Citrus Sinensis ID: 013834

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----

MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESCDPRTTEITSAVSAVHIE

ccEEccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccEEEEEccccccccHHHHHHccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEccEEEEEccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEcccccccccEEEEEEccccHHHHHHHHHHccEEEEEcccccccccccccccccHHHcccccccccc

ccEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHccccccHcHHHHHccccEEEEEEcccccccHHHHHHccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHccEEEEcccHHHHHHcccccccccHHHHHHHHcccccccEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccccccEEEEEEccccHHHHHHHHHHcccEEEEEccccccEEEccccccccEEcHHHEEEEcc

myklslknLTLQAVSlsesrnpfVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLditilgcndfySYRNQiearglpltpealaalppfasitfnadesnggnckpevaktglgssaAMTTAVVAALLHYLGIVnlsssidqqhdgdldMVHMIAQSAHCIaqgkigsgfdvssavygsqryvrfspevlssaqvavketplQEVITGILKgkwdheramfslpplmtlllgepgtggsstpsmvgavkkwqksdpqksQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMgeaagvpiepesqTQLLNATMDMEGVLlagvpgaggfDAVFAVTlgdsgsnvtKAWSSVNVLALLVredphgvslescdprtteITSAVSAVHIE

myklslknLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSaqvavketplqeVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKwqksdpqksqETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEqateptqeaVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDphgvslescdprtteitsavsavhie

MYKLSLKNLTLQAVSLSESRNPFveyavqyavaaayaIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGlpltpealaalppfaSITFNADESNGGNCKPEVAKTGLGssaamttavvaallHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFslpplmtlllgepgtggsstpsMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEgvllagvpgaggFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESCDPRTTEITSAVSAVHIE

**********L*AV*L**SRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNA***************GLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLG*************************************************KLAEEHWNAYKQVIESCSKL***************AVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE****TQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDP*************************

MYK*******************FVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQ*******************ASITFNA*********PEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESCDPRTTEITSAVSAVH**

MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITILGCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPG*********************************SNSALETQLNMLSKLAEEHWNAYKQVIESCSKLK*************EAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESCDPRTTEITSAVSAVHIE

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		435	2.2.26 [Sep-21-2011]
P24521		451	Phosphomevalonate kinase	yes	no	0.788	0.760	0.309	3e-37
Q9UT88		426	Probable phosphomevalonat	yes	no	0.765	0.781	0.298	2e-33

>sp\|P24521\|ERG8_YEAST Phosphomevalonate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG8 PE=1 SV=2	Back alignment and function desciption

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 191/388 (49%), Gaps = 45/388 (11%)

Query: 1   MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITIL 60
           +Y +S K+  +  VS+  S+NPF+E  +    A  ++ F  N  D  ++ L     I I 
Sbjct: 68  LYHISPKSGFI-PVSIGGSKNPFIEKVI----ANVFSYFKPNMDDYCNRNLFV---IDIF 119

Query: 61  GCNDFYSYRNQI-EARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAA 119
             + ++S  + + E RG                   N   S   +   EV KTGLGSSA 
Sbjct: 120 SDDAYHSQEDSVTEHRG-------------------NRRLSFHSHRIEEVPKTGLGSSAG 160

Query: 120 MTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYG 179
           + T +  AL  +  + +L +++D+  +    ++H +AQ AHC AQGKIGSGFDV++A YG
Sbjct: 161 LVTVLTTALASFF-VSDLENNVDKYRE----VIHNLAQVAHCQAQGKIGSGFDVAAAAYG 215

Query: 180 SQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTGG 239
           S RY RF P ++S+       T   ++   + +  W+       LP  +TL +G+    G
Sbjct: 216 SIRYRRFPPALISNLPDIGSATYGSKLAHLVDEEDWNITIKSNHLPSGLTLWMGDI-KNG 274

Query: 240 SSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESC 299
           S T  +V  VK W  S   +S + + +L  +NS     L+ L +L E H +   Q+ ES 
Sbjct: 275 SETVKLVQKVKNWYDSHMPESLKIYTELDHANSRFMDGLSKLDRLHETHDDYSDQIFESL 334

Query: 300 SKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNA 359
              +++   ++  E T+          RDA+  IR   R + + +G  IEP  QT LL+ 
Sbjct: 335 E--RNDCTCQKYPEITE---------VRDAVATIRRSFRKITKESGADIEPPVQTSLLDD 383

Query: 360 TMDMEGVLLAGVPGAGGFDAVFAVTLGD 387
              ++GVL   +PGAGG+DA+  +T  D
Sbjct: 384 CQTLKGVLTCLIPGAGGYDAIAVITKQD 411

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2

>sp\|Q9UT88\|ERG8_SCHPO Probable phosphomevalonate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg8 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		435
225427072		508	PREDICTED: phosphomevalonate kinase [Vit	1.0	0.856	0.797	0.0
224071407		492	predicted protein [Populus trichocarpa]	1.0	0.884	0.816	0.0
255558358		503	ATP binding protein, putative [Ricinus c	0.995	0.860	0.799	0.0
118488139		503	unknown [Populus trichocarpa]	0.997	0.862	0.816	0.0
224138256		495	predicted protein [Populus trichocarpa]	0.997	0.876	0.810	0.0
449436860		507	PREDICTED: probable phosphomevalonate ki	0.997	0.856	0.778	0.0
357463877		508	Phosphomevalonate kinase [Medicago trunc	1.0	0.856	0.780	0.0
343466159		500	phosphomevalonate kinase [Siraitia grosv	0.983	0.856	0.775	0.0
356516039		508	PREDICTED: phosphomevalonate kinase-like	1.0	0.856	0.769	0.0
16417948		503	phosphomevalonate kinase [Hevea brasilie	0.997	0.862	0.808	0.0

>gi\|225427072\|ref\|XP_002275808.1\| PREDICTED: phosphomevalonate kinase [Vitis vinifera] gi\|297742018\|emb\|CBI33805.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/439 (79%), Positives = 382/439 (87%), Gaps = 4/439 (0%)

Query: 1   MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITIL 60
           MYK+SLKNL LQ VS SESRNPFVE AVQY +AAA A  DKN  D LH  LLQGLDITIL
Sbjct: 70  MYKMSLKNLMLQCVSSSESRNPFVEQAVQYTIAAARATLDKNNNDFLHTKLLQGLDITIL 129

Query: 61  GCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAM 120
           GCNDFYSYRN IEARGLPLTP+ LAALPPF  ITFNA+ESNG NCKPEVAKTGLGSSAAM
Sbjct: 130 GCNDFYSYRNYIEARGLPLTPDVLAALPPFTPITFNAEESNGENCKPEVAKTGLGSSAAM 189

Query: 121 TTAVVAALLHYLGIVNLSSSIDQQHDG----DLDMVHMIAQSAHCIAQGKIGSGFDVSSA 176
           TT+VVAALLHY G+VNLSS    QH      DLD+VH+IAQSAHCIAQGK+GSGFDVSSA
Sbjct: 190 TTSVVAALLHYFGVVNLSSLNKDQHQEKDCVDLDLVHVIAQSAHCIAQGKVGSGFDVSSA 249

Query: 177 VYGSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPG 236
           VYGSQRYVRFSPEVLSSAQVAVK  P+QEVI  ILKG WDHER  FSLPPLMTLLLGEPG
Sbjct: 250 VYGSQRYVRFSPEVLSSAQVAVKGLPIQEVIHDILKGNWDHERTKFSLPPLMTLLLGEPG 309

Query: 237 TGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVI 296
            GGSSTPSMVGAVKKWQKSDP+KS ETW+KLS +NSALETQ  +LSKLAEE+W+AYK VI
Sbjct: 310 AGGSSTPSMVGAVKKWQKSDPEKSLETWRKLSAANSALETQFKILSKLAEENWDAYKCVI 369

Query: 297 ESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQL 356
            SCS  +SEKWME+AT P QEAVV +LL ARDAML IR +MR MGEAAG+PIEP SQT+L
Sbjct: 370 NSCSIHRSEKWMERATGPDQEAVVNALLAARDAMLRIRSNMRQMGEAAGIPIEPNSQTRL 429

Query: 357 LNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLE 416
           L+ATMDMEGVLLAGVPGAGGFDA+FAVTLGDS SN+TKAW+S+NVLA+LVREDPHGVSLE
Sbjct: 430 LDATMDMEGVLLAGVPGAGGFDAIFAVTLGDSSSNITKAWTSLNVLAMLVREDPHGVSLE 489

Query: 417 SCDPRTTEITSAVSAVHIE 435
           + DPR  +ITSA+S+VHIE
Sbjct: 490 TGDPRAQQITSAISSVHIE 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224071407\|ref\|XP_002303445.1\| predicted protein [Populus trichocarpa] gi\|222840877\|gb\|EEE78424.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255558358\|ref\|XP_002520206.1\| ATP binding protein, putative [Ricinus communis] gi\|223540698\|gb\|EEF42261.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|118488139\|gb\|ABK95889.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224138256\|ref\|XP_002326557.1\| predicted protein [Populus trichocarpa] gi\|222833879\|gb\|EEE72356.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449436860\|ref\|XP_004136210.1\| PREDICTED: probable phosphomevalonate kinase-like [Cucumis sativus] gi\|449508038\|ref\|XP_004163199.1\| PREDICTED: probable phosphomevalonate kinase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357463877\|ref\|XP_003602220.1\| Phosphomevalonate kinase [Medicago truncatula] gi\|355491268\|gb\|AES72471.1\| Phosphomevalonate kinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|343466159\|gb\|AEM42973.1\| phosphomevalonate kinase [Siraitia grosvenorii]	Back alignment and taxonomy information

>gi\|356516039\|ref\|XP_003526704.1\| PREDICTED: phosphomevalonate kinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|16417948\|gb\|AAL18926.1\|AF429385_1 phosphomevalonate kinase [Hevea brasiliensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		435
TAIR\|locus:2034466		505	AT1G31910 [Arabidopsis thalian	0.997	0.859	0.588	5.3e-127
DICTYBASE\|DDB_G0292666		520	DDB_G0292666 "Phosphomevalonat	0.574	0.480	0.281	6.4e-23
SGD\|S000004833		451	ERG8 "Phosphomevalonate kinase	0.186	0.179	0.418	2.4e-17
ASPGD\|ASPL0000050326		480	AN2311 [Emericella nidulans (t	0.416	0.377	0.319	1.2e-13
CGD\|CAL0003589		432	ERG8 [Candida albicans (taxid:	0.422	0.425	0.265	1.5e-10
UNIPROTKB\|Q5AMP0		432	ERG8 "Putative uncharacterized	0.422	0.425	0.265	1.5e-10
POMBASE\|SPAC343.01c		426	erg8 "phosphomevalonate kinase	0.514	0.525	0.234	2e-09

TAIR\|locus:2034466 AT1G31910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
 Identities = 257/437 (58%), Positives = 302/437 (69%)

Query:     1 MYKLSLKNLTLQAVSLSESRNPFXXXXXXXXXXXXXXIFDKNKKDALHKLLLQGLDITIL 60
             MYKLSL +LTLQ+VS S+SRNPF                +K+K ++LHKLLLQGLDITIL
Sbjct:    70 MYKLSLNHLTLQSVSASDSRNPFVEHAIQYAIAAAHLATEKDK-ESLHKLLLQGLDITIL 128

Query:    61 GCNDFYSYRNQIEARGXXXXXXXXXXXXXXXSITFNADESNGGNCKPEVAKTGLGXXXXX 120
             G NDFYSYRNQIE+ G               SITFNA ESNG N KPEVAKTGLG     
Sbjct:   129 GSNDFYSYRNQIESAGLPLTPESLGTLAPFASITFNAAESNGANSKPEVAKTGLGSSAAM 188

Query:   121 XXXXXXXXXHYLGIVNLSSSIDQQHDG--DLDMVHMIAQSAHCIAQGKIGSGFDVSSAVY 178
                      HYLG+V+LS    +   G  DLD++HMIAQ++HC+AQGK+GSGFDVS AVY
Sbjct:   189 TTAVVAALLHYLGVVDLSDPCKEGKFGCSDLDVIHMIAQTSHCLAQGKVGSGFDVSCAVY 248

Query:   179 GSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFXXXXXXXXXXXXXXXX 238
             GSQRYVRFSPEVLS AQVAV   PL EVI  ILKGKWD++R  F                
Sbjct:   249 GSQRYVRFSPEVLSFAQVAVTGLPLNEVIGTILKGKWDNKRTEFSLPPLMNLFLGEPGSG 308

Query:   239 XXXXXXMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIES 298
                   MVGAVKKWQ SDP+K++E W+ LS++N  LET+LN LSKLA++HW+ Y +VI+S
Sbjct:   309 GSSTPSMVGAVKKWQMSDPEKARENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKS 368

Query:   299 CSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLN 358
             CS L SEKW+  ATEP  EA++K LL AR+AML IR  MR MGEAA VPIEPESQTQLL+
Sbjct:   369 CSVLTSEKWVLHATEPINEAIIKELLEAREAMLRIRILMRQMGEAASVPIEPESQTQLLD 428

Query:   359 ATMDMEXXXXXXXXXXXXFDAVFAVTLGDSGSNVTKAWSSVNVLALLVREDPHGVSLESC 418
             +TM  E            FDA+FA+TLGDSG+ +T+AWSS NVLALLVREDPHGV LES 
Sbjct:   429 STMSAEGVLLAGVPGAGGFDAIFAITLGDSGTKLTQAWSSHNVLALLVREDPHGVCLESG 488

Query:   419 DPRTTEITSAVSAVHIE 435
             DPRTT ITS VS++H+E
Sbjct:   489 DPRTTCITSGVSSIHLE 505

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0292666 DDB_G0292666 "Phosphomevalonate kinase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

SGD\|S000004833 ERG8 "Phosphomevalonate kinase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000050326 AN2311 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0003589 ERG8 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5AMP0 ERG8 "Putative uncharacterized protein ERG8" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

POMBASE\|SPAC343.01c erg8 "phosphomevalonate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.4.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		435
TIGR01219		454	TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase	1e-161
COG3890		337	COG3890, ERG8, Phosphomevalonate kinase [Lipid met	9e-34
TIGR01220		358	TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kina	2e-07
COG1577		307	COG1577, ERG12, Mevalonate kinase [Lipid metabolis	3e-06
pfam00288		67	pfam00288, GHMP_kinases_N, GHMP kinases N terminal	6e-06
TIGR00549		274	TIGR00549, mevalon_kin, mevalonate kinase	2e-04
cd07681		258	cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homolo	0.001

>gnl\|CDD\|233318 TIGR01219, Pmev_kin_ERG8, phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

 Score =  460 bits (1186), Expect = e-161
 Identities = 265/426 (62%), Positives = 319/426 (74%), Gaps = 38/426 (8%)

Query: 1   MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDITIL 60
           +YK+SL +LTLQ+VS S+SRNPFV   +QYA+AA +  FDK    +LHKLLLQGLDITIL
Sbjct: 63  LYKISLNHLTLQSVSASDSRNPFVNPFIQYAIAAVHLYFDKE---SLHKLLLQGLDITIL 119

Query: 61  GCNDFYSYRNQIEARGLPLTPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAM 120
           G N +YS             PE+L  L PFASITFNA E      KPEVAKTGLGSSAAM
Sbjct: 120 GDNAYYSQ------------PESLGTLAPFASITFNAAE------KPEVAKTGLGSSAAM 161

Query: 121 TTAVVAALLHYLGIVNLSS--SIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVY 178
           TTA+VAALLHYLG+V+LS      +    DLD++H +AQ+AHC+AQGK+GSGFDVS+AVY
Sbjct: 162 TTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVY 221

Query: 179 GSQRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPGTG 238
           GSQRY RFSPE++S  QVA+   PL EV+  I+KGKWD++R  FSLPPLM L +G+PG G
Sbjct: 222 GSQRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPG-G 280

Query: 239 GSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIES 298
           GSSTPSMVG VKKWQ SDP++S+E W+ LS++N  LET+LN LSKLA++HW+ Y +VI+ 
Sbjct: 281 GSSTPSMVGKVKKWQMSDPEESRENWQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKV 340

Query: 299 CSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLN 358
              L SEK +  ATE   E        AR+AML IR  MR + E A V IEPESQTQLL+
Sbjct: 341 ---LTSEKCVLHATEELLE--------AREAMLRIRRLMRQITEEASVDIEPESQTQLLD 389

Query: 359 ATMDMEGVLLAGVPGAGGFDAVFAVTLG--DSGSNVTKAWSSVNVLALLVREDPHGVSLE 416
           +TM +EGVLLAGVPGAGGFDA+FA+TLG  DSG+ +T+AWSS NVLAL VRE PHGV LE
Sbjct: 390 STMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSHNVLALDVREAPHGVCLE 449

Query: 417 SCDPRT 422
           S DPRT
Sbjct: 450 S-DPRT 454

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase [Central intermediary metabolism, Other]. Length = 454

>gnl\|CDD\|226407 COG3890, ERG8, Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>gnl\|CDD\|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>gnl\|CDD\|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain	Back alignment and domain information

>gnl\|CDD\|233017 TIGR00549, mevalon_kin, mevalonate kinase	Back alignment and domain information

>gnl\|CDD\|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		435
KOG4519		459	consensus Phosphomevalonate kinase [Lipid transpor	100.0
TIGR01219		454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	100.0
COG3890		337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	100.0
TIGR01220		358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	100.0
COG1577		307	ERG12 Mevalonate kinase [Lipid metabolism]	100.0
PLN02677		387	mevalonate kinase	100.0
KOG1511		397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.97
PRK13412		974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.96
TIGR00549		273	mevalon_kin mevalonate kinase. Paracoccus exhibits	99.96
PRK03926		302	mevalonate kinase; Provisional	99.95
PTZ00298		328	mevalonate kinase; Provisional	99.93
PRK05101		382	galactokinase; Provisional	99.93
PRK05322		387	galactokinase; Provisional	99.93
COG0153		390	GalK Galactokinase [Carbohydrate transport and met	99.92
TIGR00131		386	gal_kin galactokinase. The galactokinases found by	99.92
COG2605		333	Predicted kinase related to galactokinase and meva	99.91
PRK00555		363	galactokinase; Provisional	99.91
PLN02521		497	galactokinase	99.89
PLN02865		423	galactokinase	99.89
PTZ00290		468	galactokinase; Provisional	99.87
PRK03817		351	galactokinase; Provisional	99.86
PRK01123		282	shikimate kinase; Provisional	99.66
PLN02451		370	homoserine kinase	99.66
TIGR01920		261	Shik_kin_archae shikimate kinase. This model repre	99.65
PRK00128		286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.51
TIGR00191		302	thrB homoserine kinase. P.aeruginosa homoserine ki	99.51
PRK02534		312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.5
PRK03188		300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.46
PRK01212		301	homoserine kinase; Provisional	99.43
TIGR00154		293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.4
PRK14614		280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.39
PRK14608		290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.2
PF00288		67	GHMP_kinases_N: GHMP kinases N terminal domain; In	99.14
PRK14611		275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.13
PRK14616		287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.12
PRK14612		276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.1
PRK14609		269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.09
KOG0631		489	consensus Galactokinase [Carbohydrate transport an	99.07
PRK14615		296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.07
TIGR00144		324	beta_RFAP_syn beta-RFAP synthase. This protein fam	99.0
COG0083		299	ThrB Homoserine kinase [Amino acid transport and m	98.93
PF08544		85	GHMP_kinases_C: GHMP kinases C terminal ; InterPro	98.87
PRK14613		297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.79
PTZ00299		336	homoserine kinase; Provisional	98.77
PRK14610		283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.56
KOG4644		948	consensus L-fucose kinase [Carbohydrate transport	98.48
PRK00343		271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	98.41
PLN02407		343	diphosphomevalonate decarboxylase	98.06
TIGR01240		305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	98.0
PRK00650		288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	97.85
COG1685		278	Archaeal shikimate kinase [Amino acid transport an	97.74
COG3407		329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	96.76
PRK05905		258	hypothetical protein; Provisional	96.49
COG1907		312	Predicted archaeal sugar kinases [General function	96.49
COG1947		289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	96.41
COG1829		283	Predicted archaeal kinase (sugar kinase superfamil	96.06
PRK04181		257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	95.64
COG4542		293	PduX Protein involved in propanediol utilization,	94.2
KOG2833		395	consensus Mevalonate pyrophosphate decarboxylase [	92.32

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=6.1e-84  Score=624.33  Aligned_cols=387  Identities=64%  Similarity=0.970  Sum_probs=339.7

Q ss_pred             CceeccCCCceeeeccCCCCCCcHHHHHHHHHHHHHHHHcccchhHHhhhhcCceeEE-EeecCCCccchhHHHHcCCCC
Q 013834            1 MYKLSLKNLTLQAVSLSESRNPFVEYAVQYAVAAAYAIFDKNKKDALHKLLLQGLDIT-ILGCNDFYSYRNQIEARGLPL   79 (435)
Q Consensus         1 ~y~~~~~~~~~~~~~~~~~~N~fve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-i~~dn~fySq~~~~~~~~~~~   79 (435)
                      .|+|+++...+++++.+.++|||||.+|+|+++|    |.+.   .+++.+.+++.|| |++||.||+|++.        
T Consensus        66 lY~is~~~~~i~v~~~~~s~NPFve~ai~yvi~y----f~~~---~~~~lc~q~L~Vt~l~sddaY~~qp~s--------  130 (459)
T KOG4519|consen   66 LYKISLNHLTIQVVSASDSRNPFVEHAIQYVIAY----FHLA---TLHKLCLQGLDVTILGSDDAYSYQPES--------  130 (459)
T ss_pred             eeecccccceeEEEecCCCCCcHHHHHHHHHHHH----hhhc---cchhHHhcCceEEEeecccccccCccc--------
Confidence            4999999999999999999999999999999995    4334   3788899999999 6677777777653        


Q ss_pred             ChhhhccCCCCcccccccCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHhccccCCCcc--ccCCCCCHHHHHHHHH
Q 013834           80 TPEALAALPPFASITFNADESNGGNCKPEVAKTGLGSSAAMTTAVVAALLHYLGIVNLSSSI--DQQHDGDLDMVHMIAQ  157 (435)
Q Consensus        80 ~~~~l~~~~~f~~~~~~l~~~~g~~~~~~v~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~--~~~~~~~~~~i~~LAq  157 (435)
                          +..+.+|.+|+++-..      +|+|+||||||||||+|+++++|+.+++.++.+..+  ......+++.||||||
T Consensus       131 ----~~~~~~~~~~~F~~~~------~~eV~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ  200 (459)
T KOG4519|consen  131 ----LGTLAPFASITFNAAE------KPEVAKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQ  200 (459)
T ss_pred             ----ccccCCCCceeeeccc------cccccccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHH
Confidence                3344578888887543      569999999999999999999999999855543222  2245557899999999


Q ss_pred             HHHHHHcCCCCCccchhheeeCCeeeeecChhhhhhhh-hhhcCCchhhhhhhhccCCCccccccccCCCCceEEEEecC
Q 013834          158 SAHCIAQGKIGSGFDVSSAVYGSQRYVRFSPEVLSSAQ-VAVKETPLQEVITGILKGKWDHERAMFSLPPLMTLLLGEPG  236 (435)
Q Consensus       158 ~Ah~~aQGk~GSG~DvaaAvyGg~~Y~rf~p~~l~~~~-~~~~~~~~~~~l~~l~~~~W~~~~~~~~lp~~~~Lllgdtg  236 (435)
                      .|||.+|||+||||||+||+|||++||||+|++|+.++ ....+.+..+++..+...+|+..+..|.||+++.|+|||..
T Consensus       201 ~aHC~AQGKvGSGFDV~aA~yGS~rYrRF~P~lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP~~~~L~mGd~~  280 (459)
T KOG4519|consen  201 TAHCLAQGKVGSGFDVSAAVYGSQRYRRFSPELISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLPPLMNLFMGDGS  280 (459)
T ss_pred             HHHHHhcCCccCCcceehhhccceeeeeCCHHHHHHHHHHHhccChhHHHHHHhhhhhcccccccccCCceeeeeeecCC
Confidence            99999999999999999999999999999999999886 33345566677777778889999988999999999999998


Q ss_pred             CCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhh
Q 013834          237 TGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQ  316 (435)
Q Consensus       237 ~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~  316 (435)
                      . ||+||+||++|++|++++|+++.++|+.|+..|..+...|.+|+.+++.+...|.++++.|..+.           .+
T Consensus       281 g-GSsTp~mV~kVk~Wq~s~~pe~~k~~~~lddansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~-----------~~  348 (459)
T KOG4519|consen  281 G-GSSTPSMVGKVKKWQMSDPPEARKNWQNLDDANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLT-----------IN  348 (459)
T ss_pred             C-CCCcHHHHHHHHHHhhcCChhHhhhhcchhhHHHHHHhhhhhhhHhhhhchhHHHHHHhhccccc-----------ch
Confidence            7 99999999999999999999999999999999999999999999999998889999999988632           24


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC--hhHHHH
Q 013834          317 EAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS--GSNVTK  394 (435)
Q Consensus       317 ~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~--~~~l~~  394 (435)
                      ..+.+++.+++++|..+|.+||.|+++++|+|||+.||.|+|.|+.++|||++.||||||+||+++|+..+.  ..++.+
T Consensus       349 ~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~  428 (459)
T KOG4519|consen  349 EAIIKELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQ  428 (459)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHh
Confidence            556788899999999999999999999999999999999999999999999999999999999999998854  688999


Q ss_pred             HHHhCCceEEeeeeCCCCcEEEecCcchhhH
Q 013834          395 AWSSVNVLALLVREDPHGVSLESCDPRTTEI  425 (435)
Q Consensus       395 ~w~~~gv~~L~~~~~~~Gv~~e~~~~~~~~~  425 (435)
                      .|+..+|.+|++++++.||++|+ |+++.++
T Consensus       429 ~w~~~~V~~ldV~~a~~Gv~~E~-dp~t~~~  458 (459)
T KOG4519|consen  429 AWSSHNVLALDVREAPHGVCLES-DPRTTCI  458 (459)
T ss_pred             hhcccCeeEEeeeeCCCcceecc-CCccccc
Confidence            99999999999999999999999 7777554

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>PLN02677 mevalonate kinase	Back alignment and domain information

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]	Back alignment and domain information

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional	Back alignment and domain information

>TIGR00549 mevalon_kin mevalonate kinase	Back alignment and domain information

>PRK03926 mevalonate kinase; Provisional	Back alignment and domain information

>PTZ00298 mevalonate kinase; Provisional	Back alignment and domain information

>PRK05101 galactokinase; Provisional	Back alignment and domain information

>PRK05322 galactokinase; Provisional	Back alignment and domain information

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00131 gal_kin galactokinase	Back alignment and domain information

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	Back alignment and domain information

>PRK00555 galactokinase; Provisional	Back alignment and domain information

>PLN02521 galactokinase	Back alignment and domain information

>PLN02865 galactokinase	Back alignment and domain information

>PTZ00290 galactokinase; Provisional	Back alignment and domain information

>PRK03817 galactokinase; Provisional	Back alignment and domain information

>PRK01123 shikimate kinase; Provisional	Back alignment and domain information

>PLN02451 homoserine kinase	Back alignment and domain information

>TIGR01920 Shik_kin_archae shikimate kinase	Back alignment and domain information

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR00191 thrB homoserine kinase	Back alignment and domain information

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK01212 homoserine kinase; Provisional	Back alignment and domain information

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2	Back alignment and domain information

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR00144 beta_RFAP_syn beta-RFAP synthase	Back alignment and domain information

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2	Back alignment and domain information

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PTZ00299 homoserine kinase; Provisional	Back alignment and domain information

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PLN02407 diphosphomevalonate decarboxylase	Back alignment and domain information

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase	Back alignment and domain information

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>PRK05905 hypothetical protein; Provisional	Back alignment and domain information

>COG1907 Predicted archaeal sugar kinases [General function prediction only]	Back alignment and domain information

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		435
3k17_A		365	LIN0012 protein; protein structure initiative II(P	4e-26
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	3e-23
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	2e-07
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	4e-06
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	9e-06
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	2e-05
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	9e-05

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365	Back alignment and structure

 Score =  107 bits (269), Expect = 4e-26
 Identities = 58/306 (18%), Positives = 103/306 (33%), Gaps = 64/306 (20%)

Query: 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSG 170
           K GLGSSAA T AV+ AL+                +  +     +A  +H + QG  GS 
Sbjct: 114 KYGLGSSAAATVAVINALMTKFYP-----------EISMLKKFKLAALSHLVVQGN-GSC 161

Query: 171 FDVSSAVYGS-QRYVRFSPEVLSSAQVAVKETPLQEVITGILKGKWDHERAMFSLPPLMT 229
            D++S +YG    Y  F  E        VK     + +   +K  W   +      P+ T
Sbjct: 162 GDIASCMYGGWIAYTTFDQE-------WVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPT 214

Query: 230 LLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHW 289
             +G  GT   ST  +V  +  +++ D +  Q    + +E    +    +          
Sbjct: 215 FSVGWTGTPV-STGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHT--------- 264

Query: 290 NAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIE 349
              + +                                 ++   R  ++ +G  AGV IE
Sbjct: 265 KDEELLYS-------------------------------SIKENRRILQELGTKAGVNIE 293

Query: 350 PESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDSGSN-VTKAWSSVNVLALLVRE 408
                +L ++  +M G       G+GG D   A +     +  +   W  + +  L    
Sbjct: 294 TSLLKELADSAENMGGA--GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHT 351

Query: 409 DPHGVS 414
               ++
Sbjct: 352 GRVQIT 357

PyMOL of 3k17

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		435
3k17_A		365	LIN0012 protein; protein structure initiative II(P	100.0
3gon_A		335	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	100.0
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	99.95
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.95
4hac_A		321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.95
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	99.93
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	99.92
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	99.91
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	99.89
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.89
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.88
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	99.88
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	99.87
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.85
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	99.78
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	99.68
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.64
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.41
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.41
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	99.36
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.36
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	99.14
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.13
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	99.05
3f0n_A		414	Mevalonate pyrophosphate decarboxylase; cholestero	98.95
2hke_A		380	Diphosphomevalonate decarboxylase, putative; meval	98.84

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}	Back alignment and structure

Probab=100.00  E-value=4.4e-39  Score=327.38  Aligned_cols=242  Identities=24%  Similarity=0.329  Sum_probs=204.7

Q ss_pred             CCCCcChhHHHHHHHHHHHHHHhccccCCCccccCCCCCHHHHHHHHHHHHHHHcCCCCCccchhheeeCCe-eeeecCh
Q 013834          110 AKTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQHDGDLDMVHMIAQSAHCIAQGKIGSGFDVSSAVYGSQ-RYVRFSP  188 (435)
Q Consensus       110 ~KtGLGSSAAlvvalv~ALl~~~~~~~l~~~~~~~~~~~~~~i~~LAq~Ah~~aQGk~GSG~DvaaAvyGg~-~Y~rf~p  188 (435)
                      .|+|||||||++||++.||..+++ +++          ++++|+++|+.+|+.++| +|||+|+++++|||+ .|++|++
T Consensus       113 ~~~GLgSSaa~~va~~~al~~~~~-~~l----------~~~~l~~~a~~~E~~~~g-~~~g~D~~~~~~Gg~~~~~~~~~  180 (365)
T 3k17_A          113 AKYGLGSSAAATVAVINALMTKFY-PEI----------SMLKKFKLAALSHLVVQG-NGSCGDIASCMYGGWIAYTTFDQ  180 (365)
T ss_dssp             CBCSSCHHHHHHHHHHHHHHHHHC-TTS----------CHHHHHHHHHHHHHHHHS-SCCSHHHHHHHHCSEEEEECCCH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHhC-CCC----------CHHHHHHHHHHHHHHhCC-CCCcccHHHHhcCCEEEEecCCH
Confidence            589999999999999999999998 665          889999999999999999 999999999999998 8889999


Q ss_pred             hhhhhhhhhhcCCchhhhhhhhccCCC-ccccccccCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHH
Q 013834          189 EVLSSAQVAVKETPLQEVITGILKGKW-DHERAMFSLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKL  267 (435)
Q Consensus       189 ~~l~~~~~~~~~~~~~~~l~~l~~~~W-~~~~~~~~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L  267 (435)
                      .++.+....   ..    +..++..+| +..++++++|++ +|+|+||+. +++|++++++|.+|+..+|+....+++.+
T Consensus       181 ~~~~~~~~~---~~----l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~-~~sT~~~~~~v~~~~~~~~~~~~~~~~~~  251 (365)
T 3k17_A          181 EWVKHRLAY---KS----LEWFMKEPWPMLQIETLEEPVP-TFSVGWTGT-PVSTGKLVSQIHAFKQEDSKNYQHFLTRN  251 (365)
T ss_dssp             HHHHHHHTT---SC----HHHHHHSCCTTCEEEEECCCSS-EEEEEECSC-CCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHhhhhccc---ch----hhhhhccCCCCcceeeccCCcc-cEEEEECCC-ccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            988765422   12    556667899 558899999988 999999999 99999999999999988886555544444


Q ss_pred             hhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCC
Q 013834          268 SESNSALETQLNMLSKLAEEHWNAYKQVIESCSKLKSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVP  347 (435)
Q Consensus       268 ~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~  347 (435)
                      ++...                     .++++|..        +|           +..++++|+++|+.||.|++++|++
T Consensus       252 ~~~~~---------------------~~~~aL~~--------gd-----------~~~lg~lm~~~~~~l~~l~v~~~~~  291 (365)
T 3k17_A          252 NEIMK---------------------QIIQAFHT--------KD-----------EELLYSSIKENRRILQELGTKAGVN  291 (365)
T ss_dssp             HHHHH---------------------HHHHHHHH--------TC-----------HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHH---------------------HHHHHHHh--------CC-----------HHHHHHHHHHHHHHHHHhhhhcCCc
Confidence            43322                     23344443        33           3489999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhcCCceeeeecCCCccceeEEEecCCC-hhHHHHHHHhCCceEEeeeeCCCCcE
Q 013834          348 IEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFAVTLGDS-GSNVTKAWSSVNVLALLVREDPHGVS  414 (435)
Q Consensus       348 Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iiaL~~~~~-~~~l~~~w~~~gv~~L~~~~~~~Gv~  414 (435)
                      |++|++++|++.+++. |++ +|+||||||||+|+|+.++. .+++.++|++.|+.+++++++..|..
T Consensus       292 is~p~ld~l~~~a~~~-Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~  357 (365)
T 3k17_A          292 IETSLLKELADSAENM-GGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLGIKHLPFHTGRVQIT  357 (365)
T ss_dssp             CSCHHHHHHHHHHHHT-TSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHTTCEECCCCBCCCEEE
T ss_pred             ccCHHHHHHHHHHHhc-CCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence            9999999999999998 555 99999999999999987654 68899999999999999998876653

PyMOL of 3k17

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A	Back alignment and structure

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*	Back alignment and structure

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*	Back alignment and structure

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*	Back alignment and structure

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*	Back alignment and structure

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2	Back alignment and structure

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A	Back alignment and structure

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		435
d1kvka1		225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	5e-09
d1k47a1		194	d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)	1e-04

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 111 KTGLGSSAAMTTAVVAALLHYLGIVNLSSSIDQQH----DGDLDMVHMIAQSAHCIAQGK 166
             GLGSSAA +  V AALL     V              + DL  ++  A     +  G 
Sbjct: 140 GAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGN 199

Query: 167 IGSGFDVSSAVYGS 180
             SG D S + +G 
Sbjct: 200 -PSGVDNSVSTWGG 212

PyMOL of d1kvka1

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		435
d1kvka2		169	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.89
d1k47a2		135	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.82
d1k47a1		194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.74
d1kkha2		137	Mevalonate kinase {Archaeon Methanococcus jannasch	99.68
d1kvka1		225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.61
d1wuua2		176	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1piea2		183	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.41
d1kkha1		180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.35
d1s4ea2		171	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.32
d1s4ea1		176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.23
d1wuua1		215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1piea1		205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	98.93
d1h72c1		163	Homoserine kinase {Archaeon Methanococcus jannasch	98.69
d1fi4a1		188	Mevalonate 5-diphosphate decarboxylase {Baker's ye	93.67
d1ueka2		120	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	92.59
d1h72c2		133	Homoserine kinase {Archaeon Methanococcus jannasch	84.99
d1oj4a1		163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	83.47

>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Mevalonate kinase
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.4e-22  Score=180.13  Aligned_cols=163  Identities=20%  Similarity=0.188  Sum_probs=127.8

Q ss_pred             cCCCCceEEEEecCCCCCCcHHHHHHHHHHhhhCchhHHHHHHHHhhhHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhhh
Q 013834          223 SLPPLMTLLLGEPGTGGSSTPSMVGAVKKWQKSDPQKSQETWKKLSESNSALETQLNMLSKLAEEHWNAYKQVIESCSKL  302 (435)
Q Consensus       223 ~lp~~~~Lllgdtg~~~s~T~~lV~~V~~wr~~~pe~a~~~~~~L~~~n~~~~~~L~~l~~l~~~~~~~y~~~i~al~~l  302 (435)
                      +|| .++|+|+|||. +++|..+|.+|.+++..+|+....+++.++.......+.+                  +.... 
T Consensus         1 ~lP-~l~lll~~Tgv-~r~T~~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l------------------~~~~~-   59 (169)
T d1kvka2           1 RLP-ALQILLTNTKV-PRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVL------------------GEMAA-   59 (169)
T ss_dssp             CCC-CEEEEEEECCC-CCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHH------------------HHHTT-
T ss_pred             CCC-CeEEEEEcCCC-cchHHHHHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHh------------------hhhhh-
Confidence            367 49999999999 9999999999999999999877776666655433322211                  11111 


Q ss_pred             hhhhhhhcCCchhhHHHHHhHHHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHhcCCceeeeecCCCccceeEE
Q 013834          303 KSEKWMEQATEPTQEAVVKSLLGARDAMLGIRYHMRLMGEAAGVPIEPESQTQLLNATMDMEGVLLAGVPGAGGFDAVFA  382 (435)
Q Consensus       303 ~~~~w~~~d~~~~~~~~~~~~~~l~~~i~~~r~lLr~lg~~sgv~Iepp~lt~Lld~a~~~~Gvlgakv~GAGGGD~iia  382 (435)
                              ...      ...+..++++|+++|.+|+.|+      |++|++++|++.|++. | +|||++|||||||+++
T Consensus        60 --------~~~------~~d~~~lg~lm~~~~~lL~~lg------VS~~~ld~lv~~a~~~-g-~gaKltGAGgGGc~ia  117 (169)
T d1kvka2          60 --------APV------PEQYLVLEELMDMNQHHLNALG------VGHASLDQLCQVTAAH-G-LHSKLTGAGGGGCGIT  117 (169)
T ss_dssp             --------CCC------HHHHHHHHHHHHHHHHHHHHHT------CCCHHHHHHHHHHHHT-T-CEEEECSSCSSSEEEE
T ss_pred             --------hcc------cchHHHHHHHHHHhHHHHHhcC------cChHHHHHHHHHHHHc-C-ccccccCCCCCCeEEE
Confidence                    000      0224589999999999999996      6999999999999987 5 5999999999999999


Q ss_pred             EecCCC----hhHHHHHHHhCCceEEeeeeCCCCcEEEecCcchhhHHHh
Q 013834          383 VTLGDS----GSNVTKAWSSVNVLALLVREDPHGVSLESCDPRTTEITSA  428 (435)
Q Consensus       383 L~~~~~----~~~l~~~w~~~gv~~L~~~~~~~Gv~~e~~~~~~~~~~~~  428 (435)
                      |+.++.    .+.+.++|+..|++.+.++.+.+||+++.........+++
T Consensus       118 l~~~~~~~~~~~~i~~~l~~~Gf~~~~~~i~~~Gv~i~~~~~~~~~~~~~  167 (169)
T d1kvka2         118 LLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMHSATSIEDPVRQA  167 (169)
T ss_dssp             EECTTCCHHHHHHHHHHHHHTTCEEEEEEESCCCSEEECTTTSCHHHHHH
T ss_pred             EecccchHHHHHHHHHHHHHcCCeEEEEecCCCcEEEeccccCChHHHhh
Confidence            998765    2567779999999999999999999999877655445444

PyMOL of d1kvka2

>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure