++|+|+-.   +|+..  ++|...  ....|++.+.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence            45666632    3479999999855   89964  567653  45789999999999 99999988

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK14706 glycogen branching enzyme; Provisional

Probab=96.42  E-value=0.0059  Score=66.40  Aligned_cols=63  Identities=33%  Similarity=0.639  Sum_probs=46.0

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEc-CCceEEEEEEECC---ee--ecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~~~ykF~VDg---~w--~~d~~~~~   93 (435)
                      ++| +|...|++|+|+|+||+|... .||.+.  ..|+|++.++- .+| ..|||.|++   .+  +.||-...
T Consensus        40 v~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~  110 (639)
T PRK14706         40 VRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSF  110 (639)
T ss_pred             EEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEE
Confidence            455 566679999999999999875 589875  46999999864 455 468888854   43  56665543

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.34  E-value=0.0082  Score=66.51  Aligned_cols=63  Identities=27%  Similarity=0.556  Sum_probs=45.1

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCc-eEEEEEEEC-Cee--ecCCCC
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQ   91 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VD-g~w--~~d~~~   91 (435)
                      ++|+ |...|++|+|+|+||+|... .+|.+. ...|+|+++++ +++| .|.|++..+ |.|  ..||-.
T Consensus       133 v~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa  202 (726)
T PRK05402        133 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYA  202 (726)
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCce
Confidence            4554 44569999999999999864 589874 25799999985 6677 777777665 454  344444

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.98  E-value=0.06  Score=44.14  Aligned_cols=54  Identities=28%  Similarity=0.535  Sum_probs=39.0

Q ss_pred             EEEEecC-CCcEEEEEeec---CCCCCC--CCCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           28 MRFVWPY-GGRSVFLSGSF---NRWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        28 ~~f~w~~-~~~~V~l~Gsf---~~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +.+.++- .|++++|+|+-   -+|+..  ++|.... .....|++.+.+|++ .++|||+|
T Consensus         4 f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           4 FKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            3344433 48999999984   479755  5775421 223489999999988 79999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.70  E-value=0.15  Score=42.77  Aligned_cols=51  Identities=20%  Similarity=0.389  Sum_probs=38.6

Q ss_pred             EecCCCcEEEEEee---cCCCCCC--CCCcccc-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 013832           31 VWPYGGRSVFLSGS---FNRWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV   81 (435)
Q Consensus        31 ~w~~~~~~V~l~Gs---f~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~~~ykF~V   81 (435)
                      +.-..+++++|+|+   +-+|+..  ++|....     .....|++.+.||++    ..+|||+.
T Consensus        10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            34457899999998   5589965  4676531     134579999999996    79999998

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=95.67  E-value=0.035  Score=44.00  Aligned_cols=61  Identities=23%  Similarity=0.273  Sum_probs=42.9

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEEC-CeeecCCCCCee
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI   94 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VD-g~w~~d~~~~~~   94 (435)
                      ++|. |...|++|.|....  |. .++|.+.  .+|+|+++++..+|. .|+|.|+ +..+.||.....
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~   72 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ   72 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence            3444 66669999999743  54 3789874  579999998643774 4777776 457888877653

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=95.57  E-value=0.024  Score=60.61  Aligned_cols=60  Identities=25%  Similarity=0.337  Sum_probs=47.3

Q ss_pred             EE-EecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECC-eeecCCCCCeee
Q 013832           29 RF-VWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFIS   95 (435)
Q Consensus        29 ~f-~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg-~w~~d~~~~~~~   95 (435)
                      +| +|...|++|.|.+.   +. .++|.+.  .+|+|+++++ +.+| +.|+|.||| ....||......
T Consensus         2 ~FrlwAP~A~~V~L~l~---~~-~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~   64 (542)
T TIGR02402         2 RFRLWAPTAASVKLRLN---GA-LHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP   64 (542)
T ss_pred             EEEEECCCCCEEEEEeC---CC-EEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence            45 57777999999973   33 4799884  5799999996 7788 789999999 678898887643

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.13  E-value=0.04  Score=59.89  Aligned_cols=64  Identities=30%  Similarity=0.560  Sum_probs=45.6

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC---Ce--eecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD---g~--w~~d~~~~~   93 (435)
                      ++| +|...|++|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+   |.  ++.||-.-.
T Consensus        30 ~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~  101 (613)
T TIGR01515        30 TRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFY  101 (613)
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEee
Confidence            344 466669999999999999865 488764 24699999986 45664 5777773   54  466776543

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=94.73  E-value=0.1  Score=41.66  Aligned_cols=63  Identities=22%  Similarity=0.503  Sum_probs=38.1

Q ss_pred             eEEEEecC------CCcEEEEEeecCCCCCC--CCCcccc--CCCCeEEEEEEcCCceEEEEEEE-CC--eeecCC
Q 013832           27 PMRFVWPY------GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWRHDE   89 (435)
Q Consensus        27 ~~~f~w~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~V-Dg--~w~~d~   89 (435)
                      ++++.|..      ++.+|++.+.|++|+..  ++|.++.  ...+.|++++.+|..-|+..|+- ||  .|-.+.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDNN~   78 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDNNN   78 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EESTT
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeCCC
Confidence            45666632      46899999999999965  4676641  12699999999999877888877 54  575443

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PRK05402 glycogen branching enzyme; Provisional

Probab=94.56  E-value=0.067  Score=59.36  Aligned_cols=61  Identities=10%  Similarity=-0.028  Sum_probs=43.0

Q ss_pred             EEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEECCee--ecCCCC
Q 013832           29 RFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGEW--RHDEHQ   91 (435)
Q Consensus        29 ~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg~w--~~d~~~   91 (435)
                      -=+|...|++|+|+|+||+ ....||.+. ...|.|++.+++..| .|+|...-||+|  ..||-.
T Consensus        32 f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         32 VRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             EEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence            3467778999999999997 333589875 357999999997777 544443337854  445433

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.52  E-value=0.068  Score=54.64  Aligned_cols=48  Identities=10%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          363 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       363 ~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      .+.+++++++|.+++..+.+.+. .+||+|+ |+++|+|++.+|+..+..
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence            56789999999999999888765 4889986 999999999999987653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=94.29  E-value=0.45  Score=40.57  Aligned_cols=84  Identities=18%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             eeEEEEec----CCCcEEEEEeecCCCCCC-----CCCccccCCCCeEEEEEEcCCc-eEEEEEEECCe-----------
Q 013832           26 IPMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE-----------   84 (435)
Q Consensus        26 ~~~~f~w~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg~-----------   84 (435)
                      +.|||.|+    .....+.|.|+.|+...+     ..|.+.. ...+|..++.||.+ +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            46899999    345779999999999643     3677773 56899999999999 99999997533           


Q ss_pred             -----eecCCCCCee-eCC---CCCeeeEEEecCC
Q 013832           85 -----WRHDEHQPFI-SSE---YGIVNTVLLATEP  110 (435)
Q Consensus        85 -----w~~d~~~~~~-~d~---~G~~nnvl~v~~~  110 (435)
                           =..||-||.. ...   .|..-+++...+.
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A  115 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA  115 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence                 3578988853 333   4788888887543

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.27  E-value=0.079  Score=52.15  Aligned_cols=95  Identities=14%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccC
Q 013832          278 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG  357 (435)
Q Consensus       278 ~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g  357 (435)
                      .+...-..+...+.+...+.+-+++   ..+   +.+|+++..++.++..                              
T Consensus       290 ~~~~~~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~~~------------------------------  333 (386)
T COG4175         290 TPGDGPRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKAAL------------------------------  333 (386)
T ss_pred             ccccccchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhcccc------------------------------
Confidence            3444555677788887777777774   233   6899999888765400                              


Q ss_pred             CCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       358 ~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                         ..++.++.+++++.+.+..+.+.. ..+||||++|+++|+|++..++.++..
T Consensus       334 ---~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         334 ---IDDVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ---cccccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHhc
Confidence               125667899999999888876654 468899999999999999999987653

>PLN02950 4-alpha-glucanotransferase

Probab=94.01  E-value=0.33  Score=54.94  Aligned_cols=69  Identities=29%  Similarity=0.567  Sum_probs=48.4

Q ss_pred             CCceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCcccc-CCCCeEEEEEEcCCc-eEEEEEEE---CCe---e
Q 013832           22 DTVLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV---DGE---W   85 (435)
Q Consensus        22 ~~~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V---Dg~---w   85 (435)
                      .+..+.++|.-++   -|++|+|+|+-.   +|+..  ++|+... .....|++++.||.| ..+|||++   +|.   |
T Consensus         5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~W   84 (909)
T PLN02950          5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRW   84 (909)
T ss_pred             CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeee
Confidence            3445667776653   489999999865   69865  5786531 123489999999998 89999995   343   6


Q ss_pred             ecCCC
Q 013832           86 RHDEH   90 (435)
Q Consensus        86 ~~d~~   90 (435)
                      ...++
T Consensus        85 E~g~N   89 (909)
T PLN02950         85 EAGKK   89 (909)
T ss_pred             ecCCC
Confidence            55553

>TIGR02104 pulA_typeI pullulanase, type I

Probab=93.43  E-value=0.17  Score=55.06  Aligned_cols=63  Identities=19%  Similarity=0.298  Sum_probs=44.5

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCC-----CCCCccccCCCCeEEEEEE-cCCc-eEEEEEEECCe--eecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVDGE--WRHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g-~~~ykF~VDg~--w~~d~~~~~   93 (435)
                      ++| +|...|++|.|++ |++|..     .++|.+.  ..|+|++.++ +.+| .|.|++..+|.  +..||-...
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~--~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~   93 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG--ENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA   93 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC--CCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence            455 5666799999998 888853     3588773  5799999997 4566 55555555665  478887654

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN02950 4-alpha-glucanotransferase

Probab=92.64  E-value=0.85  Score=51.74  Aligned_cols=71  Identities=20%  Similarity=0.372  Sum_probs=52.4

Q ss_pred             CCceeeEEEEecC----CCcEEEEEee---cCCCCCC--CCCccccCCCCeEEEEEEcCCc--eEEEEEEE---CCe--e
Q 013832           22 DTVLIPMRFVWPY----GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DGE--W   85 (435)
Q Consensus        22 ~~~~~~~~f~w~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykF~V---Dg~--w   85 (435)
                      .+..++++|.-..    .|++|+|+|+   .-+|+..  ++|+..  ....|++.+.+|++  ..+|||++   +|.  |
T Consensus       149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~--~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W  226 (909)
T PLN02950        149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYT--GDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL  226 (909)
T ss_pred             CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccC--CCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence            4456788888532    4899999998   4489965  466653  46889999999988  59999998   443  8


Q ss_pred             ecCCCCCee
Q 013832           86 RHDEHQPFI   94 (435)
Q Consensus        86 ~~d~~~~~~   94 (435)
                      ...++.-..
T Consensus       227 E~g~NR~~~  235 (909)
T PLN02950        227 ELGVNRELS  235 (909)
T ss_pred             eeCCCceee
Confidence            766666543

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=90.92  E-value=0.4  Score=46.03  Aligned_cols=116  Identities=16%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhccc--CCC---ccc-cccccc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC--SSS---LPI-LKLPIC  345 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~--~~~---~~~-~~~~v~  345 (435)
                      +.++.|..  -+.||+++     ..++.|++    .|   +++-+-+..+|++.-+..|-..  +.+   ... ...++.
T Consensus       187 kTivfVTH--DidEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~  252 (309)
T COG1125         187 KTIVFVTH--DIDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVA  252 (309)
T ss_pred             CEEEEEec--CHHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHH
Confidence            34444443  35566654     35788884    46   7999999988886543332110  000   000 001111


Q ss_pred             cccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       346 ~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                      +.+....   .  ....+   +.......+++..+...+.+.+||||++|+++|.+++.+|+..
T Consensus       253 ~~~~~~~---~--~~~~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         253 DAVRRGE---P--ADGEP---LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             Hhhcccc---c--ccCCc---cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            1111000   0  00111   2333445558888899999999999999999999999999763

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=90.70  E-value=1.1  Score=46.45  Aligned_cols=87  Identities=17%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CceeeEEEEecCC-C-------cEEEEEee--cC--CCCCCCCCccccCCCCeEEEEEEcCCc-eEEEEEEEC---C---
Q 013832           23 TVLIPMRFVWPYG-G-------RSVFLSGS--FN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G---   83 (435)
Q Consensus        23 ~~~~~~~f~w~~~-~-------~~V~l~Gs--f~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VD---g---   83 (435)
                      ...+.+||.|+++ +       ++|+|-++  .+  .+....+|++. ....+|..++.||.. +-.|+|+++   .   
T Consensus        36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl-~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~  114 (411)
T PRK10439         36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRI-AGTDVWQWSTELSANWRGSYCFIPTERDDIFS  114 (411)
T ss_pred             CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhcc-CCCceEEEEEEECcccEEEEEEEecccccccc
Confidence            4568999999874 2       35888432  22  13333478887 457899999999999 999999993   1   


Q ss_pred             ---------e------e-------ecCCCCCee-eCCCCCeeeEEEecCC
Q 013832           84 ---------E------W-------RHDEHQPFI-SSEYGIVNTVLLATEP  110 (435)
Q Consensus        84 ---------~------w-------~~d~~~~~~-~d~~G~~nnvl~v~~~  110 (435)
                               .      |       ..||.||.. .+..|+-.|+|.+...
T Consensus       115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a  164 (411)
T PRK10439        115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQA  164 (411)
T ss_pred             ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCC
Confidence                     0      2       368888753 3444554577777543

>PLN02316 synthase/transferase

Probab=89.96  E-value=0.86  Score=52.13  Aligned_cols=66  Identities=17%  Similarity=0.316  Sum_probs=50.5

Q ss_pred             eEEEEecC------CCcEEEEEeecCCCCCC---CCCccccCCCCeEEEEEEcCCceEEEEEEE-CCe--eecCCCCC
Q 013832           27 PMRFVWPY------GGRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQP   92 (435)
Q Consensus        27 ~~~f~w~~------~~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~~~ykF~V-Dg~--w~~d~~~~   92 (435)
                      ++++.|+.      +..+|.|.|-||+|+..   .+|.|.+..++.|++.+.+|+.-|..-|+. ||.  |-++..+-
T Consensus       155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~D  232 (1036)
T PLN02316        155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKD  232 (1036)
T ss_pred             eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCCc
Confidence            46666653      34789999999999865   367777555788999999999999999998 764  66555553

>PLN02960 alpha-amylase

Probab=88.70  E-value=0.39  Score=53.55  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=39.9

Q ss_pred             EEEEecCCCcEEEEEeecCCCCCCC-CCc-----cccCCCCeEEEEEE--cCCc----e---EEEEEEEC
Q 013832           28 MRFVWPYGGRSVFLSGSFNRWSELL-PMS-----PVEGCPTVFQIIWS--IPPG----Y---HQYKFCVD   82 (435)
Q Consensus        28 ~~f~w~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~g----~---~~ykF~VD   82 (435)
                      .-..|..+|+.++|+|+||||.++. +|.     ++  .=|+|.++++  |..|    .   -+|.|..|
T Consensus       131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHD--DFGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             EEEEEcCCceeEEEeecccCCCcccchhhccccccc--ccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            3457999999999999999999874 443     32  3589999985  6666    2   36778775

>PLN02316 synthase/transferase

Probab=88.54  E-value=1.9  Score=49.40  Aligned_cols=68  Identities=15%  Similarity=0.333  Sum_probs=49.1

Q ss_pred             eeEEEEecC------CCcEEEEEeecCCCCCCC----CCcccc-CCCCeEEEEEEcCCceEEEEEEE-CC------eeec
Q 013832           26 IPMRFVWPY------GGRSVFLSGSFNRWSELL----PMSPVE-GCPTVFQIIWSIPPGYHQYKFCV-DG------EWRH   87 (435)
Q Consensus        26 ~~~~f~w~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~L~~g~~~ykF~V-Dg------~w~~   87 (435)
                      -++++.|+.      ++.+|++.|.||+|....    .|.+.+ +.++.|.+++.+|+.-|-.-|+. ||      .|-.
T Consensus       329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~~~~~~~yDN  408 (1036)
T PLN02316        329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGPPGNARNYDN  408 (1036)
T ss_pred             CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCCccccccccc
Confidence            467888862      368999999999999642    233333 24568899999999999999998 66      4555


Q ss_pred             CCCCCe
Q 013832           88 DEHQPF   93 (435)
Q Consensus        88 d~~~~~   93 (435)
                      ...+-+
T Consensus       409 n~~~Dy  414 (1036)
T PLN02316        409 NGRQDF  414 (1036)
T ss_pred             CCCcce
Confidence            554443

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=87.79  E-value=0.75  Score=49.96  Aligned_cols=62  Identities=16%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             cCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC--cEEEEEeHHHHHHHHhhccccc
Q 013832          356 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAH  417 (435)
Q Consensus       356 ~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g--~lvGiis~~DI~~~~~~~~~~~  417 (435)
                      +.+.|.+++..+..+.+..|..+.+....++.+|+||+.+  -|+|.++|+.|..+++.+.-.+
T Consensus       590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig~~  653 (931)
T KOG0476|consen  590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIGPE  653 (931)
T ss_pred             eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcCcc
Confidence            4567889999999999999999988877799999998643  6899999999999998755443

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=87.45  E-value=1  Score=49.77  Aligned_cols=54  Identities=22%  Similarity=0.440  Sum_probs=39.0

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCC----CCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w   85 (435)
                      ++| +|...|++|.|+ -|++|..    .++|.+  +..|+|.+.++ +.+|. .|+|.|+|.|
T Consensus        16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             EEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence            455 456669999986 5665542    357876  35799999996 67776 4999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=84.07  E-value=2.1  Score=49.52  Aligned_cols=63  Identities=10%  Similarity=0.111  Sum_probs=43.7

Q ss_pred             EEE-EecCCCcEEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEE-cCCc-----eEEEEEEECC----eeecCCCCC
Q 013832           28 MRF-VWPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP   92 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~~~ykF~VDg----~w~~d~~~~   92 (435)
                      ++| +|...|++|.|++ ++++|..   .++|.+.  ..|+|++.++ +.+|     -+.|+|.|++    ....||-..
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~--~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG--DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC--CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            445 5777799999998 4556654   4689873  5899999987 4432     3678888865    345666554

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=83.68  E-value=13  Score=40.77  Aligned_cols=57  Identities=12%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             ecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCC-CeEEEeeehHHHHHHHHH
Q 013832          173 YELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSK-ARFVGVLSASDFILILRE  231 (435)
Q Consensus       173 ~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~-~~~vGilT~~D~i~il~~  231 (435)
                      -++|-  .+|..+..+.|..|--+++....++++|++|+.+ .-++|.+..+.+...|..
T Consensus       591 E~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~  648 (931)
T KOG0476|consen  591 EHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR  648 (931)
T ss_pred             eeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence            34453  4677889999999999999888899999999754 357899999999887764

>PRK03705 glycogen debranching enzyme; Provisional

Probab=83.68  E-value=1.7  Score=47.70  Aligned_cols=54  Identities=19%  Similarity=0.417  Sum_probs=39.4

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w   85 (435)
                      +.| +|...|++|.|+. |+++.  ..++|.+.  ..|+|++.++ +.+|. .|+|.|+|.|
T Consensus        21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPAR--SGDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeec--cCCEEEEEECCCCCCC-EEEEEEcccc
Confidence            456 5666799999997 77653  23688763  5799999986 55664 5999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		2e-24
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		8e-16
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		1e-15
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		1e-15
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		1e-15
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		9e-15
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		2e-14
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		3e-13
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		2e-07
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		5e-05

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 124/263 (47%), Gaps = 36/263 (13%)
Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 223
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 224 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
           DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
           L D    ++ N++  +P+I   S +      L+I +   ILK               LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177
Query: 343 PICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLL 398
            I   P   ++ K  E         +AM+R                  ++P+VD+   ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237
Query: 399 DIYCRSDITALAKDKAYAHINLS 421
           DIY + D+  LA +K Y ++++S
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS 260

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G HQYKF VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 68  HDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 222
           +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 223 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
           +DF+ +++      S           I+   + +    R+++    A P   +Y  P  +
Sbjct: 74  ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
           L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  +  +L++
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 181
Query: 343 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 402
           P+  + +GTW           LA                     ++PIV+   +LL++Y 
Sbjct: 182 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 232
Query: 403 RSDITALAKDKAYAHINLS 421
             D+  L +D  Y++++LS
Sbjct: 233 SVDVMHLIQDGDYSNLDLS 251

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+L    P       F  I  +P G HQYKF VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSKL----PXTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 68  HDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 116/259 (44%), Gaps = 21/259 (8%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 222
           +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 223 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
           +DF+ +++      S           I+   + +    R+++    A P   +Y  P  +
Sbjct: 75  ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 127
Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 342
           L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  +  +L++
Sbjct: 128 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 182
Query: 343 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 402
           P+  + +GTW           LA                     ++PIV+   +LL++Y 
Sbjct: 183 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 233
Query: 403 RSDITALAKDKAYAHINLS 421
             D+  L +D  Y++++LS
Sbjct: 234 SVDVMHLIQDGDYSNLDLS 252

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 78.2 bits (191), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 133/280 (47%), Gaps = 33/280 (11%)
Query: 146 EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISM 205
           ++ E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I  
Sbjct: 7   DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVS 65
Query: 206 APLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQI 263
           APLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L   Q+
Sbjct: 66  APLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 264 DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG-- 321
           D+      RPL  A           K+L +    +P+I    QD    + + ++ L+   
Sbjct: 123 DTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYR 170
Query: 322 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXX 381
           ILK V    R        LK+PI  + +      I + N +   M  P            
Sbjct: 171 ILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLT 217
Query: 382 XXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
                S+PI+D+N  L+++Y   D+  L K   Y  ++LS
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 257

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 33/279 (11%)
Query: 147 AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMA 206
           + E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I  A
Sbjct: 1   SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSA 59
Query: 207 PLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQID 264
           PLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L   Q+D
Sbjct: 60  PLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQLD 116
Query: 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG--I 322
           +      RPL  A           K+L +    +P+I    QD    + + ++ L+   I
Sbjct: 117 TASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYRI 164
Query: 323 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXX 382
           LK V    R        LK+PI  + +      I + N +   M  P             
Sbjct: 165 LKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLTQ 211
Query: 383 XXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
               S+PI+D+N  L+++Y   D+  L K   Y  ++LS
Sbjct: 212 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 250

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P    W  GG+ VF+SGSFN WS  +P+         F  I  +P G HQYKF VDG+W 
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWV 67
Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G +N ++   + +F
Sbjct: 68  HDPSEPVVTSQLGTINNLIHVKKSDF 93

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 23 TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
          ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 83 GEWRHDEHQPFISSEYG 99
           E R  +  P  + + G
Sbjct: 61 NELRVSDFLPTATDQMG 77

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 35  GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPGYHQYKFCVDGEWRHDEHQPF 93
           G   V +SG    W + +P++  +G  T F I+   +P G  +YK+ +DGEW H+E +PF
Sbjct: 180 GFSRVEISGLDIGWGQRIPLTLGKG--TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF 237
Query: 94  I--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQI 139
           I  + +    N   +  +P  + G  +   S  + ++  E   +L+Q 
Sbjct: 238 IGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQF 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-60
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	8e-52
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-07
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-51
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	5e-13
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	5e-28
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	1e-26
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	2e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-20
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-09
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-16
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-14
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	4e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	6e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-13
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-05
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	8e-09
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	6e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	8e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-04
1pvm_A	184	Conserved hypothetical protein TA0289; structural	3e-04
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	7e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  199 bits (507), Expect = 2e-60
 Identities = 59/270 (21%), Positives = 124/270 (45%), Gaps = 23/270 (8%)

Query: 153 EADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS 212
           +   + +   +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 213 KARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFP 271
             +F G+L+ +DF+ +++      S      E++   +   +E        ++    A P
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLRE--------VERKIGAIP 116

Query: 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
              +Y  P  +L D    +  +    +P+I    + GS   ++ + +   ILK +    +
Sbjct: 117 PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCK 175

Query: 332 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 391
                  +L++P+  + +GTW           LA       +   + +L +  +S++PIV
Sbjct: 176 E----TAMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIV 222

Query: 392 DDNDSLLDIYCRSDITALAKDKAYAHINLS 421
           +   +LL++Y   D+  L +D  Y++++LS
Sbjct: 223 NSEGTLLNVYESVDVMHLIQDGDYSNLDLS 252

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 35/221 (15%), Positives = 68/221 (30%), Gaps = 42/221 (19%)

Query: 190 PVKQAFHILYEQGISMAPLWDFSK----ARFVGVLSASDFILILRELGNHGSNLTEEELE 245
            +  A   + +      PL D          V VL+      IL+ +  +          
Sbjct: 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYR---ILKFISMNCKET------ 177

Query: 246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 305
                      A L   ++         L  A     + DV + +    ++ VPI++S  
Sbjct: 178 -----------AMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG 226

Query: 306 QDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA 365
                  LL++     ++  +                    + VG  + K    N   + 
Sbjct: 227 T------LLNVYESVDVMHLIQDG-----------DYSNLDLSVGEALLKRP-ANFDGVH 268

Query: 366 MLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
             R +  L    + +  ++V  + +VD+N  L  I   +DI
Sbjct: 269 TCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADI 309

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  176 bits (447), Expect = 8e-52
 Identities = 64/277 (23%), Positives = 128/277 (46%), Gaps = 24/277 (8%)

Query: 145 TEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGIS 204
           T+ ++     + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 205 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQID 264
            APLWD   +RF G+L+ +DFI +++   ++      E ++   +   K+ +  L     
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 265 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324
                         P+  L +   K+L +    +P+I     +     ++ + +   ILK
Sbjct: 121 ------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDE-ETHREIVVSVLTQYRILK 173

Query: 325 CVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ 384
            V    R        LK+PI  + + T            +   + +  +   + +L Q +
Sbjct: 174 FVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGR 220

Query: 385 VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 421
           VSS+PI+D+N  L+++Y   D+  L K   Y  ++LS
Sbjct: 221 VSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS 257

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 42/223 (18%)

Query: 188 DLPVKQAFHILYEQGISMAPLWD----FSKARFVGVLSASDFILILRELGNHGSNLTEEE 243
             P+ +A   + E      PL D      +   V VL+    +  +              
Sbjct: 130 SRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETH------ 183

Query: 244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 303
                         +L   I          +        + DV + +    V++VPII  
Sbjct: 184 --------------FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII-- 227

Query: 304 SSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRP 363
             ++G    L+++     +L  +             L L +               +   
Sbjct: 228 -DENG---YLINVYEAYDVLGLIK------GGIYNDLSLSVGE------ALMRRSDDFEG 271

Query: 364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
           +     +  LS  ++ + +A+V    +VDD   L+ +   SDI
Sbjct: 272 VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDI 314

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  175 bits (444), Expect = 3e-51
 Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 26/290 (8%)

Query: 139 ISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 198
           ++  S        S+   + +    + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct: 4   VAAESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 63

Query: 199 YEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 258
              G+  APLWD  K  FVG+L+ +DFI IL       + +   ELE H I  W+E    
Sbjct: 64  VTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVY-- 120

Query: 259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 318
                    +   +PLV   PN +L D    ++ N++  +P+I   S +      L+I +
Sbjct: 121 --------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN-----TLYILT 167

Query: 319 LSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALN 378
              ILK +  +          +   +  + +GT+           +AM+R +  +  AL 
Sbjct: 168 HKRILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALG 217

Query: 379 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQV 428
           + VQ +VS++P+VD+   ++DIY + D+  LA +K Y ++++S     Q 
Sbjct: 218 IFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH 267

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 68.8 bits (168), Expect = 5e-13
 Identities = 32/226 (14%), Positives = 77/226 (34%), Gaps = 35/226 (15%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
            +V +  +  +  A   L    I   P+ D      + +L+      IL+ L    +   
Sbjct: 127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKR---ILKFLKLFITEFP 183

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
           + E              ++++ ++         +        +       + + V+ +P+
Sbjct: 184 KPE--------------FMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPV 229

Query: 301 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360
           +    + G   +++ I S   ++            +   L + +      T   +     
Sbjct: 230 V---DEKG---RVVDIYSKFDVINLAA------EKTYNNLDVSV------TKALQHRSHY 271

Query: 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
              +       +L A +N LV+A+V  + +VD++D +  I   SDI
Sbjct: 272 FEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  110 bits (275), Expect = 5e-28
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 8/156 (5%)

Query: 23  TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 83  GEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDG 142
            E R  +  P  + + G           N++          +      EA       SD 
Sbjct: 61  NELRVSDFLPTATDQMGNFV--------NYIEVRQPEKNPTNEKIRSKEADSMRPPTSDR 112

Query: 143 SLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPE 178
           S           D      R    LS     E   +
Sbjct: 113 SSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTD 148

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score =  101 bits (254), Expect = 1e-26
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 16  EPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYH 75
           E          P  F W  GG+ V+LSGSFN WS+L    P+      F  I  +P G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWSKL----PMTRSQNNFVAILDLPEGEH 56

Query: 76  QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 112
           QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  104 bits (259), Expect = 2e-25
 Identities = 35/176 (19%), Positives = 58/176 (32%), Gaps = 28/176 (15%)

Query: 1   MNTGQMFNPGMDAAREPASVPDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGC 60
             +       +  A                +   G   V +SG    W + +P++  +G 
Sbjct: 146 KRSCFPKLDAIRNATIDILTGLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGKG- 204

Query: 61  PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISS-EYGIVNTVLLATEPNFMHGINQG 119
              + +   +P G  +YK+ +DGEW H+E +PFI   + G  N                 
Sbjct: 205 TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA-------------- 250

Query: 120 MPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYEL 175
                   VD    +RL    D  L E             R ++  FL T +  E+
Sbjct: 251 KVVDDPTSVDGTTRERLSS-EDPELLE-----------EERSKLIQFLETCSEAEV 294

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 88.3 bits (219), Expect = 7e-20
 Identities = 30/257 (11%), Positives = 78/257 (30%), Gaps = 39/257 (15%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238
           + K+V +     +++A   + E      P+ +    + VG++++ D +  +     +   
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 239 LTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 298
             + E                 R+I          ++    N ++ +     L   V   
Sbjct: 71  REKHERNFLAAINEPV------REIME------ENVITLKENADIDEAIETFLTKNVGGA 118

Query: 299 PIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE 358
           PI+   + +    QL+ + +   +++ +                             I +
Sbjct: 119 PIV---NDEN---QLISLITERDVIRALLDKIDE--------------------NEVIDD 152

Query: 359 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 418
              R + +  P   L      +V+     +P+V +   L+ I   +D   L       + 
Sbjct: 153 YITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAFNH 211

Query: 419 NLSEMTIHQVTIVSSDI 435
             +        +   +I
Sbjct: 212 MQTGNVREITNVRMEEI 228

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 44/233 (18%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238
              V+ L  +  + +A      + +  AP+ +  + + + +++  D I            
Sbjct: 91  EENVITLKENADIDEAIETFLTKNVGGAPIVN-DENQLISLITERDVI----------RA 139

Query: 239 LTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 298
           L ++  E   I  +                   R ++ A P + LKDVAR ++ N    +
Sbjct: 140 LLDKIDENEVIDDYIT-----------------RDVIVATPGERLKDVARTMVRNGFRRL 182

Query: 299 PIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE 358
           P++     +G   +L+ I + +  +K +       +         I  + +   +     
Sbjct: 183 PVV----SEG---RLVGIITSTDFIKLL-GSDWAFNHMQTGNVREITNVRMEEIM----- 229

Query: 359 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALA 410
             +R +   +    L     ++V   + ++P+VD+N  +  I    D+    A
Sbjct: 230 --KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYFA 280

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 338 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 397
             LK+PI  + + T            +   + +  +   + +L Q +VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 398 LDIYCRSDITALAKDKAYAHINLS 421
           +++Y   D+  L K   Y  ++LS
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSLS 78

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 258 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 317
           +L   I          +        + DV + +    V++VPII    ++G    L+++ 
Sbjct: 5   FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPII---DENG---YLINVY 58

Query: 318 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAAL 377
               +L  +     +   SL + +                  +   +     +  LS  +
Sbjct: 59  EAYDVLGLIKGGIYN-DLSLSVGE-----------ALMRRSDDFEGVYTCTKNDKLSTIM 106

Query: 378 NLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
           + + +A+V    +VDD   L+ +   SDI
Sbjct: 107 DNIRKARVHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 241
           + +  +  PV     +L +  +S  P+ D      + V  A D + +++    +  +L+ 
Sbjct: 21  MKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKGGIYNDLSLSV 79

Query: 242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 301
            E        ++                    +     ND L  +   I    V    ++
Sbjct: 80  GEALMRRSDDFE-------------------GVYTCTKNDKLSTIMDNIRKARVHRFFVV 120

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 48/229 (20%)

Query: 179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 238
                 L  +  +  AF  + E GI    + +    +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCS 83

Query: 239 LTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVAT 297
             +   + T  I  +                      V      +       ++     +
Sbjct: 84  QGDLYHISTTPIIDYMT-----------------PNPVTVYNTSDEFTAINIMVTRNFGS 126

Query: 298 VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG 357
           +P++  +       + + I +    L                        PV  ++    
Sbjct: 127 LPVVDIND------KPVGIVTEREFLLLYKDLDEI--------------FPVKVFM---- 162

Query: 358 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
                 +  +     L  A+ L+++     +P++DD++ ++ I    + 
Sbjct: 163 ---STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA 208

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 28/274 (10%), Positives = 76/274 (27%), Gaps = 56/274 (20%)

Query: 151 ISEADLQVSRHRVSVFLSTHTAYELLPE-------SGKVVALDIDLPVKQAFHILYEQGI 203
           ++  DL  +         +      +         +   V +        A +I+  +  
Sbjct: 65  LTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNF 124

Query: 204 SMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQI 263
              P+ D    + VG+++  +    L    +       +   +                 
Sbjct: 125 GSLPVVD-INDKPVGIVTERE---FLLLYKDLDEIFPVKVFMS----------------- 163

Query: 264 DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL 323
                     +        L    + +L      +P+I     D    +++ I ++   +
Sbjct: 164 --------TKVQTIYKEVRLDQAVKLMLRRGFRRLPVI---DDDN---KVVGIVTVVNAI 209

Query: 324 KCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQA 383
           K + +                    V   +          L  +   AS++ A   ++  
Sbjct: 210 KQLAKAVDKLDPDYFY------GKVVKDVM-------VTNLVTIDELASVNRAAAEMIVK 256

Query: 384 QVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYA 416
           ++ S+ I++ ++++  I    D+  AL       
Sbjct: 257 RIGSLLILNKDNTIRGIITERDLLIALHHILVME 290

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 24/163 (14%), Positives = 53/163 (32%), Gaps = 18/163 (11%)

Query: 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
           +        D L    +KI    +  + + +         ++  + +   +L  V  Y +
Sbjct: 28  KNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCK 79

Query: 332 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 391
              S        I   P+  ++             +  ++    A+N++V     S+P+V
Sbjct: 80  --DSCSQGDLYHISTTPIIDYM-------TPNPVTVYNTSDEFTAINIMVTRNFGSLPVV 130

Query: 392 DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVSSD 434
           D ND  + I    +   L KD       +      +V  +  +
Sbjct: 131 DINDKPVGIVTEREFLLLYKDL-DEIFPVKVFMSTKVQTIYKE 172

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 24 VLIPMRFVWPYGGRSVFLSGSFNRWSE-LLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++     WP   ++++L G F       + +  +E       +   + PG + Y F +D
Sbjct: 18 YIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEYGYGFQID 74

Query: 83 GEWR 86
           ++ 
Sbjct: 75 NDFE 78

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
           KV  + I   ++ A  +L + G S  P+ D    +  G++S +    IL  +      + 
Sbjct: 26  KVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAM---ILDGILGL-ERIE 80

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
            E LE   +      +  + + I                 D+        + +    +  
Sbjct: 81  FERLEEMKV------EQVMKQDI-----------PVLKLEDSFAKALEMTIDHPF--ICA 121

Query: 301 IHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
           +   ++DG       I +   ILK + +  R
Sbjct: 122 V---NEDG---YFEGILTRRAILKLLNKKVR 146

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFIL 227
           + +T  + +     +  +     V  A  +L E+ ++  P+ D      VGV+S  D + 
Sbjct: 2   TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID-DNWTLVGVVSDYDLLA 60

Query: 228 ILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLVYAGPNDNLKDV 286
           +    G   ++         T   + E +  +++      G       +    + NL+D 
Sbjct: 61  LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDA 120

Query: 287 ARKILHNEVATVPII 301
           AR +L  +   +P++
Sbjct: 121 ARLLLETKFRRLPVV 135

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 15/154 (9%)

Query: 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
           + L    P+ ++ D    ++  +V  +P+I     +     L+ + S   +L       R
Sbjct: 14  QNLHVVKPSTSVDDALELLVEKKVTGLPVI---DDNW---TLVGVVSDYDLLALDSISGR 67

Query: 332 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA--M------LRPSASLSAALNLLVQA 383
             + +     +             I +   + +   M      +R S +L  A  LL++ 
Sbjct: 68  SQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLET 127

Query: 384 QVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYA 416
           +   +P+VD +  L+ I  R ++  A  + K  A
Sbjct: 128 KFRRLPVVDADGKLIGILTRGNVVRAALQIKRNA 161

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 58/253 (22%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
            V  +  +  +K+A  ++ E       + D SK + VG+L+  D I            + 
Sbjct: 69  DVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFAKSEKYKGVE 127

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
            E                             R +        LK   + +L +    +P+
Sbjct: 128 IEPYYQ-------------------------RYVSIVWEGTPLKAALKALLLSNSMALPV 162

Query: 301 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 360
           +     +G      +   L GI+       R       +    + A     W+ +     
Sbjct: 163 V---DSEG------N---LVGIVDET-DLLRDSEIVRIMKSTELAASSEEEWILESHPTL 209

Query: 361 R------------------RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 402
                              R + +  P  ++      + +  +  +P++     L+ +  
Sbjct: 210 LFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 403 RSDIT-ALAKDKA 414
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 24/128 (18%)

Query: 174 ELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG 233
             L  + KV  +     +  A  +L + G S  P+ D +  +  G++S +    ++  + 
Sbjct: 15  PFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD-TSYKLHGLISMTM---MMDAIL 70

Query: 234 NHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN 293
                +  E LET  +      +  +N           R +     +D+L      I+++
Sbjct: 71  GL-ERIEFERLETMKV------EEVMN-----------RNIPRLRLDDSLMKAVGLIVNH 112

Query: 294 EVATVPII 301
               V + 
Sbjct: 113 PF--VCVE 118

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 419
             +  +    +L+AA   + +  + ++PI  D+D L  +    DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 420 LSEMTIHQVTIVSSD 434
             E+    +  V ++
Sbjct: 76  AGELARDSIYYVDAN 90

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 29/120 (24%)

Query: 182 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 241
                +      A   L   G + AP+ D    R++G++  S  +   +        L E
Sbjct: 15  YPVFTLGGSTADAARRLAASGCACAPVLD--GERYLGMVHLSRLLEGRKGWPTVKEKLGE 72

Query: 242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 301
                                           +    P + L D    +   + + VP+ 
Sbjct: 73  ---------------------------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLA 105

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 24/121 (19%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
           KV  + +   ++ A  +L + G +  P+ D    R  G++  +    I+  +      + 
Sbjct: 25  KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNM---IMNSIFGL-ERIE 79

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
            E+L+  T+      +  +              +     ND +      +++N    V +
Sbjct: 80  FEKLDQITV------EEVML-----------TDIPRLHINDPIMKGFGMVINNGF--VCV 120

Query: 301 I 301
            
Sbjct: 121 E 121

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINL 420
           + +   +    +  A   +++ ++SS+P++DD + ++ I   +DI   L +DK      +
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTI 75

Query: 421 SE-MTIHQVTI 430
            + MT   +TI
Sbjct: 76  GDVMTKDVITI 86

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 361 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHIN 419
            + L  ++PS S+  A  L+++  V S+ +++D+ +++  + +SDI   +        I 
Sbjct: 14  TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP 73

Query: 420 LSE-MTIHQVTI 430
           +   MT + +T 
Sbjct: 74  VERIMTRNLITA 85

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 7/72 (9%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 419
                +  + ++  A+ ++ +  +  + + DDN + + +     I    + ++K    + 
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 420 LSE-MTIHQVTI 430
           +   M      +
Sbjct: 77  IRLVMRKPIPKV 88

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 240
           K   ++ D P+++    + E  ++          + VG++      L+     +    + 
Sbjct: 25  KPTVVEEDTPIEEIVDRILEDPVTRTVYVA-RDNKLVGMIPVMH--LLKVSGFHFFGFIP 81

Query: 241 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 300
           +EEL   ++       A    +I           VY   +  L++  + ++ N +  +P+
Sbjct: 82  KEELIRSSMKRLIAKNA---SEIMLD-------PVYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 301 I 301
           +
Sbjct: 132 V 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.96
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.95
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.9
3ddj_A	296	CBS domain-containing protein; structural genomics	99.9
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.88
3ddj_A	296	CBS domain-containing protein; structural genomics	99.88
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.87
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.86
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.85
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.85
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.85
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.82
4esy_A	170	CBS domain containing membrane protein; structural	99.75
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.71
4esy_A	170	CBS domain containing membrane protein; structural	99.71
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.68
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.68
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.68
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.67
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.66
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.66
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.66
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.65
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.65
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.65
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.64
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.64
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.64
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.63
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.63
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.63
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.62
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.62
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.62
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.62
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.61
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.61
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.61
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.61
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.6
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.6
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.6
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.6
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.6
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.6
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.59
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.59
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.59
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.59
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.59
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.58
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.58
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.58
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.57
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.57
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.57
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.56
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.56
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.56
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.56
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.56
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.55
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.55
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.55
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.55
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.54
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.54
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.54
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.54
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.54
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.53
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.53
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.53
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.52
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.51
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.51
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.51
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.51
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.51
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.5
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.5
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.49
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.49
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.49
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.49
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.49
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.49
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.48
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.48
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.48
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.46
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.43
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.43
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.41
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.37
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.31
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.29
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.28
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.26
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.25
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.23
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.22
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.18
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.16
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.16
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.16
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.13
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.12
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.12
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.11
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.1
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.97
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.94
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.9
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.86
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.85
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.83
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.77
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.75
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.74
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.73
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.7
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.66
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.41
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.41
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.24
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	98.02
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	97.87
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.3
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	96.97
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	96.82
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.77
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	96.19
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	95.96
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.82
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.63
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.33
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.04
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	94.95
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	94.89
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	94.83
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	94.71
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	94.71
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	94.13
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	94.1
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	92.92
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	92.18
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	91.11
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	90.85
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	90.71
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	90.38
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	90.22
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.93
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	89.89
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	89.87
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	89.11
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	87.72
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	83.41

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=1.2e-31  Score=264.18  Aligned_cols=253  Identities=24%  Similarity=0.417  Sum_probs=203.8

Q ss_pred             HHHHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHh
Q 013832          153 EADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILREL  232 (435)
Q Consensus       153 ~~~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~  232 (435)
                      +.+.....+++.+||+.++|||+||.+.++++++.++|+.+|+++|.+++++++||||++.++++|++|..||+.++.++
T Consensus        13 ~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~   92 (323)
T 3t4n_C           13 SIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYY   92 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHH
Confidence            35555678999999999999999999999999999999999999999999999999998767999999999999988766


Q ss_pred             ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832          233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  312 (435)
Q Consensus       233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~  312 (435)
                      +..+..  .+.++.+....+++.....        ..|+++++++.+++++.+|++.|.+++++++||++.+...+ ..+
T Consensus        93 ~~~~~~--~~~l~~~~~~~v~~i~~~~--------~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~~  161 (323)
T 3t4n_C           93 FSNPDK--FELVDKLQLDGLKDIERAL--------GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-REI  161 (323)
T ss_dssp             HHCGGG--GGGGGGCBHHHHHHHHHHT--------TC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CEE
T ss_pred             HcCcch--hHHHHHHHHHHHHHHHHHh--------CCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-ccc
Confidence            543221  2345556566677665432        13678999999999999999999999999999998532222 113


Q ss_pred             EEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q 013832          313 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD  392 (435)
Q Consensus       313 lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD  392 (435)
                      ++|++|++||++++..+...    ......++.+++++         |.++++++.+++++.+|+++|.+++++++||||
T Consensus       162 l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd  228 (323)
T 3t4n_C          162 VVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID  228 (323)
T ss_dssp             EEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999998876533    22344566666432         235889999999999999999999999999999


Q ss_pred             CCCcEEEEEeHHHHHHHHhhcccccCCCCCccHHHHHhhh
Q 013832          393 DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIVS  432 (435)
Q Consensus       393 ~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~~~  432 (435)
                      ++|+++|+||++||++++....+..+   +.+|.+++..+
T Consensus       229 ~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~~  265 (323)
T 3t4n_C          229 ENGYLINVYEAYDVLGLIKGGIYNDL---SLSVGEALMRR  265 (323)
T ss_dssp             TTCBEEEEEETTHHHHHHHTTHHHHT---TSBHHHHGGGS
T ss_pred             CCCeEEEEEeHHHHHHHHhhchhhhc---cCCHHHHHhhc
Confidence            99999999999999999988777666   47899988753

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.96  E-value=1.1e-27  Score=236.67  Aligned_cols=245  Identities=31%  Similarity=0.576  Sum_probs=194.7

Q ss_pred             HHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC
Q 013832          157 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG  236 (435)
Q Consensus       157 e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~  236 (435)
                      +.+++.+..||+..+++|+|+.+.++++++.+.|+.+|+++|.+++++++||+|.+.++++|++|..|++..+.......
T Consensus        22 ~~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~  101 (330)
T 2v8q_E           22 ESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA  101 (330)
T ss_dssp             -CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhcc
Confidence            34567899999999999999999999999999999999999999999999999976579999999999998775433110


Q ss_pred             CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEe
Q 013832          237 SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI  316 (435)
Q Consensus       237 ~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGi  316 (435)
                       .....+++...++.|.+....          +|.++++++.+++++.+|++.|.+++++++||++.  +.|   +++|+
T Consensus       102 -~~~~~~l~~~~~~~~~~~~~~----------im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Gi  165 (330)
T 2v8q_E          102 -LVQIYELEEHKIETWREVYLQ----------DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYI  165 (330)
T ss_dssp             -TTTCCCGGGCBHHHHHHHHSS----------SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEE
T ss_pred             -ccchhHHhhccHHHHHHHHhh----------cccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEEE
Confidence             011123445556666554332          47889999999999999999999999999999962  145   79999


Q ss_pred             eeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Q 013832          317 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS  396 (435)
Q Consensus       317 iT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~  396 (435)
                      +|.+||++++.......+. ..++..++.++.+++.         ++++++.+++++.+|+++|.+++++++||+|++|+
T Consensus       166 vt~~dl~~~~~~~~~~~~~-~~~~~~~v~~~~v~~~---------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~  235 (330)
T 2v8q_E          166 LTHKRILKFLKLFITEFPK-PEFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR  235 (330)
T ss_dssp             ECHHHHHHHHHHHSCSSSC-CGGGGSBHHHHTCSBC---------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSB
T ss_pred             EcHHHHHHHHHHHhhccCc-hhhhcCCHHHhcccCc---------CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCc
Confidence            9999999998765432211 1234455666544332         37889999999999999999999999999998999


Q ss_pred             EEEEEeHHHHHHHHhhcccccCCCCCccHHHHHh
Q 013832          397 LLDIYCRSDITALAKDKAYAHINLSEMTIHQVTI  430 (435)
Q Consensus       397 lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~  430 (435)
                      ++|+||++||++....+.|..+   +.+|.+++.
T Consensus       236 l~Giit~~dl~~~~~~~~~~~~---~~~v~~~~~  266 (330)
T 2v8q_E          236 VVDIYSKFDVINLAAEKTYNNL---DVSVTKALQ  266 (330)
T ss_dssp             EEEEEEGGGTGGGGGSSCCCCC---SSBHHHHGG
T ss_pred             EEEEEEHHHHHHHHhccccccc---cCcHHHHHh
Confidence            9999999999988776656554   478888875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.95  E-value=2.2e-26  Score=227.51  Aligned_cols=250  Identities=20%  Similarity=0.420  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhc
Q 013832          154 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG  233 (435)
Q Consensus       154 ~~~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~  233 (435)
                      .+.......+.+||...+|+|+|+.+.++++++.++|+.+|+++|.+++++++||+|++.++++|+||..|++..+...+
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            44555778899999999999999999999999999999999999999999999999986689999999999998776543


Q ss_pred             cCCCCC-ChhhhhhccHHHHHHHHHhhcccccCCCccCCCCc--eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCC-C
Q 013832          234 NHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPL--VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG-S  309 (435)
Q Consensus       234 ~~~~~l-~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~--v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g-~  309 (435)
                      ....+. ..+.++...++.+++....+          |.+++  +++.+++++.+|++.|.+++++++||++.+  .+ .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~i----------m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~~~  153 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERKI----------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GETG  153 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHHH----------TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TTTT
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHhh----------ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CCcC
Confidence            210000 11234455666676655433          55566  899999999999999999999999999742  12 0


Q ss_pred             CCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEE
Q 013832          310 FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIP  389 (435)
Q Consensus       310 ~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lP  389 (435)
                      ...++|++|.+||++++......    ......++.+++.         .|.++++++.+++++.+|+++|.+++++++|
T Consensus       154 ~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l~~---------~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~  220 (334)
T 2qrd_G          154 SEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQMTI---------GTWSNLATASMETKVYDVIKMLAEKNISAVP  220 (334)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGSSC---------SBCSSCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred             ccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHhCC---------cccCCceEECCCCcHHHHHHHHHHcCCcEEE
Confidence            01299999999999998754321    1122344544321         2345888999999999999999999999999


Q ss_pred             EEcCCCcEEEEEeHHHHHHHHhhcccccCCCCCccHHHHHhh
Q 013832          390 IVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVTIV  431 (435)
Q Consensus       390 VVD~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~~  431 (435)
                      |+|++|+++|+||++||+..+....+..+   +.+|.+++..
T Consensus       221 Vvd~~~~~~Giit~~dl~~~~~~~~~~~~---~~~v~~~m~~  259 (334)
T 2qrd_G          221 IVNSEGTLLNVYESVDVMHLIQDGDYSNL---DLSVGEALLK  259 (334)
T ss_dssp             EECTTCBEEEEEETHHHHHHHTTSCGGGG---GSBHHHHHTT
T ss_pred             EEcCCCcEEEEEEHHHHHHHhhccccccc---cCcHHHHHhc
Confidence            99998999999999999998877655444   3677777753

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=4.8e-24  Score=173.33  Aligned_cols=88  Identities=43%  Similarity=0.871  Sum_probs=78.8

Q ss_pred             CCCceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCC
Q 013832           21 PDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI  100 (435)
Q Consensus        21 ~~~~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~  100 (435)
                      +.+..+|++|+|..+|++|+|+|+||+|+ .++|.+.   .|.|+++++|++|.|+|||+|||+|++||.+|++.|+.|+
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            34567999999998899999999999999 6899884   4899999999999999999999999999999999999999


Q ss_pred             eeeEEEecCCCC
Q 013832          101 VNTVLLATEPNF  112 (435)
Q Consensus       101 ~nnvl~v~~~~~  112 (435)
                      .||+|.|.+.+.
T Consensus        82 ~Nnvi~V~~~d~   93 (96)
T 1z0n_A           82 VNNIIQVKKTDF   93 (96)
T ss_dssp             EEEEEEECSCTT
T ss_pred             EeEEEEEcCCCc
Confidence            999999987654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=3.8e-23  Score=198.31  Aligned_cols=202  Identities=13%  Similarity=0.261  Sum_probs=153.2

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.+.++.. +++++++++|+.+|+++|.+++++++||+|+++++++|++|..|++..+......      ..+......
T Consensus         4 ~v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~------~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY------NLIREKHER   76 (280)
T ss_dssp             BGGGTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGG------HHHHTTSTT
T ss_pred             hHHHHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchh------hhhhhcccc
Confidence            455666544 8999999999999999999999999999997568999999999998765321110      000000000


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  330 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~  330 (435)
                      .+...   .   ....+.+|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+|+++++....
T Consensus        77 ~~~~~---~---~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~  144 (280)
T 3kh5_A           77 NFLAA---I---NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLDKI  144 (280)
T ss_dssp             CHHHH---T---TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGGGS
T ss_pred             chhHH---h---hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhhcC
Confidence            00000   0   00112257789999999999999999999999999999963   45   7999999999998876542


Q ss_pred             cccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       331 ~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                      ..        ..++.++            |.++++++++++++.+|+++|.+++++++||+ ++|+++|+||.+||++.+
T Consensus       145 ~~--------~~~v~~~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          145 DE--------NEVIDDY------------ITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLL  203 (280)
T ss_dssp             CT--------TCBSGGG------------CBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHH
T ss_pred             CC--------CCCHHHH------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHH
Confidence            11        1234433            33578899999999999999999999999999 579999999999999887


Q ss_pred             hh
Q 013832          411 KD  412 (435)
Q Consensus       411 ~~  412 (435)
                      ..
T Consensus       204 ~~  205 (280)
T 3kh5_A          204 GS  205 (280)
T ss_dssp             TS
T ss_pred             hh
Confidence            53

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.90  E-value=8.2e-24  Score=200.47  Aligned_cols=90  Identities=24%  Similarity=0.610  Sum_probs=81.6

Q ss_pred             ceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCeee
Q 013832           24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT  103 (435)
Q Consensus        24 ~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nn  103 (435)
                      .++|++|+|+++|++|+|+|+|++|++.++|+|.++++|.|++++.|+||.|+|||+|||+|++|+++|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            36999999999999999999999999888999865668999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCC
Q 013832          104 VLLATEPNFM  113 (435)
Q Consensus       104 vl~v~~~~~~  113 (435)
                      +|.|.+++..
T Consensus        82 vi~V~~~~~~   91 (252)
T 2qlv_B           82 YIEVRQPEKN   91 (252)
T ss_dssp             EEEECC----
T ss_pred             eeeccCcccc
Confidence            9999876543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.90  E-value=2.1e-23  Score=202.67  Aligned_cols=195  Identities=14%  Similarity=0.236  Sum_probs=156.7

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.++|..  ++++++++.++.+|++.|.+++++.+||+|++ ++++|++|..|++..+.....           ..+
T Consensus        92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~lvGivt~~dl~~~~~~~~~-----------~~~  157 (296)
T 3ddj_A           92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKDLDE-----------IFP  157 (296)
T ss_dssp             TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGGSCC-----------CCB
T ss_pred             cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHhhhcccc-----------ccc
Confidence            5678888854  67899999999999999999999999999864 799999999998765432111           012


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +   .+              +|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+||++.+..
T Consensus       158 v---~~--------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  214 (296)
T 3ddj_A          158 V---KV--------------FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAK  214 (296)
T ss_dssp             H---HH--------------HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHH
T ss_pred             H---HH--------------hhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHH
Confidence            2   11              26678899999999999999999999999999962   45   79999999999999886


Q ss_pred             hhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          329 YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       329 ~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      .+..... ......++.++            |.++++++.++++|.+|+++|.+++++++||||++|+++|+||++||++
T Consensus       215 ~~~~~~~-~~~~~~~v~~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~  281 (296)
T 3ddj_A          215 AVDKLDP-DYFYGKVVKDV------------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLI  281 (296)
T ss_dssp             HHHHTCT-HHHHTCBHHHH------------SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             HHhhcCh-hhhcCcCHHHH------------hCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHH
Confidence            5433210 01112333333            3458889999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 013832          409 LAKDK  413 (435)
Q Consensus       409 ~~~~~  413 (435)
                      .+...
T Consensus       282 ~l~~~  286 (296)
T 3ddj_A          282 ALHHI  286 (296)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.88  E-value=3.2e-22  Score=191.81  Aligned_cols=193  Identities=19%  Similarity=0.370  Sum_probs=152.1

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.++|..  ++++++.+.++.+|++.|.++++.++||+|++ ++++|++|..|++..+.......          .+
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~----------~~  149 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-NQLISLITERDVIRALLDKIDEN----------EV  149 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHGGGSCTT----------CB
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-CEEEEEEEHHHHHHHHhhcCCCC----------CC
Confidence            4688888864  78899999999999999999999999999964 89999999999987654321100          01


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +                 +.+|.++++++.+++++.+|++.|.+++++++||++    +|   +++|++|.+||++.+..
T Consensus       150 v-----------------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~Givt~~dl~~~~~~  205 (280)
T 3kh5_A          150 I-----------------DDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----EG---RLVGIITSTDFIKLLGS  205 (280)
T ss_dssp             S-----------------GGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHTS
T ss_pred             H-----------------HHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHhh
Confidence            1                 113678889999999999999999999999999994    35   79999999999998864


Q ss_pred             hhcc--cC-C-CccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Q 013832          329 YFRH--CS-S-SLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS  404 (435)
Q Consensus       329 ~~~~--~~-~-~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~  404 (435)
                      ....  .. . .......++.++            |.++++++++++++.+|+++|.+++++++||||++|+++|+||++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~v~~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~  273 (280)
T 3kh5_A          206 DWAFNHMQTGNVREITNVRMEEI------------MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEK  273 (280)
T ss_dssp             HHHHHHHHSCCTHHHHHCBHHHH------------SBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHH
T ss_pred             hhhhhhhcccchhhhhCCcHHHH------------hcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHH
Confidence            3210  00 0 000012333333            346889999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 013832          405 DITALA  410 (435)
Q Consensus       405 DI~~~~  410 (435)
                      ||++.+
T Consensus       274 dil~~l  279 (280)
T 3kh5_A          274 DVLKYF  279 (280)
T ss_dssp             HHGGGG
T ss_pred             HHHHhh
Confidence            998754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.88  E-value=1.3e-22  Score=196.93  Aligned_cols=195  Identities=11%  Similarity=0.139  Sum_probs=152.4

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|..  +++++++++|+.+|+++|.+++++++||+|   ++++|++|..||+..+......         ..+ 
T Consensus        19 ~~~V~dim~~--~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~---------~~~-   83 (296)
T 3ddj_A           19 GMNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD---------SCS-   83 (296)
T ss_dssp             CSSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC------------CC-
T ss_pred             ccCHHHhccC--CCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc---------ccc-
Confidence            4677888854  789999999999999999999999999998   7899999999998765321110         000 


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      ...+.... .     ...+.+|.++++++.+++++.+|++.|.+++++++||++.   ++   +++|++|.+|+++++..
T Consensus        84 ~~~~~~~~-~-----~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~~~  151 (296)
T 3ddj_A           84 QGDLYHIS-T-----TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLYKD  151 (296)
T ss_dssp             HHHHHHHH-T-----SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGGGG
T ss_pred             chhhHHHh-c-----ccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhhhc
Confidence            11111100 0     0112257788999999999999999999999999999963   35   79999999999876543


Q ss_pred             hhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          329 YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       329 ~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ..         ...++.+++            .++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||+.
T Consensus       152 ~~---------~~~~v~~~m------------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~  210 (296)
T 3ddj_A          152 LD---------EIFPVKVFM------------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIK  210 (296)
T ss_dssp             SC---------CCCBHHHHS------------BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             cc---------ccccHHHhh------------cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHH
Confidence            21         123444442            357889999999999999999999999999999999999999999998


Q ss_pred             HHh
Q 013832          409 LAK  411 (435)
Q Consensus       409 ~~~  411 (435)
                      .+.
T Consensus       211 ~~~  213 (296)
T 3ddj_A          211 QLA  213 (296)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.87  E-value=3.6e-21  Score=189.12  Aligned_cols=196  Identities=17%  Similarity=0.157  Sum_probs=149.7

Q ss_pred             CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCC----eEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHH
Q 013832          179 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKA----RFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKE  254 (435)
Q Consensus       179 s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~----~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e  254 (435)
                      +..+++++++.++.+|++.|.+++++.+||+|...+    +++|++|..|++..+......      ..+...++   ++
T Consensus       121 ~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------~~~~~~~v---~~  191 (323)
T 3t4n_C          121 QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------THFLKIPI---GD  191 (323)
T ss_dssp             ---CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------GGGCCSBG---GG
T ss_pred             CCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------hhhhhCcH---HH
Confidence            346789999999999999999999999999997532    399999999999877643221      00111111   11


Q ss_pred             HHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccC
Q 013832          255 GKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS  334 (435)
Q Consensus       255 ~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~  334 (435)
                      .           +..|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+||++++......  
T Consensus       192 ~-----------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~---~~---~~~Giit~~dl~~~~~~~~~~--  252 (323)
T 3t4n_C          192 L-----------NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIYN--  252 (323)
T ss_dssp             T-----------TCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEETTHHHHHHHTTHHH--
T ss_pred             c-----------CCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEeHHHHHHHHhhchhh--
Confidence            1           1126788999999999999999999999999999963   45   799999999999988754211  


Q ss_pred             CCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          335 SSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       335 ~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                          .+..++.+++....      ....+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+..
T Consensus       253 ----~~~~~v~~~m~~~~------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          253 ----DLSLSVGEALMRRS------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             ----HTTSBHHHHGGGSC------TTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ----hccCCHHHHHhhcc------ccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence                12345555532100      011278999999999999999999999999999999999999999999987754

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.86  E-value=4.9e-22  Score=193.84  Aligned_cols=87  Identities=24%  Similarity=0.453  Sum_probs=79.9

Q ss_pred             CCceeeEEEEecC-CCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCee-eCCCC
Q 013832           22 DTVLIPMRFVWPY-GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFI-SSEYG   99 (435)
Q Consensus        22 ~~~~~~~~f~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~-~d~~G   99 (435)
                      +...+|++|+|++ +|++|+|+|||+||+..+||+|.+ ++|.|+++++||||.|+|||+|||+|++||++|.. +|+.|
T Consensus       166 ~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G  244 (294)
T 3nme_A          166 GLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDG  244 (294)
T ss_dssp             CCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTS
T ss_pred             ccccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCC
Confidence            3567999999998 689999999999999779999863 47999999999999999999999999999999975 89999


Q ss_pred             CeeeEEEecC
Q 013832          100 IVNTVLLATE  109 (435)
Q Consensus       100 ~~nnvl~v~~  109 (435)
                      ++||+|.|.+
T Consensus       245 ~~nn~~~v~~  254 (294)
T 3nme_A          245 HTNNYAKVVD  254 (294)
T ss_dssp             CCEEEEEECC
T ss_pred             CEeEEEEECC
Confidence            9999999986

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.85  E-value=3.4e-21  Score=185.27  Aligned_cols=204  Identities=15%  Similarity=0.199  Sum_probs=143.6

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHH-HHHHhccCCCCCChhhhhhc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFIL-ILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~-il~~~~~~~~~l~~e~l~~~  247 (435)
                      ..++.++|..  .+++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++. .+...         ......
T Consensus        59 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~---------~~~~~~  126 (282)
T 2yzq_A           59 EEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKS---------EKYKGV  126 (282)
T ss_dssp             -----CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTC---------SGGGGC
T ss_pred             cCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhcc---------CCcccC
Confidence            3556677743  47789999999999999999999999999964 79999999999876 44210         000011


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH----
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL----  323 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl----  323 (435)
                      ++                 +.+|.++++++.+++++.+|++.|.+++++++||++.   .|   +++|++|.+|++    
T Consensus       127 ~v-----------------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dl~~~~~  183 (282)
T 2yzq_A          127 EI-----------------EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSE  183 (282)
T ss_dssp             BS-----------------TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGG
T ss_pred             cH-----------------HHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHhhhhh
Confidence            11                 1236778899999999999999999999999999962   35   799999999998    


Q ss_pred             --HHHHhhhcc-cC-------CC-ccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q 013832          324 --KCVCRYFRH-CS-------SS-LPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD  392 (435)
Q Consensus       324 --~~l~~~~~~-~~-------~~-~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD  392 (435)
                        +++..+.-. .+       .. ...+......    .....+++.|.++++++.+++++.+|+++|.+++++++||||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd  259 (282)
T 2yzq_A          184 IVRIMKSTELAASSEEEWILESHPTLLFEKFELQ----LPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR  259 (282)
T ss_dssp             GCC------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred             hhhhhccchhhhhhhhhhhcccchHHHHhHhhhh----hccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC
Confidence              444210000 00       00 0000000000    001123455667899999999999999999999999999999


Q ss_pred             CCCcEEEEEeHHHHHHHHh
Q 013832          393 DNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       393 ~~g~lvGiis~~DI~~~~~  411 (435)
                      ++|+++|+||++||++.+.
T Consensus       260 ~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          260 GEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             TTTEEEEEEEHHHHGGGGC
T ss_pred             CCCCEEEEEeHHHHHHHHH
Confidence            8889999999999997654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.85  E-value=1.6e-20  Score=185.16  Aligned_cols=202  Identities=15%  Similarity=0.146  Sum_probs=153.2

Q ss_pred             cccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHH
Q 013832          174 ELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK  253 (435)
Q Consensus       174 dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~  253 (435)
                      ++|  ..++++++++.++.+|++.|.+++++.+||+|++.|+++|++|..|++..+...... ...  .++...++   +
T Consensus       122 ~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~-~~~--~~~~~~~v---~  193 (330)
T 2v8q_E          122 QDS--FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE-FPK--PEFMSKSL---E  193 (330)
T ss_dssp             SSS--CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCS-SSC--CGGGGSBH---H
T ss_pred             hcc--cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhc-cCc--hhhhcCCH---H
Confidence            445  346889999999999999999999999999996348999999999999877654321 111  11111222   2


Q ss_pred             HHHHhhcccccCCCccCC-CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc
Q 013832          254 EGKAYLNRQIDSHGKAFP-RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH  332 (435)
Q Consensus       254 e~~~~~~~~~~~~g~~~~-~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~  332 (435)
                      +..            +|. ++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+||++.+....  
T Consensus       194 ~~~------------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~---~l~Giit~~dl~~~~~~~~--  253 (330)
T 2v8q_E          194 ELQ------------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKT--  253 (330)
T ss_dssp             HHT------------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSC--
T ss_pred             Hhc------------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEHHHHHHHHhccc--
Confidence            211            133 67889999999999999999999999999962   45   7999999999987654321  


Q ss_pred             cCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          333 CSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       333 ~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                          ...+..++.+++-      ....+.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+..
T Consensus       254 ----~~~~~~~v~~~~~------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~  323 (330)
T 2v8q_E          254 ----YNNLDVSVTKALQ------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  323 (330)
T ss_dssp             ----CCCCSSBHHHHGG------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             ----cccccCcHHHHHh------ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence                0112344444421      012234689999999999999999999999999999999999999999999987765


Q ss_pred             c
Q 013832          413 K  413 (435)
Q Consensus       413 ~  413 (435)
                      .
T Consensus       324 ~  324 (330)
T 2v8q_E          324 T  324 (330)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.85  E-value=4.1e-20  Score=182.41  Aligned_cols=201  Identities=15%  Similarity=0.160  Sum_probs=151.1

Q ss_pred             ccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCe----EEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          175 LLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKAR----FVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       175 l~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~----~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      +|....+++++.++.++.+|++.|.+++++.+||+|+..++    ++|++|..|++..+......      ......++ 
T Consensus       112 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~------~~~~~~~v-  184 (334)
T 2qrd_G          112 IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE------TAMLRVPL-  184 (334)
T ss_dssp             HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG------GGGCCCBG-
T ss_pred             hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc------hhhhhCcH-
Confidence            44444455899999999999999999999999999975344    99999999998876532110      00000111 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  330 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~  330 (435)
                        ++.           +.+|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+||++++....
T Consensus       185 --~~l-----------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~dl~~~~~~~~  245 (334)
T 2qrd_G          185 --NQM-----------TIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGD  245 (334)
T ss_dssp             --GGS-----------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEETHHHHHHHTTSC
T ss_pred             --HHh-----------CCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHHHHhhccc
Confidence              000           1126788999999999999999999999999999962   45   7999999999998876431


Q ss_pred             cccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       331 ~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                      .      .....++.+++...    ..+  .++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+
T Consensus       246 ~------~~~~~~v~~~m~~~----~~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~  313 (334)
T 2qrd_G          246 Y------SNLDLSVGEALLKR----PAN--FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI  313 (334)
T ss_dssp             G------GGGGSBHHHHHTTC----CTT--CCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             c------ccccCcHHHHHhcc----ccc--CCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHH
Confidence            1      11234454443210    000  03788999999999999999999999999999999999999999999887


Q ss_pred             hhc
Q 013832          411 KDK  413 (435)
Q Consensus       411 ~~~  413 (435)
                      ...
T Consensus       314 ~~~  316 (334)
T 2qrd_G          314 IYD  316 (334)
T ss_dssp             HSC
T ss_pred             Hhc
Confidence            654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.82  E-value=4e-20  Score=177.71  Aligned_cols=177  Identities=18%  Similarity=0.296  Sum_probs=128.2

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.++|.  .+++++++++|+.+|+++|.++++.++||+|+ +++++|++|..|++..+..               .+  
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~---------------~~--   61 (282)
T 2yzq_A            2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE---------------EQ--   61 (282)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             chHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhcc---------------CC--
Confidence            3455664  47889999999999999999999999999996 4899999999998743210               00  


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH-HHHhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRY  329 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~-~l~~~  329 (435)
                       ++              .+|.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|.+|+++ ++...
T Consensus        62 -v~--------------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~  120 (282)
T 2yzq_A           62 -LA--------------MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFAKS  120 (282)
T ss_dssp             -----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTC
T ss_pred             -HH--------------HHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhcc
Confidence             11              136677889999999999999999999999999963   35   7999999999987 55432


Q ss_pred             hcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          330 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       330 ~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                      .       .....+++            +.|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+||+
T Consensus       121 ~-------~~~~~~v~------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          121 E-------KYKGVEIE------------PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             S-------GGGGCBST------------TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             C-------CcccCcHH------------HHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            0       01122333            33446788999999999999999999999999999899999999999998

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.75  E-value=1.9e-18  Score=154.43  Aligned_cols=157  Identities=19%  Similarity=0.259  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC
Q 013832          157 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG  236 (435)
Q Consensus       157 e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~  236 (435)
                      ++.++.+.+.|+..++.|+|.  .++++++++.|+.+|+++|.+++++++||+|+ +|+++|+||..|++..+...... 
T Consensus         5 ~~~~~~~~~~l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~-   80 (170)
T 4esy_A            5 QARRRAIARAIRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIY-   80 (170)
T ss_dssp             HHHHHHHHHHHHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHH-
T ss_pred             HHHHHHHHHHHcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhcccc-
Confidence            445778888999999999994  58999999999999999999999999999996 48999999999987532110000 


Q ss_pred             CCCChhhhhh-ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEE
Q 013832          237 SNLTEEELET-HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLH  315 (435)
Q Consensus       237 ~~l~~e~l~~-~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvG  315 (435)
                        ...+.+.. ..............  ....+.+|+++++++.+++++.+|+++|.+++++++||++    +|   +++|
T Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g---~lvG  149 (170)
T 4esy_A           81 --EASEILSRAIPAPEVEHLFETGR--KLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG---VPVG  149 (170)
T ss_dssp             --HHHHHHTTTSCHHHHHHHHHHHT--TCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT---EEEE
T ss_pred             --chhhhhhhccchhhHHhhhcccc--ccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC---EEEE
Confidence              00000000 00000000000000  0001124889999999999999999999999999999996    35   8999


Q ss_pred             eeeHHhHHHHHHh
Q 013832          316 IASLSGILKCVCR  328 (435)
Q Consensus       316 iiT~~dIl~~l~~  328 (435)
                      |||.+||++++..
T Consensus       150 ivt~~Dil~~l~~  162 (170)
T 4esy_A          150 IVTRRDLLKLLLL  162 (170)
T ss_dssp             EEEHHHHTTTSCC
T ss_pred             EEEHHHHHHHHHh
Confidence            9999999987653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.71  E-value=1.9e-16  Score=149.68  Aligned_cols=212  Identities=13%  Similarity=0.172  Sum_probs=129.1

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|.  .++++++++.++.+|+++|.+++++++||+|+ +|+++|++|..|++..+......  .  .......+
T Consensus         6 ~~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~--~--~~~~~~~~   78 (245)
T 3l2b_A            6 KLKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDS--N--ILAKSATS   78 (245)
T ss_dssp             CCBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCT--T--HHHHTTCC
T ss_pred             cCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhh--h--hhhhccCC
Confidence            357888884  46889999999999999999999999999996 48999999999998876532111  0  00001111


Q ss_pred             HHHHHHHHHh--hcccc---cCC--------------CccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCC
Q 013832          249 ISAWKEGKAY--LNRQI---DSH--------------GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGS  309 (435)
Q Consensus       249 i~~~~e~~~~--~~~~~---~~~--------------g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~  309 (435)
                      +..+.+....  +....   ...              ..+....++.+.   .-.++...+++.+++.+++.+.......
T Consensus        79 ~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~~~~~liit~~~~~~~~  155 (245)
T 3l2b_A           79 LDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIELKVSLLIVTGGHTPSKE  155 (245)
T ss_dssp             HHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHTTCSEEEECTTCCCCHH
T ss_pred             HHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence            1111111100  00000   000              001123344442   2378899999999999998842110000


Q ss_pred             ------CCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC-CCceEecCCCCHHHHHHHHHH
Q 013832          310 ------FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQ  382 (435)
Q Consensus       310 ------~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~-~~v~tv~~d~~L~~a~~~m~~  382 (435)
                            ...+-.+.|..|.........         ...+++++            |. ++++++++++++.+|+++|.+
T Consensus       156 v~~~a~~~~~~~i~t~~d~~~~~~~~~---------~~~~v~~i------------m~~~~~~~~~~~~~~~~~~~~m~~  214 (245)
T 3l2b_A          156 IIELAKKNNITVITTPHDSFTASRLIV---------QSLPVDYV------------MTKDNLVAVSTDDLVEDVKVTMSE  214 (245)
T ss_dssp             HHHHHHHHTCEEEECSSCHHHHHHHGG---------GGSBHHHH------------SBCTTCCCEETTSBHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEeCCChHHHHHHHh---------cCCceeeE------------ecCCccEEECCCCcHHHHHHHHHh
Confidence                  001234445545443222111         12334443            34 588999999999999999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          383 AQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       383 ~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      ++++++||||++|+++|+||++||++..+
T Consensus       215 ~~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          215 TRYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             HCCSEEEEECTTCBEEEEEECC-------
T ss_pred             cCCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence            99999999999999999999999997654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.71  E-value=1.9e-17  Score=147.91  Aligned_cols=128  Identities=20%  Similarity=0.364  Sum_probs=97.9

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhccc-----CCCcc--c--
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-----SSSLP--I--  339 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~-----~~~~~--~--  339 (435)
                      +|+++++++.+++++.+|++.|.+++++++||+|.   +|   +++|+||.+||++.+.......     ....+  .  
T Consensus        23 iM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 4esy_A           23 ILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NG---HLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVE   96 (170)
T ss_dssp             GCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TS---CEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHH
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---Cc---cEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHH
Confidence            58899999999999999999999999999999963   46   7999999999987543221000     00000  0  


Q ss_pred             -cccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          340 -LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       340 -~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                       +......+       .+++.|.++++++.+++++.+|+++|.+++++++|||| +|+++|+||++||++++
T Consensus        97 ~~~~~~~~~-------~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           97 HLFETGRKL-------TASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHHTTC-------BHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTS
T ss_pred             hhhcccccc-------chhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence             00000011       13344567999999999999999999999999999998 59999999999999754

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.68  E-value=1e-16  Score=141.72  Aligned_cols=120  Identities=16%  Similarity=0.213  Sum_probs=97.3

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCc
Q 013832          271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  350 (435)
Q Consensus       271 ~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ig  350 (435)
                      ..+++++.+++|+.+|+++|.+++++++||+|+   ++   +++|++|.+|+++++.......   ......++.     
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~~v~-----   89 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDIV-----   89 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBGG-----
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEecchhhhhhhccccc---ccccccCHH-----
Confidence            368999999999999999999999999999963   45   7999999999999887542110   011123333     


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                             +.|.++++++++++++.+|+++|.++++  +||||++|+++|+||++||++.+..-
T Consensus        90 -------~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A           90 -------HMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNAL  143 (156)
T ss_dssp             -------GTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             -------HhhcCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHH
Confidence                   3345789999999999999999988765  99999999999999999999987643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.68  E-value=2.8e-16  Score=131.66  Aligned_cols=114  Identities=20%  Similarity=0.344  Sum_probs=98.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|++.|.+++++.+||++   ++|   +++|++|.+|+++++....           .++.++  
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~-----------~~v~~~--   67 (122)
T 3kpb_A            7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVD---EHG---KLVGIITSWDIAKALAQNK-----------KTIEEI--   67 (122)
T ss_dssp             CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEEC---TTS---BEEEEECHHHHHHHHHTTC-----------CBGGGT--
T ss_pred             hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHHHHHHhcc-----------cCHHHH--
Confidence            778899999999999999999999999999996   245   8999999999998876421           234433  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                |.++++++.+++++.+|+++|.+++++++||+|++|+++|+||+.||++.+.+
T Consensus        68 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           68 ----------MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ----------SBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             ----------hcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                      23578899999999999999999999999999998999999999999987654

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.68  E-value=3.9e-16  Score=139.77  Aligned_cols=119  Identities=13%  Similarity=0.157  Sum_probs=100.9

Q ss_pred             cCC--CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~--~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.  .+++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+||++.+....          ..++.+
T Consensus        47 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~  111 (172)
T 3lhh_A           47 LMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------RLELVD  111 (172)
T ss_dssp             TSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------CCCGGG
T ss_pred             hCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------cccHHH
Confidence            576  67899999999999999999999999999963  215   7999999999998775321          234444


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                      +            | ++++++.+++++.+|+++|.+++++.+||||++|+++|+||+.||+..+.....
T Consensus       112 i------------m-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~  167 (172)
T 3lhh_A          112 L------------V-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF  167 (172)
T ss_dssp             G------------C-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC
T ss_pred             H------------h-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCc
Confidence            4            3 478899999999999999999999999999999999999999999998776443

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.67  E-value=6.4e-16  Score=134.40  Aligned_cols=116  Identities=12%  Similarity=0.162  Sum_probs=99.3

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.+  +++++.+++++.+|++.|.+++++++||++.  +.|   +++|++|.+|+++.+....          ..++.+
T Consensus        28 iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~   92 (148)
T 3lv9_A           28 IMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KIELEE   92 (148)
T ss_dssp             TSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CCCGGG
T ss_pred             ccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------CccHHH
Confidence            4666  8999999999999999999999999999963  225   7999999999998876531          233444


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      +            | ++++++++++++.+|+++|.+++++++||||++|+++|+||+.||+..+..
T Consensus        93 ~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           93 I------------L-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             T------------C-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             h------------c-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            3            3 478899999999999999999999999999999999999999999987654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=2.7e-16  Score=133.86  Aligned_cols=116  Identities=10%  Similarity=0.148  Sum_probs=97.4

Q ss_pred             cCC--CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~--~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.  .+++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+|+++.+.....         ..++.+
T Consensus        11 iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~~---------~~~v~~   76 (130)
T 3i8n_A           11 VMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGSG---------QKQLGA   76 (130)
T ss_dssp             TSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTTT---------TSBHHH
T ss_pred             CCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCCC---------cCCHHH
Confidence            465  46779999999999999999999999999963  225   79999999999988764311         244544


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      ++             ++++++.+++++.+|+++|.+++++++||||++|+++|+||+.||++.+.
T Consensus        77 ~m-------------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           77 VM-------------RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             HS-------------EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             Hh-------------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            43             25779999999999999999999999999999999999999999998764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.66  E-value=1.3e-16  Score=137.18  Aligned_cols=118  Identities=9%  Similarity=0.122  Sum_probs=94.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+||++++....        ....++.+++   
T Consensus        13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~~~v~~~m---   76 (136)
T 3lfr_A           13 SQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDSDDVKKLL---   76 (136)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGGCCGGGTC---
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCCcCHHHHc---
Confidence            57889999999999999999999999999963  225   7999999999987654210        1123444442   


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||+..+....+
T Consensus        77 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~  130 (136)
T 3lfr_A           77 ----------RPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIE  130 (136)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-----
T ss_pred             ----------CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCc
Confidence                      257899999999999999999999999999999999999999999986655443

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.66  E-value=3.9e-16  Score=133.13  Aligned_cols=116  Identities=12%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+||++.+....       .+...++.+++   
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~--~~~---~lvGivt~~dl~~~~~~~~-------~~~~~~v~~~m---   76 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD--SLD---DAISMLRVREAYRLMTEKK-------EFTKEIMLRAA---   76 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEESS--SGG---GEEEEEEHHHHHHHHTSSS-------CCCHHHHHHHS---
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC--CCC---cEEEEEEHHHHHHHHhccC-------ccchhhHHHhc---
Confidence            46889999999999999999999999999952  235   7999999999998775421       11123344442   


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                ++++++++++++.+|+++|.+++++.+||+|++|+++|+||+.||+..+..
T Consensus        77 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           77 ----------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             ----------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence                      367899999999999999999999999999999999999999999987654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.66  E-value=1.7e-16  Score=134.52  Aligned_cols=115  Identities=12%  Similarity=0.159  Sum_probs=94.5

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccc
Q 013832          270 FPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  347 (435)
Q Consensus       270 ~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  347 (435)
                      |.+  +++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+|+++.+....         ...++.++
T Consensus         9 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~~~v~~~   74 (127)
T 3nqr_A            9 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAFSMDKV   74 (127)
T ss_dssp             SEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CCCCHHHH
T ss_pred             cccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CCCCHHHH
Confidence            553  4889999999999999999999999999963  225   7999999999987654221         12344444


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      +             ++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.
T Consensus        75 m-------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           75 L-------------RTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             C-------------BCCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             c-------------CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            2             25678999999999999999999999999999999999999999998643

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.65  E-value=4e-16  Score=132.70  Aligned_cols=112  Identities=12%  Similarity=0.202  Sum_probs=93.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+|+++.+...           ..++.+++   
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~-----------~~~v~~~m---   75 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLEP-----------ALDIRSLV---   75 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTCT-----------TSCGGGGC---
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhccC-----------CcCHHHHh---
Confidence            57789999999999999999999999999963  225   799999999997654310           23344442   


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++.+..
T Consensus        76 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           76 ----------RPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             ----------CCCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                      257899999999999999999999999999999999999999999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=1.5e-15  Score=127.55  Aligned_cols=119  Identities=18%  Similarity=0.299  Sum_probs=98.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|++.|.+++.+.+||++    +|   +++|++|.+|+++++.....       ....++.+++ 
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~~~m-   71 (125)
T 1pbj_A            7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEVM-   71 (125)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHHC-
T ss_pred             cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHHHHc-
Confidence            678899999999999999999999999999996    35   79999999999987765321       1124444442 


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                                 .+++.++.+++++.+|+++|.+++++++||+|+ |+++|+||++||++.+.++.|
T Consensus        72 -----------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~~~  125 (125)
T 1pbj_A           72 -----------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAKRY  125 (125)
T ss_dssp             -----------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC----
T ss_pred             -----------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhccC
Confidence                       347889999999999999999999999999998 999999999999988765543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.65  E-value=4.7e-16  Score=136.24  Aligned_cols=120  Identities=11%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEE-ecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          270 FPR--PLVYAGPNDNLKDVARKILHNEVATVPII-HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       270 ~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVv-d~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      |.+  +++++.+++++.+|++.|.+++++++||+ +.  +.+   +++|+||.+||++.+....          ..++.+
T Consensus        26 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~   90 (153)
T 3oco_A           26 MVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------KAKIST   90 (153)
T ss_dssp             SEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------TSBGGG
T ss_pred             ecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------CCcHHH
Confidence            554  78899999999999999999999999999 42  235   7999999999998876531          233444


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH  417 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~  417 (435)
                      +            | ++++++.+++++.+|+++|.+++++++||||++|+++|+||+.||+..+....+.+
T Consensus        91 ~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de  148 (153)
T 3oco_A           91 I------------M-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDE  148 (153)
T ss_dssp             T------------C-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC-----
T ss_pred             H------------h-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCc
Confidence            3            3 47899999999999999999999999999999999999999999999887655543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.65  E-value=7.6e-16  Score=131.05  Aligned_cols=126  Identities=11%  Similarity=0.221  Sum_probs=102.1

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.|+|....++++++++.|+.+|++.|.++++.++||+|.+.++++|++|..|++..+.....           .
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~-----------~   71 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG-----------Q   71 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT-----------T
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC-----------c
Confidence            56789999998777888999999999999999999999999999654799999999999876542110           1


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .++   ++.              | ++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..||++.+
T Consensus        72 ~~v---~~~--------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~~vGivt~~dil~~l  127 (130)
T 3i8n_A           72 KQL---GAV--------------M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD---EYG---TVLGLVTLEDIFEHL  127 (130)
T ss_dssp             SBH---HHH--------------S-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHH
T ss_pred             CCH---HHH--------------h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc---CCC---CEEEEEEHHHHHHHH
Confidence            112   221              4 4577999999999999999999999999996   345   799999999999987


Q ss_pred             H
Q 013832          327 C  327 (435)
Q Consensus       327 ~  327 (435)
                      .
T Consensus       128 ~  128 (130)
T 3i8n_A          128 V  128 (130)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.65  E-value=3.8e-16  Score=132.43  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=97.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.+++.++.+++++.+|++.|.+++++.+||++   + |   +++|++|.+||++.+.....        ...++.++ 
T Consensus        10 ~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~-   73 (128)
T 3gby_A           10 LAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWPT--------VKEKLGEE-   73 (128)
T ss_dssp             GCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSCC--------TTCBCCGG-
T ss_pred             hhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCCc--------ccCcHHHH-
Confidence            4788899999999999999999999999999996   2 5   89999999999865432100        01233333 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 |.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+
T Consensus        74 -----------m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           74 -----------LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             -----------GCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             -----------ccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence                       34578899999999999999999999999999999999999999999987754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.64  E-value=2e-15  Score=128.45  Aligned_cols=118  Identities=20%  Similarity=0.324  Sum_probs=100.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|++.|.+++++.+||++    +|   +++|++|.+|+++++.....        ...++.++ 
T Consensus         9 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~-   72 (133)
T 2ef7_A            9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAEEF-   72 (133)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGGGT-
T ss_pred             hccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cccCHHHH-
Confidence            4778899999999999999999999999999996    34   79999999999887764311        12344443 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                                 |.+++.++.+++++.+|+++|.+++++++||||++|+++|+||+.||+..+.+.
T Consensus        73 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           73 -----------MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             -----------SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             -----------cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence                       234788999999999999999999999999999899999999999999887654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.64  E-value=2.1e-15  Score=131.05  Aligned_cols=127  Identities=13%  Similarity=0.235  Sum_probs=106.4

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.|+|....++++++++.|+.+|++.|.++++..+||+|.+.++++|+||..|++..+.....            
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~------------   87 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENK------------   87 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSC------------
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCC------------
Confidence            56789999997656889999999999999999999999999999644799999999999876643210            


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .++   +              .+| ++++++.+++++.+|+++|.+++++.+||+|   +.|   +++|+||..||++.+
T Consensus        88 ~~v---~--------------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dil~~l  143 (148)
T 3lv9_A           88 IEL---E--------------EIL-RDIIYISENLTIDKALERIRKEKLQLAIVVD---EYG---GTSGVVTIEDILEEI  143 (148)
T ss_dssp             CCG---G--------------GTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---SEEEEEEHHHHHHHH
T ss_pred             ccH---H--------------Hhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHH
Confidence            011   1              136 7889999999999999999999999999996   345   799999999999988


Q ss_pred             Hhh
Q 013832          327 CRY  329 (435)
Q Consensus       327 ~~~  329 (435)
                      ...
T Consensus       144 ~~~  146 (148)
T 3lv9_A          144 VGE  146 (148)
T ss_dssp             HHT
T ss_pred             hCc
Confidence            753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.64  E-value=7.9e-16  Score=135.93  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=106.4

Q ss_pred             HHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChh
Q 013832          163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE  242 (435)
Q Consensus       163 i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e  242 (435)
                      +.+||. .++.++|....++++++++.|+.+|+.+|.+++++++||+|. .++++|+||..|++..+......     .+
T Consensus         9 ~e~~l~-~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~-----~~   81 (156)
T 3k6e_A            9 FETFLL-GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLS-----QE   81 (156)
T ss_dssp             HHHHHH-TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCC-----HH
T ss_pred             HHHHhh-ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccc-----cc
Confidence            334443 456788877789999999999999999999999999999996 48999999999998876543211     11


Q ss_pred             hhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH
Q 013832          243 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI  322 (435)
Q Consensus       243 ~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI  322 (435)
                      .+...++                 +.+|.++++++.+++++.+|+++|.++++  +||+|   ++|   +++||||.+||
T Consensus        82 ~~~~~~v-----------------~~im~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd---~~g---~l~GiiT~~Di  136 (156)
T 3k6e_A           82 IMADTDI-----------------VHMTKTDVAVVSPDFTITEVLHKLVDESF--LPVVD---AEG---IFQGIITRKSI  136 (156)
T ss_dssp             HHTTSBG-----------------GGTCBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC---TTS---BEEEEEEHHHH
T ss_pred             cccccCH-----------------HHhhcCCceecccccHHHHHHHHHHHcCC--eEEEe---cCC---EEEEEEEHHHH
Confidence            1111111                 11478899999999999999999998764  99996   356   89999999999


Q ss_pred             HHHHHhhh
Q 013832          323 LKCVCRYF  330 (435)
Q Consensus       323 l~~l~~~~  330 (435)
                      ++.+....
T Consensus       137 l~~~~~~~  144 (156)
T 3k6e_A          137 LKAVNALL  144 (156)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHh
Confidence            99987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=9e-16  Score=130.89  Aligned_cols=126  Identities=12%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.|+|....++++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+...    ...     ..   
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~----~~~-----~~---   69 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEF-----TK---   69 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS----SCC-----CH---
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc----Ccc-----ch---
Confidence            467788865567899999999999999999999999999986557999999999998765321    111     11   


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      ..+++.              | ++++++.+++++.+|++.|.+++++.+||+|   ++|   +++||+|..||++.+..
T Consensus        70 ~~v~~~--------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           70 EIMLRA--------------A-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             HHHHHH--------------S-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC---TTS---CEEEEEEHHHHHHHHHC
T ss_pred             hhHHHh--------------c-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc---CCC---CEEEEeeHHHHHHHHhC
Confidence            112221              4 5678999999999999999999999999996   345   79999999999998764

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.63  E-value=3.3e-15  Score=129.96  Aligned_cols=121  Identities=15%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.+++++.+|++.|.+++++++||+|.   +|   +++|+||.+||++++........  ......++.      
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~--~~~~~~~v~------   90 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP---MY---KLHGLISTAMILDGILGLERIEF--ERLEEMKVE------   90 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHTBCSSSBCG--GGGGGCBGG------
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---CEEEEEEHHHHHHHHHhhcccch--hHHhcCCHH------
Confidence            46889999999999999999999999999963   45   79999999999987653211000  001122333      


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                            +.|.++++++.+++++.+|+++|.++++  +||||++|+++|+||++||++.+.+..
T Consensus        91 ------~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           91 ------QVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             ------GTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             ------HHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence                  3445688999999999999999999997  999999999999999999999877643

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.63  E-value=2.9e-15  Score=129.03  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=97.7

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|++.|.+++++++||++++. ..   +++|++|.+||++++.....        ...++.++ 
T Consensus        10 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~-   76 (141)
T 2rih_A           10 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLD--------LDGPAMPI-   76 (141)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCC--------TTSBSGGG-
T ss_pred             HhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCC-cc---eeEEEEEHHHHHHHHhcCCC--------CCCCHHHH-
Confidence            4778899999999999999999999999999997311 11   49999999999987764311        12344443 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                 |.++++++.++ ++.+|+++|.+++++++||||++|+++|+||++||++...
T Consensus        77 -----------m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           77 -----------ANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             -----------CBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             -----------cCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence                       33588999999 9999999999999999999999999999999999987544

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.62  E-value=4.5e-15  Score=131.62  Aligned_cols=117  Identities=15%  Similarity=0.281  Sum_probs=98.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.+|++.|.+++++.+||++.   +|   +++|+||.+||++.+......      ....++.++    
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~----   98 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DG---VVLGIFTERDLVKAVAGQGAA------SLQQSVSVA----   98 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHGGG------GGTSBGGGT----
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHHhcCCc------cccCCHHHH----
Confidence            46889999999999999999999999999963   45   799999999999988765211      112444444    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                              |.++++++.+++++.+|+++|.+++++++||||+ |+++|+||+.||++.+...
T Consensus        99 --------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A           99 --------MTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             --------SBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             --------hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence                    3357889999999999999999999999999998 9999999999999987654

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.62  E-value=3e-15  Score=132.17  Aligned_cols=125  Identities=18%  Similarity=0.301  Sum_probs=99.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-Cccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPICAI  347 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-~~~~~~~~v~~l  347 (435)
                      +|.++++++.+++++.+|++.|.+++++.+||+|.   +|   +++|+||.+||++++...+..... .......++.++
T Consensus        10 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   83 (160)
T 2o16_A           10 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV   83 (160)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHH
Confidence            47778899999999999999999999999999962   45   799999999999987654321100 000112333333


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                  |.++++++.+++++.+|+++|.+++++++||||+ |+++|+||++||+..+..
T Consensus        84 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           84 ------------MHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             ------------SCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             ------------hcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                        3468899999999999999999999999999998 999999999999987654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.62  E-value=3.4e-15  Score=128.41  Aligned_cols=126  Identities=18%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+|+++++.....      .....++.+++
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~m   83 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEAL   83 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSBHHHHH
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCccHHHHH
Confidence            36788999999999999999999999999999963   35   79999999999987754210      11234555543


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      .....      ..++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+..
T Consensus        84 ~~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           84 MRRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             hcCcc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            11000      00257899999999999999999999999999989999999999999987653

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.62  E-value=4.5e-15  Score=127.11  Aligned_cols=123  Identities=16%  Similarity=0.326  Sum_probs=100.0

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|++.|.+++++.+||+++   +|   +++|++|.+|+++.+.....       ....++.++ 
T Consensus        12 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~~-   77 (138)
T 2yzi_A           12 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDIPVERI-   77 (138)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTSBGGGT-
T ss_pred             HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcCC-------cccCCHHHH-
Confidence            47788999999999999999999999999999962   45   79999999999743322100       112334333 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccccc
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH  417 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~  417 (435)
                                 |.++++++.+++++.+|+++|.+++++++ |||++|+++|+||+.||++.+.......
T Consensus        78 -----------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~~  134 (138)
T 2yzi_A           78 -----------MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLETA  134 (138)
T ss_dssp             -----------CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCCC
T ss_pred             -----------hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHhh
Confidence                       34578899999999999999999999999 9998899999999999999887655433

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.61  E-value=4e-15  Score=131.11  Aligned_cols=118  Identities=17%  Similarity=0.305  Sum_probs=97.9

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++ +++.+++++.+|++.|.+++++.+||++.   +|   +++|+||.+||++.+....       .....++.+++
T Consensus        22 im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~~m   87 (159)
T 3fv6_A           22 FQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDR---DA---VLVGVLSRKDLLRASIGQQ-------ELTSVPVHIIM   87 (159)
T ss_dssp             SCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHTSCS-------CTTTCBGGGTS
T ss_pred             HcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---cEEEEEeHHHHHHHhhccC-------cccCcCHHHHH
Confidence            46664 59999999999999999999999999963   45   7999999999998774321       11234444443


Q ss_pred             CcccccccCCCCCC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC---cEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND---SLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~--~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g---~lvGiis~~DI~~~~~~  412 (435)
                                  .+  +++++.+++++.+|+++|.+++++++||||++|   +++|+||++||++.+.+
T Consensus        88 ------------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           88 ------------TRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ------------EETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------------cCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence                        33  788999999999999999999999999999888   99999999999987765

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=7.7e-15  Score=128.93  Aligned_cols=125  Identities=14%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcE-EEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcc-cCCC-------ccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVAT-VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRH-CSSS-------LPI  339 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~-lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~-~~~~-------~~~  339 (435)
                      +|.++++++.+++++.+|++.|.++++++ +||+++    +   +++|++|.+||++++...+.. ....       ...
T Consensus        21 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (157)
T 1o50_A           21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   93 (157)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHH
Confidence            48889999999999999999999999999 999973    2   599999999999886532100 0000       001


Q ss_pred             cccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       340 ~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ...++.            +.|.+ ++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+.
T Consensus        94 ~~~~v~------------~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A           94 IAKNAS------------EIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             SSCBHH------------HHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cCCcHH------------HHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            122233            33445 78999999999999999999999999999889999999999999877653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.61  E-value=4.8e-15  Score=133.12  Aligned_cols=121  Identities=7%  Similarity=0.095  Sum_probs=101.4

Q ss_pred             cCC--CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~--~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|+  .+++++.+++++.+|++.|.+++++++||++.  ..+   +++|+||.+||++++....          ..++. 
T Consensus        41 iM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~~~v~-  104 (173)
T 3ocm_A           41 IMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------RVRRN-  104 (173)
T ss_dssp             TSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------SCCGG-
T ss_pred             hCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------cchhH-
Confidence            464  46889999999999999999999999999963  225   7999999999998876431          12333 


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccC
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI  418 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l  418 (435)
                      +     +        ++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||+..+....+.+.
T Consensus       105 ~-----~--------~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~  163 (173)
T 3ocm_A          105 R-----L--------RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDED  163 (173)
T ss_dssp             G-----S--------BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTT
T ss_pred             h-----c--------CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcc
Confidence            1     1        478899999999999999999999999999999999999999999998887666543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.61  E-value=3.4e-15  Score=127.74  Aligned_cols=118  Identities=17%  Similarity=0.376  Sum_probs=97.7

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhH-HHHHHhhhcccCCCccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI-LKCVCRYFRHCSSSLPILKLPICAI  347 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dI-l~~l~~~~~~~~~~~~~~~~~v~~l  347 (435)
                      +|.++++++.+++++.+|++.|.+++.+.+||+++   ++   +++|++|.+|+ ++++....        ....++.++
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v~~~   78 (138)
T 2p9m_A           13 VMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLETTIGDV   78 (138)
T ss_dssp             TSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSSCBHHHH
T ss_pred             hhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCCcCHHHH
Confidence            47788999999999999999999999999999963   35   79999999999 87654311        113444444


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcC-----CCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~-----i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      +            .++++++.+++++.+|+++|.+++     ++++||+|++|+++|+||++||++.+.+
T Consensus        79 m------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           79 M------------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             S------------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             h------------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            2            357889999999999999999999     9999999989999999999999987654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.60  E-value=1.5e-14  Score=133.56  Aligned_cols=123  Identities=14%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhc---CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCc
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL  337 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~---~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~  337 (435)
                      ......|.+|+++++++.++.++.+|++.|.++   +++.+||++.   .+   +++|++|.+|++..       .    
T Consensus        51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~-------~----  113 (205)
T 3kxr_A           51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---AD---KYLGTVRRYDIFKH-------E----  113 (205)
T ss_dssp             SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TC---BEEEEEEHHHHTTS-------C----
T ss_pred             CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CC---eEEEEEEHHHHHhC-------C----
Confidence            334455778999999999999999999999997   8999999963   45   89999999998631       0    


Q ss_pred             cccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          338 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       338 ~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                        ...++.++            |.++++++++++++.+|+++|.+++++++||||++|+++|+||+.||+..+....
T Consensus       114 --~~~~v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          114 --PHEPLISL------------LSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             --TTSBGGGG------------CCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             --CcchHHHH------------hcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence              12344444            3467899999999999999999999999999999999999999999999887654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.60  E-value=4.6e-15  Score=129.02  Aligned_cols=138  Identities=18%  Similarity=0.236  Sum_probs=107.8

Q ss_pred             HHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhh
Q 013832          164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE  243 (435)
Q Consensus       164 ~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~  243 (435)
                      .+.|...++.|+|....++++++++.|+.+|++.|.++++..+||+|+ +++++|+||..|++..+...    .....+.
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~----~~~~~~~   83 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGL----ERIEFER   83 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCS----SSBCGGG
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhh----cccchhH
Confidence            345677889999976567899999999999999999999999999996 48999999999998655311    1111111


Q ss_pred             hhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       244 l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                      ....++                 +.+|.++++++.+++++.+|++.|.++++  +||++   ++|   +++|+||..||+
T Consensus        84 ~~~~~v-----------------~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd---~~g---~~~Giit~~dil  138 (150)
T 3lqn_A           84 LEEMKV-----------------EQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN---EDG---YFEGILTRRAIL  138 (150)
T ss_dssp             GGGCBG-----------------GGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC---TTC---BEEEEEEHHHHH
T ss_pred             HhcCCH-----------------HHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC---CCC---cEEEEEEHHHHH
Confidence            111111                 11377888999999999999999999987  99996   346   899999999999


Q ss_pred             HHHHhhhc
Q 013832          324 KCVCRYFR  331 (435)
Q Consensus       324 ~~l~~~~~  331 (435)
                      +++.....
T Consensus       139 ~~l~~~~~  146 (150)
T 3lqn_A          139 KLLNKKVR  146 (150)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhH
Confidence            99987653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.60  E-value=6.9e-15  Score=125.54  Aligned_cols=115  Identities=16%  Similarity=0.323  Sum_probs=95.2

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.+|++.|.+++++.+||++    +|   +++|++|.+||++.+.....      .....++.++    
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~----   79 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQVKEI----   79 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBGGGT----
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccCCHHHh----
Confidence            6889999999999999999999999999995    34   79999999999865443210      0112334433    


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                              |.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+.+
T Consensus        80 --------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           80 --------MTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             --------SBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             --------ccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence                    345788999999999999999999999999999 7999999999999987654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.60  E-value=2.2e-15  Score=132.54  Aligned_cols=111  Identities=17%  Similarity=0.257  Sum_probs=93.0

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|++  +++++.+++++.+|++.|.+++++++||++.  +.+   +++|++|.+|+++.+...          ...++.+
T Consensus        43 iM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~~~v~~  107 (156)
T 3oi8_A           43 AMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQFHLKS  107 (156)
T ss_dssp             TCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GGCCHHH
T ss_pred             eeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------CcccHHH
Confidence            5664  7889999999999999999999999999963  224   699999999997654321          1244444


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                      ++             ++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||+
T Consensus       108 im-------------~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          108 IL-------------RPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             HC-------------BCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             Hc-------------CCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            42             2578999999999999999999999999999999999999999985

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.60  E-value=6.5e-15  Score=131.73  Aligned_cols=127  Identities=15%  Similarity=0.218  Sum_probs=103.7

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.|+|....++++++++.|+.+|++.|.++++..+||+|.+.++++|+||..|++..+....    ..       
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~-------  107 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RL-------  107 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC----CC-------
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC----cc-------
Confidence            5678899999765788999999999999999999999999999964479999999999987654210    00       


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       ++   +              .+| ++++++.+++++.+|+++|.+++++.+||+|   +.|   +++||||..||++.+
T Consensus       108 -~v---~--------------~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~g---~lvGiit~~Dil~~l  162 (172)
T 3lhh_A          108 -EL---V--------------DLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD---EYG---DLKGLVTLQDMMDAL  162 (172)
T ss_dssp             -CG---G--------------GGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHH
T ss_pred             -cH---H--------------HHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe---CCC---CEEEEeeHHHHHHHH
Confidence             11   1              137 7889999999999999999999999999996   345   799999999999998


Q ss_pred             Hhh
Q 013832          327 CRY  329 (435)
Q Consensus       327 ~~~  329 (435)
                      ...
T Consensus       163 ~~~  165 (172)
T 3lhh_A          163 TGE  165 (172)
T ss_dssp             HTT
T ss_pred             hCC
Confidence            754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.59  E-value=3e-15  Score=131.11  Aligned_cols=127  Identities=17%  Similarity=0.232  Sum_probs=104.6

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeee-eCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLW-DFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~-D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      |...++.++|....++++++++.|+.+|++.|.++++..+||+ |.+.++++|+||..|++..+.....           
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~-----------   85 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDK-----------   85 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTT-----------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCC-----------
Confidence            4567888888654578899999999999999999999999999 6444799999999999876643210           


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                       .++                 +.+| ++++++.+++++.+|+.+|.+++++++||++   +.|   +++||||..||++.
T Consensus        86 -~~v-----------------~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~~g---~~vGivt~~dil~~  140 (153)
T 3oco_A           86 -AKI-----------------STIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID---EYG---GTSGIITDKDVYEE  140 (153)
T ss_dssp             -SBG-----------------GGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC---TTS---CEEEEECHHHHHHH
T ss_pred             -CcH-----------------HHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe---CCC---CEEEEeeHHHHHHH
Confidence             011                 1136 7889999999999999999999999999996   345   79999999999999


Q ss_pred             HHhh
Q 013832          326 VCRY  329 (435)
Q Consensus       326 l~~~  329 (435)
                      +...
T Consensus       141 l~~~  144 (153)
T 3oco_A          141 LFGN  144 (153)
T ss_dssp             HHC-
T ss_pred             Hhcc
Confidence            8754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.59  E-value=1.8e-15  Score=128.12  Aligned_cols=124  Identities=12%  Similarity=0.267  Sum_probs=98.0

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|....++++++++.|+.+|++.|.++++..+||+|.+.++++|++|..|++..+..   ...        ..+
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~~~--------~~~   70 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAE--------AFS   70 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST---TCC--------CCC
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc---cCC--------CCC
Confidence            356777886545688999999999999999999999999999654799999999998764421   100        111


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      +   ++.              |. +++++.+++++.+|+++|.+++++++||+|   +.|   +++|+||.+||++.+.
T Consensus        71 v---~~~--------------m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           71 M---DKV--------------LR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELIV  125 (127)
T ss_dssp             H---HHH--------------CB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC---TTS---CEEEEEEHHHHHHHC-
T ss_pred             H---HHH--------------cC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHHh
Confidence            2   221              43 367899999999999999999999999996   345   7999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.59  E-value=5.9e-15  Score=133.34  Aligned_cols=120  Identities=14%  Similarity=0.206  Sum_probs=99.6

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|+++|.+++++++||++.   +|   +++|++|.+||++++.....      .....++.++ 
T Consensus        14 im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~------~~~~~~v~~i-   80 (184)
T 1pvm_A           14 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNK------KPDEVPIRLV-   80 (184)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCC------CGGGSBGGGT-
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhccc------CcccCCHHHH-
Confidence            47788999999999999999999999999999963   35   79999999999987653210      0112333333 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 |.++++++.+++++.+|+++|.+++++.+||||++|+++|+||+.||++.+..
T Consensus        81 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           81 -----------MRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             -----------SBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             -----------hCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                       34578899999999999999999999999999988999999999999986655

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.59  E-value=7.3e-15  Score=127.90  Aligned_cols=114  Identities=17%  Similarity=0.239  Sum_probs=96.1

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.+  +++++.+++++.+|++.|.+++++.+||++.   +|   +++|+||.+||++.+....       .....++.+
T Consensus        33 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~   99 (149)
T 3k2v_A           33 IMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRVFDTGV-------DMRDASIAD   99 (149)
T ss_dssp             TSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHHHCSSS-------CCTTCBHHH
T ss_pred             HhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHHHhcCC-------CcccCcHHH
Confidence            4777  8999999999999999999999999999963   45   7999999999998776431       112345555


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  408 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~  408 (435)
                      ++            .++++++.+++++.+|+++|.+++++++||+|++ +++|+||+.||++
T Consensus       100 ~m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          100 VM------------TRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HS------------EESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             Hc------------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            43            2477899999999999999999999999999976 9999999999874

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.59  E-value=1.1e-15  Score=132.63  Aligned_cols=124  Identities=15%  Similarity=0.237  Sum_probs=96.3

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhc--------ccCCCcc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR--------HCSSSLP  338 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~--------~~~~~~~  338 (435)
                      +|.+  +++++.+++++.+|++.|.+++++.+||++.   ++   +++|++|.+||++++.....        ...  ..
T Consensus        10 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~--~~   81 (152)
T 4gqw_A           10 FMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE---DW---KLVGLVSDYDLLALDSGDSTWKTFNAVQKLL--SK   81 (152)
T ss_dssp             TSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHTTCC----CCHHHHHHHTC-----
T ss_pred             ccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC---CC---eEEEEEEHHHHHHhhcccCcccchHHHHHHH--HH
Confidence            3655  7899999999999999999999999999963   45   79999999999764331100        000  00


Q ss_pred             ccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       339 ~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      ....++.++            |.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+
T Consensus        82 ~~~~~v~~~------------m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           82 TNGKLVGDL------------MTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             --CCBHHHH------------SEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hccccHHHh------------cCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            112333333            33467889999999999999999999999999999999999999999987664

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.58  E-value=3.1e-15  Score=138.79  Aligned_cols=161  Identities=12%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      +|.+.|.  .++++++++.|+.+|+++|.++++..+||+|+ +++++|+||..|+...+.               ...+ 
T Consensus        14 ~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~---------------~~~v-   74 (213)
T 1vr9_A           14 KVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL---------------DSSV-   74 (213)
T ss_dssp             BGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT---------------TSBS-
T ss_pred             CHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC---------------CCcH-
Confidence            5556663  46789999999999999999999999999996 489999999999753210               0011 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  330 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~  330 (435)
                        +              .+|.++++++.+++++.+|+++|.+++++++||+++   +|   +++|+||.+||++.+....
T Consensus        75 --~--------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           75 --F--------------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EM---RLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             --G--------------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TC---BEEEEEEHHHHHHHHHHSC
T ss_pred             --H--------------HHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHHHh
Confidence              1              137788999999999999999999999999999962   35   8999999999998876432


Q ss_pred             cccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 013832          331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND  395 (435)
Q Consensus       331 ~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g  395 (435)
                      ..            .+.  ++..         .+.+.....++.+|.++|.+++++.++|++.+|
T Consensus       133 ~~------------~~~--~~~l---------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          133 AM------------DVP--GIRF---------SVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             cC------------CCC--cEEE---------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            10            000  0000         011113334599999999999999999986544

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.58  E-value=2.4e-15  Score=127.97  Aligned_cols=116  Identities=17%  Similarity=0.300  Sum_probs=95.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH-HHHhhhcccCCCcccccccccccc
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~-~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      |.++++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|.+|+++ ++.....       ....++.+++
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~~~v~~~m   80 (133)
T 1y5h_A           14 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD-------PNTATAGELA   80 (133)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC-------TTTSBHHHHH
T ss_pred             hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC-------ccccCHHHHh
Confidence            6678889999999999999999999999999963   35   7999999999984 4432210       1123444442


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                  .++++++.+++++.+|+++|.+++++++||+|+ |+++|+||++||++.+.
T Consensus        81 ------------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           81 ------------RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             ------------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred             ------------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence                        357889999999999999999999999999997 99999999999997654

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.58  E-value=2.5e-15  Score=127.69  Aligned_cols=124  Identities=17%  Similarity=0.317  Sum_probs=99.8

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ...++.|+|....++++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+.   ..  .        .
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~---~~--~--------~   69 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML---EP--A--------L   69 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT---CT--T--------S
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc---cC--C--------c
Confidence            356778888755678899999999999999999999999999964479999999999875432   10  0        0


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      .+   ++              +|. +++++.+++++.+|+++|.+++++.+||+|   +.|   +++|+||..||++.+.
T Consensus        70 ~v---~~--------------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd---~~g---~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           70 DI---RS--------------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID---EHG---GISGLVTMEDVLEQIV  125 (129)
T ss_dssp             CG---GG--------------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC---C-C---CEEEEEEHHHHHHHHH
T ss_pred             CH---HH--------------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHHh
Confidence            11   11              243 478999999999999999999999999996   345   7999999999999887


Q ss_pred             h
Q 013832          328 R  328 (435)
Q Consensus       328 ~  328 (435)
                      .
T Consensus       126 g  126 (129)
T 3jtf_A          126 G  126 (129)
T ss_dssp             H
T ss_pred             C
Confidence            5

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.58  E-value=1.4e-14  Score=126.96  Aligned_cols=119  Identities=13%  Similarity=0.212  Sum_probs=99.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.+|++.|.+++++.+||.+    +|   +++|++|.+||++++......      ....++.+++   
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~m---   84 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKATRVEEIM---   84 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSSCBHHHHS---
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------ccccCHHHHc---
Confidence            6678999999999999999999999999963    35   799999999999887654211      1234455442   


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA  416 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~  416 (435)
                               .++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+......
T Consensus        85 ---------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~  139 (157)
T 4fry_A           85 ---------TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQF  139 (157)
T ss_dssp             ---------BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred             ---------CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHh
Confidence                     35788999999999999999999999999999 79999999999999988765543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.57  E-value=6.3e-15  Score=131.71  Aligned_cols=126  Identities=19%  Similarity=0.270  Sum_probs=96.0

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhccc---------CCCc-
Q 013832          270 FPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC---------SSSL-  337 (435)
Q Consensus       270 ~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~---------~~~~-  337 (435)
                      |.+  +++++.+++++.+|++.|.+++++++||++.   ++   +++|+||.+||++++.......         .... 
T Consensus        10 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T 3sl7_A           10 MTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD---NW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK   83 (180)
T ss_dssp             SEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHTCC-------------------CCC
T ss_pred             cCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---eEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence            555  7899999999999999999999999999963   45   7999999999986432110000         0000 


Q ss_pred             ----------cccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q 013832          338 ----------PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  407 (435)
Q Consensus       338 ----------~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~  407 (435)
                                .....++.            +.|.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||+
T Consensus        84 ~~~~~~~~~~~~~~~~v~------------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil  151 (180)
T 3sl7_A           84 TFNELQKLISKTYGKVVG------------DLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV  151 (180)
T ss_dssp             SHHHHHHHHHTTTTCBHH------------HHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHH
T ss_pred             hhHHHHHHHhccccccHH------------HHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHH
Confidence                      00112222            33445788999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 013832          408 ALAKDK  413 (435)
Q Consensus       408 ~~~~~~  413 (435)
                      +.+...
T Consensus       152 ~~~~~~  157 (180)
T 3sl7_A          152 RAALQI  157 (180)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.57  E-value=1.8e-14  Score=129.30  Aligned_cols=127  Identities=14%  Similarity=0.129  Sum_probs=106.1

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.++|....++++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+.....    .       
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~----~-------  101 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGR----V-------  101 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSS----C-------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCc----c-------
Confidence            46789999997666889999999999999999999999999998654799999999999876643210    0       


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       .+                 .  |.++++++.+++++.+|+.+|.+++++.+||+|   +.|   +++||||..||++.+
T Consensus       102 -~v-----------------~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd---e~g---~lvGiIT~~Dil~~l  155 (173)
T 3ocm_A          102 -RR-----------------N--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD---EFG---AIEGLVTPIDVFEAI  155 (173)
T ss_dssp             -CG-----------------G--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC---TTC---CEEEEECHHHHHHHH
T ss_pred             -hh-----------------H--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe---CCC---CEEEEEeHHHHHHHH
Confidence             11                 0  125678999999999999999999999999996   345   799999999999998


Q ss_pred             Hhhh
Q 013832          327 CRYF  330 (435)
Q Consensus       327 ~~~~  330 (435)
                      ...+
T Consensus       156 ~~~i  159 (173)
T 3ocm_A          156 AGEF  159 (173)
T ss_dssp             HCCC
T ss_pred             hCcC
Confidence            8543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.56  E-value=2e-14  Score=125.72  Aligned_cols=123  Identities=15%  Similarity=0.236  Sum_probs=97.4

Q ss_pred             cCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccc
Q 013832          269 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  346 (435)
Q Consensus       269 ~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~  346 (435)
                      +|.+  +++++.+++++.+|++.|.+++++++||++.   +|   +++|++|.+||++++......  ........++. 
T Consensus        16 im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~--~~~~~~~~~v~-   86 (157)
T 2emq_A           16 FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLERI--EFERLETMKVE-   86 (157)
T ss_dssp             TCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSSB--CGGGGGTCBGG-
T ss_pred             hccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhccccc--chHHhcCCcHH-
Confidence            4654  7889999999999999999999999999963   45   799999999998765431100  00001122333 


Q ss_pred             ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          347 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       347 l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                                 +.|.++++++.+++++.+|+++|.++++  +||||++|+++|+||++||++.+...
T Consensus        87 -----------~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           87 -----------EVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             -----------GTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             -----------HHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                       3344688999999999999999999988  99999999999999999999987754

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.56  E-value=2.6e-14  Score=121.52  Aligned_cols=128  Identities=13%  Similarity=0.266  Sum_probs=103.4

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |+..++.++|..  ++++++++.|+.+|++.|.++++..+||+|  +++++|++|..|++..+......          .
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~~----------~   66 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSL----------E   66 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCCT----------T
T ss_pred             CCcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCCc----------c
Confidence            356788888854  578999999999999999999999999999  48999999999998765421110          0


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .++   .              .+|.++++++.+++++.+|++.|.+++++++||++.   +|   +++|+||..||++.+
T Consensus        67 ~~v---~--------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g---~~~Giit~~dll~~~  123 (133)
T 2ef7_A           67 TKA---E--------------EFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITRAI  123 (133)
T ss_dssp             CBG---G--------------GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHH
T ss_pred             cCH---H--------------HHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHH
Confidence            011   1              136678889999999999999999999999999962   45   799999999999998


Q ss_pred             Hhhhc
Q 013832          327 CRYFR  331 (435)
Q Consensus       327 ~~~~~  331 (435)
                      ...+.
T Consensus       124 ~~~~~  128 (133)
T 2ef7_A          124 DDMFE  128 (133)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            87643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=126.74  Aligned_cols=129  Identities=12%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|++.|.+++++++||+++ +++|   +++|++|.+||++++.......   .+....++.+++.
T Consensus        19 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~~~m~   91 (164)
T 2pfi_A           19 MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQDILA   91 (164)
T ss_dssp             CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHHHHH
T ss_pred             cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhhhhhc
Confidence            7788999999999999999999999999999963 1245   8999999999998875432110   0111234444432


Q ss_pred             cccccccCCCCCCC-ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          350 GTWVPKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       350 gt~~~~~g~~~~~~-v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ...       ...+ ++++.+++++.+|+++|.+++++++|||| +|+++|+||++||++.+.+.
T Consensus        92 ~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A           92 RGC-------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             TTC-------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             ccc-------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence            110       0112 67899999999999999999999999999 79999999999999887654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.56  E-value=2e-14  Score=126.63  Aligned_cols=140  Identities=14%  Similarity=0.239  Sum_probs=109.9

Q ss_pred             HHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCC
Q 013832          160 RHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL  239 (435)
Q Consensus       160 ~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l  239 (435)
                      ...+.+.|...++.|+|..   .++++++.++.+|++.|.++++..+||+|++ ++++|+||..|++..+..   .. . 
T Consensus         7 ~~~l~~~l~~~~v~~im~~---~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~---~~-~-   77 (159)
T 3fv6_A            7 TQLLADKLKKLQVKDFQSI---PVVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIG---QQ-E-   77 (159)
T ss_dssp             CHHHHHHHTTCBGGGSCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTS---CS-C-
T ss_pred             HHHHHHHHhhCCHHHHcCC---CEEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhc---cC-c-
Confidence            3567888999999999963   4599999999999999999999999999964 899999999999876521   10 0 


Q ss_pred             ChhhhhhccHHHHHHHHHhhcccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEee
Q 013832          240 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA  317 (435)
Q Consensus       240 ~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGii  317 (435)
                          ....++   .+              +|.+  +++++.+++++.+|+++|.+++++++||++++....   +++|+|
T Consensus        78 ----~~~~~v---~~--------------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~---~~vGii  133 (159)
T 3fv6_A           78 ----LTSVPV---HI--------------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGF---EVIGRV  133 (159)
T ss_dssp             ----TTTCBG---GG--------------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSE---EEEEEE
T ss_pred             ----ccCcCH---HH--------------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcce---eEEEEE
Confidence                011111   11              2555  788999999999999999999999999997421111   599999


Q ss_pred             eHHhHHHHHHhhhcc
Q 013832          318 SLSGILKCVCRYFRH  332 (435)
Q Consensus       318 T~~dIl~~l~~~~~~  332 (435)
                      |.+||++++......
T Consensus       134 t~~dil~~l~~~~~~  148 (159)
T 3fv6_A          134 TKTNMTKILVSLSEN  148 (159)
T ss_dssp             EHHHHHHHHHHHHTT
T ss_pred             EHHHHHHHHHHHhhc
Confidence            999999999876543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.56  E-value=2e-15  Score=129.59  Aligned_cols=126  Identities=13%  Similarity=0.236  Sum_probs=98.7

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|....++++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+..   ..       ....+
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~~-------~~~~~   71 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK---AD-------GDSDD   71 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS---SS-------GGGCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh---cc-------CCCcC
Confidence            456778886556789999999999999999999999999999654799999999998764321   00       00011


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +   +              .+|.+ ++++.+++++.+|+.+|.+++++.+||+|   +.|   +++||||.+||++.+..
T Consensus        72 v---~--------------~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           72 V---K--------------KLLRP-ATFVPESKRLNVLLREFRANHNHMAIVID---EYG---GVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             G---G--------------GTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHTTC--
T ss_pred             H---H--------------HHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHHhC
Confidence            1   1              12544 78999999999999999999999999996   345   79999999999987654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.55  E-value=4.4e-14  Score=134.34  Aligned_cols=139  Identities=10%  Similarity=0.072  Sum_probs=100.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC-------------
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-------------  335 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~-------------  335 (435)
                      +|+++++++.+++++.+|+++|.+++++++||+++ .+.+   +++|+||++||++++.........             
T Consensus        18 iMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 2d4z_A           18 IMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR   93 (250)
T ss_dssp             SSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred             hcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            58999999999999999999999999999999973 2235   799999999999987654211000             


Q ss_pred             --------------Cccccccc--------------------------------------------------cccccC--
Q 013832          336 --------------SLPILKLP--------------------------------------------------ICAIPV--  349 (435)
Q Consensus       336 --------------~~~~~~~~--------------------------------------------------v~~l~i--  349 (435)
                                    ...++...                                                  ..++.+  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (250)
T 2d4z_A           94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL  173 (250)
T ss_dssp             -------------------------------------------------------------------------CCSCCBH
T ss_pred             ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence                          00000000                                                  000000  


Q ss_pred             ---cc-----ccccc--C-CCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 ---GT-----WVPKI--G-EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 ---gt-----~~~~~--g-~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                         ..     ....+  . ..|....+++.++++|.+|..+|.+.+++++||++ +|+|+||||+.||++++..
T Consensus       174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence               00     00011  1 23556788999999999999999999999999998 6999999999999998874

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.55  E-value=1.8e-14  Score=120.48  Aligned_cols=119  Identities=18%  Similarity=0.333  Sum_probs=97.4

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.++|..  ++++++++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+.....             ++ 
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~-------------~v-   64 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNKK-------------TI-   64 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTCC-------------BG-
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhccc-------------CH-
Confidence            45566643  6789999999999999999999999999995 4899999999999876542110             11 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                        .              .+|.++++++.+++++.+|++.|.+++++++||++   ++|   +++|++|..||++++..
T Consensus        65 --~--------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~~g---~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           65 --E--------------EIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD---DYR---RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             --G--------------GTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHC-
T ss_pred             --H--------------HHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC---CCC---CEEEEEeHHHHHHHhhc
Confidence              1              13667888999999999999999999999999996   245   89999999999998764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=1.4e-14  Score=128.43  Aligned_cols=130  Identities=17%  Similarity=0.231  Sum_probs=104.5

Q ss_pred             hccCceecccCCC-CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          167 LSTHTAYELLPES-GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       167 l~~~~~~dl~p~s-~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      |...++.|+|... .++++++++.|+.+|++.|.++++..+||+|++ ++++|+||..|++..+......        ..
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~--------~~   91 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAA--------SL   91 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGG--------GG
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCc--------cc
Confidence            4456777777542 468899999999999999999999999999964 8999999999998876543210        00


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..++                 +.+|.++++++.+++++.+|+++|.+++++++||++   + |   +++|+||..||+++
T Consensus        92 ~~~v-----------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~~~Giit~~dil~~  147 (165)
T 3fhm_A           92 QQSV-----------------SVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE---N-G---RLAGIISIGDVVKA  147 (165)
T ss_dssp             TSBG-----------------GGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHHH
T ss_pred             cCCH-----------------HHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHHHHH
Confidence            0111                 113678889999999999999999999999999996   3 5   89999999999998


Q ss_pred             HHhh
Q 013832          326 VCRY  329 (435)
Q Consensus       326 l~~~  329 (435)
                      +...
T Consensus       148 ~~~~  151 (165)
T 3fhm_A          148 RIGE  151 (165)
T ss_dssp             TTCC
T ss_pred             HHHH
Confidence            7654

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.55  E-value=4.7e-15  Score=160.84  Aligned_cols=81  Identities=12%  Similarity=0.206  Sum_probs=68.6

Q ss_pred             CCceeeEEEEecC--CCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEcCCceEEEEEEECCeee--cCCCCC---e
Q 013832           22 DTVLIPMRFVWPY--GGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR--HDEHQP---F   93 (435)
Q Consensus        22 ~~~~~~~~f~w~~--~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~--~d~~~~---~   93 (435)
                      ....++|+|+++.  +|++|+|+||||+|++. .+|.+.   +|.|+++++||||+|||||+|||+|+  +||++|   +
T Consensus        14 ~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y   90 (696)
T 4aee_A           14 RKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKKC   90 (696)
T ss_dssp             EEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEEE
T ss_pred             CCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCcccc
Confidence            3445666666654  79999999999999765 578763   79999999999999999999999999  788886   5


Q ss_pred             eeCCCCCeeeEE
Q 013832           94 ISSEYGIVNTVL  105 (435)
Q Consensus        94 ~~d~~G~~nnvl  105 (435)
                      +.|++|..|+|.
T Consensus        91 ~~~~~g~~n~~~  102 (696)
T 4aee_A           91 VHTSFFPEYKKC  102 (696)
T ss_dssp             EECSSCTTSEEE
T ss_pred             cccCCcccccee
Confidence            789999999985

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.54  E-value=1.5e-14  Score=127.17  Aligned_cols=122  Identities=8%  Similarity=0.153  Sum_probs=97.0

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccc
Q 013832          270 FPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  347 (435)
Q Consensus       270 ~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  347 (435)
                      |.+  +++++.+++++.+|++.|.+++++++||+++   +|   +++|++|.+||++++......  ........++.++
T Consensus        20 m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~---~lvGivt~~dl~~~~~~~~~~--~~~~~~~~~v~~~   91 (159)
T 1yav_A           20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERI--EFEKLDQITVEEV   91 (159)
T ss_dssp             SEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSB--CGGGTTTSBHHHH
T ss_pred             hCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---CEEEEeEHHHHHHHhhhhccc--chhhhccCCHHHh
Confidence            555  7889999999999999999999999999963   45   799999999999876532100  0000112334433


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                                  |.++++++.+++++.+|+++|.++++  +||||++|+++|+||++||+..+...
T Consensus        92 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~  143 (159)
T 1yav_A           92 ------------MLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKH  143 (159)
T ss_dssp             ------------SBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ------------cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence                        33578899999999999999999887  99999999999999999999987654

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.54  E-value=7.9e-14  Score=116.92  Aligned_cols=121  Identities=18%  Similarity=0.277  Sum_probs=97.5

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.|+|.  .++++++++.|+.+|++.|.++++..+||+|  +++++|++|..|++..+.....         ....++ 
T Consensus         2 ~v~~~m~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~---------~~~~~v-   67 (125)
T 1pbj_A            2 RVEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD---------LAEVKV-   67 (125)
T ss_dssp             CHHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC---------TTTSBH-
T ss_pred             CHHHhcC--CCceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc---------ccccCH-
Confidence            3456663  3788999999999999999999999999999  4899999999999876653211         011122 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                        .+              +|.++++++.+++++.+|++.|.+++++++||++   + |   +++|++|.+||++++..
T Consensus        68 --~~--------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~-~---~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           68 --WE--------------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE---D-D---EIIGVISATDILRAKMA  122 (125)
T ss_dssp             --HH--------------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHHHHC-
T ss_pred             --HH--------------HcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE---C-C---EEEEEEEHHHHHHHHHh
Confidence              11              2667889999999999999999999999999996   2 5   89999999999988754

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.54  E-value=2.4e-14  Score=132.72  Aligned_cols=113  Identities=11%  Similarity=0.168  Sum_probs=96.8

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .|.++++++.+++++.+|+++|.+++++++||++.   ++   +++|++|.+|+++.+.             ..++.++ 
T Consensus        18 ~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~l~Givt~~dl~~~~~-------------~~~v~~i-   77 (213)
T 1vr9_A           18 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR---EG---HFRGVVNKEDLLDLDL-------------DSSVFNK-   77 (213)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT---TS---BEEEEEEGGGGTTSCT-------------TSBSGGG-
T ss_pred             hhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC---CC---EEEEEEEHHHHHhhcC-------------CCcHHHH-
Confidence            47889999999999999999999999999999962   35   7999999999864321             2344444 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 |.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||+..+..
T Consensus        78 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           78 -----------VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             -----------CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             -----------ccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence                       33578899999999999999999999999999988999999999999987654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.54  E-value=1.7e-14  Score=122.13  Aligned_cols=123  Identities=18%  Similarity=0.228  Sum_probs=99.7

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      +.++.++|..  ++.+++++.++.+|++.|.++++..+||+|.  ++++|++|..|+...+..   .. .      ...+
T Consensus         4 s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~---~~-~------~~~~   69 (128)
T 3gby_A            4 SVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKG---WP-T------VKEK   69 (128)
T ss_dssp             TCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSS---SC-C------TTCB
T ss_pred             ceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhh---CC-c------ccCc
Confidence            4678888855  5778999999999999999999999999996  899999999998753321   00 0      0001


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +                 +.+|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..||++++.+
T Consensus        70 v-----------------~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---~~g---~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           70 L-----------------GEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD---EDG---RYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             C-----------------CGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC---TTC---BEEEEEEHHHHHHHHHT
T ss_pred             H-----------------HHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC---CCC---CEEEEEEHHHHHHHHHh
Confidence            1                 113667889999999999999999999999999996   346   89999999999998864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.54  E-value=1.2e-14  Score=125.91  Aligned_cols=142  Identities=18%  Similarity=0.278  Sum_probs=102.7

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      +..++.|+|....++++++++.|+.+|++.|.++++..+||+|.+ ++++|+||..|++..+......   .....+...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~---~~~~~~~~~   78 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTW---KTFNAVQKL   78 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CC---HHHHHHHTC
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcc---cchHHHHHH
Confidence            356888999776678999999999999999999999999999964 7999999999987532211000   000000000


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                       .......         ..+.+|.++++++.+++++.+|+++|.+++++++||++   ++|   +++|+||.+||++++.
T Consensus        79 -~~~~~~~---------~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd---~~g---~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           79 -LSKTNGK---------LVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD---SDG---KLVGIITRGNVVRAAL  142 (152)
T ss_dssp             ------CC---------BHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC---TTS---BEEEEEEHHHHHHHHH
T ss_pred             -HHHhccc---------cHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC---CCC---cEEEEEEHHHHHHHHH
Confidence             0000000         00113667788999999999999999999999999996   345   8999999999999987


Q ss_pred             hh
Q 013832          328 RY  329 (435)
Q Consensus       328 ~~  329 (435)
                      ..
T Consensus       143 ~~  144 (152)
T 4gqw_A          143 QI  144 (152)
T ss_dssp             C-
T ss_pred             hc
Confidence            64

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.53  E-value=5.4e-14  Score=126.32  Aligned_cols=135  Identities=11%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             ceEe--CCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC----Cccccccccccc
Q 013832          274 LVYA--GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS----SLPILKLPICAI  347 (435)
Q Consensus       274 ~v~v--~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~----~~~~~~~~v~~l  347 (435)
                      ++++  .+++++.+|++.|.+++++++||+++ +++|   +++|+||.+|+++.+.........    ....+.....+.
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            7788  99999999999999999999999931 1345   899999999999987754211000    000000000000


Q ss_pred             cCc-ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          348 PVG-TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       348 ~ig-t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ... .....+++.|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+...
T Consensus       101 ~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          101 PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence            000 000113344556889999999999999999999999999999 89999999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.53  E-value=4.2e-14  Score=120.87  Aligned_cols=129  Identities=16%  Similarity=0.314  Sum_probs=101.8

Q ss_pred             HHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHH-HHHHHHhccCCCCCChh
Q 013832          164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF-ILILRELGNHGSNLTEE  242 (435)
Q Consensus       164 ~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~-i~il~~~~~~~~~l~~e  242 (435)
                      .++|...++.++|..  ++++++++.|+.+|++.|.++++..+||+|++ ++++|++|..|+ ...+..   . .     
T Consensus         2 ~~~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~---~-~-----   69 (138)
T 2p9m_A            2 IDTLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRD---K-Y-----   69 (138)
T ss_dssp             ---CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTT---C-C-----
T ss_pred             ccccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhh---c-c-----
Confidence            356788899999943  67899999999999999999999999999964 899999999998 654421   0 0     


Q ss_pred             hhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcC-----CcEEEEEecCCCCCCCCeEEEee
Q 013832          243 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIA  317 (435)
Q Consensus       243 ~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~-----v~~lpVvd~~~~~g~~~~lvGii  317 (435)
                       ....++   .+              +|.++++++.+++++.+|++.|.+++     ++++||++.   +|   +++|++
T Consensus        70 -~~~~~v---~~--------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~---~g---~~~Gii  125 (138)
T 2p9m_A           70 -TLETTI---GD--------------VMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK---NN---KLVGII  125 (138)
T ss_dssp             -CSSCBH---HH--------------HSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT---TS---BEEEEE
T ss_pred             -cCCcCH---HH--------------HhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC---CC---eEEEEE
Confidence             011112   11              26678889999999999999999999     999999962   45   899999


Q ss_pred             eHHhHHHHHHh
Q 013832          318 SLSGILKCVCR  328 (435)
Q Consensus       318 T~~dIl~~l~~  328 (435)
                      |.+||++++..
T Consensus       126 t~~dll~~~~~  136 (138)
T 2p9m_A          126 SDGDIIRTISK  136 (138)
T ss_dssp             EHHHHHHHHHH
T ss_pred             EHHHHHHHHHh
Confidence            99999998764

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.53  E-value=1.5e-13  Score=121.16  Aligned_cols=134  Identities=13%  Similarity=0.220  Sum_probs=103.2

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ..++.|+|..  ++++++++.|+.+|+++|.++++..+||+|+ .++++|+||..|++..+......... ........+
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~-~~~~~~~~~   79 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQ-GDSLAFETP   79 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CCCB
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhccccc-ccchhcccC
Confidence            4577888843  6789999999999999999999999999996 48999999999998876542210000 000000111


Q ss_pred             HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      +   .+              +|.++++++.+++++.+|+..|.+++++.+||++   + |   +++|+||.+||++++..
T Consensus        80 v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           80 L---FE--------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA---K-D---VLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             H---HH--------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE---T-T---EEEEEECHHHHHHHHHH
T ss_pred             H---HH--------------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE---C-C---EEEEEEEHHHHHHHHHH
Confidence            1   11              2678899999999999999999999999999996   2 5   89999999999999876


Q ss_pred             hh
Q 013832          329 YF  330 (435)
Q Consensus       329 ~~  330 (435)
                      ..
T Consensus       136 ~~  137 (160)
T 2o16_A          136 LL  137 (160)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.52  E-value=1.7e-13  Score=130.30  Aligned_cols=150  Identities=12%  Similarity=0.153  Sum_probs=108.0

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC-CCeEEEeeehHHHHHHHHHhcc-CCC---C----
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS-KARFVGVLSASDFILILRELGN-HGS---N----  238 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~-~~~~vGilT~~D~i~il~~~~~-~~~---~----  238 (435)
                      ...+|.|+|.  .+++++.++.++.+|.++|.+++++++||+|+. .++++|+||..||+.++..... ...   .    
T Consensus        11 ~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            4567889994  589999999999999999999999999999964 3689999999999987764311 000   0    


Q ss_pred             ----------------------CChhh----------------------------------------------------h
Q 013832          239 ----------------------LTEEE----------------------------------------------------L  244 (435)
Q Consensus       239 ----------------------l~~e~----------------------------------------------------l  244 (435)
                                            +....                                                    .
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                                  00000                                                    0


Q ss_pred             hhcc---HHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832          245 ETHT---ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  321 (435)
Q Consensus       245 ~~~~---i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d  321 (435)
                      ...+   +..|.+..  .....+.....|...++++.++++|.+|+.+|.+.|++++||++    .|   +|+||||..|
T Consensus       169 ~~i~~~~~~~~~~~~--l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~----~G---rLVGIVTrkD  239 (250)
T 2d4z_A          169 EMLTLEEIYRWEQRE--KNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MG---KLVGVVALAE  239 (250)
T ss_dssp             SCCBHHHHHHHHHHH--TTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHH
T ss_pred             cccChhhhhhHHHHh--cCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE----CC---EEEEEEEHHH
Confidence            0001   11222211  11111212224778889999999999999999999999999995    36   8999999999


Q ss_pred             HHHHHHh
Q 013832          322 ILKCVCR  328 (435)
Q Consensus       322 Il~~l~~  328 (435)
                      |++++..
T Consensus       240 l~kai~~  246 (250)
T 2d4z_A          240 IQAAIEG  246 (250)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.51  E-value=2.8e-14  Score=127.44  Aligned_cols=152  Identities=19%  Similarity=0.291  Sum_probs=103.5

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCC--CCC-Ch--hhh
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG--SNL-TE--EEL  244 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~--~~l-~~--e~l  244 (435)
                      .++.|+|....++++++++.|+.+|+++|.++++..+||+|++ ++++|+||..|++..+.......  ..+ ..  ..+
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------CC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4677788665578899999999999999999999999999964 79999999999975322111000  000 00  000


Q ss_pred             hhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          245 ETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       245 ~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      .  .............  ....+.+|.++++++.+++++.+|+++|.+++++++||++   ++|   +++|+||.+||++
T Consensus        83 ~--~~~~~~~~~~~~~--~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~vGiit~~dil~  152 (180)
T 3sl7_A           83 K--TFNELQKLISKTY--GKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD---ADG---KLIGILTRGNVVR  152 (180)
T ss_dssp             C--SHHHHHHHHHTTT--TCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC---TTC---BEEEEEEHHHHHH
T ss_pred             h--hhHHHHHHHhccc--cccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHH
Confidence            0  0000000000000  0000123677788999999999999999999999999996   346   8999999999999


Q ss_pred             HHHhhhcc
Q 013832          325 CVCRYFRH  332 (435)
Q Consensus       325 ~l~~~~~~  332 (435)
                      ++......
T Consensus       153 ~~~~~~~~  160 (180)
T 3sl7_A          153 AALQIKRN  160 (180)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhhh
Confidence            99876543

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.51  E-value=1.5e-13  Score=118.12  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=99.0

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCC--eEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKA--RFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~--~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      .++.|+|.  .++++++++.|+.+|++.|.++++..+||+|+ ++  +++|+||..|++..+.....    .      ..
T Consensus         5 ~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~~----~------~~   71 (141)
T 2rih_A            5 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRLD----L------DG   71 (141)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTCC----T------TS
T ss_pred             eEHHHHhc--CCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCCC----C------CC
Confidence            46778885  47889999999999999999999999999996 36  89999999999876542110    0      00


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      ++                 +.+|.++++++.++ ++.+|++.|.+++++++||++   ++|   +++|+||.+||++.+.
T Consensus        72 ~v-----------------~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dll~~~~  127 (141)
T 2rih_A           72 PA-----------------MPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN---KNG---ELVGVLSIRDLCFERA  127 (141)
T ss_dssp             BS-----------------GGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHSCHH
T ss_pred             CH-----------------HHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc---CCC---cEEEEEEHHHHHHHHH
Confidence            11                 11367889999999 999999999999999999996   245   7999999999987765


Q ss_pred             h
Q 013832          328 R  328 (435)
Q Consensus       328 ~  328 (435)
                      .
T Consensus       128 ~  128 (141)
T 2rih_A          128 I  128 (141)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.51  E-value=1.1e-13  Score=121.05  Aligned_cols=136  Identities=19%  Similarity=0.228  Sum_probs=103.5

Q ss_pred             hhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       166 ~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      .|...++.++|....++++++++.|+.+|++.|.++++..+||+|+ +++++|+||..|++..+..   . .........
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~---~-~~~~~~~~~   81 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILG---L-ERIEFERLE   81 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBC---S-SSBCGGGGG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhc---c-cccchHHhc
Confidence            3567889999865457889999999999999999999999999996 4799999999998764421   1 001000111


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..++                 ..+|.++++++.+++++.+|+..|.++++  +||++.   +|   +++|+||.+||+++
T Consensus        82 ~~~v-----------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~---~g---~~~Giit~~dil~~  136 (157)
T 2emq_A           82 TMKV-----------------EEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND---DG---YFAGIFTRREVLKQ  136 (157)
T ss_dssp             TCBG-----------------GGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS---SS---SEEEEEEHHHHHHH
T ss_pred             CCcH-----------------HHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC---CC---eEEEEEEHHHHHHH
Confidence            1111                 11377889999999999999999999988  999962   45   79999999999999


Q ss_pred             HHhhhc
Q 013832          326 VCRYFR  331 (435)
Q Consensus       326 l~~~~~  331 (435)
                      +.....
T Consensus       137 ~~~~~~  142 (157)
T 2emq_A          137 LNKQLH  142 (157)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            887644

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.51  E-value=1.5e-13  Score=132.59  Aligned_cols=120  Identities=15%  Similarity=0.274  Sum_probs=98.6

Q ss_pred             cCCCccCCCCceEeCCCCCHHHHHHHHHhc-----CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcc
Q 013832          264 DSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP  338 (435)
Q Consensus       264 ~~~g~~~~~~~v~v~~~~sL~da~~~m~~~-----~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~  338 (435)
                      ...|.+|+++++++.+++++.+|++.|.++     +++++||++.   .+   +++|+||.+|++..      .      
T Consensus       135 ~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~------~------  196 (278)
T 2yvy_A          135 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D------  196 (278)
T ss_dssp             TBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS------C------
T ss_pred             chHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC------C------
Confidence            344668989999999999999999999987     7999999963   35   79999999999742      0      


Q ss_pred             ccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          339 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       339 ~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                       ...++.+            .|.++++++++++++.+|+++|.+++++.+||||++|+++|+||..||+..+....
T Consensus       197 -~~~~v~~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~  259 (278)
T 2yvy_A          197 -PRTRVAE------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  259 (278)
T ss_dssp             -TTCBSTT------------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred             -CCCcHHH------------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence             0233333            34468889999999999999999999999999999999999999999998876544

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.50  E-value=7.9e-14  Score=121.29  Aligned_cols=121  Identities=11%  Similarity=0.265  Sum_probs=98.3

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.|+|....++++++++.|+.+|++.|.++++..+||+|++ ++++|+||..|++..+.....         ....++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~---------~~~~~v   97 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVD---------MRDASI   97 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSC---------CTTCBH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCC---------cccCcH
Confidence            5888888654478899999999999999999999999999964 899999999999876642110         111122


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      .   +              +|.++++++.+++++.+|++.|.+++++.+||+++    +   +++|+||.+||++
T Consensus        98 ~---~--------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~Giit~~dil~  148 (149)
T 3k2v_A           98 A---D--------------VMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG----D---HLLGVVHMHDLLR  148 (149)
T ss_dssp             H---H--------------HSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHTC
T ss_pred             H---H--------------HcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----C---EEEEEEEHHHhhc
Confidence            1   1              15677889999999999999999999999999962    3   6999999999964

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.50  E-value=1e-13  Score=124.43  Aligned_cols=158  Identities=13%  Similarity=0.135  Sum_probs=107.7

Q ss_pred             HhhccCceecccCCCCC--eEEe--CCCccHHHHHHHHHHCCCceeeeee-CCCCeEEEeeehHHHHHHHHHhccCCCCC
Q 013832          165 VFLSTHTAYELLPESGK--VVAL--DIDLPVKQAFHILYEQGISMAPLWD-FSKARFVGVLSASDFILILRELGNHGSNL  239 (435)
Q Consensus       165 ~~l~~~~~~dl~p~s~~--vi~l--d~~~~v~eA~~~l~~~~i~s~PV~D-~~~~~~vGilT~~D~i~il~~~~~~~~~l  239 (435)
                      +++...++.|+|....+  ++++  +++.++.+|+++|.++++..+||+| .+.++++|+||..|++..+.........+
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~   85 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV   85 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCc
Confidence            67788899999976532  7788  9999999999999999999999993 23589999999999998765432111000


Q ss_pred             ChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeH
Q 013832          240 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASL  319 (435)
Q Consensus       240 ~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~  319 (435)
                      ....+....-.. .+. ..........+.+|.++++++.+++++.+|+.+|.+++++++||++    +|   +++|+||.
T Consensus        86 ~~~~~~~~~~~~-~~~-~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd----~g---~~vGiit~  156 (185)
T 2j9l_A           86 VSTSIIYFTEHS-PPL-PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH----NG---RLLGIITK  156 (185)
T ss_dssp             CTTCEEECSSSC-CCC-CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEH
T ss_pred             cccceeecccCC-ccc-ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE----CC---EEEEEEEH
Confidence            000000000000 000 0000000001224667889999999999999999999999999996    35   89999999


Q ss_pred             HhHHHHHHhhhc
Q 013832          320 SGILKCVCRYFR  331 (435)
Q Consensus       320 ~dIl~~l~~~~~  331 (435)
                      +||++++.....
T Consensus       157 ~dll~~l~~~~~  168 (185)
T 2j9l_A          157 KDVLKHIAQMAN  168 (185)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhc
Confidence            999999887643

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.49  E-value=4.1e-14  Score=124.36  Aligned_cols=121  Identities=14%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.|+|....++++++++.|+.+|++.|.++++..+||+|.+.++++|+||..|++..+...            ..
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~------------~~  102 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP------------EQ  102 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG------------GG
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC------------Cc
Confidence            567899999976567899999999999999999999999999997545999999999987532110            11


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                      .++   ++.              |. +++++.+++++.+|++.|.+++++.+||+|   +.|   +++||||..||+
T Consensus       103 ~~v---~~i--------------m~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd---~~g---~~~Givt~~Dil  155 (156)
T 3oi8_A          103 FHL---KSI--------------LR-PAVFVPEGKSLTALLKEFREQRNHMAIVID---EYG---GTSGLVTFEDII  155 (156)
T ss_dssp             CCH---HHH--------------CB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC---TTS---SEEEEEEHHHHC
T ss_pred             ccH---HHH--------------cC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC---CCC---CEEEEEEHHHhc
Confidence            112   221              53 478999999999999999999999999996   345   799999999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.49  E-value=3.1e-13  Score=118.57  Aligned_cols=134  Identities=13%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCce-eeeeeCCCCeEEEeeehHHHHHHHHHh----ccCCCCCCh-
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISM-APLWDFSKARFVGVLSASDFILILREL----GNHGSNLTE-  241 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s-~PV~D~~~~~~vGilT~~D~i~il~~~----~~~~~~l~~-  241 (435)
                      ...++.++|.  .+++++++++|+.+|++.|.++++.. +||+|.+  +++|+||..|++..+...    ......+.. 
T Consensus        14 ~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~   89 (157)
T 1o50_A           14 KVKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSS   89 (157)
T ss_dssp             BHHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-------C
T ss_pred             ccccHhhccc--CCCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHH
Confidence            3445667774  47899999999999999999999999 9999963  999999999998865421    000000000 


Q ss_pred             -hhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHH
Q 013832          242 -EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLS  320 (435)
Q Consensus       242 -e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~  320 (435)
                       ......++   ++              +|.+ ++++.+++++.+|+++|.+++++++||++.   +|   +++|+||.+
T Consensus        90 ~~~~~~~~v---~~--------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~vGiit~~  145 (157)
T 1o50_A           90 MKRLIAKNA---SE--------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE---KG---EIVGDLNSL  145 (157)
T ss_dssp             CCCCSSCBH---HH--------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHH
T ss_pred             HHHHcCCcH---HH--------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC---CC---EEEEEEEHH
Confidence             00011111   11              2667 899999999999999999999999999962   45   799999999


Q ss_pred             hHHHHHHhh
Q 013832          321 GILKCVCRY  329 (435)
Q Consensus       321 dIl~~l~~~  329 (435)
                      ||++.+...
T Consensus       146 dll~~l~~~  154 (157)
T 1o50_A          146 EILLALWKG  154 (157)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            999988754

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.49  E-value=1.2e-13  Score=121.34  Aligned_cols=135  Identities=19%  Similarity=0.238  Sum_probs=103.5

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |...++.++|....++++++++.++.+|++.|.++++..+||+|++ ++++|+||..|++..+...    ..+.......
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~----~~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGL----ERIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCS----SSBCGGGTTT
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhh----cccchhhhcc
Confidence            4567888888653468899999999999999999999999999964 7999999999998755311    0010011111


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .++   .+              +|.++++++.+++++.+|+++|.++++  +||++.   +|   +++|+||.+||++++
T Consensus        86 ~~v---~~--------------~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~---~g---~~vGiit~~dil~~~  140 (159)
T 1yav_A           86 ITV---EE--------------VMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND---EQ---VFEGIFTRRVVLKEL  140 (159)
T ss_dssp             SBH---HH--------------HSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT---TC---BEEEEEEHHHHHHHH
T ss_pred             CCH---HH--------------hcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC---CC---eEEEEEEHHHHHHHH
Confidence            122   11              266788999999999999999999887  999962   45   899999999999998


Q ss_pred             Hhhhc
Q 013832          327 CRYFR  331 (435)
Q Consensus       327 ~~~~~  331 (435)
                      .....
T Consensus       141 ~~~~~  145 (159)
T 1yav_A          141 NKHIR  145 (159)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            87643

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.49  E-value=1.3e-13  Score=120.74  Aligned_cols=126  Identities=15%  Similarity=0.289  Sum_probs=100.5

Q ss_pred             ceecccCCC----CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          171 TAYELLPES----GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       171 ~~~dl~p~s----~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      ++.|+|...    .+++++++++|+.+|++.|.++++..+||.|  +++++|+||..|++..+......        ...
T Consensus         8 ~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~--------~~~   77 (157)
T 4fry_A            8 TVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERS--------SKA   77 (157)
T ss_dssp             BHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCC--------SSS
T ss_pred             HHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCC--------ccc
Confidence            566666543    6788999999999999999999999999954  58999999999998765422111        011


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      .++   ++              +|.++++++.+++++.+|+++|.+++++++||++    +|   +++|+||.+||++++
T Consensus        78 ~~v---~~--------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~~~Giit~~dil~~l  133 (157)
T 4fry_A           78 TRV---EE--------------IMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD----GG---KLIGLISIGDLVKSV  133 (157)
T ss_dssp             CBH---HH--------------HSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             cCH---HH--------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHH
Confidence            122   22              2667889999999999999999999999999996    25   899999999999998


Q ss_pred             Hhhh
Q 013832          327 CRYF  330 (435)
Q Consensus       327 ~~~~  330 (435)
                      ....
T Consensus       134 ~~~~  137 (157)
T 4fry_A          134 IADQ  137 (157)
T ss_dssp             HTTC
T ss_pred             HHHH
Confidence            8654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.49  E-value=1.5e-13  Score=117.54  Aligned_cols=129  Identities=19%  Similarity=0.287  Sum_probs=102.3

Q ss_pred             hhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          166 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       166 ~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      .|...++.++|.  .++++++++.|+.+|++.|.++++..+||+|+ +++++|+||..|++..+.   ..+..      .
T Consensus         3 ~l~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~---~~~~~------~   70 (138)
T 2yzi_A            3 MDMKAPIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVI---VPGLP------Y   70 (138)
T ss_dssp             CCTTSBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTT---TTCCC------T
T ss_pred             chhhhhHHHHhc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHH---hcCCc------c
Confidence            356678899885  47889999999999999999999999999996 489999999999863211   11100      0


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..++                 ..+|.++++++.+++++.+|++.|.+++++++ |++.   +|   +++|++|..||+++
T Consensus        71 ~~~v-----------------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g---~~~Giit~~dil~~  126 (138)
T 2yzi_A           71 DIPV-----------------ERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG---KIVGIFTLSDLLEA  126 (138)
T ss_dssp             TSBG-----------------GGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT---EEEEEEEHHHHHHH
T ss_pred             cCCH-----------------HHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC---CEEEEEEHHHHHHH
Confidence            0111                 11367888999999999999999999999999 9973   45   89999999999998


Q ss_pred             HHhhh
Q 013832          326 VCRYF  330 (435)
Q Consensus       326 l~~~~  330 (435)
                      +....
T Consensus       127 ~~~~~  131 (138)
T 2yzi_A          127 SRRRL  131 (138)
T ss_dssp             HHCCS
T ss_pred             HHHHH
Confidence            87543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.49  E-value=1.2e-13  Score=117.71  Aligned_cols=125  Identities=21%  Similarity=0.310  Sum_probs=97.9

Q ss_pred             ceecccC-CCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          171 TAYELLP-ESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       171 ~~~dl~p-~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      ++.|+|. ...++++++++.|+.+|++.|.++++..+||+|  +++++|++|..|++..+.   ..+..     ....++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~---~~~~~-----~~~~~v   76 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSY---LLDKP-----VKDTQV   76 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGG---GSSSC-----GGGSBG
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHH---HcCCC-----cccCCH
Confidence            6677774 125788999999999999999999999999998  489999999999875321   11100     001111


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                                       +.+|.++++++.+++++.+|++.|.+++++.+||++    +|   +++|+||.+||++++...
T Consensus        77 -----------------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           77 -----------------KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DG---KVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             -----------------GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHC-
T ss_pred             -----------------HHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe----CC---EEEEEEEHHHHHHHHHhc
Confidence                             113778899999999999999999999999999996    25   799999999999987643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.48  E-value=4e-14  Score=120.34  Aligned_cols=125  Identities=19%  Similarity=0.282  Sum_probs=96.7

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHH-HHHHhccCCCCCChhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFIL-ILRELGNHGSNLTEEELE  245 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~-il~~~~~~~~~l~~e~l~  245 (435)
                      ++..++.++|.  .++++++++.|+.+|++.|.++++..+||+|++ ++++|++|..|++. .+....    .     ..
T Consensus         5 ~~~~~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~----~-----~~   72 (133)
T 1y5h_A            5 FTMTTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGL----D-----PN   72 (133)
T ss_dssp             ---CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTC----C-----TT
T ss_pred             hhhcCHHHHhc--CCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCC----C-----cc
Confidence            34456777774  367889999999999999999999999999864 89999999999873 332110    0     01


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..++   .+.              |.++++++.+++++.+|++.|.+++++++||++   + |   +++|++|.+||+++
T Consensus        73 ~~~v---~~~--------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~-g---~~~Giit~~dil~~  128 (133)
T 1y5h_A           73 TATA---GEL--------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS---E-H---RLVGIVTEADIARH  128 (133)
T ss_dssp             TSBH---HHH--------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHHT
T ss_pred             ccCH---HHH--------------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHHHHH
Confidence            1122   222              557888999999999999999999999999996   2 5   89999999999876


Q ss_pred             HH
Q 013832          326 VC  327 (435)
Q Consensus       326 l~  327 (435)
                      +.
T Consensus       129 l~  130 (133)
T 1y5h_A          129 LP  130 (133)
T ss_dssp             CC
T ss_pred             HH
Confidence            54

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=120.83  Aligned_cols=137  Identities=10%  Similarity=0.140  Sum_probs=101.7

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeC-CCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDF-SKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~-~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      ...++.|+|..  ++++++++.|+.+|+++|.++++..+||+|+ ++++++|+||..|++..+......  ..   ....
T Consensus        11 ~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~--~~---~~~~   83 (164)
T 2pfi_A           11 HHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS--RA---PGHQ   83 (164)
T ss_dssp             CSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------------CCC
T ss_pred             cCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc--cC---Cccc
Confidence            45678888854  6788999999999999999999999999996 358999999999998766421110  00   0001


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCC-ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~-~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..+   .+.+...         .+..+ ++++.+++++.+|+++|.+++++++||++    +|   +++|+||.+||+++
T Consensus        84 ~~v---~~~m~~~---------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~l~Giit~~dil~~  144 (164)
T 2pfi_A           84 QCL---QDILARG---------CPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS----RG---RAVGCVSWVEMKKA  144 (164)
T ss_dssp             CBH---HHHHHTT---------CCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEEEHHHHHHH
T ss_pred             chh---hhhhccc---------ccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEHHHHHHH
Confidence            112   2222210         01112 68899999999999999999999999996    25   89999999999999


Q ss_pred             HHhhh
Q 013832          326 VCRYF  330 (435)
Q Consensus       326 l~~~~  330 (435)
                      +....
T Consensus       145 ~~~~~  149 (164)
T 2pfi_A          145 ISNLT  149 (164)
T ss_dssp             HHHHH
T ss_pred             HHhhh
Confidence            88754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.48  E-value=3.9e-13  Score=115.38  Aligned_cols=132  Identities=17%  Similarity=0.186  Sum_probs=96.3

Q ss_pred             cCceec---ccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          169 THTAYE---LLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       169 ~~~~~d---l~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      ..++.+   +|  ..++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+.....        ...
T Consensus         7 ~~~v~~~~~~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~--------~~~   75 (144)
T 2nyc_A            7 KIPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIY--------NDL   75 (144)
T ss_dssp             GSBGGGSSCCB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC------------C
T ss_pred             hcchhhcCCCC--CCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhccccc--------ccC
Confidence            345555   34  3578899999999999999999999999999964 899999999999876542100        001


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..++   .+.+...  ..      ..++++++.+++++.+|++.|.+++++++||++   ++|   +++|+||.+||++.
T Consensus        76 ~~~v---~~~m~~~--~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dil~~  138 (144)
T 2nyc_A           76 SLSV---GEALMRR--SD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD---DVG---RLVGVLTLSDILKY  138 (144)
T ss_dssp             CSBH---HHHHHHC--C------------CEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHHHH
T ss_pred             CccH---HHHHhcC--cc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC---CCC---CEEEEEEHHHHHHH
Confidence            1122   2222110  00      002678999999999999999999999999996   245   89999999999998


Q ss_pred             HHh
Q 013832          326 VCR  328 (435)
Q Consensus       326 l~~  328 (435)
                      +..
T Consensus       139 l~~  141 (144)
T 2nyc_A          139 ILL  141 (144)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.46  E-value=1.7e-13  Score=132.88  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=99.5

Q ss_pred             CccCCCCceEeCCCCCHHHHHHHHHhc-----CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccc
Q 013832          267 GKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK  341 (435)
Q Consensus       267 g~~~~~~~v~v~~~~sL~da~~~m~~~-----~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~  341 (435)
                      |.+|.++++++.+++++.+|++.|.++     +++++||++.   ++   +++|+||.+|+++.       .      ..
T Consensus       140 ~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~-------~------~~  200 (286)
T 2oux_A          140 GAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN-------D------DD  200 (286)
T ss_dssp             HHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS-------C------TT
T ss_pred             HHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcC-------C------CC
Confidence            557888999999999999999999998     8899999963   35   79999999999642       0      12


Q ss_pred             cccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       342 ~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                      .++.+++            .++++++++++++.+|+++|.+++++++||||++|+++|+||+.||+..+....
T Consensus       201 ~~v~~im------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          201 TLIADIL------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             SBHHHHS------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             CcHHHHc------------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            4444442            357889999999999999999999999999999999999999999999876543

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.43  E-value=9.8e-13  Score=136.31  Aligned_cols=122  Identities=15%  Similarity=0.273  Sum_probs=101.7

Q ss_pred             ccccCCCccCCCCceEeCCCCCHHHHHHHHHhc-----CCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCC
Q 013832          261 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS  335 (435)
Q Consensus       261 ~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~-----~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~  335 (435)
                      ......|.+|+++++++.+++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..      .   
T Consensus       152 ~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~------~---  216 (473)
T 2zy9_A          152 YEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA------D---  216 (473)
T ss_dssp             SCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS------C---
T ss_pred             CCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC------C---
Confidence            334445678999999999999999999999986     5899999963   35   79999999999752      0   


Q ss_pred             CccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          336 SLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       336 ~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                          ...++.++            |.++++++++++++.+|+++|.+++++.+||||++|+++|+||..||+..+.+.
T Consensus       217 ----~~~~v~di------------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          217 ----PRTRVAEI------------MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             ----TTSBGGGT------------SBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             ----CCCcHHHH------------hCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence                12444444            335889999999999999999999999999999999999999999999876553

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.43  E-value=1.3e-12  Score=120.57  Aligned_cols=131  Identities=17%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             HHHHHHHhh--ccCceecccCCCCCeEEeCCCccHHHHHHHHHHC---CCceeeeeeCCCCeEEEeeehHHHHHHHHHhc
Q 013832          159 SRHRVSVFL--STHTAYELLPESGKVVALDIDLPVKQAFHILYEQ---GISMAPLWDFSKARFVGVLSASDFILILRELG  233 (435)
Q Consensus       159 ~~~~i~~~l--~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~---~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~  233 (435)
                      .+..+...|  ...++.++|..  .+++++++.|+.+|++.|.++   ++..+||+|. .++++|+||..|++..     
T Consensus        41 e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~-----  112 (205)
T 3kxr_A           41 QRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH-----  112 (205)
T ss_dssp             HHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS-----
T ss_pred             HHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC-----
Confidence            344455544  46789999954  788999999999999999998   8999999996 4899999999998531     


Q ss_pred             cCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeE
Q 013832          234 NHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQL  313 (435)
Q Consensus       234 ~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~l  313 (435)
                       . ..        .++   +              .+|.++++++.+++++.+|++.|.+++++.+||+|   +.|   ++
T Consensus       113 -~-~~--------~~v---~--------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD---~~g---~l  159 (205)
T 3kxr_A          113 -E-PH--------EPL---I--------------SLLSEDSRALTANTTLLDAAEAIEHSREIELPVID---DAG---EL  159 (205)
T ss_dssp             -C-TT--------SBG---G--------------GGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC---TTS---BE
T ss_pred             -C-Cc--------chH---H--------------HHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc---CCC---eE
Confidence             1 00        011   1              13778889999999999999999999999999996   345   79


Q ss_pred             EEeeeHHhHHHHHHhhh
Q 013832          314 LHIASLSGILKCVCRYF  330 (435)
Q Consensus       314 vGiiT~~dIl~~l~~~~  330 (435)
                      +|+||..||++.+....
T Consensus       160 vGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          160 IGRVTLRAATALVREHY  176 (205)
T ss_dssp             EEEEEHHHHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHHHHH
Confidence            99999999999998654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.41  E-value=5.4e-13  Score=120.31  Aligned_cols=125  Identities=17%  Similarity=0.246  Sum_probs=99.7

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.++|.  .++++++++.|+.+|+++|.++++.++||+|.+ ++++|++|..|++..+......        ....++
T Consensus         9 ~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~--------~~~~~v   77 (184)
T 1pvm_A            9 MRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKK--------PDEVPI   77 (184)
T ss_dssp             CBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCC--------GGGSBG
T ss_pred             cCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccC--------cccCCH
Confidence            57788884  478899999999999999999999999999864 7999999999987644311000        000111


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                                       +.+|.++++++.+++++.+|+++|.+++++++||++.   .|   +++|+||..||++++..
T Consensus        78 -----------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           78 -----------------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PG---RVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             -----------------GGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TC---CEEEEEEHHHHTTTSCH
T ss_pred             -----------------HHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHHHHHh
Confidence                             1137778899999999999999999999999999962   35   79999999999877654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.37  E-value=1.7e-12  Score=136.41  Aligned_cols=120  Identities=13%  Similarity=0.150  Sum_probs=99.9

Q ss_pred             cCCCCceEeCCC-CCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccc
Q 013832          269 AFPRPLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  347 (435)
Q Consensus       269 ~~~~~~v~v~~~-~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l  347 (435)
                      +|.++++++.++ +++.+|+++|.+++++++||++.  +++   +++||||.+||++.+.....       ....+|.++
T Consensus       389 iM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~~V~~i  456 (527)
T 3pc3_A          389 LELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNR-------QQSDPAIKA  456 (527)
T ss_dssp             GCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCC-------CTTSBGGGG
T ss_pred             hCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccC-------cCCCcHHHH
Confidence            588999999999 99999999999999999999962  245   79999999999998875421       123455554


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC----CcEEEEEeHHHHHHHHhhcc
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----DSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~----g~lvGiis~~DI~~~~~~~~  414 (435)
                      +            .++++++.+++++.+|+++|.++++  +||||++    |+++||||+.||++.+.+..
T Consensus       457 m------------~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          457 L------------NKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             E------------ETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             h------------cCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            3            3688999999999999999977765  7999984    89999999999999887654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.31  E-value=7.4e-13  Score=141.97  Aligned_cols=134  Identities=14%  Similarity=0.092  Sum_probs=96.6

Q ss_pred             cCC--CCceEeCCCCCHHHHHHHHH-hcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC---------
Q 013832          269 AFP--RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS---------  336 (435)
Q Consensus       269 ~~~--~~~v~v~~~~sL~da~~~m~-~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~---------  336 (435)
                      +|+  ++++++.+++++.|+.+.|. +++.+++||+|+   ++   +++|+||.+|+++.+..........         
T Consensus       458 iM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~  531 (632)
T 3org_A          458 IMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVL  531 (632)
T ss_dssp             HCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC----------------
T ss_pred             HhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccceec
Confidence            477  88999999999999999999 799999999963   45   7999999999988765432111000         


Q ss_pred             --ccccccccccccCc-----------------ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q 013832          337 --LPILKLPICAIPVG-----------------TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  397 (435)
Q Consensus       337 --~~~~~~~v~~l~ig-----------------t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~l  397 (435)
                        ...+.+.+..+.-.                 .....+.+.|.++++++++++++.+|+++|.+++++++||| ++|++
T Consensus       532 ~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~l  610 (632)
T 3org_A          532 LDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKL  610 (632)
T ss_dssp             ---------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEE
T ss_pred             cCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEE
Confidence              00000011111000                 00112567888999999999999999999999999999999 68999


Q ss_pred             EEEEeHHHHHHH
Q 013832          398 LDIYCRSDITAL  409 (435)
Q Consensus       398 vGiis~~DI~~~  409 (435)
                      +|+||++||++.
T Consensus       611 vGIVT~~Dll~~  622 (632)
T 3org_A          611 VGIVEREDVAYG  622 (632)
T ss_dssp             EEEEEGGGTEEC
T ss_pred             EEEEehhhHHHH
Confidence            999999999754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.29  E-value=1.5e-11  Score=128.39  Aligned_cols=115  Identities=17%  Similarity=0.264  Sum_probs=97.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |..+++++.+++++.+|+++|.+++++++||+++. .++   +++|+||.+|++.      ..      ....++.+++ 
T Consensus       119 m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~~------~~~~~V~~vM-  181 (511)
T 3usb_A          119 VISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------IQ------DYSIKISDVM-  181 (511)
T ss_dssp             SSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------CC------CSSSBHHHHC-
T ss_pred             cccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------hc------cCCCcHHHhc-
Confidence            66788999999999999999999999999999631 135   8999999999953      01      1234555553 


Q ss_pred             cccccccCCCCCC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 GTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 gt~~~~~g~~~~~-~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 .+ +++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++.+..
T Consensus       182 -----------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          182 -----------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             -----------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                       23 78999999999999999999999999999999999999999999988765

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.28  E-value=1.2e-11  Score=119.74  Aligned_cols=130  Identities=22%  Similarity=0.322  Sum_probs=104.8

Q ss_pred             HHHHHHhhc--cCceecccCCCCCeEEeCCCccHHHHHHHHHHC-----CCceeeeeeCCCCeEEEeeehHHHHHHHHHh
Q 013832          160 RHRVSVFLS--THTAYELLPESGKVVALDIDLPVKQAFHILYEQ-----GISMAPLWDFSKARFVGVLSASDFILILREL  232 (435)
Q Consensus       160 ~~~i~~~l~--~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~-----~i~s~PV~D~~~~~~vGilT~~D~i~il~~~  232 (435)
                      +..+...+.  ..++.++|..  .++++.++.|+.+|++.|.++     ++..+||+|.+ ++++|+||..|++..    
T Consensus       125 ~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dll~~----  197 (286)
T 2oux_A          125 AGEIKELLHYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVN----  197 (286)
T ss_dssp             HHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTS----
T ss_pred             HHHHHHHhcCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHHHcC----
Confidence            444555553  4688899954  788999999999999999998     88889999964 899999999998641    


Q ss_pred             ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832          233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  312 (435)
Q Consensus       233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~  312 (435)
                        . .        ..++   .+              +|.++++++.+++++.+|++.|.+++++++||+|   +.|   +
T Consensus       198 --~-~--------~~~v---~~--------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd---~~g---~  243 (286)
T 2oux_A          198 --D-D--------DTLI---AD--------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD---YDD---H  243 (286)
T ss_dssp             --C-T--------TSBH---HH--------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTC---B
T ss_pred             --C-C--------CCcH---HH--------------HcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc---CCC---e
Confidence              0 0        1112   11              2667889999999999999999999999999996   346   8


Q ss_pred             EEEeeeHHhHHHHHHhhh
Q 013832          313 LLHIASLSGILKCVCRYF  330 (435)
Q Consensus       313 lvGiiT~~dIl~~l~~~~  330 (435)
                      ++|+||..||++.+....
T Consensus       244 lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          244 LLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             EEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEEHHHHHHHHHHHh
Confidence            999999999999987654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.26  E-value=1.6e-11  Score=128.99  Aligned_cols=129  Identities=14%  Similarity=0.159  Sum_probs=101.9

Q ss_pred             cCceecccCCCCCeEEeCCC-ccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          169 THTAYELLPESGKVVALDID-LPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~-~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ..++.|+|.  .++++++++ +|+.+|+++|.++++.++||+|.+.++++|+||..|++..+.......         ..
T Consensus       383 ~~~V~diM~--~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~---------~~  451 (527)
T 3pc3_A          383 SLAIAELEL--PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQ---------SD  451 (527)
T ss_dssp             TSBGGGGCC--CCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCT---------TS
T ss_pred             CCcHHHhCc--CCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcC---------CC
Confidence            467889995  478899999 999999999999999999999933589999999999988765432110         00


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCC-CCCCCCeEEEeeeHHhHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS-QDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~-~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      ++   .              .+|.++++++.+++++.+|+++|.++++  +||++++. ..|   +++||||..||++++
T Consensus       452 ~V---~--------------~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g---~lvGIVT~~Dll~~l  509 (527)
T 3pc3_A          452 PA---I--------------KALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV---ELKALATKLDVTTFI  509 (527)
T ss_dssp             BG---G--------------GGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE---EEEEEEEHHHHHHHH
T ss_pred             cH---H--------------HHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC---eEEEEEEHHHHHHHH
Confidence            11   1              1377899999999999999999987665  69997410 025   899999999999999


Q ss_pred             Hhhh
Q 013832          327 CRYF  330 (435)
Q Consensus       327 ~~~~  330 (435)
                      ..+.
T Consensus       510 ~~~~  513 (527)
T 3pc3_A          510 AAGK  513 (527)
T ss_dssp             HTCC
T ss_pred             Hhcc
Confidence            8653

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.25  E-value=1.2e-12  Score=134.29  Aligned_cols=163  Identities=23%  Similarity=0.326  Sum_probs=21.8

Q ss_pred             eeeeeeCCCCeEEEeeehHHHHHHHHHhccCC---CCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCC
Q 013832          205 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  281 (435)
Q Consensus       205 s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~---~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~  281 (435)
                      .+|++.+.    .--+|..++.-.+.+.+--+   .+++.++-.    ...+.++...      +|  |..+++++.|+.
T Consensus        92 ~iPlvSA~----MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa----~~V~~VKr~e------~g--~i~dPvtl~P~~  155 (556)
T 4af0_A           92 NTPFLSSP----MDTVTEDRMAIALALHGGLGIIHHNCSAEEQA----AMVRRVKKYE------NG--FITDPLCLGPDA  155 (556)
T ss_dssp             SSCEEECC----CTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH----HHHHHHHHCC------C---------------
T ss_pred             CCCEEecC----cccccCHHHHHHHHHCCCeEEEcCCCCHHHHH----HHHHHHHhcc------cC--ccCCCeEcCCCC
Confidence            36887642    22366677666666554211   355444311    1223333322      23  456789999999


Q ss_pred             CHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCC
Q 013832          282 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  361 (435)
Q Consensus       282 sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~  361 (435)
                      ++.||.++|.+++++.+||++....++   +|+||+|.+|+. +.     .       ...+|.++            |.
T Consensus       156 Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-----d-------~~~~V~ev------------MT  207 (556)
T 4af0_A          156 TVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-----D-------AETPIKSV------------MT  207 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-----c-------cceEhhhh------------cc
Confidence            999999999999999999997432345   899999999973 21     1       12445544            34


Q ss_pred             CCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          362 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       362 ~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                      ++++|++.+.++.+|.++|.++++..+||||++|+|+|+||+.|+.+...
T Consensus       208 ~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          208 TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             --------------------------------------------------
T ss_pred             cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            58999999999999999999999999999999999999999999987543

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.23  E-value=3.9e-11  Score=115.58  Aligned_cols=120  Identities=21%  Similarity=0.363  Sum_probs=98.1

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHC-----CCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhh
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQ-----GISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE  243 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~-----~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~  243 (435)
                      ..++.++|..  .++++.++.|+.+|++.|.++     ++..+||+|.+ ++++|+||..|++..      .. .     
T Consensus       134 ~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~------~~-~-----  198 (278)
T 2yvy_A          134 EDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA------DP-R-----  198 (278)
T ss_dssp             TTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEHHHHHHS------CT-T-----
T ss_pred             cchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-CCEEEEEEHHHHhcC------CC-C-----
Confidence            4688999954  788999999999999999997     79999999964 899999999998742      00 0     


Q ss_pred             hhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHH
Q 013832          244 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL  323 (435)
Q Consensus       244 l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl  323 (435)
                         .++                 +.+|.++++++.+++++.+|++.|.+++++.+||+|   +.|   +++|+||..||+
T Consensus       199 ---~~v-----------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~lvGivT~~Dil  252 (278)
T 2yvy_A          199 ---TRV-----------------AEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---EEG---RLVGIVTVDDVL  252 (278)
T ss_dssp             ---CBS-----------------TTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHH
T ss_pred             ---CcH-----------------HHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe---CCC---eEEEEEEHHHHH
Confidence               011                 113777889999999999999999999999999996   346   899999999999


Q ss_pred             HHHHhh
Q 013832          324 KCVCRY  329 (435)
Q Consensus       324 ~~l~~~  329 (435)
                      +.+...
T Consensus       253 ~~i~~e  258 (278)
T 2yvy_A          253 DVLEAE  258 (278)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            887654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.22  E-value=8.9e-11  Score=122.17  Aligned_cols=116  Identities=16%  Similarity=0.257  Sum_probs=97.4

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|..+++++.+++++.+|++.|.+++++++||++. .+++   +++|+||.+|+++.     ..       ...++.+  
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~-----~~-------~~~~v~~--  156 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI-----SD-------YNAPISE--  156 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC-----SC-------SSSBTTT--
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh-----cc-------CCCcHHH--
Confidence            37788999999999999999999999999999961 0234   79999999999742     00       1233333  


Q ss_pred             CcccccccCCCCCC-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~-~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                .|.+ +++++++++++.+++++|.+++++.+||||++|+++|++|+.||++.+..
T Consensus       157 ----------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          157 ----------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ----------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ----------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                      3445 78899999999999999999999999999999999999999999998774

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.18  E-value=7.6e-12  Score=130.13  Aligned_cols=112  Identities=18%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |..+++++.+++++.+|+++|.+++++++||+++   ++   +++||||.+|++.      ..      ....++.+++ 
T Consensus        95 m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~~------~~~~~v~diM-  155 (496)
T 4fxs_A           95 VVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------VT------DLTKSVAAVM-  155 (496)
T ss_dssp             -CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------CC------CTTSBGGGTS-
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------cc------cCCCcHHHHh-
Confidence            6788999999999999999999999999999963   35   8999999999851      11      1234455543 


Q ss_pred             cccccccCCCCC-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          350 GTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       350 gt~~~~~g~~~~-~-~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                 . + +++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       156 -----------~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~  208 (496)
T 4fxs_A          156 -----------TPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAES  208 (496)
T ss_dssp             -----------EEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CC
T ss_pred             -----------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhc
Confidence                       2 1 5889999999999999999999999999999999999999999998643

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.16  E-value=2.9e-12  Score=133.74  Aligned_cols=117  Identities=18%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|+++|.+++++++||++++...+   +++|+||.+||+..  ..         ....++.++  
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~~---------~~~~~V~di--  166 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--LT---------QTETKVSDM--  166 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--hc---------cccCcHHHH--
Confidence            667899999999999999999999999999996310015   79999999999753  10         112444444  


Q ss_pred             cccccccCCCCCCC--ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 gt~~~~~g~~~~~~--v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                |.++  ++++++++++.+|+++|.+++++.+||||++|+++|+||++||++.+..
T Consensus       167 ----------M~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          167 ----------MTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ----------hCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence                      3344  8899999999999999999999999999999999999999999987654

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.16  E-value=5.9e-12  Score=131.37  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=26.0

Q ss_pred             Cceecc-cCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          170 HTAYEL-LPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       170 ~~~~dl-~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      .+.+++ |.  .++++++++.|+.+|+++|.++++..+||+|.+  .++++|+||..|+...    ...         ..
T Consensus        96 V~~~e~gM~--~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~~~---------~~  160 (503)
T 1me8_A           96 VKNFKAGFV--VSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----LTQ---------TE  160 (503)
T ss_dssp             HHTTTC--------------------------------------------------------------------------
T ss_pred             hhhcccCcc--cCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----hcc---------cc
Confidence            344565 53  378899999999999999999999999999963  2799999999998642    000         00


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCC--ceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  324 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~--~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~  324 (435)
                      .   .+++              +|+++  ++++.+++++.+|+++|.+++++.+||+|+   +|   +++||||.+||++
T Consensus       161 ~---~V~d--------------iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~~Dil~  217 (503)
T 1me8_A          161 T---KVSD--------------MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD---DQ---HLRYIVFRKDYDR  217 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C---cHHH--------------HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEecHHHH
Confidence            0   1122              25555  899999999999999999999999999963   45   7999999999998


Q ss_pred             HHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q 013832          325 CVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  397 (435)
Q Consensus       325 ~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~l  397 (435)
                      .+......        ..+...+.+              -..+.. ....+.++.|.+.+++.+.|--.+|..
T Consensus       218 ~~~~~~~~--------~d~~~~l~v--------------~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~  267 (503)
T 1me8_A          218 SQVCHNEL--------VDSQKRYLV--------------GAGINT-RDFRERVPALVEAGADVLCIDSSDGFS  267 (503)
T ss_dssp             ----CCCC--------BCTTSCBCC--------------EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCS
T ss_pred             hhhcccch--------hcccccccc--------------ccccCc-hhHHHHHHHHHhhhccceEEecccCcc
Confidence            76532110        111111111              123445 667778899999999987663333433

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.16  E-value=1e-09  Score=114.47  Aligned_cols=173  Identities=16%  Similarity=0.182  Sum_probs=120.7

Q ss_pred             HHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC-CCeEEEeeehHHHHHHHHHhccCCC
Q 013832          159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS-KARFVGVLSASDFILILRELGNHGS  237 (435)
Q Consensus       159 ~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~-~~~~vGilT~~D~i~il~~~~~~~~  237 (435)
                      ....+++.++.   .+.|-  ..+++++++.|+.+|.++|.++++..+||+|+. +++++|+||..|+..     ...  
T Consensus       105 q~~~V~~V~~~---~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~-----~~~--  172 (511)
T 3usb_A          105 QAEQVDKVKRS---ESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF-----IQD--  172 (511)
T ss_dssp             HHHHHHHHHTS---SSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT-----CCC--
T ss_pred             HHHHHHHhhcc---ccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh-----hcc--
Confidence            33456666643   23442  367799999999999999999999999999961 479999999999842     110  


Q ss_pred             CCChhhhhhccHHHHHHHHHhhcccccCCCccCCC-CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEe
Q 013832          238 NLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPR-PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI  316 (435)
Q Consensus       238 ~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~-~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGi  316 (435)
                             ...++   ++.              |++ +++++.+++++.+|+++|.+++++.+||+|   ++|   +++|+
T Consensus       173 -------~~~~V---~~v--------------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD---e~g---~l~Gi  222 (511)
T 3usb_A          173 -------YSIKI---SDV--------------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD---NNG---VLQGL  222 (511)
T ss_dssp             -------SSSBH---HHH--------------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC---TTS---BEEEE
T ss_pred             -------CCCcH---HHh--------------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe---CCC---CEeee
Confidence                   01122   222              666 899999999999999999999999999996   356   89999


Q ss_pred             eeHHhHHHHHHhhhcccCCCccccccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC
Q 013832          317 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND  395 (435)
Q Consensus       317 iT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g  395 (435)
                      ||..||++.+......        ...-..+.              --..+.......+.++.|.+.++..+.|-..++
T Consensus       223 IT~~Dil~~~~~p~a~--------~D~~~rl~--------------V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          223 ITIKDIEKVIEFPNSA--------KDKQGRLL--------------VGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             EEHHHHHHHHHCTTCC--------BCTTSCBC--------------CEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             ccHHHHHHhhhcccch--------hhhcccee--------------eeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            9999999987531100        00000111              112344444456667788888998887655444

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.13  E-value=1.6e-11  Score=131.54  Aligned_cols=151  Identities=12%  Similarity=0.041  Sum_probs=101.1

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHH-HCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccC-CCCCCh-h--
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILY-EQGISMAPLWDFSKARFVGVLSASDFILILRELGNH-GSNLTE-E--  242 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~-~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~-~~~l~~-e--  242 (435)
                      ...++.|+|....+++++++++|+.+|.+.|. +++.+.+||+|+ +++++|++|.+|+.+.+...... ...... +  
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            45678889875468889999999999999999 799999999997 58999999999998754321100 000000 0  


Q ss_pred             -hhhhccHH-HHHHHHHh---------------hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCC
Q 013832          243 -ELETHTIS-AWKEGKAY---------------LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS  305 (435)
Q Consensus       243 -~l~~~~i~-~~~e~~~~---------------~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~  305 (435)
                       ..+...+. ..+.....               .....+....+|+++++++++++++.+|++.|.+++++++||++   
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve---  606 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE---  606 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE---
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE---
Confidence             00000000 00000000               00000112336889999999999999999999999999999994   


Q ss_pred             CCCCCCeEEEeeeHHhHHHHH
Q 013832          306 QDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       306 ~~g~~~~lvGiiT~~dIl~~l  326 (435)
                       +|   +++||||.+||++.+
T Consensus       607 -~G---~lvGIVT~~Dll~~~  623 (632)
T 3org_A          607 -RG---KLVGIVEREDVAYGY  623 (632)
T ss_dssp             -TT---EEEEEEEGGGTEECC
T ss_pred             -CC---EEEEEEehhhHHHHH
Confidence             35   899999999997543

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.12  E-value=1.1e-10  Score=125.32  Aligned_cols=79  Identities=24%  Similarity=0.413  Sum_probs=65.1

Q ss_pred             ceeeEEEEecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCe----eeCCC
Q 013832           24 VLIPMRFVWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF----ISSEY   98 (435)
Q Consensus        24 ~~~~~~f~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~----~~d~~   98 (435)
                      +...+.|.||.+|+.++|.|+||+|.+. .+|++   .++.|++++.||||.|+|||+|||+|..||.+|.    ..+++
T Consensus        15 ~~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~---~g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~   91 (645)
T 4aef_A           15 RVAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQ---EGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGY   91 (645)
T ss_dssp             EEEEEEEEEECCSSCEEEEETTTTTCTTSSEEEE---CSSEEEEEEEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGG
T ss_pred             eEEEEEEecCCCCeEEEEEEcCCCCCCCcccceE---cCCEEEEEEEeCCceEEEEEEECCeEecCCCCCCcccccccCc
Confidence            3577899999999999999999999975 46655   4689999999999999999999999999999973    34445


Q ss_pred             CCeeeEE
Q 013832           99 GIVNTVL  105 (435)
Q Consensus        99 G~~nnvl  105 (435)
                      +..+.+.
T Consensus        92 ~~~~~~~   98 (645)
T 4aef_A           92 KFHREVN   98 (645)
T ss_dssp             TEEEEEE
T ss_pred             Cccccee
Confidence            5544443

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.12  E-value=5.6e-12  Score=131.02  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |..+++++.+++++.+|+++|.+++++++||++    ++   +++||||.+|+... .           ....++.++  
T Consensus        94 m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~-~-----------~~~~~V~~v--  152 (490)
T 4avf_A           94 IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK-P-----------NAGDTVAAI--  152 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc-c-----------ccCCcHHHH--
Confidence            668889999999999999999999999999996    34   79999999998421 1           112444444  


Q ss_pred             cccccccCCCCC-C-CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          350 GTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       350 gt~~~~~g~~~~-~-~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                |. + +++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       153 ----------Mtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          153 ----------MTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             ----------hccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                      33 2 6899999999999999999999999999999999999999999998754

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.11  E-value=4.1e-10  Score=116.56  Aligned_cols=129  Identities=22%  Similarity=0.365  Sum_probs=103.6

Q ss_pred             HHHHHHhh--ccCceecccCCCCCeEEeCCCccHHHHHHHHHHC-----CCceeeeeeCCCCeEEEeeehHHHHHHHHHh
Q 013832          160 RHRVSVFL--STHTAYELLPESGKVVALDIDLPVKQAFHILYEQ-----GISMAPLWDFSKARFVGVLSASDFILILREL  232 (435)
Q Consensus       160 ~~~i~~~l--~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~-----~i~s~PV~D~~~~~~vGilT~~D~i~il~~~  232 (435)
                      +..+.+.+  ...++.++|..  .+++++++.|+.+|.+.|.++     ++..+||+|++ ++++|++|..|++..    
T Consensus       143 ~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~----  215 (473)
T 2zy9_A          143 RAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA----  215 (473)
T ss_dssp             HHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS----
T ss_pred             HHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC----
Confidence            34444444  35678889854  799999999999999999986     58999999964 899999999998641    


Q ss_pred             ccCCCCCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCe
Q 013832          233 GNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ  312 (435)
Q Consensus       233 ~~~~~~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~  312 (435)
                        .. .        .++   ++              +|.++++++.+++++.+|++.|.+++.+.+||+|   +.|   +
T Consensus       216 --~~-~--------~~v---~d--------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD---e~g---~  261 (473)
T 2zy9_A          216 --DP-R--------TRV---AE--------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---EEG---R  261 (473)
T ss_dssp             --CT-T--------SBG---GG--------------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC---TTS---B
T ss_pred             --CC-C--------CcH---HH--------------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc---CCC---E
Confidence              10 0        011   11              3778899999999999999999999999999996   346   8


Q ss_pred             EEEeeeHHhHHHHHHhh
Q 013832          313 LLHIASLSGILKCVCRY  329 (435)
Q Consensus       313 lvGiiT~~dIl~~l~~~  329 (435)
                      ++|+||.+||++.+...
T Consensus       262 lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          262 LVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             EEEEEEHHHHHHHHHHH
T ss_pred             EEEEEehHhhHHHHHHH
Confidence            99999999999988654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.10  E-value=8.3e-12  Score=130.08  Aligned_cols=114  Identities=17%  Similarity=0.302  Sum_probs=5.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|++.|.+++++.+||+|.   ++   +++|+||.+||++. .    .       ...++.++  
T Consensus       101 M~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~-~----~-------~~~~v~~i--  160 (494)
T 1vrd_A          101 IIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFE-K----N-------LSKKIKDL--  160 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhh-c----C-------CCCcHHHH--
Confidence            6788999999999999999999999999999963   35   79999999999752 0    0       12344443  


Q ss_pred             cccccccCCCCCC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          350 GTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       350 gt~~~~~g~~~~~--~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                                |.+  +++++.+++++.+|+++|.+++++.+||||++|+++|+||+.||++.+...
T Consensus       161 ----------m~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          161 ----------MTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             ----------------------------------------------------------CHHHHTCT
T ss_pred             ----------hCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence                      334  788999999999999999999999999999999999999999999987644

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.97  E-value=1.8e-11  Score=128.08  Aligned_cols=117  Identities=20%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|+++|.+++++.+||+|.+..++   +++|+||.+|+.+...          .....++.++  
T Consensus       114 m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~~v~~v--  178 (514)
T 1jcn_A          114 FITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHTTLLSEV--  178 (514)
T ss_dssp             SCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC--------------------------
T ss_pred             cccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCCCCHHHH--
Confidence            667888999999999999999999999999996310035   7999999999864210          0112334333  


Q ss_pred             cccccccCCCCCC--CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          350 GTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       350 gt~~~~~g~~~~~--~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                |.+  +++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++...
T Consensus       179 ----------m~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          179 ----------MTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             ----------hCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                      344  7889999999999999999999999999999999999999999987543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.94  E-value=5.4e-09  Score=108.66  Aligned_cols=117  Identities=19%  Similarity=0.282  Sum_probs=95.2

Q ss_pred             ecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeC-CCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH
Q 013832          173 YELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDF-SKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  251 (435)
Q Consensus       173 ~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~-~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~  251 (435)
                      .++|.  .++++++++.|+.+|.+.|.++++..+||+|. +.++++|+||..|++..     ... .        .++  
T Consensus        93 ~~im~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~~~-~--------~~v--  154 (491)
T 1zfj_A           93 ENGVI--IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----SDY-N--------API--  154 (491)
T ss_dssp             TTTTS--SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----SCS-S--------SBT--
T ss_pred             HhcCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----ccC-C--------CcH--
Confidence            45664  37889999999999999999999999999982 34899999999998642     100 0        011  


Q ss_pred             HHHHHHhhcccccCCCccCCC-CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          252 WKEGKAYLNRQIDSHGKAFPR-PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~~-~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                                     ..+|.+ +++++.+++++.++++.|.+++++.+||+|   +.+   +++|++|..||++.+..
T Consensus       155 ---------------~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd---~~g---~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          155 ---------------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD---NSG---RLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             ---------------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC---TTS---BEEEEEEHHHHHHHHHC
T ss_pred             ---------------HHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEEHHHHHHHHhc
Confidence                           113666 889999999999999999999999999996   346   89999999999998874

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.90  E-value=1.4e-10  Score=120.61  Aligned_cols=109  Identities=15%  Similarity=0.314  Sum_probs=0.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |..+++++.+++++.++++.|.+++++++||++.    +   +++|+||.+|++.   .           ...++.++  
T Consensus        99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~----~---~lvGivt~~Dl~~---~-----------~~~~v~~i--  155 (486)
T 2cu0_A           99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVED----E---KVVGIITKKDIAA---R-----------EGKLVKEL--  155 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHhcc---C-----------CCCCHHHH--
Confidence            6688999999999999999999999999999962    4   7999999999974   1           02334433  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                |.++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       156 ----------m~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          156 ----------MTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             ----------ccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                      3457889999999999999999999999999999999999999999998765

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.86  E-value=3.1e-09  Score=80.57  Aligned_cols=62  Identities=16%  Similarity=0.337  Sum_probs=49.6

Q ss_pred             ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccccCCCCCccHHHHH
Q 013832          364 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQVT  429 (435)
Q Consensus       364 v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l  429 (435)
                      ++++.|++++.+|+++|.+++++++||+| +|+++||+|.+||++.+..+..   ++.+.+|++++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~---~~~~~~V~~iM   63 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK---NPKEVKVEEIM   63 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC---CGGGCBGGGTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC---CcccCCHHHhc
Confidence            57899999999999999999999999998 5899999999999865433222   22346666654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.85  E-value=2e-09  Score=112.04  Aligned_cols=118  Identities=19%  Similarity=0.335  Sum_probs=6.2

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.++|.  .+++++.++.++.+|+++|.++++..+||+|++ ++++|+||..|+...     ..         ...   
T Consensus        96 ~~~~iM~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~-----~~---------~~~---  155 (494)
T 1vrd_A           96 KTENGII--YDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFE-----KN---------LSK---  155 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCc--cCCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhh-----cC---------CCC---
Confidence            3456664  378899999999999999999999999999964 799999999998641     00         000   


Q ss_pred             HHHHHHHhhcccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      .+++              +|.+  +++++.+++++.+|+++|.+++++.+||+|.   ++   +++|+||..||++.+..
T Consensus       156 ~v~~--------------im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          156 KIKD--------------LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK---DN---KLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -------------------------------------------------------------------------CHHHHTC
T ss_pred             cHHH--------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHhhhcc
Confidence            1122              2555  8899999999999999999999999999963   45   79999999999988753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.83  E-value=2.3e-09  Score=111.36  Aligned_cols=115  Identities=16%  Similarity=0.242  Sum_probs=1.6

Q ss_pred             eecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH
Q 013832          172 AYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  251 (435)
Q Consensus       172 ~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~  251 (435)
                      +.++|-  ..+++++++.|+.+|.++|.++++..+||+|  .++++|+||..|+...     ..         ...+   
T Consensus        90 ~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~-----~~---------~~~~---  148 (490)
T 4avf_A           90 HETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVK-----PN---------AGDT---  148 (490)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             cccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhc-----cc---------cCCc---
Confidence            455664  3678999999999999999999999999999  4799999999997421     00         0001   


Q ss_pred             HHHHHHhhcccccCCCccCC-C-CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          252 WKEGKAYLNRQIDSHGKAFP-R-PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~-~-~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      +++              +|+ + +++++.+++++.+|+++|.+++++.+||+|   ++|   +++|+||..||++...
T Consensus       149 V~~--------------vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---e~g---~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          149 VAA--------------IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD---ENF---YLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHH--------------HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEehHHhhhhcc
Confidence            112              255 3 689999999999999999999999999996   346   7999999999998653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.77  E-value=3.2e-09  Score=110.33  Aligned_cols=114  Identities=12%  Similarity=0.175  Sum_probs=79.5

Q ss_pred             ecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHH
Q 013832          173 YELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW  252 (435)
Q Consensus       173 ~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~  252 (435)
                      .++|.  ..+++++++.|+.+|.++|.++++..+||+|. +++++|+||..|+..     ... .        ...+   
T Consensus        92 ~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~~-----~~~-~--------~~~v---  151 (496)
T 4fxs_A           92 EAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVRF-----VTD-L--------TKSV---  151 (496)
T ss_dssp             CC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHTT-----CCC-T--------TSBG---
T ss_pred             ccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHhh-----ccc-C--------CCcH---
Confidence            45554  47789999999999999999999999999996 489999999999841     110 0        0111   


Q ss_pred             HHHHHhhcccccCCCccCC-C-CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          253 KEGKAYLNRQIDSHGKAFP-R-PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       253 ~e~~~~~~~~~~~~g~~~~-~-~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      ++              +|+ + +++++.+++++.+|+++|.+++++.+||+|   +.|   +++|+||..||++..
T Consensus       152 ~d--------------iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---e~G---~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          152 AA--------------VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN---DEF---QLKGMITAKDFHKAE  207 (496)
T ss_dssp             GG--------------TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC---TTS---BCCEEECCC-----C
T ss_pred             HH--------------HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEeehHhHHHHhh
Confidence            11              255 3 588999999999999999999999999996   356   799999999998764

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.75  E-value=1.1e-08  Score=77.48  Aligned_cols=47  Identities=17%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHH
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL  229 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il  229 (435)
                      |+++++++.|+.+|+++|.++++.++||.|.  ++++||+|.+|++..+
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKV   47 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHT
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHH
Confidence            5789999999999999999999999999984  7999999999987543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.74  E-value=5.8e-09  Score=108.30  Aligned_cols=155  Identities=17%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             CCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          180 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       180 ~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++++++.++.+|.++|.++++..+||+|.  ++++|+||..|++.      ..  .        .   .+++     
T Consensus       101 ~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~------~~--~--------~---~v~~-----  154 (486)
T 2cu0_A          101 EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA------RE--G--------K---LVKE-----  154 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc------CC--C--------C---CHHH-----
Confidence            57889999999999999999999999999996  79999999999863      10  0        0   1111     


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccc
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI  339 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~  339 (435)
                               +|.++++++.+++++.++++.|.+++++.+||+|   +.|   +++|++|.+||++.+...          
T Consensus       155 ---------im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd---e~g---~lvGiiT~~Dil~~~~~~----------  209 (486)
T 2cu0_A          155 ---------LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD---ERG---KLVGLITMSDLVARKKYK----------  209 (486)
T ss_dssp             -------------------------------------------------------------------CCT----------
T ss_pred             ---------HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe---cCC---eEEEEEEHHHHHHhhhcc----------
Confidence                     2566888999999999999999999999999996   345   799999999999874311          


Q ss_pred             cccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEE
Q 013832          340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDI  400 (435)
Q Consensus       340 ~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~-~g~lvGi  400 (435)
                        ....+ ..+.+.         --..+..++  .+.+..|.+.++..+ |+|. .|...++
T Consensus       210 --~~~~~-~~g~~~---------v~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~  256 (486)
T 2cu0_A          210 --NAVRD-ENGELL---------VAAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKA  256 (486)
T ss_dssp             --TCCBC-TTSCBC---------CEEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHH
T ss_pred             --ccccc-cCCcee---------ecceechhh--HHHHHHHHHhcCCce-EEEecCCcEeeh
Confidence              00000 011111         001233333  566788899999987 5653 4544443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.70  E-value=1.7e-09  Score=111.00  Aligned_cols=107  Identities=19%  Similarity=0.347  Sum_probs=0.0

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      .++++.++.||.+|..+|.++++..+||+|..  .++++||+|.+|+--      .        +..    ..+++    
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf------~--------d~~----~~V~e----  204 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF------Q--------DAE----TPIKS----  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc------c--------ccc----eEhhh----
Confidence            46899999999999999999999999999853  479999999999621      0        000    01122    


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                                +|+++++++....++.+|.++|.++++..+||+|.   ++   +|+|+||.+||++.
T Consensus       205 ----------vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~---~g---~LvGlIT~kDi~k~  255 (556)
T 4af0_A          205 ----------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS---NG---HLVSLVARSDLLKN  255 (556)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             ----------hcccceEEecCCCCHHHHHHHHHHccccceeEEcc---CC---cEEEEEEechhhhh
Confidence                      37788999999999999999999999999999973   45   79999999999864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.66  E-value=1e-08  Score=107.22  Aligned_cols=119  Identities=18%  Similarity=0.236  Sum_probs=66.2

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC--CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhcc
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS--KARFVGVLSASDFILILRELGNHGSNLTEEELETHT  248 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~--~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~  248 (435)
                      ++.++|..  +++++.++.++.+|.++|.+++++.+||+|..  .++++|+||..|+.....    .        .... 
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~----~--------~~~~-  173 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE----K--------DHTT-  173 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh----c--------cCCC-
Confidence            56677753  67799999999999999999999999999963  479999999999754210    0        0000 


Q ss_pred             HHHHHHHHHhhcccccCCCccCCC--CceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          249 ISAWKEGKAYLNRQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       249 i~~~~e~~~~~~~~~~~~g~~~~~--~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                        .+++              +|.+  +++++.+++++.+|+++|.+++++.+||+|.   +|   +++|+||.+||++.+
T Consensus       174 --~v~~--------------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          174 --LLSE--------------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND---CD---ELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS---SS---CCC----CCCCSSCC
T ss_pred             --CHHH--------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC---CC---eEEEEEEHHHHHHHh
Confidence              1111              2566  8899999999999999999999999999963   45   799999999997654

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.41  E-value=6.3e-07  Score=76.31  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=46.9

Q ss_pred             eeeEEEEecC---CCcEEEEEee---cCCCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           25 LIPMRFVWPY---GGRSVFLSGS---FNRWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        25 ~~~~~f~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      .+.++|.-..   .++.|+|+|+   +-+|++.  ++|.+.+  .....|++++.||+| .++|||++
T Consensus         8 ~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            8 PSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            4777777764   4799999999   9999974  5887751  157899999999998 79999998

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.41  E-value=3.3e-07  Score=85.88  Aligned_cols=56  Identities=34%  Similarity=0.483  Sum_probs=50.5

Q ss_pred             CCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          357 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       357 g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                      .+.|.++++++.+++++.+|+++|.+++++++||||++|+++|++|..||++.+..
T Consensus        10 ~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           10 EDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             GGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred             HHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            34455688999999999999999999999999999999999999999999987654

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=98.02  E-value=3.4e-06  Score=69.27  Aligned_cols=67  Identities=22%  Similarity=0.511  Sum_probs=49.7

Q ss_pred             eeeEEEEecC---CCcEEEEEeec---CCCCCC--CCCccccC--CCCeEEEEEEcCCc-eEEEEEEEC---C--eeecC
Q 013832           25 LIPMRFVWPY---GGRSVFLSGSF---NRWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCVD---G--EWRHD   88 (435)
Q Consensus        25 ~~~~~f~w~~---~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~VD---g--~w~~d   88 (435)
                      .+.++|.-.+   .|++|+|+|+.   -+|++.  ++|++...  .++.|++++.||+| .++|||++.   |  .|..+
T Consensus         6 ~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v~~~~g~~~WE~g   85 (108)
T 1ac0_A            6 AVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIRIESDDSVEWESD   85 (108)
T ss_dssp             CCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEECCSSSCCCCCCS
T ss_pred             eEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEEEcCCCCEEeccC
Confidence            3667777664   37999999985   589964  68877521  45899999999999 699999993   2  36555


Q ss_pred             CCC
Q 013832           89 EHQ   91 (435)
Q Consensus        89 ~~~   91 (435)
                      ++.
T Consensus        86 ~nR   88 (108)
T 1ac0_A           86 PNR   88 (108)
T ss_dssp             SCC
T ss_pred             CCE
Confidence            544

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=97.87  E-value=4.7e-05  Score=76.83  Aligned_cols=86  Identities=16%  Similarity=0.250  Sum_probs=65.5

Q ss_pred             eeeEEEEecCC-C-------cEEEEE--eecC---CCCCCCCCccccCCCCeEEEEEEcCCceE-EEEEEEC--------
Q 013832           25 LIPMRFVWPYG-G-------RSVFLS--GSFN---RWSELLPMSPVEGCPTVFQIIWSIPPGYH-QYKFCVD--------   82 (435)
Q Consensus        25 ~~~~~f~w~~~-~-------~~V~l~--Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g~~-~ykF~VD--------   82 (435)
                      ...|||.|..+ |       ++|+|.  |..+   +|.+ .+|+|. ...|+|+.+++||++-| .|.|+||        
T Consensus        30 ~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~-~~~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~~  107 (403)
T 3c8d_A           30 MFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRI-AGTDVWQWTTQLNANWRGSYCFIPTERDDIFSA  107 (403)
T ss_dssp             EEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEEC-TTSSEEEEEEEEETTCEEEEEEEEESCCSTTCC
T ss_pred             cEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccC-CCCCeEEEEEEECCCcEEEEEEEecCccccccc
Confidence            56899999876 5       799998  3222   2223 479885 35899999999999988 9999999        


Q ss_pred             ----------------CeeecCCCCCeeeCC-CCCeeeEEEecCCCC
Q 013832           83 ----------------GEWRHDEHQPFISSE-YGIVNTVLLATEPNF  112 (435)
Q Consensus        83 ----------------g~w~~d~~~~~~~d~-~G~~nnvl~v~~~~~  112 (435)
                                      |..+.||.||..... .|...|++.+.....
T Consensus       108 ~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~~~  154 (403)
T 3c8d_A          108 PSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPL  154 (403)
T ss_dssp             C--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTCCC
T ss_pred             ccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCCCc
Confidence                            778889999965543 488889999986533

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.30  E-value=0.00061  Score=72.52  Aligned_cols=66  Identities=26%  Similarity=0.454  Sum_probs=50.1

Q ss_pred             eEEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCee--ecCCCCCee
Q 013832           27 PMRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI   94 (435)
Q Consensus        27 ~~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V---Dg~w--~~d~~~~~~   94 (435)
                      .++| +|...|++|.|+|+|++|... ++|.+. ...|+|++.++ +.+|.+ |+|.|   ||.+  ..||-....
T Consensus        26 gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~-~~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~DPya~~~   99 (617)
T 1m7x_A           26 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKSDPYAFEA   99 (617)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTCE-EEEEEECTTSCEEEECCTTCSSE
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCCceeEeEEC-CCCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEecCccceee
Confidence            4566 477779999999999999754 689863 35799999997 778874 88888   6764  567666544

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=96.97  E-value=0.00092  Score=72.69  Aligned_cols=62  Identities=26%  Similarity=0.433  Sum_probs=47.5

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-------cCCceEEEEEEEC---Cee--ecCCCCC
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-------IPPGYHQYKFCVD---GEW--RHDEHQP   92 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~g~~~ykF~VD---g~w--~~d~~~~   92 (435)
                      ++| +|...|++|+|+|+|++|... ++|.+.  ..|+|++.++       +++|.+ |||.|+   |.|  +.||-..
T Consensus        67 v~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~--~~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           67 TIYREWAPAAQEAQLIGEFNNWNGAKHKMEKD--KFGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEECTTCSEEEEEEGGGTTCCTTCBCEEC--TTSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCceeeceeC--CCCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            555 487779999999999999864 799874  5799999998       778864 888885   455  3466443

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=96.82  E-value=0.0014  Score=70.76  Aligned_cols=65  Identities=35%  Similarity=0.634  Sum_probs=48.7

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE---CCee--ecCCCCCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEW--RHDEHQPFI   94 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V---Dg~w--~~d~~~~~~   94 (435)
                      ++| +|...|++|+|+|+||+|+.. .||.+. +..|+|++.++ +.+|. .|||.|   ||+|  +.||-....
T Consensus       138 ~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~  210 (722)
T 3k1d_A          138 VSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVL-GPSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGT  210 (722)
T ss_dssp             EEEEEECTTCSEEEEEEGGGTTCCCSCBCEEC-GGGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSB
T ss_pred             EEEEEECCCCCEEEEEeecCCCCCCcccCEEc-CCCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceee
Confidence            455 477779999999999999865 699874 24699999997 78884 577777   5654  567766543

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.77  E-value=0.0037  Score=50.50  Aligned_cols=64  Identities=16%  Similarity=0.308  Sum_probs=49.1

Q ss_pred             eeEEEEecCCCcEEEEEeecC--CCCCC--CCCccccCCCCeE-EEEEEcCCc-eEEEEEEECCe--eecCCCCC
Q 013832           26 IPMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVF-QIIWSIPPG-YHQYKFCVDGE--WRHDEHQP   92 (435)
Q Consensus        26 ~~~~f~w~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~-~~~~~L~~g-~~~ykF~VDg~--w~~d~~~~   92 (435)
                      -.+++.|..++++|+|...+.  +|...  ++|.+. .+++ | +.+++|+.| .++|+|. ||.  |-.+...-
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~-~~~g-w~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~N   76 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDA-EISG-YAKITVDIGSASQLEAAFN-DGNNNWDSNNTKN   76 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEE-TTTT-EEEEEEECTTCSCEEEEEE-CSSSCEESTTTSC
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCccccccc-cCCC-eEEEEEECCCCCEEEEEEe-CCCCcCcCCCCcc
Confidence            356778877899999999986  79875  578764 2345 6 699999976 9999995 874  88766553

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=96.19  E-value=0.024  Score=59.91  Aligned_cols=58  Identities=17%  Similarity=0.273  Sum_probs=45.6

Q ss_pred             ceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++++|.-.+   .|++|+|+|+-.   +|++.  ++|...+-  ++..|++++.||+| .++|||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            45778888765   389999999865   89975  57876420  13799999999998 79999998

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=95.96  E-value=0.019  Score=61.75  Aligned_cols=68  Identities=24%  Similarity=0.528  Sum_probs=51.7

Q ss_pred             CceeeEEEEecC-----CCcEEEEEeecC---CCCC--------CC-CCccccCCCCeEEEEEEcCCc-eEEEEEEE---
Q 013832           23 TVLIPMRFVWPY-----GGRSVFLSGSFN---RWSE--------LL-PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---   81 (435)
Q Consensus        23 ~~~~~~~f~w~~-----~~~~V~l~Gsf~---~W~~--------~~-~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V---   81 (435)
                      ...++++|.-.+     .|++|+|+|+-.   +|++        .+ +|...  ....|++++.||+| .++|||++   
T Consensus       579 ~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~--~~~~W~~~v~l~~~~~~eyKy~~~~~  656 (686)
T 1qho_A          579 GTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAP--NYPDWFYVFSVPAGKTIQFKFFIKRA  656 (686)
T ss_dssp             SSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCT--TTTSEEEEEEEETTCEEEEEEEEECT
T ss_pred             CCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccC--CCCcEEEEEEeCCCCeEEEEEEEEcC
Confidence            356788888764     478999999865   7998        35 77763  46799999999999 79999998   


Q ss_pred             CC--eeecCCCCC
Q 013832           82 DG--EWRHDEHQP   92 (435)
Q Consensus        82 Dg--~w~~d~~~~   92 (435)
                      +|  .|...++.-
T Consensus       657 ~~~~~We~~~nr~  669 (686)
T 1qho_A          657 DGTIQWENGSNHV  669 (686)
T ss_dssp             TSCEEECCSSCEE
T ss_pred             CCCEEeCCCCCee
Confidence            23  366655544

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.82  E-value=0.033  Score=59.82  Aligned_cols=69  Identities=23%  Similarity=0.467  Sum_probs=51.7

Q ss_pred             ceeeEEEEecC----CCcEEEEEeecC---CCCCC--C-CCccc-cCCCCeEEEEEEcCCc-eEEEEEEE---CC--eee
Q 013832           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV---DG--EWR   86 (435)
Q Consensus        24 ~~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~L~~g-~~~ykF~V---Dg--~w~   86 (435)
                      ..++++|.-..    .|+.|+|+||-.   +|++.  + +|... ......|++++.||+| .++|||++   +|  .|.
T Consensus       578 ~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~~~~~~~~~WE  657 (680)
T 1cyg_A          578 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIKKDSQGNVTWE  657 (680)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEEECTTSCEEEC
T ss_pred             CeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEEEeCCCCeEeC
Confidence            57889998865    489999999866   89975  5 67651 0246899999999988 99999998   33  365


Q ss_pred             cCCCCC
Q 013832           87 HDEHQP   92 (435)
Q Consensus        87 ~d~~~~   92 (435)
                      ..++..
T Consensus       658 ~g~Nr~  663 (680)
T 1cyg_A          658 SGSNHV  663 (680)
T ss_dssp             CSSCEE
T ss_pred             CCCCee
Confidence            554443

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.63  E-value=0.015  Score=61.37  Aligned_cols=60  Identities=8%  Similarity=-0.040  Sum_probs=46.2

Q ss_pred             CceeeEEE-EecCCCcEEEE-EeecCCCCC----CCCCcccc--CCCCeEEEEEEcCCceEEEEEEEC
Q 013832           23 TVLIPMRF-VWPYGGRSVFL-SGSFNRWSE----LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD   82 (435)
Q Consensus        23 ~~~~~~~f-~w~~~~~~V~l-~Gsf~~W~~----~~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~VD   82 (435)
                      ...+.++| +|...+++|.| .|+|++|..    .++|.+..  +..|+|++.++.....+.|||.|.
T Consensus        20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           20 ETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            45577777 47677999999 899999975    46998753  224579999998777789999884

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.33  E-value=0.031  Score=59.99  Aligned_cols=58  Identities=29%  Similarity=0.408  Sum_probs=46.7

Q ss_pred             ceeeEEEEecC----CCcEEEEEeecC---CCCCC--C-CCcccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++++|.-..    .|+.|+|+||-.   +|++.  + +|.... .....|++++.||+| .++|||++
T Consensus       582 ~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          582 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            57889998865    489999999976   89964  5 676510 246899999999998 99999998

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.04  E-value=0.044  Score=58.85  Aligned_cols=59  Identities=27%  Similarity=0.411  Sum_probs=46.7

Q ss_pred             CceeeEEEEecC----CCcEEEEEeecC---CCCCC--C-CCccc-cCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--L-PMSPV-EGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        23 ~~~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~-~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ...++++|.-..    .|+.|+|+||-.   +|++.  + +|... ......|++++.||.| .++|||++
T Consensus       584 ~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            357889998865    489999999866   89975  4 66641 0246899999999998 99999998

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=94.95  E-value=0.045  Score=56.71  Aligned_cols=58  Identities=12%  Similarity=0.175  Sum_probs=45.2

Q ss_pred             CceeeEEEEecC----CCcEEEEEeecC---CCCCCC---CCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           23 TVLIPMRFVWPY----GGRSVFLSGSFN---RWSELL---PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        23 ~~~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~~---~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ...++++|.-.+    .|++|+|+|+-.   +|++..   +|... ..++.|+++++||.| .++|||++
T Consensus       417 ~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~-~~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          417 VTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYD-SHSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             CCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEE-TTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             cCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccC-CCCCEEEEEEEECCCCcEEEEEEE
Confidence            345888888754    389999999865   799762   56542 234599999999998 79999998

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=94.89  E-value=0.014  Score=63.50  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCC-----CCCCccccCCCCeEEEEEE-cC------CceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IP------PGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~------~g~~~ykF~VDg~w   85 (435)
                      ++| +|...|++|.|++ |+.|..     .++|.+.  ..|+|++.++ +.      +|.|.|+|.|+|.|
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPA--GSGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEEC--STTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccC--CCCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            455 4777799999999 887653     3688764  4699999987 66      89989999999864

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=94.83  E-value=0.022  Score=60.23  Aligned_cols=61  Identities=23%  Similarity=0.408  Sum_probs=47.3

Q ss_pred             eEEE-EecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCee
Q 013832           27 PMRF-VWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFI   94 (435)
Q Consensus        27 ~~~f-~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~   94 (435)
                      .++| +|...|++|.|+|+   + ..++|.+.  ..|+|++.+++.+|.+ |+|.|||....||-....
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~--~~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~   96 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSL--GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFL   96 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEE--ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCC
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeC--CCcEEEEEEECCCCcE-EEEEECCeEecCCCcccc
Confidence            3555 47777999999994   2 35799875  3699999999888875 999999966778766544

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=94.71  E-value=0.016  Score=60.74  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=47.5

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-eecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-WRHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-w~~d~~~~~   93 (435)
                      ++| +|...|++|.|++.|+   ..++|.+.  ..|+|++.++ +.+|. .|||.|||. ...||-...
T Consensus        11 ~~f~vwap~a~~v~l~~~~~---~~~~m~~~--~~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~   73 (558)
T 3vgf_A           11 VIFTLWAPYQKSVKLKVLEK---GLYEMERD--EKGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRY   73 (558)
T ss_dssp             EEEEEECTTCSCCEEEETTT---EEEECEEC--TTCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEecC---ceeecccC--CCCEEEEEECCCCCCC-EEEEEEeCCccccCcchhh
Confidence            344 4777799999999997   45799885  4799999997 88885 699999996 777876643

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=94.71  E-value=0.022  Score=60.00  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             CCceeeEEEE-ecCCCcEEEE-EeecCCCCC------CCCCcccc--CCCCeEEEEEEcCCceEEEEEEEC
Q 013832           22 DTVLIPMRFV-WPYGGRSVFL-SGSFNRWSE------LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCVD   82 (435)
Q Consensus        22 ~~~~~~~~f~-w~~~~~~V~l-~Gsf~~W~~------~~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~VD   82 (435)
                      ....+.++|. |...+++|.| .|+|++|..      .++|.+.+  +..|+|++.++.....+.|+|.|+
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           19 DSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            3456778775 7677999999 799999965      47998753  124579999987777788888884

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=94.13  E-value=0.054  Score=57.92  Aligned_cols=53  Identities=17%  Similarity=0.304  Sum_probs=41.6

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC--CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE   84 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~   84 (435)
                      ++| +|...|++|.|++ |+++.  ..++|.+.  ..|+|++.++ +.+|.+ |+|.|+|.
T Consensus        21 ~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           21 VNFTLFSAHAERVELCV-FDANGQEHRYDLPGH--SGDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEECSSCSEEEEEE-ECTTCCEEEEECCEE--ETTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             EEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCC--CCCEEEEEECCCCCCCE-EEEEEeee
Confidence            555 4777799999999 98765  34789764  4699999986 778876 99999884

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=94.10  E-value=0.04  Score=59.52  Aligned_cols=54  Identities=17%  Similarity=0.376  Sum_probs=42.0

Q ss_pred             EEE-EecCCCcEEEEEeecCCCC-----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w   85 (435)
                      ++| +|...|++|.|++ |+.+.     ..++|.+.  ..|+|.+.++ +.+|.+ |+|.|+|.|
T Consensus        31 ~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~--~~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           31 VNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNK--TGDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEE--SSSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             EEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccC--CCCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            566 4777799999999 87644     23688764  4799999986 788987 999999864

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=92.92  E-value=0.14  Score=55.24  Aligned_cols=63  Identities=24%  Similarity=0.391  Sum_probs=45.2

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEE--CCee--ecCCCCCe
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGEW--RHDEHQPF   93 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V--Dg~w--~~d~~~~~   93 (435)
                      ++| +|...|++|.|++.|++|... ++|.+.  ..|+|++.++ +.+| ..|+|.|  +|.|  ..||-...
T Consensus       115 ~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~--~~g~w~~~v~~~~~g-~~Y~f~v~~~g~~~~~~DPya~~  184 (718)
T 2e8y_A          115 TVFKVWAPAATSAAVKLSHPNKSGRTFQMTRL--EKGVYAVTVTGDLHG-YEYLFCICNNSEWMETVDQYAKA  184 (718)
T ss_dssp             EEEEEECTTCSEEEEEEECTTSCCEEEECEEC--GGGEEEEEEESCCTT-CEEEEEEEETTEEEEECCTTCSS
T ss_pred             EEEEEECCCCCEEEEEEEcCCCcceEEeCccC--CCCEEEEEECCCCCC-CeEEEEEEeCCeEEEecCCcccc
Confidence            455 477779999999999988754 699875  3699999987 4566 3455655  5764  56776643

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=92.18  E-value=0.12  Score=58.23  Aligned_cols=65  Identities=15%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             EEEE-ecCCCcEEEEEe-ecCCCCCC-CCCccccCCCCeEEEEEE-cCCceEEEEEEEC------Ce----eecCCCCCe
Q 013832           28 MRFV-WPYGGRSVFLSG-SFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQPF   93 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~G-sf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD------g~----w~~d~~~~~   93 (435)
                      ++|. |...|++|.|++ +|++|... ++|.+. ...|+|++.++ +.+|.+ |+|.|+      |.    ...||-...
T Consensus       306 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~-~~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~~  383 (1083)
T 2fhf_A          306 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAHS  383 (1083)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEcCCCCccceEECeEC-CCCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccce
Confidence            4444 777799999999 89999753 689753 34699999985 778854 777774      33    366766643


Q ss_pred             e
Q 013832           94 I   94 (435)
Q Consensus        94 ~   94 (435)
                      .
T Consensus       384 ~  384 (1083)
T 2fhf_A          384 L  384 (1083)
T ss_dssp             B
T ss_pred             e
Confidence            3

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=91.11  E-value=0.17  Score=55.55  Aligned_cols=53  Identities=13%  Similarity=0.014  Sum_probs=37.3

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCCC--CCccccCCCCeEEEEEE-cCCceEEEEEEECC
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSELL--PMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG   83 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~--~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg   83 (435)
                      ++|. |...|++|.|++-+++|....  +|.+  +..|+|++.++ +.+|. .|+|.|++
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~--~~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLK--ESNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECE--EETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeec--CCCCEEEEEECCCCCCC-EEEEEEeC
Confidence            4555 777799999999666665542  2333  35799999987 56674 48888875

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=90.85  E-value=0.053  Score=57.04  Aligned_cols=59  Identities=15%  Similarity=0.256  Sum_probs=43.9

Q ss_pred             CceeeEEE-EecCCCcEEEE-EeecCCCCC---CCCCcccc--CCCCeEEEEEEcCCceEEEEEEE
Q 013832           23 TVLIPMRF-VWPYGGRSVFL-SGSFNRWSE---LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV   81 (435)
Q Consensus        23 ~~~~~~~f-~w~~~~~~V~l-~Gsf~~W~~---~~~m~~~~--~~~~~~~~~~~L~~g~~~ykF~V   81 (435)
                      ...+.++| +|...+++|.| .|+|++|..   .++|++..  +..|+|++.++.....+.|||.|
T Consensus        20 ~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i   85 (583)
T 1ea9_C           20 GTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLL   85 (583)
T ss_dssp             SSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCC
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEE
Confidence            34566666 47677999999 799999975   36898753  22467999998776677888877

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=90.71  E-value=0.046  Score=56.78  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             ceeeEEEEe-cC---CCcEEEEEeecC---CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVW-PY---GGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w-~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++++|.- .+   .|++|+|+||-.   +|++.  ++|... .....|++++.||+| .++|||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~-~~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDT-SGYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccC-CCCCeEEEEEEeCCCCcEEEEEEE
Confidence            457888886 32   489999999866   79974  678632 246789999999999 79999997

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=90.38  E-value=0.3  Score=51.88  Aligned_cols=50  Identities=12%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             cCCCcEEEEEeecCCCCC-CCCCcc--cc--CCCCeEEEEEEcCCceEEEEEEECC
Q 013832           33 PYGGRSVFLSGSFNRWSE-LLPMSP--VE--GCPTVFQIIWSIPPGYHQYKFCVDG   83 (435)
Q Consensus        33 ~~~~~~V~l~Gsf~~W~~-~~~m~~--~~--~~~~~~~~~~~L~~g~~~ykF~VDg   83 (435)
                      ...+++|.|++.|++ .. .++|.+  ..  +..|+|++.++....-..|+|.|+|
T Consensus        42 ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           42 DITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             cCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            345899999999874 32 378987  32  2348999999876666779999964

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=90.22  E-value=0.22  Score=45.52  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=41.3

Q ss_pred             CcEEEEEeecCCCCCC--CCCccccCCCCeEEEEEEcCCceEEEEEEECCeeec
Q 013832           36 GRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRH   87 (435)
Q Consensus        36 ~~~V~l~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~   87 (435)
                      .+++||+|++++|...  .+|.+....+|.|...+.|+.|. +|||.-+..|-.
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~~   64 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEYI   64 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCCB
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCccc
Confidence            5789999999998743  58887766789999999998775 899998766543

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.93  E-value=0.52  Score=52.27  Aligned_cols=60  Identities=27%  Similarity=0.512  Sum_probs=42.8

Q ss_pred             eeeEEEEecCCCcEEEEEeec-------CCCCCCC---CCccccCCCCeEEEEEEcCCceEEEEEEECCeee
Q 013832           25 LIPMRFVWPYGGRSVFLSGSF-------NRWSELL---PMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR   86 (435)
Q Consensus        25 ~~~~~f~w~~~~~~V~l~Gsf-------~~W~~~~---~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~   86 (435)
                      ++++..--......+.+.|+|       .+|++.-   -|.+.  .+|.|+.+-.||+|.|+||+.++|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~--~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKI--NPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEE--ETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccccchhhhccccccCCCCCCcceeecc--CCcceeeeeccCCcceeEEEeecCccc
Confidence            444444433445667888866       5788763   34333  378999999999999999999998773

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=89.89  E-value=0.29  Score=54.25  Aligned_cols=58  Identities=21%  Similarity=0.212  Sum_probs=41.5

Q ss_pred             EecCCCcEEEEEeecCCCC----CCCCCccccCCCCeEEEEEE-cCCceEEEEEEE--CCe--eecCCCCC
Q 013832           31 VWPYGGRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQP   92 (435)
Q Consensus        31 ~w~~~~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~V--Dg~--w~~d~~~~   92 (435)
                      +|...|++|.|++ |++|.    ..++|.+.  ..|+|++.++ +.+|. .|+|.|  +|.  +..||-..
T Consensus       331 vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~  397 (921)
T 2wan_A          331 VWAPTASNVQLLL-YNSEKGSITKQLEMQKS--DNGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYAR  397 (921)
T ss_dssp             EECTTCSEEEEEE-ESSSSSCCSEEEECEEC--GGGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCS
T ss_pred             EECCCCCEEEEEE-EeCCCCCcCeEEeCeeC--CCCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCcce
Confidence            4666799999997 99994    34799874  3699999987 55674 366665  565  45677554

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=89.87  E-value=0.66  Score=37.03  Aligned_cols=63  Identities=16%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             eEEEEecCCCcEEEEEeecC--CCCCC--CCCccccCCCCeEEEEEEcCCc-eEEEEEEECC--eeecCCCC
Q 013832           27 PMRFVWPYGGRSVFLSGSFN--RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDG--EWRHDEHQ   91 (435)
Q Consensus        27 ~~~f~w~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~VDg--~w~~d~~~   91 (435)
                      .+++.|..++.+|+|-=.+.  +|...  ++|.+. .+.|.|..+|+|+.+ .++|+| -||  .|-.+...
T Consensus        11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~-~~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A           11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKS-EXEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEEC-SSTTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCcccc-ccCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            34555557788888875565  37753  577663 368889999999975 899999 555  48764433

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=89.11  E-value=0.18  Score=55.47  Aligned_cols=64  Identities=16%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             EEEE-ecCCCcEEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEEcCCce-----EEEEEEEC--Ce--eecCCCCCe
Q 013832           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIPPGY-----HQYKFCVD--GE--WRHDEHQPF   93 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~~g~-----~~ykF~VD--g~--w~~d~~~~~   93 (435)
                      +.|. |...|++|.|++ ++++|..   .++|.+.  ..|+|++.+.+.||.     +.|+|.|+  |.  ...||-...
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKN--NKGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEEC--TTSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccC--CCCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            4554 777799999998 6888853   4799873  579999999876762     57788875  33  456776643

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=87.72  E-value=0.5  Score=50.87  Aligned_cols=64  Identities=11%  Similarity=0.112  Sum_probs=45.2

Q ss_pred             EEEE-ecCCCcEEEEEe-ecCCCCC---CCCCccccCCCCeEEEEEEcC--Cc-----eEEEEEEEC--Cee--ecCCCC
Q 013832           28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWSIP--PG-----YHQYKFCVD--GEW--RHDEHQ   91 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~--~g-----~~~ykF~VD--g~w--~~d~~~   91 (435)
                      ++|. |...|++|.|++ +|++|..   .++|.+.  ..|+|++.++-.  +|     -+.|+|.|+  |.+  ..||-.
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccC--CCCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            5564 777799999999 8988864   4789874  469999998731  34     156778775  543  467755


Q ss_pred             Ce
Q 013832           92 PF   93 (435)
Q Consensus        92 ~~   93 (435)
                      ..
T Consensus       104 ~~  105 (714)
T 2ya0_A          104 KS  105 (714)
T ss_dssp             SE
T ss_pred             ee
Confidence            43

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=83.41  E-value=1.3  Score=46.67  Aligned_cols=61  Identities=23%  Similarity=0.356  Sum_probs=44.5

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEEC-CeeecCCCCCeee
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD-GEWRHDEHQPFIS   95 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VD-g~w~~d~~~~~~~   95 (435)
                      ++|. |...|++|.|++   +|.. .||.+.  .+|.|++.++ +.+|. .|||.|+ |....||-.....
T Consensus        44 ~~F~vwap~a~~v~l~~---~~~~-~~m~~~--~~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           44 VRFRLWATGQQKVMLRL---AGKD-QEMQAN--GDGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEECTTCSCEEEEE---TTEE-EECEEC--STTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             EEEEEECCCCCEEEEEE---CCCc-ccCeec--CCEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            4554 677799999998   3544 699885  4689999885 77785 5888995 5577888765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	4e-25
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	9e-25
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-16
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-15
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	2e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	2e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	8e-04
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.002
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.002

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 96.1 bits (239), Expect = 4e-25
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 4/86 (4%)

Query: 27  PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
           P  F W  GG+ V+LSGSFN WS+     P+      F  I  +P G HQYKF VDG+W 
Sbjct: 3   PTVFRWTGGGKEVYLSGSFNNWSK----LPMTRSQNNFVAILDLPEGEHQYKFFVDGQWT 58

Query: 87  HDEHQPFISSEYGIVNTVLLATEPNF 112
           HD  +P ++S+ G VN ++   + +F
Sbjct: 59  HDPSEPIVTSQLGTVNNIIQVKKTDF 84

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 95.2 bits (236), Expect = 9e-25
 Identities = 21/87 (24%), Positives = 44/87 (50%)

Query: 23  TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
           ++++P+   W  GG  V+++GSF +W +++ + P       F +   + PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 83  GEWRHDEHQPFISSEYGIVNTVLLATE 109
            E R  +  P  + + G     +   +
Sbjct: 61  NELRVSDFLPTATDQMGNFVNYIEVRQ 87

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.5 bits (177), Expect = 7e-16
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 222
            + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 223 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 282
           +DFI IL            E  E    +  +       + +           V   PN +
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL-----------VCISPNAS 114

Query: 283 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 324
           L D    ++ N++  +P+I     D      L+I +   ILK
Sbjct: 115 LFDAVSSLIRNKIHRLPVI-----DPESGNTLYILTHKRILK 151

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 161 HRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVL 220
             +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L
Sbjct: 11  KEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLL 70

Query: 221 SASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 280
           + +DF+ +++      S           I+   + +    R+++    A P   +Y  P 
Sbjct: 71  TMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 123

Query: 281 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 331
            +L D    +  +    +P+I    + GS   ++ + +   ILK +    +
Sbjct: 124 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCK 173

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 257 AYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI 316
            ++++ ++         +        +       + + V+ +P++               
Sbjct: 5   EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD------------EK 52

Query: 317 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAA 376
             +  I             +   L + +          +        +       +L A 
Sbjct: 53  GRVVDIYSKFDVINLAAEKTYNNLDVSVT------KALQHRSHYFEGVLKCYLHETLEAI 106

Query: 377 LNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
           +N LV+A+V  + +VD++D +  I   SDI
Sbjct: 107 INRLVEAEVHRLVVVDEHDVVKGIVSLSDI 136

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS 334
           V   P D ++DV      +    +PI  +        +L+ I S   I            
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEEHDRFL 63

Query: 335 SSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 394
             +   +  +   P                       +L  A  +L +++   +PIV++N
Sbjct: 64  EEIMTKREDLVVAP--------------------AGITLKEANEILQRSKKGKLPIVNEN 103

Query: 395 DSLLDIYCRSDI 406
           D L+ I  R+D+
Sbjct: 104 DELVAIIARTDL 115

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 258 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 317
           +L   I          +        + DV + +    V++VPII    ++G    +    
Sbjct: 3   FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENGYLINVYEAY 59

Query: 318 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAAL 377
            + G++K         S    +++       V T                  +  LS  +
Sbjct: 60  DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT---------------CTKNDKLSTIM 104

Query: 378 NLLVQAQVSSIPIVDDNDSLLDIYCRSDI 406
           + + +A+V    +VDD   L+ +   SDI
Sbjct: 105 DNIRKARVHRFFVVDDVGRLVGVLTLSDI 133

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 16/147 (10%), Positives = 44/147 (29%), Gaps = 19/147 (12%)

Query: 272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF------------PQLLHIASL 319
           R +        LK   + +L +    +P++ S                    +++    L
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 320 SGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNL 379
           +   +       H +      +L +   PV            R + +  P  ++      
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEI-------MTRDVIVATPHMTVHEVALK 124

Query: 380 LVQAQVSSIPIVDDNDSLLDIYCRSDI 406
           + +  +  +P++     L+ +    D+
Sbjct: 125 MAKYSIEQLPVIRGEGDLIGLIRDFDL 151

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 26/136 (19%)

Query: 271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 330
              +V  GP+D++ +  +K+  + +  + ++      G                   R F
Sbjct: 12  GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVG---------------ILTERDF 56

Query: 331 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 390
                           +       ++ E   R +A +  + +    + L+ + +V  +P+
Sbjct: 57  SRK----------SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 391 VDDNDSLLDIYCRSDI 406
           +DD   ++ +    D+
Sbjct: 107 LDDGK-VIGLLSIGDL 121

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 274 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC 333
           L  A     + DV + +    +             + P +    +L  + + V       
Sbjct: 14  LATASMETKVYDVIKMLAEKNI------------SAVPIVNSEGTLLNVYESVDVMHLIQ 61

Query: 334 SSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD 393
                 L L +    +          N   +   R +  L    + +  ++V  + +VD+
Sbjct: 62  DGDYSNLDLSVGEALLKRP------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE 115

Query: 394 NDSLLDIYCRSDI 406
           N  L  I   +DI
Sbjct: 116 NLKLEGILSLADI 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.93
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.9
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.74
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.74
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.72
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.72
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.72
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.72
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.72
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.71
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.71
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.7
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.7
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.7
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.69
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.69
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.69
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.68
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.68
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.67
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.66
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.66
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.66
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.65
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.65
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.64
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.64
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.62
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.62
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.62
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.62
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.61
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.61
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.58
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.56
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.54
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.53
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.52
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.51
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.5
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.5
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.49
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.35
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.19
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.96
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.91
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.89
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.78
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.62
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.08
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.07
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	93.02
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	91.85

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=4.1e-28  Score=192.15  Aligned_cols=86  Identities=24%  Similarity=0.627  Sum_probs=80.3

Q ss_pred             ceeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCeee
Q 013832           24 VLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNT  103 (435)
Q Consensus        24 ~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nn  103 (435)
                      .+|||+|+|+++|++|+|+|||++|++..+|.+..+.+|.|+++++|+||.|+|||+|||+|++||++|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            36999999999999999999999999987776665668999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q 013832          104 VLLATE  109 (435)
Q Consensus       104 vl~v~~  109 (435)
                      +|.|++
T Consensus        82 vi~V~~   87 (87)
T d2qlvb1          82 YIEVRQ   87 (87)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            999975

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=4.3e-27  Score=185.95  Aligned_cols=84  Identities=45%  Similarity=0.935  Sum_probs=78.2

Q ss_pred             eeeEEEEecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeCCCCCeeeE
Q 013832           25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV  104 (435)
Q Consensus        25 ~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d~~G~~nnv  104 (435)
                      +.|++|+|+++|++|+|+|||++|++ .+|.+   ++|.|++++.||||.|+|||+|||+|++|+++|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~---~~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTR---SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEE---ETTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-ccccc---CCCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999987 57765   479999999999999999999999999999999999999999999


Q ss_pred             EEecCCCC
Q 013832          105 LLATEPNF  112 (435)
Q Consensus       105 l~v~~~~~  112 (435)
                      |.|.+.|.
T Consensus        77 i~V~~~D~   84 (87)
T d1z0na1          77 IQVKKTDF   84 (87)
T ss_dssp             EEECSCTT
T ss_pred             EEECCCcc
Confidence            99988765

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.93  E-value=4.1e-25  Score=197.62  Aligned_cols=168  Identities=22%  Similarity=0.427  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccC
Q 013832          156 LQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNH  235 (435)
Q Consensus       156 ~e~~~~~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~  235 (435)
                      ...+...+++||+.++|||+||.++++++++++.||.+|+++|.++++.++||||+++++++|+||..|++.++...+..
T Consensus         6 ~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~   85 (179)
T d2ooxe1           6 QKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQS   85 (179)
T ss_dssp             HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhcccc
Confidence            44578999999999999999999999999999999999999999999999999998778999999999999988765443


Q ss_pred             CC-CCChhhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEE
Q 013832          236 GS-NLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLL  314 (435)
Q Consensus       236 ~~-~l~~e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lv  314 (435)
                      .. .....++.......+.......        ..|.++++++.++++|.+|+..|.+++++++||+|.+++.+ ..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~vv  156 (179)
T d2ooxe1          86 SSFPEAIAEIDKFRLLGLREVERKI--------GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMIV  156 (179)
T ss_dssp             CSCGGGGGGGGGSBHHHHHHHHHHT--------TCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEEE
T ss_pred             ccchhhhhhhhccchhhhcccceee--------eecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcEE
Confidence            21 1112223333333333322221        13788999999999999999999999999999998543222 23799


Q ss_pred             EeeeHHhHHHHHHhhhcc
Q 013832          315 HIASLSGILKCVCRYFRH  332 (435)
Q Consensus       315 GiiT~~dIl~~l~~~~~~  332 (435)
                      ||+|++||+++|+.+++.
T Consensus       157 giiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         157 SVLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEEHHHHHHHHHTTCGG
T ss_pred             EEEeHHHHHHHHHHhhhH
Confidence            999999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.9e-23  Score=183.03  Aligned_cols=153  Identities=35%  Similarity=0.607  Sum_probs=123.8

Q ss_pred             HHHHhhccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCCh
Q 013832          162 RVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE  241 (435)
Q Consensus       162 ~i~~~l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~  241 (435)
                      .+.+||+.+||+|+||.+.++++++.++|+.+|++.|.++++.++||+|+++++++|+||..||+..+....... ....
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~-~~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSA-LVQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHH-TTTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccc-cchh
Confidence            578899999999999999999999999999999999999999999999987789999999999998876543211 0011


Q ss_pred             hhhhhccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832          242 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  321 (435)
Q Consensus       242 e~l~~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d  321 (435)
                      ..........+......          .|.++++++.|+++|.+|+++|.++++|++||+++  ++|   +++||||++|
T Consensus        84 ~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~GivT~~d  148 (159)
T d2v8qe2          84 YELEEHKIETWREVYLQ----------DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYILTHKR  148 (159)
T ss_dssp             CCGGGCBHHHHHHHHSS----------SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEECHHH
T ss_pred             hhhhhhhcccccceeee----------eeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEEeHHH
Confidence            11222223233222221          37789999999999999999999999999999963  456   7999999999


Q ss_pred             HHHHHHhhh
Q 013832          322 ILKCVCRYF  330 (435)
Q Consensus       322 Il~~l~~~~  330 (435)
                      |++++..+.
T Consensus       149 ilk~l~~~~  157 (159)
T d2v8qe2         149 ILKFLKLFI  157 (159)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHc
Confidence            999998764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=2.6e-18  Score=144.45  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=94.8

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |..+++++.|++++.+|+++|.+++++++||+|+ ..++   +++|++|.+||++....            ..+....  
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~~~~--   64 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPISEH--   64 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBTTTS--
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCceeee--
Confidence            4466789999999999999999999999999973 2245   79999999999653211            1111111  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                               .+..+++++++++++.+|+++|.+++++++||||++|+++|+||++||++....
T Consensus        65 ---------~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          65 ---------MTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             ---------CCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ---------eeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                     123578899999999999999999999999999999999999999999987653

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=3.6e-18  Score=146.62  Aligned_cols=123  Identities=14%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|.++++++.+++++.+|++.|.+++++.+||+++   +|   +++|++|.+|+++.+......      ....++++  
T Consensus         8 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~---~~~Giit~~di~~~~~~~~~~------~~~~~v~~--   73 (142)
T d1pvma4           8 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNKK------PDEVPIRL--   73 (142)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCCC------GGGSBGGG--
T ss_pred             hCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc---CC---cccceEEeechhhhhhhhccc------cccccccc--
Confidence            48889999999999999999999999999999963   45   799999999998776543211      11223333  


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY  415 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~  415 (435)
                                .|.++++++++++++.+|+++|.+++++++||||++|+++|+||+.||++.+.+...
T Consensus        74 ----------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~~~~  130 (142)
T d1pvma4          74 ----------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI  130 (142)
T ss_dssp             ----------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHHHH
T ss_pred             ----------ccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhhhhh
Confidence                      345689999999999999999999999999999999999999999999986655433

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=7.3e-18  Score=141.77  Aligned_cols=117  Identities=21%  Similarity=0.331  Sum_probs=101.4

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .|+++++++.+++++.+|+++|.+++++++||++    ++   +++|++|..|+++++.....        ...++.++ 
T Consensus         9 ~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~-   72 (127)
T d2ef7a1           9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAEEF-   72 (127)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGGGT-
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec----cc---chhhhcchhHHHHHHHhhcc--------ccchhhhh-
Confidence            4889999999999999999999999999999996    24   79999999999998875421        12444444 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 +.++++++++++++.+|+++|.+++++++||||++|+++|+||++||++.+.+
T Consensus        73 -----------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          73 -----------MTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             -----------SEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             -----------hhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence                       23578899999999999999999999999999999999999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.74  E-value=4.7e-18  Score=143.18  Aligned_cols=116  Identities=16%  Similarity=0.225  Sum_probs=98.7

Q ss_pred             CccCCCCceEeCCCCCHHHHHHHHHhcC-----CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccc
Q 013832          267 GKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK  341 (435)
Q Consensus       267 g~~~~~~~v~v~~~~sL~da~~~m~~~~-----v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~  341 (435)
                      |.+|.++++++.++.++.+|++.|.+++     ++.+||+|.   .+   +++|+++.++++..             ...
T Consensus         4 G~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~---~l~G~v~~~~l~~~-------------~~~   64 (127)
T d2ouxa2           4 GAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVN-------------DDD   64 (127)
T ss_dssp             HHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTS-------------CTT
T ss_pred             hHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CC---eEEEEEEeeccccc-------------ccc
Confidence            5579999999999999999999998874     789999973   45   79999999888521             012


Q ss_pred             cccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          342 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       342 ~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      .+++++            |.++++++++++++.+|+++|.+++++++||||++|+|+|+||..||+.++.+.
T Consensus        65 ~~v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          65 TLIADI------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             SBHHHH------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             EEhhhh------------ccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            445444            346888999999999999999999999999999999999999999999988764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1.2e-17  Score=143.25  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=101.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|..+++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|.+||++++....................+.
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            47888999999999999999999999999999973   45   8999999999999987654322110000111111110


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                      ..    .+++.+ ++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.++
T Consensus        83 ~~----~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          83 AK----NASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             SC----BHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cc----CHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            00    011122 3557899999999999999999999999999999999999999999987654

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=8.3e-18  Score=143.69  Aligned_cols=125  Identities=18%  Similarity=0.289  Sum_probs=101.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC-ccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS-LPILKLPICAI  347 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~-~~~~~~~v~~l  347 (435)
                      +|+++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|.+|+++++.......... ......++.+ 
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE-   79 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHHHCC---------CCCBHHH-
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHHHHhhhhhhhcccccccccchhH-
Confidence            47889999999999999999999999999999963   45   8999999999999887654322110 0111233333 


Q ss_pred             cCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          348 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       348 ~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 .|.++++++++++++.+|+++|.+++++++||+| +|+++|+||++||++.+.+
T Consensus        80 -----------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          80 -----------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             -----------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred             -----------hhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                       3456899999999999999999999999999999 5899999999999987664

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=4e-18  Score=146.74  Aligned_cols=119  Identities=15%  Similarity=0.268  Sum_probs=100.2

Q ss_pred             CCCccCCCCceEeCCCCCHHHHHHHHHhcC-----CcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccc
Q 013832          265 SHGKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI  339 (435)
Q Consensus       265 ~~g~~~~~~~v~v~~~~sL~da~~~m~~~~-----v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~  339 (435)
                      ..|.+|+++++++.+++|+.+|+++|.+++     ++.+||++   ++|   +++|+++.+||+...             
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~dl~~~~-------------   62 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDLIVAD-------------   62 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC---TTC---BBCCBCBHHHHTTSC-------------
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEec---CCC---CEecccchhhhhhcc-------------
Confidence            457789999999999999999999998774     78999996   356   899999999985310             


Q ss_pred             cccccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcc
Q 013832          340 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA  414 (435)
Q Consensus       340 ~~~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~  414 (435)
                      ...++.            +.|.++++++.+++++.+|+++|.+++++++||||++|+|+|+||+.||++++....
T Consensus        63 ~~~~v~------------~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2          63 PRTRVA------------EIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             TTCBST------------TTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHH
T ss_pred             cccchH------------HhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHh
Confidence            112333            334578999999999999999999999999999999999999999999999876643

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=3.5e-18  Score=142.94  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=95.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|.+||++.+..+...      .....++++  
T Consensus         7 M~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~------~~~~~v~~i--   72 (123)
T d1y5ha3           7 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD------PNTATAGEL--   72 (123)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC------TTTSBHHHH--
T ss_pred             cCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCC------cccceEEEE--
Confidence            7788999999999999999999999999999963   45   899999999998765443211      111223333  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                                |.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus        73 ----------m~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          73 ----------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             ----------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             ----------eeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence                      346889999999999999999999999999998 5899999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.72  E-value=2e-19  Score=150.22  Aligned_cols=117  Identities=23%  Similarity=0.299  Sum_probs=60.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.|++++.+|+++|.+++++++||+++....+   +++||+|.+|+.......          +..++...+.
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~~~   68 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEIMT   68 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------CCS
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEEEe
Confidence            446667999999999999999999999999997422345   899999999985332221          1223333321


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                                +..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.
T Consensus        69 ----------~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          69 ----------KREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ----------BTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ----------eccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                      12478899999999999999999999999999999999999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.72  E-value=3.1e-17  Score=137.96  Aligned_cols=113  Identities=15%  Similarity=0.314  Sum_probs=94.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      ++++++.+++++.+|+++|.+++++++||++    ++   +++|++|.+||++.+.....      .....++.+     
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~----~~---~~vGiit~~Di~~~~~~~~~------~~~~~~v~~-----   74 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQVKE-----   74 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBGGG-----
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEccchhhhhhhhcc------cccceeEee-----
Confidence            6789999999999999999999999999995    24   79999999999876643211      112233333     


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                             .|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+
T Consensus        75 -------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          75 -------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             -------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             -------eccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                   3456899999999999999999999999999998 68999999999999754

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=7.3e-18  Score=146.43  Aligned_cols=136  Identities=13%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC------ccccc-
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS------LPILK-  341 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~------~~~~~-  341 (435)
                      +|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++.+..........      ..... 
T Consensus         9 ~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
T d2yzqa1           9 YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILE   82 (156)
T ss_dssp             TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGGGCGGGCC------------------
T ss_pred             HhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC---CC---CceeEEeeeechhhhcccccccccccccchhhhhhhh
Confidence            58899999999999999999999999999999963   45   7999999999986544321110000      00000 


Q ss_pred             ----cccccccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          342 ----LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       342 ----~~v~~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                          ..............+++.|.++++++.++++|.+|+++|.+++++++||||++|+++|++|++||++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          83 SHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             --------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred             hhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence                000000000011124567788999999999999999999999999999999999999999999998753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.72  E-value=1.7e-17  Score=141.55  Aligned_cols=125  Identities=12%  Similarity=0.187  Sum_probs=103.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |+++++++.+++|+.+|+++|.+++++++||++.   ++   +++|++|..|+++++......... ......+++++  
T Consensus         8 Mt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~~~v~~i--   78 (141)
T d3ddja1           8 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYGKVVKDV--   78 (141)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHTCBHHHH--
T ss_pred             CcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccCCCHHHH--
Confidence            7889999999999999999999999999999963   34   799999999999988765332110 11123344443  


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                                |.++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+.
T Consensus        79 ----------m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          79 ----------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             ----------SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             ----------hCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence                      346889999999999999999999999999999999999999999999877654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.1e-17  Score=140.07  Aligned_cols=124  Identities=18%  Similarity=0.204  Sum_probs=96.2

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .+..+++++.+++++.+|++.|.+++++++||++   ++|   +++|++|.+|+++++........      ...+....
T Consensus        14 ~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~~~   81 (140)
T d2nyca1          14 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGEAL   81 (140)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----C------CSBHHHHH
T ss_pred             ccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe---cCC---eEcceehhhHHHHHHhhcccccc------ccchhhhh
Confidence            4678999999999999999999999999999996   345   79999999999999876533211      11111110


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  410 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~  410 (435)
                      .      ....+..+++++++++++.+|+++|.+++++++||||++|+++|+||++||++.+
T Consensus        82 ~------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          82 M------RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             H------HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             h------hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            0      0112235788999999999999999999999999999999999999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=6.3e-17  Score=136.93  Aligned_cols=118  Identities=18%  Similarity=0.318  Sum_probs=99.6

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|+++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..||++.+.....       .+..+++++ 
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~-------~~~~~v~~i-   75 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDIPVERI-   75 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTSBGGGT-
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccC-------ccceeEeec-
Confidence            48899999999999999999999999999999963   45   79999999999987654311       123444444 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 |.++++++.+++++.+|+++|.+++++++||++ +|+++|+||++||++...+
T Consensus        76 -----------m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          76 -----------MTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             -----------CBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             -----------ccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                       346889999999999999999999999999876 6899999999999987654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=4.1e-18  Score=144.51  Aligned_cols=123  Identities=19%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC---ccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS---LPILKLPIC  345 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~---~~~~~~~v~  345 (435)
                      +|.++++++.+++++.+|++.|.+++++++||++.        +++|++|..++++++..........   ......+  
T Consensus         6 lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--------~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   75 (135)
T d3ddja2           6 LMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--------KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTP--   75 (135)
T ss_dssp             TCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--------SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSB--
T ss_pred             EeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--------ceeceeeccchhhhhccccccchhhhhccccccCC--
Confidence            47778889999999999999999999999999952        5999999999998765432211100   0001122  


Q ss_pred             cccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          346 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       346 ~l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                                +++.|.++++++++++++.+|+++|.+++++++||||++|+++|+||++||+++++
T Consensus        76 ----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          76 ----------IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             ----------GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ----------HHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence                      34445678999999999999999999999999999999999999999999997554

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=3.1e-17  Score=138.78  Aligned_cols=130  Identities=18%  Similarity=0.208  Sum_probs=105.2

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .||.++|..+.+|++++++.|+.+|+++|.+++++++||+|++ ++++|++|..|++..+....    ....+.....++
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~----~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLE----RIEFEKLDQITV   76 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSS----SBCGGGTTTSBH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhccc----cccccccccccc
Confidence            5788888888999999999999999999999999999999964 89999999999987664221    111223333333


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                      ..                 +|.++++++.+++++.+|+.+|.+++  .+||+|+   +|   +++||||.+||++++.++
T Consensus        77 ~~-----------------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~---~~---~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          77 EE-----------------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND---EQ---VFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             HH-----------------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT---TC---BEEEEEEHHHHHHHHHHH
T ss_pred             cc-----------------cccccccccccchhHHHHHHHHHhCC--EEEEEcc---CC---EEEEEEEHHHHHHHHHhh
Confidence            22                 26788999999999999999998765  5999963   45   799999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.70  E-value=7.3e-17  Score=134.24  Aligned_cols=114  Identities=16%  Similarity=0.282  Sum_probs=97.7

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|+++++++.+++|+.+|++.|.+++++.+||.+    +|   +++|++|.+||++++.....       ....++.++ 
T Consensus         5 iM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~----~~---~~~Gvit~~Di~~~l~~~~~-------~~~~~v~~~-   69 (120)
T d1pbja3           5 VMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEV-   69 (120)
T ss_dssp             HCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHH-
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe----CC---cEEEEEEeeecccccccccc-------ccceeEeee-
Confidence            3889999999999999999999999999999985    25   79999999999998876421       122344444 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                                 |.++++++++++++.+|+++|.+++++++||+| +|+++|++|++||+++
T Consensus        70 -----------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          70 -----------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             -----------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             -----------cccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                       346889999999999999999999999999987 6899999999999975

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.70  E-value=9.1e-17  Score=139.43  Aligned_cols=136  Identities=10%  Similarity=0.068  Sum_probs=104.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccc--c--
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP--I--  344 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~--v--  344 (435)
                      +|+++++++.+++++.+|+++|.+++++++||++.. +++   .++|++|..|+++.+.........  ......  .  
T Consensus        16 iM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~-~~~---~lvg~is~~dl~~~l~~~~~~~~~--~~~~~~~~~~~   89 (160)
T d2d4za3          16 IMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTN---TLLGSIDRTEVEGLLQRRISAYRR--QPFEEMLTLEE   89 (160)
T ss_dssp             SSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHHHHHHHHTTSS--SCCCSCCBHHH
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHhcCCCcccccccc-ccc---cccccchHHHHHHHHhhccccccc--cchhhccccch
Confidence            689999999999999999999999999999999742 334   799999999999998865432111  000000  0  


Q ss_pred             -cc---ccCcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          345 -CA---IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       345 -~~---l~igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                       ..   .........+++.+.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          90 IYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence             00   0000011123556778999999999999999999999999999998 699999999999998764

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.2e-16  Score=136.47  Aligned_cols=133  Identities=17%  Similarity=0.227  Sum_probs=99.8

Q ss_pred             cCceecc-cCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          169 THTAYEL-LPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       169 ~~~~~dl-~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ..++.|+ +..+.++++++++.|+.+|+++|.+++++++||+|++ ++++|+||..|++.++..........        
T Consensus         5 ~~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~--------   75 (140)
T d2nyca1           5 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSL--------   75 (140)
T ss_dssp             GSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCS--------
T ss_pred             cCcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhcccccccc--------
Confidence            3667776 4556789999999999999999999999999999964 79999999999998776432211000        


Q ss_pred             cHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          248 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       248 ~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      .+.......           ..+..+++++.+++++.+|+++|.+++++++||+|   +.|   +++|+||.+||++++.
T Consensus        76 ~~~~~~~~~-----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd---~~~---~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          76 SVGEALMRR-----------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD---DVG---RLVGVLTLSDILKYIL  138 (140)
T ss_dssp             BHHHHHHHC-----------C------CEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHHHHHH
T ss_pred             chhhhhhhh-----------hhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe---CCC---eEEEEEEHHHHHHHHh
Confidence            111111000           01456788999999999999999999999999996   346   8999999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=1.5e-16  Score=135.78  Aligned_cols=133  Identities=13%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .++.|+|.  .++++++++.|+.+|++.|.+++++.+||+|++ ++++|+||..|++..+.......... .......++
T Consensus         2 i~v~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~-~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMT--RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQG-DSLAFETPL   77 (139)
T ss_dssp             CBGGGTSE--ESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC----------CCCBH
T ss_pred             EEHHHhCc--CCCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcc-cccccccch
Confidence            36778884  478899999999999999999999999999964 89999999999998776543321100 001111122


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                      +.                 +|.++++++.+++++.+|+++|.+++++++||++    +|   +++|+||.+||++++...
T Consensus        78 ~~-----------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd----~~---~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          78 FE-----------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA----KD---VLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             HH-----------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE----TT---EEEEEECHHHHHHHHHHH
T ss_pred             hH-----------------hhccccccccccchHHHHHHHHHHcCceEEEEEE----CC---EEEEEEEHHHHHHHHHHH
Confidence            11                 2778999999999999999999999999999996    25   799999999999998765


Q ss_pred             h
Q 013832          330 F  330 (435)
Q Consensus       330 ~  330 (435)
                      .
T Consensus       134 ~  134 (139)
T d2o16a3         134 L  134 (139)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=3e-17  Score=138.88  Aligned_cols=121  Identities=8%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCc
Q 013832          271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  350 (435)
Q Consensus       271 ~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ig  350 (435)
                      ..+++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+||++++........  ......+++++   
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~~~~~~~~~~--~~~~~~~v~~~---   79 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNSIFGLERIEF--EKLDQITVEEV---   79 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHHHBCSSSBCG--GGTTTSBHHHH---
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHHhhccccccc--ccccccccccc---
Confidence            568899999999999999999999999999963   45   89999999999999875432211  11112333333   


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhc
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  413 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~  413 (435)
                               |.++++++.+++++.+|+.+|.+++  .+||||++|+++|+||++||++.+.++
T Consensus        80 ---------m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          80 ---------MLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             ---------SBCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ---------ccccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence                     3468899999999999999998765  599999999999999999999887653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=2.4e-17  Score=137.80  Aligned_cols=121  Identities=20%  Similarity=0.303  Sum_probs=97.0

Q ss_pred             CceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       170 ~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      .||.|+|.  .++++++++.++.+|++.|.+++++++||+|++ ++++|+||..|++..+......        .....+
T Consensus         1 tt~~diM~--~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~--------~~~~~v   69 (123)
T d1y5ha3           1 TTARDIMN--AGVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLD--------PNTATA   69 (123)
T ss_dssp             CCHHHHSE--ETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCC--------TTTSBH
T ss_pred             CCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCC--------cccceE
Confidence            36778884  478899999999999999999999999999964 7999999999987533211111        011111


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                         ++              +|.++++++.+++++.+|+++|.+++++++||++    ++   +++|+||..||+++
T Consensus        70 ---~~--------------im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd----~~---~lvGiit~~Dil~~  121 (123)
T d1y5ha3          70 ---GE--------------LARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS----EH---RLVGIVTEADIARH  121 (123)
T ss_dssp             ---HH--------------HHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHT
T ss_pred             ---EE--------------EeeccceeeeecchHHHHHHHHHHcCceEEEEEE----CC---EEEEEEEHHHHHhh
Confidence               11              2668899999999999999999999999999996    24   79999999999875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=1.9e-17  Score=143.73  Aligned_cols=148  Identities=18%  Similarity=0.229  Sum_probs=101.1

Q ss_pred             ccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCC-CCChhhhhh
Q 013832          168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGS-NLTEEELET  246 (435)
Q Consensus       168 ~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~-~l~~e~l~~  246 (435)
                      ++.++-++|  +..++++.+++|+.+|+++|.+++++++||+|+ +|+++|++|..|++..+........ .........
T Consensus         2 ~~~~v~~~m--~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (156)
T d2yzqa1           2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE   78 (156)
T ss_dssp             GGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             CCCCHHHHh--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccchhhh
Confidence            455677778  557999999999999999999999999999996 4899999999998754322211100 000000000


Q ss_pred             ccH-----HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHh
Q 013832          247 HTI-----SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  321 (435)
Q Consensus       247 ~~i-----~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~d  321 (435)
                      ...     ...+.......  ....+.+|+++++++.+++++.+|++.|.+++++++||+|+   +|   +++||+|++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~lvGivt~~D  150 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLP--NKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EG---DLIGLIRDFD  150 (156)
T ss_dssp             ------------------C--CCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TT---EEEEEEEHHH
T ss_pred             hhhhhhhhhhHHHhhhccc--CCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC---CC---EEEEEEEHHH
Confidence            000     00011100000  00113368889999999999999999999999999999973   46   8999999999


Q ss_pred             HHHHH
Q 013832          322 ILKCV  326 (435)
Q Consensus       322 Il~~l  326 (435)
                      |+++|
T Consensus       151 il~~l  155 (156)
T d2yzqa1         151 LLKVL  155 (156)
T ss_dssp             HGGGG
T ss_pred             HHHHh
Confidence            98765

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.68  E-value=1.4e-16  Score=138.14  Aligned_cols=124  Identities=19%  Similarity=0.238  Sum_probs=101.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCc
Q 013832          271 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  350 (435)
Q Consensus       271 ~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~ig  350 (435)
                      ..+++++.+++++.+|++.|.+++++++||+++   ++   +++|++|.+||++++......      .+..++.+.+. 
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~~-   77 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEALL-   77 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHHH-
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhhee-
Confidence            468999999999999999999999999999963   45   799999999999887754221      12234433321 


Q ss_pred             ccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          351 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       351 t~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                           ....+..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+..
T Consensus        78 -----~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          78 -----KRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             -----TSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             -----eeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence                 112334588899999999999999999999999999999999999999999987643

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.68  E-value=9.1e-17  Score=135.42  Aligned_cols=116  Identities=15%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      +|+++++++.+++++.+|++.|.+++++++||++.+. .+   +++|++|..|+++++......        ...+..  
T Consensus         6 im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~--------~~~~~~--   71 (131)
T d2riha1           6 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDL--------DGPAMP--   71 (131)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCT--------TSBSGG--
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeecccccccccccc--------cccccc--
Confidence            4889999999999999999999999999999996432 34   799999999999887754321        111111  


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                         .        .++.+++.+++++.+|+++|.+++++++||||++|+++|+||+.||++.
T Consensus        72 ---~--------~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          72 ---I--------ANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ---G--------CBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ---c--------cccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence               1        2367789999999999999999999999999999999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=2.6e-17  Score=137.42  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=79.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      |.++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+|++....             ..++.    
T Consensus         7 M~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~G~it~~dl~~~~~-------------~~~~~----   63 (122)
T d2yzqa2           7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVNK---EG---KLVGIISVKRILVNPD-------------EEQLA----   63 (122)
T ss_dssp             SEESCCCEESSCC------------CCEEEEECT---TC---CEEEEEESSCC---------------------------
T ss_pred             cCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec---cc---cchhhhhcchhhhhhc-------------ccchh----
Confidence            6788999999999999999999999999999963   46   8999999999975321             12222    


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  409 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~  409 (435)
                              +.+.++++++++++++.+|+++|.+++++++||||++|+++|+||++||++.
T Consensus        64 --------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          64 --------MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             --------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             --------hccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence                    3344688999999999999999999999999999999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=9.4e-17  Score=137.56  Aligned_cols=137  Identities=12%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCC---hhhhh
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT---EEELE  245 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~---~e~l~  245 (435)
                      -+.+.++|.  .++++++++.|+.+|++.|.++++.++||+|++ ++++|++|..||+.++...........   .....
T Consensus         3 ~~~v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~   79 (145)
T d1o50a3           3 VKDVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   79 (145)
T ss_dssp             HHHHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             ceEhHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhh
Confidence            345566674  467899999999999999999999999999964 899999999999987764432211000   00000


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      .......+.              +| .+++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||.+||+++
T Consensus        80 ~~~~~~~~~--------------~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd---~~g---~i~Gvit~~dil~~  138 (145)
T d1o50a3          80 RLIAKNASE--------------IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD---EKG---EIVGDLNSLEILLA  138 (145)
T ss_dssp             CCSSCBHHH--------------HC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHH
T ss_pred             hccccCHHH--------------Hc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe---CCC---eEEEEEEHHHHHHH
Confidence            000000111              13 4567899999999999999999999999996   346   79999999999999


Q ss_pred             HHhh
Q 013832          326 VCRY  329 (435)
Q Consensus       326 l~~~  329 (435)
                      +.+.
T Consensus       139 l~~~  142 (145)
T d1o50a3         139 LWKG  142 (145)
T ss_dssp             HHHS
T ss_pred             HHhc
Confidence            9875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.5e-16  Score=136.44  Aligned_cols=124  Identities=16%  Similarity=0.187  Sum_probs=99.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccC
Q 013832          270 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  349 (435)
Q Consensus       270 ~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~i  349 (435)
                      +.++++++.+++|+.+|++.|.+++++++||+++   +|   +++|++|..||++.+......      .+..++.+.. 
T Consensus        18 ~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~~-   84 (145)
T d2v8qe1          18 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKAL-   84 (145)
T ss_dssp             BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHHG-
T ss_pred             CCCCceEEcCcCcHHHHHHHHHHcCCCccccccc---CC---ceEEEEEcchhhhhhhccccc------chhhhhhhcc-
Confidence            3467899999999999999999999999999963   45   799999999998766543211      1122222211 


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~  411 (435)
                           .....+..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++++-
T Consensus        85 -----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          85 -----QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             -----GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----chhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                 012334568889999999999999999999999999999999999999999998764

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.66  E-value=5.8e-16  Score=134.23  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=108.2

Q ss_pred             cCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCC-CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhc
Q 013832          169 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS-KARFVGVLSASDFILILRELGNHGSNLTEEELETH  247 (435)
Q Consensus       169 ~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~-~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~  247 (435)
                      ..++.|+|.  ..++++++++|+.+|+++|.+++++++||+|.. .+.++|++|..|++..+............+..  .
T Consensus        10 ~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~--~   85 (160)
T d2d4za3          10 NIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM--L   85 (160)
T ss_dssp             SCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC--C
T ss_pred             ceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc--c
Confidence            458899995  478899999999999999999999999999953 46899999999999887654322111000000  0


Q ss_pred             cHHHHHHH-HHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          248 TISAWKEG-KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       248 ~i~~~~e~-~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      +....... ...........+..|.++++++.+++++.+|+++|.+++++++||++    +|   +++||||.+||++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d----~g---~lvGiIt~~Di~k~I  158 (160)
T d2d4za3          86 TLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MG---KLVGVVALAEIQAAI  158 (160)
T ss_dssp             BHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             ccchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE----CC---EEEEEEEHHHHHHHh
Confidence            11111110 01111112223446788999999999999999999999999999985    36   899999999999987


Q ss_pred             H
Q 013832          327 C  327 (435)
Q Consensus       327 ~  327 (435)
                      .
T Consensus       159 ~  159 (160)
T d2d4za3         159 E  159 (160)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.66  E-value=2.8e-16  Score=131.94  Aligned_cols=126  Identities=13%  Similarity=0.235  Sum_probs=103.9

Q ss_pred             hccCceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhh
Q 013832          167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  246 (435)
Q Consensus       167 l~~~~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~  246 (435)
                      |++.++.|+|.  .++++++++.|+.+|+++|.++++..+||.|.  ++++|++|..|++..+......  .        
T Consensus         1 l~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~~--~--------   66 (127)
T d2ef7a1           1 MEEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKSL--E--------   66 (127)
T ss_dssp             CCCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCCT--T--------
T ss_pred             CCccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhccc--c--------
Confidence            45678888884  58999999999999999999999999999984  7899999999998766522111  0        


Q ss_pred             ccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          247 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       247 ~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                      ..+                 +.+|.++++++.+++++.+|++.|.+++++++||+++   .|   +++|++|..||++++
T Consensus        67 ~~v-----------------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~lvGiit~~Dll~~i  123 (127)
T d2ef7a1          67 TKA-----------------EEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITRAI  123 (127)
T ss_dssp             CBG-----------------GGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHH
T ss_pred             chh-----------------hhhhhhhccccccccchhHHHHHHHHcCceEEEEEeC---CC---eEEEEEEHHHHHHHH
Confidence            011                 0136678899999999999999999999999999963   45   899999999999998


Q ss_pred             Hhh
Q 013832          327 CRY  329 (435)
Q Consensus       327 ~~~  329 (435)
                      ...
T Consensus       124 ~~~  126 (127)
T d2ef7a1         124 DDM  126 (127)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            754

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.66  E-value=5.3e-16  Score=137.53  Aligned_cols=132  Identities=14%  Similarity=0.197  Sum_probs=101.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.++.|+.+|+..|.+++++++||+++  +.+   +++|++|..||++++.........  +   ....+.....
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~--~~~---~~vGiis~~Di~~~l~~~~~~~~~--~---~~~~~~~~~~   99 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF--P---EAIAEIDKFR   99 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC--G---GGGGGGGGSB
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeC--CCC---eeEEEEeechHHHHHHhccccccc--h---hhhhhhhccc
Confidence            57899999999999999999999999999974  345   899999999999988765332111  0   0000000000


Q ss_pred             c-----ccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCC-----cEEEEEeHHHHHHHHhhc
Q 013832          352 W-----VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND-----SLLDIYCRSDITALAKDK  413 (435)
Q Consensus       352 ~-----~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g-----~lvGiis~~DI~~~~~~~  413 (435)
                      .     .......|.++++++.++++|.+|+.+|.+++++++||||++|     +++|+||++||++.+..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~  171 (179)
T d2ooxe1         100 LLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMN  171 (179)
T ss_dssp             HHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTT
T ss_pred             hhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHh
Confidence            0     0012456778999999999999999999999999999999654     699999999999987654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=3e-16  Score=130.65  Aligned_cols=113  Identities=12%  Similarity=0.189  Sum_probs=96.9

Q ss_pred             cCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCcccccccccccc
Q 013832          269 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  348 (435)
Q Consensus       269 ~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~  348 (435)
                      .|.++++++.+++|+.+|+++|.+++.+++||++   +++   +++|++|..|+++..             ...++.++ 
T Consensus         6 ~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd---~~~---~~~Gii~~~dl~~~~-------------~~~~v~~~-   65 (121)
T d1vr9a3           6 WVTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDLD-------------LDSSVFNK-   65 (121)
T ss_dssp             GCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTSC-------------TTSBSGGG-
T ss_pred             hhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEe---CCc---eeEEEeehhhhhhhh-------------cccccccc-
Confidence            4788999999999999999999999999999996   345   899999999996320             12344443 


Q ss_pred             CcccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 013832          349 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  412 (435)
Q Consensus       349 igt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~  412 (435)
                                 +.++++++++++++.+|+++|.++++..+||||++|+++|+||+.||++.+.+
T Consensus        66 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          66 -----------VSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             -----------CBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             -----------ccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence                       23577899999999999999999999999999999999999999999987764

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.65  E-value=2.9e-16  Score=131.90  Aligned_cols=123  Identities=23%  Similarity=0.331  Sum_probs=98.1

Q ss_pred             ceecccCC-CCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          171 TAYELLPE-SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       171 ~~~dl~p~-s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      |+.|+|.. ...+++++++.|+.+|++.|.++++.++||.|.  ++++|++|..|++..+......        .....+
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~~--------~~~~~v   72 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDKP--------VKDTQV   72 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSSC--------GGGSBG
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhccc--------ccceeE
Confidence            45555543 357899999999999999999999999999983  7999999999997654322111        111111


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                                       ..+|.++++++.+++++.+|+++|.+++++++||++    +|   +++|+||.+||++.+.
T Consensus        73 -----------------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd----~~---~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          73 -----------------KEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DG---KVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             -----------------GGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHH
T ss_pred             -----------------eeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE----CC---EEEEEEEHHHHHHHHh
Confidence                             113778999999999999999999999999999996    25   8999999999998764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5e-16  Score=135.04  Aligned_cols=131  Identities=20%  Similarity=0.369  Sum_probs=100.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCCccccccccccccCcc
Q 013832          272 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  351 (435)
Q Consensus       272 ~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~~~~~~~~v~~l~igt  351 (435)
                      .+++++.+++|+.+|++.|.+++++++||++.  +.+   +++|++|.+|+++.+...............    ......
T Consensus        23 ~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~--~~~---~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~   93 (159)
T d2v8qe2          23 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALVQIYELE----EHKIET   93 (159)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTTTCCCGG----GCBHHH
T ss_pred             CceEEEcCCCcHHHHHHHHHHcCCCceeEEEC--CCC---cEEEEEEHHHHHHHHHhccccccchhhhhh----hhhccc
Confidence            47899999999999999999999999999974  345   899999999999988765432211000000    000000


Q ss_pred             cccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEeHHHHHHHHh
Q 013832          352 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAK  411 (435)
Q Consensus       352 ~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD-~~g~lvGiis~~DI~~~~~  411 (435)
                      ......+.+.+++++++++++|.+|+++|.+++++++||+| ++|+++|+||.+||++.+.
T Consensus        94 ~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          94 WREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             ccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            11112355667999999999999999999999999999998 4689999999999998764

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.64  E-value=1.1e-15  Score=130.03  Aligned_cols=130  Identities=15%  Similarity=0.238  Sum_probs=102.6

Q ss_pred             eecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH
Q 013832          172 AYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  251 (435)
Q Consensus       172 ~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~  251 (435)
                      +.++|  +.++++++++.|+.+|.++|.+++++++||+|.+ ++++|++|..|++..+.......   .........++.
T Consensus         4 V~~iM--t~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~---~~~~~~~~~v~~   77 (141)
T d3ddja1           4 VKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKL---DPDYFYGKVVKD   77 (141)
T ss_dssp             HHHHS--BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHT---CTHHHHTCBHHH
T ss_pred             eHHhC--cCCCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-Cccccccccccchhhhhcccccc---ccccccCCCHHH
Confidence            44555  4478999999999999999999999999999964 79999999999988765432210   001112222211


Q ss_pred             HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhh
Q 013832          252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  330 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~  330 (435)
                                       +|.++++++.+++++.+|+++|.+++++++||+|.   +|   +++|+||.+||++++....
T Consensus        78 -----------------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~---~~---~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          78 -----------------VMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DN---TIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             -----------------HSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHH
T ss_pred             -----------------HhCcccccccccchhhHHHHHHHHcCCCEEEEEcc---CC---EEEEEEEHHHHHHHHHHHH
Confidence                             27789999999999999999999999999999963   45   7999999999999987653

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1e-15  Score=131.14  Aligned_cols=132  Identities=19%  Similarity=0.255  Sum_probs=99.9

Q ss_pred             ceeccc-CCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          171 TAYELL-PESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       171 ~~~dl~-p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      ++.|+. +...+++++.++.|+.+|+++|.++++.++||+|+ +++++|+||..|++..+.........        ..+
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~~~~--------~~v   80 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLD--------VSV   80 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCCCCS--------SBH
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhcccccchh--------hhh
Confidence            455543 23457899999999999999999999999999996 47999999999987655321111000        111


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                         .+....        ...|..+++++.+++++.+|+++|.+++++++||+|   +.|   +++|+||++||++++..
T Consensus        81 ---~~~~~~--------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          81 ---TKALQH--------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD---EHD---VVKGIVSLSDILQALVL  142 (145)
T ss_dssp             ---HHHGGG--------CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHHHHHHS
T ss_pred             ---hhccch--------hhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc---cCC---EEEEEEEHHHHHHHHHh
Confidence               111111        012567888999999999999999999999999996   345   89999999999999863

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.62  E-value=2.6e-15  Score=124.68  Aligned_cols=118  Identities=19%  Similarity=0.286  Sum_probs=96.7

Q ss_pred             eecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH
Q 013832          172 AYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  251 (435)
Q Consensus       172 ~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~  251 (435)
                      +.|+|.  .+++++++++|+.+|++.|.+++++.+||.|.  ++++|++|..|+++.+.....         +....+. 
T Consensus         2 V~diM~--~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~---------~~~~~v~-   67 (120)
T d1pbja3           2 VEDVMV--TDVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD---------LAEVKVW-   67 (120)
T ss_dssp             HHHHCB--CSCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC---------TTTSBHH-
T ss_pred             hHHhCC--CCCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc---------ccceeEe-
Confidence            345564  47889999999999999999999999999974  799999999999987764321         1111221 


Q ss_pred             HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHH
Q 013832          252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  326 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l  326 (435)
                        +              +|.+++.++.+++++.+|+++|.+++++++||++    +|   +++|++|.+||+++.
T Consensus        68 --~--------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~----~~---~l~Givt~~Dil~A~  119 (120)
T d1pbja3          68 --E--------------VMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE----DD---EIIGVISATDILRAK  119 (120)
T ss_dssp             --H--------------HCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             --e--------------ecccccccccchhHHHHHHHHHHHcCCeEEEEEE----CC---EEEEEEEHHHHHhcC
Confidence              1              2678899999999999999999999999999985    35   899999999999864

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.62  E-value=6.2e-16  Score=132.38  Aligned_cols=124  Identities=17%  Similarity=0.257  Sum_probs=100.3

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.|+|  +.+++++++++|+.+|++.|.++++..+||+|++ ++++|++|..|++..+......        .....+ 
T Consensus         4 ~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~--------~~~~~v-   71 (142)
T d1pvma4           4 RVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKK--------PDEVPI-   71 (142)
T ss_dssp             BGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCC--------GGGSBG-
T ss_pred             EHHHhC--CCCCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhccc--------cccccc-
Confidence            567788  4578899999999999999999999999999964 8999999999997644322111        111111 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                                      +.+|.++++++.+++++.+|+++|.+++++++||+|.   .|   +++|++|..||++++.+
T Consensus        72 ----------------~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          72 ----------------RLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PG---RVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             ----------------GGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TC---CEEEEEEHHHHTTTSCH
T ss_pred             ----------------ccccccccccccchhhHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHHHHhh
Confidence                            1137789999999999999999999999999999963   45   79999999999987654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.3e-15  Score=128.57  Aligned_cols=123  Identities=20%  Similarity=0.292  Sum_probs=100.3

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      .+.|+|  +.+++++++++|+.+|++.|.+++++++||+|++ ++++|++|..|++..+.....   ..      ..++ 
T Consensus         6 pV~~im--~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~---~~------~~~v-   72 (132)
T d2yzia1           6 PIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL---PY------DIPV-   72 (132)
T ss_dssp             BGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC---CT------TSBG-
T ss_pred             cHHHHc--CCCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccC---cc------ceeE-
Confidence            466777  4589999999999999999999999999999974 799999999999865432111   10      1111 


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                                      +.+|.++++++.+++++.+|++.|.+++++++||.+    +|   +++|++|.+||++.+.+.
T Consensus        73 ----------------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~----~~---~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          73 ----------------ERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE----EG---KIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             ----------------GGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHCC
T ss_pred             ----------------eecccccccccCcchHHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHHHH
Confidence                            113778899999999999999999999999999984    35   899999999999987754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.61  E-value=2.8e-15  Score=129.68  Aligned_cols=125  Identities=17%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             CCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHH
Q 013832          178 ESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKA  257 (435)
Q Consensus       178 ~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~  257 (435)
                      ...++++++++.|+.+|+++|.++++.++||+|+ +++++|++|..|++..+......        ....++   .+.+.
T Consensus        10 ~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~~--------~~~~~v---~~~~~   77 (153)
T d2ooxe2          10 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS--------NLDLSV---GEALL   77 (153)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCGG--------GGGSBH---HHHHH
T ss_pred             CCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccccc--------ccccch---hhhee
Confidence            3568999999999999999999999999999996 48999999999998766532211        011122   22221


Q ss_pred             hhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          258 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       258 ~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                      ..        ..+..+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||++||++++..
T Consensus        78 ~~--------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~~---~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          78 KR--------PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD---ENL---KLEGILSLADILNYIIY  134 (153)
T ss_dssp             TS--------CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC---TTC---BEEEEEEHHHHHHHHHS
T ss_pred             ee--------ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc---CCC---EEEEEEEHHHHHHHHHc
Confidence            11        02457888999999999999999999999999996   346   89999999999998864

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.61  E-value=1.7e-15  Score=126.95  Aligned_cols=111  Identities=18%  Similarity=0.307  Sum_probs=90.8

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeCC-CCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHhh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDFS-KARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  259 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~-~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~~  259 (435)
                      .++++.+++|+.+|+++|.++++.++||+|+. +++++|++|..|+....    ......                    
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~----~~~~~~--------------------   61 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS----DYNAPI--------------------   61 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS----CSSSBT--------------------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh----ccCCce--------------------
Confidence            46789999999999999999999999999963 57899999999985421    100000                    


Q ss_pred             cccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          260 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       260 ~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                            ...++..+++++.+++++.+|+++|.+++++++||++   +.|   +++||||.+||++.+.
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd---~~g---~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD---NSG---RLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC---TTS---BEEEEEEHHHHHHHHH
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc---CCC---eEEEEEEHHHHHHHhh
Confidence                  0113567889999999999999999999999999996   346   8999999999999754

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8e-15  Score=128.84  Aligned_cols=137  Identities=11%  Similarity=0.099  Sum_probs=98.9

Q ss_pred             eEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhhhcccCCC----cccccc-ccccccC
Q 013832          275 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS----LPILKL-PICAIPV  349 (435)
Q Consensus       275 v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~~~~~~~~----~~~~~~-~v~~l~i  349 (435)
                      +.+.++.++.+|.++|.+++++++||+++ ++++   +++|++|.+||++++..........    ...+.. .......
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            55678889999999999999999999963 2345   8999999999999887542221100    000000 0000001


Q ss_pred             cccccccCCCCCCCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccc
Q 013832          350 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA  416 (435)
Q Consensus       350 gt~~~~~g~~~~~~v~tv~~d~~L~~a~~~m~~~~i~~lPVVD~~g~lvGiis~~DI~~~~~~~~~~  416 (435)
                      ......+++.|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+.+-...
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~~  161 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ  161 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhcC
Confidence            1111124556667899999999999999999999999999987 68999999999999988764443

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.56  E-value=8.7e-15  Score=122.75  Aligned_cols=118  Identities=25%  Similarity=0.370  Sum_probs=96.6

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHC-----CCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQ-----GISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~-----~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      |+..+|  +..++++.++.|+.+|++.|.++     ++..+||+|.+ ++++|+++..|++.      .. ..       
T Consensus         2 taG~iM--~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~------~~-~~-------   64 (127)
T d2ouxa2           2 TAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIV------ND-DD-------   64 (127)
T ss_dssp             BHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTT------SC-TT-------
T ss_pred             ChhHhC--CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccc------cc-cc-------
Confidence            456677  45889999999999999999887     47899999974 89999999988752      11 00       


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                       ..+   .+              +|.++++++.+++++.+|+++|.+++++++||+|.   +|   +++|+||..||+++
T Consensus        65 -~~v---~~--------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~---~g---~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          65 -TLI---AD--------------ILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY---DD---HLLGIVTVDDIIDV  120 (127)
T ss_dssp             -SBH---HH--------------HSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             -EEh---hh--------------hccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC---CC---EEEEEEEHHHHHHH
Confidence             112   12              27889999999999999999999999999999963   46   89999999999998


Q ss_pred             HHhh
Q 013832          326 VCRY  329 (435)
Q Consensus       326 l~~~  329 (435)
                      +.+.
T Consensus       121 i~ee  124 (127)
T d2ouxa2         121 IDDE  124 (127)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=2.1e-15  Score=125.70  Aligned_cols=117  Identities=15%  Similarity=0.272  Sum_probs=81.7

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.|+|.  .++++++++.|+.+|+++|.++++..+||+|+ +|+++|+||..|++....                    
T Consensus         2 ~v~diM~--~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~--------------------   58 (122)
T d2yzqa2           2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD--------------------   58 (122)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             CcccccC--CCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc--------------------
Confidence            3456663  47889999999999999999999999999996 489999999999864210                    


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                        ....          +.+|.++++++.+++++.+|+++|.+++++++||+|   +.|   +++|+||.+||++.+..
T Consensus        59 --~~~~----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---~~~---~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          59 --EEQL----------AMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD---SKG---KPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -----------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTT
T ss_pred             --ccch----------hhccccceeecchhhHHHHHHHHHHHcCcEEEEEEe---CCC---EEEEEEEHHHHHHHHHh
Confidence              0000          113678889999999999999999999999999996   345   89999999999976543

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-14  Score=125.40  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=103.1

Q ss_pred             ceecccCC--CCCe--EEeCCCccHHHHHHHHHHCCCceeeeee-CCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          171 TAYELLPE--SGKV--VALDIDLPVKQAFHILYEQGISMAPLWD-FSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       171 ~~~dl~p~--s~~v--i~ld~~~~v~eA~~~l~~~~i~s~PV~D-~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      .+.|+|..  +.++  +.+..+.|+.+|.++|.+++++++||++ .++++++|++|..|++..+................
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~   83 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   83 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence            45566643  2222  4467889999999999999999999995 34578999999999998876443322111100000


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                      ..........  .........+.+|.++++++.+++++.+|+++|.+++++++||.+    +|   +++||||++||+++
T Consensus        84 ~~~~~~~~~~--~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d----~g---~lvGiIt~~Dil~~  154 (169)
T d2j9la1          84 YFTEHSPPLP--PYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH----NG---RLLGIITKKDVLKH  154 (169)
T ss_dssp             ECSSSCCCCC--TTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHH
T ss_pred             hhcccchhhh--hccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE----CC---EEEEEEEHHHHHHH
Confidence            0000000000  000000001235778899999999999999999999999999985    35   89999999999999


Q ss_pred             HHhhhcc
Q 013832          326 VCRYFRH  332 (435)
Q Consensus       326 l~~~~~~  332 (435)
                      +.+..++
T Consensus       155 l~~~~~~  161 (169)
T d2j9la1         155 IAQMANQ  161 (169)
T ss_dssp             HHHHCC-
T ss_pred             HHHHhcC
Confidence            9886554

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.52  E-value=2.5e-14  Score=120.07  Aligned_cols=122  Identities=16%  Similarity=0.168  Sum_probs=97.7

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeC-CCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDF-SKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  249 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~-~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i  249 (435)
                      ++.|+|.  .+++++++++|+.+|+++|.++++.++||++. +.++++|++|..|++..+.......  .          
T Consensus         2 ~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~--~----------   67 (131)
T d2riha1           2 RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD--G----------   67 (131)
T ss_dssp             BGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT--S----------
T ss_pred             CHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc--c----------
Confidence            5778884  47889999999999999999999999999953 2478999999999987665322110  0          


Q ss_pred             HHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHh
Q 013832          250 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  328 (435)
Q Consensus       250 ~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~  328 (435)
                           .           ...+..++.++.+++++.+|+++|.+++++++||+|   +.|   +++|+||..||++.+..
T Consensus        68 -----~-----------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd---~~g---~l~Giit~~Dll~~~~~  124 (131)
T d2riha1          68 -----P-----------AMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN---KNG---ELVGVLSIRDLCFERAI  124 (131)
T ss_dssp             -----B-----------SGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHSCHHH
T ss_pred             -----c-----------cccccccceeEeeecchHHHHHHHHHCCeEEEEEEc---CCC---eEEEEEEHHHHHHHHHH
Confidence                 0           001345677899999999999999999999999996   346   79999999999987654

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=8.5e-15  Score=125.55  Aligned_cols=119  Identities=22%  Similarity=0.371  Sum_probs=97.5

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCC-----CceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhh
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQG-----ISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE  245 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~-----i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~  245 (435)
                      |+..+|.  ..++++++++|+.+|++.|.+++     +..+||+|+ .++++|+++..|+...     ..  .       
T Consensus         2 taG~iM~--~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~-----~~--~-------   64 (144)
T d2yvxa2           2 EAGGLMT--PEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----DP--R-------   64 (144)
T ss_dssp             SSGGGCB--SCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTS-----CT--T-------
T ss_pred             CcccccC--CCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhc-----cc--c-------
Confidence            4667774  48999999999999999998874     789999996 4899999999997431     00  0       


Q ss_pred             hccHHHHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          246 THTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       246 ~~~i~~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                       ..+                 ..+|.++++++.|++++.+|++.|.+++++++||+|.   +|   +++|+||.+||++.
T Consensus        65 -~~v-----------------~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~---~g---~lvGiIt~~Dil~~  120 (144)
T d2yvxa2          65 -TRV-----------------AEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---RLVGIVTVDDVLDV  120 (144)
T ss_dssp             -CBS-----------------TTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS---SC---BEEEEEEHHHHHHH
T ss_pred             -cch-----------------HHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE---CC---EEEEEEEHHHHHHH
Confidence             000                 1137889999999999999999999999999999963   46   89999999999998


Q ss_pred             HHhhh
Q 013832          326 VCRYF  330 (435)
Q Consensus       326 l~~~~  330 (435)
                      +....
T Consensus       121 l~~e~  125 (144)
T d2yvxa2         121 LEAEA  125 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.50  E-value=5.5e-15  Score=124.80  Aligned_cols=130  Identities=11%  Similarity=0.103  Sum_probs=97.4

Q ss_pred             ceecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHH
Q 013832          171 TAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS  250 (435)
Q Consensus       171 ~~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~  250 (435)
                      ++.|+|.+  +++++++++|+.+|++.|.++++.++||+|.   +++|++|..|++..+....... .. ...     ..
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~-~~-~~~-----~~   69 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDS-CS-QGD-----LY   69 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC----CC-HHH-----HH
T ss_pred             EeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccc-hh-hhh-----cc
Confidence            46677744  5778999999999999999999999999974   6999999999886553221110 00 000     00


Q ss_pred             HHHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHH
Q 013832          251 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  327 (435)
Q Consensus       251 ~~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~  327 (435)
                      .....         ..+.+|+++++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||.+||++++.
T Consensus        70 ~~~~~---------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd---~~g---~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          70 HISTT---------PIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD---IND---KPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHTS---------BGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHGGGGG
T ss_pred             ccccC---------CHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe---CCC---EEEEEEEHHHHHHHHH
Confidence            00000         01225788999999999999999999999999999996   346   7999999999987654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=4.8e-14  Score=116.98  Aligned_cols=117  Identities=14%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             eecccCCCCCeEEeCCCccHHHHHHHHHHCCCceeeeeeCCCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHH
Q 013832          172 AYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  251 (435)
Q Consensus       172 ~~dl~p~s~~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~  251 (435)
                      +.++|.  ..+.++++++|+.+|++.|.+++..++||+|+ +++++|++|..|++..      ..         ..++  
T Consensus         3 v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~------~~---------~~~v--   62 (121)
T d1vr9a3           3 VKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDL------DL---------DSSV--   62 (121)
T ss_dssp             GGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTS------CT---------TSBS--
T ss_pred             chhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhh------hc---------cccc--
Confidence            445554  46779999999999999999999999999986 4899999999998631      00         0011  


Q ss_pred             HHHHHHhhcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHHHHhh
Q 013832          252 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  329 (435)
Q Consensus       252 ~~e~~~~~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~l~~~  329 (435)
                       .              ..|..+++++++++++.+|+++|.++++..+||++   ++|   +++|+||..||++++.+.
T Consensus        63 -~--------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---e~g---~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          63 -F--------------NKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD---EEM---RLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             -G--------------GGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHS
T ss_pred             -c--------------ccccCccEEECCCCCHHHHHHHHHhcCceeeeeEC---CCC---eEEEEEEHHHHHHHHHHh
Confidence             0              12667888999999999999999999999999996   356   899999999999998753

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.49  E-value=8.6e-16  Score=127.74  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=57.5

Q ss_pred             CeEEeCCCccHHHHHHHHHHCCCceeeeeeC--CCCeEEEeeehHHHHHHHHHhccCCCCCChhhhhhccHHHHHHHHHh
Q 013832          181 KVVALDIDLPVKQAFHILYEQGISMAPLWDF--SKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY  258 (435)
Q Consensus       181 ~vi~ld~~~~v~eA~~~l~~~~i~s~PV~D~--~~~~~vGilT~~D~i~il~~~~~~~~~l~~e~l~~~~i~~~~e~~~~  258 (435)
                      .+++++++.|+.+|+++|.++++.++||+|+  ..++++|++|.+|+.......           +..    ...+    
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-----------~~~----~~~~----   65 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-----------HDR----FLEE----   65 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-----------------------------------------
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-----------cCc----eeEE----
Confidence            4568999999999999999999999999985  347999999999974221110           000    0011    


Q ss_pred             hcccccCCCccCCCCceEeCCCCCHHHHHHHHHhcCCcEEEEEecCCCCCCCCeEEEeeeHHhHHHH
Q 013832          259 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  325 (435)
Q Consensus       259 ~~~~~~~~g~~~~~~~v~v~~~~sL~da~~~m~~~~v~~lpVvd~~~~~g~~~~lvGiiT~~dIl~~  325 (435)
                              .+.+..+++++.+++++.+|+++|.+++++++||+|.   +|   +++||||..||++.
T Consensus        66 --------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~---~~---~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          66 --------IMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE---ND---ELVAIIARTDLKKN  118 (120)
T ss_dssp             --------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET---TT---EEEEEECHHHHHHH
T ss_pred             --------EEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC---CC---EEEEEEEHHHhhhc
Confidence                    1124567899999999999999999999999999973   46   89999999999875

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=4.8e-07  Score=72.70  Aligned_cols=64  Identities=27%  Similarity=0.462  Sum_probs=49.1

Q ss_pred             EEE-EecCCCcEEEEEeecCCCCCC-CCCccccCCCCeEEEEEEcCCceEEEEEEE---CCeee--cCCCCC
Q 013832           28 MRF-VWPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV---DGEWR--HDEHQP   92 (435)
Q Consensus        28 ~~f-~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~~~ykF~V---Dg~w~--~d~~~~   92 (435)
                      ++| +|...|++|+|+|+||+|... .+|.+. +..|.|++.++....-..|||.|   ||+|.  .||-.-
T Consensus        22 v~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~-~~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~   92 (110)
T d1m7xa1          22 TRFSVWAPNARRVSVVGQFNYWDGRRHPMRLR-KESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAF   92 (110)
T ss_dssp             EEEEEECSSCSCEEEEEGGGTSCTTTCBCCCC-TTTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCS
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCceEEeEEe-cCCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhc
Confidence            677 588889999999999999865 588654 35789999998666556777777   77765  466553

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.19  E-value=5.7e-07  Score=70.49  Aligned_cols=62  Identities=23%  Similarity=0.408  Sum_probs=50.1

Q ss_pred             EEEE-ecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEEcCCceEEEEEEECCeeecCCCCCeeeC
Q 013832           28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISS   96 (435)
Q Consensus        28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykF~VDg~w~~d~~~~~~~d   96 (435)
                      ++|. |...|++|.|++++..    .+|.+.  .+|.|++++++.+|.+ |||.|||.|+.||.....++
T Consensus        23 ~~FrvwAP~A~~V~l~~~~~~----~~m~~~--~~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~   85 (97)
T d2bhua1          23 TRFRLWTSTARTVAVRVNGTE----HVMTSL--GGGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPD   85 (97)
T ss_dssp             EEEEEECSSCSSEEEEETTEE----EECEEE--ETTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTT
T ss_pred             EEEEEECCCCCEeEEEeeCCc----cCCEEc--cCEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCC
Confidence            5554 6666999999997653    588885  4799999999999976 99999999999998765444

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.96  E-value=1.8e-05  Score=62.67  Aligned_cols=58  Identities=26%  Similarity=0.329  Sum_probs=46.0

Q ss_pred             ceeeEEEEecC----CCcEEEEEeecC---CCCCC--CCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVWPY----GGRSVFLSGSFN---RWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++|+|.-.+    .|++|+|+|+-.   +|++.  ++|.....  ..+.|++++.||+| .++|||++
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           4 NQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            45889998753    489999999955   89754  68876532  34789999999999 69999998

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.91  E-value=1.1e-05  Score=64.33  Aligned_cols=59  Identities=20%  Similarity=0.488  Sum_probs=46.5

Q ss_pred             CceeeEEEEecC---CCcEEEEEeecC---CCCCC--CCCcccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           23 TVLIPMRFVWPY---GGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        23 ~~~~~~~f~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +..++|+|.-+.   .|++|+|+||..   +|++.  ++|+..+  ...+.|+.++.||+| .++|||++
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            345788888865   389999999965   89865  5787542  235789999999999 79999998

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=3.1e-05  Score=61.30  Aligned_cols=58  Identities=21%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             ceeeEEEEecC----CCcEEEEEeec---CCCCCC--CCCccccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 013832           24 VLIPMRFVWPY----GGRSVFLSGSF---NRWSEL--LPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        24 ~~~~~~f~w~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ..++|+|.-.+    .|+.|+|+||.   -+|+..  ++|++...  ....|.+++.||.| .++|||++
T Consensus         4 ~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           4 DQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             CEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            46899999843    48999999995   589855  68876532  34689999999999 89999998

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.78  E-value=4.8e-05  Score=60.58  Aligned_cols=56  Identities=23%  Similarity=0.460  Sum_probs=42.3

Q ss_pred             eeEEEEec--C---CCcEEEEEeecC---CCCCC--CCCccccC-----CCCeEEEEEEcCCc-eEEEEEEE
Q 013832           26 IPMRFVWP--Y---GGRSVFLSGSFN---RWSEL--LPMSPVEG-----CPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        26 ~~~~f~w~--~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~-----~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +.|+|+..  +   .|+.|+|+|+..   +|++.  ++|+..++     ..+.|++++.||+| .++|||++
T Consensus         6 ~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           6 TSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             eEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            45566653  2   489999999975   89875  57765432     24689999999999 79999987

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.62  E-value=5.9e-05  Score=58.85  Aligned_cols=56  Identities=13%  Similarity=0.183  Sum_probs=42.1

Q ss_pred             eeEEEEecC----CCcEEEEEeecC---CCCCCC--CCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           26 IPMRFVWPY----GGRSVFLSGSFN---RWSELL--PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        26 ~~~~f~w~~----~~~~V~l~Gsf~---~W~~~~--~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      ++++|+-.+    .|+.|+|+|+..   +|++.-  .|.......+.|++.+.||+| .++|||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            566666653    489999999977   998652  222222345789999999999 79999998

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.08  E-value=9.8e-05  Score=56.49  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             EE-EecCCCcEEEEEeecCCCCCCCCCccccCCCCeEEEEEE-cCCceEEEEEEECCe-eecCCCCCe
Q 013832           29 RF-VWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-WRHDEHQPF   93 (435)
Q Consensus        29 ~f-~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~-w~~d~~~~~   93 (435)
                      +| +|...|++|.|++.+.+|   .+|.+.  .+|+|+++++ +.+| +.|+|.|||. ++.||-...
T Consensus        12 ~FrvwAP~A~~V~l~~~~~~~---~~m~~~--~~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~   73 (90)
T d1eh9a1          12 IFTLWAPYQKSVKLKVLEKGL---YEMERD--EKGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRY   73 (90)
T ss_dssp             ECCEECTTCSCCBCCCSSSCC---CCCCCC--TTSEECCEESSCCSC-CEECEECTTSCEECCTTCSC
T ss_pred             EEEEECCCCCEEEEEeecCCc---ccceeC--CCCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhc
Confidence            45 466669999999975433   578874  5799999995 7788 5699999875 667776544

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.07  E-value=0.017  Score=48.32  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=43.1

Q ss_pred             eEEE-EecCCCcEEEEEeecCCCCCC----CCCccccCCCCeEEEEEE--------cCCceEEEEEEECCeee
Q 013832           27 PMRF-VWPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS--------IPPGYHQYKFCVDGEWR   86 (435)
Q Consensus        27 ~~~f-~w~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~--------L~~g~~~ykF~VDg~w~   86 (435)
                      -++| +|...|++|.|+--.+.|...    ++|.+  ...|+|.+.++        +.+|.+ |.|.|||.|.
T Consensus        17 ~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~--~~~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~~   86 (162)
T d1bf2a1          17 NITFRVYSSQATRIVLYLYSAGYGVQESATYTLSP--AGSGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPNW   86 (162)
T ss_dssp             EEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEE--CSTTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTTB
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccc--ccccEEEEEecccccccccCCCCcE-EEEEEccccC
Confidence            4577 688889999999977677542    46766  45799999996        677754 7788999763

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=93.02  E-value=0.049  Score=42.63  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=34.6

Q ss_pred             EecCCCcEEEEEeecCCCCCC--CCCccccCCCCeEEEEEE-cCCceEEEEEEECCee
Q 013832           31 VWPYGGRSVFLSGSFNRWSEL--LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW   85 (435)
Q Consensus        31 ~w~~~~~~V~l~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~-L~~g~~~ykF~VDg~w   85 (435)
                      +|...|++|.|+--..+|...  .+|... ...|+|++.++ +.+|.+ |+|.|++.+
T Consensus        23 lwAP~A~~V~L~l~~~~~~~~~~~~~~~~-~~~GvW~~~i~~~~~G~~-Y~y~v~~~~   78 (115)
T d2fhfa1          23 VWAPTAQQVELVIYSADKKVIASHPMTRD-SASGAWSWQGGSDLKGAF-YRYAMTVYH   78 (115)
T ss_dssp             EECTTCSEEEEEEECTTCCEEEEEECEEC-TTTCEEEEEECGGGTTCE-EEEEEEEEE
T ss_pred             EECCCCCEEEEEEECCCCCccceeeeeEc-CCCCEEEEEECCCCCCCE-EEEEEEccc
Confidence            466669999998544443322  244333 35699999986 778865 777777643

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=91.85  E-value=0.7  Score=37.27  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=43.5

Q ss_pred             CCceeeEEEEecCC--------CcEEEEEeecCCCC----CCCCCccccCCCCeEEEEEEcCCc-eEEEEEEE
Q 013832           22 DTVLIPMRFVWPYG--------GRSVFLSGSFNRWS----ELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV   81 (435)
Q Consensus        22 ~~~~~~~~f~w~~~--------~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykF~V   81 (435)
                      +...+.|||.|++.        .+.|||-++---..    ....|++. ....+|..++.||.. .-.|+|+-
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl-~gTDVW~~s~~vpad~rgsY~fip   90 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRI-AGTDVWQWTTQLNANWRGSYCFIP   90 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEEC-TTSSEEEEEEEEETTCEEEEEEEE
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcC-CCCCeEEEEEEECcccEEEEEEEe
Confidence            44578999999863        35799988754332    11357777 467999999999998 99999984