Citrus Sinensis ID: 013853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccccccccccEEEEEccEEcccccccccccccEEEcccccccccccHHHHHccccccccccEEEEEccccccEEEEEEEccccccEEEEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEccccEEEEEEEEEEEcccEEEEEEEEEEEcccccccccccccccEEcccccEEccccccEEEEcccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccc
cccccccccEEEEEccccccccccccccccEEEEEEEEccccccccccHHcccHHHHHHHcccccccccccHHHHccHHHHHHHHHcccccccccccEEccHHHHHHHcHHHHHHHHcccccccccHHEEEEEcccEEEcccEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcccEEEEEEccccccEEEEEEccccccccccEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEEcccccEEEEEEEccccEEEEcccEEEEEcccccEEEEEEEEEccccccccccEEEEEccccccEEEEEEEEEccccccEEEEEEEEcccccccccccEccEEEEccccccccccEEEEEcccEEEEEEEEEccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccc
msalsfsphlhininrnpkltpkrrakpnkiRVSLqttfpqatfsdpFVIQLAESledslpssssslpqplplqklrdsssqtllstpwpsrkdepfrftdtsmikssqiqpitrpsssldvstdaqfpsLVLIDGFiqnsalnlsnlpdgvyvgsLLGVSDGIMKRVSDFIsefqcgdlfwsingmgapdlgviyvpaegndcywaNSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYelvevstggklsrhnvhvqqlgpdteteLSSFHLLVSDQTQDLHSRllldhprgycrQLHKCIVAHSlgqavfdgnvkvnryaqqtdagqLTRSlllepratvnvkpnlqiiaddvkcshgaaisdlEESQLFYFQARGIDLETARKALVFSFGaevierfpypsirNQVVSHVKNlmgttdvsfs
msalsfsphlhininrnpkltpkrraKPNKIRVSLQttfpqatfsDPFVIQLAESLEDSLPSSSSSLPqplplqklrdsssqtllstpwpsrkdepFRFTDTsmikssqiqpitrpssslDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLlepratvnvkpnLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKnlmgttdvsfs
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDslpssssslpqplplqKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS
*************************************TFPQATFSDPFVIQ***************************************************************************QFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQ*********LSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM********
**********************************************PFVIQLAESLEDSL************LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTT*****
MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESL*************PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIK****************STDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS
****SFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMG*******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
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MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGTTDVSFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query435 2.2.26 [Sep-21-2011]
Q9LQK7475 Protein ABCI7, chloroplas yes no 0.935 0.856 0.603 1e-153
Q55792453 UPF0051 protein slr0076 O N/A no 0.781 0.750 0.319 2e-50
P77689423 FeS cluster assembly prot N/A no 0.377 0.387 0.366 2e-27
Q49682392 UPF0051 protein ML0594 OS yes no 0.409 0.454 0.301 1e-16
O53153397 UPF0051 protein Rv1462/MT yes no 0.537 0.589 0.275 6e-16
P59973397 UPF0051 protein Mb1497 OS yes no 0.537 0.589 0.271 2e-15
P67126846 UPF0051 protein Mb1496 OS no no 0.466 0.239 0.259 1e-13
P67125846 UPF0051 protein Rv1461/MT no no 0.466 0.239 0.259 1e-13
Q9ZS97557 UPF0051 protein ABCI8, ch no no 0.441 0.344 0.276 7e-13
Q49689869 UPF0051 protein ML0593 OS no no 0.466 0.233 0.254 4e-12
>sp|Q9LQK7|AB7I_ARATH Protein ABCI7, chloroplastic OS=Arabidopsis thaliana GN=ABCI7 PE=1 SV=1 Back     alignment and function desciption
 Score =  541 bits (1394), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/469 (60%), Positives = 334/469 (71%), Gaps = 62/469 (13%)

Query: 13  NINRNPKLTPKRRAKPNKIRVSLQTTFPQATFSDPFVIQLAESLEDSLPSSSSSLPQPLP 72
           N++  PKL   RR     + V       QA+FSDPFV+QLAESLEDSL +S SS      
Sbjct: 15  NLSSKPKLKSNRRTTSTSVSVR-----AQASFSDPFVLQLAESLEDSLSASPSSSLP--- 66

Query: 73  LQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPIT---RPSSSLDVSTDAQFP 129
           LQ++RDSS++TLLSTPWPSRKDEPFRFTDTS+I+SSQI+PI+   R S  LD  T+ QF 
Sbjct: 67  LQRIRDSSAETLLSTPWPSRKDEPFRFTDTSLIRSSQIEPISTQQRNSEILDNLTETQFT 126

Query: 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGA 189
           + V+IDGF+ N  +  S+LPDGVY G   G+ D +  R+S+FI  F  GDLFWSINGMGA
Sbjct: 127 NAVIIDGFVSNLTIGPSDLPDGVYFGKYSGLPDELTNRISEFIGNFDSGDLFWSINGMGA 186

Query: 190 PDLGVIYVPA-------------------------------------EGNDC-------- 204
           PDL VIYVP                                      EG +         
Sbjct: 187 PDLMVIYVPEGCKVENPIYLRYFSGETGDRESKRLPVSNPRVFVLVEEGGEIGIVEEFVG 246

Query: 205 ------YWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 258
                 YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S YELVEVSTGG
Sbjct: 247 KDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGG 306

Query: 259 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 318
           KL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQLHKCIVAHS G
Sbjct: 307 KLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSG 366

Query: 319 QAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE 378
           QAVFDGNV+VNR+AQQT+AGQLTRSLLL+PRATVN+KPNLQIIADDVKCSHGAAISDLEE
Sbjct: 367 QAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATVNIKPNLQIIADDVKCSHGAAISDLEE 426

Query: 379 SQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM 427
            QLFYFQARGIDLETAR+AL+ SFG+EVIE+FP   IR+Q  +HVK L+
Sbjct: 427 DQLFYFQARGIDLETARRALISSFGSEVIEKFPNREIRDQARNHVKGLL 475

Arabidopsis thaliana (taxid: 3702)
>sp|Q55792|Y076_SYNY3 UPF0051 protein slr0076 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0076 PE=3 SV=1 Back     alignment and function description
>sp|P77689|SUFD_ECOLI FeS cluster assembly protein SufD OS=Escherichia coli (strain K12) GN=sufD PE=1 SV=1 Back     alignment and function description
>sp|Q49682|Y594_MYCLE UPF0051 protein ML0594 OS=Mycobacterium leprae (strain TN) GN=ML0594 PE=3 SV=1 Back     alignment and function description
>sp|O53153|Y1462_MYCTU UPF0051 protein Rv1462/MT1509 OS=Mycobacterium tuberculosis GN=Rv1462 PE=3 SV=1 Back     alignment and function description
>sp|P59973|Y1497_MYCBO UPF0051 protein Mb1497 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1497 PE=3 SV=1 Back     alignment and function description
>sp|P67126|Y1496_MYCBO UPF0051 protein Mb1496 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1496 PE=3 SV=1 Back     alignment and function description
>sp|P67125|Y1461_MYCTU UPF0051 protein Rv1461/MT1508 OS=Mycobacterium tuberculosis GN=Rv1461 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZS97|AB8I_ARATH UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1 Back     alignment and function description
>sp|Q49689|Y593_MYCLE UPF0051 protein ML0593 OS=Mycobacterium leprae (strain TN) GN=ML0593 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
255588981484 Protein sufD, putative [Ricinus communis 0.963 0.865 0.637 1e-166
225427242495 PREDICTED: protein ABCI7, chloroplastic- 0.949 0.834 0.630 1e-159
297742116480 unnamed protein product [Vitis vinifera] 0.949 0.860 0.630 1e-159
147775510 593 hypothetical protein VITISV_028794 [Viti 0.958 0.703 0.627 1e-158
449461525496 PREDICTED: protein ABCI7, chloroplastic- 0.970 0.850 0.604 1e-158
224138876456 predicted protein [Populus trichocarpa] 0.910 0.868 0.660 1e-157
359475767527 PREDICTED: LOW QUALITY PROTEIN: protein 0.942 0.777 0.620 1e-153
297851692476 hypothetical protein ARALYDRAFT_473442 [ 0.937 0.857 0.605 1e-151
18398463475 protein ABCI7 [Arabidopsis thaliana] gi| 0.935 0.856 0.603 1e-151
21554655475 unknown [Arabidopsis thaliana] 0.935 0.856 0.603 1e-151
>gi|255588981|ref|XP_002534787.1| Protein sufD, putative [Ricinus communis] gi|223524572|gb|EEF27596.1| Protein sufD, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/488 (63%), Positives = 355/488 (72%), Gaps = 69/488 (14%)

Query: 1   MSALSFSPHLHININRNPKLTPKRRAKPNKIRVSLQ-TTFP--QATFSDPFVIQLAESLE 57
           MSAL F P ++       +L PK +   +K++ SL  TT P  QA FSDPFV+QLAE+LE
Sbjct: 1   MSALVFVPPVYTFTRITTRLKPKPK---HKVKTSLSLTTTPVIQAGFSDPFVLQLAETLE 57

Query: 58  DSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRP- 116
           DSL  S S       LQKLRDS S++LLSTPWPSR+DEPFRFTDTS+IK SQI PI++P 
Sbjct: 58  DSLSPSPS-------LQKLRDSCSESLLSTPWPSRRDEPFRFTDTSLIKQSQIHPISKPP 110

Query: 117 --SSSLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLG-VSDGIMKRVSDFIS 173
                 D+S DAQ P++V++DGFI NS  N  N PDGV+VGS+L    D I K VS +  
Sbjct: 111 PIDHLTDISKDAQLPNIVIVDGFILNSMSNSLNFPDGVFVGSMLNDPEDKIAKLVSKYFD 170

Query: 174 EFQCGDLFWSINGMGAPDLGVIYVPA---------------------------------- 199
           +FQ GDLFWSING+GAPD+ VIYVPA                                  
Sbjct: 171 DFQWGDLFWSINGLGAPDVAVIYVPAGVRVENPIHLRYVSVEGGEEGSNKLPVSNPRVLV 230

Query: 200 ------------------EGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAV 241
                              G+ CYWANSVLEV+I +G KV+HSY+Q+QSLN+AHIKWTAV
Sbjct: 231 VVEEGGEVGIIEEFVSIGSGDKCYWANSVLEVMIEEGAKVKHSYIQSQSLNSAHIKWTAV 290

Query: 242 RQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHP 301
           +Q+++S YELVEVSTGGKLSRHN+HVQQLGPDT TELS+FHL VS QTQDLHSRL+LDHP
Sbjct: 291 QQKSSSTYELVEVSTGGKLSRHNLHVQQLGPDTSTELSTFHLCVSSQTQDLHSRLVLDHP 350

Query: 302 RGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQII 361
           R Y RQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQII
Sbjct: 351 RAYSRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQII 410

Query: 362 ADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVS 421
           ADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVI+R P+  IR QV  
Sbjct: 411 ADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIDRCPFSFIRKQVER 470

Query: 422 HVKNLMGT 429
            VK L+ +
Sbjct: 471 QVKELLSS 478

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225427242|ref|XP_002278544.1| PREDICTED: protein ABCI7, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297742116|emb|CBI33903.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775510|emb|CAN69419.1| hypothetical protein VITISV_028794 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461525|ref|XP_004148492.1| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus] gi|449521999|ref|XP_004168016.1| PREDICTED: protein ABCI7, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224138876|ref|XP_002326712.1| predicted protein [Populus trichocarpa] gi|222834034|gb|EEE72511.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359475767|ref|XP_003631753.1| PREDICTED: LOW QUALITY PROTEIN: protein ABCI7, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297851692|ref|XP_002893727.1| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata] gi|297339569|gb|EFH69986.1| hypothetical protein ARALYDRAFT_473442 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398463|ref|NP_564404.1| protein ABCI7 [Arabidopsis thaliana] gi|75180162|sp|Q9LQK7.1|AB7I_ARATH RecName: Full=Protein ABCI7, chloroplastic; AltName: Full=ABC transporter I family member 7; Short=ABC transporter ABCI.7; Short=AtABCI7; AltName: Full=Non-intrinsic ABC protein 6; AltName: Full=Plastid SufD-like protein; Flags: Precursor gi|8920626|gb|AAF81348.1|AC007767_28 Contains an uncharacterized protein family (UPF0051) domain PF|01458 [Arabidopsis thaliana] gi|115646721|gb|ABJ17094.1| At1g32500 [Arabidopsis thaliana] gi|332193373|gb|AEE31494.1| protein ABCI7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554655|gb|AAM63647.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
TAIR|locus:2033734475 ABCI7 "AT1G32500" [Arabidopsis 0.544 0.498 0.723 3e-142
UNIPROTKB|Q60A79434 sufD "FeS assembly protein Suf 0.464 0.465 0.370 6.2e-33
UNIPROTKB|P77689423 sufD "SufD component of SufBCD 0.374 0.385 0.382 1.4e-31
UNIPROTKB|Q83BX9426 sufD "SufD" [Coxiella burnetii 0.535 0.546 0.308 4.8e-24
TIGR_CMR|CBU_1358426 CBU_1358 "conserved hypothetic 0.535 0.546 0.308 4.8e-24
TIGR_CMR|SPO_2017426 SPO_2017 "FeS assembly protein 0.491 0.502 0.278 6.6e-17
GENEDB_PFALCIPARUM|PF11_00441462 PF11_0044 "hypothetical protei 0.489 0.145 0.279 3.2e-15
UNIPROTKB|Q8IIW91462 PF11_0044 "Iron-sulfur assembl 0.489 0.145 0.279 3.2e-15
UNIPROTKB|O53153397 MT1509 "UPF0051 protein Rv1462 0.544 0.596 0.277 3.7e-15
UNIPROTKB|P67125846 MT1508 "UPF0051 protein Rv1461 0.466 0.239 0.259 1.2e-11
TAIR|locus:2033734 ABCI7 "AT1G32500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 912 (326.1 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
 Identities = 173/239 (72%), Positives = 205/239 (85%)

Query:   191 DLGVI--YVPAEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASG 248
             ++G++  +V  +    YW N VLEVV+ K  K++HSYLQ +S+ +AHIKWT VRQE  S 
Sbjct:   237 EIGIVEEFVGKDEEGFYWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESE 296

Query:   249 YELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQL 308
             YELVEVSTGGKL RHNVHVQQLGPDT TEL++FH+ V++QT DLHS+++LDHPRG  RQL
Sbjct:   297 YELVEVSTGGKLGRHNVHVQQLGPDTLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQL 356

Query:   309 HKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCS 368
             HKCIVAHS GQAVFDGNV+VNR+AQQT+AGQLTRSLLL+PRATVN+KPNLQIIADDVKCS
Sbjct:   357 HKCIVAHSSGQAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATVNIKPNLQIIADDVKCS 416

Query:   369 HGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLM 427
             HGAAISDLEE QLFYFQARGIDLETAR+AL+ SFG+EVIE+FP   IR+Q  +HVK L+
Sbjct:   417 HGAAISDLEEDQLFYFQARGIDLETARRALISSFGSEVIEKFPNREIRDQARNHVKGLL 475
GO:0005215 "transporter activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;RCA;IDA
GO:0006810 "transport" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0009536 "plastid" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006569 "tryptophan catabolic process" evidence=RCA
GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|Q60A79 sufD "FeS assembly protein SufD" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
UNIPROTKB|P77689 sufD "SufD component of SufBCD Fe-S cluster scaffold complex" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q83BX9 sufD "SufD" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1358 CBU_1358 "conserved hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2017 SPO_2017 "FeS assembly protein SufD" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0044 PF11_0044 "hypothetical protein" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIW9 PF11_0044 "Iron-sulfur assembly protein, sufD, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|O53153 MT1509 "UPF0051 protein Rv1462/MT1509" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|P67125 MT1508 "UPF0051 protein Rv1461/MT1508" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LQK7AB7I_ARATHNo assigned EC number0.60340.93560.8568yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
pfam01458230 pfam01458, UPF0051, Uncharacterized protein family 2e-66
TIGR01981275 TIGR01981, sufD, FeS assembly protein SufD 4e-62
COG0719412 COG0719, SufB, Cysteine desulfurase activator SufB 2e-54
PRK10948424 PRK10948, PRK10948, cysteine desulfurase activator 2e-40
TIGR01980448 TIGR01980, sufB, FeS assembly protein SufB 3e-14
CHL00085485 CHL00085, ycf24, putative ABC transporter 1e-09
PRK11814486 PRK11814, PRK11814, cysteine desulfurase activator 2e-05
>gnl|CDD|216514 pfam01458, UPF0051, Uncharacterized protein family (UPF0051) Back     alignment and domain information 
 Score =  211 bits (540), Expect = 2e-66
 Identities = 78/204 (38%), Positives = 118/204 (57%), Gaps = 1/204 (0%)

Query: 199 AEGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 258
           + G      N V E+++G+G +++++ +QN+   + H   T VR E  +  E   VS GG
Sbjct: 28  SPGAGDGLHNGVTEIIVGEGARLKYTKIQNEGKGSIHFATTRVRLEEDATLESTSVSLGG 87

Query: 259 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLG 318
           KLSR++  V   G   E EL+  +L   DQ  D H+++  + P    R L+K ++     
Sbjct: 88  KLSRNDPDVDLNGEGAEAELNGVYLAKGDQHVDTHTKVRHNGPNTRSRILYKGVLKDR-S 146

Query: 319 QAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE 378
           + VF G +KV + AQ+TD  Q  R+LLL  +A V+ KP L+I ADDVKCSHGA +  L+E
Sbjct: 147 RGVFRGKIKVEKGAQKTDGHQECRNLLLSDKARVDTKPELEIYADDVKCSHGATVGQLDE 206

Query: 379 SQLFYFQARGIDLETARKALVFSF 402
            QLFY  +RG+  E A++ L+  F
Sbjct: 207 EQLFYLMSRGLSEEEAKRLLIRGF 230

Length = 230
>gnl|CDD|233666 TIGR01981, sufD, FeS assembly protein SufD Back     alignment and domain information
>gnl|CDD|223791 COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|236804 PRK10948, PRK10948, cysteine desulfurase activator complex subunit SufD; Provisional Back     alignment and domain information
>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB Back     alignment and domain information
>gnl|CDD|214359 CHL00085, ycf24, putative ABC transporter Back     alignment and domain information
>gnl|CDD|236990 PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 435
TIGR01980448 sufB FeS assembly protein SufB. This protein, SufB 100.0
PRK10948424 cysteine desulfurase activator complex subunit Suf 100.0
CHL00085485 ycf24 putative ABC transporter 100.0
PRK11814486 cysteine desulfurase activator complex subunit Suf 100.0
TIGR01981366 sufD FeS assembly protein SufD, group 1. This prot 100.0
COG0719412 SufB Cysteine desulfurase activator SufB [Posttran 100.0
PF01458229 UPF0051: Uncharacterized protein family (UPF0051); 100.0
PF01458229 UPF0051: Uncharacterized protein family (UPF0051); 98.02
CHL00085485 ycf24 putative ABC transporter 97.57
TIGR01981366 sufD FeS assembly protein SufD, group 1. This prot 97.5
TIGR01980448 sufB FeS assembly protein SufB. This protein, SufB 97.47
PRK10948424 cysteine desulfurase activator complex subunit Suf 97.4
PRK11814486 cysteine desulfurase activator complex subunit Suf 97.38
COG0719412 SufB Cysteine desulfurase activator SufB [Posttran 96.59
>TIGR01980 sufB FeS assembly protein SufB Back     alignment and domain information 
Probab=100.00  E-value=5.2e-79  Score=636.89  Aligned_cols=362  Identities=20%  Similarity=0.246  Sum_probs=318.9

Q ss_pred             ccCCCcHHHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHhHcCCCCC--CCCCCCCCcchhhhhhcCCC--CC--C
Q 013853           41 QATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQ--PI--T  114 (435)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~R~~A~~~~~~~g~P~--~k~E~wkyT~l~~l~~~~~~--p~--~  114 (435)
                      +..++...+..+.+.+.           +|.||.++|++|++.|.+++||+  +|.|+|+|||++.+....+.  +.  .
T Consensus        18 ~~~~~~~~~~~~s~~~~-----------ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~   86 (448)
T TIGR01980        18 EKGLTEEVVEEISEKKG-----------EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDE   86 (448)
T ss_pred             CCCCCHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhh
Confidence            34445555666665533           89999999999999999999999  99999999999977654331  11  1


Q ss_pred             CCCC------CCCCC-----CCCCcceEEEECCEEcccccCCCCCCCCeEEEecccCc---hhHHHHhhccccccccCch
Q 013853          115 RPSS------SLDVS-----TDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDL  180 (435)
Q Consensus       115 ~~~~------~~~~~-----~~~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~~~~d~  180 (435)
                      .+..      ..+++     ..... .++|+||.+...+++... ++||++++|++|.   ++++++|++..... .+|+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ls~~l~-~~GV~~~~l~~a~~~~~~~v~~~l~~~~~~-~~~~  163 (448)
T TIGR01980        87 VPDEIKDTFEKLGIPEAERKALAGV-GAQYDSEVIYHNIKEDLE-EKGVIFCDMDTALKEYPDLVKEYFMSVVPP-SDNK  163 (448)
T ss_pred             CCHHHHHHHHHcCCChHHhhhcCce-EEEEcCEEEEEcchhHHh-cCCEEEecHHHHHHhCHHHHHHHHhccCCC-cccH
Confidence            1111      01122     12233 599999999998886432 8899999999885   57899999884443 3789


Q ss_pred             HHHhhhccCCCceEEEecC-------------------------------------------C-CCcceeeeeEEEEEEc
Q 013853          181 FWSINGMGAPDLGVIYVPA-------------------------------------------E-GNDCYWANSVLEVVIG  216 (435)
Q Consensus       181 f~aLN~a~~~dg~~i~Vp~-------------------------------------------~-~~~~~~~n~v~ei~v~  216 (435)
                      |++||+|++++|+|||||+                                           . ++..+++|+++||+++
T Consensus       164 f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~~~~~~~~~~~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~  243 (448)
T TIGR01980       164 FAALNGAVWSGGSFVYVPKGVRVDMPLQTYFRINSENTGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVK  243 (448)
T ss_pred             HHhHhhcccCceEEEEECCCCEeCCCEEEEEEEcCCccceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEc
Confidence            9999999999999999999                                           0 2345799999999999


Q ss_pred             CCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEE
Q 013853          217 KGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRL  296 (435)
Q Consensus       217 ~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i  296 (435)
                      +||+|+|++||+|+.+++|+.++++.++++|+|+|+.+.+|+.++|+++.+.|.|++|.++++|++++.++|++|+++.|
T Consensus       244 ~~A~v~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v  323 (448)
T TIGR01980       244 EDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKM  323 (448)
T ss_pred             CCCEEEEEEEeecCCCeEEEEEEEEEEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEEEEecCCCEEEEcceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCC
Q 013853          297 LLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDL  376 (435)
Q Consensus       297 ~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~i  376 (435)
                      .|.+|+|+|++++|||+. |+|++||+|+|+|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+|
T Consensus       324 ~h~~p~t~s~~~~k~v~~-d~s~~vf~G~i~v~~~A~~t~a~q~~~~LlLs~~a~~~t~P~LeI~~dDV~~sHgAtvG~i  402 (448)
T TIGR01980       324 IHLAPNTSSTIISKSISK-GGGKSTYRGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKI  402 (448)
T ss_pred             EEeCCCcEEEEEEEEEEC-CCcEEEEEEEEEECCCCCCCccEEEEeEEEECCCcceEecceEEEecCCeEEEeeeeccCC
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHH
Q 013853          377 EESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRN  417 (435)
Q Consensus       377 DeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~  417 (435)
                      |+|||||||||||++++|++|||+||+.+|+++||.|...+
T Consensus       403 deeqLFYL~SRGi~~~eA~~Lii~gF~~evi~~ip~e~~~e  443 (448)
T TIGR01980       403 SEEQLFYLMSRGLSEEDARAMIVRGFVEPITKELPMEYAVE  443 (448)
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhCChHHHHH
Confidence            99999999999999999999999999999999999765543

This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional Back     alignment and domain information
>CHL00085 ycf24 putative ABC transporter Back     alignment and domain information
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional Back     alignment and domain information
>TIGR01981 sufD FeS assembly protein SufD, group 1 Back     alignment and domain information
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron Back     alignment and domain information
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron Back     alignment and domain information
>CHL00085 ycf24 putative ABC transporter Back     alignment and domain information
>TIGR01981 sufD FeS assembly protein SufD, group 1 Back     alignment and domain information
>TIGR01980 sufB FeS assembly protein SufB Back     alignment and domain information
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional Back     alignment and domain information
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional Back     alignment and domain information
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
1vh4_A435 Crystal Structure Of A Stabilizer Of Iron Transport 2e-28
2zu0_A423 Crystal Structure Of Sufc-Sufd Complex Involved In 2e-28
>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter Length = 435 Back     alignment and structure 
Iteration: 1

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 106/169 (62%), Gaps = 5/169 (2%)
Query: 257 GGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYC--RQLHKCIVA 314
           GG + RHN   Q  G ++   ++S  + V ++  D  +R  L+H +G+C  RQLHK IV+
Sbjct: 251 GGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCD--TRTWLEHNKGFCNSRQLHKTIVS 308
Query: 315 HSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAIS 374
              G+AVF+G + V ++A +TD      +LL+   A V+ KP L+I ADDVKCSHGA + 
Sbjct: 309 DK-GRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVG 367
Query: 375 DLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHV 423
            +++ Q+FY ++RGI+ + A++ ++++F AE+ E      ++ QV++ +
Sbjct: 368 RIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARI 416
>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
1vh4_A435 SUFD protein; structural genomics, protein binding 1e-100
4dn7_A429 ABC transporter, ATP-binding protein; structural g 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Length = 435 Back     alignment and structure
 Score =  306 bits (785), Expect = e-100
 Identities = 91/425 (21%), Positives = 166/425 (39%), Gaps = 69/425 (16%)

Query: 59  SLPSSSSSLPQ--------PLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQI 110
            LP+SS++L Q                    Q LL T  P+RK E +++T    + +SQ 
Sbjct: 5   GLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQF 64

Query: 111 QPITRPSSSLDVST---DAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKR 167
             I    S               LV +DG    +   LS+  +G      +         
Sbjct: 65  VSIAGEISPQQRDALALTLDSVRLVFVDGRYVPA---LSDATEGSGYEVSI-------ND 114

Query: 168 VSDFISEFQCGDLFWSINGMGAPDLGVIYVPA---------------------------- 199
               + +    ++F  +    A  +  I V                              
Sbjct: 115 DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYR 174

Query: 200 -------------------EGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTA 240
                                +  ++  +   + +     ++H  L  ++  + H     
Sbjct: 175 HHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHND 234

Query: 241 VRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDH 300
           +     +         GG + RHN   Q  G ++   ++S  + V ++  D  + L  + 
Sbjct: 235 LLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNK 294

Query: 301 PRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQI 360
                RQLHK IV+   G+AVF+G + V ++A +TD      +LL+   A V+ KP L+I
Sbjct: 295 GFCNSRQLHKTIVSDK-GRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEI 353

Query: 361 IADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVV 420
            ADDVKCSHGA +  +++ Q+FY ++RGI+ + A++ ++++F AE+ E      ++ QV+
Sbjct: 354 YADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVL 413

Query: 421 SHVKN 425
           + +  
Sbjct: 414 ARIGQ 418
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
1vh4_A435 SUFD protein; structural genomics, protein binding 100.0
4dn7_A429 ABC transporter, ATP-binding protein; structural g 100.0
1vh4_A435 SUFD protein; structural genomics, protein binding 97.54
4dn7_A429 ABC transporter, ATP-binding protein; structural g 97.19
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Back     alignment and structure
Probab=100.00  E-value=2.2e-79  Score=637.00  Aligned_cols=348  Identities=24%  Similarity=0.344  Sum_probs=314.5

Q ss_pred             hhHHHHHHHHHHHhHcCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCC-----CCCCCCCCCcceEEEECCEEcccccCC
Q 013853           71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL  145 (435)
Q Consensus        71 ~~l~~~R~~A~~~~~~~g~P~~k~E~wkyT~l~~l~~~~~~p~~~~~~-----~~~~~~~~~~~~lvfvnG~~~~~ls~~  145 (435)
                      .||.++|++||+.|.++|||++|.|+||||||+.+....+.+......     ...++ .+.. ++||+||.|.+.+++.
T Consensus        25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~~  102 (435)
T 1vh4_A           25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSDA  102 (435)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSCC
T ss_pred             chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeecccc
Confidence            579999999999999999999999999999999998876544321111     01122 2344 4999999999988762


Q ss_pred             CCCCCCeEEEecccCchhHHHHhhccccccccCchHHHhhhccCCCceEEEecC--------------C-CC--------
Q 013853          146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPA--------------E-GN--------  202 (435)
Q Consensus       146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~--------------~-~~--------  202 (435)
                       .+|+||+|+++.+      ++|++....   .|+|++||+|++++|+|||||+              . .+        
T Consensus       103 -~~~~Gv~~~~~~~------~~~~~~~~~---~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~~~~~~~~  172 (435)
T 1vh4_A          103 -TEGSGYEVSINDD------RQGLPDAIQ---AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAH  172 (435)
T ss_dssp             -CTTSSCEEEEESC------CTTCCCCSS---CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEEEE
T ss_pred             -ccCCCeEEEecch------hhhhhcccC---chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCcccccceee
Confidence             3689999999987      457665432   3999999999999999999999              1 11        


Q ss_pred             ------------------------cceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCC
Q 013853          203 ------------------------DCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG  258 (435)
Q Consensus       203 ------------------------~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg  258 (435)
                                              ..+++|+++||++++||+|+|+++|+|+.+++++.++++.++++|+++|+.+.+|+
T Consensus       173 ~r~lIi~eegs~v~iie~~~~~~~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~  252 (435)
T 1vh4_A          173 YRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGG  252 (435)
T ss_dssp             EEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEECCC
T ss_pred             eEEEEEECCCCEEEEEEEeccCCcccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEEEECC
Confidence                                    12489999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceE
Q 013853          259 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAG  338 (435)
Q Consensus       259 ~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~  338 (435)
                      +++|+++.+.|.|++|.++++|++++.++|++|+++.|+|.+|+|+|++++|||+. |+|+++|+|+|+|.++|++|+|+
T Consensus       253 ~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~~A~~t~a~  331 (435)
T 1vh4_A          253 AVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQHAIKTDGQ  331 (435)
T ss_dssp             SEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECTTCTTEEEE
T ss_pred             ceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEecCCCCCeeE
Confidence            99999999999999999999999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             EEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHH
Q 013853          339 QLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQ  418 (435)
Q Consensus       339 q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~  418 (435)
                      |.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||+.+++++||+|.+|++
T Consensus       332 ~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~eA~~Liv~gF~~~vi~~i~~e~l~~~  411 (435)
T 1vh4_A          332 MTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQ  411 (435)
T ss_dssp             EEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             EEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccc
Q 013853          419 VVSHVKNLMGTTD  431 (435)
Q Consensus       419 l~~~i~~~l~~~~  431 (435)
                      |.+.|+.+|....
T Consensus       412 l~~~i~~~l~~~~  424 (435)
T 1vh4_A          412 VLARIGQRLPGGA  424 (435)
T ss_dssp             HHHHHHTTSTTC-
T ss_pred             HHHHHHHHhhccc
Confidence            9999999997643
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Back     alignment and structure
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A* Back     alignment and structure
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 435
d1vh4a_413 b.80.6.1 (A:) Stabilizer of iron transporter SufD 1e-45
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Length = 413 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

 Score =  160 bits (406), Expect = 1e-45
 Identities = 86/389 (22%), Positives = 160/389 (41%), Gaps = 47/389 (12%)

Query: 82  QTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSSLD---VSTDAQFPSLVLIDGFI 138
           Q LL T  P+RK E +++T    + +SQ   I    S      ++       LV +DG  
Sbjct: 26  QQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRY 85

Query: 139 QNSALNLSNLPDGVYVG-SLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYV 197
             +   LS+  +G     S+     G+   +   +       L  S+  +          
Sbjct: 86  VPA---LSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAK 142

Query: 198 PA---------------------------------------EGNDCYWANSVLEVVIGKG 218
           P                                          +  ++  +   + +   
Sbjct: 143 PLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAAN 202

Query: 219 GKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETEL 278
             ++H  L  ++  + H     +     +         GG + RHN   Q  G ++   +
Sbjct: 203 AHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRI 262

Query: 279 SSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAG 338
           +S  + V ++  D  + L  +      RQLHK IV+   G+AVF+G + V ++A +TD  
Sbjct: 263 NSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDK-GRAVFNGLINVAQHAIKTDGQ 321

Query: 339 QLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKAL 398
               +LL+   A V+ KP L+I ADDVKCSHGA +  +++ Q+FY ++RGI+ + A++ +
Sbjct: 322 MTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMI 381

Query: 399 VFSFGAEVIERFPYPSIRNQVVSHVKNLM 427
           +++F AE+ E      ++ QV++ +   +
Sbjct: 382 IYAFAAELTEALRDEGLKQQVLARIGQRL 410

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
d1vh4a_413 Stabilizer of iron transporter SufD {Escherichia c 100.0
d1vh4a_413 Stabilizer of iron transporter SufD {Escherichia c 97.54
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Stabilizer of iron transporter SufD
family: Stabilizer of iron transporter SufD
domain: Stabilizer of iron transporter SufD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-77  Score=617.44  Aligned_cols=358  Identities=24%  Similarity=0.321  Sum_probs=315.2

Q ss_pred             HHHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHhHcCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCCC----CCC
Q 013853           47 PFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSSS----LDV  122 (435)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~R~~A~~~~~~~g~P~~k~E~wkyT~l~~l~~~~~~p~~~~~~~----~~~  122 (435)
                      +.+++||+..             -.+..+.|+++|++|.++|||++|+|+||||||+.|....+.+.......    ...
T Consensus         4 ~~~~~~~~~~-------------~~~~~~~~~~~l~~f~~~GlPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~   70 (413)
T d1vh4a_           4 QQWHHLFEAE-------------GTKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALA   70 (413)
T ss_dssp             HHHHHHHHC----------------CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHC
T ss_pred             HHHHHHHHhc-------------CCcchHHHHHHHHHHHHcCCCCCCCcCccCCCHHHHhccCCcccCCccCchhhcccc
Confidence            4567777642             23567779999999999999999999999999999988766443222110    011


Q ss_pred             CCCCCcceEEEECCEEcccccCCCCCCCCeEEEecccCchhHHHHhhccccccccCchHHHhhhccCCCceEEEecC---
Q 013853          123 STDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPA---  199 (435)
Q Consensus       123 ~~~~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~---  199 (435)
                      ...+.. ++||+||+|.+.+|+.. .+.|+.+....+....         ......+.|.+||.|++++|++|+||+   
T Consensus        71 ~~~~~~-~ivfvnG~~~~~ls~~~-~~~~i~i~~~~~~~~~---------~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~  139 (413)
T d1vh4a_          71 LTLDSV-RLVFVDGRYVPALSDAT-EGSGYEVSINDDRQGL---------PDAIQAEVFLHLTESLAQSVTHIAVKRGQR  139 (413)
T ss_dssp             CCCCSE-EEEEETTEECGGGSCCC-TTSSCEEEEESCCTTC---------CCCSSCCHHHHHHHHHCSCEEEEEECTTCC
T ss_pred             cccCce-EEEEECCEEchhcccCc-ccCCeEEechHhhhhc---------ccchhhhhhhhhhhhccccceeEeeccceE
Confidence            122344 49999999999988643 4678887765554211         111136899999999999999999998   


Q ss_pred             --------------------------------------------CCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEE
Q 013853          200 --------------------------------------------EGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAH  235 (435)
Q Consensus       200 --------------------------------------------~~~~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~  235 (435)
                                                                  .++..+|+|.++||++++||+|+|+++|+++.++++
T Consensus       140 ~~~PI~i~~~~~~~~~~~~~~~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~  219 (413)
T d1vh4a_         140 PAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHH  219 (413)
T ss_dssp             CSSCEEEEEEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEE
T ss_pred             ecccceeeEeecccccccccccceeeeeeecccchhhhhhhccccccccceecceeEEEecccceeeehhhhhhcccccc
Confidence                                                        122346899999999999999999999999999999


Q ss_pred             EEeEEEEEecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEec
Q 013853          236 IKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAH  315 (435)
Q Consensus       236 ~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~  315 (435)
                      +..+++.++++|.|.++.+.+|+.++|+++++.|.|++|.++++|++++.++|++|+++.+.|.+|+|+|++++|||+. 
T Consensus       220 ~~~~~~~~~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~-  298 (413)
T d1vh4a_         220 FAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-  298 (413)
T ss_dssp             EEEEEEEECTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred             cceeeeecccccceeeeecccccchhhccchhhccccccccceeeccccccchhhhhhhhhhccccccchhhhhhcccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHH
Q 013853          316 SLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETAR  395 (435)
Q Consensus       316 d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~  395 (435)
                      |+|++||+|+|.|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|+
T Consensus       299 d~s~~vf~G~i~V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~  378 (413)
T d1vh4a_         299 DKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQ  378 (413)
T ss_dssp             TTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHH
T ss_pred             ccceeEEeeeecccccchhhhhHHhhhhhcccCCceEEecceEEEecCCeeEEeeeeccCCCHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHhcCCChhHHHHHHHHHHHhhcc
Q 013853          396 KALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGT  429 (435)
Q Consensus       396 ~LLi~gFl~evi~~ip~e~lr~~l~~~i~~~l~~  429 (435)
                      +|||+||+.|++++||+|.+|+++...|++||..
T Consensus       379 ~ll~~gF~~~~~~~~~~~~~~~~~~~~i~~~l~~  412 (413)
T d1vh4a_         379 QMIIYAFAAELTEALRDEGLKQQVLARIGQRLPG  412 (413)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999864
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure