Citrus Sinensis ID: 013866

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
MSPAAGLQAPLLPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRNKS
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHEEEEEEEEHHHcccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
mspaaglqapllpssktekrpsvsgaVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDvlcgkqpegsvHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWegksktpkllpqldnhvsvfdlftAVPVIVTAFTFhfnvhpigfefdkpsdmITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFsqkpllakdTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRdvhgisttrDRIIATVMIVLAVVTSTIAISTNIYSSIRNKS
mspaaglqapllpssktekrpsvsGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTstiaistniyssirnks
MSPAAGLQAPLLPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCliifliiiGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRvfallfvmvfvmlplalfRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRNKS
************************GAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYS******
***************************FNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRN**
********APLLPS*********SGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRNKS
******************KRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRN**
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MSPAAGLQAPLLPSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIRNKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query435 2.2.26 [Sep-21-2011]
Q6DEL1465 Putative sodium-coupled n yes no 0.857 0.802 0.285 1e-31
Q503G8449 Probable sodium-coupled n no no 0.933 0.904 0.254 3e-28
Q28HE5448 Probable sodium-coupled n yes no 0.908 0.881 0.263 1e-25
Q5R9F5462 Putative sodium-coupled n yes no 0.841 0.792 0.261 1e-24
Q9NVC3462 Putative sodium-coupled n yes no 0.841 0.792 0.259 1e-24
A7E3U5463 Putative sodium-coupled n yes no 0.843 0.792 0.261 3e-24
Q8BWH0463 Putative sodium-coupled n no no 0.843 0.792 0.261 5e-24
Q6JWR2463 Putative sodium-coupled n yes no 0.843 0.792 0.261 8e-24
Q5I012 1090 Putative sodium-coupled n no no 0.754 0.300 0.260 8e-23
Q9DCP2505 Sodium-coupled neutral am no no 0.829 0.714 0.265 1e-22
>sp|Q6DEL1|S38A7_DANRE Putative sodium-coupled neutral amino acid transporter 7 OS=Danio rerio GN=slc38a7 PE=2 SV=1 Back     alignment and function desciption
 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 199/403 (49%), Gaps = 30/403 (7%)

Query: 7   LQAPLL-----PSSKTEKRPSVS--GAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIV 59
           LQ+P +     PS   + R   S  GAVF V  + +GAG+++ PA   + G I A V + 
Sbjct: 28  LQSPSVDSVQPPSQSDDSRGGTSSLGAVFIVVNAALGAGLLNFPAAFNMAGGITAGVTLQ 87

Query: 60  IIACLTDISVDFLMRY-TNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLII 118
           +      I+   ++ Y +     STY  V+R   G+A  V  +L + +   G  I FLII
Sbjct: 88  MCMMAFIITGLVILAYCSQVSNESTYQEVVRAVCGKALGVICELAIAVYTFGTCIAFLII 147

Query: 119 IGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSA 178
           IGD L   +  G+++    +E    HW+  R F +    V ++LPL++ + +G  +++S 
Sbjct: 148 IGDQL--DKLIGAINNESEKE-ISLHWYTDRKFTITLTSVLIILPLSIPKEIGFQKYAST 204

Query: 179 ISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFN 238
           +SV +   +V I  ++ +  +W  K  +P ++P      S  D+F A+P I   F  H +
Sbjct: 205 LSV-IGTWYVTI--IVIVKYIWPSKDVSPGIIPV--RPASWTDVFNAMPTICFGFQCHVS 259

Query: 239 VHPIGFEFDKPS--DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGS 296
             P+     KP        V IS++IC  +Y   G+ G+L FG S+  D+L+++  S   
Sbjct: 260 SVPVFNSMKKPEIRPWWGVVTISMIICLFVYTGTGVCGFLSFGSSVSQDVLMSY-PSDDV 318

Query: 297 AISSLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPL-----LAKDTKRFLSIT 351
           A++     + R    + ++  +P+L+F  RA ++ L    K       +AK+ +R +  T
Sbjct: 319 AVA-----IARAFIIICVVTSYPILHFCGRAVLEGLWLRFKGEEVETDVAKERRRRILQT 373

Query: 352 LVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLR 394
           LV    +   A+ IPDI      +G  +A C  F+FPG+ +++
Sbjct: 374 LVWFCLTLILALFIPDIGRVISLIGGLAA-CFIFVFPGLCLIQ 415
Putative sodium-dependent amino acid/proton antiporter.
Danio rerio (taxid: 7955)
>sp|Q503G8|S38A6_DANRE Probable sodium-coupled neutral amino acid transporter 6 OS=Danio rerio GN=slc38a6 PE=2 SV=1 Back     alignment and function description
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function description
>sp|Q5R9F5|S38A7_PONAB Putative sodium-coupled neutral amino acid transporter 7 OS=Pongo abelii GN=SLC38A7 PE=2 SV=1 Back     alignment and function description
>sp|Q9NVC3|S38A7_HUMAN Putative sodium-coupled neutral amino acid transporter 7 OS=Homo sapiens GN=SLC38A7 PE=2 SV=1 Back     alignment and function description
>sp|A7E3U5|S38A7_BOVIN Putative sodium-coupled neutral amino acid transporter 7 OS=Bos taurus GN=SLC38A7 PE=2 SV=1 Back     alignment and function description
>sp|Q8BWH0|S38A7_MOUSE Putative sodium-coupled neutral amino acid transporter 7 OS=Mus musculus GN=Slc38a7 PE=1 SV=1 Back     alignment and function description
>sp|Q6JWR2|S38A7_RAT Putative sodium-coupled neutral amino acid transporter 7 OS=Rattus norvegicus GN=Slc38a7 PE=2 SV=1 Back     alignment and function description
>sp|Q5I012|S38AA_MOUSE Putative sodium-coupled neutral amino acid transporter 10 OS=Mus musculus GN=Slc38a10 PE=1 SV=2 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
224112417435 amino acid transporter [Populus trichoca 0.997 0.997 0.767 0.0
255559605437 amino acid transporter, putative [Ricinu 1.0 0.995 0.773 0.0
225448601443 PREDICTED: probable sodium-coupled neutr 1.0 0.981 0.735 0.0
356540026436 PREDICTED: probable sodium-coupled neutr 1.0 0.997 0.708 0.0
409691597436 amino acid transporter protein [Glycine 1.0 0.997 0.701 1e-176
357492903429 Sodium-coupled neutral amino acid transp 0.974 0.988 0.703 1e-172
357461473 586 Sodium-coupled neutral amino acid transp 0.997 0.740 0.673 1e-167
356501191434 PREDICTED: putative sodium-coupled neutr 0.993 0.995 0.688 1e-167
449491678434 PREDICTED: LOW QUALITY PROTEIN: sodium-c 0.995 0.997 0.662 1e-166
449457431434 PREDICTED: sodium-coupled neutral amino 0.995 0.997 0.658 1e-165
>gi|224112417|ref|XP_002316182.1| amino acid transporter [Populus trichocarpa] gi|222865222|gb|EEF02353.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/435 (76%), Positives = 383/435 (88%), Gaps = 1/435 (0%)

Query: 1   MSPAAGLQAPLLPSSKT-EKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIV 59
           MSPA G++APLLP  K  EKR SV GAVFNV+TSIIGAGIMSIPAT+KVLGVIPA VLI+
Sbjct: 1   MSPATGIRAPLLPERKEGEKRASVHGAVFNVSTSIIGAGIMSIPATLKVLGVIPALVLIM 60

Query: 60  IIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIII 119
           IIA L DISV+FL+RYT +GE +TYAGVMRE+FGR GSV VQ+CVMITNLGCLI++LIII
Sbjct: 61  IIAWLVDISVEFLLRYTLSGELTTYAGVMREAFGRVGSVTVQICVMITNLGCLIVYLIII 120

Query: 120 GDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAI 179
           GDVL G   +GSVHLGVLQEWFG HWWN+R FALLFV++FV+LPL LFRRV SLRFSSAI
Sbjct: 121 GDVLSGNVHDGSVHLGVLQEWFGIHWWNSRAFALLFVVIFVVLPLVLFRRVESLRFSSAI 180

Query: 180 SVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNV 239
           SVLLAV+FV ICSVMAIYA+ EGK+K+P+LLP LDN  S FDLFTA PVIVTAFTFHFNV
Sbjct: 181 SVLLAVVFVGICSVMAIYALIEGKTKSPRLLPHLDNKTSFFDLFTAAPVIVTAFTFHFNV 240

Query: 240 HPIGFEFDKPSDMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAIS 299
           HPI FE  KPSDM++AV+ISL++CA IYF++G+ GYLLFGESI++DIL+NFDQSS + I 
Sbjct: 241 HPISFELGKPSDMVSAVKISLLLCAGIYFTIGISGYLLFGESIVADILVNFDQSSDTTIG 300

Query: 300 SLLNDLVRLSYALHLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSY 359
           +LLND VRLSYA HLML FP+LNFSLRANIDELLF +KPLLA D+ RF+S+TL LLVF+Y
Sbjct: 301 ALLNDTVRLSYAFHLMLAFPLLNFSLRANIDELLFPKKPLLATDSIRFVSLTLALLVFAY 360

Query: 360 TAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTS 419
            AAI IP+IWY FQF+GSTSAVCLAFIFPG IVLRDVH ISTTRD+I+A VMI+LAV TS
Sbjct: 361 LAAIAIPNIWYLFQFMGSTSAVCLAFIFPGAIVLRDVHSISTTRDKIVAAVMIILAVATS 420

Query: 420 TIAISTNIYSSIRNK 434
           TIA+STNIYS +RNK
Sbjct: 421 TIALSTNIYSLVRNK 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255559605|ref|XP_002520822.1| amino acid transporter, putative [Ricinus communis] gi|223539953|gb|EEF41531.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225448601|ref|XP_002278665.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6 [Vitis vinifera] gi|297736531|emb|CBI25402.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540026|ref|XP_003538492.1| PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] Back     alignment and taxonomy information
>gi|409691597|gb|AFV36700.1| amino acid transporter protein [Glycine max] gi|409691607|gb|AFV36705.1| amino acid transporter protein [Glycine max] gi|409691624|gb|AFV36716.1| amino acid transporter protein [Glycine max] Back     alignment and taxonomy information
>gi|357492903|ref|XP_003616740.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355518075|gb|AES99698.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|357461473|ref|XP_003601018.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355490066|gb|AES71269.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501191|ref|XP_003519410.1| PREDICTED: putative sodium-coupled neutral amino acid transporter 7-like [Glycine max] Back     alignment and taxonomy information
>gi|449491678|ref|XP_004158971.1| PREDICTED: LOW QUALITY PROTEIN: sodium-coupled neutral amino acid transporter 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457431|ref|XP_004146452.1| PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query435
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.967 0.967 0.610 6.7e-136
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.981 0.970 0.583 2.2e-130
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.967 0.923 0.446 6.8e-95
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.986 0.932 0.435 1.8e-94
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.965 0.858 0.389 4.8e-78
ZFIN|ZDB-GENE-040801-266465 slc38a7 "solute carrier family 0.954 0.892 0.25 3e-30
ZFIN|ZDB-GENE-050522-51449 slc38a6 "solute carrier family 0.940 0.910 0.230 3e-26
UNIPROTKB|F1P9B0428 SLC38A6 "Uncharacterized prote 0.586 0.595 0.253 7.2e-23
UNIPROTKB|E1BND4456 SLC38A6 "Uncharacterized prote 0.590 0.563 0.254 1.2e-22
UNIPROTKB|F1SRV0456 SLC38A6 "Uncharacterized prote 0.590 0.563 0.254 1.3e-22
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
 Identities = 257/421 (61%), Positives = 317/421 (75%)

Query:    13 PSSKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFL 72
             PSS      S SG VFNV+TSIIGAGIMS+PA  KVLG++PAF++I IIA L+ ISV FL
Sbjct:    15 PSSSENHGSSTSGIVFNVSTSIIGAGIMSMPAAFKVLGIVPAFLIITIIAWLSTISVGFL 74

Query:    73 MRYTNAGETSTYAGVMRESFGRAGSVAVQLCVMITNLGCXXXXXXXXGDVLCGKQPEGSV 132
             M+ T AGE++TYAGVM+ESFG+ GS+AVQ+  M+   GC        GDVL G +  G  
Sbjct:    75 MKSTLAGESTTYAGVMKESFGKTGSIAVQIATMVATFGCMIIFSIIIGDVLSGNENGGPE 134

Query:   133 HLGVLQEWFGFHWWNTRXXXXXXXXXXXXXXXXXXRRVGSLRFSSAISVLLAVIFVAICS 192
             H+GVLQEWFG +WWNTR                  RRV  L  SSA+S LLAV+FV I S
Sbjct:   135 HIGVLQEWFGSYWWNTRIFALLFVYGFVLLPLVLRRRVERLAISSAVSFLLAVLFVVISS 194

Query:   193 VMAIYAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDM 252
             V+AI A+  G++K P+L P+L N  S + LFTA PVIVTAFTFHFNVHPIGFE   P  +
Sbjct:   195 VLAISALVNGQTKNPRLFPELSNGGSFWQLFTASPVIVTAFTFHFNVHPIGFELKDPLQV 254

Query:   253 ITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYAL 312
             I A +IS+++CAAIYF+ GLFGYLLFG++ MSDIL+NFDQSSGS+I SLLND+VRLSY L
Sbjct:   255 IPATKISVILCAAIYFATGLFGYLLFGDATMSDILVNFDQSSGSSIGSLLNDIVRLSYVL 314

Query:   313 HLMLVFPMLNFSLRANIDELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFF 372
             HLMLVFP+LNFSLRAN+DELL+ +KP L KDTKRF+ +TL LL+  + +AI +PDIWYFF
Sbjct:   315 HLMLVFPLLNFSLRANLDELLYPKKPSLEKDTKRFIGLTLALLICCFLSAIAVPDIWYFF 374

Query:   373 QFLGSTSAVCLAFIFPGVIVLRDVHGISTTRDRIIATVMIVLAVVTSTIAISTNIYSSIR 432
             QF+GST  V +AFIFP  IVLR++HG+ST+R++I+A +M+VLAV TS IAISTN+YS   
Sbjct:   375 QFMGSTITVSIAFIFPAAIVLRNIHGVSTSREKIVAAIMLVLAVATSIIAISTNLYSLAA 434

Query:   433 N 433
             N
Sbjct:   435 N 435
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-266 slc38a7 "solute carrier family 38, member 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-51 slc38a6 "solute carrier family 38, member 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9B0 SLC38A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND4 SLC38A6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRV0 SLC38A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 3e-34
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-24
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 4e-21
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 1e-09
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 6e-09
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  131 bits (332), Expect = 3e-34
 Identities = 101/384 (26%), Positives = 169/384 (44%), Gaps = 39/384 (10%)

Query: 26  AVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFL--MRYTNAGET-- 81
           AVFN+  +IIGAG++S+P   K LG IP  +L+VI+  ++  ++  L             
Sbjct: 8   AVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGK 67

Query: 82  --STYAGVMRESFGRAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQE 139
              +Y  +    FG  G + +   +++   G  I +LI  GD           +L  + +
Sbjct: 68  RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGD-----------NLPAIFD 116

Query: 140 WFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSS---AISVLLAVIFVAICSVMAI 196
            F      + V+  + +   + +PL+    + +L   S   A+S L  VI V   + + +
Sbjct: 117 SFFDTCHISLVY-FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGV 175

Query: 197 YAVWEGKSKTPKLLPQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPSDMITAV 256
                  S   K        + +  LF A+ +IV AF  H  + PI      PS      
Sbjct: 176 LTAQGVGSLGAKTN------IKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMT 229

Query: 257 RISLV---ICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALH 313
           ++ L    I   +Y  VGL GYL FG ++  +IL+N  +S          D+  L   LH
Sbjct: 230 KVLLTAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLI------DIANLLLVLH 283

Query: 314 LMLVFPMLNFSLRANIDELLFSQKPLLAKDTK---RFLSITLVLLVFSYTAAITIPDIWY 370
           L+L +P+  F +R  ++ LLF +      + K     + I   L+V +Y  AI++P +  
Sbjct: 284 LLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGD 343

Query: 371 FFQFLGSTSAVCLAFIFPGVIVLR 394
           F   +G+TS   L FI P +  L+
Sbjct: 344 FLSLVGATSGAPLTFILPPLFHLK 367

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 435
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK10483414 tryptophan permease; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.94
PRK13629443 threonine/serine transporter TdcC; Provisional 99.93
TIGR00814397 stp serine transporter. The HAAAP family includes 99.89
PRK10655438 potE putrescine transporter; Provisional 99.77
PRK10249458 phenylalanine transporter; Provisional 99.74
PRK10644445 arginine:agmatin antiporter; Provisional 99.74
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.73
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.73
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.72
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.72
PRK15049499 L-asparagine permease; Provisional 99.72
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.71
PRK11387471 S-methylmethionine transporter; Provisional 99.71
PRK11021410 putative transporter; Provisional 99.71
PRK10746461 putative transport protein YifK; Provisional 99.7
PRK10836489 lysine transporter; Provisional 99.7
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.69
PRK10238456 aromatic amino acid transporter; Provisional 99.69
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.68
TIGR00909429 2A0306 amino acid transporter. 99.68
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.67
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.67
PRK10580457 proY putative proline-specific permease; Provision 99.65
TIGR00911501 2A0308 L-type amino acid transporter. 99.64
TIGR00913478 2A0310 amino acid permease (yeast). 99.63
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.62
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.62
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.62
TIGR00930 953 2a30 K-Cl cotransporter. 99.6
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.54
COG0833541 LysP Amino acid transporters [Amino acid transport 99.53
PF03845320 Spore_permease: Spore germination protein; InterPr 99.52
COG0531466 PotE Amino acid transporters [Amino acid transport 99.45
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.39
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.38
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.36
PRK15238496 inner membrane transporter YjeM; Provisional 99.32
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.23
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.21
KOG3832319 consensus Predicted amino acid transporter [Genera 99.06
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.04
COG3949349 Uncharacterized membrane protein [Function unknown 98.99
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.71
COG1457442 CodB Purine-cytosine permease and related proteins 98.71
PRK11375484 allantoin permease; Provisional 98.69
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.53
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.52
PRK12488549 acetate permease; Provisional 98.51
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.5
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.49
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.48
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.48
TIGR00813407 sss transporter, SSS family. have different number 98.39
PRK11017404 codB cytosine permease; Provisional 98.35
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.32
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.3
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.22
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.08
PRK09395551 actP acetate permease; Provisional 98.02
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.77
PRK10484523 putative transporter; Provisional 97.76
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.75
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.71
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.69
PRK00701439 manganese transport protein MntH; Reviewed 97.66
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.65
PRK15419502 proline:sodium symporter PutP; Provisional 97.63
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.53
COG4147529 DhlC Predicted symporter [General function predict 97.36
COG1966 575 CstA Carbon starvation protein, predicted membrane 97.21
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.94
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.93
PRK15015 701 carbon starvation protein A; Provisional 96.88
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 96.6
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.53
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.36
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.83
KOG2466572 consensus Uridine permease/thiamine transporter/al 95.22
PRK15433439 branched-chain amino acid transport system 2 carri 92.58
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.43
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 92.06
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 91.94
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 91.14
PHA02764399 hypothetical protein; Provisional 87.89
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 85.62
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.95
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-54  Score=427.37  Aligned_cols=395  Identities=21%  Similarity=0.345  Sum_probs=312.0

Q ss_pred             CCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhChhHHHH
Q 013866           20 RPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGRAGSVA   99 (435)
Q Consensus        20 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~~   99 (435)
                      ..|..++++|++|+++|+|+|+||++|+++||+.|++++++++.++.|+.+++.+++++.+.++|+|++++++||+++++
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~  138 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY  138 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence            34668999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchhhHHHHH
Q 013866          100 VQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSLRFSSAI  179 (435)
Q Consensus       100 ~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l~~~s~~  179 (435)
                      +++.+.+.++|.|++|+++.+|.++.++++...     +++.+.. ...+..+ ...+.++++|++++|+++++++.|.+
T Consensus       139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-----~~~~~~~-~~~r~~~-~~i~~~i~lPLs~~r~i~~L~~~S~i  211 (467)
T PTZ00206        139 VAATRAFHGFSACVAYVISVGDILSATLKGTNA-----PDFLKQK-SGNRLLT-SLMWLCFMLPLVIPRHIDSLRYVSTI  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-----cchhhhc-cCcEEee-eehhhhHhhhcccccchHHHHHHHHH
Confidence            999999999999999999999999876653211     1111111 1122222 23445678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----C--CCCCcccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc--
Q 013866          180 SVLLAVIFVAICSVMAIYAVWEGKSKTPKL-----L--PQLDNHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS--  250 (435)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~--  250 (435)
                      ++.+.+...+.+++   +...++..+..+.     +  ++...++...+.+.++++++|||.||.+.+++++|||||+  
T Consensus       212 ~~~~i~~~vi~ivi---~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~  288 (467)
T PTZ00206        212 AVSFMVYLVIVIVV---HSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVG  288 (467)
T ss_pred             HHHHHHHHHhhhhh---hhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchh
Confidence            98644433332222   2221221111000     0  0111111223578899999999999999999999999866  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcchhhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 013866          251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMSDILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLRANID  330 (435)
Q Consensus       251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  330 (435)
                      |+.+++..++.+++++|..+|+.||+.||++++++++.|+++.+     ++...+.++...+.+..+||++.+|+|+.++
T Consensus       289 ~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~  363 (467)
T PTZ00206        289 KFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALY  363 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            88899999999999999999999999999999999999996543     3566677888899999999999999999999


Q ss_pred             HhhccCCcccccccchhhhHHHHHHHHHHHHHhhcCCHHHHHHhhhhhhhhhHHHhhhhHHHHHh---cCCCCchhhhHH
Q 013866          331 ELLFSQKPLLAKDTKRFLSITLVLLVFSYTAAITIPDIWYFFQFLGSTSAVCLAFIFPGVIVLRD---VHGISTTRDRII  407 (435)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~G~~~~~~~~~i~P~~~~~~~---~~~~~~~~~~~~  407 (435)
                      +....+.++  .+.+++...+..+.+.+.++|+++|+++.+++++|+++++.++|++|+++|++.   ++++..+++.+.
T Consensus       364 ~~~~~~~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~  441 (467)
T PTZ00206        364 DVIGWDARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYIS  441 (467)
T ss_pred             HHhCCCccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHH
Confidence            886333222  222333334455566778899999999999999999999999999999999983   233334445678


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhh
Q 013866          408 ATVMIVLAVVTSTIAISTNIYSSI  431 (435)
Q Consensus       408 ~~~~~~~g~v~~v~g~~~~i~~i~  431 (435)
                      ++.++++|++..+.|||+++++.+
T Consensus       442 ~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        442 TYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHhheEEecchhHhhHHh
Confidence            999999999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query435
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 58/343 (16%), Positives = 99/343 (28%), Gaps = 97/343 (28%)

Query: 115 FLIIIGDVLCGKQPEGSVHLGVLQEW-------FGFHWWNTRVFALLFVMVFVMLPL-AL 166
            ++I G +  GK     V L V   +       F   W N            V+  L  L
Sbjct: 152 NVLIDGVLGSGKT---WVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKL 205

Query: 167 FRRVGS-----LRFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLDN-----H 216
             ++          SS I + +  I   +  ++               L  L N      
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-------SKPYENCLLVLLNVQNAKA 258

Query: 217 VSVFD-----LFTAVPVIVTAF-----TFHFNV--HPIGFEFDKPSDM------ITAVRI 258
            + F+     L T     VT F     T H ++  H +    D+   +           +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 259 SLVICAAIYFSVGLFGYLLFGESIMSDIL--INFDQSSGSAISSLLNDL----VRLSYAL 312
              +       + +    +       D    +N D+ + + I S LN L     R  +  
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMF-- 375

Query: 313 HLMLVFP-----------MLNFSLRANIDELL---FSQKPLLAKDTKRFL----SITLVL 354
             + VFP           ++ F +  +   ++     +  L+ K  K       SI L L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 355 -------------LVFSYTAAIT------IPDIW--YFFQFLG 376
                        +V  Y    T      IP     YF+  +G
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.83
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.72
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.58
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.92
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.26
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.92
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 91.02
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.83  E-value=8.9e-18  Score=165.41  Aligned_cols=357  Identities=10%  Similarity=0.011  Sum_probs=214.4

Q ss_pred             CCCCCCCchHHHHHHHHHHHHhhhhchHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCHHHHHHHHhC
Q 013866           15 SKTEKRPSVSGAVFNVATSIIGAGIMSIPATIKVLGVIPAFVLIVIIACLTDISVDFLMRYTNA-GETSTYAGVMRESFG   93 (435)
Q Consensus        15 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~-~~~~~y~~l~~~~~G   93 (435)
                      ++++|+.+.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+ ++..+..+.+++.+|
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG   82 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence            3457899999999999999999999999999888896 48899999999999999999996654 456688889999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCccccchhhhhhcCccccchHHHHHHHHHHHHhccccccccchh
Q 013866           94 RAGSVAVQLCVMITNLGCLIIFLIIIGDVLCGKQPEGSVHLGVLQEWFGFHWWNTRVFALLFVMVFVMLPLALFRRVGSL  173 (435)
Q Consensus        94 ~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~l  173 (435)
                      |+.+++..+..++........+....++.++..+++.           +.+ +......+   ..+.+.-....+..+..
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~---~~~~~~~~in~~g~~~~  147 (445)
T 3l1l_A           83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------KDP-WVLTITCV---VVLWIFVLLNIVGPKMI  147 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----------GSH-HHHHHHHH---HHHHHHHHHHHHCHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----------ccc-HHHHHHHH---HHHHHHHHHHHhchHHH
Confidence            9999999999999888788888888888886554321           000 11111111   11122222223344444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC--cccchhhhhhhhhhhhhhhhcccchhhhhhcCCCCc-
Q 013866          174 RFSSAISVLLAVIFVAICSVMAIYAVWEGKSKTPKLLPQLD--NHVSVFDLFTAVPVIVTAFTFHFNVHPIGFEFDKPS-  250 (435)
Q Consensus       174 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-  250 (435)
                      ..++.+.....+..+++   ..+......  +.....+..+  ...++.++..++....|+|.|.+......+|+|||+ 
T Consensus       148 ~~~~~~~~~~~i~~~~~---~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r  222 (445)
T 3l1l_A          148 TRVQAVATVLALIPIVG---IAVFGWFWF--RGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKR  222 (445)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHTTSTTC--CCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHh--ChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc
Confidence            44443333222222111   111111111  1111111111  122356788899999999999999999999999997 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhHhcCCCcch----hhhcCCCcCCcchhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013866          251 DMITAVRISLVICAAIYFSVGLFGYLLFGESIMS----DILINFDQSSGSAISSLLNDLVRLSYALHLMLVFPMLNFSLR  326 (435)
Q Consensus       251 ~~~~~~~~s~~~~~~~y~~~~~~gy~~fg~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  326 (435)
                      +.+|++..+..++.++|....+......+.+...    +....+..    ..+++...+..+...+..+.+.....+...
T Consensus       223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s  298 (445)
T 3l1l_A          223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARM----ALGDTAGAIVSFCAAAGCLGSLGGWTLLAG  298 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHH----HHCTTHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999988777666543211    11110000    011344455566666666666666666666


Q ss_pred             HHHHHhhccCCccc-----c-cccchhhhHHHHHHHHHHHHHhh--c----CCHHHHHHhhhhhhhhhHHHhhhhHHHHH
Q 013866          327 ANIDELLFSQKPLL-----A-KDTKRFLSITLVLLVFSYTAAIT--I----PDIWYFFQFLGSTSAVCLAFIFPGVIVLR  394 (435)
Q Consensus       327 ~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~a~~--~----p~~~~~~~~~G~~~~~~~~~i~P~~~~~~  394 (435)
                      +.+...-.++.-++     + .+.+.+..  .+...++.++...  .    ..++.+.++.+  ....+.|.++.+.+++
T Consensus       299 R~~~~~a~dg~lP~~~~~~~~~~~P~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~  374 (445)
T 3l1l_A          299 QTAKAAADDGLFPPIFARVNKAGTPVAGL--IIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLL  374 (445)
T ss_dssp             HHHHHHHHTTSSCGGGGCCCTTCCCHHHH--HHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHhcCCCCCCHHHH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            66555443222111     0 11122211  1111122222222  2    23555555543  3567888889888888


Q ss_pred             hcCCCC
Q 013866          395 DVHGIS  400 (435)
Q Consensus       395 ~~~~~~  400 (435)
                      .+++++
T Consensus       375 ~r~~~~  380 (445)
T 3l1l_A          375 LGHGHF  380 (445)
T ss_dssp             HHSSSS
T ss_pred             HhhcCc
Confidence            765543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query435
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 89.87
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.87  E-value=7.2  Score=35.73  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             CCchHHHHHHHHHHHHhhhhc-hHHHHHHh-hC---hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHhCh
Q 013866           20 RPSVSGAVFNVATSIIGAGIM-SIPATIKV-LG---VIPAFVLIVIIACLTDISVDFLMRYTNAGETSTYAGVMRESFGR   94 (435)
Q Consensus        20 ~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~-~G---~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~   94 (435)
                      =.|..+.++..++..+|.|-+ -.||-..+ .|   ..+=+++++++|.=..+--..+.|..++.+...+..+.....++
T Consensus         4 W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCS
T ss_pred             CCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccC
Confidence            357788999999999999875 58998654 45   33344455555555555556677777777888898888877764


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 013866           95 AGSVAVQLCVMITNLGCLIIFLIIIG  120 (435)
Q Consensus        95 ~~~~~~~~~~~~~~~g~~~~y~~~~~  120 (435)
                      +....+.....+.++..++-|....+
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~  109 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIES  109 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHH
Confidence            43333444444444444444444443