Citrus Sinensis ID: 013871

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
Protein Sequence
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKAAEAAAAGI
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEEEcccccccccEEEEEcccccEEEEEEEccccccccccEEEcccccEEEEEcccEEEEEEcccccccEEEEEEEccEEEEEEEcccccEEEEEEccccccccEEEEEEccccccccEEEEEEEEEccEEEEEEcccccEEEEEEEEcccccccEEEccEEEEEEEcccccEEEEEccccccEEEEEEEEcccEEEEEEEccccEEEEEcccccEEEEccccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEccccccccccEEEEEccccEEEEEEEccEEEEEEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccEEEEEccccccccccEEEEEEccccEEEEEccccccccccccEEEccccHHEEEEcccEEEEEEccccccccccEEEEcccEEEEEccccccEEEEEEEccccccEEEEEEEcccccccccHEEccEEEccEEEEEEcccccEEEEEEEEccccccccEEccEEEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccccEEEEccccEEEEEcccccccEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEEccccEEEEEcccccEEEEEEcccccEccccEEEEEEcccEEEEccHHHHHEEEccccccccccccHcHccccccccccccHHHHHcHHHHHcccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLLLLTCLRVGLIIQTfqksstpqekNVILWKTETGEAVYQLFQKNmtkttwpsirfssdEAVACRMatneiqffdttdfpkgilyrlrvpgvaafevskapgshvavfvpeskgspasvqIYACgkdlqsqplarrsffRCSTVQLNWNRGSTGLLAVAqsdvdktnqsyygesklnylttdgtheglvplrkegpvhdvqwsysgsefavvygfmpasatifnkkcrpilelgsgpyntvrwnpkgkflclagfgnlpgdmafwdyvdgkqlgttraecsvtsewspdgryfmtattaprlqidngikifhhngSLFFKKMFDKLFqaewkpvspdkfgdISELIKSVGSLKvaetksqgsgsasrkaapsnptatkpaayrpphaKQAAAIQAEllgesptpemsKNALRNKKKREKQKEKKAAEAAAAGI
Flexible Loop (DISEMBL)
MLLLLTCLRVGLIiqtfqksstpqekNVILWKTETGEAVYQLFQKNmtkttwpsIRFSSDEAVACRMATNEiqffdttdfPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEcsvtsewspdgryFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAetksqgsgsasrkaapsnpTATKPAAYRPPHAKQAAAIQAELlgesptpemsknalrnkkkrekqkeKKAAEAAAAGI
Low Complexity Region (SEG)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNkkkrekqkekkaaeaaaaGI
Disordered region (IsUnstruct)
*LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPE*****ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIK**************************************************************************************
Disordered Region (DISOPRED)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPD************************************************************************************************
Disordered Region (DISEMBL)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL*************************************AAAIQAELLGESP*******************************
Disordered Region (DISPRO)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI*******************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSxxxxxxxxxxxxxxxxxxxxxxxxGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	434	2.2.26 [Sep-21-2011]
O74965	576	Eukaryotic translation in	yes	no	0.813	0.612	0.371	5e-71
Q4QRJ7	580	Eukaryotic translation in	yes	no	0.864	0.646	0.360	6e-68
Q9BY44	585	Eukaryotic translation in	yes	no	0.910	0.675	0.355	7e-67
Q8BJW6	581	Eukaryotic translation in	yes	no	0.873	0.652	0.376	1e-66
Q54PV7	608	Eukaryotic translation in	yes	no	0.820	0.585	0.339	8e-66
Q5ZKC1	586	Eukaryotic translation in	yes	no	0.877	0.650	0.368	3e-65
Q7ZY11	582	Eukaryotic translation in	N/A	no	0.861	0.642	0.362	2e-61
Q9VNX8	638	Eukaryotic translation in	yes	no	0.804	0.547	0.357	3e-59
Q19052	570	Eukaryotic translation in	yes	no	0.741	0.564	0.347	2e-55
P53235	642	Eukaryotic translation in	yes	no	0.963	0.651	0.272	7e-45

>sp|O74965|EIF2A_SCHPO Eukaryotic translation initiation factor 2A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4B4.04 PE=3 SV=1

 Score =  268 bits (686), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 223/371 (60%), Gaps = 18/371 (4%)

Query: 22  TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP 81
           TP++ N+ +W TETG+ V+   Q+N  +T W +++++ DE++A R+ TNE+ F++T +  
Sbjct: 101 TPKQ-NMKVWNTETGQLVFSFVQRN--QTGW-NLQYTCDESLAARLVTNEVHFYETGNMS 156

Query: 82  KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR 141
           KG + +LRV G++ F +S      VAVF+PE KG+PASV+ Y+      + PL++++FF+
Sbjct: 157 KGPIAKLRVEGISDFALSPGQNHAVAVFIPEKKGAPASVRTYSIPN--FNSPLSQKTFFK 214

Query: 142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV 201
              VQ  WN   T LL + Q++VDK+N++YYGE+ L  L   G  +  V L +EGP+HDV
Sbjct: 215 ADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGETNLYLLGITGQFDCRVDLDREGPIHDV 274

Query: 202 QWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPG 261
            W+    EF +VYG+MPA   IF+ +   +  +   P NT+ ++P  +++ LAGFGNL G
Sbjct: 275 CWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPAPRNTLIFSPNSRYILLAGFGNLQG 334

Query: 262 DMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
            +  +D  +  K++ T  A      E+SPD ++ +TA T+PRL++DN IKI+H  G+  F
Sbjct: 335 SIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITGAPMF 394

Query: 321 KKMFDKLFQAEW--KPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTAT 378
            + F++L+QA W  +P++P    +         +L  A   S  +  AS     + P+  
Sbjct: 395 YEEFNELYQAFWRPRPLNPTLLQN---------ALTSASLPSPPTPHASASKLAAKPSVK 445

Query: 379 KPAAYRPPHAK 389
              AYRPP A+
Sbjct: 446 PAGAYRPPGAR 456

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4QRJ7|EIF2A_DANRE Eukaryotic translation initiation factor 2A OS=Danio rerio GN=eif2a PE=2 SV=1

 Score =  258 bits (659), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/449 (36%), Positives = 238/449 (53%), Gaps = 74/449 (16%)

Query: 13  IIQTFQKSSTPQ-----EKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACR 66
           ++ T+Q+ +  Q     E N+ LW  +TG  +   +QK MT   W PS  ++ DE+++ R
Sbjct: 88  VLATWQQYTKTQDNPQGEANLQLWDLQTGACMKAFYQKKMT--GWCPS--WADDESISVR 143

Query: 67  MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIY 123
              NE+ FF+  +F + I  +L +  V+ F +S  PGS    VAV+VP SKG+P+ V++Y
Sbjct: 144 NVNNELHFFENNNF-ETIANKLHLQKVSEFALS--PGSQPSKVAVYVPGSKGAPSFVRLY 200

Query: 124 --------ACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES 175
                    C        LA +SFF+   V + WN+ +T +L  A ++VDKT  SYYGE 
Sbjct: 201 QYPNFGGPTCA-------LANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQ 253

Query: 176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG 235
            L+Y+ T+G    +V L K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G
Sbjct: 254 TLHYVATNG-ESAVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFG 312

Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 295
           +GP N   ++P+G  L LAGFGNL G M  WD    KQ+   +AE +    W PDG + +
Sbjct: 313 TGPRNAAFYSPQGHILVLAGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIV 372

Query: 296 TATTAPRLQIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKP----VSPDKFGDISELIK 348
           TAT +PRL+  NG KI+H+ G++ +K       +L++  W+P    V P++      L  
Sbjct: 373 TATCSPRLRASNGYKIWHYTGTVLYKHETPSGKELWEVLWQPFPAGVFPERAVKYQALPS 432

Query: 349 SVGSLKVAETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM 407
            +GS                       T  KPA AYRPP  +      +  L E   P+ 
Sbjct: 433 ELGS-----------------------TEAKPAQAYRPPALRNKPQTASSKLHEEEPPQN 469

Query: 408 -----------SKNALRNKKKREKQKEKK 425
                      SK AL+N+K+RE +K  K
Sbjct: 470 MKPGAAGEKQPSKAALKNQKRREAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Danio rerio (taxid: 7955)

>sp|Q9BY44|EIF2A_HUMAN Eukaryotic translation initiation factor 2A OS=Homo sapiens GN=EIF2A PE=1 SV=3

 Score =  254 bits (650), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/453 (35%), Positives = 233/453 (51%), Gaps = 58/453 (12%)

Query: 2   LLLLTCLRV---GLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTW- 52
           LL   CL       ++ T+Q  +T ++      N+ L+  +TG  +    QK M    W 
Sbjct: 75  LLKAVCLEFSPKNTVLATWQPYTTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQ--NWC 132

Query: 53  PSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVP 111
           PS  +S DE +  R   NE+ FF+  +F   I  +L +  +  F +S  P  + VAV+VP
Sbjct: 133 PS--WSEDETLCARNVNNEVHFFENNNF-NTIANKLHLQKINDFVLSPGPQPYKVAVYVP 189

Query: 112 ESKGSPASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS 170
            SKG+P+ V++Y           LA +SFF+   V + WN+ +T +L +A +DVDKT  S
Sbjct: 190 GSKGAPSFVRLYQYPNFAGPHAALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGAS 249

Query: 171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP 230
           YYGE  L+Y+ T+G    +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P
Sbjct: 250 YYGEQTLHYIATNG-ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDP 308

Query: 231 ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPD 290
           + + G+GP N   ++P G  L LAGFGNL G M  WD  + K +    A  S    W PD
Sbjct: 309 VFDFGTGPRNAAYYSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPD 368

Query: 291 GRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISE 345
           G + +TAT APRL+++NG KI+H+ GS+  K  +D     +L+Q  W+P     F     
Sbjct: 369 GEHILTATCAPRLRVNNGYKIWHYTGSILHK--YDVPSNAELWQVSWQPFLDGIF----- 421

Query: 346 LIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGES 402
                            + + + +A PS     +P    AYRPP  +      ++L  E 
Sbjct: 422 ----------------PAKTITYQAVPSEVPNEEPKVATAYRPPALRNKPITNSKLHEEE 465

Query: 403 PTPEM----------SKNALRNKKKREKQKEKK 425
           P   M          SK AL+N++K E +K  K
Sbjct: 466 PPQNMKPQSGNDKPLSKTALKNQRKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Homo sapiens (taxid: 9606)

>sp|Q8BJW6|EIF2A_MOUSE Eukaryotic translation initiation factor 2A OS=Mus musculus GN=Eif2a PE=2 SV=2

 Score =  254 bits (649), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/433 (37%), Positives = 226/433 (52%), Gaps = 54/433 (12%)

Query: 16  TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
           T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct: 97  TTSKDGTAGTPNLQLYDMKTGACLKSFIQKKMQ--NWCPS--WSDDEIICARNVNNEVHF 152

Query: 75  FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGKDLQS 131
           F+  +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y        
Sbjct: 153 FENNNF-NTIANKLHLQKVNDFNLS--PGTQPYKVAVYVPGSKGAPSFVRLYQYPNFAGP 209

Query: 132 QP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           Q  LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYGE  L+Y+ T+G    +V
Sbjct: 210 QAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNG-ESAVV 268

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
            L K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  
Sbjct: 269 QLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHI 328

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG K
Sbjct: 329 LVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYK 388

Query: 311 IFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGS 365
           I+H+ GSL  K  +D     +L+Q  W+P     F D        G       K Q    
Sbjct: 389 IWHYTGSLLHK--YDVPSNGELWQVSWQP-----FLD--------GIFPAKTIKYQ---- 429

Query: 366 ASRKAAPSNPTATKP---AAYRPPHAKQAAAIQAELLGESPTPEM----------SKNAL 412
               A PS   + +P    AYRPP  +      ++L  E P   M          SK AL
Sbjct: 430 ----AVPSEVPSEEPKVATAYRPPALRNKPVTNSKLHEEEPPQNMKPHPGSDKPLSKTAL 485

Query: 413 RNKKKREKQKEKK 425
           +N++K E +K  K
Sbjct: 486 KNQRKHEAKKAAK 498

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Mus musculus (taxid: 10090)

>sp|Q54PV7|EIF2A_DICDI Eukaryotic translation initiation factor 2A OS=Dictyostelium discoideum GN=eif2a PE=3 SV=1

 Score =  251 bits (641), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 125/368 (33%), Positives = 212/368 (57%), Gaps = 12/368 (3%)

Query: 24  QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG 83
            E N+I+W  +    +Y+  QK   +  WP I+++ DE +A ++ +NE+ FF+      G
Sbjct: 144 NENNLIVWDIKQASILYKTSQKYCNQENWPLIKWTDDEVLAGKLISNEVHFFNGRSI--G 201

Query: 84  ILYR-LRVPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139
           +L + +++  +++FE + A       +A FVPE   +P S +IY+      ++  +   F
Sbjct: 202 VLAKKIKLQDISSFEFAPATNGGPYKIATFVPEKGSTPGSARIYSY--PTVNEYCSHLKF 259

Query: 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 199
           F+ S  ++ WN+    +L    +D DK+ +SYYGE+ L +L+ DG+   L     +GP+H
Sbjct: 260 FKASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGETGLWFLSQDGSSFNL---NIKGPIH 316

Query: 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNL 259
           DVQWS +  +F V YG MP+  T+FN K  P+++ G  P NT+R++P G+ LCL GFGNL
Sbjct: 317 DVQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFGLNPRNTIRFSPNGQLLCLGGFGNL 376

Query: 260 PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
            GDM FWD    K++  T++ C++ +EWS D  +FMTA  +PR+++DNG+KI  ++ ++ 
Sbjct: 377 QGDMDFWDLTRYKRICGTQSHCAIYTEWSADSVHFMTAVLSPRIRVDNGVKIIKYDNTIV 436

Query: 320 FKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS-RKAAPSNPTAT 378
           +++   +L+QA W+P++P  F +   +  S+   K +  + Q     S R    + P  T
Sbjct: 437 YQENIPELYQASWRPLNPLVFPNERIVYPSIQQQKESSPQPQKYTPPSLRNMQAAPPVVT 496

Query: 379 KPAAYRPP 386
            P A   P
Sbjct: 497 SPPAMGAP 504

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZKC1|EIF2A_CHICK Eukaryotic translation initiation factor 2A OS=Gallus gallus GN=EIF2A PE=2 SV=1

 Score =  249 bits (636), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 224/431 (51%), Gaps = 50/431 (11%)

Query: 13  IIQTFQ-----KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM 67
           I+ T+Q     K  T    N+ L+  +TG+ +    QK M    W    ++ DE++  R 
Sbjct: 89  ILATWQAYSAAKDGTAGAPNLQLYDVKTGKCLKSFIQKKMQ--NWCPC-WADDESICARN 145

Query: 68  ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYA 124
             NE+ FF+  +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y 
Sbjct: 146 VNNEVHFFENNNF-NTIANKLHLQKVNDFVLS--PGAQPTKVAVYVPGSKGAPSFVRLYQ 202

Query: 125 CGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 183
                  Q  LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+
Sbjct: 203 YPNFGGPQSALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATN 262

Query: 184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVR 243
           G    +V L K GP++DV W+ +  EF  VYGFMPA AT+FN KC P+ + G+GP N   
Sbjct: 263 G-ESAIVQLPKNGPIYDVVWNPNSVEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAY 321

Query: 244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL 303
           ++P G  L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL
Sbjct: 322 YSPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHIVTATCAPRL 381

Query: 304 QIDNGIKIFHHNGSLFFKKMF---DKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKS 360
           ++ NG KI+H+ GS+         ++++Q  W+P     F D        G   V   K 
Sbjct: 382 RVSNGYKIWHYTGSVLHNYEVPSNEEMWQVSWQP-----FLD--------GVFPVKAVKY 428

Query: 361 QGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESPTPEM-----------S 408
           Q   S    A P      KPA AYRPP  +      ++L  + P   M           S
Sbjct: 429 QAVPSELPSAEP------KPAQAYRPPALRNKPVTSSKLHEDEPPQNMKPQSGSSEKPLS 482

Query: 409 KNALRNKKKRE 419
           K AL+N+KK E
Sbjct: 483 KTALKNQKKHE 493

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Gallus gallus (taxid: 9031)

>sp|Q7ZY11|EIF2A_XENLA Eukaryotic translation initiation factor 2A OS=Xenopus laevis GN=eif2a PE=2 SV=2

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/430 (36%), Positives = 225/430 (52%), Gaps = 56/430 (13%)

Query: 13  IIQTFQ-----KSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVAC 65
           I+ T+Q     K  T    N+ L+  ++G+   V    QK M    W S  +S DE +  
Sbjct: 89  ILATWQTYTTGKDGTAGTPNLQLYDLKSGKISNVKSFIQKKME--NW-SPHWSDDENICA 145

Query: 66  RMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQI 122
           R   NE+ FF+  +F   I  +L +  V+ FE+S  PG     VAV+VP SKG+P+ V++
Sbjct: 146 RNVNNEVHFFENNNF-DTIANKLHLQKVSDFELS--PGEQPCKVAVYVPGSKGAPSFVRL 202

Query: 123 YACGK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181
           Y        +  LA +SFF+   V + WN  +T +L  A +DVDKT  SYYGE  L+Y+ 
Sbjct: 203 YQYPNFSGPNSALANKSFFKADRVAMLWNSKATAVLVTASTDVDKTGASYYGEQTLHYIA 262

Query: 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT 241
            +G    +V L K GP++DV W+ + +EF VVYGFMPA AT+FN KC PI + G+GP N 
Sbjct: 263 VNG-ESAVVQLPKNGPIYDVTWNKNATEFCVVYGFMPAKATVFNLKCDPIFDFGTGPRNA 321

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301
             ++P+G  L LAGFGNL G M  WD    K +    A  +    W P+G + +TAT +P
Sbjct: 322 AFYSPQGHILVLAGFGNLRGQMEVWDVKKYKLISKPTASDATFFSWCPNGEHIITATCSP 381

Query: 302 RLQIDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSV-GSLKV 355
           RL++ NG KI+H+ G+L  K  +D     +L+Q  W+P     F   + + ++V G L  
Sbjct: 382 RLRVGNGYKIWHYTGTLLHK--YDVPANSELWQVSWQPFPDGVFPAKAIVYQAVPGDLPT 439

Query: 356 AETKSQGSGSASRKAAPSNPTATKPA-AYRPPHAKQAAAIQAELLGESP----TPE---- 406
            E                    +KPA AYRPP  +       +L  + P     P+    
Sbjct: 440 QE--------------------SKPAEAYRPPALRNKPVSSYKLHEDEPPQSMMPQSTEK 479

Query: 407 -MSKNALRNK 415
            MSK AL+N+
Sbjct: 480 PMSKTALKNQ 489

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Xenopus laevis (taxid: 8355)

>sp|Q9VNX8|EIF2A_DROME Eukaryotic translation initiation factor 2A OS=Drosophila melanogaster GN=CG7414 PE=1 SV=1

 Score =  229 bits (584), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/389 (35%), Positives = 214/389 (55%), Gaps = 40/389 (10%)

Query: 27  NVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDTTD-FPKGI 84
           N+++++  TG  V+ + QKN  +  W PS  +S+DE++   +   E  F+D  +   KG 
Sbjct: 120 NLLVYEVATGVEVFAIVQKN--QADWQPS--WSADESIFALVVGGEALFYDLGEGAEKGF 175

Query: 85  LYRLR-VPGVAAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
               R + G     +S  PG+    +A + P +KG+P+  ++Y      Q+Q +A +SFF
Sbjct: 176 ATTSRKIGGSRGGMLSLGPGNCPPFLAFYTPGAKGAPSMCKLYKYPALGQNQTVACKSFF 235

Query: 141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
           +   V++ WN+  +GLL +  ++VDK+  SYYG   ++++ T G     VPL KEGPVH 
Sbjct: 236 QADRVEMLWNKRGSGLLLLTSTEVDKSGASYYGNQAVHFMATKGD-TCSVPLSKEGPVHC 294

Query: 201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
           V+WS   +EF VVYGFMP+ A ++N KC  + + G GP N   +NP G  + LAGFGNLP
Sbjct: 295 VKWSPKATEFVVVYGFMPSKAALYNLKCDVVFDFGEGPRNCAYFNPFGNLIALAGFGNLP 354

Query: 261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
           G +  WD    ++L   +   +   EW P+G +F+TATTAPRL+I NG K++H++G+L  
Sbjct: 355 GAVEVWDVSKREKLANLKCADTTVFEWHPNGEWFVTATTAPRLRISNGFKVYHYSGALLH 414

Query: 321 KKMF---DKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTA 377
           + M+    +L   EW+     +F D     K+    K+ + K +G  S       S P A
Sbjct: 415 ETMWPQGQELLGIEWQ-----QFAD-----KTFSEPKITKAKHEGIKS-------SQPEA 457

Query: 378 TKPAAYRPPHAKQAAAIQAELLGESPTPE 406
           +K  AY PPH +        LL E   PE
Sbjct: 458 SK-KAYTPPHLR--------LLKEGKNPE 477

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q19052|EIF2A_CAEEL Eukaryotic translation initiation factor 2A OS=Caenorhabditis elegans GN=E04D5.1 PE=3 SV=2

 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 121/348 (34%), Positives = 188/348 (54%), Gaps = 26/348 (7%)

Query: 56  RFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESK 114
           +FS DE++A RM  +E+ F+    F +   ++L   G   F +S  P  +HVAV+VP   
Sbjct: 139 QFSDDESLAARMVGSEVFFYTNMSFDR-YDHKLVEKGATNFALSPGPAPNHVAVYVPAVG 197

Query: 115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE 174
            +PA V+++   +      +  R+FF+     + WN+    LL +A  +VDKTNQSYYGE
Sbjct: 198 STPARVRVHRVSESFPV--VGNRTFFKSDKAVMTWNQRGQSLLILASVEVDKTNQSYYGE 255

Query: 175 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL 234
             L  +        +VPL K+GP++  +W+ +G EFAV YG+MPA  T +N +  PI + 
Sbjct: 256 QSLYLINIQSGESVVVPLEKKGPIYAAKWNPNGREFAVCYGYMPAKVTFYNPRGVPIFDT 315

Query: 235 GSGPYNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 293
             GP N V +N  G  + + GFGN+  G M FWD    K++ +     +   +W+PDG++
Sbjct: 316 IEGPRNDVFYNAFGNIVLICGFGNIAKGKMEFWDVETKKEIISIEVPNTTLFDWAPDGQH 375

Query: 294 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD---KLFQAEWKPVSP-DKFGDISELIKS 349
           F+T TTAPRL+IDN  + +H+ G +  +  F+   +L++  W+P++  +KF  I EL K 
Sbjct: 376 FVTCTTAPRLRIDNSYRFWHYTGRMLAETHFESPKELWEVRWRPMTGYNKFA-IKELTK- 433

Query: 350 VGSLKVAETKSQGSGSASRKAAPSNPTATKPA-------AYRPPHAKQ 390
                   T    +G   RK   S+P    PA       AY PPH ++
Sbjct: 434 --------TDKMAAGLPIRKKDASHPLNNVPAGAVRQAGAYIPPHLRK 473

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|P53235|EIF2A_YEAST Eukaryotic translation initiation factor 2A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGR054W PE=1 SV=1

 Score =  181 bits (460), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 222/484 (45%), Gaps = 66/484 (13%)

Query: 11  GLIIQTFQKSST--PQEKNVILW-------KTETGEAVYQLFQKNMTKTTWPSIRFSSDE 61
           G  + T++++S   P  KNV +W       K    E +   ++      +   ++FS  +
Sbjct: 83  GNYLSTWERASIQDPNHKNVKVWYLNKPFKKDCVSEDIVPAYEYQAKSQSGWFLQFSKLD 142

Query: 62  AVACRMATNEIQFF-------DTTDF--PKGILYRLRVP-GVAAFEVSKAPGSHVAVFVP 111
               R+  ++++         D  DF  P  +L           + +S A    +  F P
Sbjct: 143 NYGLRLFKHDLKIVKLSSANADNFDFQSPFAVLSDDETSQHFTTYLISPAEHPTICTFTP 202

Query: 112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY 171
           E  G PA + I+A  +   ++ +A ++FF+  + QL WN     +L +A +D D +N+SY
Sbjct: 203 EKGGKPAQLIIWALSEGKITKKIASKTFFKADSCQLKWNPLGNAILCLAITDFDSSNKSY 262

Query: 172 YGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 225
           YGE+ L  L+  G +  L      V L   GPVHD  WS +  +F V+ G+MPA+ + F+
Sbjct: 263 YGENTLYLLSFQGVNGTLGGNSVRVSLTT-GPVHDFTWSPTSRQFGVIAGYMPATISFFD 321

Query: 226 KKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT 284
            +   +  L     NT+ ++P G ++ +AGFGNL G +   D +D  K +    A  +  
Sbjct: 322 LRGNVVHSLPQQAKNTMLFSPSGHYILIAGFGNLQGSVEILDRLDKFKCVSKFDATNTSV 381

Query: 285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK----------- 333
            +WSP G + MTATT+PRL++DNG+KI+H +GSL F K F +L + +W+           
Sbjct: 382 CKWSPGGEFIMTATTSPRLRVDNGVKIWHVSGSLVFVKEFKELLKVDWRSPCNYKTLENK 441

Query: 334 --------------PVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATK 379
                         P+       +   I +   L++  +  +       + A SN   +K
Sbjct: 442 DEAFFENHIINNWEPLPDSTTSSLDPKISNKSELQIHSSVQEYISQHPSREASSNGNGSK 501

Query: 380 P---AAYRPPHAKQAAAIQAELLGESP----------TPEMSKNALRNKKKREKQKEKKA 426
                AY+PPHA++    +  + G  P           P MS N   N K R ++  KK+
Sbjct: 502 AKAGGAYKPPHARRTGGGRI-VPGVPPGAAKKTIPGLVPGMSANKDANTKNRRRRANKKS 560

Query: 427 AEAA 430
           +E +
Sbjct: 561 SETS 564

Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl-tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40 S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40 S subunits in a GTP-dependent manner. May act by impiging the expression of specific proteins. Specifically associates with both 40S subunits and 80 S ribosomes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
255579468	584	Eukaryotic translation initiation factor	0.928	0.690	0.813	0.0
449484716	519	PREDICTED: LOW QUALITY PROTEIN: eukaryot	0.990	0.828	0.770	0.0
225434102	518	PREDICTED: eukaryotic translation initia	0.917	0.768	0.781	0.0
224121796	474	predicted protein [Populus trichocarpa]	0.857	0.784	0.824	0.0
388512815	516	unknown [Medicago truncatula]	0.972	0.817	0.748	0.0
357475551	516	Eukaryotic translation initiation factor	0.972	0.817	0.751	0.0
356521469	517	PREDICTED: eukaryotic translation initia	0.972	0.816	0.747	0.0
356500094	518	PREDICTED: eukaryotic translation initia	0.972	0.814	0.749	0.0
18410291	513	eukaryotic translation initiation factor	0.926	0.783	0.738	0.0
297839187	511	hypothetical protein ARALYDRAFT_476449 [	0.926	0.786	0.741	0.0

>gi|255579468|ref|XP_002530577.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis] gi|223529876|gb|EEF31807.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/403 (81%), Positives = 361/403 (89%)

Query: 10  VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT 69
            G  +QTFQK S PQ+KNV+LWKTE G+A+Y   QKNMTK TWPSIRFS DEAV+CR+AT
Sbjct: 161 CGTYLQTFQKPSAPQDKNVVLWKTENGDAIYHQSQKNMTKMTWPSIRFSYDEAVSCRLAT 220

Query: 70  NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL 129
           NEIQFFD  DF KGI++RLR+PG+AA E+S  PGSHVA FVPESKGSPASVQI+AC KD+
Sbjct: 221 NEIQFFDPKDFSKGIVHRLRIPGLAALELSMVPGSHVAAFVPESKGSPASVQIFACTKDM 280

Query: 130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 189
           QSQP+ARRSFFRCSTVQLNWNRGSTGLL V QSD DKTNQSYYGESKLNYLTTDGTHEGL
Sbjct: 281 QSQPVARRSFFRCSTVQLNWNRGSTGLLVVVQSDFDKTNQSYYGESKLNYLTTDGTHEGL 340

Query: 190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGK 249
           VPLRKEGP+HDVQWSYSGS+FAVVYGFMPASAT+F+KKC P+LELG+GPYNTVRWNPKGK
Sbjct: 341 VPLRKEGPIHDVQWSYSGSQFAVVYGFMPASATLFDKKCNPLLELGTGPYNTVRWNPKGK 400

Query: 250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGI 309
           FLCLAGFGNLPGDMAFWDYV+ KQLGTTRAECSVTSEWSPDG YFMTATTAPRLQ+DNGI
Sbjct: 401 FLCLAGFGNLPGDMAFWDYVNKKQLGTTRAECSVTSEWSPDGCYFMTATTAPRLQVDNGI 460

Query: 310 KIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRK 369
           KIFH+NGSL+FKKMF KL+QAEWKP SPDKF +I+EL KSV SLK+ ETK QG G+ SRK
Sbjct: 461 KIFHYNGSLYFKKMFGKLYQAEWKPESPDKFDEIAELAKSVDSLKIEETKLQGQGATSRK 520

Query: 370 AAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
            AP+NP A KPAAYRPPHAK AAA+QAEL G S T +MSKNAL
Sbjct: 521 TAPTNPPAQKPAAYRPPHAKSAAAVQAELFGGSSTEQMSKNAL 563

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484716|ref|XP_004156960.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2A-like [Cucumis sativus]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/435 (77%), Positives = 374/435 (85%), Gaps = 5/435 (1%)

Query: 2   LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE 61
           LL       G  +QTFQKSSTPQEKNV+LWK +TG  VY  FQKNMTK +WP+IRFSSDE
Sbjct: 82  LLAAALSPCGTYLQTFQKSSTPQEKNVVLWKVDTGGLVYSQFQKNMTKVSWPAIRFSSDE 141

Query: 62  AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ 121
            VACRMATNEIQFFD  DF KG+++RLRVPGV A E+S+ PG+H+A FVPESKG PASVQ
Sbjct: 142 TVACRMATNEIQFFDAKDFSKGVIHRLRVPGVTAIELSRTPGTHIAAFVPESKGVPASVQ 201

Query: 122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT 181
           I+ACG D Q+QP+ARR FFRCSTVQLNWN GSTGLL V Q+DVDKTNQSYYGE+KLNYLT
Sbjct: 202 IFACG-DSQTQPIARRXFFRCSTVQLNWNNGSTGLLIVVQADVDKTNQSYYGETKLNYLT 260

Query: 182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT 241
           TDG HEGLVPLRKEGPVHDVQWS SGSEFAVVYGFMPA AT+F+KKC+P+LELG GPYNT
Sbjct: 261 TDGVHEGLVPLRKEGPVHDVQWSQSGSEFAVVYGFMPARATVFDKKCKPLLELGEGPYNT 320

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP 301
           VRWNPKGKFLCLAGFGNLPGDMAFWDY + KQLG T+AECSVTSEWSPDG++FMTATTAP
Sbjct: 321 VRWNPKGKFLCLAGFGNLPGDMAFWDYKEXKQLGRTKAECSVTSEWSPDGQFFMTATTAP 380

Query: 302 RLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQ 361
           RLQ+DNGIKIFH+NG+L+FKKMFDKLFQA+WKP S DKFG+I  L+KSV SL V + K+Q
Sbjct: 381 RLQVDNGIKIFHYNGALYFKKMFDKLFQADWKPESSDKFGEIDLLVKSVESLNVDQKKTQ 440

Query: 362 GSGS----ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKK 417
           G GS     S+K APSNP   KPAAYRPPHAK AAAIQAELLGE P   +SKNA+RNKKK
Sbjct: 441 GQGSKVSQTSQKTAPSNPPVQKPAAYRPPHAKNAAAIQAELLGEGPKETLSKNAMRNKKK 500

Query: 418 REKQKEKKAAEAAAA 432
           REKQKEKKA EAA++
Sbjct: 501 REKQKEKKAGEAASS 515

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434102|ref|XP_002276161.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 1 [Vitis vinifera] gi|359478324|ref|XP_003632107.1| PREDICTED: eukaryotic translation initiation factor 2A isoform 2 [Vitis vinifera] gi|296084282|emb|CBI24670.3| unnamed protein product [Vitis vinifera]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/402 (78%), Positives = 353/402 (87%), Gaps = 4/402 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQ+ STPQEKNVILWKTETG  VYQ FQKNMTKTTWPS++FSSDEA+ACR+ATN
Sbjct: 88  GTYLQTFQRPSTPQEKNVILWKTETGAPVYQHFQKNMTKTTWPSVQFSSDEAIACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF K I+YR+R+PG+AA E+SKAPGSHVA F+PESKG PASVQI+ACG++  
Sbjct: 148 EIQFFDARDFSKEIIYRVRIPGIAAVELSKAPGSHVAAFIPESKGIPASVQIFACGENSM 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCSTVQL+WNRGSTGLL + Q+DVDKTNQSY+GESKLNYLTT+GTHEGLV
Sbjct: 208 SQPVARRSFFRCSTVQLSWNRGSTGLLVLVQADVDKTNQSYFGESKLNYLTTNGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PL KEGPVHDVQWSYSGSEFAVVYGFMPA AT+F+KKC P++ELG+GPYNT+RWNPKGKF
Sbjct: 268 PLSKEGPVHDVQWSYSGSEFAVVYGFMPAKATVFDKKCNPLVELGTGPYNTIRWNPKGKF 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDMAFWDY + KQLGTTRAE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 328 LCLAGFGNLPGDMAFWDYKEKKQLGTTRAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGS----A 366
           IFH NGSL+FK MFDKL+QA+WKP SPD+FG+I+EL +S+ SLKV ETK QG GS    A
Sbjct: 388 IFHPNGSLYFKTMFDKLYQADWKPESPDRFGEIAELAQSIDSLKVGETKQQGQGSKSSVA 447

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMS 408
             KA  +NP   KPAAYRPPHAK AAAIQ +L G S T EMS
Sbjct: 448 PNKATSANPPTQKPAAYRPPHAKTAAAIQTKLFGGSSTEEMS 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121796|ref|XP_002330655.1| predicted protein [Populus trichocarpa] gi|222872259|gb|EEF09390.1| predicted protein [Populus trichocarpa]

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/376 (82%), Positives = 344/376 (91%), Gaps = 4/376 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQKSSTPQ KN++LWK E+G++VYQ FQKNMTKTTWPSIR SSDEA+ACRMATN
Sbjct: 91  GTYLQTFQKSSTPQNKNLVLWKIESGDSVYQQFQKNMTKTTWPSIRLSSDEAIACRMATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF KGI++R+RVPGVAA E+S  PGSHVA F+PESKG PASVQI+ACGK++Q
Sbjct: 151 EIQFFDPKDFSKGIVHRIRVPGVAAVELSMVPGSHVAAFIPESKGVPASVQIFACGKEMQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRC TVQL WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT+G+HEGLV
Sbjct: 211 SQPVARRSFFRCDTVQLKWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTNGSHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HDVQWS SGSEFAVVYGFMPASAT+F+KKC P+LELG+GPYNTVRWNPKGKF
Sbjct: 271 PLRKEGPIHDVQWSCSGSEFAVVYGFMPASATLFDKKCHPLLELGTGPYNTVRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDMAFWDYVD KQ+GTT+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMAFWDYVDKKQIGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IFHHNGSL+FKKMFDKL++ EWKP SPD+FG+I+ELIKSV SLKV ETKSQG G+AS+K 
Sbjct: 391 IFHHNGSLYFKKMFDKLYEVEWKPESPDRFGEIAELIKSVDSLKVTETKSQGQGAASKKT 450

Query: 371 APSNPTATKPAAYRPP 386
           AP    A KPAAYRPP
Sbjct: 451 AP----AQKPAAYRPP 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512815|gb|AFK44469.1| unknown [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/426 (74%), Positives = 363/426 (85%), Gaps = 4/426 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQ+KNV LWK ETG+++YQ  QKNMT+  WP+I+FSSDEA ACR+ TN
Sbjct: 91  GTYLQTFQKPSGPQDKNVTLWKIETGDSIYQHSQKNMTRANWPAIQFSSDEATACRVPTN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVA+ E+S +P SHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVASAELSISPASHVAAFVPESKGVPASVQIFACGDASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           +QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 TQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGESKLYYLTTDGVHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG----SA 366
           IFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K+ + K  G G      
Sbjct: 391 IFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQV 450

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKA 426
           S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKNALRNKKKR KQKEKKA
Sbjct: 451 STKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKNALRNKKKRGKQKEKKA 510

Query: 427 AEAAAA 432
           A  A++
Sbjct: 511 AADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475551|ref|XP_003608061.1| Eukaryotic translation initiation factor 2A [Medicago truncatula] gi|355509116|gb|AES90258.1| Eukaryotic translation initiation factor 2A [Medicago truncatula]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/426 (75%), Positives = 364/426 (85%), Gaps = 4/426 (0%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQ+KNV LWK ETG+++YQ  QKNMT+  WP+I+FSSDEA ACR+ TN
Sbjct: 91  GTYLQTFQKPSGPQDKNVTLWKIETGDSIYQHSQKNMTRANWPAIQFSSDEATACRVPTN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVA+ E+S +P SHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVASAELSISPASHVAAFVPESKGVPASVQIFACGDASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           +QP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 TQPMARRSFFRCSTTQLKWNHGSTGLLIVVQSDVDKTNQSYYGESKLYYLTTDGVHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGP+HD QWS SGSEFAVVYGFMPA AT+F+KKCRP+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKEGPIHDAQWSNSGSEFAVVYGFMPAKATLFDKKCRPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDYV+ KQL +T+AE SV+SEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYVERKQLASTKAEWSVSSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG----SA 366
           IFH+NGSL+FK+MFDKL+QA+WKP SP KFGDI+ELIKS+ S+K+ + K  G G      
Sbjct: 391 IFHYNGSLYFKQMFDKLYQADWKPESPSKFGDITELIKSLDSIKLEDKKPSGQGPKPTQV 450

Query: 367 SRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKA 426
           S KA+ +NPTA KPAAYRPPHAK AAAIQAELLGES    +SKNALRNKKKREKQKEKKA
Sbjct: 451 STKASSANPTAQKPAAYRPPHAKTAAAIQAELLGESSAESLSKNALRNKKKREKQKEKKA 510

Query: 427 AEAAAA 432
           A  A++
Sbjct: 511 AADASS 516

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521469|ref|XP_003529378.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/427 (74%), Positives = 359/427 (84%), Gaps = 5/427 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQEKNV LW  ETG AVYQ  QKNMTK  WP+I+FSSDEA  CR+ATN
Sbjct: 91  GTYLQTFQKPSGPQEKNVTLWSIETGAAVYQQSQKNMTKANWPAIQFSSDEATVCRLATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRV GVAA E+S  PGSHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVQGVAAAELSSLPGSHVAAFVPESKGIPASVQIFACGNASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 SQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG-----S 365
           IFH+NGSL+FKKMFDKL+QA+WKP SP KFGDI+ELIKS+  +++ + K  G G      
Sbjct: 391 IFHYNGSLYFKKMFDKLYQADWKPESPSKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQ 450

Query: 366 ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKK 425
            S KA+ +NP   KPAAYRPPHAK A+AIQAEL GE+P   +SKNALRNKKKREKQKEKK
Sbjct: 451 TSTKASSTNPPTQKPAAYRPPHAKNASAIQAELFGETPAEPLSKNALRNKKKREKQKEKK 510

Query: 426 AAEAAAA 432
           A++A+++
Sbjct: 511 ASDASSS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500094|ref|XP_003518869.1| PREDICTED: eukaryotic translation initiation factor 2A-like [Glycine max]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/427 (74%), Positives = 358/427 (83%), Gaps = 5/427 (1%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK S PQEKNV LW  ETG AV+Q  QKNMTK  WP+I+FSSDEA ACR+ATN
Sbjct: 91  GTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATN 150

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFDT DF KG++ RLRVPGVAA E+S  PGSHVA FVPESKG PASVQI+ACG   Q
Sbjct: 151 EVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQ 210

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP+ARRSFFRCST QL WN GSTGLL V QSDVDKTNQSYYGESKL YLTTDG HEGLV
Sbjct: 211 SQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLV 270

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRK+GP+HD QWSYSG EFAVVYGFMPA AT+F+KKC P+LELG+GPYNT+RWNPKGKF
Sbjct: 271 PLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKF 330

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LCLAGFGNLPGDM FWDY+D KQLG T+AE SVTSEWSPDG YFMTATTAPRLQ+DNGIK
Sbjct: 331 LCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIK 390

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG-----S 365
           IFH+NGSL+FKKMFDKL+Q +WKP SP KFGDI+ELIKS+  +++ + K  G G      
Sbjct: 391 IFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQ 450

Query: 366 ASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKK 425
            S KA+ +NPT  KPAAYRPPHAK A+AIQAEL GE+    +SKNALRNKKKREKQKEKK
Sbjct: 451 TSTKASSANPTTQKPAAYRPPHAKNASAIQAELFGETTAETLSKNALRNKKKREKQKEKK 510

Query: 426 AAEAAAA 432
           AA  A++
Sbjct: 511 AASDASS 517

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410291|ref|NP_565058.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana] gi|12324325|gb|AAG52134.1|AC010556_16 unknown protein; 49372-46275 [Arabidopsis thaliana] gi|15810527|gb|AAL07151.1| unknown protein [Arabidopsis thaliana] gi|20259061|gb|AAM14246.1| unknown protein [Arabidopsis thaliana] gi|332197304|gb|AEE35425.1| eukaryotic translation initiation factor eIF2A-like protein [Arabidopsis thaliana]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/402 (73%), Positives = 346/402 (86%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK +TPQEKNV +W TETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct: 88  GTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           E+QFFD  DF KGI  R+RVPG+AAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct: 148 EVQFFDPKDFSKGITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct: 208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++ELG GPYNT+RWNPKG+ 
Sbjct: 268 PLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRV 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct: 328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK+ E KSQG GSA +K 
Sbjct: 388 IFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKT 447

Query: 371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
              NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL
Sbjct: 448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNAL 489

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839187|ref|XP_002887475.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata] gi|297333316|gb|EFH63734.1| hypothetical protein ARALYDRAFT_476449 [Arabidopsis lyrata subsp. lyrata]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/402 (74%), Positives = 344/402 (85%)

Query: 11  GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
           G  +QTFQK +TPQEKNV +W  ETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct: 88  GTYLQTFQKPTTPQEKNVSIWNIETGDLAHSHYQKSITKASWPSIRFCLDESSACRLATN 147

Query: 71  EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
           EIQFFD  DF KGI  R+RVPGVAAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct: 148 EIQFFDPKDFSKGITSRIRVPGVAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query: 131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
           SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct: 208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query: 191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
           PL KEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++E+G GPYNT+RWNPKG+ 
Sbjct: 268 PLGKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMEIGEGPYNTLRWNPKGRV 327

Query: 251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
           LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct: 328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query: 311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
           IF+++G  +FKKMF++L+QAEWKP SPD+FGDISELIKSV SLK+ E KSQG GSA +KA
Sbjct: 388 IFNYDGKRYFKKMFERLYQAEWKPESPDRFGDISELIKSVESLKLGEGKSQGQGSAQKKA 447

Query: 371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNAL 412
              NP A KPAAYRPPHAK AAA+QAELLG S   EMSKNAL
Sbjct: 448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGVSTAGEMSKNAL 489

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	434
TAIR|locus:2197284	513	AT1G73180 "AT1G73180" [Arabido	0.930	0.787	0.737	5.8e-169
POMBASE|SPBC4B4.04	576	SPBC4B4.04 "translation initia	0.824	0.621	0.390	9.2e-68
ASPGD|ASPL0000035752	677	AN2775 [Emericella nidulans (t	0.794	0.509	0.394	7.7e-66
DICTYBASE|DDB_G0284267	608	eIF2a "eukaryotic translation	0.817	0.583	0.343	1.8e-64
UNIPROTKB|G4NE13	705	MGG_00847 "Eukaryotic translat	0.806	0.496	0.372	3.7e-64
ZFIN|ZDB-GENE-050626-52	580	eif2a "eukaryotic translation	0.880	0.658	0.375	2e-63
UNIPROTKB|F1PGT8	585	EIF2A "Uncharacterized protein	0.864	0.641	0.383	3e-62
RGD|1589591	486	Eif2a "eukaryotic translation	0.705	0.629	0.417	4.8e-62
UNIPROTKB|F1MBF0	585	EIF2A "Uncharacterized protein	0.880	0.652	0.375	7.9e-62
UNIPROTKB|F1SJN5	492	EIF2A "Uncharacterized protein	0.887	0.782	0.372	7.9e-62

TAIR|locus:2197284 AT1G73180 "AT1G73180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1643 (583.4 bits), Expect = 5.8e-169, P = 5.8e-169
 Identities = 298/404 (73%), Positives = 348/404 (86%)

Query:    11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN 70
             G  +QTFQK +TPQEKNV +W TETG+  +  +QK++TK +WPSIRF  DE+ ACR+ATN
Sbjct:    88 GTYLQTFQKPTTPQEKNVSIWNTETGDLAHSHYQKSITKASWPSIRFCPDESSACRLATN 147

Query:    71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ 130
             E+QFFD  DF KGI  R+RVPG+AAFE+SK P SHVAVFVPESKGSP SVQI+ CG++LQ
Sbjct:   148 EVQFFDPKDFSKGITSRIRVPGIAAFELSKTPASHVAVFVPESKGSPGSVQIFGCGEELQ 207

Query:   131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 190
             SQP ARRSFFRCS+VQ +WN GSTGLL V QSDVDKTNQSYYGE+KL+YLT DGTHEGLV
Sbjct:   208 SQPSARRSFFRCSSVQFSWNHGSTGLLVVVQSDVDKTNQSYYGETKLHYLTIDGTHEGLV 267

Query:   191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKF 250
             PLRKEGPVHDVQWS+SGSEFAVVYGFMPA  TIF+K C+P++ELG GPYNT+RWNPKG+ 
Sbjct:   268 PLRKEGPVHDVQWSFSGSEFAVVYGFMPACVTIFDKNCKPLMELGEGPYNTLRWNPKGRV 327

Query:   251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIK 310
             LC+AGFGNLPGDMAFWD V+ KQLG+ +AE SVTSEWSPDGRYF+TA+TAPR QIDNG+K
Sbjct:   328 LCVAGFGNLPGDMAFWDVVNKKQLGSNKAEWSVTSEWSPDGRYFLTASTAPRRQIDNGMK 387

Query:   311 IFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKA 370
             IF+++G  ++KKMF++L+QAEWKP SP++FGDISELIKSV SLK+ E KSQG GSA +K 
Sbjct:   388 IFNYDGKRYYKKMFERLYQAEWKPESPERFGDISELIKSVESLKLGEGKSQGQGSAQKKT 447

Query:   371 APSNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNALRN 414
                NP A KPAAYRPPHAK AAA+QAELLG S T EMSKNAL+N
Sbjct:   448 IAPNPIAQKPAAYRPPHAKHAAAVQAELLGISTTGEMSKNALKN 491

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

POMBASE|SPBC4B4.04 SPBC4B4.04 "translation initiation factor eIF2A (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 146/374 (39%), Positives = 229/374 (61%)

Query:    18 QKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT 77
             +   TP++ N+ +W TETG+ V+   Q+N  +T W +++++ DE++A R+ TNE+ F++T
Sbjct:    97 EADGTPKQ-NMKVWNTETGQLVFSFVQRN--QTGW-NLQYTCDESLAARLVTNEVHFYET 152

Query:    78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR 137
              +  KG + +LRV G++ F +S      VAVF+PE KG+PASV+ Y+   +  S PL+++
Sbjct:   153 GNMSKGPIAKLRVEGISDFALSPGQNHAVAVFIPEKKGAPASVRTYSI-PNFNS-PLSQK 210

Query:   138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 197
             +FF+   VQ  WN   T LL + Q++VDK+N++YYGE+ L  L   G  +  V L +EGP
Sbjct:   211 TFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNYYGETNLYLLGITGQFDCRVDLDREGP 270

Query:   198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFG 257
             +HDV W+    EF +VYG+MPA   IF+ +   +  +   P NT+ ++P  +++ LAGFG
Sbjct:   271 IHDVCWNADSKEFGIVYGYMPAKTAIFDNRANVVSIIPPAPRNTLIFSPNSRYILLAGFG 330

Query:   258 NLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316
             NL G +  +D  +  K++ T  A      E+SPD ++ +TA T+PRL++DN IKI+H  G
Sbjct:   331 NLQGSIDIFDAANNMKKITTVEAANCTYCEFSPDSQFLLTAVTSPRLRVDNSIKIWHITG 390

Query:   317 SLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPT 376
             +  F + F++L+QA W+P  P     +   + S  SL    T      SAS+ AA   P+
Sbjct:   391 APMFYEEFNELYQAFWRP-RPLNPTLLQNALTSA-SLPSPPTPH---ASASKLAA--KPS 443

Query:   377 ATKPA-AYRPPHAK 389
               KPA AYRPP A+
Sbjct:   444 V-KPAGAYRPPGAR 456

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

ASPGD|ASPL0000035752 AN2775 [Emericella nidulans (taxid:162425)]

 Score = 650 (233.9 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 147/373 (39%), Positives = 224/373 (60%)

Query:    26 KNVILWKT---ETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF 80
             KN+ +W+    E+GE   V Q  QK+  +T W +I++S+DE +  R+ TNE+QF+ + D 
Sbjct:   123 KNLKVWQVAELESGENRIVGQYVQKS--QTGW-NIQYSADEKLCARVVTNEVQFYQSDDL 179

Query:    81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
              K +  +LRV GVA F +S      VAVF+PE KG PA+V+++   +     P+++++FF
Sbjct:   180 SK-VWNKLRVEGVADFALSPGQNLSVAVFIPERKGQPAAVKVFLVPQF--GAPVSQKTFF 236

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             +   VQL WN   T L+ +AQ++VDKT +SYYGE+ L  L++ G  +  V L +EGP+HD
Sbjct:   237 KGDKVQLKWNASGTSLIVLAQTEVDKTGKSYYGETTLYLLSSSGQFDSRVHLDREGPIHD 296

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             V WS +  EF VVYG +PA  TIFN +  P       P NT+ ++P G+F+ +AGFGNL 
Sbjct:   297 VSWSPTSKEFGVVYGTIPAKTTIFNVRGVPKHSFPLTPRNTILFSPHGRFVLVAGFGNLA 356

Query:   261 GDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
             G M  +D      ++ T  A  S    WSPDG+  +TATT+PRL++DNGI+++H +G+L 
Sbjct:   357 GQMDIYDMEKNYNKITTVEAANSSVCAWSPDGQTILTATTSPRLRVDNGIRLWHVSGALL 416

Query:   320 FKKMFDKLFQAEWKPVSPDK--FGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTA 377
             + +  ++L+   W+P S  +   GD    + +  +  +A         ++RKA    P  
Sbjct:   417 YNEDINELYDVFWRPQSTIQHPLGDPFNPLPAPHASAIAYL-------STRKA----PV- 464

Query:   378 TKPA-AYRPPHAK 389
              KPA AYRPP A+
Sbjct:   465 -KPAGAYRPPGAR 476

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0284267 eIF2a "eukaryotic translation initiation factor 2A" [Dictyostelium discoideum (taxid:44689)]

 Score = 636 (228.9 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
 Identities = 126/367 (34%), Positives = 214/367 (58%)

Query:    25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGI 84
             E N+I+W  +    +Y+  QK   +  WP I+++ DE +A ++ +NE+ FF+      G+
Sbjct:   145 ENNLIVWDIKQASILYKTSQKYCNQENWPLIKWTDDEVLAGKLISNEVHFFNGRSI--GV 202

Query:    85 LYR-LRVPGVAAFEVSKAP--GSH-VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
             L + +++  +++FE + A   G + +A FVPE   +P S +IY+      ++  +   FF
Sbjct:   203 LAKKIKLQDISSFEFAPATNGGPYKIATFVPEKGSTPGSARIYSY--PTVNEYCSHLKFF 260

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             + S  ++ WN+    +L    +D DK+ +SYYGE+ L +L+ DG+   L     +GP+HD
Sbjct:   261 KASEAKVLWNKKGNAILVHTFTDTDKSGKSYYGETGLWFLSQDGSSFNL---NIKGPIHD 317

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             VQWS +  +F V YG MP+  T+FN K  P+++ G  P NT+R++P G+ LCL GFGNL 
Sbjct:   318 VQWSPTLDQFMVCYGNMPSQTTLFNLKGEPLVDFGLNPRNTIRFSPNGQLLCLGGFGNLQ 377

Query:   261 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 320
             GDM FWD    K++  T++ C++ +EWS D  +FMTA  +PR+++DNG+KI  ++ ++ +
Sbjct:   378 GDMDFWDLTRYKRICGTQSHCAIYTEWSADSVHFMTAVLSPRIRVDNGVKIIKYDNTIVY 437

Query:   321 KKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS-RKAAPSNPTATK 379
             ++   +L+QA W+P++P  F +   +  S+   K +  + Q     S R    + P  T 
Sbjct:   438 QENIPELYQASWRPLNPLVFPNERIVYPSIQQQKESSPQPQKYTPPSLRNMQAAPPVVTS 497

Query:   380 PAAYRPP 386
             P A   P
Sbjct:   498 PPAMGAP 504

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|G4NE13 MGG_00847 "Eukaryotic translation initiation factor 2A" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 138/370 (37%), Positives = 224/370 (60%)

Query:    26 KNVILWKT--ETGEAVY-QLFQKNMTKTT--WPSIRFSSDEAVACRMATNEIQFFDTTDF 80
             KN+ +W+T  +  E    Q   + + K+   W ++++++DE    RM TNE+QF+D+ D 
Sbjct:   104 KNLKVWRTVEDLPEGTEKQPLGRFVQKSQNGW-NLQYTNDEKYCARMVTNEVQFYDSNDL 162

Query:    81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF 140
                +  +LRV GV+ F +S      +AVFVPE KG PA+V+++   +   + P+++++FF
Sbjct:   163 AT-VWNKLRVEGVSDFALSPGKAHALAVFVPERKGQPAAVKVFNVPQF--TAPVSQKTFF 219

Query:   141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD 200
             +   VQL WN   + ++ +AQ+DVDK+N+SYYGE+ L  L+ +G+ +  + L KEGP+HD
Sbjct:   220 KGDKVQLKWNALGSAIIVLAQTDVDKSNKSYYGETTLYLLSVNGSFDARISLDKEGPIHD 279

Query:   201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLP 260
             V WS +  EF V+YGF+PA  TIFN++        SGP NT+ ++P G+F+ +AGFGNL 
Sbjct:   280 VAWSPNSKEFGVIYGFIPAKITIFNQRAVATHSFPSGPRNTIIFSPTGRFVLVAGFGNLA 339

Query:   261 GDMAFWDYV-DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 319
             G +  +D   D +++ T  +      +WSPD RY MTATT+PRL++DNG+K++H  G+L 
Sbjct:   340 GQIDVYDLERDYRKICTIESGSPSVCQWSPDSRYIMTATTSPRLRVDNGVKLWHVTGTLM 399

Query:   320 FKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATK 379
             + +   +L+   W+PV P+      + ++ +     A   S  +  ++ K  PS P    
Sbjct:   400 YNEDMVELYNVLWRPVLPEH-APTGDALQPMP----APHASAATYMSTVKT-PSKPAG-- 451

Query:   380 PAAYRPPHAK 389
               AYRPP A+
Sbjct:   452 --AYRPPGAR 459

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050626-52 eif2a "eukaryotic translation initiation factor 2A" [Danio rerio (taxid:7955)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 155/413 (37%), Positives = 236/413 (57%)

Query:    15 QTFQKSS-TPQ-EKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNE 71
             Q + K+   PQ E N+ LW  +TG  +   +QK MT   W PS  ++ DE+++ R   NE
Sbjct:    93 QQYTKTQDNPQGEANLQLWDLQTGACMKAFYQKKMTG--WCPS--WADDESISVRNVNNE 148

Query:    72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGK- 127
             + FF+  +F + I  +L +  V+ F +S  PGS    VAV+VP SKG+P+ V++Y     
Sbjct:   149 LHFFENNNF-ETIANKLHLQKVSEFALS--PGSQPSKVAVYVPGSKGAPSFVRLYQYPNF 205

Query:   128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE 187
                +  LA +SFF+   V + WN+ +T +L  A ++VDKT  SYYGE  L+Y+ T+G   
Sbjct:   206 GGPTCALANKSFFKADKVNMLWNKKATAVLVTASTEVDKTGASYYGEQTLHYVATNG-ES 264

Query:   188 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPK 247
              +V L K GP++DV WS + +EF VVYGFMPA AT+FN KC  + + G+GP N   ++P+
Sbjct:   265 AVVQLPKNGPIYDVSWSPNSTEFCVVYGFMPAKATVFNNKCESVFDFGTGPRNAAFYSPQ 324

Query:   248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN 307
             G  L LAGFGNL G M  WD    KQ+   +AE +    W PDG + +TAT +PRL+  N
Sbjct:   325 GHILVLAGFGNLRGQMEVWDVKKYKQVSKPQAEDTTHFSWCPDGEHIVTATCSPRLRASN 384

Query:   308 GIKIFHHNGSLFFKKMFD---KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSG 364
             G KI+H+ G++ +K       +L++  W+P     F + +   +++ S ++  T+++ + 
Sbjct:   385 GYKIWHYTGTVLYKHETPSGKELWEVLWQPFPAGVFPERAVKYQALPS-ELGSTEAKPAQ 443

Query:   365 SASRKAAPSNP-TAT-KPAAYRPP-HAKQAAAIQAELLGESPTPEMSKNALRN 414
             +    A  + P TA+ K     PP + K  AA      GE    + SK AL+N
Sbjct:   444 AYRPPALRNKPQTASSKLHEEEPPQNMKPGAA------GEK---QPSKAALKN 487

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1PGT8 EIF2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 153/399 (38%), Positives = 207/399 (51%)

Query:    16 TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
             T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct:    97 TTSKDGTAGIPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSEDETICARNVNNEVHF 152

Query:    75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGK-DLQSQ 132
             F+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y     D    
Sbjct:   153 FENNNF-NTIANKLHLQKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDGPHA 211

Query:   133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192
              LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+  +G    +V L
Sbjct:   212 ALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIAANG-ESAVVQL 270

Query:   193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLC 252
              K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   ++P G  L 
Sbjct:   271 PKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330

Query:   253 LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
             LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG KI+
Sbjct:   331 LAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIW 390

Query:   313 HHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAP 372
             H+ GS+  K  +D    AE   VS   F D        G   V     Q   S      P
Sbjct:   391 HYTGSVLHK--YDMPSNAELWQVSWQPFLD--------GIFPVKTITYQAVPSDVPSEEP 440

Query:   373 SNPTATKPAAYRPPHAKQAAAIQAELLGESPTPEMSKNA 411
                 AT   AYRPP  +      ++L  E P   M   A
Sbjct:   441 K--VAT---AYRPPALRNKPITNSKLHEEEPPQNMKPQA 474

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

RGD|1589591 Eif2a "eukaryotic translation initiation factor 2A" [Rattus norvegicus (taxid:10116)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 136/326 (41%), Positives = 190/326 (58%)

Query:    19 KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQFFDT 77
             K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ FF+ 
Sbjct:     5 KDGTAGTPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSDDEIICARNVNNEVHFFEN 60

Query:    78 TDFPKGILYRLRVPGVAAFEVSKAPGSH---VAVFVPESKGSPASVQIYACGKDLQSQP- 133
              +F   I  +L +  V  F +S  PG+    VAV+VP SKG+P+ V++Y        Q  
Sbjct:    61 NNF-NTIANKLHLQKVNDFNLS--PGTQPFKVAVYVPGSKGAPSFVRLYQYPNFAGPQAA 117

Query:   134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 193
             LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L 
Sbjct:   118 LANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQLP 176

Query:   194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCL 253
             K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  L L
Sbjct:   177 KNGPIYDVAWNPSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAFYSPHGHILVL 236

Query:   254 AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 313
             AGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+++NG KI+H
Sbjct:   237 AGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIWH 296

Query:   314 HNGSLFFKKMFD-----KLFQAEWKP 334
             + GSL +K  +D     +L+Q  W+P
Sbjct:   297 YTGSLLYK--YDVPSNGELWQVSWQP 320

GO:0000049 "tRNA binding" evidence=ISO

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISO

GO:0006412 "translation" evidence=ISO

GO:0006417 "regulation of translation" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0009967 "positive regulation of signal transduction" evidence=ISO

GO:0032933 "SREBP signaling pathway" evidence=ISO

GO:0042255 "ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

UNIPROTKB|F1MBF0 EIF2A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 153/408 (37%), Positives = 216/408 (52%)

Query:    16 TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMATNEIQF 74
             T  K  T    N+ L+  +TG  +    QK M    W PS  +S DE +  R   NE+ F
Sbjct:    97 TASKDDTAGIPNLQLYDVKTGTCLKSFIQKKMQN--WCPS--WSEDETLCARNVNNEVHF 152

Query:    75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYACGK-DLQSQ 132
             F+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y     D    
Sbjct:   153 FENNNF-NTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQYPNFDEPHA 211

Query:   133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 192
              LA +SFF+   V + WN+ +T +L +A +DVDKT  SYYGE  L+Y+ T+G    +V L
Sbjct:   212 ALANKSFFKADKVTMLWNKKATAVLVIASTDVDKTGASYYGEQTLHYIATNG-ESAVVQL 270

Query:   193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLC 252
              K GP++DV W+ S +EF  VYGFMPA AT+FN KC P+ + G+GP N   ++P G  L 
Sbjct:   271 PKNGPIYDVVWNSSSTEFCAVYGFMPAKATVFNLKCDPVFDFGTGPRNAAYYSPHGHILV 330

Query:   253 LAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
             LAGFGNL G M  WD    K +    A  S    W PDG + +TAT APRL+++NG KI+
Sbjct:   331 LAGFGNLRGQMEVWDVKKYKLISKPVASDSTYFAWCPDGEHILTATCAPRLRVNNGYKIW 390

Query:   313 HHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSAS 367
             H+ GS+  K  +D     +L+Q  W+P     F + +   + V S   +E     +  A 
Sbjct:   391 HYTGSVLHK--YDVPSNAELWQVSWQPFLDGIFPEKAITYQVVPSDVPSEEPKVAT--AY 446

Query:   368 RKAAPSNPTATKPAAYRPPHAKQAAAIQAELLG-ESPTPEMSKNALRN 414
             R  A  N    KP      H ++         G E P   +SK AL+N
Sbjct:   447 RPPALRN----KPVTNSKLHEEEPPQNMKPQPGNEKP---LSKTALKN 487

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1SJN5 EIF2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 155/416 (37%), Positives = 224/416 (53%)

Query:    13 IIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACR 66
             I+ T+Q  +T ++      N+ L+  +TG  +    QK M    W PS  +S DE +  R
Sbjct:    58 ILATWQPYTTSKDGAAGIPNLQLYDMKTGTCLKSFIQKKMQN--WCPS--WSEDETLCAR 113

Query:    67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH-VAVFVPESKGSPASVQIYAC 125
                NE+ FF+  +F   I  +L +  +  F +S  P  + VAV+VP SKG+P+ V++Y  
Sbjct:   114 NVNNEVHFFENNNF-NTIANKLHLKKINDFVLSPGPQPYKVAVYVPGSKGAPSFVRLYQY 172

Query:   126 GK-DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG 184
                D     LA +SFF+   V + WN+ +T +L +A ++VDKT  SYYGE  L+Y+ T+G
Sbjct:   173 PNFDGPHAALANKSFFKADKVTMLWNKKATAVLVIASTEVDKTGASYYGEQTLHYIATNG 232

Query:   185 THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRW 244
                 +V L K GP++DV W+ S +EF  VYGFMPA ATIFN KC P+ + G+GP N   +
Sbjct:   233 -ESAVVQLPKNGPIYDVVWNSSSTEFCAVYGFMPAKATIFNLKCDPVFDFGTGPRNAAYY 291

Query:   245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ 304
             +P G  L LAGFGNL G M  WD  + K +    A  S    W PDG + +TAT APRL+
Sbjct:   292 SPHGHILVLAGFGNLRGQMEVWDVKNYKLISKPVASDSTYFAWCPDGEHILTATCAPRLR 351

Query:   305 IDNGIKIFHHNGSLFFKKMFD-----KLFQAEWKPVSPDKFGDISELIKSVGSLKVAETK 359
             ++NG KI+H+ GS+  K  +D     +L+Q  W+P     F + S   ++V S   +E  
Sbjct:   352 VNNGYKIWHYTGSVLHK--YDVPSNAELWQVSWQPFLDGIFPEKSITYQAVPSDVPSEEP 409

Query:   360 SQGSGSASRKAAPSNPTATKPAAYRPPHAKQAAAIQAELLG-ESPTPEMSKNALRN 414
                +  A R  A  N    KP      H ++         G E P   +SK AL+N
Sbjct:   410 KVAT--AYRPPALRN----KPVTNSKLHEEEPPQNMKPQPGNEKP---LSKTALKN 456

GO:0043022 "ribosome binding" evidence=IEA

GO:0042255 "ribosome assembly" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0009967 "positive regulation of signal transduction" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	434
pfam08662	194	pfam08662, eIF2A, Eukaryotic translation initiatio	3e-99
COG5354	561	COG5354, COG5354, Uncharacterized protein, contain	2e-56
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-04

>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A

 Score =  294 bits (755), Expect = 3e-99
 Identities = 97/194 (50%), Positives = 132/194 (68%)

Query: 137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 196
           +SFF+   V++ WN+  T LL +  +DVDKTN+SYYGE  L  +   G  + +V L KEG
Sbjct: 1   KSFFKADKVKMKWNKNGTYLLVLVSTDVDKTNKSYYGEFNLYLIGETGGPDEVVELDKEG 60

Query: 197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGF 256
           P+HD  WS +G EFAV+YG+MPA  T F+ K   I  LG  P NT+ W+P G+ + LAGF
Sbjct: 61  PIHDFAWSPNGKEFAVIYGYMPAKITFFDLKGNVIHSLGEQPRNTIFWSPFGRLVLLAGF 120

Query: 257 GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 316
           GNL G + FWD  + K++ T  A  +   EWSPDGRYF+TATT+PRL++DNG KI+H++G
Sbjct: 121 GNLAGQIEFWDVKNKKKIATAEASNATDCEWSPDGRYFLTATTSPRLRVDNGFKIWHYSG 180

Query: 317 SLFFKKMFDKLFQA 330
            L +K  FD+L+Q 
Sbjct: 181 KLVYKYDFDELYQV 194

This is a family of eukaryotic translation initiation factors. Length = 194

>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

 Score =  194 bits (495), Expect = 2e-56
 Identities = 101/410 (24%), Positives = 160/410 (39%), Gaps = 36/410 (8%)

Query: 27  NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGIL 85
           NV +W   +G  V+     +     WP ++FS D+    R+  + +   + TD   +   
Sbjct: 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPF 168

Query: 86  YRLRVPGVAAFEVSKAPGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST 144
             LR  G+  F +S        A + PE    PA V+I +  K   +  L  ++ F+ S 
Sbjct: 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSG 225

Query: 145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS 204
           VQL W      LL +  +   K+N+SY+GES L  L         V    + PVHD  W 
Sbjct: 226 VQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWE 283

Query: 205 YSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 264
              S FAV+ G+MPAS ++F+ +            NT+ ++P  +++  AGF NL G++ 
Sbjct: 284 PLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE 343

Query: 265 FWDYVDGKQLGTTRAECSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK 322
            +D   G+           TS  +WSPDG+++ T TT+ +L++DN IK++   G+  F  
Sbjct: 344 IFD-PAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-- 400

Query: 323 MFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAA 382
              +L    W P                         +  S     K            A
Sbjct: 401 ---ELTNITWDPSGQY--------------------VTTSSSCPKHKVEHGYKIFKIAGA 437

Query: 383 YRPPHAK-QAAAIQAELLGESPTPEMSKNALRNKKKREKQKEKKAAEAAA 431
             P  A+             S     S        +      +KA    A
Sbjct: 438 LYPEEARGGFKNFAWRPEPPSKLTIESAKKYVKPSRHRFVPFEKAVIMEA 487

Length = 561

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG---PYNTVRWNPKGKFL 251
            G V+ V +S  G +          +  +++      L    G     N+V ++P G  L
Sbjct: 177 TGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 252 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 309
                    G +  WD   G+ + T      SVTS  WSPDG+   + +       D  I
Sbjct: 235 ASGSED---GTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTI 285

Query: 310 KIF 312
           +I+
Sbjct: 286 RIW 288

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 30/201 (14%)

Query: 147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS 206
           L  +      + +A S +D T + +   +    + T   H           V  + +S  
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH--------SESVTSLAFSPD 166

Query: 207 GSEFAVVYGFMPASATI-----FNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPG 261
           G   A          TI        K    L   + P +++ ++P G  L  +G  +  G
Sbjct: 167 GKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD--G 221

Query: 262 DMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF----HHN 315
            +  WD   GK L +T +    SV S +SPDG    + ++      D  I+++      +
Sbjct: 222 TIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS------DGTIRLWDLRSSSS 275

Query: 316 GSLFFKKMFDKLFQAEWKPVS 336
                      +    + P  
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDG 296

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	434
KOG2315	566	consensus Predicted translation initiation factor	100.0
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	100.0
KOG2314	698	consensus Translation initiation factor 3, subunit	100.0
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.93
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0286	343	consensus G-protein beta subunit [General function	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.91
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.9
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.9
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.89
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.88
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.88
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.87
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.87
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.87
KOG2096	420	consensus WD40 repeat protein [General function pr	99.87
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.86
KOG0266	456	consensus WD40 repeat-containing protein [General	99.86
PLN00181	793	protein SPA1-RELATED; Provisional	99.86
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.86
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
PTZ00421	493	coronin; Provisional	99.85
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.85
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.85
KOG0645	312	consensus WD40 repeat protein [General function pr	99.85
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
PTZ00420	568	coronin; Provisional	99.83
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.83
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.83
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.83
KOG0296	399	consensus Angio-associated migratory cell protein	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.82
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.82
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
PRK03629	429	tolB translocation protein TolB; Provisional	99.81
KOG0641	350	consensus WD40 repeat protein [General function pr	99.8
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.79
KOG2055	514	consensus WD40 repeat protein [General function pr	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.78
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.78
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.78
KOG0643	327	consensus Translation initiation factor 3, subunit	99.78
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.77
PTZ00421	493	coronin; Provisional	99.77
KOG1274	933	consensus WD40 repeat protein [General function pr	99.77
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.76
KOG1539	910	consensus WD repeat protein [General function pred	99.76
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.76
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.76
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.76
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.75
KOG0641	350	consensus WD40 repeat protein [General function pr	99.74
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.74
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.74
PRK04922	433	tolB translocation protein TolB; Provisional	99.74
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.74
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.74
KOG0289	506	consensus mRNA splicing factor [General function p	99.73
KOG0639	705	consensus Transducin-like enhancer of split protei	99.73
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.73
KOG2096	420	consensus WD40 repeat protein [General function pr	99.73
PRK01742	429	tolB translocation protein TolB; Provisional	99.73
PTZ00420	568	coronin; Provisional	99.73
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.72
PRK05137	435	tolB translocation protein TolB; Provisional	99.72
KOG0289	506	consensus mRNA splicing factor [General function p	99.72
KOG2315	566	consensus Predicted translation initiation factor	99.71
PRK03629	429	tolB translocation protein TolB; Provisional	99.71
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.71
PRK05137	435	tolB translocation protein TolB; Provisional	99.71
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.71
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.7
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.7
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.69
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.69
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.69
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.69
PRK04922	433	tolB translocation protein TolB; Provisional	99.69
PRK01029	428	tolB translocation protein TolB; Provisional	99.68
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.68
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
KOG4328	498	consensus WD40 protein [Function unknown]	99.68
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.67
PRK02889	427	tolB translocation protein TolB; Provisional	99.67
KOG1539	910	consensus WD repeat protein [General function pred	99.67
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.67
KOG2314	698	consensus Translation initiation factor 3, subunit	99.67
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.67
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.67
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.67
KOG0639	705	consensus Transducin-like enhancer of split protei	99.67
KOG1273	405	consensus WD40 repeat protein [General function pr	99.66
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.66
KOG2055	514	consensus WD40 repeat protein [General function pr	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.64
PRK04792	448	tolB translocation protein TolB; Provisional	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
PRK01029	428	tolB translocation protein TolB; Provisional	99.62
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.61
KOG0646	476	consensus WD40 repeat protein [General function pr	99.61
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.61
PRK04043	419	tolB translocation protein TolB; Provisional	99.61
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.6
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.6
KOG0646	476	consensus WD40 repeat protein [General function pr	99.6
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.6
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG0267	825	consensus Microtubule severing protein katanin p80	99.59
PRK00178	430	tolB translocation protein TolB; Provisional	99.59
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.59
KOG2048	691	consensus WD40 repeat protein [General function pr	99.59
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.58
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.58
PRK04792	448	tolB translocation protein TolB; Provisional	99.57
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.57
KOG4328	498	consensus WD40 protein [Function unknown]	99.56
PRK00178	430	tolB translocation protein TolB; Provisional	99.55
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.55
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.55
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.55
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.54
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.53
KOG1963	792	consensus WD40 repeat protein [General function pr	99.53
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.51
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.5
PRK11028	330	6-phosphogluconolactonase; Provisional	99.5
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.49
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.48
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.48
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.48
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.47
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
COG2319	466	FOG: WD40 repeat [General function prediction only	99.45
KOG1963	792	consensus WD40 repeat protein [General function pr	99.45
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.45
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.45
PRK04043	419	tolB translocation protein TolB; Provisional	99.44
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.44
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.43
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.42
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.42
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.41
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.41
KOG2139	445	consensus WD40 repeat protein [General function pr	99.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.39
KOG0267	825	consensus Microtubule severing protein katanin p80	99.39
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.39
COG2319	466	FOG: WD40 repeat [General function prediction only	99.38
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.37
COG4946	668	Uncharacterized protein related to the periplasmic	99.37
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.37
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.37
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.35
KOG4227	609	consensus WD40 repeat protein [General function pr	99.34
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.34
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.34
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.32
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.31
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.3
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.3
KOG0649	325	consensus WD40 repeat protein [General function pr	99.29
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.28
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.24
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	99.23
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.23
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.22
KOG2321	703	consensus WD40 repeat protein [General function pr	99.22
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.2
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.18
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.18
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.18
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.18
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.16
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.15
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.15
KOG1188	376	consensus WD40 repeat protein [General function pr	99.13
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.11
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.11
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	99.1
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.08
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.05
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.01
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.0
KOG1310	758	consensus WD40 repeat protein [General function pr	98.99
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.96
KOG1188	376	consensus WD40 repeat protein [General function pr	98.94
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.94
KOG1334	559	consensus WD40 repeat protein [General function pr	98.93
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.87
KOG2321	703	consensus WD40 repeat protein [General function pr	98.87
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.86
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.78
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.74
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.68
KOG4547	541	consensus WD40 repeat-containing protein [General	98.67
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.66
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	98.63
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.62
KOG4227	609	consensus WD40 repeat protein [General function pr	98.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	98.51
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.49
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.49
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.48
KOG0649	325	consensus WD40 repeat protein [General function pr	98.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.41
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.35
KOG1334	559	consensus WD40 repeat protein [General function pr	98.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.31
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.28
KOG1310	758	consensus WD40 repeat protein [General function pr	98.25
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.23
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.21
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.2
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.2
PRK02888	635	nitrous-oxide reductase; Validated	98.19
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.17
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.13
KOG4547	541	consensus WD40 repeat-containing protein [General	98.11
PRK02888	635	nitrous-oxide reductase; Validated	98.09
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.08
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.06
KOG2695	425	consensus WD40 repeat protein [General function pr	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.03
PRK13616	591	lipoprotein LpqB; Provisional	98.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.98
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.98
PRK10115	686	protease 2; Provisional	97.97
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.96
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.95
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.94
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.9
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.89
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.88
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	97.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.72
PRK13616	591	lipoprotein LpqB; Provisional	97.71
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.71
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.68
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.67
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.67
KOG1912	1062	consensus WD40 repeat protein [General function pr	97.53
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.52
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.5
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.48
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.42
KOG4532	344	consensus WD40-like repeat containing protein [Gen	97.4
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.38
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.28
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.28
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.13
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.03
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.82
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.75
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.74
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.7
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.7
COG3391	381	Uncharacterized conserved protein [Function unknow	96.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.65
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.55
PRK10115	686	protease 2; Provisional	96.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.51
KOG4714	319	consensus Nucleoporin [Nuclear structure]	96.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.49
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.46
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	96.45
COG3391	381	Uncharacterized conserved protein [Function unknow	96.42
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.29
KOG2695	425	consensus WD40 repeat protein [General function pr	96.29
KOG3621	726	consensus WD40 repeat-containing protein [General	96.25
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.08
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.03
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.9
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	95.78
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	95.67
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	95.56
KOG4714	319	consensus Nucleoporin [Nuclear structure]	95.52
KOG3621	726	consensus WD40 repeat-containing protein [General	95.4
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	95.12
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.11
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.97
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.97
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	94.82
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	94.78
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.7
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	94.67
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.67
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.48
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.39
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.16
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.02
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.99
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	93.9
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	93.73
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.67
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.65
KOG1409	404	consensus Uncharacterized conserved protein, conta	93.57
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.44
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.35
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.94
KOG2395	644	consensus Protein involved in vacuole import and d	92.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.88
KOG2395	644	consensus Protein involved in vacuole import and d	91.57
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.53
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.49
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.08
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	90.99
KOG1008	783	consensus Uncharacterized conserved protein, conta	90.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.47
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	90.28
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.25
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	90.01
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	89.84
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	89.78
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	89.68
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.6
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.42
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	88.37
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	87.6
KOG2444	238	consensus WD40 repeat protein [General function pr	87.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.37
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	87.35
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.91
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	86.79
KOG2247	615	consensus WD40 repeat-containing protein [General	86.7
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.48
KOG2247	615	consensus WD40 repeat-containing protein [General	86.25
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	86.17
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.48
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.26
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	82.78
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	82.71
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	82.69
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	82.62
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.21
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	80.86
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.69
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	80.11
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	80.05

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.6e-78  Score=567.18  Aligned_cols=350  Identities=46%  Similarity=0.778  Sum_probs=319.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCC-----CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQE-----KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d-----~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~   76 (434)
                      ++.|.|||.|+||.||++++...+     .++.+|+++++.....+..+.+  ..| +++||.|+.++|+...+++++|+
T Consensus        76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q--~~W-~~qfs~dEsl~arlv~nev~f~~  152 (566)
T KOG2315|consen   76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ--NGW-VPQFSIDESLAARLVSNEVQFYD  152 (566)
T ss_pred             eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh--cCc-ccccccchhhhhhhhcceEEEEe
Confidence            468999999999999998766443     5788999999766666666644  779 99999999999999999999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +.++.. ...+++.++|..+++||+ ....+|+|+|+.+|.|+.|+||.++...+.+++++++||+++.++|.||+.|+.
T Consensus       153 ~~~f~~-~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~  231 (566)
T KOG2315|consen  153 LGSFKT-IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTA  231 (566)
T ss_pred             cCCccc-eeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCce
Confidence            998664 678999999999999999 457899999999999999999999965568999999999999999999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG  235 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~  235 (434)
                      ||+++++|+|+++++|||+++||++.+.|. ++.|+|.++||||++.|+|+|++|+||||+||++++|||++|+++++|+
T Consensus       232 LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~  310 (566)
T KOG2315|consen  232 LLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP  310 (566)
T ss_pred             EEEEEEEeecCCCccccccceEEEEEecCc-eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC
Confidence            999999999999999999999999999854 8999999999999999999999999999999999999999999999999


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .+++|++.|||+|++|++|||||+.|.|+|||+.+.++|..+.+.+.+.++|+|||+||+||+++|||||||+|+||||+
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeeeeecc-cceeeEEEcCCCCCCCCchhhhhccCcccccc
Q 013871          316 GSLFFKKMFD-KLFQAEWKPVSPDKFGDISELIKSVGSLKVAE  357 (434)
Q Consensus       316 g~~~~~~~~~-~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~  357 (434)
                      |.++++.++. |||++.|+|....++.. ..++..-.+.+.++
T Consensus       391 G~~l~~~~f~sEL~qv~W~P~~~~~~~~-~~i~~~~~~~~~~~  432 (566)
T KOG2315|consen  391 GSLLHEKMFKSELLQVEWRPFNDKTGNE-EEITELEHPSKNPE  432 (566)
T ss_pred             CceeehhhhhHhHhheeeeecCCcccch-hhhhhhcccccCCC
Confidence            9999999998 79999999998886654 34443333333333

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=100.00  E-value=1.3e-56  Score=416.11  Aligned_cols=360  Identities=27%  Similarity=0.477  Sum_probs=312.7

Q ss_pred             cceEEecCCCcEEEEEecCCC----------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013871            2 LLLLTCLRVGLIIQTFQKSST----------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |..+.|||.|+||+||++...          ..+.++.|||..+|..+.+|......+..|+.++||.|++|+|+...+.
T Consensus        74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s  153 (561)
T COG5354          74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS  153 (561)
T ss_pred             ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence            567899999999999997433          1235799999999999999988766556999999999999999999999


Q ss_pred             EEEEe-CCCCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           72 IQFFD-TTDFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        72 i~v~~-~~~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|++ ..+........++..++..|+|||.+ ...+|+|+|+..+.|++++||.++.   +..+.++++++.+.+++.|
T Consensus       154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW  230 (561)
T COG5354         154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKW  230 (561)
T ss_pred             EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---CCeeeeeeeEeecccEEEE
Confidence            99999 55555556667788899999999984 4568999999999999999999997   8999999999999999999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~  229 (434)
                      ++.|++||+++.++. +++++|||+.+||++++.+. ...+.++..++|++++|+|.+++|++|+|.||..+.+||++++
T Consensus       231 ~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         231 QVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence            999999999999988 99999999999999988754 6777766689999999999999999999999999999999999


Q ss_pred             eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871          230 PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       230 ~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                      ..+.+..+..|++.|||.+++++++||||+.|+|.|||.... +++..+.+.+...|.|||||+++.+++++||+|+|+.
T Consensus       309 l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~  388 (561)
T COG5354         309 LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS  388 (561)
T ss_pred             eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence            988999999999999999999999999999999999998876 5666899999999999999999999999999999999


Q ss_pred             EEEEeecCceeeeeecccceeeEEEcCCCCCCCCchhhhhccCccccccccccCCCCcccCCCCCCCCCCCCCccCCCCc
Q 013871          309 IKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHA  388 (434)
Q Consensus       309 i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pp~~  388 (434)
                      |+|||+.|..++     +++++.|+|..++......    ++.. +++.      ++         ......++|+||++
T Consensus       389 i~l~~v~g~~~f-----el~~~~W~p~~~~~ttsSs----~~~h-~~~~------~~---------~~~k~~Ga~~~e~~  443 (561)
T COG5354         389 IKLWDVYGAKVF-----ELTNITWDPSGQYVTTSSS----CPKH-KVEH------GY---------KIFKIAGALYPEEA  443 (561)
T ss_pred             eEEEEecCchhh-----hhhhccccCCcccceeecc----CCCC-cccc------cc---------ccccccccccChhh
Confidence            999999999877     7999999997666554321    1110 0111      01         12455679999999


Q ss_pred             CCh
Q 013871          389 KQA  391 (434)
Q Consensus       389 ~~~  391 (434)
                      |+.
T Consensus       444 rg~  446 (561)
T COG5354         444 RGG  446 (561)
T ss_pred             hcc
Confidence            964

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-45  Score=344.27  Aligned_cols=340  Identities=23%  Similarity=0.439  Sum_probs=286.6

Q ss_pred             cceEEecCCCcEEEEEecCCCC------CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTP------QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~------~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~   75 (434)
                      |..+.|||+.+||+|+++....      +...++|||+.+|...++|.........|+.+.||.|++|||++..+.|.||
T Consensus       252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIy  331 (698)
T KOG2314|consen  252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIY  331 (698)
T ss_pred             ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEE
Confidence            5678999999999999964332      2368999999999999999874333478999999999999999999999999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +.+.+.......+.+++|+.|+|||. +..||+|+|+....|+++.|..+|.   ++.|+++..|+...|.|.|..+|.+
T Consensus       332 Etpsf~lld~Kslki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  332 ETPSFMLLDKKSLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             ecCceeeecccccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCc---cceeeeccceeeeccEEEeccCCcE
Confidence            99998877778899999999999999 8999999999999999999999999   9999999999999999999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeccc---
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC---  228 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~---  228 (434)
                      ||+-+........+.     ..+.+++....+..+++.   -..+|..++|.|.|+.|++++|.... ++.+|..+.   
T Consensus       408 LcvkvdR~tK~~~~g-----~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~  482 (698)
T KOG2314|consen  408 LCVKVDRHTKSKVKG-----QFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK  482 (698)
T ss_pred             EEEEEEeeccccccc-----eEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence            998754422111122     223344444444555543   36789999999999999999998665 788887652   


Q ss_pred             --ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013871          229 --RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       229 --~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~  304 (434)
                        ..+..+.....|++.|||.|+++++++..+..|+++++|+.  +.+.+....+...+.+.|.|.|||++|+++.+|+.
T Consensus       483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk  562 (698)
T KOG2314|consen  483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHK  562 (698)
T ss_pred             chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhc
Confidence              33556678889999999999999999987778999999998  55667777777778899999999999999999999


Q ss_pred             eCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCCc--hhhhhcc
Q 013871          305 IDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV  350 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~~--~~~~~~~  350 (434)
                      +|++++||++.|+++.+...+++.|+.|||.||.+++.-  .++.|++
T Consensus       563 ~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnL  610 (698)
T KOG2314|consen  563 VDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNL  610 (698)
T ss_pred             cccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999973  4444444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=100.00  E-value=1.2e-40  Score=292.69  Aligned_cols=194  Identities=47%  Similarity=0.911  Sum_probs=184.8

Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013871          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      +++++++.+.|.|+++|++||+.++++.|+++++|||+..||.++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus         1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~   80 (194)
T PF08662_consen    1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS   80 (194)
T ss_pred             CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence            35788899999999999999999999999999999999999999888877788888888899999999999999999999


Q ss_pred             CCCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEE
Q 013871          217 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       217 ~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      +++++.|||+++..+.+++...+|+|.|||+|++|+++|++++.|.|.|||+++.+.+...++..++.++|||||++|++
T Consensus        81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999889889999999999999


Q ss_pred             EEcCCceeeCCcEEEEeecCceeeeeecccceee
Q 013871          297 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA  330 (434)
Q Consensus       297 as~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~  330 (434)
                      ++++||+++||+++||+++|+++++..+++|+++
T Consensus       161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~  194 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV  194 (194)
T ss_pred             EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence            9999999999999999999999999999999875

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-39  Score=290.65  Aligned_cols=310  Identities=17%  Similarity=0.262  Sum_probs=241.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.|++|||+|++|+|.+     .|.++++||+.+..++.++..+.   .-|.|++|||||+.||++ .+|+|++||....
T Consensus       118 Vl~~~fsp~g~~l~tGs-----GD~TvR~WD~~TeTp~~t~KgH~---~WVlcvawsPDgk~iASG~~dg~I~lwdpktg  189 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGS-----GDTTVRLWDLDTETPLFTCKGHK---NWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG  189 (480)
T ss_pred             EEEEEecCCCceEEecC-----CCceEEeeccCCCCcceeecCCc---cEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence            77999999999999988     89999999999999988887754   677899999999999999 5789999998765


Q ss_pred             CC-ceeeeeecCCeeEEEEeCCC----CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           81 PK-GILYRLRVPGVAAFEVSKAP----GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~sp~~----~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +. +...+.|...|.+++|.|-.    ...+|     +.+.++.|+||++..   +..+...+.|...+.+++|.-+|  
T Consensus       190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~la-----s~skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG~g--  259 (480)
T KOG0271|consen  190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLA-----SSSKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGGEG--  259 (480)
T ss_pred             CcccccccCcccceeEEeecccccCCCcccee-----cccCCCCEEEEEccC---ceEEEEeccCccceEEEEEcCCc--
Confidence            43 34566778889999999863    12333     457789999999987   88999999999999999998665  


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceee---eecCCCCCeEEEEECcCCCE-----------------------
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRKEGPVHDVQWSYSGSE-----------------------  209 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~~~~i~~v~wspdg~~-----------------------  209 (434)
                      +  +.+...|.+++.|....+... ....++...   +.+..+.....-+|.|.+++                       
T Consensus       260 l--iySgS~DrtIkvw~a~dG~~~-r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~  336 (480)
T KOG0271|consen  260 L--IYSGSQDRTIKVWRALDGKLC-RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSG  336 (480)
T ss_pred             e--EEecCCCceEEEEEccchhHH-HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCc
Confidence            3  345557888887754332111 111222111   11111222222334455544                       


Q ss_pred             --EEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871          210 --FAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       210 --~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                        ++  +|+.|.++.+|+-.  .+++..+  |..-+|.+.|||||++||+|+||+   .|++||.++|+.+..+.+|  .
T Consensus       337 erlV--SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---SVkLW~g~tGk~lasfRGHv~~  411 (480)
T KOG0271|consen  337 ERLV--SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---SVKLWDGRTGKFLASFRGHVAA  411 (480)
T ss_pred             ceeE--EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc---ceeeeeCCCcchhhhhhhccce
Confidence              44  79999999999863  3344444  788899999999999999999887   9999999999999999988  5


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +..++||.|.|.|++++.      |.++++|++..+.+...   +.+|+|.+.|+|++..+.+.+
T Consensus       412 VYqvawsaDsRLlVS~Sk------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg  470 (480)
T KOG0271|consen  412 VYQVAWSADSRLLVSGSK------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG  470 (480)
T ss_pred             eEEEEeccCccEEEEcCC------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence            556999999999999999      99999999988766553   568999999999998887764

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.9e-33  Score=253.08  Aligned_cols=271  Identities=13%  Similarity=0.178  Sum_probs=227.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~-~~~~i~v~~~~   78 (434)
                      |..+.||+|++.|+|++     .++.++||++.++..+..|.++.   ..+.++.|.|.  +..+|++ .|+++++|+++
T Consensus       178 is~~~fS~ds~~laT~s-----wsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  178 ISGCSFSRDSKHLATGS-----WSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             ceeeEeecCCCeEEEee-----cCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            56789999999999999     99999999999999999998865   56669999996  5577777 58999999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +.........|...|..++|+|+ +.+++.     ...+.+-++||+.+   +..+....+|...+..+.|++||..+  
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPs-G~~L~T-----asfD~tWRlWD~~t---k~ElL~QEGHs~~v~~iaf~~DGSL~--  318 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPS-GKFLGT-----ASFDSTWRLWDLET---KSELLLQEGHSKGVFSIAFQPDGSLA--  318 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCC-Cceeee-----cccccchhhccccc---chhhHhhcccccccceeEecCCCcee--
Confidence            86655667778889999999999 566653     34566889999998   88888889999999999999999963  


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--  234 (434)
                       ++...|..++.|+-.+         + .+++-| .+..+|++|+|||+|.++|  +|+.|++++|||++.. .++.+  
T Consensus       319 -~tGGlD~~~RvWDlRt---------g-r~im~L~gH~k~I~~V~fsPNGy~lA--Tgs~Dnt~kVWDLR~r~~ly~ipA  385 (459)
T KOG0272|consen  319 -ATGGLDSLGRVWDLRT---------G-RCIMFLAGHIKEILSVAFSPNGYHLA--TGSSDNTCKVWDLRMRSELYTIPA  385 (459)
T ss_pred             -eccCccchhheeeccc---------C-cEEEEecccccceeeEeECCCceEEe--ecCCCCcEEEeeecccccceeccc
Confidence             4455788887554222         2 233333 2578999999999999998  7999999999999743 35555  


Q ss_pred             CCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      |..-|..+.|+| .|.+|+++++|+   +++||...++.++..+.+|  .+.+++.||||++|+|++.      |++||+
T Consensus       386 H~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~------DRT~KL  456 (459)
T KOG0272|consen  386 HSNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF------DRTIKL  456 (459)
T ss_pred             ccchhhheEecccCCeEEEEcccCc---ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc------Cceeee
Confidence            788899999999 778999999776   9999999999999999998  6777999999999999999      999999


Q ss_pred             Ee
Q 013871          312 FH  313 (434)
Q Consensus       312 w~  313 (434)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            95

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1e-29  Score=229.26  Aligned_cols=279  Identities=13%  Similarity=0.171  Sum_probs=210.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecC-----CCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSS-----DEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~-----d~~~la~~~-~~~i~v   74 (434)
                      |.|++|||||+.||+.+     .|+.|++||.++|+++. .+.+   |+..+.+++|-|     ..++||+++ ||.|+|
T Consensus       160 VlcvawsPDgk~iASG~-----~dg~I~lwdpktg~~~g~~l~g---H~K~It~Lawep~hl~p~~r~las~skDg~vrI  231 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGS-----KDGSIRLWDPKTGQQIGRALRG---HKKWITALAWEPLHLVPPCRRLASSSKDGSVRI  231 (480)
T ss_pred             EEEEEECCCcchhhccc-----cCCeEEEecCCCCCcccccccC---cccceeEEeecccccCCCccceecccCCCCEEE
Confidence            78999999999999988     89999999999998765 4444   447777899965     678888884 789999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||+...........|...|+++.|--+  .+|.     ++..+.+|++|+...   +..+..+..|..-+..+..|-+  
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~--gliy-----SgS~DrtIkvw~a~d---G~~~r~lkGHahwvN~lalsTd--  299 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGGE--GLIY-----SGSQDRTIKVWRALD---GKLCRELKGHAHWVNHLALSTD--  299 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcCC--ceEE-----ecCCCceEEEEEccc---hhHHHhhcccchheeeeeccch--
Confidence            999876555556677788999999754  2332     457789999999977   6777778888777777766632  


Q ss_pred             eEEEEEEecccccCce----------------------------eecceeEEEEeeCCcceeee-ecCCCCCeEEEEECc
Q 013871          155 GLLAVAQSDVDKTNQS----------------------------YYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSY  205 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~----------------------------~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wsp  205 (434)
                      +++  -....|.++..                            -....+|++++-...+.... ...+...|+.+.|||
T Consensus       300 y~L--Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP  377 (480)
T KOG0271|consen  300 YVL--RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP  377 (480)
T ss_pred             hhh--hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence            110  00011111111                            01122355554332221111 123467899999999


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      |++++|  +++.|..|++||.+. +.+.+|  |-+++..++||.|.++|++++.|   .++++||+++.++...+.+|  
T Consensus       378 d~r~IA--SaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD---sTLKvw~V~tkKl~~DLpGh~D  452 (480)
T KOG0271|consen  378 DGRYIA--SASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD---STLKVWDVRTKKLKQDLPGHAD  452 (480)
T ss_pred             CccEEE--EeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCC---ceEEEEEeeeeeecccCCCCCc
Confidence            999999  688899999999974 445566  78999999999999999999944   59999999999999999877  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+..+.|||||..+++++.      |..++||.
T Consensus       453 EVf~vDwspDG~rV~sggk------dkv~~lw~  479 (480)
T KOG0271|consen  453 EVFAVDWSPDGQRVASGGK------DKVLRLWR  479 (480)
T ss_pred             eEEEEEecCCCceeecCCC------ceEEEeec
Confidence            5666999999999999999      99999996

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=3.7e-28  Score=212.35  Aligned_cols=270  Identities=13%  Similarity=0.141  Sum_probs=214.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.++.|++|.++|++.+     .|+.|.|||.-|...++.++...   .-|..++|+|.|+++|++ .||...||++...
T Consensus        58 i~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s---~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~  129 (343)
T KOG0286|consen   58 IYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPS---SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR  129 (343)
T ss_pred             eeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCc---eeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence            78999999999999999     99999999999999888888764   556678999999999998 4889999999754


Q ss_pred             CCc---e-e--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CC
Q 013871           81 PKG---I-L--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GS  153 (434)
Q Consensus        81 ~~~---~-~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G  153 (434)
                      +..   . .  ...|..-+.++.|-++ +.+|.      +..+.++-+|++++   ++.+.....|..++..+..+| ++
T Consensus       130 d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT------~SGD~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~  199 (343)
T KOG0286|consen  130 DAEGNVRVSRELAGHTGYLSCCRFLDD-NHILT------GSGDMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDG  199 (343)
T ss_pred             cccccceeeeeecCccceeEEEEEcCC-CceEe------cCCCceEEEEEccc---ceEEEEecCCcccEEEEecCCCCC
Confidence            211   1 1  1223344666677664 33332      35567999999999   899999999999999999999 77


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~  231 (434)
                      +..   .+...|++-+.       |.+  ... .+...+ .++..|+++.|.|+|..|+  +|+.|+..++||++.. ++
T Consensus       200 ntF---vSg~cD~~akl-------WD~--R~~-~c~qtF~ghesDINsv~ffP~G~afa--tGSDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  200 NTF---VSGGCDKSAKL-------WDV--RSG-QCVQTFEGHESDINSVRFFPSGDAFA--TGSDDATCRLYDLRADQEL  264 (343)
T ss_pred             CeE---Eecccccceee-------eec--cCc-ceeEeecccccccceEEEccCCCeee--ecCCCceeEEEeecCCcEE
Confidence            763   33445666553       333  222 233333 3588999999999998888  8999999999999853 34


Q ss_pred             EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013871          232 LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       232 ~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~  305 (434)
                      ..+    ...++++++||-.|++|..|.   .+.++.+||.-.++.+..+.+|  .++++..+|||-.++|++-      
T Consensus       265 a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW------  335 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW------  335 (343)
T ss_pred             eeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch------
Confidence            444    357889999999999999886   4579999999999999999888  6777999999999999999      


Q ss_pred             CCcEEEEe
Q 013871          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      |..+|||.
T Consensus       336 Ds~lriW~  343 (343)
T KOG0286|consen  336 DSTLRIWA  343 (343)
T ss_pred             hHheeecC
Confidence            99999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=6.7e-29  Score=226.69  Aligned_cols=262  Identities=18%  Similarity=0.192  Sum_probs=215.1

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ..+..+.||.|++.||+++ +|.++||+.++.......+.|...|..+.|+|. .+..++     +...++.+++|++.+
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~la-----t~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLA-----TASADGTVKLWKLSQ  250 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcccee-----eeccCCceeeeccCC
Confidence            4566789999999999995 789999999998777788889999999999998 355555     346778999999988


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                         ..++..++.|...+..++|+|+|++|..   +..|.+.+.|+-++.         .+....-.+..+|++++|.|||
T Consensus       251 ---e~~l~~l~gH~~RVs~VafHPsG~~L~T---asfD~tWRlWD~~tk---------~ElL~QEGHs~~v~~iaf~~DG  315 (459)
T KOG0272|consen  251 ---ETPLQDLEGHLARVSRVAFHPSGKFLGT---ASFDSTWRLWDLETK---------SELLLQEGHSKGVFSIAFQPDG  315 (459)
T ss_pred             ---CcchhhhhcchhhheeeeecCCCceeee---cccccchhhcccccc---------hhhHhhcccccccceeEecCCC
Confidence               7899999999999999999999999643   447888775532221         1222333457899999999999


Q ss_pred             CEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871          208 SEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  282 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~  282 (434)
                      ..++  +|++|..-+|||++ +..+.-+  |..+|.++.|||+|-.||+|+.||   +++|||++..+.+.++.+|  -+
T Consensus       316 SL~~--tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~ly~ipAH~nlV  390 (459)
T KOG0272|consen  316 SLAA--TGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSELYTIPAHSNLV  390 (459)
T ss_pred             ceee--ccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccccceecccccchh
Confidence            8888  89999999999997 4444444  889999999999999999999555   9999999999889999888  34


Q ss_pred             eEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecccceeeEEEcCCCCCCCC
Q 013871          283 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       283 ~~~~wsp-dg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+.|+| .|.+|+|++.      |++++||.-.+- ++..  .+-+.+..+...|+...+.+.
T Consensus       391 S~Vk~~p~~g~fL~Tasy------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  391 SQVKYSPQEGYFLVTASY------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS  448 (459)
T ss_pred             hheEecccCCeEEEEccc------CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence            4599999 7899999999      999999998654 3333  366789999999998877765

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.96  E-value=8.9e-27  Score=199.48  Aligned_cols=269  Identities=13%  Similarity=0.203  Sum_probs=205.0

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc--eeeee
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG--ILYRL   88 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~--~~~~~   88 (434)
                      .-+|+|.+     .|.+|++|.+.+|.|.+++++..   ..+..+..+||.++||.+....|++||+++....  .....
T Consensus        10 ~viLvsA~-----YDhTIRfWqa~tG~C~rTiqh~d---sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~   81 (311)
T KOG0315|consen   10 PVILVSAG-----YDHTIRFWQALTGICSRTIQHPD---SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEG   81 (311)
T ss_pred             ceEEEecc-----CcceeeeeehhcCeEEEEEecCc---cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEec
Confidence            35888888     89999999999999999988754   6677999999999999999999999999875542  33445


Q ss_pred             ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCCeEEEEEEeccccc
Q 013871           89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKT  167 (434)
Q Consensus        89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~  167 (434)
                      +..+|..+.|.-++ .-+.     +++.+++++||++..     +.+++.+ +.+.+.++..+|.-..|++     .|++
T Consensus        82 h~kNVtaVgF~~dg-rWMy-----TgseDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis-----~dqs  145 (311)
T KOG0315|consen   82 HTKNVTAVGFQCDG-RWMY-----TGSEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELIS-----GDQS  145 (311)
T ss_pred             cCCceEEEEEeecC-eEEE-----ecCCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEe-----ecCC
Confidence            56789999888874 3222     468899999999965     3333333 4578888999998888766     3444


Q ss_pred             CceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ceeEEe--CCcC
Q 013871          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGP  238 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-------~~~~~~--~~~~  238 (434)
                      +..     .+|.+..+.- .+....+...+|.++...|||+.++.  ...-|..++|++-+       .++..+  |.+.
T Consensus       146 g~i-----rvWDl~~~~c-~~~liPe~~~~i~sl~v~~dgsml~a--~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~  217 (311)
T KOG0315|consen  146 GNI-----RVWDLGENSC-THELIPEDDTSIQSLTVMPDGSMLAA--ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH  217 (311)
T ss_pred             CcE-----EEEEccCCcc-ccccCCCCCcceeeEEEcCCCcEEEE--ecCCccEEEEEccCCCccccceEhhheecccce
Confidence            432     2343322211 22222233578999999999999994  55678999999743       233334  7899


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +..+.+|||+++|++++.+   .+++||+.++. +.-..+++|  .+..|+||.||+||+||+.      |+.+++|++.
T Consensus       218 il~C~lSPd~k~lat~ssd---ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~  288 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATCSSD---KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLS  288 (311)
T ss_pred             EEEEEECCCCcEEEeecCC---ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccc
Confidence            9999999999999999955   59999999988 666667777  7888999999999999999      9999999994


Q ss_pred             -Cceee
Q 013871          316 -GSLFF  320 (434)
Q Consensus       316 -g~~~~  320 (434)
                       |+.+.
T Consensus       289 ~~k~v~  294 (311)
T KOG0315|consen  289 AGKEVR  294 (311)
T ss_pred             cCceee
Confidence             55443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=7e-27  Score=216.14  Aligned_cols=272  Identities=14%  Similarity=0.262  Sum_probs=213.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|+-+|++|||+.     .|+.++||+ .+|..+.+|.+++   ..+.++.|+.+|.|++++ .|+++.+||....
T Consensus       238 VT~L~Wn~~G~~LatG~-----~~G~~riw~-~~G~l~~tl~~Hk---gPI~slKWnk~G~yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  238 VTSLDWNNDGTLLATGS-----EDGEARIWN-KDGNLISTLGQHK---GPIFSLKWNKKGTYILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             cceEEecCCCCeEEEee-----cCcEEEEEe-cCchhhhhhhccC---CceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence            78999999999999999     999999999 5677778876654   788899999999999998 6899999999775


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .......++...--++.|-.+  ..+++     .+.++.|.++.+..   ..|+.+...|...+..+.|+|.|..|+.  
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~~--~~F~t-----s~td~~i~V~kv~~---~~P~~t~~GH~g~V~alk~n~tg~LLaS--  376 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQSN--DEFAT-----SSTDGCIHVCKVGE---DRPVKTFIGHHGEVNALKWNPTGSLLAS--  376 (524)
T ss_pred             eEEEeeeeccCCccceEEecC--ceEee-----cCCCceEEEEEecC---CCcceeeecccCceEEEEECCCCceEEE--
Confidence            544444555444345666554  22221     34567899999988   8999999999999999999999986543  


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCE-------EEEEEccCCCeEEEEec-cccee
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSE-------FAVVYGFMPASATIFNK-KCRPI  231 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~-------~av~~g~~~~~v~l~d~-~~~~~  231 (434)
                       ...|.+.+.|.+.+.       +   +.-.+ .+...|+.+.|||+|.-       +.+++...++.|++||. ++.++
T Consensus       377 -~SdD~TlkiWs~~~~-------~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i  445 (524)
T KOG0273|consen  377 -CSDDGTLKIWSMGQS-------N---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI  445 (524)
T ss_pred             -ecCCCeeEeeecCCC-------c---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence             335566654432211       1   11111 13668999999998652       23335667899999999 47888


Q ss_pred             EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCc
Q 013871          232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       232 ~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                      +.|  |..+|.+++|||+|+++|+|+   .+|-|.+|++++++.++...+.+. ..+.|+-+|.+|..+..      |+.
T Consensus       446 ~~f~kH~~pVysvafS~~g~ylAsGs---~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s------d~~  516 (524)
T KOG0273|consen  446 HTLMKHQEPVYSVAFSPNGRYLASGS---LDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS------DGS  516 (524)
T ss_pred             EeeccCCCceEEEEecCCCcEEEecC---CCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec------CCC
Confidence            888  899999999999999999998   557999999999999999988755 56999999999999888      999


Q ss_pred             EEEEee
Q 013871          309 IKIFHH  314 (434)
Q Consensus       309 i~iw~~  314 (434)
                      +++-|+
T Consensus       517 vcvldl  522 (524)
T KOG0273|consen  517 VCVLDL  522 (524)
T ss_pred             ceEEEe
Confidence            998775

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=1e-25  Score=210.98  Aligned_cols=314  Identities=13%  Similarity=0.150  Sum_probs=203.1

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      +|.|+.|||||++++|.+     .|+.+.|||=.+|+.+..+.....|+..+-++.||||++.+++.+ |.+++|||+..
T Consensus       192 FV~~VRysPDG~~Fat~g-----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~  266 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAG-----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST  266 (603)
T ss_pred             ceeeEEECCCCCeEEEec-----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence            589999999999999999     899999999999999999985555778888999999999999985 66999999855


Q ss_pred             CCCcee-------------------------------------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871           80 FPKGIL-------------------------------------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        80 ~~~~~~-------------------------------------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ......                                           ...|...|+.+..+|++ .+|.     ++..
T Consensus       267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~-----Sgsy  340 (603)
T KOG0318|consen  267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIY-----SGSY  340 (603)
T ss_pred             cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEE-----eecc
Confidence            322111                                           11123356666666664 2222     2456


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe----------cccccCceeecc------------
Q 013871          117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS----------DVDKTNQSYYGE------------  174 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~----------~~d~~~~~~~g~------------  174 (434)
                      ++.|.-|+....... . ..-..|...+..|.-+..|..+.+..+.          ...+....-.|.            
T Consensus       341 DG~I~~W~~~~g~~~-~-~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~  418 (603)
T KOG0318|consen  341 DGHINSWDSGSGTSD-R-LAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG  418 (603)
T ss_pred             CceEEEEecCCcccc-c-cccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence            678888887652100 0 0001122222222222222211111000          000000000000            


Q ss_pred             -------eeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-----EeCCcCeeEE
Q 013871          175 -------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----ELGSGPYNTV  242 (434)
Q Consensus       175 -------~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-----~~~~~~~~~i  242 (434)
                             ..|.++.-.   .....++......+++.+|+++++||  |..|+++.+|.+.+..+.     .-|.++++++
T Consensus       419 ~avv~~~~~iv~l~~~---~~~~~~~~~y~~s~vAv~~~~~~vaV--GG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQ---TKVSSIPIGYESSAVAVSPDGSEVAV--GGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             EEEEEecCcEEEEecC---CcceeeccccccceEEEcCCCCEEEE--ecccceEEEEEecCCcccceeeeecccCCceEE
Confidence                   011111110   11111112345568999999999996  888999999988754322     2389999999


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEE---EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-
Q 013871          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG---TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-  318 (434)
Q Consensus       243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~---~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-  318 (434)
                      +|||||.|||++.   ..+.+.+||+.+++...   .|....+.+++|||+..++|||+.      |..|.||.+..-. 
T Consensus       494 aySpd~~yla~~D---a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl------Dt~Viiysv~kP~~  564 (603)
T KOG0318|consen  494 AYSPDGAYLAAGD---ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL------DTNVIIYSVKKPAK  564 (603)
T ss_pred             EECCCCcEEEEec---cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc------cceEEEEEccChhh
Confidence            9999999999987   66899999999886532   223336778999999999999999      9999999996432 


Q ss_pred             ---eeeeecccceeeEEEcCCCCCCCC
Q 013871          319 ---FFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       319 ---~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                         +...|...+..+.|--.. .+.+.
T Consensus       565 ~i~iknAH~~gVn~v~wlde~-tvvSs  590 (603)
T KOG0318|consen  565 HIIIKNAHLGGVNSVAWLDES-TVVSS  590 (603)
T ss_pred             heEeccccccCceeEEEecCc-eEEec
Confidence               222355669999998654 44443

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=8.6e-25  Score=212.47  Aligned_cols=308  Identities=14%  Similarity=0.186  Sum_probs=209.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+++.||+|++|+...     +.+...+-++.....++.|..+    ..+-+++|||||+++|.+..+-++||..+...
T Consensus        58 I~~ialSp~g~lllavd-----E~g~~~lvs~~~r~Vlh~f~fk----~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~  128 (893)
T KOG0291|consen   58 ITRIALSPDGTLLLAVD-----ERGRALLVSLLSRSVLHRFNFK----RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI  128 (893)
T ss_pred             eEEEEeCCCceEEEEEc-----CCCcEEEEecccceeeEEEeec----CccceEEECCCCcEEEEEecceeEEEecCcch
Confidence            67899999999999988     7888888898888888888776    66779999999999999999999999987643


Q ss_pred             C--------ceeeeeecCCeeEEEEeCCCCC--------------------------------eEEEEec-CC-----CC
Q 013871           82 K--------GILYRLRVPGVAAFEVSKAPGS--------------------------------HVAVFVP-ES-----KG  115 (434)
Q Consensus        82 ~--------~~~~~~~~~~v~~~~~sp~~~~--------------------------------~ia~~~~-~~-----~~  115 (434)
                      .        ......+...|.++.||.|...                                .+++|.. ++     -+
T Consensus       129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs  208 (893)
T KOG0291|consen  129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS  208 (893)
T ss_pred             hcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe
Confidence            2        1122345678999999987321                                1111110 00     12


Q ss_pred             CCceEEEEEcCCCC--------------------C---------------------------------------------
Q 013871          116 SPASVQIYACGKDL--------------------Q---------------------------------------------  130 (434)
Q Consensus       116 ~~~~v~i~~~~~~~--------------------~---------------------------------------------  130 (434)
                      .+|.+.+|.+...-                    .                                             
T Consensus       209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~  288 (893)
T KOG0291|consen  209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGE  288 (893)
T ss_pred             cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCe
Confidence            34566666655100                    0                                             


Q ss_pred             --------CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc--eeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871          131 --------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ--SYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       131 --------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~--~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                              ...+.+.+.....+..+.||..|.+|++.++    +.++  .|.-....|.+...         .|...+.+
T Consensus       289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQ---------gH~~~i~~  355 (893)
T KOG0291|consen  289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQ---------GHSDRITS  355 (893)
T ss_pred             eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeecc---------ccccceee
Confidence                    1111111222233445667777777766421    2222  11111122222221         23568999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013871          201 VQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------  270 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-------  270 (434)
                      +++||||..++  +|..|++|++||.. +-++.+|  |+..++.+.|+..|+.|++++   +||+|+.||+..       
T Consensus       356 l~YSpDgq~ia--TG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNfRTf  430 (893)
T KOG0291|consen  356 LAYSPDGQLIA--TGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNFRTF  430 (893)
T ss_pred             EEECCCCcEEE--eccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccceeeee
Confidence            99999999998  79999999999985 3444455  788888888888888888777   667777777764       


Q ss_pred             -------------------------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          271 -------------------------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       271 -------------------------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                                                           |+++-.+.+|  .+..++|+|+|..|++++-      |++|||
T Consensus       431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW------DkTVRi  504 (893)
T KOG0291|consen  431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW------DKTVRI  504 (893)
T ss_pred             cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc------cceEEE
Confidence                                                 3333344455  3445899999999999999      999999


Q ss_pred             EeecCc--eeeee-ecccceeeEEEcCCCCCCCC
Q 013871          312 FHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~g~--~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |++-+.  .+... ...++..+.++|++..+..+
T Consensus       505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence            999554  33333 34579999999999887664

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=1.1e-24  Score=202.09  Aligned_cols=272  Identities=16%  Similarity=0.221  Sum_probs=204.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|+|+|++|++.+     .|+.|.+|++.+++.+..+..+.   ..+..+.|++++++++++. ++.|++|+....
T Consensus        12 i~~~~~~~~~~~l~~~~-----~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200          12 VTCVAFSPDGKLLATGS-----GDGTIKVWDLETGELLRTLKGHT---GPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             EEEEEEcCCCCEEEEee-----cCcEEEEEEeeCCCcEEEEecCC---cceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            78999999999999988     78999999999888767665543   4455899999998888875 789999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...+.++.|+|+ +..++.-     +..+.+.+|++.+   .+.+.....+...+..+.|+|++..++...
T Consensus        84 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  154 (289)
T cd00200          84 ECVRTLTGHTSYVSSVAFSPD-GRILSSS-----SRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFVASSS  154 (289)
T ss_pred             cceEEEeccCCcEEEEEEcCC-CCEEEEe-----cCCCeEEEEECCC---cEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence            443334444557999999998 4444431     2467899999986   566666666677788999999977655431


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCc
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~  237 (434)
                         .|..         ++.++............+...+.++.|+|+++.+++  +..++.+.+||++. ..+..+  +..
T Consensus       155 ---~~~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~  220 (289)
T cd00200         155 ---QDGT---------IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHEN  220 (289)
T ss_pred             ---CCCc---------EEEEEccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCC
Confidence               1222         333333322111111133568999999999988885  44488999999974 444444  566


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+.++.|+|++.++++++   .+|.|++||+.+++.+..+..+  .+..++|+|+|.+|++++.      |+.++||+
T Consensus       221 ~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~iw~  289 (289)
T cd00200         221 GVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA------DGTIRIWD  289 (289)
T ss_pred             ceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC------CCeEEecC
Confidence            899999999988888776   4679999999988888777765  4667999999999999999      99999996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.95  E-value=1e-24  Score=189.77  Aligned_cols=274  Identities=17%  Similarity=0.233  Sum_probs=202.8

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEc-----CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKT-----ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~-----~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |..++..+.+ ..|++.+     .|+.+.+|++     +.|..++.|.+++   -.+..+.-++||+++.+++ |+++++
T Consensus        18 Vt~la~~~~~~~~l~sas-----rDk~ii~W~L~~dd~~~G~~~r~~~GHs---H~v~dv~~s~dg~~alS~swD~~lrl   89 (315)
T KOG0279|consen   18 VTALAIKIKNSDILVSAS-----RDKTIIVWKLTSDDIKYGVPVRRLTGHS---HFVSDVVLSSDGNFALSASWDGTLRL   89 (315)
T ss_pred             EEEEEeecCCCceEEEcc-----cceEEEEEEeccCccccCceeeeeeccc---eEecceEEccCCceEEeccccceEEE
Confidence            6677777774 4555666     7899999987     4567788888865   3455778999999999985 789999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~  152 (434)
                      ||+...........|...|.++++||++ ..|.     ++..+.++.+|++-.    ....++.-.  +.-+.+++|+|.
T Consensus        90 WDl~~g~~t~~f~GH~~dVlsva~s~dn-~qiv-----SGSrDkTiklwnt~g----~ck~t~~~~~~~~WVscvrfsP~  159 (315)
T KOG0279|consen   90 WDLATGESTRRFVGHTKDVLSVAFSTDN-RQIV-----SGSRDKTIKLWNTLG----VCKYTIHEDSHREWVSCVRFSPN  159 (315)
T ss_pred             EEecCCcEEEEEEecCCceEEEEecCCC-ceee-----cCCCcceeeeeeecc----cEEEEEecCCCcCcEEEEEEcCC
Confidence            9998875555566778889999999994 4443     356677999999864    333333222  556789999998


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-ccee
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~  231 (434)
                      ....+ +.+...|++.+.|       .++  +..-...-+.+.+.++.+++||||...+  +|..++++.+||++ ++.+
T Consensus       160 ~~~p~-Ivs~s~DktvKvW-------nl~--~~~l~~~~~gh~~~v~t~~vSpDGslca--sGgkdg~~~LwdL~~~k~l  227 (315)
T KOG0279|consen  160 ESNPI-IVSASWDKTVKVW-------NLR--NCQLRTTFIGHSGYVNTVTVSPDGSLCA--SGGKDGEAMLWDLNEGKNL  227 (315)
T ss_pred             CCCcE-EEEccCCceEEEE-------ccC--CcchhhccccccccEEEEEECCCCCEEe--cCCCCceEEEEEccCCcee
Confidence            63322 3445567777754       332  1111112234688999999999999888  79999999999995 5667


Q ss_pred             EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----------CCceEEEECCCCCEEEEEEc
Q 013871          232 LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----------ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       232 ~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----------~~~~~~~wspdg~~l~tas~  299 (434)
                      ..+ +...|++++|+|+--+|+.+. +.   .|+|||+++++++..+.-           ...+.++||+||..|+.+-+
T Consensus       228 ysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t  303 (315)
T KOG0279|consen  228 YSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT  303 (315)
T ss_pred             EeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence            777 678999999999877777654 33   599999998876654431           12344999999999999999


Q ss_pred             CCceeeCCcEEEEeec
Q 013871          300 APRLQIDNGIKIFHHN  315 (434)
Q Consensus       300 ~prl~~D~~i~iw~~~  315 (434)
                            ||.|++|.+.
T Consensus       304 ------d~~irv~qv~  313 (315)
T KOG0279|consen  304 ------DNVIRVWQVA  313 (315)
T ss_pred             ------CCcEEEEEee
Confidence                  9999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=2.9e-25  Score=205.44  Aligned_cols=300  Identities=14%  Similarity=0.244  Sum_probs=220.4

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCC--CcE-----EEEEe---ec-CcCCCCCCeeeecCCCcEEEEe-c
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTET--GEA-----VYQLF---QK-NMTKTTWPSIRFSSDEAVACRM-A   68 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~--g~~-----~~~~~---~~-~~~~~~~~~~~~S~d~~~la~~-~   68 (434)
                      |.+.+|+|--. .|++.+     .|-..++|++..  ..+     ++...   .+ ......+++++|+.||.+||++ .
T Consensus       181 V~~~~WnP~~~~llasg~-----~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  181 VFICAWNPLRDGLLASGS-----GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             eEEEecCchhhhhhhccC-----CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            55677888665 666655     788899999864  111     11110   11 1122678899999999999999 4


Q ss_pred             CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871           69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      +|++++|+.+... ......|-..|.++.|+-.+ .+|+     +.+.++++.||+.-.   +....+.+++......+.
T Consensus       256 ~G~~riw~~~G~l-~~tl~~HkgPI~slKWnk~G-~yil-----S~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVd  325 (524)
T KOG0273|consen  256 DGEARIWNKDGNL-ISTLGQHKGPIFSLKWNKKG-TYIL-----SGGVDGTTILWDAHT---GTVKQQFEFHSAPALDVD  325 (524)
T ss_pred             CcEEEEEecCchh-hhhhhccCCceEEEEEcCCC-CEEE-----eccCCccEEEEeccC---ceEEEeeeeccCCccceE
Confidence            7899999987633 24455666789999999984 4444     357889999999977   777888888888878899


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-  227 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-  227 (434)
                      |-.+.++...    +.|...       .+|.++..+  ....-..|.++|..+.|.|.|..|+  +++.|++++||+.. 
T Consensus       326 W~~~~~F~ts----~td~~i-------~V~kv~~~~--P~~t~~GH~g~V~alk~n~tg~LLa--S~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  326 WQSNDEFATS----STDGCI-------HVCKVGEDR--PVKTFIGHHGEVNALKWNPTGSLLA--SCSDDGTLKIWSMGQ  390 (524)
T ss_pred             EecCceEeec----CCCceE-------EEEEecCCC--cceeeecccCceEEEEECCCCceEE--EecCCCeeEeeecCC
Confidence            9887765322    222221       234443322  2222234689999999999999999  67788999999964 


Q ss_pred             cceeEEe--CCcCeeEEEECCCCC---------eEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871          228 CRPILEL--GSGPYNTVRWNPKGK---------FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       228 ~~~~~~~--~~~~~~~i~~SP~g~---------~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ....+.+  |...+.++.|||+|.         .|+++++++   +|++||+..+.++..+..|  .+..++|||+|+|+
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl  467 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL  467 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence            5555665  678899999999653         688888665   9999999999999999665  66679999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCc-eeeeeec-ccceeeEEEcCCCCCC
Q 013871          295 MTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-DKLFQAEWKPVSPDKF  340 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~~g~-~~~~~~~-~~~~~~~w~p~~~~~~  340 (434)
                      ++|+.      |+.|.||+.... +++...- .-++.++|+-.+..+.
T Consensus       468 AsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  468 ASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG  509 (524)
T ss_pred             EecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence            99999      999999999554 4444322 4589999999885443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.6e-26  Score=207.52  Aligned_cols=272  Identities=15%  Similarity=0.180  Sum_probs=191.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |+.+.||++|+||||++     .|.+..||++.....   .+++.++.   ..|..+.||||++||++++ +..+.+||+
T Consensus       227 VWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d~~~kl~~tlvgh~---~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  227 VWFLQFSHNGKYLASAS-----KDSTAIIWIVVYDVHFKLKKTLVGHS---QPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             EEEEEEcCCCeeEeecc-----CCceEEEEEEecCcceeeeeeeeccc---CceEEEEECCCCCeEEecCchHheeeccC
Confidence            78999999999999999     899999999865433   55666644   6777999999999998875 568999999


Q ss_pred             CCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCe
Q 013871           78 TDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~  155 (434)
                      ..........- +.-.+.+++|-||+-.+++      ++.+..+..|++..    ..+......+ ..+..++.++||++
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~------Gs~dr~i~~wdlDg----n~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT------GSPDRTIIMWDLDG----NILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEe------cCCCCcEEEecCCc----chhhcccccccceeEEEEEcCCCcE
Confidence            88654322221 2235889999999544332      45567899999864    2222222222 23568899999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~  234 (434)
                      ++.++   .|+.+..|       ..+..   ..+-.+..+.+|++++.|.||+++.+  .-.+..+.+||++... +..+
T Consensus       369 vl~v~---~d~~i~l~-------~~e~~---~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY  433 (519)
T KOG0293|consen  369 VLLVT---VDKKIRLY-------NREAR---VDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKY  433 (519)
T ss_pred             EEEEe---cccceeee-------chhhh---hhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHh
Confidence            88765   55555433       22111   11112233679999999999988875  5667899999997333 2222


Q ss_pred             --CCcC--eeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeC
Q 013871          235 --GSGP--YNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQID  306 (434)
Q Consensus       235 --~~~~--~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~prl~~D  306 (434)
                        |+..  +-.-+|-- +..++++|+   .|++|+||+..+++.+..+.+|  .+.+++|+|... +||+|+.      |
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGS---ED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD------D  504 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGS---EDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD------D  504 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecC---CCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC------C
Confidence              2221  22223333 346888877   6789999999999999999998  556699999654 5778888      9


Q ss_pred             CcEEEEeec
Q 013871          307 NGIKIFHHN  315 (434)
Q Consensus       307 ~~i~iw~~~  315 (434)
                      |+||||...
T Consensus       505 gtIRIWg~~  513 (519)
T KOG0293|consen  505 GTIRIWGPS  513 (519)
T ss_pred             CeEEEecCC
Confidence            999999754

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-23  Score=183.32  Aligned_cols=261  Identities=15%  Similarity=0.171  Sum_probs=197.0

Q ss_pred             CCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013871           49 KTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        49 ~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~  121 (434)
                      ...+..++-.+.+ ..++.+ .|..|.+|++...+..     ...+.|...|..+.+++++...+.      .+.++.++
T Consensus        15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS------~swD~~lr   88 (315)
T KOG0279|consen   15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS------ASWDGTLR   88 (315)
T ss_pred             CceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe------ccccceEE
Confidence            3666677777764 455555 4669999998654321     123345557899999999654443      47788999


Q ss_pred             EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC---CCCe
Q 013871          122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPV  198 (434)
Q Consensus       122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i  198 (434)
                      +||+..   ++...+...|..++.++++++|...|+   +...|++.+.|..         .+  ++..++..   .+-|
T Consensus        89 lWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qiv---SGSrDkTiklwnt---------~g--~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   89 LWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQIV---SGSRDKTIKLWNT---------LG--VCKYTIHEDSHREWV  151 (315)
T ss_pred             EEEecC---CcEEEEEEecCCceEEEEecCCCceee---cCCCcceeeeeee---------cc--cEEEEEecCCCcCcE
Confidence            999998   788899999999999999999999853   4557888775532         22  22222221   4689


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      .++.|+|+.....+++++.|+.+++||+++.++.. +  |.+.+|.+.+||||.++++||   .+|.+.+||++.++.+.
T Consensus       152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~~k~ly  228 (315)
T KOG0279|consen  152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNEGKNLY  228 (315)
T ss_pred             EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccCCceeE
Confidence            99999999877777789999999999998655443 3  788999999999999999988   67899999999999999


Q ss_pred             EeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec-----------ccceeeEEEcCCCCCCCC
Q 013871          276 TTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF-----------DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       276 ~~~~~~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~-----------~~~~~~~w~p~~~~~~~~  342 (434)
                      .+.+..++. ++|+|.--.| .+.+      +.+|+||+...+ ++.....           .....++|.+++..||..
T Consensus       229 sl~a~~~v~sl~fspnrywL-~~at------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g  301 (315)
T KOG0279|consen  229 SLEAFDIVNSLCFSPNRYWL-CAAT------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG  301 (315)
T ss_pred             eccCCCeEeeEEecCCceeE-eecc------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence            998876555 9999995444 4445      788999999655 3433322           245678899999999975

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.93  E-value=1.3e-24  Score=212.89  Aligned_cols=244  Identities=13%  Similarity=0.176  Sum_probs=190.9

Q ss_pred             EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-----------C--------------------cee
Q 013871           38 AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-----------K--------------------GIL   85 (434)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-----------~--------------------~~~   85 (434)
                      +.+++....   ..+.|..||+|+++||.+. +..|++|.+....           .                    ...
T Consensus       370 c~YT~~nt~---~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~  446 (707)
T KOG0263|consen  370 CMYTFHNTY---QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT  446 (707)
T ss_pred             EEEEEEEcC---CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence            345554432   5677999999999999995 5699999975210           0                    011


Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      ...|...|.+..|+|+...++.      ...+.+||+|.+.+   ...+.....|...+..+.|+|-|-+.   ++...|
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlS------cSED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYF---atas~D  514 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLS------CSEDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYF---ATASHD  514 (707)
T ss_pred             eecCCCceeeeeecccccceee------ccCCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEE---EecCCC
Confidence            2234556899999998544443      36678999999998   67777778999999999999999774   444578


Q ss_pred             ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEE
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTV  242 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i  242 (434)
                      ++-+.|.+..         ....++-..+-..|.++.|+|++.+++  +|+.|.++++||.. +..+.-|  |++++.++
T Consensus       515 ~tArLWs~d~---------~~PlRifaghlsDV~cv~FHPNs~Y~a--TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al  583 (707)
T KOG0263|consen  515 QTARLWSTDH---------NKPLRIFAGHLSDVDCVSFHPNSNYVA--TGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL  583 (707)
T ss_pred             ceeeeeeccc---------CCchhhhcccccccceEEECCcccccc--cCCCCceEEEEEcCCCcEEEEecCCCCceEEE
Confidence            8877664432         223334444578899999999999999  79999999999985 5555555  89999999


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +|||+|++|++|+   .+|.|.+||+.+++.+..+.+|  .+.++.||.||..|++++.      |++|++||+.-
T Consensus       584 ~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~------DnsV~lWD~~~  650 (707)
T KOG0263|consen  584 AFSPCGRYLASGD---EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA------DNSVRLWDLTK  650 (707)
T ss_pred             EEcCCCceEeecc---cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC------CCeEEEEEchh
Confidence            9999999999998   6789999999999999888877  4445999999999999999      99999999843

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=4.2e-23  Score=200.86  Aligned_cols=286  Identities=15%  Similarity=0.181  Sum_probs=225.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~   79 (434)
                      |+|.+|+|.-+.||+.-     ..+...++.+..-.+++.+.-..   ..+..+.|+.-|.++|.+..  +++.||+...
T Consensus       268 vtaa~fH~~t~~lvvgF-----ssG~f~LyelP~f~lih~LSis~---~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  268 VTAAAFHKGTNLLVVGF-----SSGEFGLYELPDFNLIHSLSISD---QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             eeeeeccCCceEEEEEe-----cCCeeEEEecCCceEEEEeeccc---ceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence            67899999888998876     56788899999999999876643   56668999999999999976  5999999877


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ..-....+.|...+.+++.||| +..|+     +++.++.|+||+...   +-++.+.+-|...++.+.|+..|+.++..
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpD-gq~ia-----TG~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llss  410 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPD-GQLIA-----TGAEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSS  410 (893)
T ss_pred             cceeeeccccccceeeEEECCC-CcEEE-----eccCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence            5433344567889999999999 67777     467889999999987   77888888899999999999999876443


Q ss_pred             EEecccccCceee--------------------------------c---ceeEEEEeeCCcceeeeecCCCCCeEEEEEC
Q 013871          160 AQSDVDKTNQSYY--------------------------------G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       160 ~~~~~d~~~~~~~--------------------------------g---~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws  204 (434)
                         ..|.+.+.|.                                |   ...|+.+++..++...+--.|++||..++|+
T Consensus       411 ---SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~  487 (893)
T KOG0291|consen  411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS  487 (893)
T ss_pred             ---ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence               2444444331                                1   1234455555554445555679999999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecc--cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--
Q 013871          205 YSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~--~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--  279 (434)
                      |+|..++  +++.|.+|++||+=  ...+-.+ ....+..+.|+|+|+-||++.   ++|+|.|||.+.+..+..+++  
T Consensus       488 ~~~~~La--S~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~Idgrk  562 (893)
T KOG0291|consen  488 PDGSLLA--SGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRK  562 (893)
T ss_pred             cccCeEE--eccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchh
Confidence            9999888  79999999999983  2344444 467789999999999999999   888999999987665533321  


Q ss_pred             --------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          280 --------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       280 --------------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                                          ...+.+++|+||.+|++|+.      .+.|+|||+....
T Consensus       563 D~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~------sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  563 DLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE------SNSICIYDVPEGV  615 (893)
T ss_pred             hccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC------cccEEEEECchhh
Confidence                                13456999999999999999      9999999995543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=8.1e-23  Score=217.85  Aligned_cols=272  Identities=12%  Similarity=0.145  Sum_probs=192.5

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----c----EEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----E----AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATN   70 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~----~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~   70 (434)
                      .|.+++|||+|++|+|++     .|+.|+|||+.+.    .    .+..+...    ..+.++.|++ ++.+|+++ .++
T Consensus       485 ~V~~i~fs~dg~~latgg-----~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        485 LVCAIGFDRDGEFFATAG-----VNKKIKIFECESIIKDGRDIHYPVVELASR----SKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cEEEEEECCCCCEEEEEe-----CCCEEEEEECCcccccccccccceEEeccc----CceeeEEeccCCCCEEEEEeCCC
Confidence            378999999999999999     8999999997532    1    12222221    4455889987 46788877 578


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|++||+...........|...|.+++|+|..+..++.     ++.++.|++|++..   +..+..... ...++++.|+
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~S-----gs~Dg~v~iWd~~~---~~~~~~~~~-~~~v~~v~~~  626 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLAS-----GSDDGSVKLWSINQ---GVSIGTIKT-KANICCVQFP  626 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEE-----EcCCCEEEEEECCC---CcEEEEEec-CCCeEEEEEe
Confidence            99999998754333344566789999999854555553     46678999999987   566655543 3567788895


Q ss_pred             -CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          151 -RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       151 -~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                       ++|..+++..   .|..         ++.+++....... ....+...|..+.|. ++..|+  +++.|+.|++||++.
T Consensus       627 ~~~g~~latgs---~dg~---------I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv--s~s~D~~ikiWd~~~  691 (793)
T PLN00181        627 SESGRSLAFGS---ADHK---------VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV--SSSTDNTLKLWDLSM  691 (793)
T ss_pred             CCCCCEEEEEe---CCCe---------EEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE--EEECCCEEEEEeCCC
Confidence             4677655431   3333         3333332221111 122356799999997 677766  577899999999862


Q ss_pred             -------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-------------eCC--CceE
Q 013871          229 -------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-------------RAE--CSVT  284 (434)
Q Consensus       229 -------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-------------~~~--~~~~  284 (434)
                             ..+..+  |...++++.|+|+|++|++|+   .+|.|.+|+......+..+             ..+  .+..
T Consensus       692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs---~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~  768 (793)
T PLN00181        692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS---ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS  768 (793)
T ss_pred             CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe---CCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence                   345555  577889999999999999999   5579999998755333221             111  3566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ++|+|+|..|++|+.      |+.|+||++
T Consensus       769 v~ws~~~~~lva~~~------dG~I~i~~~  792 (793)
T PLN00181        769 VCWRGQSSTLVAANS------TGNIKILEM  792 (793)
T ss_pred             EEEcCCCCeEEEecC------CCcEEEEec
Confidence            999999999999999      999999986

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2e-23  Score=187.91  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=208.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+++.+|+.++++|.+     .|..-.||++.+|+.+..+..++   +.|.++.||.||.|||++ .++.|+||+....
T Consensus        67 vFavsl~P~~~l~aTGG-----gDD~AflW~~~~ge~~~eltgHK---DSVt~~~FshdgtlLATGdmsG~v~v~~~stg  138 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGG-----GDDLAFLWDISTGEFAGELTGHK---DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG  138 (399)
T ss_pred             eEEEEeCCCCceEEecC-----CCceEEEEEccCCcceeEecCCC---CceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence            67899999999999988     88999999999999888887754   888899999999999999 5799999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ............+.=+.|+|- ..+++.     +..++.+..|++++   .........+..+..+=.+.|+|+.++...
T Consensus       139 ~~~~~~~~e~~dieWl~WHp~-a~illA-----G~~DGsvWmw~ip~---~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy  209 (399)
T KOG0296|consen  139 GEQWKLDQEVEDIEWLKWHPR-AHILLA-----GSTDGSVWMWQIPS---QALCKVMSGHNSPCTCGEFIPDGKRILTGY  209 (399)
T ss_pred             ceEEEeecccCceEEEEeccc-ccEEEe-----ecCCCcEEEEECCC---cceeeEecCCCCCcccccccCCCceEEEEe
Confidence            432222225567888899996 555542     46678999999998   666677777888888888999999876643


Q ss_pred             EecccccCceeecce--eEEEEe-------------------eCCccee-----------ee----------ecCCCCCe
Q 013871          161 QSDVDKTNQSYYGES--KLNYLT-------------------TDGTHEG-----------LV----------PLRKEGPV  198 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~-------------------~~~~~~~-----------~v----------~l~~~~~i  198 (434)
                         .|.+.+.|.-.+  .++.+.                   +.+..++           .+          ....+..+
T Consensus       210 ---~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~  286 (399)
T KOG0296|consen  210 ---DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD  286 (399)
T ss_pred             ---cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence               355555552211  122221                   0000000           00          00112223


Q ss_pred             EEEEECcCC---CEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          199 HDVQWSYSG---SEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       199 ~~v~wspdg---~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .++.+.|..   ..+|  .|++|++|.|||+....+ +.+ |..+|..+.|-+ ..+|+++.   .+|+|+.||.++|.+
T Consensus       287 esve~~~~ss~lpL~A--~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c---~~g~v~~wDaRtG~l  360 (399)
T KOG0296|consen  287 ESVESIPSSSKLPLAA--CGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTAC---ANGKVRQWDARTGQL  360 (399)
T ss_pred             hhhhhcccccccchhh--cccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeec---cCceEEeeeccccce
Confidence            344444433   3344  599999999999965443 344 778899999999 77888887   778999999999999


Q ss_pred             EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       274 i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +..+.+|  .+..++.+|++++++|++.      ||+.+||.+.
T Consensus       361 ~~~y~GH~~~Il~f~ls~~~~~vvT~s~------D~~a~VF~v~  398 (399)
T KOG0296|consen  361 KFTYTGHQMGILDFALSPQKRLVVTVSD------DNTALVFEVP  398 (399)
T ss_pred             EEEEecCchheeEEEEcCCCcEEEEecC------CCeEEEEecC
Confidence            9999998  6667999999999999999      9999999863

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1.4e-23  Score=208.91  Aligned_cols=277  Identities=14%  Similarity=0.154  Sum_probs=211.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |.++.|||+|++|++.+     .|+.+++|++.+++  .++.+.+   |...+..++||||+++++++. |.+|+|||+.
T Consensus       162 v~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             eEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            57899999999999988     89999999997777  5555533   447888999999999999995 5699999994


Q ss_pred             CC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           79 DF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .. ........|...|.+++|+|.+ ..++     +++.++.|+||++.+   +..+..+..|...+..+.++++|..|+
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~-----Sgs~D~tvriWd~~~---~~~~~~l~~hs~~is~~~f~~d~~~l~  304 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDG-NLLV-----SGSDDGTVRIWDVRT---GECVRKLKGHSDGISGLAFSPDGNLLV  304 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCC-CEEE-----EecCCCcEEEEeccC---CeEEEeeeccCCceEEEEECCCCCEEE
Confidence            43 3345556777889999999996 6665     357788999999998   899999999999999999999999875


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcce-eeeec--CCCC-CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL--RKEG-PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL  232 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l--~~~~-~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~  232 (434)
                      ..   +.|...+.|.         +..... +...+  .... +++.++|+|+++++++  +..++.+.+||++ ...+.
T Consensus       305 s~---s~d~~i~vwd---------~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~  370 (456)
T KOG0266|consen  305 SA---SYDGTIRVWD---------LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVG  370 (456)
T ss_pred             Ec---CCCccEEEEE---------CCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCccee
Confidence            43   2355544433         223221 11111  1122 7999999999999994  6778899999997 33333


Q ss_pred             Ee--CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCcee
Q 013871          233 EL--GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       233 ~~--~~~---~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~-~~~~~wspdg~~l~tas~~prl~  304 (434)
                      .+  |..   .+.....++.|+++++++   .++.|++||..++..+..+.+|  . +..+.|+|...++++++..    
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~---~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~----  443 (456)
T KOG0266|consen  371 TYTGHSNLVRCIFSPTLSTGGKLIYSGS---EDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFE----  443 (456)
T ss_pred             eecccCCcceeEecccccCCCCeEEEEe---CCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcC----
Confidence            33  322   233445688999999999   6679999999999888888777  2 2349999999999999831    


Q ss_pred             eCCcEEEEeecC
Q 013871          305 IDNGIKIFHHNG  316 (434)
Q Consensus       305 ~D~~i~iw~~~g  316 (434)
                      .|+.+++|.+..
T Consensus       444 ~d~~~~~w~~~~  455 (456)
T KOG0266|consen  444 GDGLIRLWKYDF  455 (456)
T ss_pred             CCceEEEecCCC
Confidence            189999998764

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=1.8e-23  Score=203.32  Aligned_cols=278  Identities=13%  Similarity=0.172  Sum_probs=221.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++||.|...|++..      .+.++||+..++++++++...     -+.+..|-|.+++++.+. +|++.+||+...
T Consensus       376 VRsl~vS~d~~~~~Sga------~~SikiWn~~t~kciRTi~~~-----y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~  444 (888)
T KOG0306|consen  376 VRSLCVSSDSILLASGA------GESIKIWNRDTLKCIRTITCG-----YILASKFVPGDRYIVLGTKNGELQVFDLASA  444 (888)
T ss_pred             eeEEEeecCceeeeecC------CCcEEEEEccCcceeEEeccc-----cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence            78899999998888765      468999999999999998764     333788999999999996 579999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeee-------ecccceeEEEECC
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRS-------FFRCSTVQLNWNR  151 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~-------~~~~~~~~~~ws~  151 (434)
                      ......+-|...|.+++.+|++...+.      ++.+.+|++|+...-.  ++..-..++       -...++.++..||
T Consensus       445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT------~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp  518 (888)
T KOG0306|consen  445 SLVETIRAHDGAIWSISLSPDNKGFVT------GSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP  518 (888)
T ss_pred             hhhhhhhccccceeeeeecCCCCceEE------ecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence            666666777788999999999655553      4677899999864211  111111011       1346788999999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cce
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP  230 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~  230 (434)
                      ||++|++..   .|.+.+.||-.+--+++.+.|.         .-||.++..|||++.++  +|+-|..|++|-+. +..
T Consensus       519 dgk~LaVsL---LdnTVkVyflDtlKFflsLYGH---------kLPV~smDIS~DSkliv--TgSADKnVKiWGLdFGDC  584 (888)
T KOG0306|consen  519 DGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGH---------KLPVLSMDISPDSKLIV--TGSADKNVKIWGLDFGDC  584 (888)
T ss_pred             CCcEEEEEe---ccCeEEEEEecceeeeeeeccc---------ccceeEEeccCCcCeEE--eccCCCceEEeccccchh
Confidence            999987753   6777776665544445555553         67999999999999888  78889999999886 333


Q ss_pred             eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013871          231 ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       231 ~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                      -.++  |...+.++.|-|+..++.++|   .+|.|+-||-++.+.+.++.+|  .+.+++-+|+|.|+++++.      |
T Consensus       585 HKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D  655 (888)
T KOG0306|consen  585 HKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------D  655 (888)
T ss_pred             hhhhhcccCceeEEEEcccceeEEEec---CcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------C
Confidence            3344  789999999999999999999   6679999999999999999887  6778999999999999999      9


Q ss_pred             CcEEEEeecCcee
Q 013871          307 NGIKIFHHNGSLF  319 (434)
Q Consensus       307 ~~i~iw~~~g~~~  319 (434)
                      .+|++|.-+...+
T Consensus       656 ~sIRlwE~tde~~  668 (888)
T KOG0306|consen  656 KSIRLWERTDEIL  668 (888)
T ss_pred             ceeEeeeccCcce
Confidence            9999999877654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=1.9e-22  Score=189.22  Aligned_cols=278  Identities=15%  Similarity=0.236  Sum_probs=186.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------------------------------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM----------------------------------   47 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~----------------------------------   47 (434)
                      |.+|+||||++.++|.+     .|++++|||+.+.++++++.....                                  
T Consensus       238 IfalsWsPDs~~~~T~S-----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  238 IFALSWSPDSTQFLTVS-----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             EEEEEECCCCceEEEec-----CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence            68999999999999999     899999999999887776653211                                  


Q ss_pred             ------CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013871           48 ------TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS  119 (434)
Q Consensus        48 ------~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~  119 (434)
                            |...++++.-++|+++|.++ .|+.|.-|+......... -+.|...|..++.+-. +.++.+      +.+.+
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~-~~~~t~------g~Dd~  385 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASES-GELFTI------GWDDT  385 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCC-CcEEEE------ecCCe
Confidence                  34567788899999999988 578999999876432111 1334445666655542 122211      11122


Q ss_pred             EEEEEcCCCCC---------CCce-------------------eeee-e-------cccceeEEEECCCCCeEEEEEEec
Q 013871          120 VQIYACGKDLQ---------SQPL-------------------ARRS-F-------FRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus       120 v~i~~~~~~~~---------~~~i-------------------~~~~-~-------~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                      +++.++....-         .||.                   ..+. +       ..-....++.+|+++.+++..   
T Consensus       386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG---  462 (603)
T KOG0318|consen  386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGG---  462 (603)
T ss_pred             EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEec---
Confidence            22222210000         0000                   0000 0       112234566778888776642   


Q ss_pred             ccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE----EeCCc
Q 013871          164 VDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSG  237 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~----~~~~~  237 (434)
                      .|       |  ++|...+.+.  .+..+.+++.++|.++++|||+.+||  +|+..+++.+||......+    .||+.
T Consensus       463 ~D-------g--kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla--~~Da~rkvv~yd~~s~~~~~~~w~FHta  531 (603)
T KOG0318|consen  463 QD-------G--KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA--AGDASRKVVLYDVASREVKTNRWAFHTA  531 (603)
T ss_pred             cc-------c--eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE--EeccCCcEEEEEcccCceecceeeeeee
Confidence            11       2  2444444443  34445667789999999999999999  5777889999999765543    46999


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+++++|||+..++|+|+   +|-.|.||+++.- +.+....+|  .+..+.|--+ ..+++++.      |..||+|++
T Consensus       532 kI~~~aWsP~n~~vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~------Da~iK~W~v  601 (603)
T KOG0318|consen  532 KINCVAWSPNNKLVATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQ------DANIKVWNV  601 (603)
T ss_pred             eEEEEEeCCCceEEEecc---ccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccC------cceeEEecc
Confidence            999999999999999999   5559999999865 334444555  6777999755 67788888      999999997


Q ss_pred             c
Q 013871          315 N  315 (434)
Q Consensus       315 ~  315 (434)
                      +
T Consensus       602 ~  602 (603)
T KOG0318|consen  602 T  602 (603)
T ss_pred             c
Confidence            4

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.92  E-value=1.4e-24  Score=197.75  Aligned_cols=272  Identities=12%  Similarity=0.211  Sum_probs=203.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |..|.|+|+|+.|+|++     ..+.+.+|+..+-.- ..+.+  .|...|+++.||++|.+++++. ++.|++|+.+-.
T Consensus        99 V~~v~WtPeGRRLltgs-----~SGEFtLWNg~~fnF-EtilQ--aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn  170 (464)
T KOG0284|consen   99 VNVVRWTPEGRRLLTGS-----QSGEFTLWNGTSFNF-ETILQ--AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN  170 (464)
T ss_pred             eeeEEEcCCCceeEeec-----ccccEEEecCceeeH-HHHhh--hhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence            67799999999999998     778999999632211 11112  2447899999999999999995 569999997653


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+.+.|++++|||....++.+      ..+++|+||+...   ..+...+..|..++.++.|+|.-..|+   
T Consensus       171 nVk~~~ahh~eaIRdlafSpnDskF~t~------SdDg~ikiWdf~~---~kee~vL~GHgwdVksvdWHP~kgLia---  238 (464)
T KOG0284|consen  171 NVKIIQAHHAEAIRDLAFSPNDSKFLTC------SDDGTIKIWDFRM---PKEERVLRGHGWDVKSVDWHPTKGLIA---  238 (464)
T ss_pred             hhHHhhHhhhhhhheeccCCCCceeEEe------cCCCeEEEEeccC---CchhheeccCCCCcceeccCCccceeE---
Confidence            3322233345789999999974344432      4568999999987   667777799999999999999765433   


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~  236 (434)
                      +...|...+.|         +...+ .|..++. +...|..+.|+|++++|+  +++.|..+++||++ -+.++.+  |+
T Consensus       239 sgskDnlVKlW---------DprSg-~cl~tlh~HKntVl~~~f~~n~N~Ll--t~skD~~~kv~DiR~mkEl~~~r~Hk  306 (464)
T KOG0284|consen  239 SGSKDNLVKLW---------DPRSG-SCLATLHGHKNTVLAVKFNPNGNWLL--TGSKDQSCKVFDIRTMKELFTYRGHK  306 (464)
T ss_pred             EccCCceeEee---------cCCCc-chhhhhhhccceEEEEEEcCCCCeeE--EccCCceEEEEehhHhHHHHHhhcch
Confidence            23344444433         33333 4444443 478999999999999988  78899999999998 3444444  88


Q ss_pred             cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          237 GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ..++++.|+|--. +|.+||   .+|.|.+|.+...+.+..+ .+|  .+.+++|+|=|..|++|+.      |+++++|
T Consensus       307 kdv~~~~WhP~~~~lftsgg---~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn------d~t~rfw  377 (464)
T KOG0284|consen  307 KDVTSLTWHPLNESLFTSGG---SDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN------DRTVRFW  377 (464)
T ss_pred             hhheeeccccccccceeecc---CCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC------Ccceeee
Confidence            9999999999665 666666   6689999998854444443 334  6778999999999999998      9999999


Q ss_pred             ee
Q 013871          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      .-
T Consensus       378 ~r  379 (464)
T KOG0284|consen  378 TR  379 (464)
T ss_pred             cc
Confidence            85

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-22  Score=174.34  Aligned_cols=279  Identities=15%  Similarity=0.215  Sum_probs=206.1

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |+.++|+|- |..|+|++     .|+.|+||++..+.. ...-.....|+..++.++|||.|+|||++ .|.++.||.-.
T Consensus        17 ~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   17 VWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             EEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            688999998 99999999     899999999875432 11111222466889999999999999998 57899999876


Q ss_pred             C--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           79 D--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        79 ~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      +  |+.......|...|++++||++ +.++|....+     ..|-||.+....+-..+..++.|..++..+.|+|.-.. 
T Consensus        92 ~~efecv~~lEGHEnEVK~Vaws~s-G~~LATCSRD-----KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl-  164 (312)
T KOG0645|consen   92 DGEFECVATLEGHENEVKCVAWSAS-GNYLATCSRD-----KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL-  164 (312)
T ss_pred             CCceeEEeeeeccccceeEEEEcCC-CCEEEEeeCC-----CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce-
Confidence            4  3443444556667999999999 7888865544     47999999865556777888999999999999997654 


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG  235 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~  235 (434)
                        +++...|.+.+.|.       -...+..++..+|+ ++..|.+++|+|+|.+++  +++.|+.+.||-..+. +..+|
T Consensus       165 --L~S~SYDnTIk~~~-------~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~--s~sdD~tv~Iw~~~~~-~~~~~  232 (312)
T KOG0645|consen  165 --LFSCSYDNTIKVYR-------DEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV--SCSDDGTVSIWRLYTD-LSGMH  232 (312)
T ss_pred             --eEEeccCCeEEEEe-------ecCCCCeeEEEEecCccceEEEEEecCCCceEE--EecCCcceEeeeeccC-cchhc
Confidence              33444677777553       22234445555655 366999999999999998  6788999999976532 22346


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE-EeeCC--CceEEEECCC-CCEEEEEEcCCceee
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG-TTRAE--CSVTSEWSPD-GRYFMTATTAPRLQI  305 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~-~~~~~--~~~~~~wspd-g~~l~tas~~prl~~  305 (434)
                      ...+..+.|.  ...||+++   .++.|.+|-....      +++. ...+|  .+..++|.|. ...|++++.      
T Consensus       233 sr~~Y~v~W~--~~~IaS~g---gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D------  301 (312)
T KOG0645|consen  233 SRALYDVPWD--NGVIASGG---GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD------  301 (312)
T ss_pred             ccceEeeeec--ccceEecc---CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC------
Confidence            7888889998  45788887   4468999976542      2222 22233  6677999995 667788888      


Q ss_pred             CCcEEEEeec
Q 013871          306 DNGIKIFHHN  315 (434)
Q Consensus       306 D~~i~iw~~~  315 (434)
                      ||.|++|.+.
T Consensus       302 DG~v~~W~l~  311 (312)
T KOG0645|consen  302 DGIVNFWELE  311 (312)
T ss_pred             CceEEEEEec
Confidence            9999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.92  E-value=4e-22  Score=174.72  Aligned_cols=265  Identities=14%  Similarity=0.132  Sum_probs=204.8

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.++.|++|+++|++++ |+.+.|||.-+.++.....+...-|..+++||. +..+|+     +|.+..+.||++.
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS-g~~VAc-----GGLdN~Csiy~ls  127 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVAC-----GGLDNKCSIYPLS  127 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC-CCeEEe-----cCcCceeEEEecc
Confidence            447788999999999999985 689999999887776777788888999999999 677875     6888999999998


Q ss_pred             CCCC---CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE
Q 013871          127 KDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       127 ~~~~---~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w  203 (434)
                      ....   ....+.+..|.....+..|-+|+.. +  +.+ .|.         +.-++++..+.....-..|.+.|.++++
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~i-l--T~S-GD~---------TCalWDie~g~~~~~f~GH~gDV~slsl  194 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHI-L--TGS-GDM---------TCALWDIETGQQTQVFHGHTGDVMSLSL  194 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCce-E--ecC-CCc---------eEEEEEcccceEEEEecCCcccEEEEec
Confidence            5311   1233455667777778888886653 2  211 333         3334444444333333456899999999


Q ss_pred             Cc-CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          204 SY-SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       204 sp-dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      +| +++.|+  +|.-|+..+|||++. ..+..|  |...||++.|.|+|.-+++|+   .|++.++||++....+..+..
T Consensus       195 ~p~~~ntFv--Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  195 SPSDGNTFV--SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             CCCCCCeEE--ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEeecCCcEEeeecc
Confidence            99 899998  788899999999973 334444  889999999999999999988   668999999999888888876


Q ss_pred             C----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee--eeeecccceeeEEEcCCCCCCCC
Q 013871          280 E----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~--~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .    .++.++||-.||+|+.+..      |.++.+||. .|+.+  ...|..++.++.-.|++.-+.+.
T Consensus       270 ~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg  333 (343)
T KOG0286|consen  270 DSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG  333 (343)
T ss_pred             CcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence            5    5667999999999999988      999999997 44433  33466789999999988665554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=3e-23  Score=182.42  Aligned_cols=259  Identities=10%  Similarity=0.207  Sum_probs=194.7

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      .|..+.|+|+|.+|+|.+     .|..|.+|++.... ....+.+   |...+..+.|++|++.+++++ |.+|+.||+.
T Consensus        49 eI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~  120 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGTDKTVRGWDAE  120 (338)
T ss_pred             eEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence            478999999999999988     89999999975332 2233333   457788999999999998885 5699999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ........+.|..-|..+.  |.. ++.+.+    ++..+++++|||+..   ..                         
T Consensus       121 tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~----SgsdD~t~kl~D~R~---k~-------------------------  166 (338)
T KOG0265|consen  121 TGKRIRKHKGHTSFVNSLD--PSRRGPQLVC----SGSDDGTLKLWDIRK---KE-------------------------  166 (338)
T ss_pred             cceeeehhccccceeeecC--ccccCCeEEE----ecCCCceEEEEeecc---cc-------------------------
Confidence            8766555666666666554  332 222221    334456677777644   11                         


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--  234 (434)
                                                    ...+++...+++++.|..++.+..  +|..|+.|++||++. ..++.+  
T Consensus       167 ------------------------------~~~t~~~kyqltAv~f~d~s~qv~--sggIdn~ikvWd~r~~d~~~~lsG  214 (338)
T KOG0265|consen  167 ------------------------------AIKTFENKYQLTAVGFKDTSDQVI--SGGIDNDIKVWDLRKNDGLYTLSG  214 (338)
T ss_pred             ------------------------------hhhccccceeEEEEEeccccccee--eccccCceeeeccccCcceEEeec
Confidence                                          111111245678899998888887  699999999999953 334444  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC----CEEEEEeeCC------CceEEEECCCCCEEEEEEcCCcee
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD----GKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~----~~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      |..+|+.+..||+|.++++-+.+   .++++||++-    .+++..+.++      +...|+|||+++++..++.     
T Consensus       215 h~DtIt~lsls~~gs~llsnsMd---~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-----  286 (338)
T KOG0265|consen  215 HADTITGLSLSRYGSFLLSNSMD---NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-----  286 (338)
T ss_pred             ccCceeeEEeccCCCcccccccc---ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-----
Confidence            88999999999999999998845   5999999874    3668888775      4455999999999999998     


Q ss_pred             eCCcEEEEeecC-ceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          305 IDNGIKIFHHNG-SLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       305 ~D~~i~iw~~~g-~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                       |..+.+||..+ .++|..  +...+.++.|.|..+.+++.
T Consensus       287 -dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~  326 (338)
T KOG0265|consen  287 -DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC  326 (338)
T ss_pred             -cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence             99999999988 566765  56789999999999888775

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.6e-22  Score=194.81  Aligned_cols=274  Identities=16%  Similarity=0.194  Sum_probs=204.4

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK   82 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~   82 (434)
                      .|+||. .+.|+.+.      ...|.+|+..+|+....+...   .+.+.++.|+++|.+||.+ .++.|.|||......
T Consensus       182 lldWss-~n~laVal------g~~vylW~~~s~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL------GQSVYLWSASSGSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK  251 (484)
T ss_pred             Hhhccc-CCeEEEEe------cceEEEEecCCCceEEeEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence            467884 45555544      468999999999865555443   2778899999999999999 578999999877655


Q ss_pred             ceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEEEEE
Q 013871           83 GILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 ~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ...... |...|.+++|...   .+.     .+...+.|..+++..   .+.+.. ...|..++|.++|++||.++   +
T Consensus       252 ~~~~~~~h~~rvg~laW~~~---~ls-----sGsr~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~l---A  317 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNSS---VLS-----SGSRDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQL---A  317 (484)
T ss_pred             cccccCCcCceeEEEeccCc---eEE-----EecCCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCee---c
Confidence            455555 7778999999843   222     345667888899876   333333 77899999999999999985   4


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe-CCc
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL-GSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~~  237 (434)
                      +...|.....|.         .........-.++.+.|..++|+| ....||+-.|..|+.|++||.... .+... ...
T Consensus       318 SGgnDN~~~Iwd---------~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs  388 (484)
T KOG0305|consen  318 SGGNDNVVFIWD---------GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS  388 (484)
T ss_pred             cCCCccceEecc---------CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence            444454443332         222212222234588999999999 556777766678889999999644 44444 577


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .|..|.|||..+-|+++ .|..+..|.||+..+.+.+..+.+|  .+..++|||||++|++|+.      |.++++|++-
T Consensus       389 QVcsL~Wsk~~kEi~st-hG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f  461 (484)
T KOG0305|consen  389 QVCSLIWSKKYKELLST-HGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLF  461 (484)
T ss_pred             ceeeEEEcCCCCEEEEe-cCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEecccc
Confidence            89999999999877654 2334569999999999999999888  5667999999999999999      9999999986


Q ss_pred             Cc
Q 013871          316 GS  317 (434)
Q Consensus       316 g~  317 (434)
                      +.
T Consensus       462 ~~  463 (484)
T KOG0305|consen  462 DE  463 (484)
T ss_pred             CC
Confidence            64

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=5.7e-22  Score=171.24  Aligned_cols=278  Identities=13%  Similarity=0.192  Sum_probs=194.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEe-cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~-~~~~i~v~~~~~   79 (434)
                      |.+++|.-+|++|++.+     .|+.+.||++.-++.+....... |...+-.+.|.|- ...|++. ++..|++||...
T Consensus        23 v~Sv~wn~~g~~lasgs-----~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   23 VHSVAWNCDGTKLASGS-----FDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             ceEEEEcccCceeeecc-----cCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            57899999999999988     89999999998776555544433 3456667889873 3455555 677999999877


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ...........++ ..+.|+|+ +.++++     .+.+..|...+..+   .+..... -++..+..+.|+.++. +.++
T Consensus        97 ~k~~~~i~~~~en-i~i~wsp~-g~~~~~-----~~kdD~it~id~r~---~~~~~~~-~~~~e~ne~~w~~~nd-~Ffl  164 (313)
T KOG1407|consen   97 GKCTARIETKGEN-INITWSPD-GEYIAV-----GNKDDRITFIDART---YKIVNEE-QFKFEVNEISWNNSND-LFFL  164 (313)
T ss_pred             CcEEEEeeccCcc-eEEEEcCC-CCEEEE-----ecCcccEEEEEecc---cceeehh-cccceeeeeeecCCCC-EEEE
Confidence            4432222333333 45789999 455544     24556778888766   3333333 3445677889996555 4455


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---cceeEEeC
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELG  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~~~~~  235 (434)
                      +..-         |  .+..|.-... +....+. +.....++.|+|+|++||  +|+.|+.+.|||+.   |.-.+.-.
T Consensus       165 t~Gl---------G--~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA--~GsADAlvSLWD~~ELiC~R~isRl  230 (313)
T KOG1407|consen  165 TNGL---------G--CVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFA--TGSADALVSLWDVDELICERCISRL  230 (313)
T ss_pred             ecCC---------c--eEEEEecccc-ccccccccCCcceEEEEECCCCceEe--eccccceeeccChhHhhhheeeccc
Confidence            4321         1  2333332211 1111221 356778999999999999  59999999999985   44444457


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCce---eeCCcEEE
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRL---QIDNGIKI  311 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl---~~D~~i~i  311 (434)
                      .-+|.+|.||-||++||+|+   .|.-|.|-++++|..+..++....+. ++|+|....|+.|...+.-   |-.+++||
T Consensus       231 dwpVRTlSFS~dg~~lASaS---EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKi  307 (313)
T KOG1407|consen  231 DWPVRTLSFSHDGRMLASAS---EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKI  307 (313)
T ss_pred             cCceEEEEeccCcceeeccC---ccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEE
Confidence            88999999999999999999   55699999999999999988775554 9999999999999875421   22267888


Q ss_pred             Eee
Q 013871          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      |-+
T Consensus       308 FG~  310 (313)
T KOG1407|consen  308 FGL  310 (313)
T ss_pred             ecC
Confidence            754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=5.5e-23  Score=177.99  Aligned_cols=285  Identities=15%  Similarity=0.242  Sum_probs=217.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      ++.|.|..+|..|.+++     .|....||-..+|+.+.++.++..  ..| |+...-+.++|++++ |+++++||+...
T Consensus        13 lTqiKyN~eGDLlFsca-----KD~~~~vw~s~nGerlGty~GHtG--avW-~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen   13 LTQIKYNREGDLLFSCA-----KDSTPTVWYSLNGERLGTYDGHTG--AVW-CCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             cceEEecCCCcEEEEec-----CCCCceEEEecCCceeeeecCCCc--eEE-EEEecCCcceeeeccccceeEEEEcCCC
Confidence            56789999999999999     899999999999999999998754  777 999999999999994 679999999986


Q ss_pred             CCceeeeeecC-CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCe
Q 013871           81 PKGILYRLRVP-GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ..  ....... .|+.+.|+++ +.++++......+..+.|.+++++...    ...++..+.-.....+.+-|+|.|+.
T Consensus        85 k~--la~~k~~~~Vk~~~F~~~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~  161 (327)
T KOG0643|consen   85 KQ--LATWKTNSPVKRVDFSFG-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET  161 (327)
T ss_pred             cE--EEEeecCCeeEEEeeccC-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence            53  3344432 5889999998 566666677778899999999998532    24556666666677788999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~  234 (434)
                      |+..   +.|.....|.-.++..+++....        +...|++++++||..+|+  +++.|.+.++||.+. ..+.++
T Consensus       162 ii~G---he~G~is~~da~~g~~~v~s~~~--------h~~~Ind~q~s~d~T~Fi--T~s~Dttakl~D~~tl~v~Kty  228 (327)
T KOG0643|consen  162 IIAG---HEDGSISIYDARTGKELVDSDEE--------HSSKINDLQFSRDRTYFI--TGSKDTTAKLVDVRTLEVLKTY  228 (327)
T ss_pred             EEEe---cCCCcEEEEEcccCceeeechhh--------hccccccccccCCcceEE--ecccCccceeeeccceeeEEEe
Confidence            7653   34555555544443333333222        256899999999999998  799999999999975 445555


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeE------------EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDM------------AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i------------~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                       ...|+|+.+++|.-.+++++|..+ ...|            ++|++--.+.+...++|  .+..++++|||...++++.
T Consensus       229 ~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGE  307 (327)
T KOG0643|consen  229 TTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGE  307 (327)
T ss_pred             eecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCC
Confidence             578999999999999988887432 1112            22333233466777777  5556999999999999999


Q ss_pred             CCceeeCCcEEEEeecCc
Q 013871          300 APRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       300 ~prl~~D~~i~iw~~~g~  317 (434)
                            |+.|+|.+++..
T Consensus       308 ------DG~VR~h~Fd~~  319 (327)
T KOG0643|consen  308 ------DGYVRLHHFDSN  319 (327)
T ss_pred             ------CceEEEEEeccc
Confidence                  999999987654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.91  E-value=2.4e-23  Score=193.55  Aligned_cols=273  Identities=15%  Similarity=0.191  Sum_probs=202.2

Q ss_pred             CcceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013871            1 MLLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~   77 (434)
                      .|+++.|.| .|.+|++++     .|+.|+||++-. +.++++|.+++   ..+..+.||.+|..+.++ .|..|++||+
T Consensus       216 gvsai~~fp~~~hLlLS~g-----mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt  287 (503)
T KOG0282|consen  216 GVSAIQWFPKKGHLLLSGG-----MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFNNCGTSFLSASFDRFLKLWDT  287 (503)
T ss_pred             ccchhhhccceeeEEEecC-----CCceEEEEEEecCcceehhhhcch---hhhhhhhccccCCeeeeeecceeeeeecc
Confidence            478999999 889999988     899999999976 89999999875   788899999999877766 6889999999


Q ss_pred             CCCCCceeeeeecC-CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           78 TDFPKGILYRLRVP-GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        78 ~~~~~~~~~~~~~~-~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ..+.  ...+++.. -+.++.+.|++.+.+.+     ++.++.|+.||+.+   +..+....-+-..+..+.|-++|.+.
T Consensus       288 ETG~--~~~~f~~~~~~~cvkf~pd~~n~fl~-----G~sd~ki~~wDiRs---~kvvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  288 ETGQ--VLSRFHLDKVPTCVKFHPDNQNIFLV-----GGSDKKIRQWDIRS---GKVVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             ccce--EEEEEecCCCceeeecCCCCCcEEEE-----ecCCCcEEEEeccc---hHHHHHHHhhhhheeeeEEccCCceE
Confidence            8865  33455554 36788999996344332     57788999999988   66666666666777888999999985


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc------ce
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC------RP  230 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~------~~  230 (434)
                      +..   ..|++.+.|       ..++.-.....+. ...-...++..+|+++.|+  ..+|++.+.+|.+..      ..
T Consensus       358 iss---SDdks~riW-------e~~~~v~ik~i~~-~~~hsmP~~~~~P~~~~~~--aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  358 ISS---SDDKSVRIW-------ENRIPVPIKNIAD-PEMHTMPCLTLHPNGKWFA--AQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             eee---ccCccEEEE-------EcCCCccchhhcc-hhhccCcceecCCCCCeeh--hhccCceEEEEecccccccCHhh
Confidence            432   244444433       2211111000000 0122345789999999999  689999999997531      12


Q ss_pred             eEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EEEEEcCCceee
Q 013871          231 ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FMTATTAPRLQI  305 (434)
Q Consensus       231 ~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~tas~~prl~~  305 (434)
                      .+.-|  .+.-..+.|||||++|++|.   .+|.+.+||.++-+++..+.+|  .++.+.|+|.... ++|++-      
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGd---sdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w------  495 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGD---SDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW------  495 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeec---CCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc------
Confidence            22223  45556799999999999988   6789999999999999999988  3344999998665 555554      


Q ss_pred             CCcEEEEe
Q 013871          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      ||.|+||+
T Consensus       496 ~G~Ikiwd  503 (503)
T KOG0282|consen  496 DGLIKIWD  503 (503)
T ss_pred             CceeEecC
Confidence            99999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.3e-22  Score=180.00  Aligned_cols=273  Identities=15%  Similarity=0.186  Sum_probs=213.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |+.+-|.|+-..+++++     +|.+|++||..+|++++.+.++.   ..+..+.|+..|+++++++.+ .+++||...+
T Consensus       111 vt~v~~hp~~~~v~~as-----~d~tikv~D~~tg~~e~~LrGHt---~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  111 VTRVIFHPSEALVVSAS-----EDATIKVFDTETGELERSLRGHT---DSVFDISFDASGKYLATCSSDLSAKLWDFDTF  182 (406)
T ss_pred             eeeeeeccCceEEEEec-----CCceEEEEEccchhhhhhhhccc---cceeEEEEecCccEEEecCCccchhheeHHHH
Confidence            56788999999999988     89999999999999988877654   557799999999999999766 5999998763


Q ss_pred             -CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           81 -PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 -~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                       +.......+..+|.++.+=|.++.++.      .+.+.+|+.|++.+   +-.+.+...+..-+..+.-+.||..   +
T Consensus       183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS------~srD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti---~  250 (406)
T KOG0295|consen  183 FRCIKSLIGHEHGVSSVFFLPLGDHILS------CSRDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTI---I  250 (406)
T ss_pred             HHHHHHhcCcccceeeEEEEecCCeeee------cccccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeE---E
Confidence             332333445668999999998544433      35567899999998   7888888888877778888889875   3


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCC--------------EEEEEEccCCCeEEEE
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGS--------------EFAVVYGFMPASATIF  224 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~--------------~~av~~g~~~~~v~l~  224 (434)
                      ++.+.|.+...       |.+.   ..++...+ +++-+|..++|.|...              .+.+ +++.|++|++|
T Consensus       251 As~s~dqtl~v-------W~~~---t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~-s~SrDktIk~w  319 (406)
T KOG0295|consen  251 ASCSNDQTLRV-------WVVA---TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG-SGSRDKTIKIW  319 (406)
T ss_pred             EecCCCceEEE-------EEec---cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE-eecccceEEEE
Confidence            44445555543       3332   12233322 3477888999876421              3443 58899999999


Q ss_pred             ecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          225 NKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       225 d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      |+. +..++++  |..-|..++|+|.|+||+++.   .|+++++||+++++++....+|  -++.++|.-+-.|++||+-
T Consensus       320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca---DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV  396 (406)
T KOG0295|consen  320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA---DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV  396 (406)
T ss_pred             eccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc
Confidence            995 6677777  788899999999999999998   6679999999999999998876  5667999999999999998


Q ss_pred             CCceeeCCcEEEEee
Q 013871          300 APRLQIDNGIKIFHH  314 (434)
Q Consensus       300 ~prl~~D~~i~iw~~  314 (434)
                            |..+++|..
T Consensus       397 ------dqt~KvwEc  405 (406)
T KOG0295|consen  397 ------DQTVKVWEC  405 (406)
T ss_pred             ------cceeeeeec
Confidence                  999999964

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-20  Score=166.87  Aligned_cols=272  Identities=13%  Similarity=0.158  Sum_probs=195.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~   78 (434)
                      |.+|.||++|.+|++.+     +|..|+|||..+|+.++++..+.   .++..+.|......+..++   |++|+.-++.
T Consensus        17 i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~ti~skk---yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~   88 (311)
T KOG1446|consen   17 INSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVKTINSKK---YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH   88 (311)
T ss_pred             eeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceeeEeeccc---ccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence            67999999999999988     88999999999999999988876   5666889988777666553   5799999988


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +..-......|...|.+++.+|.++..+.      ...+.+|++|++..   ..+...+..  ......++.|+|-.+++
T Consensus        89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS------~S~D~tvrLWDlR~---~~cqg~l~~--~~~pi~AfDp~GLifA~  157 (311)
T KOG1446|consen   89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLS------SSLDKTVRLWDLRV---KKCQGLLNL--SGRPIAAFDPEGLIFAL  157 (311)
T ss_pred             cCceEEEcCCCCceEEEEEecCCCCeEEe------cccCCeEEeeEecC---CCCceEEec--CCCcceeECCCCcEEEE
Confidence            75544455677788999999998765553      46677999999975   233222222  23335678999876555


Q ss_pred             EEEecccccCceeecceeEEEEeeCCc-ceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~  234 (434)
                      ...+   ..+       .||.+...+. --..+.+.  .......+.|||||+.+.+.  .+.+.+.+.|. ++....++
T Consensus       158 ~~~~---~~I-------kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls--T~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  158 ANGS---ELI-------KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS--TNASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             ecCC---CeE-------EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE--eCCCcEEEEEccCCcEeeeE
Confidence            4211   122       3555544322 11222232  35678899999999999974  45668889887 55555555


Q ss_pred             --CCcC---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeC
Q 013871          235 --GSGP---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 --~~~~---~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                        +...   --...|+|||++++++.   .+|+|.+|++++++.+..+.+.   .+.++.|+|.-..+++|++       
T Consensus       226 s~~~~~~~~~~~a~ftPds~Fvl~gs---~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-------  295 (311)
T KOG1446|consen  226 SGYPNAGNLPLSATFTPDSKFVLSGS---DDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-------  295 (311)
T ss_pred             eeccCCCCcceeEEECCCCcEEEEec---CCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------
Confidence              2211   14689999999999887   6689999999999999998884   4445899998766666654       


Q ss_pred             CcEEEEeec
Q 013871          307 NGIKIFHHN  315 (434)
Q Consensus       307 ~~i~iw~~~  315 (434)
                       .+-+|-.+
T Consensus       296 -~l~fw~p~  303 (311)
T KOG1446|consen  296 -NLVFWLPD  303 (311)
T ss_pred             -eEEEEecc
Confidence             56666543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.90  E-value=1.9e-22  Score=188.64  Aligned_cols=276  Identities=16%  Similarity=0.258  Sum_probs=187.9

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecC-cCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKN-MTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      +|.+|+|-|.|-.|+|++     .|..|++||...-.. .+.|.+-. .....+.+++||+.|..|+..+ ..+.+|+|-
T Consensus       169 ~Vsal~~Dp~GaR~~sGs-----~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DR  243 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGS-----LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDR  243 (641)
T ss_pred             EEEEeeecCCCceeeecc-----ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEcc
Confidence            589999999999999988     899999999864322 22232211 1124566899999887776664 459999997


Q ss_pred             CCCCCcee------------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           78 TDFPKGIL------------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        78 ~~~~~~~~------------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ..+.....            .+.|+..+++-+|+|.....+..     .+.++++|||++.+.   .  .          
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT-----~s~DgtlRiWdv~~~---k--~----------  303 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT-----CSYDGTLRIWDVNNT---K--S----------  303 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEE-----ecCCCcEEEEecCCc---h--h----------
Confidence            66543221            22344456666666664333321     244566677766541   0  0          


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                               .+-+                     +......      .+.-++..++|+|||+.||  +|..||.|.+|+
T Consensus       304 ---------q~qV---------------------ik~k~~~------g~Rv~~tsC~~nrdg~~iA--agc~DGSIQ~W~  345 (641)
T KOG0772|consen  304 ---------QLQV---------------------IKTKPAG------GKRVPVTSCAWNRDGKLIA--AGCLDGSIQIWD  345 (641)
T ss_pred             ---------heeE---------------------EeeccCC------CcccCceeeecCCCcchhh--hcccCCceeeee
Confidence                     0000                     0000000      0134778999999999988  688999999999


Q ss_pred             ccc---ce---eEEeCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC----CCceEEEECCCCC
Q 013871          226 KKC---RP---ILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA----ECSVTSEWSPDGR  292 (434)
Q Consensus       226 ~~~---~~---~~~~~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~----~~~~~~~wspdg~  292 (434)
                      ...   ++   +.+.|..  .+++|.||+||++|++-|+|+   .+++||+++. +.+....+    ...+.|+||||.+
T Consensus       346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k  422 (641)
T KOG0772|consen  346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK  422 (641)
T ss_pred             cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence            742   22   3344654  899999999999999998665   9999999876 44544433    2556699999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc--cceeeEEEcCCCCCCCC
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~--~~~~~~w~p~~~~~~~~  342 (434)
                      .|+||++.|+-.-.+.+.+|+-. =..+++..+.  .+-.+.|+|.-.-+|..
T Consensus       423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g  475 (641)
T KOG0772|consen  423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG  475 (641)
T ss_pred             EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence            99999999887667778888863 3456666554  57788999987766654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=179.82  Aligned_cols=275  Identities=16%  Similarity=0.196  Sum_probs=215.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec-----CcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK-----NMTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~-----~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      +-|..|||||+||++.+     -|+-|-|||.-+|+....+...     -+....+.|+.||.|...+|+++ ||.|+||
T Consensus       216 ~EcA~FSPDgqyLvsgS-----vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  216 VECARFSPDGQYLVSGS-----VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             hhheeeCCCCceEeecc-----ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45789999999999988     8999999999999764332211     11236678999999999999995 7899999


Q ss_pred             eCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           76 DTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        76 ~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .+......... +-|..+|.++.||.++...+.      .+.+.+++|.-+.+   ++.+.....|...+....|.++|.
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS------~sfD~tvRiHGlKS---GK~LKEfrGHsSyvn~a~ft~dG~  361 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS------ASFDQTVRIHGLKS---GKCLKEFRGHSSYVNEATFTDDGH  361 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhhc------ccccceEEEecccc---chhHHHhcCccccccceEEcCCCC
Confidence            99886654333 366789999999999655443      46677899999988   788888888888888999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeee---ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~  231 (434)
                      +|+..   ..|.+.+.|.+.++          +|..   ++..+.+|+++-.-|....-.++ +...+++.+.++.++.+
T Consensus       362 ~iisa---SsDgtvkvW~~Ktt----------eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~qGQvV  427 (508)
T KOG0275|consen  362 HIISA---SSDGTVKVWHGKTT----------ECLSTFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQGQVV  427 (508)
T ss_pred             eEEEe---cCCccEEEecCcch----------hhhhhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEeccceEE
Confidence            97643   35677777765443          2222   23346789999888866544433 45567999999999999


Q ss_pred             EEeC-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871          232 LELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       232 ~~~~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      .+|.     .+..-++..||.|.++.+.|   .|+.++.|.+.+|++-.++.-|  .++.++-+|..+.|++-+.     
T Consensus       428 rsfsSGkREgGdFi~~~lSpkGewiYcig---ED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-----  499 (508)
T KOG0275|consen  428 RSFSSGKREGGDFINAILSPKGEWIYCIG---EDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-----  499 (508)
T ss_pred             eeeccCCccCCceEEEEecCCCcEEEEEc---cCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-----
Confidence            9883     45566788999999999998   7789999999999877777655  7777999999999999999     


Q ss_pred             eCCcEEEEe
Q 013871          305 IDNGIKIFH  313 (434)
Q Consensus       305 ~D~~i~iw~  313 (434)
                       |+.+++|.
T Consensus       500 -DgllKLWk  507 (508)
T KOG0275|consen  500 -DGLLKLWK  507 (508)
T ss_pred             -cchhhhcC
Confidence             99999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.90  E-value=3.4e-21  Score=165.36  Aligned_cols=253  Identities=14%  Similarity=0.194  Sum_probs=191.4

Q ss_pred             CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013871           60 DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS  138 (434)
Q Consensus        60 d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~  138 (434)
                      +.-+|+++ .|.+|++|...++......+.....|..+++.|+ +..+|.      ..-..||+||+.+.+ ..++.+..
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAa------a~~qhvRlyD~~S~n-p~Pv~t~e   80 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPD-KKDLAA------AGNQHVRLYDLNSNN-PNPVATFE   80 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCC-cchhhh------ccCCeeEEEEccCCC-CCceeEEe
Confidence            34566766 4679999999886543334444557999999999 444442      233479999998865 44899999


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      .+...+..+.|..+|+++..   ...|.+.+       +|.+..   ..+.-.+....+|+++..+|+-.+|+  +|..+
T Consensus        81 ~h~kNVtaVgF~~dgrWMyT---gseDgt~k-------IWdlR~---~~~qR~~~~~spVn~vvlhpnQteLi--s~dqs  145 (311)
T KOG0315|consen   81 GHTKNVTAVGFQCDGRWMYT---GSEDGTVK-------IWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELI--SGDQS  145 (311)
T ss_pred             ccCCceEEEEEeecCeEEEe---cCCCceEE-------EEeccC---cccchhccCCCCcceEEecCCcceEE--eecCC
Confidence            99999999999999998533   33555554       455433   23333445578999999999998988  58899


Q ss_pred             CeEEEEecccc-eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCC--CceEEE
Q 013871          219 ASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAE--CSVTSE  286 (434)
Q Consensus       219 ~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~--~~~~~~  286 (434)
                      +.|++||+..+ ...++   ...++.++...|||.+|+.+.   ..|+.++|++-+.      +.+.++++|  .+..|.
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~  222 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL  222 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEE
Confidence            99999999765 33333   356788999999999998876   6789999997643      456677777  556699


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec----ccceeeEEEcCCCCCCCCch
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF----DKLFQAEWKPVSPDKFGDIS  344 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~----~~~~~~~w~p~~~~~~~~~~  344 (434)
                      +|||++||+|+++      |.+++||+.++-+..+...    .=+|+.+|+-++.+|+.+..
T Consensus       223 lSPd~k~lat~ss------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  223 LSPDVKYLATCSS------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             ECCCCcEEEeecC------CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC
Confidence            9999999999999      9999999998873333222    24899999999999998853

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.89  E-value=4.4e-22  Score=195.23  Aligned_cols=236  Identities=13%  Similarity=0.193  Sum_probs=189.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-------------------------------cEEEEEeecCcCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-------------------------------EAVYQLFQKNMTKT   50 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-------------------------------~~~~~~~~~~~~~~   50 (434)
                      |.|..||+|++.||..-     .|..|+||.+...                               ...+++.+   |..
T Consensus       381 v~ca~fSddssmlA~Gf-----~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G---H~G  452 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGF-----VDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG---HSG  452 (707)
T ss_pred             ceeEeecCCcchhhccc-----cccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec---CCC
Confidence            68999999999888655     6788899987521                               11223333   336


Q ss_pred             CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871           51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      .|-...|+||.++|++++ |.++++|.+..+......+.|...|..+.|+|- +.++|.     .+.+.+-++|....  
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFat-----as~D~tArLWs~d~--  524 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFAT-----ASHDQTARLWSTDH--  524 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEe-----cCCCceeeeeeccc--
Confidence            666889999999999996 579999999998887888888889999999998 555553     35667889999988  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                       ..+++..-.|-+++-++.|+|+..+++.   ...|++.+.|...         .+...++-..+.++|.+++|||+|++
T Consensus       525 -~~PlRifaghlsDV~cv~FHPNs~Y~aT---GSsD~tVRlWDv~---------~G~~VRiF~GH~~~V~al~~Sp~Gr~  591 (707)
T KOG0263|consen  525 -NKPLRIFAGHLSDVDCVSFHPNSNYVAT---GSSDRTVRLWDVS---------TGNSVRIFTGHKGPVTALAFSPCGRY  591 (707)
T ss_pred             -CCchhhhcccccccceEEECCccccccc---CCCCceEEEEEcC---------CCcEEEEecCCCCceEEEEEcCCCce
Confidence             8888888899999999999999998543   4577887765432         22234444556899999999999999


Q ss_pred             EEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          210 FAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++  +|..++.|.+||+.. ..+.++  |++.+.++.||.+|..|+++|.||   +|.+||+..-
T Consensus       592 La--Sg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~~  651 (707)
T KOG0263|consen  592 LA--SGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTKV  651 (707)
T ss_pred             Ee--ecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchhh
Confidence            99  799999999999975 555555  789999999999999999999766   9999998754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3.8e-21  Score=163.86  Aligned_cols=268  Identities=16%  Similarity=0.180  Sum_probs=199.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |+++.|.-||+|.+|++     .|++|++|+...|.+++++.++.   ..+..++-+.|+..||++ +|..|.+||+++.
T Consensus        20 V~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG---~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG   91 (307)
T KOG0316|consen   20 VRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHG---HEVLDAALSSDNSKFASCGGDKAVQVWDVNTG   91 (307)
T ss_pred             eEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCC---ceeeeccccccccccccCCCCceEEEEEcccC
Confidence            78999999999999999     89999999999999999998865   566677888888777766 5679999999997


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ......+.|...|..+.|.-. ...++     +++.+..+++|+..+.+ .+|+..+.-.+..+.++..+.   +.++..
T Consensus        92 kv~Rr~rgH~aqVNtV~fNee-sSVv~-----SgsfD~s~r~wDCRS~s-~ePiQildea~D~V~Si~v~~---heIvaG  161 (307)
T KOG0316|consen   92 KVDRRFRGHLAQVNTVRFNEE-SSVVA-----SGSFDSSVRLWDCRSRS-FEPIQILDEAKDGVSSIDVAE---HEIVAG  161 (307)
T ss_pred             eeeeecccccceeeEEEecCc-ceEEE-----eccccceeEEEEcccCC-CCccchhhhhcCceeEEEecc---cEEEee
Confidence            766666778888999998865 33333     46778899999998754 567777766776666665543   233322


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--C-
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G-  235 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~-  235 (434)
                        .+|.+.+.       |.+....     ...+ -..||+++.||+||+...  .+.+++.+++.|..+..+ ..+  | 
T Consensus       162 --S~DGtvRt-------ydiR~G~-----l~sDy~g~pit~vs~s~d~nc~L--a~~l~stlrLlDk~tGklL~sYkGhk  225 (307)
T KOG0316|consen  162 --SVDGTVRT-------YDIRKGT-----LSSDYFGHPITSVSFSKDGNCSL--ASSLDSTLRLLDKETGKLLKSYKGHK  225 (307)
T ss_pred             --ccCCcEEE-------EEeecce-----eehhhcCCcceeEEecCCCCEEE--EeeccceeeecccchhHHHHHhcccc
Confidence              24555443       3332111     1111 156999999999998777  489999999999875443 332  2 


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                       ......++++....+++.|+   .||.|+|||+.+...+..+..+.   +..+++.|.-.-|++|+       +..+..
T Consensus       226 n~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-------~~~~~~  295 (307)
T KOG0316|consen  226 NMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT-------GHGDLF  295 (307)
T ss_pred             cceeeeeeeecccceeEEecc---CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec-------CCceec
Confidence             23345677887778888777   78999999999999999998873   44599999999999988       566666


Q ss_pred             Ee
Q 013871          312 FH  313 (434)
Q Consensus       312 w~  313 (434)
                      |-
T Consensus       296 ~~  297 (307)
T KOG0316|consen  296 WY  297 (307)
T ss_pred             ee
Confidence            64

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=1.6e-19  Score=170.39  Aligned_cols=282  Identities=12%  Similarity=0.077  Sum_probs=182.5

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      +.+++.+     .|+.|.+||+.+++.+..+...    ..+..+.|+||+++++ ++ .++.|.+||.......  ..+.
T Consensus         2 ~~~~s~~-----~d~~v~~~d~~t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~   70 (300)
T TIGR03866         2 KAYVSNE-----KDNTISVIDTATLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP   70 (300)
T ss_pred             cEEEEec-----CCCEEEEEECCCCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc
Confidence            4566666     7899999999999988887653    2344799999998764 44 4579999998764421  2222


Q ss_pred             -cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013871           90 -VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN  168 (434)
Q Consensus        90 -~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~  168 (434)
                       ...+..+.|+|++ ..+.+.    ....+.+.+|++.+   .+.+..... ......+.|+|+|..+++...   +.. 
T Consensus        71 ~~~~~~~~~~~~~g-~~l~~~----~~~~~~l~~~d~~~---~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~---~~~-  137 (300)
T TIGR03866        71 SGPDPELFALHPNG-KILYIA----NEDDNLVTVIDIET---RKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE---TTN-  137 (300)
T ss_pred             CCCCccEEEECCCC-CEEEEE----cCCCCeEEEEECCC---CeEEeEeeC-CCCcceEEECCCCCEEEEEec---CCC-
Confidence             2346678899985 444322    13346899999976   454444332 233467899999998765421   111 


Q ss_pred             ceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CC-----c--C
Q 013871          169 QSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GS-----G--P  238 (434)
Q Consensus       169 ~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~-----~--~  238 (434)
                             .++.++.... .....+........++|+|+|+.+++ .+..++.+.+||++... +..+  +.     .  .
T Consensus       138 -------~~~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       138 -------MAHFIDTKTY-EIVDNVLVDQRPRFAEFTADGKELWV-SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             -------eEEEEeCCCC-eEEEEEEcCCCccEEEECCCCCEEEE-EcCCCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence                   1222333222 11111111334577999999998875 45567899999997543 2322  11     1  1


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ...+.|+|+|++++++..+  ++.|.+||+++++.+.... ++.+..++|+|||++|+++...     ++.|+|||..+.
T Consensus       209 ~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-----~~~i~v~d~~~~  281 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV-----SNDVSVIDVAAL  281 (300)
T ss_pred             ccceEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC-----CCeEEEEECCCC
Confidence            2358899999987665433  2579999999988776543 4467779999999999887542     899999999654


Q ss_pred             -eeeeeec-ccceeeEEE
Q 013871          318 -LFFKKMF-DKLFQAEWK  333 (434)
Q Consensus       318 -~~~~~~~-~~~~~~~w~  333 (434)
                       ++..... .+.+.++.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~  299 (300)
T TIGR03866       282 KVIKSIKVGRLPWGVVVR  299 (300)
T ss_pred             cEEEEEEcccccceeEeC
Confidence             3444333 234555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.89  E-value=3.6e-20  Score=171.61  Aligned_cols=261  Identities=17%  Similarity=0.237  Sum_probs=191.0

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ...+.++.|+|++++++++. ++.|.+|+............+...+..+.|+|++ ..+++     .+..+.+.+|++..
T Consensus         9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-----~~~~~~i~i~~~~~   82 (289)
T cd00200           9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLAS-----GSSDKTIRLWDLET   82 (289)
T ss_pred             CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEE-----EcCCCeEEEEEcCc
Confidence            36777999999999999886 7899999998755433444455667899999984 44443     23467999999987


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS  206 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd  206 (434)
                         .+.+.....+...+..+.|++++..++...   .|.         .+..++.... .....+ .+...|.+++|+|+
T Consensus        83 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~---------~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~  146 (289)
T cd00200          83 ---GECVRTLTGHTSYVSSVAFSPDGRILSSSS---RDK---------TIKVWDVETG-KCLTTLRGHTDWVNSVAFSPD  146 (289)
T ss_pred             ---ccceEEEeccCCcEEEEEEcCCCCEEEEec---CCC---------eEEEEECCCc-EEEEEeccCCCcEEEEEEcCc
Confidence               566666667777889999999976554321   121         2333333322 122222 34678999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                      +..++  ++..++.+.+||++ ...+..+  +...+.++.|+|+++.+++++   .+|.|.+||+.+++.+..+..+  .
T Consensus       147 ~~~l~--~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~  221 (289)
T cd00200         147 GTFVA--SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENG  221 (289)
T ss_pred             CCEEE--EEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCc
Confidence            77666  35568899999996 3333333  567899999999999998888   4579999999988888877444  5


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +..+.|+|++.++++++.      |+.|++|++. ++.+...  +...+..+.|.|.+..++..
T Consensus       222 i~~~~~~~~~~~~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  279 (289)
T cd00200         222 VNSVAFSPDGYLLASGSE------DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG  279 (289)
T ss_pred             eEEEEEcCCCcEEEEEcC------CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence            666999999999999887      9999999996 4544443  33568999999987666654

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.3e-22  Score=194.80  Aligned_cols=233  Identities=10%  Similarity=0.188  Sum_probs=174.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--------------------------------------------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--------------------------------------------   37 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--------------------------------------------   37 (434)
                      |++|.|||||+||||++     +|+.|+||.+..-+                                            
T Consensus       270 Iw~mKFS~DGKyLAsaG-----eD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  270 IWAMKFSHDGKYLASAG-----EDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             EEEEEeCCCCceeeecC-----CCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            89999999999999999     99999999886500                                            


Q ss_pred             ----------------EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013871           38 ----------------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        38 ----------------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~  101 (434)
                                      +++.|.+   |...+..+.||.++-+|-+..|.+|++|.+.....+ ..-.|.+-|++++|+|-
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~G---Ht~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL-~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKG---HTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECL-KVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhc---cchhheecccccCCeeEeccccccEEeecCCCccee-eEEecCCeeEEEEeccc
Confidence                            0011111   446677899999888888889999999999865442 23456778999999998


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013871          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      ++.++.     ++..++.||||+++..   +.             +.|+.                         |    
T Consensus       421 DDryFi-----SGSLD~KvRiWsI~d~---~V-------------v~W~D-------------------------l----  450 (712)
T KOG0283|consen  421 DDRYFI-----SGSLDGKVRLWSISDK---KV-------------VDWND-------------------------L----  450 (712)
T ss_pred             CCCcEe-----ecccccceEEeecCcC---ee-------------Eeehh-------------------------h----
Confidence            776655     4678899999999761   10             11110                         0    


Q ss_pred             eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e----C------CcCeeEEEECCCCC-
Q 013871          182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L----G------SGPYNTVRWNPKGK-  249 (434)
Q Consensus       182 ~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~----~------~~~~~~i~~SP~g~-  249 (434)
                                   ..-|.+++|+|||+..+|  |...|.+++|+..+..+.. +    +      ...|+.+.|.|... 
T Consensus       451 -------------~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~  515 (712)
T KOG0283|consen  451 -------------RDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD  515 (712)
T ss_pred             -------------hhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC
Confidence                         346789999999877764  8889999999987554332 1    1      23688999988543 


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      -|++.+   .|..|+|+|.++.+++..+.+.    .-+.-.|+.||+||++++.      |..|+||++...
T Consensus       516 ~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se------Ds~VYiW~~~~~  578 (712)
T KOG0283|consen  516 EVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE------DSWVYIWKNDSF  578 (712)
T ss_pred             eEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec------CceEEEEeCCCC
Confidence            455566   3459999999988888888865    2234799999999999998      999999998544

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=4.7e-21  Score=165.61  Aligned_cols=260  Identities=14%  Similarity=0.223  Sum_probs=189.4

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|+.||..|+++ .+.++.+|++.....  ....+.+...|..+.|+|.....++...     .+..|++|++.
T Consensus        21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas-----~dk~ir~wd~r   95 (313)
T KOG1407|consen   21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS-----GDKTIRIWDIR   95 (313)
T ss_pred             hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec-----CCceEEEEEec
Confidence            566789999999999998 578999999875422  2234455667888999998766666543     34589999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      .   ++++..... +.+...+.|+|+|+++++.-     +..       .|-.++.... ......+....++.+.|+-+
T Consensus        96 ~---~k~~~~i~~-~~eni~i~wsp~g~~~~~~~-----kdD-------~it~id~r~~-~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   96 S---GKCTARIET-KGENINITWSPDGEYIAVGN-----KDD-------RITFIDARTY-KIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             c---CcEEEEeec-cCcceEEEEcCCCCEEEEec-----Ccc-------cEEEEEeccc-ceeehhcccceeeeeeecCC
Confidence            8   677766554 44667899999999988742     211       1344443322 11122222567889999977


Q ss_pred             CCEEEEEEccCCCeEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871          207 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                      +..|++..|  .|.|.|..- .-+++.++  |.....||.|+|+|+++|+|+.|   ..+.+||++..-++..+.-.  .
T Consensus       159 nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsAD---AlvSLWD~~ELiC~R~isRldwp  233 (313)
T KOG1407|consen  159 NDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD---ALVSLWDVDELICERCISRLDWP  233 (313)
T ss_pred             CCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecccc---ceeeccChhHhhhheeeccccCc
Confidence            777776444  467777654 34555555  66666778999999999999944   59999999988777776554  5


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      +-.++||-||++|++|+.      |.-|-|=.+ +|..+.+.+. .+.+.|+|+|..+.|..+
T Consensus       234 VRTlSFS~dg~~lASaSE------Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA  290 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASE------DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYA  290 (313)
T ss_pred             eEEEEeccCcceeeccCc------cceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEE
Confidence            556999999999999999      999988777 7888877755 589999999997655443

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.89  E-value=5.3e-21  Score=171.80  Aligned_cols=274  Identities=14%  Similarity=0.182  Sum_probs=210.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+|+++-|-..+++|.+     .|++++|||+.+|+...++.++-   ..++.+++|+---|+.++. |++|+.||+...
T Consensus       154 Vr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi---~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  154 VRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHI---ETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             EEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchh---heeeeeeecccCceEEEecCCCeeEEEechhh
Confidence            78999999999999988     89999999999999988887653   6788899999999988875 579999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|+.+|.+++++|..+ .|+     +++.+..+++||+.+   ...+..+..|+..+.++..+|-.-.++.  
T Consensus       226 kvIR~YhGHlS~V~~L~lhPTld-vl~-----t~grDst~RvWDiRt---r~~V~~l~GH~~~V~~V~~~~~dpqvit--  294 (460)
T KOG0285|consen  226 KVIRHYHGHLSGVYCLDLHPTLD-VLV-----TGGRDSTIRVWDIRT---RASVHVLSGHTNPVASVMCQPTDPQVIT--  294 (460)
T ss_pred             hhHHHhccccceeEEEeccccce-eEE-----ecCCcceEEEeeecc---cceEEEecCCCCcceeEEeecCCCceEE--
Confidence            65556778899999999999833 333     457788999999998   8899999999999999999886555432  


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCc
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~  237 (434)
                       ...|.+.+       ||.+.  .+........++..|.+++.+|....||  +++ +..+.-|++- +.-+..+  |+.
T Consensus       295 -~S~D~tvr-------lWDl~--agkt~~tlt~hkksvral~lhP~e~~fA--Sas-~dnik~w~~p~g~f~~nlsgh~~  361 (460)
T KOG0285|consen  295 -GSHDSTVR-------LWDLR--AGKTMITLTHHKKSVRALCLHPKENLFA--SAS-PDNIKQWKLPEGEFLQNLSGHNA  361 (460)
T ss_pred             -ecCCceEE-------Eeeec--cCceeEeeecccceeeEEecCCchhhhh--ccC-CccceeccCCccchhhccccccc
Confidence             23555555       34332  2222233334577899999999988888  444 4488889883 4444433  788


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe---eC-------CCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT---RA-------ECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~---~~-------~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      .+|++..+.||-++ +|+   .+|.|.+||.+++-.....   ..       ..+...+|.-.|..|+||..      |.
T Consensus       362 iintl~~nsD~v~~-~G~---dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea------dK  431 (460)
T KOG0285|consen  362 IINTLSVNSDGVLV-SGG---DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA------DK  431 (460)
T ss_pred             eeeeeeeccCceEE-EcC---CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC------Cc
Confidence            89999999887554 444   4589999999987333222   21       14566899999999999999      99


Q ss_pred             cEEEEeecCc
Q 013871          308 GIKIFHHNGS  317 (434)
Q Consensus       308 ~i~iw~~~g~  317 (434)
                      +|++|.-+..
T Consensus       432 tIk~~keDe~  441 (460)
T KOG0285|consen  432 TIKMYKEDEH  441 (460)
T ss_pred             ceEEEecccc
Confidence            9999986544

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.88  E-value=4.6e-21  Score=194.15  Aligned_cols=288  Identities=16%  Similarity=0.241  Sum_probs=198.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |.+++.||||..++|++.-   .|+.++||+...-            +.+.+.   ..|...+.|+.||+||+|||+++|
T Consensus        16 IfSIdv~pdg~~~aTgGq~---~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m---~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   16 IFSIDVHPDGVKFATGGQV---LDGGIVIWSQDPVLDEKEEKNENLPKHLCTM---DDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             EEEEEecCCceeEecCCcc---ccccceeeccccccchhhhhhcccchhheee---ccccCceeEEEECCCCCeEeeccC
Confidence            5689999999999998732   4667779986321            112222   224578889999999999999987


Q ss_pred             C-eEEEEeCCC------CCC------------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           70 N-EIQFFDTTD------FPK------------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        70 ~-~i~v~~~~~------~~~------------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      + -|.||+-..      +..            ......|...|.++.|+|+ +.+++     +.+.+.+|-||+..+   
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~-~~~lv-----S~s~DnsViiwn~~t---  160 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD-DSLLV-----SVSLDNSVIIWNAKT---  160 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC-ccEEE-----EecccceEEEEcccc---
Confidence            5 789998762      110            1112335567999999997 55555     357788999999988   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-cceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                      ...+.....|..-+..+.|.|-|++++   +...|++.+.|- .+.++... +.+-++ ..  .....+..+.|||||.+
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP~Gky~A---SqsdDrtikvwrt~dw~i~k~-It~pf~-~~--~~~T~f~RlSWSPDG~~  233 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDPIGKYFA---SQSDDRTLKVWRTSDWGIEKS-ITKPFE-ES--PLTTFFLRLSWSPDGHH  233 (942)
T ss_pred             ceeeeeeecccccccceEECCccCeee---eecCCceEEEEEcccceeeEe-eccchh-hC--CCcceeeecccCCCcCe
Confidence            577788888888899999999999964   445788888664 21111111 011100 00  11345678999999999


Q ss_pred             EEEEEccCCC--eEEEEeccc---ceeEEeCCcCeeEEEECCC-------------C-CeEEEEecCCCCCeEEEEEccC
Q 013871          210 FAVVYGFMPA--SATIFNKKC---RPILELGSGPYNTVRWNPK-------------G-KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       210 ~av~~g~~~~--~v~l~d~~~---~~~~~~~~~~~~~i~~SP~-------------g-~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      |++..+...+  .+.|.+-.+   ..-.--|.+++.+++|+|.             + .+.+++..|..|+.|.||....
T Consensus       234 las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             ecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            9976443322  677776532   2222238899999999981             1 1222222233678999999877


Q ss_pred             CEEEEEe---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          271 GKQLGTT---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       271 ~~~i~~~---~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      .+.+...   -...+++++|||||..|+.++.      |++|.+.+++.+
T Consensus       314 ~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~------DGtV~~i~Fee~  357 (942)
T KOG0973|consen  314 PRPLFVIHNLFNKSIVDMSWSPDGFSLFACSL------DGTVALIHFEEK  357 (942)
T ss_pred             CCchhhhhhhhcCceeeeeEcCCCCeEEEEec------CCeEEEEEcchH
Confidence            6655443   3457888999999999999999      999999999654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.1e-21  Score=173.87  Aligned_cols=272  Identities=15%  Similarity=0.224  Sum_probs=190.4

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.| .++||++|+|||+++ |.+..+|++.....   ......|...|..+.||||....+++      +....+.+|++
T Consensus       226 EVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaC------g~~e~~~lwDv  298 (519)
T KOG0293|consen  226 EVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLAC------GFDEVLSLWDV  298 (519)
T ss_pred             cEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEec------CchHheeeccC
Confidence            567 899999999999996 55889998755332   22333456789999999996566665      44446899999


Q ss_pred             CCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEEC
Q 013871          126 GKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       126 ~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws  204 (434)
                      .+   +....... .+.....+..|.|||..+++. +  .|.         .++.++.+|.....-.-...-.|++++.+
T Consensus       299 ~t---gd~~~~y~~~~~~S~~sc~W~pDg~~~V~G-s--~dr---------~i~~wdlDgn~~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  299 DT---GDLRHLYPSGLGFSVSSCAWCPDGFRFVTG-S--PDR---------TIIMWDLDGNILGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             Cc---chhhhhcccCcCCCcceeEEccCCceeEec-C--CCC---------cEEEecCCcchhhcccccccceeEEEEEc
Confidence            87   33322211 123456788999999996542 1  232         23444444432110000013468999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +||+.+..+.  .|..+.+|+.....-..+  ...+++++..|.||+++++.-.   +..|.+||++..+.+..+.+|  
T Consensus       364 ~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq  438 (519)
T KOG0293|consen  364 YDGKYVLLVT--VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQ  438 (519)
T ss_pred             CCCcEEEEEe--cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccc
Confidence            9999998753  578999999864432212  5788999999999999988763   458999999988888877776  


Q ss_pred             --CceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCCchhhhhccCccc
Q 013871          281 --CSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGDISELIKSVGSLK  354 (434)
Q Consensus       281 --~~~~~~ws-pdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~  354 (434)
                        .++.-+|- -+..++++|+.      |+.|+|||. +|+++...  +...+.+|+|+|..+..|....    +...++
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSE------D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas----DDgtIR  508 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSE------DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS----DDGTIR  508 (519)
T ss_pred             cceEEEeccCCCCcceEEecCC------CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccC----CCCeEE
Confidence              33444554 35589999999      999999998 67776654  5668999999999999887642    223356


Q ss_pred             cccc
Q 013871          355 VAET  358 (434)
Q Consensus       355 ~~~~  358 (434)
                      |+.+
T Consensus       509 IWg~  512 (519)
T KOG0293|consen  509 IWGP  512 (519)
T ss_pred             EecC
Confidence            6665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.87  E-value=1.3e-21  Score=178.39  Aligned_cols=262  Identities=13%  Similarity=0.148  Sum_probs=196.8

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      +..+..++|+|+|+.|++++ .|++.+|+...+.-....+-|...|+.+.||+++...|      ++...+.|++|+...
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmi------SgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMI------SGDKGGMIKYWQPNM  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEE------EcCCCceEEecccch
Confidence            36677899999999999985 58999999977665455666777899999999964444      356678999999754


Q ss_pred             CCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          128 DLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       128 ~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                          ..+.....+ ...+..++++|.....+.   ...|.+.+.|.       .  ....+.++.-.+.-.|.+++|+|.
T Consensus       170 ----nnVk~~~ahh~eaIRdlafSpnDskF~t---~SdDg~ikiWd-------f--~~~kee~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  170 ----NNVKIIQAHHAEAIRDLAFSPNDSKFLT---CSDDGTIKIWD-------F--RMPKEERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             ----hhhHHhhHhhhhhhheeccCCCCceeEE---ecCCCeEEEEe-------c--cCCchhheeccCCCCcceeccCCc
Confidence                223323333 477889999997665433   22455555332       2  222233444456778999999998


Q ss_pred             CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C
Q 013871          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C  281 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~  281 (434)
                      -..++  +|+.|..|++||.+ +..+.++  |+..|..+.|+|+|.+|++++.|.   .++++|+++.+.+.++++|  .
T Consensus       234 kgLia--sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkEl~~~r~Hkkd  308 (464)
T KOG0284|consen  234 KGLIA--SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKELFTYRGHKKD  308 (464)
T ss_pred             cceeE--EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHHHHHhhcchhh
Confidence            88888  68888899999997 4556666  688899999999999999999655   9999999999999999887  7


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCCCCCCCC
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.|+|-..-|++.+..     |+.|..|.+..+ .+-.   .+..++|.++|+|.+-.|...
T Consensus       309 v~~~~WhP~~~~lftsgg~-----Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tg  368 (464)
T KOG0284|consen  309 VTSLTWHPLNESLFTSGGS-----DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATG  368 (464)
T ss_pred             heeeccccccccceeeccC-----CCceEEEeccccccccCCCcccccceeeeeccccceeEeec
Confidence            8889999987766655444     999999999743 2322   345689999999988666554

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.87  E-value=5.7e-20  Score=178.94  Aligned_cols=290  Identities=13%  Similarity=0.134  Sum_probs=218.7

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeee-ecCCCcEEEEecC-CeEEEEeCCCCCCceeeeeecCCeeEEEEeCC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIR-FSSDEAVACRMAT-NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~-~S~d~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~  101 (434)
                      .|.++.++|..+++.+.++.+.+   +.+..++ |.|+++++|.+.+ .++++|+..+... .....|.+.|.++....+
T Consensus       301 aeQnl~l~d~~~l~i~k~ivG~n---dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~  376 (775)
T KOG0319|consen  301 AEQNLFLYDEDELTIVKQIVGYN---DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSS  376 (775)
T ss_pred             ccceEEEEEccccEEehhhcCCc---hhheeeeecCCccceEEEEeCCCceEEEecCCCce-EEEeCchhheeeeeeccc
Confidence            57999999999999988887765   3444555 5678899998865 6999999888765 466777888888874333


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          102 PGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                       +..++     +.+.+..+++|.+.+.. ...++.+.+.|...+..+..+..|-.+++.++  .|.+.+.|       .+
T Consensus       377 -g~lla-----t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS--~D~tlK~W-------~l  441 (775)
T KOG0319|consen  377 -GDLLA-----TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS--QDCTLKLW-------DL  441 (775)
T ss_pred             -CcEEE-----EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec--CCceEEEe-------cC
Confidence             23444     34667899999994421 14456677888888888988887777655544  45666543       33


Q ss_pred             eeCCcceeee-------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCe
Q 013871          181 TTDGTHEGLV-------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       181 ~~~~~~~~~v-------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~  250 (434)
                      .........+       ...|+..|++++.+|+.+.+|  +|++|.+.+||++.. .....+  |+..+-++.|+|..+.
T Consensus       442 ~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiA--T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~  519 (775)
T KOG0319|consen  442 PKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIA--TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL  519 (775)
T ss_pred             CCcccccccceehhhHHHHhhcccccceEecCCCceEE--ecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence            2211111111       123578999999999999999  899999999999963 333344  8899999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecc
Q 013871          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFD  325 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~  325 (434)
                      +++++   .|++|+||.++++.++.++.+|.  +..++|-.+|..|++++.      ||-+|||++... ++..  .|.+
T Consensus       520 laT~S---gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~D  590 (775)
T KOG0319|consen  520 LATCS---GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHND  590 (775)
T ss_pred             eEecc---CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccc
Confidence            99998   45699999999999999999983  334999999999999999      999999999544 4444  4778


Q ss_pred             cceeeEEEcCCCCCCCCc
Q 013871          326 KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~~~  343 (434)
                      .+|.++=.|....+++..
T Consensus       591 rvWaL~~~~~~~~~~tgg  608 (775)
T KOG0319|consen  591 RVWALSVSPLLDMFVTGG  608 (775)
T ss_pred             eeEEEeecCccceeEecC
Confidence            999999999887666543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.1e-20  Score=171.74  Aligned_cols=271  Identities=15%  Similarity=0.091  Sum_probs=209.7

Q ss_pred             cceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |.+|+|||..-  +.+|.+       ..|.||+..+...+.+|....   ..+-++.|-.||++||.+. .|.|+|||..
T Consensus        29 vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk---~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   29 VSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFK---DVVYSVDFRSDGRLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             ceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhc---cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence            78999999653  444544       679999988877666554433   4455889999999999985 5899999966


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .........-|...+....|+|.++.+++     +++.+..+++|++.+   ......++.|...+.+..|+|...++++
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~-----s~sDd~v~k~~d~s~---a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLV-----SGSDDKVVKYWDLST---AYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEE-----ecCCCceEEEEEcCC---cEEEEEecCCcceeEeeccccCCCeEEE
Confidence            53233344556677889999999555444     345567899999987   4556678889999999999999888866


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE-Ee--
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL-EL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~-~~--  234 (434)
                      ..         +|+|...||...+.+  .....+++..||.++.+-|.|..++.+.|   ..+++||+. +.+.. .+  
T Consensus       171 tG---------sYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgG---n~vkVWDl~~G~qll~~~~~  236 (487)
T KOG0310|consen  171 TG---------SYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGG---NSVKVWDLTTGGQLLTSMFN  236 (487)
T ss_pred             ec---------CCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCC---CeEEEEEecCCceehhhhhc
Confidence            42         455555567665544  56778888999999999999999996433   389999996 44432 22  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      |...++|+++.-+++.|++++   +||.|++||+.+.+.+..+.-+ .+.+++.|||++.++.|-.      ++.+-+=+
T Consensus       237 H~KtVTcL~l~s~~~rLlS~s---LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms------nGlv~~rr  307 (487)
T KOG0310|consen  237 HNKTVTCLRLASDSTRLLSGS---LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS------NGLVSIRR  307 (487)
T ss_pred             ccceEEEEEeecCCceEeecc---cccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc------cceeeeeh
Confidence            889999999999999999999   8889999999999999988776 5667999999999999998      76665543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=6.3e-20  Score=162.71  Aligned_cols=278  Identities=16%  Similarity=0.229  Sum_probs=177.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~   78 (434)
                      |++|+||.||++|+|++     .|+.|+||++.+-+.. +.+..-+..-+.-+.+.|+||-+-++..  .++.|++|.+.
T Consensus        89 vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   89 VTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             eeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            78999999999999999     8999999999764210 1111101011233478999998866655  45799999874


Q ss_pred             CCCC--ceee-----eeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871           79 DFPK--GILY-----RLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        79 ~~~~--~~~~-----~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ....  ....     .++++     .+.++-+..+ ..+|+..     ..+..|.||++.    ++.+............
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsa-----s~dt~i~lw~lk----Gq~L~~idtnq~~n~~  233 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSA-----SLDTKICLWDLK----GQLLQSIDTNQSSNYD  233 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEe-----cCCCcEEEEecC----Cceeeeeccccccccc
Confidence            3211  1111     11122     2333333332 3444432     344579999986    4566655555556667


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      .+.||+|.+|++..   .....+.|.-     .+.-+|...   ..+.|. +...|+.++|||++.+++  +-+.||+++
T Consensus       234 aavSP~GRFia~~g---FTpDVkVwE~-----~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v--tvSkDG~wr  303 (420)
T KOG2096|consen  234 AAVSPDGRFIAVSG---FTPDVKVWEP-----IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV--TVSKDGKWR  303 (420)
T ss_pred             eeeCCCCcEEEEec---CCCCceEEEE-----EeccCcchhhhhhhheeccchhheeeeeeCCCcceeE--EEecCCcEE
Confidence            78899999987754   2233333310     011122211   122232 467899999999999998  567799999


Q ss_pred             EEecccc--------eeEEe-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---CCCceE
Q 013871          223 IFNKKCR--------PILEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---AECSVT  284 (434)
Q Consensus       223 l~d~~~~--------~~~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---~~~~~~  284 (434)
                      |||..-.        .+..+       +..++ .+..||.|+.|+++ ++.   +|.++..++++..-.++   ...+++
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s-~gs---~l~~~~se~g~~~~~~e~~h~~~Is~  378 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVS-FGS---DLKVFASEDGKDYPELEDIHSTTISS  378 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEee-cCC---ceEEEEcccCccchhHHHhhcCceee
Confidence            9987421        11111       22333 68999999999876 444   89999999887665554   337778


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEe-ecC
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNG  316 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~-~~g  316 (434)
                      ++|+|||++++|++       |..+++.+ ..|
T Consensus       379 is~~~~g~~~atcG-------dr~vrv~~ntpg  404 (420)
T KOG2096|consen  379 ISYSSDGKYIATCG-------DRYVRVIRNTPG  404 (420)
T ss_pred             EEecCCCcEEeeec-------ceeeeeecCCCc
Confidence            99999999999998       78888887 444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.9e-20  Score=157.10  Aligned_cols=263  Identities=13%  Similarity=0.130  Sum_probs=201.9

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ++..++.+.|+-||+|+++++ +.+|++|+............|...|.+.+.+-++ ..+|     +.|.+..|.+|++.
T Consensus        16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~-----s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFA-----SCGGDKAVQVWDVN   89 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccc-----cCCCCceEEEEEcc
Confidence            347788999999999999885 5699999998876656666676678888888874 3343     45788899999999


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECc
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wsp  205 (434)
                      +   ++.++....|.+.+..+.||.+...   +++...|.+.+.|.       ...... +....++ ....|.++..+ 
T Consensus        90 T---Gkv~Rr~rgH~aqVNtV~fNeesSV---v~SgsfD~s~r~wD-------CRS~s~-ePiQildea~D~V~Si~v~-  154 (307)
T KOG0316|consen   90 T---GKVDRRFRGHLAQVNTVRFNEESSV---VASGSFDSSVRLWD-------CRSRSF-EPIQILDEAKDGVSSIDVA-  154 (307)
T ss_pred             c---CeeeeecccccceeeEEEecCcceE---EEeccccceeEEEE-------cccCCC-CccchhhhhcCceeEEEec-
Confidence            9   8999999999999999999998765   34455676666443       222221 2222222 24677777775 


Q ss_pred             CCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc--
Q 013871          206 SGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS--  282 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~--  282 (434)
                       +.+++  +|+.|++++.||++ +....+.-..|+|++.||+||+.++.+.   +++++++.|.++|+++..+.+|..  
T Consensus       155 -~heIv--aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~e  228 (307)
T KOG0316|consen  155 -EHEIV--AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNME  228 (307)
T ss_pred             -ccEEE--eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccce
Confidence             33444  69999999999997 4555566788999999999999999888   677999999999999999988833  


Q ss_pred             --eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCCCCCCCCc
Q 013871          283 --VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       283 --~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~~~~~~~~  343 (434)
                        +.|+++....++++++.      |+.+.+||+. +..+.+....   .+-.+.+.|.-+.++.+.
T Consensus       229 ykldc~l~qsdthV~sgSE------DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  229 YKLDCCLNQSDTHVFSGSE------DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             eeeeeeecccceeEEeccC------CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEec
Confidence              34899999999999999      9999999984 4455444332   367889999888877764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=1.4e-19  Score=180.33  Aligned_cols=262  Identities=14%  Similarity=0.206  Sum_probs=196.0

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.++.||+||++++.+ .++.+++|+.....  .......|...|.++.|||++. .++     +...+.+++||++.
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~-~l~-----s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS-YLL-----SGSDDKTLRIWDLK  233 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCc-EEE-----EecCCceEEEeecc
Confidence            566689999999999988 57899999995544  2222345677899999999954 444     24566799999994


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      ..  +..+.+...|...+.++.|+|+|+. ++.  ...|.+.+.|       .+  ..+.....--.+.++|..++|+++
T Consensus       234 ~~--~~~~~~l~gH~~~v~~~~f~p~g~~-i~S--gs~D~tvriW-------d~--~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  234 DD--GRNLKTLKGHSTYVTSVAFSPDGNL-LVS--GSDDGTVRIW-------DV--RTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             CC--CeEEEEecCCCCceEEEEecCCCCE-EEE--ecCCCcEEEE-------ec--cCCeEEEeeeccCCceEEEEECCC
Confidence            42  5778888899999999999999954 333  3355555533       32  232222222235789999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecccce---eEEe--CC-c-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          207 GSEFAVVYGFMPASATIFNKKCRP---ILEL--GS-G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~~---~~~~--~~-~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |+.|+.  ++.|+.+++||+....   +..+  +. . +++++.|+|+|++|+++.   .++.+.+||+..++.+..+..
T Consensus       300 ~~~l~s--~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  300 GNLLVS--ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             CCEEEE--cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecc
Confidence            999995  5669999999997665   2333  22 2 689999999999999998   556999999999988888877


Q ss_pred             CCce-----EEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--ee-cccceeeEEEcCCCCCCCC
Q 013871          280 ECSV-----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~~~~-----~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                      |...     ....+++|+++++++.      |+.|++|+.. +..+..  .+ ...+..+.|+|....+.+.
T Consensus       375 ~~~~~~~~~~~~~~~~~~~i~sg~~------d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~  440 (456)
T KOG0266|consen  375 HSNLVRCIFSPTLSTGGKLIYSGSE------DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASS  440 (456)
T ss_pred             cCCcceeEecccccCCCCeEEEEeC------CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeec
Confidence            6332     2445889999999999      9999999997 443333  34 5678889999998777665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.86  E-value=3.6e-19  Score=189.93  Aligned_cols=285  Identities=14%  Similarity=0.138  Sum_probs=195.9

Q ss_pred             CCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC---C---ceeee-eecCCee
Q 013871           25 EKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP---K---GILYR-LRVPGVA   94 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~---~---~~~~~-~~~~~v~   94 (434)
                      ++.+++|+..+......+...  ..|...+.+++|++||+++|+++ ++.|+||+.....   .   ..... .....+.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            455778887655443332211  11346677899999999999885 6799999975311   0   00111 1234678


Q ss_pred             EEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEEEEecccccCceeec
Q 013871           95 AFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus        95 ~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      ++.|+|..+..++.     .+.++.|++|++.+   ++.+.....|...+..+.|+| +|..|+..   ..|.+.+.   
T Consensus       537 ~l~~~~~~~~~las-----~~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~i---  602 (793)
T PLN00181        537 GICWNSYIKSQVAS-----SNFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKL---  602 (793)
T ss_pred             eEEeccCCCCEEEE-----EeCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEE---
Confidence            89998875566653     35678999999987   677777888888999999997 56654332   23444443   


Q ss_pred             ceeEEEEeeCCcceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEecccc--eeEEe--CCcCeeEEEECCCC
Q 013871          174 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKG  248 (434)
Q Consensus       174 ~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws-pdg~~~av~~g~~~~~v~l~d~~~~--~~~~~--~~~~~~~i~~SP~g  248 (434)
                          |.+  ... .....+.....|.++.|+ ++|..|+  +|..++.|++||++..  .+..+  |...+.++.|+ ++
T Consensus       603 ----Wd~--~~~-~~~~~~~~~~~v~~v~~~~~~g~~la--tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~  672 (793)
T PLN00181        603 ----WSI--NQG-VSIGTIKTKANICCVQFPSESGRSLA--FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS  672 (793)
T ss_pred             ----EEC--CCC-cEEEEEecCCCeEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC
Confidence                322  221 222223334678899995 5688877  5788999999999643  23333  77899999997 78


Q ss_pred             CeEEEEecCCCCCeEEEEEccC------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-ee
Q 013871          249 KFLCLAGFGNLPGDMAFWDYVD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF  319 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~  319 (434)
                      .+|++++   .|+.|+|||+..      .+.+..+.+|  .+..+.|+|+|.+|++++.      |+.|+||+.... .+
T Consensus       673 ~~lvs~s---~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~  743 (793)
T PLN00181        673 STLVSSS---TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPV  743 (793)
T ss_pred             CEEEEEE---CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCce
Confidence            8999998   556999999874      3567777776  3456999999999999999      999999997432 11


Q ss_pred             ee---------------eecccceeeEEEcCCCCCCCC
Q 013871          320 FK---------------KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       320 ~~---------------~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ..               ...+.+..++|+|++..++..
T Consensus       744 ~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~  781 (793)
T PLN00181        744 LSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAA  781 (793)
T ss_pred             EEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEe
Confidence            10               011348899999998877765

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.86  E-value=8.2e-21  Score=170.93  Aligned_cols=253  Identities=14%  Similarity=0.221  Sum_probs=178.7

Q ss_pred             CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013871           22 TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK  100 (434)
Q Consensus        22 ~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp  100 (434)
                      ++.|+.|+|||+.+.+++.+|..+.   ..+..+.++. +.++.++.|.+|+.|.+...   ....+... .+..+.-+-
T Consensus        85 Gs~DG~VkiWnlsqR~~~~~f~AH~---G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~tilg~s~~~gIdh~~  157 (433)
T KOG0268|consen   85 GSCDGEVKIWNLSQRECIRTFKAHE---GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTILGKSVYLGIDHHR  157 (433)
T ss_pred             cccCceEEEEehhhhhhhheeeccc---CceeeEEecc-cceEEecCCcceeeeeccCC---cceeeecccccccccccc
Confidence            3489999999999999999998865   5666777776 77777778889999998763   22222222 222332221


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      .    ..+|.  ++|  ..|.||+...   ..|+.+.+..-..+.++++||-.+.|+..+.  .|.+..       ||.+
T Consensus       158 ~----~~~Fa--TcG--e~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIv-------LyD~  217 (433)
T KOG0268|consen  158 K----NSVFA--TCG--EQIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIV-------LYDL  217 (433)
T ss_pred             c----ccccc--ccC--ceeeeccccc---CCccceeecCCCceeEEecCCCcchheeeec--cCCceE-------EEec
Confidence            1    11221  112  3789999987   7888888888888899999999998866543  333332       3333


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce--eEEeCCcCeeEEEECCCCCeEEEEec
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP--ILELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~--~~~~~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      ....- ...+.+  ...-+.++|+|.+-.|.  ++.+|..++.||++.  .+  ++.-|...+.++.|||.|+-+++|++
T Consensus       218 R~~~P-l~KVi~--~mRTN~IswnPeafnF~--~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy  292 (433)
T KOG0268|consen  218 RQASP-LKKVIL--TMRTNTICWNPEAFNFV--AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY  292 (433)
T ss_pred             ccCCc-cceeee--eccccceecCcccccee--eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence            22221 111212  45567899999554444  799999999999973  22  33347788999999999999999997


Q ss_pred             CCCCCeEEEEEccCCE---EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          257 GNLPGDMAFWDYVDGK---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~---~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |.   +|+||.++.+.   ...+-.-..+.++.||-|.+|+++|+.      |+.|++|.-.
T Consensus       293 Dk---sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~  345 (433)
T KOG0268|consen  293 DK---SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK  345 (433)
T ss_pred             cc---eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence            76   99999988763   233333357888999999999999999      9999999863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.85  E-value=1.3e-20  Score=172.25  Aligned_cols=267  Identities=14%  Similarity=0.231  Sum_probs=193.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |..+.|=++...|+|.+     .|..|++|++..++  .+.++.+..   ..+..+.|.+++++++.. .|+.+++|+++
T Consensus       178 v~~v~~l~~sdtlatgg-----~Dr~Ik~W~v~~~k~~~~~tLaGs~---g~it~~d~d~~~~~~iAas~d~~~r~Wnvd  249 (459)
T KOG0288|consen  178 VHDVEFLRNSDTLATGG-----SDRIIKLWNVLGEKSELISTLAGSL---GNITSIDFDSDNKHVIAASNDKNLRLWNVD  249 (459)
T ss_pred             cceeEEccCcchhhhcc-----hhhhhhhhhcccchhhhhhhhhccC---CCcceeeecCCCceEEeecCCCceeeeecc
Confidence            34567777777888877     89999999987665  445555543   678899999999877766 56799999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-eEEEECCCCCeEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~  157 (434)
                      +.........|.+.|.++.+.-+....|      ++..+.++++|++..     ..+.++.+.... ..+.-+     ..
T Consensus       250 ~~r~~~TLsGHtdkVt~ak~~~~~~~vV------sgs~DRtiK~WDl~k-----~~C~kt~l~~S~cnDI~~~-----~~  313 (459)
T KOG0288|consen  250 SLRLRHTLSGHTDKVTAAKFKLSHSRVV------SGSADRTIKLWDLQK-----AYCSKTVLPGSQCNDIVCS-----IS  313 (459)
T ss_pred             chhhhhhhcccccceeeehhhcccccee------eccccchhhhhhhhh-----hheeccccccccccceEec-----ce
Confidence            8776677788888999888776532211      356678999999954     444444433221 122222     22


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---  234 (434)
                      ...+...|+..+.|.+         .+. .+...++-.|.|.++..+++|.++..  ...|..+.++|+++..+...   
T Consensus       314 ~~~SgH~DkkvRfwD~---------Rs~-~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  314 DVISGHFDKKVRFWDI---------RSA-DKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             eeeecccccceEEEec---------cCC-ceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeec
Confidence            3445556666655442         222 23333333679999999999999985  46677999999997766542   


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeC
Q 013871          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 ----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                          .....+.+.|||+|.|++.|+   .+|.|+||++.++++...+...    .++.++|+|.|.++++++.      +
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk------~  452 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK------Q  452 (459)
T ss_pred             cccccccccceeEECCCCceeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC------C
Confidence                234578899999999999998   7789999999999877666543    4778999999999999998      9


Q ss_pred             CcEEEEe
Q 013871          307 NGIKIFH  313 (434)
Q Consensus       307 ~~i~iw~  313 (434)
                      ..+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            9999994

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=8.4e-20  Score=185.08  Aligned_cols=240  Identities=16%  Similarity=0.242  Sum_probs=174.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------Cc-----------EEEEEeecCcCCCCCCeeeecCCCcE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GE-----------AVYQLFQKNMTKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~-----------~~~~~~~~~~~~~~~~~~~~S~d~~~   63 (434)
                      |.|+.|||||+|||+++     +|+.|.||.-..       |.           ++..+..|   ...+..+.||||+.+
T Consensus        72 v~CVR~S~dG~~lAsGS-----DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H---~~DV~Dv~Wsp~~~~  143 (942)
T KOG0973|consen   72 VNCVRFSPDGSYLASGS-----DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH---DSDVLDVNWSPDDSL  143 (942)
T ss_pred             eeEEEECCCCCeEeecc-----CcceEEEeeecccCCcccccccccccccceeeEEEEEecC---CCccceeccCCCccE
Confidence            78999999999999988     899999998762       11           34445443   366778999999999


Q ss_pred             EEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ec
Q 013871           64 ACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FF  140 (434)
Q Consensus        64 la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~  140 (434)
                      ||++ .|++|.||+...|........|..-|..+.|.|- +.++|.     .+.+.++++|++.++.   .....+  |-
T Consensus       144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~-Gky~AS-----qsdDrtikvwrt~dw~---i~k~It~pf~  214 (942)
T KOG0973|consen  144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI-GKYFAS-----QSDDRTLKVWRTSDWG---IEKSITKPFE  214 (942)
T ss_pred             EEEecccceEEEEccccceeeeeeecccccccceEECCc-cCeeee-----ecCCceEEEEEcccce---eeEeeccchh
Confidence            9998 4789999999999776777788888999999998 677774     4566799999987642   222221  11


Q ss_pred             ----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcC------C--
Q 013871          141 ----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS------G--  207 (434)
Q Consensus       141 ----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspd------g--  207 (434)
                          ..-...+.|||||.+|+.....     +.   +...+-+++- +.....+ -+.|.+++..+.|+|.      .  
T Consensus       215 ~~~~~T~f~RlSWSPDG~~las~nA~-----n~---~~~~~~IieR-~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGHHLASPNAV-----NG---GKSTIAIIER-GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             hCCCcceeeecccCCCcCeecchhhc-----cC---CcceeEEEec-CCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence                1233578999999998664322     11   2223344443 2222222 3456889999999972      1  


Q ss_pred             -------CEEEEEEccCCCeEEEEecc-cceeE---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          208 -------SEFAVVYGFMPASATIFNKK-CRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       208 -------~~~av~~g~~~~~v~l~d~~-~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                             .+.+++.|+.|+.+.||... ..+++   ++-...|++++|||||..|+.++   +||+|.+...+.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS---~DGtV~~i~Fee  356 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACS---LDGTVALIHFEE  356 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEe---cCCeEEEEEcch
Confidence                   12255579999999999884 45544   34578999999999999999998   778999998875

>PTZ00421 coronin; Provisional

Probab=99.85  E-value=1.9e-18  Score=172.07  Aligned_cols=238  Identities=11%  Similarity=0.158  Sum_probs=154.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-------------EEeecCcCCCCCCeeeecC-CCcEEEEec
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-------------QLFQKNMTKTTWPSIRFSS-DEAVACRMA   68 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-------------~~~~~~~~~~~~~~~~~S~-d~~~la~~~   68 (434)
                      ....+++|+..+++++     .+.....|+...|..+.             .+.+   |...+.+++|+| |+++|++++
T Consensus        24 ~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         24 TPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             ccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEe
Confidence            4456778866666555     34445566544433221             1222   446777999999 888888885


Q ss_pred             -CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871           69 -TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        69 -~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                       |++|++|++.....       ......|...|..+.|+|+....++.     .+.++.|+||++..   ++        
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS-----gs~DgtVrIWDl~t---g~--------  159 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS-----AGADMVVNVWDVER---GK--------  159 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE-----EeCCCEEEEEECCC---Ce--------
Confidence             67999999875321       11222344456777777764444442     24456677777643   11        


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                                    .+                     ..+   .        .+...|.+++|+|+|..|+  ++..|+.
T Consensus       160 --------------~~---------------------~~l---~--------~h~~~V~sla~spdG~lLa--tgs~Dg~  191 (493)
T PTZ00421        160 --------------AV---------------------EVI---K--------CHSDQITSLEWNLDGSLLC--TTSKDKK  191 (493)
T ss_pred             --------------EE---------------------EEE---c--------CCCCceEEEEEECCCCEEE--EecCCCE
Confidence                          00                     000   0        1256799999999999888  5788999


Q ss_pred             EEEEeccc-ceeEEe--CCcC-eeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCE-EEEEeeCC---CceEEEECCCC
Q 013871          221 ATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGK-QLGTTRAE---CSVTSEWSPDG  291 (434)
Q Consensus       221 v~l~d~~~-~~~~~~--~~~~-~~~i~~SP~g~~l~~~~~~-~~~g~i~iwd~~~~~-~i~~~~~~---~~~~~~wspdg  291 (434)
                      |++||++. ..+..+  |.+. ...+.|+|++..|+++|+. ..++.|.|||+++.. .+.....+   .+..+.|+||+
T Consensus       192 IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~  271 (493)
T PTZ00421        192 LNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT  271 (493)
T ss_pred             EEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence            99999974 445444  4433 4568899999888887754 357899999998753 34333222   33347899999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          292 RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       292 ~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      .+|++++..     |+.|++|++...
T Consensus       272 ~~L~lggkg-----Dg~Iriwdl~~~  292 (493)
T PTZ00421        272 NLLYIGSKG-----EGNIRCFELMNE  292 (493)
T ss_pred             CEEEEEEeC-----CCeEEEEEeeCC
Confidence            999998743     999999999543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.2e-19  Score=168.30  Aligned_cols=266  Identities=13%  Similarity=0.104  Sum_probs=212.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |.++.|+|...++++.-     ..++|.|||.++...+++|.-..   ..+++..|-+--+++++++|+ .|+||+.+..
T Consensus        16 VKsVd~HPtePw~la~L-----ynG~V~IWnyetqtmVksfeV~~---~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen   16 VKSVDFHPTEPWILAAL-----YNGDVQIWNYETQTMVKSFEVSE---VPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             eeeeecCCCCceEEEee-----ecCeeEEEecccceeeeeeeecc---cchhhheeeeccceEEEecCCceEEEEecccc
Confidence            78999999999999876     67999999999999999997754   677788888888899999765 9999999998


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ++.....-|.+-|++++.+|. .+++..     ...+..|++|+..+.  =......+.|..-+.++.++|....-  .+
T Consensus        88 ekV~~FeAH~DyIR~iavHPt-~P~vLt-----sSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~nt--Fa  157 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPT-LPYVLT-----SSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNT--FA  157 (794)
T ss_pred             eeeEEeeccccceeeeeecCC-CCeEEe-----cCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccc--ee
Confidence            887777788889999999999 566553     455679999999763  34555667788889999999987754  34


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ceeEEeCC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~~~~~~~  236 (434)
                      +...|.+.+.|       .+   |...+.++++ ++..|+++.+-+-|..-.+|+|..|..+++||-.+   .++.+-|.
T Consensus       158 S~sLDrTVKVW-------sl---gs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt  227 (794)
T KOG0276|consen  158 SASLDRTVKVW-------SL---GSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT  227 (794)
T ss_pred             eeeccccEEEE-------Ec---CCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc
Confidence            55578887754       33   3334445554 57899999999988777777999999999999864   33444488


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEE
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas  298 (434)
                      ..++.++|+|.=-++++|+   .||+|+||+..+.++..++.-  ..+.+++-.++++.++.|.
T Consensus       228 ~Nvs~v~fhp~lpiiisgs---EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~  288 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGS---EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGF  288 (794)
T ss_pred             ccceEEEecCCCcEEEEec---CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEec
Confidence            9999999999999999998   789999999999877665543  3677777778877777776

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=5e-19  Score=175.26  Aligned_cols=281  Identities=11%  Similarity=0.109  Sum_probs=222.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~   80 (434)
                      |..|+|+|.--+++|.-     ..+.|++||-.=|.++..|..+.   ..|+.+.|.|+.-++++++|+ .|+||+....
T Consensus        12 vKglsFHP~rPwILtsl-----HsG~IQlWDYRM~tli~rFdeHd---GpVRgv~FH~~qplFVSGGDDykIkVWnYk~r   83 (1202)
T KOG0292|consen   12 VKGLSFHPKRPWILTSL-----HSGVIQLWDYRMGTLIDRFDEHD---GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR   83 (1202)
T ss_pred             ccceecCCCCCEEEEee-----cCceeeeehhhhhhHHhhhhccC---CccceeeecCCCCeEEecCCccEEEEEecccc
Confidence            57899999999999876     67899999999999999998765   789999999999999999876 9999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|.+-|+.+.|++. -+-|.     +...+.+|+||+..+   +..++..++|...+.+..|+|....|   +
T Consensus        84 rclftL~GHlDYVRt~~FHhe-yPWIl-----SASDDQTIrIWNwqs---r~~iavltGHnHYVMcAqFhptEDlI---V  151 (1202)
T KOG0292|consen   84 RCLFTLLGHLDYVRTVFFHHE-YPWIL-----SASDDQTIRIWNWQS---RKCIAVLTGHNHYVMCAQFHPTEDLI---V  151 (1202)
T ss_pred             eehhhhccccceeEEeeccCC-CceEE-----EccCCCeEEEEeccC---CceEEEEecCceEEEeeccCCccceE---E
Confidence            766677788899999999987 34333     235567999999998   89999999999999999999987753   3


Q ss_pred             EecccccCceeecceeEE------------------EEeeCCcceeeee--c-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          161 QSDVDKTNQSYYGESKLN------------------YLTTDGTHEGLVP--L-RKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~------------------~l~~~~~~~~~v~--l-~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      +...|++.+.|.-.. |-                  ..++.|..+..+.  + .+...|+-++|+|.-..|+  +|..|.
T Consensus       152 SaSLDQTVRVWDisG-LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliV--SG~DDR  228 (1202)
T KOG0292|consen  152 SASLDQTVRVWDISG-LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIV--SGADDR  228 (1202)
T ss_pred             EecccceEEEEeecc-hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEE--ecCCcc
Confidence            445788888774210 00                  0112232232222  2 2567889999999876666  799999


Q ss_pred             eEEEEecccceeEE-----eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCC
Q 013871          220 SATIFNKKCRPILE-----LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGR  292 (434)
Q Consensus       220 ~v~l~d~~~~~~~~-----~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~  292 (434)
                      .|++|.+......+     -|...+.++-|+|+-.+|++.+   .|+.|+|||+...+.+.++..  ...+.++-+|...
T Consensus       229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSns---EDksirVwDm~kRt~v~tfrrendRFW~laahP~lN  305 (1202)
T KOG0292|consen  229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNS---EDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN  305 (1202)
T ss_pred             eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecC---CCccEEEEecccccceeeeeccCCeEEEEEecCCcc
Confidence            99999875333222     2788999999999999999988   778999999999998888844  4667799999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .|+.|.       |+++.+|.++
T Consensus       306 LfAAgH-------DsGm~VFkle  321 (1202)
T KOG0292|consen  306 LFAAGH-------DSGMIVFKLE  321 (1202)
T ss_pred             eeeeec-------CCceEEEEEc
Confidence            887665       8999999885

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.2e-18  Score=151.56  Aligned_cols=217  Identities=18%  Similarity=0.257  Sum_probs=163.7

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee----eecccceeEEEECCCCCeEEEEEE
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR----SFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~----~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...+.+.+..++|+|..+..+|     +.+.+..|+||+...   ......+    .+|+..+..++|+|.|++|+.   
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilA-----scg~Dk~vriw~~~~---~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~---   78 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILA-----SCGTDKAVRIWSTSS---GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLAS---   78 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEE-----eecCCceEEEEecCC---CCcEEEEEeccccchheeeeeeecCCCcEEEE---
Confidence            3455667999999998544555     467788999999974   1222222    357888899999999997554   


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------cceeEEe
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------CRPILEL  234 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~------~~~~~~~  234 (434)
                      ...|.+..       ||. ...+.+++.-.|+ ++..|.+++||++|++||  +++.|..|.||...      +..+.+-
T Consensus        79 aSFD~t~~-------Iw~-k~~~efecv~~lEGHEnEVK~Vaws~sG~~LA--TCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   79 ASFDATVV-------IWK-KEDGEFECVATLEGHENEVKCVAWSASGNYLA--TCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             eeccceEE-------Eee-cCCCceeEEeeeeccccceeEEEEcCCCCEEE--EeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            22444433       332 1245556666665 588999999999999999  56778999999774      2334444


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                      |...+..+.|+|.-.+|+++++||   +|++|.-.   +.+++.++.+|.  +..++|+|.|..|++++.      |+++
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv  219 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTV  219 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------Ccce
Confidence            889999999999999999999887   99999866   448899999884  445999999999999999      9999


Q ss_pred             EEEeecCceeeeeecccceeeEEE
Q 013871          310 KIFHHNGSLFFKKMFDKLFQAEWK  333 (434)
Q Consensus       310 ~iw~~~g~~~~~~~~~~~~~~~w~  333 (434)
                      +||.+- .-+...+...+|.+.|.
T Consensus       220 ~Iw~~~-~~~~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  220 SIWRLY-TDLSGMHSRALYDVPWD  242 (312)
T ss_pred             Eeeeec-cCcchhcccceEeeeec
Confidence            999954 22233445679999999

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.6e-18  Score=151.82  Aligned_cols=260  Identities=15%  Similarity=0.212  Sum_probs=186.5

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.++.|++||.+|+++. |+.|++||..+...  ...+...  ++..+.|.-...  .+++.  +...+..|+..++-
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~--~~ti~skkyG~~~~~Fth~~~--~~i~s--Stk~d~tIryLsl~   88 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ--VKTINSKKYGVDLACFTHHSN--TVIHS--STKEDDTIRYLSLH   88 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCce--eeEeecccccccEEEEecCCc--eEEEc--cCCCCCceEEEEee
Confidence            5667999999999999874 56999999987543  3334333  455544443211  22222  22455789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      +   ++-++-..+|+..+..+.-+|-++..+   ++..|++.+       ||.+.+... ...+.+   ..-.-++|.|+
T Consensus        89 d---NkylRYF~GH~~~V~sL~~sP~~d~Fl---S~S~D~tvr-------LWDlR~~~c-qg~l~~---~~~pi~AfDp~  151 (311)
T KOG1446|consen   89 D---NKYLRYFPGHKKRVNSLSVSPKDDTFL---SSSLDKTVR-------LWDLRVKKC-QGLLNL---SGRPIAAFDPE  151 (311)
T ss_pred             c---CceEEEcCCCCceEEEEEecCCCCeEE---ecccCCeEE-------eeEecCCCC-ceEEec---CCCcceeECCC
Confidence            8   889999999999999999999887643   334666665       455543222 222222   22235899999


Q ss_pred             CCEEEEEEccCCCeEEEEecc---cceeEEe--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871          207 GSEFAVVYGFMPASATIFNKK---CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~---~~~~~~~--~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      |-.||++.+.  ..|+|||++   ..+..+|  .   ....+.|.|||||++|+++.   ..+.+++.|.=+|..+.++.
T Consensus       152 GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs  226 (311)
T KOG1446|consen  152 GLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFS  226 (311)
T ss_pred             CcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEe
Confidence            9999975444  399999997   3444444  3   56778999999999999998   44699999999999888887


Q ss_pred             CC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcCCCCCCCCc
Q 013871          279 AE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       279 ~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      .+     ......|+|||+++++++.      |+.|.||++ +|..+...   +.....++.|+|.-.-..++.
T Consensus       227 ~~~~~~~~~~~a~ftPds~Fvl~gs~------dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~  294 (311)
T KOG1446|consen  227 GYPNAGNLPLSATFTPDSKFVLSGSD------DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS  294 (311)
T ss_pred             eccCCCCcceeEEECCCCcEEEEecC------CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence            65     2245899999999999999      999999999 45554443   345678888999876666654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.8e-19  Score=175.80  Aligned_cols=255  Identities=16%  Similarity=0.207  Sum_probs=181.0

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+.+.+.|.|||.+++++ .++.|++|+..+. +.......+.+.|.+++..-  + .++.     +...+.|.+|.+++
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~-~f~~-----~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--N-HFLT-----GSEQNTVLRYKFPS   85 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--c-ceEE-----eeccceEEEeeCCC
Confidence            556689999999999887 5679999998775 33222222334455444332  2 2221     34567899999998


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                      .   ..-..+.-|......++++.+|+.++...   .|         ..+.+++........+.-.++++|.++.|+|++
T Consensus        86 ~---~~~~iL~Rftlp~r~~~v~g~g~~iaags---dD---------~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   86 G---EEDTILARFTLPIRDLAVSGSGKMIAAGS---DD---------TAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             C---CccceeeeeeccceEEEEecCCcEEEeec---Cc---------eeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            4   44434444556777889999999876542   11         134555555544455555679999999999999


Q ss_pred             CEEEEEEccCCCeEEEEeccccee-EE---------eC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871          208 SEFAVVYGFMPASATIFNKKCRPI-LE---------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~~~-~~---------~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      ..+|++++  +|+|++||+....+ +.         +. ...++.++|+|+|..+++.+   .++.|.+|+..+++....
T Consensus       151 ~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~  225 (933)
T KOG1274|consen  151 NFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFK  225 (933)
T ss_pred             CEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceehee
Confidence            99998644  78999999964332 11         22 45667899999988777777   455999999999977666


Q ss_pred             eeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013871          277 TRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  339 (434)
Q Consensus       277 ~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~  339 (434)
                      +...    ..+.++|||.|.|||+++.      ||.|-|||++.... +.....+.+.+|.|....+
T Consensus       226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~------~g~I~vWnv~t~~~-~~~~~~Vc~~aw~p~~n~i  285 (933)
T KOG1274|consen  226 LRDKLSSSKFSDLQWSPNGKYIAASTL------DGQILVWNVDTHER-HEFKRAVCCEAWKPNANAI  285 (933)
T ss_pred             ecccccccceEEEEEcCCCcEEeeecc------CCcEEEEecccchh-ccccceeEEEecCCCCCee
Confidence            6432    3556999999999999999      99999999987222 2344579999999988743

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.8e-19  Score=172.55  Aligned_cols=239  Identities=16%  Similarity=0.217  Sum_probs=190.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |+++.|+++|++|++..     .++.|.|||+.+.+.++.+..+  |...|-+++|.  +..+.++ .++.|.++|+...
T Consensus       220 vtSv~ws~~G~~LavG~-----~~g~v~iwD~~~~k~~~~~~~~--h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~  290 (484)
T KOG0305|consen  220 VTSVKWSPDGSHLAVGT-----SDGTVQIWDVKEQKKTRTLRGS--HASRVGSLAWN--SSVLSSGSRDGKILNHDVRIS  290 (484)
T ss_pred             eEEEEECCCCCEEEEee-----cCCeEEEEehhhccccccccCC--cCceeEEEecc--CceEEEecCCCcEEEEEEecc
Confidence            78999999999999988     8999999999998888887763  33778899998  6666666 4679999998765


Q ss_pred             CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ..... ...|.+.|..++|+++ +..+|     ++|.++.+.||+...   ..++.....|++.+..+.|.|--..||..
T Consensus       291 ~~~~~~~~~H~qeVCgLkws~d-~~~lA-----SGgnDN~~~Iwd~~~---~~p~~~~~~H~aAVKA~awcP~q~~lLAs  361 (484)
T KOG0305|consen  291 QHVVSTLQGHRQEVCGLKWSPD-GNQLA-----SGGNDNVVFIWDGLS---PEPKFTFTEHTAAVKALAWCPWQSGLLAT  361 (484)
T ss_pred             hhhhhhhhcccceeeeeEECCC-CCeec-----cCCCccceEeccCCC---ccccEEEeccceeeeEeeeCCCccCceEE
Confidence            43222 5567778999999999 56666     688999999999966   78888999999999999999987777766


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~  236 (434)
                      .....|...+.|         ++..+ ...-.+.....|.++.|++..++|+...|+.+..|+||+.- -..+..+  |.
T Consensus       362 GGGs~D~~i~fw---------n~~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~  431 (484)
T KOG0305|consen  362 GGGSADRCIKFW---------NTNTG-ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT  431 (484)
T ss_pred             cCCCcccEEEEE---------EcCCC-cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc
Confidence            555456555443         33333 33334455789999999999999999999999999999874 3334444  88


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ..|..+++||||..+++|+   .|.+++||++-+.
T Consensus       432 ~RVl~la~SPdg~~i~t~a---~DETlrfw~~f~~  463 (484)
T KOG0305|consen  432 SRVLYLALSPDGETIVTGA---ADETLRFWNLFDE  463 (484)
T ss_pred             ceeEEEEECCCCCEEEEec---ccCcEEeccccCC
Confidence            8999999999999999999   4459999997653

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.4e-19  Score=172.36  Aligned_cols=299  Identities=17%  Similarity=0.217  Sum_probs=197.2

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE--EecCCeEEEEeCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC--RMATNEIQFFDTT   78 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la--~~~~~~i~v~~~~   78 (434)
                      +|++|+..|.|.+|++++     .|++|+||.+.||.|++++...    ..+.|++|+|.+..++  .+.++.+.|-+..
T Consensus       402 ~Vr~iSvdp~G~wlasGs-----dDGtvriWEi~TgRcvr~~~~d----~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGS-----DDGTVRIWEIATGRCVRTVQFD----SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eEEEEEecCCcceeeecC-----CCCcEEEEEeecceEEEEEeec----ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            589999999999999988     8999999999999999998876    5788999999886544  4445555555532


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -+..... ....+-...   .|.           ....++.+-.|.-....+ ...++..--+...+.++.|+.+|.+|+
T Consensus       473 ~G~~~e~-~~t~ell~~---~~~-----------~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla  537 (733)
T KOG0650|consen  473 FGDRLEV-GPTKELLAS---APN-----------ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA  537 (733)
T ss_pred             ccchhhh-cchhhhhhc---CCC-----------ccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence            2211110 000000000   000           011122334444332110 112333334556778999999999987


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-  234 (434)
                      ++..   +...++.+    ||.+.   ......++. ..|.|..+.|+|...+|+|++.   ..|+|||+. +..+..+ 
T Consensus       538 tV~~---~~~~~~Vl----iHQLS---K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~  604 (733)
T KOG0650|consen  538 TVMP---DSGNKSVL----IHQLS---KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL  604 (733)
T ss_pred             Eecc---CCCcceEE----EEecc---cccccCchhhcCCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh
Confidence            7643   23333221    44442   223334554 3689999999999999998654   489999984 5555555 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~  310 (434)
                       +...+.+++.+|.|..|+++++++   .|..+|++-. +...++..|  .+..+++++.-..|++|+.      |+++.
T Consensus       605 tg~kwiS~msihp~GDnli~gs~d~---k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~  675 (733)
T KOG0650|consen  605 TGSKWISSMSIHPNGDNLILGSYDK---KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVI  675 (733)
T ss_pred             cCCeeeeeeeecCCCCeEEEecCCC---eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEE
Confidence             345678899999999999999554   9999998743 555555555  5566999999999999999      99999


Q ss_pred             EEee---c----Cceeeee-----ec----ccceeeEEEcCCCCCCCCchh
Q 013871          311 IFHH---N----GSLFFKK-----MF----DKLFQAEWKPVSPDKFGDISE  345 (434)
Q Consensus       311 iw~~---~----g~~~~~~-----~~----~~~~~~~w~p~~~~~~~~~~~  345 (434)
                      |++-   +    .-++.-.     +.    -.+.++.|+|+.+.||+++.+
T Consensus       676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd  726 (733)
T KOG0650|consen  676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGAD  726 (733)
T ss_pred             EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCC
Confidence            9983   1    1111111     11    137788899999999998643

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=2.3e-17  Score=165.40  Aligned_cols=265  Identities=10%  Similarity=0.159  Sum_probs=170.5

Q ss_pred             ecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc
Q 013871            7 CLRVGLIIQT-FQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG   83 (434)
Q Consensus         7 fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~   83 (434)
                      ++..++|++. |....+..++.|+||++.....+..+.++   ...+.+++|+|+ +.+||+++ |++|+||++......
T Consensus        34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH---~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGH---TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCC---CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            3445566554 44344556788999998777777777654   367779999996 78888874 679999998753210


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871           84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                      .         ..+                                  ..++.....|...+..+.|+|++..+++.++  
T Consensus       111 ~---------~~i----------------------------------~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS--  145 (568)
T PTZ00420        111 V---------KEI----------------------------------KDPQCILKGHKKKISIIDWNPMNYYIMCSSG--  145 (568)
T ss_pred             c---------ccc----------------------------------ccceEEeecCCCcEEEEEECCCCCeEEEEEe--
Confidence            0         000                                  0111122234456678999999987655433  


Q ss_pred             ccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCee
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYN  240 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~  240 (434)
                      .|.+.+.       |.+  ... .....+.+...|.+++|+|+|..|+  +++.++.++|||++.. .+.++  |.+.+.
T Consensus       146 ~DgtIrI-------WDl--~tg-~~~~~i~~~~~V~SlswspdG~lLa--t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~  213 (568)
T PTZ00420        146 FDSFVNI-------WDI--ENE-KRAFQINMPKKLSSLKWNIKGNLLS--GTCVGKHMHIIDPRKQEIASSFHIHDGGKN  213 (568)
T ss_pred             CCCeEEE-------EEC--CCC-cEEEEEecCCcEEEEEECCCCCEEE--EEecCCEEEEEECCCCcEEEEEecccCCce
Confidence            3444443       322  222 2222333457899999999999887  4667899999999744 44444  555543


Q ss_pred             E-----EEECCCCCeEEEEecCCC-CCeEEEEEccC-CEEEEEeeCC---CceEEEEC-CCCCEEEEEEcCCceeeCCcE
Q 013871          241 T-----VRWNPKGKFLCLAGFGNL-PGDMAFWDYVD-GKQLGTTRAE---CSVTSEWS-PDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       241 ~-----i~~SP~g~~l~~~~~~~~-~g~i~iwd~~~-~~~i~~~~~~---~~~~~~ws-pdg~~l~tas~~prl~~D~~i  309 (434)
                      +     ..|++++.+|+++|++.. ++.|.|||+++ .+.+......   .+....|. ++|.++++|+.      |+.|
T Consensus       214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG------D~tI  287 (568)
T PTZ00420        214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG------DGNC  287 (568)
T ss_pred             eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC------CCeE
Confidence            3     235799999999887642 35899999985 4555544332   33334554 45889999988      9999


Q ss_pred             EEEeecCceeeee----ecccceeeEEEcCCC
Q 013871          310 KIFHHNGSLFFKK----MFDKLFQAEWKPVSP  337 (434)
Q Consensus       310 ~iw~~~g~~~~~~----~~~~~~~~~w~p~~~  337 (434)
                      ++|++....++..    ....+..++|.|.-.
T Consensus       288 r~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        288 RYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEccCCcEEeecccccCCCccceEEccccc
Confidence            9999965433322    123466778888654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=9.6e-19  Score=157.78  Aligned_cols=262  Identities=14%  Similarity=0.161  Sum_probs=194.6

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+..+-|.|+.-.+++++ +.+|++||..+.+.....+.|...+.+++++..+ ..++..     ..+-.+.+|+....
T Consensus       109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tc-----SsDl~~~LWd~~~~  182 (406)
T KOG0295|consen  109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATC-----SSDLSAKLWDFDTF  182 (406)
T ss_pred             cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEec-----CCccchhheeHHHH
Confidence            4555778899999998885 5699999999887766678888889999999884 444432     22234899998764


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~  208 (434)
                        .+.+.....+...+.++.+-|.|.+|+.   ...|.+.+.|.-.++ |.+.+...        +..-|+-++.+.||.
T Consensus       183 --~~c~ks~~gh~h~vS~V~f~P~gd~ilS---~srD~tik~We~~tg-~cv~t~~~--------h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  183 --FRCIKSLIGHEHGVSSVFFLPLGDHILS---CSRDNTIKAWECDTG-YCVKTFPG--------HSEWVRMVRVNQDGT  248 (406)
T ss_pred             --HHHHHHhcCcccceeeEEEEecCCeeee---cccccceeEEecccc-eeEEeccC--------chHhEEEEEecCCee
Confidence              4566667778888889999999988654   446777776643322 32222222        356889999999999


Q ss_pred             EEEEEEccCCCeEEEEeccc---ceeEEeCCcCeeEEEECCC---------------CCeEEEEecCCCCCeEEEEEccC
Q 013871          209 EFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~---~~~~~~~~~~~~~i~~SP~---------------g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .||  +++.+.++++|-+..   ......|..++.+++|-|.               |+++.+++   -|++|++||+.+
T Consensus       249 i~A--s~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDktIk~wdv~t  323 (406)
T KOG0295|consen  249 IIA--SCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDKTIKIWDVST  323 (406)
T ss_pred             EEE--ecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccceEEEEeccC
Confidence            998  688889999997753   4555668899999999874               24666666   457999999999


Q ss_pred             CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeeccc--ceeeEEEcCCCCCCCC
Q 013871          271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFDK--LFQAEWKPVSPDKFGD  342 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~~--~~~~~w~p~~~~~~~~  342 (434)
                      +.++.++.+|  .+..++|+|.|+||+++..      |++++|||+. ++++...+..+  +..+.+.-..+++.+.
T Consensus       324 g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTG  394 (406)
T KOG0295|consen  324 GMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTG  394 (406)
T ss_pred             CeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEec
Confidence            9999999988  5556999999999999999      9999999995 45555554443  3455555555544443

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.83  E-value=1.9e-19  Score=154.71  Aligned_cols=273  Identities=16%  Similarity=0.238  Sum_probs=201.7

Q ss_pred             cceEEec---CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871            2 LLLLTCL---RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fS---P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |..|+||   |+|-||++.+     .|++=.+-+-.+|.-+.+|.++..  ..| ......+-...|++. |-+-+|||.
T Consensus        17 vvdl~~s~itp~g~flisa~-----kd~~pmlr~g~tgdwigtfeghkg--avw-~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen   17 VVDLAFSPITPDGYFLISAS-----KDGKPMLRNGDTGDWIGTFEGHKG--AVW-SATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             eeEEeccCCCCCceEEEEec-----cCCCchhccCCCCCcEEeeeccCc--cee-eeecCchhhhhhhhcccchhhhhhh
Confidence            4567887   6899999999     677777777789999999998764  556 445555666667664 448999997


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -....... -.|..-|+.++|+.+...++      +++....+|||++...  ..+......+...+..+.|-...+.|+
T Consensus        89 ~tgdelhs-f~hkhivk~~af~~ds~~ll------tgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iL  159 (334)
T KOG0278|consen   89 VTGDELHS-FEHKHIVKAVAFSQDSNYLL------TGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCIL  159 (334)
T ss_pred             hhhhhhhh-hhhhheeeeEEecccchhhh------ccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEE
Confidence            65432211 11233478899999854444      3567778899998664  566666777888888888987777654


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-C
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-G  235 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~  235 (434)
                      ..   ..|++.+.|       ...  .+ .....|..+.+|.++..++||+++.+.+|.   .|.+||.+. ..+.++ -
T Consensus       160 SS---add~tVRLW-------D~r--Tg-t~v~sL~~~s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~  223 (334)
T KOG0278|consen  160 SS---ADDKTVRLW-------DHR--TG-TEVQSLEFNSPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKM  223 (334)
T ss_pred             ee---ccCCceEEE-------Eec--cC-cEEEEEecCCCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccC
Confidence            43   255666544       322  22 222334447899999999999999987765   899999864 555555 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ...|++...+|+..+++.||   .++.++.||..+++.+..+ .+|  .+-++.|||||+..++++.      |++|+||
T Consensus       224 P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE------DGTirlW  294 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE------DGTIRLW  294 (334)
T ss_pred             ccccccccccCCCceEEecC---cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC------CceEEEE
Confidence            56788999999998888887   6789999999999988886 444  4455999999999999999      9999999


Q ss_pred             eecC
Q 013871          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      ..+-
T Consensus       295 Qt~~  298 (334)
T KOG0278|consen  295 QTTP  298 (334)
T ss_pred             EecC
Confidence            9753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.83  E-value=3.8e-18  Score=150.58  Aligned_cols=263  Identities=14%  Similarity=0.142  Sum_probs=177.1

Q ss_pred             cceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~   78 (434)
                      |.+|+|||...+|+ ..+     .|++|++|+++. |..+..-...  +...+.+++|+.||..++.+ .|+++++||+.
T Consensus        30 IS~l~FSP~~~~~~~A~S-----WD~tVR~wevq~~g~~~~ka~~~--~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGS-----WDGTVRIWEVQNSGQLVPKAQQS--HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             hheeEeccccCceEEecc-----cCCceEEEEEecCCcccchhhhc--cCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            78999999655555 444     899999999976 5544432222  34677899999999877776 68899999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      +... .....|...|+.+.|-+.....+.+    ++..+.+++.||...   ..++.+..+.. .+..+.  - -.-+++
T Consensus       103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~----TGSWDKTlKfWD~R~---~~pv~t~~LPe-RvYa~D--v-~~pm~v  170 (347)
T KOG0647|consen  103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLV----TGSWDKTLKFWDTRS---SNPVATLQLPE-RVYAAD--V-LYPMAV  170 (347)
T ss_pred             CCCe-eeeeecccceeEEEEecCCCcceeE----ecccccceeecccCC---CCeeeeeeccc-eeeehh--c-cCceeE
Confidence            8653 5566778889999999875422221    456778999999987   67777665432 111110  0 012333


Q ss_pred             EEEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce----e
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP----I  231 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~----~  231 (434)
                      ++..  ++         .|..+.+.+.  ...++....+-.+.+++..+|..-+++  |...|++.+..+.. ++    .
T Consensus       171 Vata--~r---------~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  171 VATA--ER---------HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             EEec--CC---------cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCcee
Confidence            3222  11         2222222111  111222222557789999998888875  78888998887643 22    2


Q ss_pred             EEeCC---------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          232 LELGS---------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       232 ~~~~~---------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      +..|.         -.||+|+|+|.-..|+++|   .||++.|||.+....+...+.+  .++.+.|+.+|.+++-|..
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaG---sDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAG---SDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEec---CCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence            22232         2578999999999999999   6789999998877666654443  6777999999999999887

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.82  E-value=8.2e-18  Score=151.90  Aligned_cols=271  Identities=14%  Similarity=0.157  Sum_probs=199.1

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      +.+|..+   ...+-++.-+|+.+++|+++ |+.-++|+..+.........|.+.|.++.||-+ +.++|     +++..
T Consensus        57 ~~tF~~H---~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshd-gtlLA-----TGdms  127 (399)
T KOG0296|consen   57 LVTFDKH---TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHD-GTLLA-----TGDMS  127 (399)
T ss_pred             eeehhhc---CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccC-ceEEE-----ecCCC
Confidence            4566554   36666899999999999985 679999999987766667778889999999998 66776     47888


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCC
Q 013871          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP  197 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~  197 (434)
                      +.|+||...+   +........--.+..-|+|+|.+..|+..+   .|       |  .+|.+.+.....+.+-..+..+
T Consensus       128 G~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~---~D-------G--svWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  128 GKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TD-------G--SVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeec---CC-------C--cEEEEECCCcceeeEecCCCCC
Confidence            9999999987   555554444456777899999877654421   11       2  2455555554466666667889


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeC-----------------------------------------
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG-----------------------------------------  235 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~-----------------------------------------  235 (434)
                      +.+=.|.|||++++  +++.+++|++||.+ +.+++.+.                                         
T Consensus       193 ct~G~f~pdGKr~~--tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~  270 (399)
T KOG0296|consen  193 CTCGEFIPDGKRIL--TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC  270 (399)
T ss_pred             cccccccCCCceEE--EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence            99999999999999  57889999999985 44444321                                         


Q ss_pred             ------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013871          236 ------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       236 ------------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~pr  302 (434)
                                  ...+.++.+.|...-|-++.-|.++|+|.|||+...+....+.+. .++.+.|-+ ..+|++++.   
T Consensus       271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~---  346 (399)
T KOG0296|consen  271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA---  346 (399)
T ss_pred             cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc---
Confidence                        001122333343332222222338899999999988777777765 677799999 789999999   


Q ss_pred             eeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          303 LQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       303 l~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                         |+.|++||. +|++++..  |...++++...|+...+++.
T Consensus       347 ---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~  386 (399)
T KOG0296|consen  347 ---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV  386 (399)
T ss_pred             ---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence               999999998 78887665  67789999999998777664

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=7.9e-18  Score=164.34  Aligned_cols=306  Identities=13%  Similarity=0.160  Sum_probs=225.4

Q ss_pred             ceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCC-CcE------EEEEeecCcCCCCCCeeeecCCCcEEEEecCCeE
Q 013871            3 LLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTET-GEA------VYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEI   72 (434)
Q Consensus         3 ~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~-g~~------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i   72 (434)
                      .++++-|.+.   -|++.      .+..+.+|.++. +..      +..+.- ..|+..++.+++|.|...++++.+++|
T Consensus       324 ks~dv~~~~~~~~~lv~l------~nNtv~~ysl~~s~~~~p~~~~~~~i~~-~GHR~dVRsl~vS~d~~~~~Sga~~Si  396 (888)
T KOG0306|consen  324 KSFDVTPSGGTENTLVLL------ANNTVEWYSLENSGKTSPEADRTSNIEI-GGHRSDVRSLCVSSDSILLASGAGESI  396 (888)
T ss_pred             eEEEEEecCCcceeEEEe------ecCceEEEEeccCCCCCccccccceeee-ccchhheeEEEeecCceeeeecCCCcE
Confidence            3455555543   34442      357788887754 221      222221 225588999999999999999999999


Q ss_pred             EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      .||+......  ..++...-+-...|-|+ +..|.+     +...|.+.+|++.+   ...+-+...|.+.+-.+.-+||
T Consensus       397 kiWn~~t~kc--iRTi~~~y~l~~~Fvpg-d~~Iv~-----G~k~Gel~vfdlaS---~~l~Eti~AHdgaIWsi~~~pD  465 (888)
T KOG0306|consen  397 KIWNRDTLKC--IRTITCGYILASKFVPG-DRYIVL-----GTKNGELQVFDLAS---ASLVETIRAHDGAIWSISLSPD  465 (888)
T ss_pred             EEEEccCcce--eEEeccccEEEEEecCC-CceEEE-----eccCCceEEEEeeh---hhhhhhhhccccceeeeeecCC
Confidence            9999987543  34555556667778887 444432     35567899999987   5666666788888899999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      ++..+.   ...|++.+.|.-+   +..+..|.....+.      ++-+..|.++.+||||+++||  +--|+++.+|-+
T Consensus       466 ~~g~vT---~saDktVkfWdf~---l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV--sLLdnTVkVyfl  537 (888)
T KOG0306|consen  466 NKGFVT---GSADKTVKFWDFK---LVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV--SLLDNTVKVYFL  537 (888)
T ss_pred             CCceEE---ecCCcEEEEEeEE---EEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE--EeccCeEEEEEe
Confidence            998543   3478999887521   11222333222222      333678999999999999996  778899999988


Q ss_pred             ccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC
Q 013871          227 KCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       227 ~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~p  301 (434)
                      ..-..+ ++  |.-||.|+..|||++++++++.|   .+|+||-++=|.+-..+-+|  .++.+.|-|+...|.+++.  
T Consensus       538 DtlKFflsLYGHkLPV~smDIS~DSklivTgSAD---KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gK--  612 (888)
T KOG0306|consen  538 DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSAD---KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGK--  612 (888)
T ss_pred             cceeeeeeecccccceeEEeccCCcCeEEeccCC---CceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecC--
Confidence            755443 33  78999999999999999999955   59999999989888888776  5678999999999999999  


Q ss_pred             ceeeCCcEEEEeecCc-e--eeeeecccceeeEEEcCCCCCCCCc
Q 013871          302 RLQIDNGIKIFHHNGS-L--FFKKMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~-~--~~~~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                          |+.||-||-..- +  ....+..++|+++-.|.+..+++..
T Consensus       613 ----D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  613 ----DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             ----cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence                999999985432 2  2334667999999999999988875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.82  E-value=9.4e-20  Score=163.23  Aligned_cols=249  Identities=13%  Similarity=0.204  Sum_probs=174.1

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      .|++|+|||..+.++++.+.++.   ..+.|++|  |++.+++++ |.+|+|||.++.+.....-.|.+.|-.+.|+.+ 
T Consensus       215 rDnTikiWD~n~~~c~~~L~GHt---GSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-  288 (499)
T KOG0281|consen  215 RDNTIKIWDKNSLECLKILTGHT---GSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-  288 (499)
T ss_pred             ccCceEEeccccHHHHHhhhcCC---CcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-
Confidence            78999999999999998888764   67778887  778999885 569999999998765555667788888888853 


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                       .++.      ...+..+.+|++...+.......+-+|.+.+..+.|+..  +   +.+...|.+.+.|...+ .+++.+
T Consensus       289 -~mvt------cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k--y---IVsASgDRTikvW~~st-~efvRt  355 (499)
T KOG0281|consen  289 -YMVT------CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--Y---IVSASGDRTIKVWSTST-CEFVRT  355 (499)
T ss_pred             -EEEE------ecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc--e---EEEecCCceEEEEeccc-eeeehh
Confidence             3332      245678999999763211112234467777777777643  3   33344678888775543 244443


Q ss_pred             CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE---EeCCcCeeEEEECCCCCeEEEEecCCC
Q 013871          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      ..++        ...|-++++.  | .|+| +|+.|.+|++||+.+....   +-|..-+.++.|.  .+.|++|+   .
T Consensus       356 l~gH--------kRGIAClQYr--~-rlvV-SGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGa---Y  418 (499)
T KOG0281|consen  356 LNGH--------KRGIACLQYR--D-RLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGA---Y  418 (499)
T ss_pred             hhcc--------cccceehhcc--C-eEEE-ecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeecc---c
Confidence            3333        5567777764  4 3444 7999999999999865432   3377889999995  57889998   5


Q ss_pred             CCeEEEEEccCCEE---------EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          260 PGDMAFWDYVDGKQ---------LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       260 ~g~i~iwd~~~~~~---------i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ||+|+|||+..+..         +.+...|  .+..+.|  |...|++++.      |.+|.|||+..
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssH------ddtILiWdFl~  478 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSH------DDTILIWDFLN  478 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccC------CCeEEEEEcCC
Confidence            67999999986532         2222223  2333555  6678888888      99999999854

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.82  E-value=1.5e-17  Score=150.84  Aligned_cols=269  Identities=14%  Similarity=0.246  Sum_probs=190.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCc--EEEEe-cCCeEEEEeCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEA--VACRM-ATNEIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~--~la~~-~~~~i~v~~~~   78 (434)
                      .++.-.  +++++|.+     .|+.++||| ..|++..++.++.   ..+..+.|- +|..  .|+++ .|.++++|..+
T Consensus       109 Ssv~~~--~~~Iltgs-----YDg~~riWd-~~Gk~~~~~~Ght---~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~  177 (423)
T KOG0313|consen  109 SSVKGA--SKWILTGS-----YDGTSRIWD-LKGKSIKTIVGHT---GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN  177 (423)
T ss_pred             hhhccc--CceEEEee-----cCCeeEEEe-cCCceEEEEecCC---cceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence            344444  78999988     899999999 5688888888764   566556663 3433  45555 56799999987


Q ss_pred             CCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----------------------CCC
Q 013871           79 DFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----------------------QSQ  132 (434)
Q Consensus        79 ~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----------------------~~~  132 (434)
                      ..+..    ...+.|...|.+++..+++ ..++     ++..+..+.||+.+...                      .+.
T Consensus       178 ~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~-----SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  178 VGENKVKALKVCRGHKRSVDSVSVDSSG-TRFC-----SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             CchhhhhHHhHhcccccceeEEEecCCC-CeEE-----eecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            65432    1233666789999988874 3333     34566788888843210                      245


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE
Q 013871          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av  212 (434)
                      ++..+..|...+..+.|++.+.    +.+..-|.+.+.|       .+.+.+..   ..+.....+.++..+|..+.++ 
T Consensus       252 P~vtl~GHt~~Vs~V~w~d~~v----~yS~SwDHTIk~W-------Dletg~~~---~~~~~~ksl~~i~~~~~~~Ll~-  316 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSDATV----IYSVSWDHTIKVW-------DLETGGLK---STLTTNKSLNCISYSPLSKLLA-  316 (423)
T ss_pred             ceEEecccccceeeEEEcCCCc----eEeecccceEEEE-------Eeecccce---eeeecCcceeEeecccccceee-
Confidence            6677888999999999998332    2233467777744       44433332   2222367889999999888777 


Q ss_pred             EEccCCCeEEEEecccc----eeEEe--CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCE-EEEEeeCC--Cc
Q 013871          213 VYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CS  282 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~~~----~~~~~--~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~  282 (434)
                       +|+.+..+++||-+..    ..++|  |+.-|.++.|||...+ |++++   .|+++++||+++-+ .+..+.+|  .+
T Consensus       317 -~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k~plydI~~h~DKv  392 (423)
T KOG0313|consen  317 -SGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTKAPLYDIAGHNDKV  392 (423)
T ss_pred             -ecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCCCcceeeccCCceE
Confidence             7899999999998732    22334  7889999999998875 55556   45699999999776 78888777  45


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..+.|+ +|.+|++|+.      |++++|+..
T Consensus       393 l~vdW~-~~~~IvSGGa------D~~l~i~~~  417 (423)
T KOG0313|consen  393 LSVDWN-EGGLIVSGGA------DNKLRIFKG  417 (423)
T ss_pred             EEEecc-CCceEEeccC------cceEEEecc
Confidence            668998 5679999999      999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.82  E-value=4.3e-18  Score=150.07  Aligned_cols=227  Identities=14%  Similarity=0.207  Sum_probs=165.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE-ec-CCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR-MA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~-~~-~~~i~v~~~~~   79 (434)
                      |..+.|.+||+.|++++     .|++|+.||+++|++++.+..+.   .-+..+.=+.-|..++. +. |+++++||+..
T Consensus        93 VM~l~~~~d~s~i~S~g-----tDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   93 VMELHGMRDGSHILSCG-----TDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eEeeeeccCCCEEEEec-----CCceEEEEecccceeeehhcccc---ceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            67789999999999999     89999999999999999887653   55555564445555554 44 46999999976


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .+......-.. .+.++.|...++..+.      ++.++.|++|++...                       ++.     
T Consensus       165 k~~~~t~~~ky-qltAv~f~d~s~qv~s------ggIdn~ikvWd~r~~-----------------------d~~-----  209 (338)
T KOG0265|consen  165 KEAIKTFENKY-QLTAVGFKDTSDQVIS------GGIDNDIKVWDLRKN-----------------------DGL-----  209 (338)
T ss_pred             cchhhccccce-eEEEEEecccccceee------ccccCceeeeccccC-----------------------cce-----
Confidence            43211111111 3677788776555443      567778888887541                       111     


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-----ceeEEe
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-----RPILEL  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-----~~~~~~  234 (434)
                                        |.+   .++        ..+|..+..+|+|.++.  +.+||+++++||.+.     ..+..+
T Consensus       210 ------------------~~l---sGh--------~DtIt~lsls~~gs~ll--snsMd~tvrvwd~rp~~p~~R~v~if  258 (338)
T KOG0265|consen  210 ------------------YTL---SGH--------ADTITGLSLSRYGSFLL--SNSMDNTVRVWDVRPFAPSQRCVKIF  258 (338)
T ss_pred             ------------------EEe---ecc--------cCceeeEEeccCCCccc--cccccceEEEEEecccCCCCceEEEe
Confidence                              222   112        56888999999999888  789999999999861     223323


Q ss_pred             ----CCcC--eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeC
Q 013871          235 ----GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 ----~~~~--~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                          |...  ...++|||+++++..++   .+..+++||......+..+.+|  .+..++|+|...+|+++++      |
T Consensus       259 ~g~~hnfeknlL~cswsp~~~~i~ags---~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s------d  329 (338)
T KOG0265|consen  259 QGHIHNFEKNLLKCSWSPNGTKITAGS---ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS------D  329 (338)
T ss_pred             ecchhhhhhhcceeeccCCCCcccccc---ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc------C
Confidence                2222  33579999999998887   4459999999999999999998  4556999999999999999      8


Q ss_pred             CcEEE
Q 013871          307 NGIKI  311 (434)
Q Consensus       307 ~~i~i  311 (434)
                      .+|.+
T Consensus       330 k~i~l  334 (338)
T KOG0265|consen  330 KTIYL  334 (338)
T ss_pred             ceeEe
Confidence            88875

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=5.1e-19  Score=164.88  Aligned_cols=236  Identities=16%  Similarity=0.205  Sum_probs=164.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~   79 (434)
                      |+.++||.+|+.+++++     .|+.|++||++||+++.+|...    ....|+.|.||+ +.++.+ .++.|+-||+.+
T Consensus       261 Vrd~~~s~~g~~fLS~s-----fD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs  331 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSAS-----FDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS  331 (503)
T ss_pred             hhhhhccccCCeeeeee-----cceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEecCCCcEEEEeccc
Confidence            77899999999999999     8999999999999999998765    455589999998 555444 678999999998


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~  158 (434)
                      ........-++..|..+.|-+++...|..      ..+..++||+...   .-++........ ..-++.-+|.|.+++.
T Consensus       332 ~kvvqeYd~hLg~i~~i~F~~~g~rFiss------SDdks~riWe~~~---~v~ik~i~~~~~hsmP~~~~~P~~~~~~a  402 (503)
T KOG0282|consen  332 GKVVQEYDRHLGAILDITFVDEGRRFISS------SDDKSVRIWENRI---PVPIKNIADPEMHTMPCLTLHPNGKWFAA  402 (503)
T ss_pred             hHHHHHHHhhhhheeeeEEccCCceEeee------ccCccEEEEEcCC---CccchhhcchhhccCcceecCCCCCeehh
Confidence            76555566778889999999986555542      3445899999876   333333222211 2235667888887643


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--C
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~  235 (434)
                      -  + .|.....|. ....|.+.....++.   ..-.|.-..+.|||||+.++  +|+.+|++.+||.++-.+ ..+  |
T Consensus       403 Q--s-~dN~i~ifs-~~~~~r~nkkK~feG---h~vaGys~~v~fSpDG~~l~--SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  403 Q--S-MDNYIAIFS-TVPPFRLNKKKRFEG---HSVAGYSCQVDFSPDGRTLC--SGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             h--c-cCceEEEEe-cccccccCHhhhhcc---eeccCceeeEEEcCCCCeEE--eecCCccEEEeechhhhhhhccccC
Confidence            2  1 222221111 111111111111000   00146667899999999999  899999999999975443 333  7


Q ss_pred             CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEE
Q 013871          236 SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       236 ~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd  267 (434)
                      .+++..+.|+|... .+|+++   .+|.|++||
T Consensus       474 ~~~ci~v~wHP~e~Skvat~~---w~G~Ikiwd  503 (503)
T KOG0282|consen  474 DQPCIGVDWHPVEPSKVATCG---WDGLIKIWD  503 (503)
T ss_pred             CcceEEEEecCCCcceeEecc---cCceeEecC
Confidence            89999999999875 777777   678999996

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3e-18  Score=147.84  Aligned_cols=282  Identities=12%  Similarity=0.143  Sum_probs=194.5

Q ss_pred             ceEEecCC-CcEEEEE--ecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEEEeC
Q 013871            3 LLLTCLRV-GLIIQTF--QKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQFFDT   77 (434)
Q Consensus         3 ~~l~fSP~-g~~L~t~--~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v~~~   77 (434)
                      .++.|||- .++|+.+  +-+.-...+.|.|-++..+.-+..+..-. ..+..-.++||++  ...++..+||++++||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            47899994 3455433  33333456889999986554444433321 1144448899984  45666668999999997


Q ss_pred             CCCCC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           78 TDFPK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        78 ~~~~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ..... ....+-|...|.++.|.+-....+..     ..-+++|+||+...   ...+.+...+..-+.+..|+|.-..+
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lt-----sSWD~TiKLW~~~r---~~Sv~Tf~gh~~~Iy~a~~sp~~~nl  162 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLT-----SSWDGTIKLWDPNR---PNSVQTFNGHNSCIYQAAFSPHIPNL  162 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEe-----eccCCceEeecCCC---CcceEeecCCccEEEEEecCCCCCCe
Confidence            55433 22344556679999999875444432     36788999999876   77788888888888999999987777


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~  234 (434)
                      +..+++  |.+       -.||.++..|.. ..++. +...|.++.|+.-...+++ +|..|+.|+.||++.  .++.++
T Consensus       163 fas~Sg--d~~-------l~lwdvr~~gk~-~~i~a-h~~Eil~cdw~ky~~~vl~-Tg~vd~~vr~wDir~~r~pl~eL  230 (311)
T KOG0277|consen  163 FASASG--DGT-------LRLWDVRSPGKF-MSIEA-HNSEILCCDWSKYNHNVLA-TGGVDNLVRGWDIRNLRTPLFEL  230 (311)
T ss_pred             EEEccC--Cce-------EEEEEecCCCce-eEEEe-ccceeEeecccccCCcEEE-ecCCCceEEEEehhhccccceee
Confidence            555443  333       346666555542 22333 3578999999986555554 789999999999973  456665


Q ss_pred             --CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCC
Q 013871          235 --GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~prl~~D~  307 (434)
                        |.-.|..+.|||+.. .|+++++|-   +++|||.... ..+.+...|  -+..+.||+- +.++++.+-      |.
T Consensus       231 ~gh~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW------De  301 (311)
T KOG0277|consen  231 NGHGLAVRKVKFSPHHASLLASASYDM---TVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW------DE  301 (311)
T ss_pred             cCCceEEEEEecCcchhhHhhhccccc---eEEecccccchhhhhhhhccceEEeccccccccCceeeeccc------cc
Confidence              677899999999875 788888664   9999998855 345555555  3334899874 556676666      99


Q ss_pred             cEEEEee
Q 013871          308 GIKIFHH  314 (434)
Q Consensus       308 ~i~iw~~  314 (434)
                      .++||+-
T Consensus       302 ~l~Vw~p  308 (311)
T KOG0277|consen  302 LLYVWNP  308 (311)
T ss_pred             ceeeecc
Confidence            9999983

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=5.1e-18  Score=150.54  Aligned_cols=229  Identities=13%  Similarity=0.151  Sum_probs=167.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~   78 (434)
                      |++|+.  +|.|+|+.+     .|.+|+|||+.+...+..+..+.   ..++++.|.++-.  .|.++ .|+.|.+|+..
T Consensus        46 itavAV--s~~~~aSGs-----sDetI~IYDm~k~~qlg~ll~Ha---gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   46 ITALAV--SGPYVASGS-----SDETIHIYDMRKRKQLGILLSHA---GSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             eeEEEe--cceeEeccC-----CCCcEEEEeccchhhhcceeccc---cceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            456666  688999888     89999999999888888877653   7888999999874  55555 67899999999


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .+......+-|...|+.++++|.+...+++      +.+..+++|++-.+                         +.-.+
T Consensus       116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsV------g~D~~lr~WNLV~G-------------------------r~a~v  164 (362)
T KOG0294|consen  116 SWELLKSLKAHKGQVTDLSIHPSGKLALSV------GGDQVLRTWNLVRG-------------------------RVAFV  164 (362)
T ss_pred             CeEEeeeecccccccceeEecCCCceEEEE------cCCceeeeehhhcC-------------------------cccee
Confidence            987766777777789999999986544544      45668888988651                         11111


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCc-
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG-  237 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~-  237 (434)
                      +                               +|.  ..-+.+.|+|.|.+|+++.   ..+|-+|.+....++..-.. 
T Consensus       165 ~-------------------------------~L~--~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~A~v~~~i~~~  208 (362)
T KOG0294|consen  165 L-------------------------------NLK--NKATLVSWSPQGDHFVVSG---RNKIDIYQLDNASVFREIENP  208 (362)
T ss_pred             e-------------------------------ccC--CcceeeEEcCCCCEEEEEe---ccEEEEEecccHhHhhhhhcc
Confidence            0                               011  1123389999999999853   34889998865554433222 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEE--EECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS--EWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~--~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                       .+.++.|- ++..|++|+   .++.|.+||.++......+.+|  .+-.+  --.|++.+|+|+++      ||.|+||
T Consensus       209 ~r~l~~~~l-~~~~L~vG~---d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~I~vW  278 (362)
T KOG0294|consen  209 KRILCATFL-DGSELLVGG---DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGFIKVW  278 (362)
T ss_pred             ccceeeeec-CCceEEEec---CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------CceEEEE
Confidence             24455553 466777787   5579999999998888888888  33333  34789999999999      9999999


Q ss_pred             eecCc
Q 013871          313 HHNGS  317 (434)
Q Consensus       313 ~~~g~  317 (434)
                      |++-.
T Consensus       279 d~~~~  283 (362)
T KOG0294|consen  279 DIDME  283 (362)
T ss_pred             Ecccc
Confidence            99665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.81  E-value=7.3e-17  Score=159.86  Aligned_cols=240  Identities=13%  Similarity=0.131  Sum_probs=159.0

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .........+....|||+ +..+++...+.+  ...+.++++..   ++ ...+..+......+.|+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g--~~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~S  251 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFESG--RSALVIQTLAN---GA-VRQVASFPRHNGAPAFS  251 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCC-CCEEEEEEecCC--CcEEEEEECCC---CC-eEEccCCCCCcCCeEEC
Confidence            788888776443 222223345889999999 566665543322  35788888865   33 22233334445578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~  228 (434)
                      |||+.|++..+.+         |...||.+++.+.....+. .....+..+.|+|||+.+++.+.. .+  .+.++|+.+
T Consensus       252 PDG~~La~~~~~~---------g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~-~g~~~Iy~~d~~~  320 (429)
T PRK03629        252 PDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQ-AGRPQVYKVNING  320 (429)
T ss_pred             CCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCC-CCCceEEEEECCC
Confidence            9999988764321         3345888887765433332 224567889999999999876532 23  566667765


Q ss_pred             ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                      .....+  .........|||||++|+..+..+....|++||+.+++..............|||||++|+.++.      |
T Consensus       321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~------~  394 (429)
T PRK03629        321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS------Q  394 (429)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc------C
Confidence            544443  33445678999999999887755445679999998875443333223335899999999999998      5


Q ss_pred             Cc---EEEEeecCceeeee--ecccceeeEEEcC
Q 013871          307 NG---IKIFHHNGSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       307 ~~---i~iw~~~g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      +.   +.+++.+|......  +...+....|+|.
T Consensus       395 ~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        395 GMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  428 (429)
T ss_pred             CCceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence            53   77888889876554  3356888889874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.5e-16  Score=132.23  Aligned_cols=289  Identities=15%  Similarity=0.198  Sum_probs=187.9

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEE------cCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWK------TETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA   68 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd------~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~   68 (434)
                      .|++++|.|.|..-+..+     ..++++|--      +..+.      +.-.+.....|+..+-|.+|||+|.++|+++
T Consensus        34 airav~fhp~g~lyavgs-----nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGS-----NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             heeeEEecCCCceEEecc-----CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            378999999999999877     556666542      21111      1122333334567777999999999999997


Q ss_pred             C-CeEEEEeCCCCCC---c--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           69 T-NEIQFFDTTDFPK---G--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        69 ~-~~i~v~~~~~~~~---~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      + .+|++...+....   +  .....|...|++++|-.+...--++.... +..+..|.+-+...   ++.....+.|..
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~---g~~~~a~sghtg  184 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGR---GQGFHALSGHTG  184 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCC---CCcceeecCCcc
Confidence            5 4888766543211   1  12334455688888765532211222211 11223444445555   788888888888


Q ss_pred             ceeEE-EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          143 STVQL-NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       143 ~~~~~-~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .+..+ .||.   .+  +++...|++.+.|.-..+... .+.+..-..--++ ...|.+++..|.|+.++  +|..|...
T Consensus       185 hilalyswn~---~m--~~sgsqdktirfwdlrv~~~v-~~l~~~~~~~gle-ssavaav~vdpsgrll~--sg~~dssc  255 (350)
T KOG0641|consen  185 HILALYSWNG---AM--FASGSQDKTIRFWDLRVNSCV-NTLDNDFHDGGLE-SSAVAAVAVDPSGRLLA--SGHADSSC  255 (350)
T ss_pred             cEEEEEEecC---cE--EEccCCCceEEEEeeecccee-eeccCcccCCCcc-cceeEEEEECCCcceee--eccCCCce
Confidence            87765 5763   22  455557888876642221110 1101000000011 35688999999999998  79999999


Q ss_pred             EEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---E-EEEEeeCC--CceEEEECCCCC
Q 013871          222 TIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---K-QLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       222 ~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~-~i~~~~~~--~~~~~~wspdg~  292 (434)
                      .+||+++ ..+..|  |...+.++.|||...|++++++++   .|++-|+..-   + .+.....|  .++.|.|.|..-
T Consensus       256 ~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~  332 (350)
T KOG0641|consen  256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF  332 (350)
T ss_pred             EEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc---eEEEeecccchhhcCceEEEEeccCceEEEEecCccc
Confidence            9999985 456666  678899999999999999999776   9999998732   1 12222222  566799999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecC
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .|++.+.      |.++.+|.+.|
T Consensus       333 sfisssa------dkt~tlwa~~~  350 (350)
T KOG0641|consen  333 SFISSSA------DKTATLWALNG  350 (350)
T ss_pred             eeeeccC------cceEEEeccCC
Confidence            9999988      99999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.80  E-value=2.4e-18  Score=157.56  Aligned_cols=260  Identities=11%  Similarity=0.113  Sum_probs=193.3

Q ss_pred             CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ...+..+.|-++...|+++ .|..|++|++....  ..........+|.++.+.+++...||.      +.+..+++|++
T Consensus       175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa------s~d~~~r~Wnv  248 (459)
T KOG0288|consen  175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA------SNDKNLRLWNV  248 (459)
T ss_pred             ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee------cCCCceeeeec
Confidence            3566688999998888887 46699999986533  222233445679999999986555552      55678999999


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                      .+   .+...++++|...++.+.+......   +.+...|.+.+.|.       +.  .. .|.-++-....+.+|.-+ 
T Consensus       249 d~---~r~~~TLsGHtdkVt~ak~~~~~~~---vVsgs~DRtiK~WD-------l~--k~-~C~kt~l~~S~cnDI~~~-  311 (459)
T KOG0288|consen  249 DS---LRLRHTLSGHTDKVTAAKFKLSHSR---VVSGSADRTIKLWD-------LQ--KA-YCSKTVLPGSQCNDIVCS-  311 (459)
T ss_pred             cc---hhhhhhhcccccceeeehhhccccc---eeeccccchhhhhh-------hh--hh-heeccccccccccceEec-
Confidence            88   7889999999999999988876655   23344677777553       21  11 222222123456777766 


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---
Q 013871          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---  280 (434)
                         ...+++|.+|.+|++||.+. ..+.+. ..+.++++..+++|..|++.+.++   ++.+.|+.+.+....+.+.   
T Consensus       312 ---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k  385 (459)
T KOG0288|consen  312 ---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFK  385 (459)
T ss_pred             ---ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccc
Confidence               24455899999999999874 445555 356899999999999999998776   9999999999888887764   


Q ss_pred             ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee---ec-c-cceeeEEEcCCCCCCCCc
Q 013871          281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MF-D-KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~---~~-~-~~~~~~w~p~~~~~~~~~  343 (434)
                         +.+.+.|||||+|+++|+.      |+.|+||++.+..+...   .. . .+..+.|.|-+.+++...
T Consensus       386 ~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  386 CASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             cccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence               5555999999999999999      99999999966544332   11 2 599999999999988874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=3.4e-16  Score=147.56  Aligned_cols=255  Identities=10%  Similarity=0.069  Sum_probs=161.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      +.+++|+|+|++|+...    ..++.|++||+.+++.+..+....   . ...+.|+||+++++..  .++.|.+||+..
T Consensus        33 ~~~l~~~~dg~~l~~~~----~~~~~v~~~d~~~~~~~~~~~~~~---~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~  104 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCA----SDSDTIQVIDLATGEVIGTLPSGP---D-PELFALHPNGKILYIANEDDNLVTVIDIET  104 (300)
T ss_pred             CCceEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEeccCCC---C-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            45789999999875433    157889999999998877665432   2 3378999999977554  357999999976


Q ss_pred             CCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           80 FPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  ...+. ...+..+.|+|++ ..+++...    ....+.+|+..+   ...+... ........+.|+++|+.+++
T Consensus       105 ~~~--~~~~~~~~~~~~~~~~~dg-~~l~~~~~----~~~~~~~~d~~~---~~~~~~~-~~~~~~~~~~~s~dg~~l~~  173 (300)
T TIGR03866       105 RKV--LAEIPVGVEPEGMAVSPDG-KIVVNTSE----TTNMAHFIDTKT---YEIVDNV-LVDQRPRFAEFTADGKELWV  173 (300)
T ss_pred             CeE--EeEeeCCCCcceEEECCCC-CEEEEEec----CCCeEEEEeCCC---CeEEEEE-EcCCCccEEEECCCCCEEEE
Confidence            432  22222 1236789999984 44443221    123466677755   3333222 22234457899999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcce-eeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~------~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~  231 (434)
                      ...  .+.         .++.++...... ..+....      ......++|+|+|+.+++..+ .+..+.+||++...+
T Consensus       174 ~~~--~~~---------~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       174 SSE--IGG---------TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-PANRVAVVDAKTYEV  241 (300)
T ss_pred             EcC--CCC---------EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC-CCCeEEEEECCCCcE
Confidence            321  121         133344333211 1111110      112346899999998765433 356899999975443


Q ss_pred             E-Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013871          232 L-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP  289 (434)
Q Consensus       232 ~-~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp  289 (434)
                      . .+ +...+.++.|+|+|++|++++.  .+|+|.+||+++++.+..+... .+..++++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~  300 (300)
T TIGR03866       242 LDYLLVGQRVWQLAFTPDEKYLLTTNG--VSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP  300 (300)
T ss_pred             EEEEEeCCCcceEEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence            3 22 4567889999999999987642  3579999999999988777654 455566654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.79  E-value=2.3e-17  Score=160.95  Aligned_cols=276  Identities=14%  Similarity=0.063  Sum_probs=202.5

Q ss_pred             cceEEe-cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871            2 LLLLTC-LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~f-SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      |..|.| -|+.++|+.++     +.+.++++++.+-.+- -+.+   |.+.+.++.-..+|-+|++++ |+++++|.+++
T Consensus       326 I~Dm~~lG~e~~~laVAT-----Ns~~lr~y~~~~~~c~-ii~G---H~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  326 ILDMKFLGPEESHLAVAT-----NSPELRLYTLPTSYCQ-IIPG---HTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             heeeeecCCccceEEEEe-----CCCceEEEecCCCceE-EEeC---chhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            344554 57889999988     6789999998877763 3333   447777888556778999885 67999998844


Q ss_pred             CCC----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc--ee----eeeecccceeEEEE
Q 013871           80 FPK----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP--LA----RRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~~~----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~--i~----~~~~~~~~~~~~~w  149 (434)
                      ...    ......|...|..++++-.+...++     +.+.+.++++|+++...+...  +.    ....|..++.++..
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffv-----svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai  471 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFV-----SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI  471 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEE-----EecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence            221    1223445566778888766544444     246778999999987221111  11    12246778899999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~  228 (434)
                      +|+.+.+   +....|++-+.|.-+ ++-++.+..+        |...|.++.|+|....++  +++.|.+|+||.+. .
T Consensus       472 a~ndkLi---AT~SqDktaKiW~le-~~~l~~vLsG--------H~RGvw~V~Fs~~dq~la--T~SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  472 APNDKLI---ATGSQDKTAKIWDLE-QLRLLGVLSG--------HTRGVWCVSFSKNDQLLA--TCSGDKTVKIWSISTF  537 (775)
T ss_pred             cCCCceE---Eecccccceeeeccc-CceEEEEeeC--------CccceEEEEeccccceeE--eccCCceEEEEEeccc
Confidence            9988754   334467888755443 2223333333        477999999999998888  45667899999885 3


Q ss_pred             ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      ..+.+|  |...|..+.|-.+|+.|++++   .+|-|++|++++.+++.++.+|  .++.++-+|.+.+|+||+.     
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~-----  609 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG-----  609 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCC-----
Confidence            444444  788999999999999999999   6789999999999999999998  5677999999999999999     


Q ss_pred             eCCcEEEEee
Q 013871          305 IDNGIKIFHH  314 (434)
Q Consensus       305 ~D~~i~iw~~  314 (434)
                       |+.|.+|+=
T Consensus       610 -Dg~i~~wkD  618 (775)
T KOG0319|consen  610 -DGRIIFWKD  618 (775)
T ss_pred             -CeEEEEeec
Confidence             999999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=3.4e-17  Score=145.32  Aligned_cols=272  Identities=14%  Similarity=0.145  Sum_probs=180.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .|+.||+.|.|||.+.     .|+.|.|||+.|...-+.+..+   ...+.+++||+||+.|++++ |+.|.+||+..+.
T Consensus        27 ~~~~Fs~~G~~lAvGc-----~nG~vvI~D~~T~~iar~lsaH---~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   27 ECCQFSRWGDYLAVGC-----ANGRVVIYDFDTFRIARMLSAH---VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             ceEEeccCcceeeeec-----cCCcEEEEEccccchhhhhhcc---ccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence            5899999999999998     8999999999988765555553   36788999999999999885 6899999998876


Q ss_pred             CceeeeeecC-CeeEEEEeCCCCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEE
Q 013871           82 KGILYRLRVP-GVAAFEVSKAPGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        82 ~~~~~~~~~~-~v~~~~~sp~~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~  157 (434)
                      .  ..++.+. .|....|+|-..+.+ ++-+.++   | .+..++-+.   ...+..-.-.  ........+.+.|++|+
T Consensus        99 ~--l~rirf~spv~~~q~hp~k~n~~va~~~~~s---p-~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIi  169 (405)
T KOG1273|consen   99 P--LKRIRFDSPVWGAQWHPRKRNKCVATIMEES---P-VVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDRRGKYII  169 (405)
T ss_pred             c--eeEEEccCccceeeeccccCCeEEEEEecCC---c-EEEEecCCc---eeeccCCCccccccccccccccCCCCEEE
Confidence            4  3444443 488899999754433 3322221   2 222222111   0000000000  00001124678888876


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------  228 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-------  228 (434)
                      ..++     .|       .|..++.... ++...+.  ....|.++.++-.|+.|++  ...|..|+.|+++.       
T Consensus       170 tGts-----KG-------kllv~~a~t~-e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  170 TGTS-----KG-------KLLVYDAETL-ECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRD  234 (405)
T ss_pred             EecC-----cc-------eEEEEecchh-eeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCcc
Confidence            6431     11       1333333222 2222211  1357889999999999986  56688999998751       


Q ss_pred             ---ceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEE
Q 013871          229 ---RPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       229 ---~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas  298 (434)
                         ++.+.+    .+.+-++++||-+|.|++.++.  ....++||....|.++..+.+.   ....+.|.|-...|++- 
T Consensus       235 ~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-  311 (405)
T KOG1273|consen  235 GEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-  311 (405)
T ss_pred             CCcChhHHHHHHHhhhhhhheeecCCccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-
Confidence               111222    3456688999999999998762  4579999999999888888765   45568999998777776 


Q ss_pred             cCCceeeCCcEEEEeec
Q 013871          299 TAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~  315 (434)
                      .      .+.++||...
T Consensus       312 ~------sg~v~iw~~~  322 (405)
T KOG1273|consen  312 A------SGVVYIWAVV  322 (405)
T ss_pred             c------CCceEEEEee
Confidence            3      7999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.3e-17  Score=151.30  Aligned_cols=274  Identities=12%  Similarity=0.204  Sum_probs=195.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~~   77 (434)
                      |++|+|+|.-..|+|++     .|++++||.+..  ...++++....   ..+.+..|.|+|. .+++++ ..-++.||+
T Consensus       216 I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~---fPi~~a~f~p~G~~~i~~s~rrky~ysyDl  287 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEK---FPIQKAEFAPNGHSVIFTSGRRKYLYSYDL  287 (514)
T ss_pred             ceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeecc---CccceeeecCCCceEEEecccceEEEEeec
Confidence            78999999999999999     899999998742  23456655544   5666889999998 555554 358999999


Q ss_pred             CCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           78 TDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        78 ~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .........   ......+..|++||+ +++|++     .|..+.|.|....+   +.-+.... ..+.+..+.|+.+|+
T Consensus       288 e~ak~~k~~~~~g~e~~~~e~FeVShd-~~fia~-----~G~~G~I~lLhakT---~eli~s~K-ieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  288 ETAKVTKLKPPYGVEEKSMERFEVSHD-SNFIAI-----AGNNGHIHLLHAKT---KELITSFK-IEGVVSDFTFSSDSK  357 (514)
T ss_pred             cccccccccCCCCcccchhheeEecCC-CCeEEE-----cccCceEEeehhhh---hhhhheee-eccEEeeEEEecCCc
Confidence            763321111   112336788999999 566665     35667777776655   44444333 234567889999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE--EEEECcCCCEEEEEEccCCCeEEEEecc-----
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFMPASATIFNKK-----  227 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~--~v~wspdg~~~av~~g~~~~~v~l~d~~-----  227 (434)
                      .|+++..+          |  .+|.+++... .+.-....+|.|+  +++.|++|.+||  +|+..|.|.|||.+     
T Consensus       358 ~l~~~~~~----------G--eV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA--~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  358 ELLASGGT----------G--EVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLA--TGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             EEEEEcCC----------c--eEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEE--eccCcceEEEeccchhhcc
Confidence            88765311          3  3566655444 3333333356665  678889999999  69999999999964     


Q ss_pred             --cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEE
Q 013871          228 --CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       228 --~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas  298 (434)
                        -.++..+  -...|+++.|+||+++||+++.. ....+++..+-+......+...     .+++++|||.|-||+.|.
T Consensus       423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~-~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV-KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence              2345444  36778999999999999999865 3457888888777666655442     567899999999999999


Q ss_pred             cCCceeeCCcEEEEeec
Q 013871          299 TAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~  315 (434)
                      .      ++.+.+|.+.
T Consensus       502 e------~grv~l~kL~  512 (514)
T KOG2055|consen  502 E------AGRVHLFKLH  512 (514)
T ss_pred             C------CCceeeEeec
Confidence            9      9999999863

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1.2e-18  Score=155.38  Aligned_cols=294  Identities=12%  Similarity=0.125  Sum_probs=189.7

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      ...|||+|+|+++.++      -.+.|-|..+-+.++-|..-    +.+..+.|+.|.-++.++  .++.|++|++...+
T Consensus        13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE   82 (447)
T ss_pred             ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecce
Confidence            3679999999999883      37888898887765554443    233378999999888776  45799999998755


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      -.....-...++.++.|||++ ..|..+    .....+|.+|++.+    +...-....+...-.+.+++||++.+++..
T Consensus        83 w~ckIdeg~agls~~~WSPdg-rhiL~t----seF~lriTVWSL~t----~~~~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   83 WYCKIDEGQAGLSSISWSPDG-RHILLT----SEFDLRITVWSLNT----QKGYLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             eEEEeccCCCcceeeeECCCc-ceEeee----ecceeEEEEEEecc----ceeEEecccccCceeEEECCCCceeeeeec
Confidence            333333345689999999994 444433    34556899999976    333344455666678899999999877654


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcCeeE
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT  241 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~  241 (434)
                      .|-    +-|+.-.......+.+.  ..  ++ .-...++.|||||..++|.-..-+.+|..|.-         .-.+..
T Consensus       154 rDC----kdyv~i~~c~~W~ll~~--f~--~d-T~DltgieWsPdg~~laVwd~~Leykv~aYe~---------~lG~k~  215 (447)
T KOG4497|consen  154 RDC----KDYVQISSCKAWILLKE--FK--LD-TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------GLGLKF  215 (447)
T ss_pred             ccH----HHHHHHHhhHHHHHHHh--cC--CC-cccccCceECCCCcEEEEecchhhheeeeeee---------ccceeE
Confidence            322    11110000000000111  11  11 23456789999999999865544455555432         123567


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCCE-------------------------------------------------
Q 013871          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-------------------------------------------------  272 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~-------------------------------------------------  272 (434)
                      +.|||.+++|++|++|   +.++|.+--+.+                                                 
T Consensus       216 v~wsP~~qflavGsyD---~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~s  292 (447)
T KOG4497|consen  216 VEWSPCNQFLAVGSYD---QMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEES  292 (447)
T ss_pred             EEeccccceEEeeccc---hhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccc
Confidence            8899999999988854   455554322111                                                 


Q ss_pred             -----------EEEEee------CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ecccceeeE
Q 013871          273 -----------QLGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAE  331 (434)
Q Consensus       273 -----------~i~~~~------~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~~~~~~~~  331 (434)
                                 .+...+      .+  ++.-++||+|..|++|-.+    .+-|.+.|||++...++..  ..+.+..+.
T Consensus       293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd----~~PnalW~Wdlq~l~l~avLiQk~piraf~  368 (447)
T KOG4497|consen  293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND----KYPNALWLWDLQNLKLHAVLIQKHPIRAFE  368 (447)
T ss_pred             hhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC----CCCceEEEEechhhhhhhhhhhccceeEEE
Confidence                       001111      11  2334899999999999876    3478999999988776654  446788999


Q ss_pred             EEcCCCCCCC
Q 013871          332 WKPVSPDKFG  341 (434)
Q Consensus       332 w~p~~~~~~~  341 (434)
                      |.|..+.|.-
T Consensus       369 WdP~~prL~v  378 (447)
T KOG4497|consen  369 WDPGRPRLVV  378 (447)
T ss_pred             eCCCCceEEE
Confidence            9999887653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=9.7e-17  Score=142.20  Aligned_cols=262  Identities=10%  Similarity=0.102  Sum_probs=182.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+.|.|||.+.+|+..+     +|+.|++||+...+....|.+.    ..+.+++|.++...+..+.+++|+.+|++...
T Consensus        16 IS~v~f~~~~~~LLvss-----WDgslrlYdv~~~~l~~~~~~~----~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSS-----WDGSLRLYDVPANSLKLKFKHG----APLLDCAFADESTIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             eeeEEEcCcCCcEEEEe-----ccCcEEEEeccchhhhhheecC----CceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence            78999999999999988     9999999999877665555544    66778899987777777789999999998754


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      . ....-|.++|.++..++..+..|+      ++.+.+|++|+..+   ...+......+ .+.++  +-.|+.|++.+ 
T Consensus        87 ~-~~igth~~~i~ci~~~~~~~~vIs------gsWD~~ik~wD~R~---~~~~~~~d~~k-kVy~~--~v~g~~LvVg~-  152 (323)
T KOG1036|consen   87 E-DQIGTHDEGIRCIEYSYEVGCVIS------GSWDKTIKFWDPRN---KVVVGTFDQGK-KVYCM--DVSGNRLVVGT-  152 (323)
T ss_pred             c-eeeccCCCceEEEEeeccCCeEEE------cccCccEEEEeccc---cccccccccCc-eEEEE--eccCCEEEEee-
Confidence            3 445567788999999987555554      57889999999864   22222211111 22233  34566776643 


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE--Eecc-cc--e--eEEe
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI--FNKK-CR--P--ILEL  234 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l--~d~~-~~--~--~~~~  234 (434)
                        .+...       .+|.+........+-.-.-+..+.+++.-|++.-|++  ++.+|.|.+  +|.. ..  .  .+..
T Consensus       153 --~~r~v-------~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkC  221 (323)
T KOG1036|consen  153 --SDRKV-------LIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKC  221 (323)
T ss_pred             --cCceE-------EEEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEe
Confidence              22222       2344432222111111112568899999997777774  777887766  4433 11  1  1111


Q ss_pred             C---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013871          235 G---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       235 ~---------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~  300 (434)
                      |         --|||+|+|+|--..|++||   .||.|.+||..+.+.+..+...  .+..++|+-||..||+|+++
T Consensus       222 Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgG---sDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy  295 (323)
T KOG1036|consen  222 HRLSEKDTEIIYPVNAIAFHPIHGTFATGG---SDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY  295 (323)
T ss_pred             eecccCCceEEEEeceeEeccccceEEecC---CCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence            2         24789999999999999999   6789999999999888777654  45669999999999999983

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.78  E-value=2.4e-17  Score=154.77  Aligned_cols=239  Identities=13%  Similarity=0.185  Sum_probs=160.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEee----------cCcCCCCCCeeeecCCCc--EEEEecC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQ----------KNMTKTTWPSIRFSSDEA--VACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~----------~~~~~~~~~~~~~S~d~~--~la~~~~   69 (434)
                      |.+++|||.|..|+..+     .....+|+| ..|..+..|.-          ...|...++|..|.|+.+  +|.++.|
T Consensus       217 i~sl~ys~Tg~~iLvvs-----g~aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D  290 (641)
T KOG0772|consen  217 INSLQYSVTGDQILVVS-----GSAQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD  290 (641)
T ss_pred             cceeeecCCCCeEEEEe-----cCcceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence            78999999999888887     556788888 44544433321          122556778899999764  6666678


Q ss_pred             CeEEEEeCCCCCC-ceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           70 NEIQFFDTTDFPK-GILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        70 ~~i~v~~~~~~~~-~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      ++++||++++... ..+.+-...     .++.++|+|+ +..||.     +..+|.|++|++.+..    +         
T Consensus       291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrd-g~~iAa-----gc~DGSIQ~W~~~~~~----v---------  351 (641)
T KOG0772|consen  291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRD-GKLIAA-----GCLDGSIQIWDKGSRT----V---------  351 (641)
T ss_pred             CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCC-cchhhh-----cccCCceeeeecCCcc----c---------
Confidence            9999999987532 111111111     2455566665 333432     2334556666653310    0         


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                            +|                         .+.+.  ..+      .....|.++.||+||++|+  +.+.|..+++
T Consensus       352 ------~p-------------------------~~~vk--~AH------~~g~~Itsi~FS~dg~~Ll--SRg~D~tLKv  390 (641)
T KOG0772|consen  352 ------RP-------------------------VMKVK--DAH------LPGQDITSISFSYDGNYLL--SRGFDDTLKV  390 (641)
T ss_pred             ------cc-------------------------ceEee--ecc------CCCCceeEEEeccccchhh--hccCCCceee
Confidence                  00                         01110  111      0134799999999999999  5677889999


Q ss_pred             Eecc--cceeEEe----CCcCeeEEEECCCCCeEEEEec---CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871          224 FNKK--CRPILEL----GSGPYNTVRWNPKGKFLCLAGF---GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       224 ~d~~--~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~---~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~  292 (434)
                      ||++  .++++..    ...+-+.++|||+.++|++|..   +...|+++|||..+.+.+..+.-.  .++.|.|+|-=+
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLN  470 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLN  470 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhh
Confidence            9997  3444443    3455678999999999999853   224689999999999888877654  455599999999


Q ss_pred             EEEEEEcCCceeeCCcEEEE
Q 013871          293 YFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw  312 (434)
                      .|..++.      ||+++|+
T Consensus       471 Qi~~gsg------dG~~~vy  484 (641)
T KOG0772|consen  471 QIFAGSG------DGTAHVY  484 (641)
T ss_pred             heeeecC------CCceEEE
Confidence            9999888      9999985

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.78  E-value=1.4e-17  Score=147.39  Aligned_cols=272  Identities=11%  Similarity=0.157  Sum_probs=193.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC------------C------cEEEEEeecCcCCCCCCeeeecCCCcE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET------------G------EAVYQLFQKNMTKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~------------g------~~~~~~~~~~~~~~~~~~~~~S~d~~~   63 (434)
                      +++.+|||||.+++|++     .|..|+|.|++.            |      -.++++..   |.+.+.++.|.|-+..
T Consensus       115 cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD---H~devn~l~FHPre~I  186 (430)
T KOG0640|consen  115 CRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD---HVDEVNDLDFHPRETI  186 (430)
T ss_pred             eeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh---ccCcccceeecchhhe
Confidence            46889999999999998     899999999851            1      12445544   3478889999999999


Q ss_pred             EEEec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---e
Q 013871           64 ACRMA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---R  137 (434)
Q Consensus        64 la~~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~  137 (434)
                      |++++ |++|++||..........+  ...+.|.+++|+|.+ .++++     +..-..+++|++.+   -+....   -
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllv-----gTdHp~~rlYdv~T---~QcfvsanPd  257 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLV-----GTDHPTLRLYDVNT---YQCFVSANPD  257 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEE-----ecCCCceeEEeccc---eeEeeecCcc
Confidence            99995 6799999987644322222  224579999999995 44443     22334789999977   333322   2


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEE
Q 013871          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~  214 (434)
                      ..|...++++.+|+.|+. .+.  ...|..++.|.|-.+          .|.-++.   ....|.+..|..+|+++.  +
T Consensus       258 ~qht~ai~~V~Ys~t~~l-YvT--aSkDG~IklwDGVS~----------rCv~t~~~AH~gsevcSa~Ftkn~kyiL--s  322 (430)
T KOG0640|consen  258 DQHTGAITQVRYSSTGSL-YVT--ASKDGAIKLWDGVSN----------RCVRTIGNAHGGSEVCSAVFTKNGKYIL--S  322 (430)
T ss_pred             cccccceeEEEecCCccE-EEE--eccCCcEEeeccccH----------HHHHHHHhhcCCceeeeEEEccCCeEEe--e
Confidence            346778899999999984 222  335667777766433          1222222   146889999999999888  6


Q ss_pred             ccCCCeEEEEecc-cceeEEeC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--Cce
Q 013871          215 GFMPASATIFNKK-CRPILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSV  283 (434)
Q Consensus       215 g~~~~~v~l~d~~-~~~~~~~~-------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~  283 (434)
                      ..||..+++|.+. +..+..+.       ....+...|+....|+++-.-  ..+.+.-||.++...+.... +|  .+.
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R  400 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVR  400 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCce
Confidence            8899999999995 45555551       123456788888888887542  34789999998875444332 23  344


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+.-||.+.-|+|++.      |..+|.|-
T Consensus       401 ~i~HSP~~p~FmTcsd------D~raRFWy  424 (430)
T KOG0640|consen  401 WIVHSPVEPAFMTCSD------DFRARFWY  424 (430)
T ss_pred             EEEeCCCCCceeeecc------cceeeeee
Confidence            4888999999999999      99999995

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=2.4e-17  Score=157.95  Aligned_cols=259  Identities=11%  Similarity=0.119  Sum_probs=190.3

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..|.++++.|-+-++..+ .+|.|+||+.++........+....|+...|-+-. .-+.+     +..+..|++|++.+ 
T Consensus        14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~-----GsDD~~IrVfnynt-   86 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVT-----GSDDMQIRVFNYNT-   86 (794)
T ss_pred             CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEE-----ecCCceEEEEeccc-
Confidence            677799999998866655 78999999988754433333333345555554432 22221     35667999999988 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECc-C
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSY-S  206 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wsp-d  206 (434)
                        ...+.+...|...+.++.-+|.--+++.  ++ .|-+.+.|.-+.         .-.+...++ |+--|.+++|.| |
T Consensus        87 --~ekV~~FeAH~DyIR~iavHPt~P~vLt--sS-DDm~iKlW~we~---------~wa~~qtfeGH~HyVMqv~fnPkD  152 (794)
T KOG0276|consen   87 --GEKVKTFEAHSDYIRSIAVHPTLPYVLT--SS-DDMTIKLWDWEN---------EWACEQTFEGHEHYVMQVAFNPKD  152 (794)
T ss_pred             --ceeeEEeeccccceeeeeecCCCCeEEe--cC-CccEEEEeeccC---------ceeeeeEEcCcceEEEEEEecCCC
Confidence              7888888899999999999998877543  22 456666543332         223333332 366788999999 5


Q ss_pred             CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-
Q 013871          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-  280 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-  280 (434)
                      .+.||  +++-|++|++|.+. ..+.+++  |...+|++.|=|-|.  +|++|+.|   -.|+|||.++..++.++++| 
T Consensus       153 ~ntFa--S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD---~tiKvWDyQtk~CV~TLeGHt  227 (794)
T KOG0276|consen  153 PNTFA--SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD---LTIKVWDYQTKSCVQTLEGHT  227 (794)
T ss_pred             cccee--eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC---ceEEEeecchHHHHHHhhccc
Confidence            56788  68889999999984 3444444  899999999988774  99999855   49999999999999999987 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCC
Q 013871          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~  340 (434)
                       +++.+.|+|.=..|++|+.      |+++||||-..-.+   .....+++|+++-.+....+.
T Consensus       228 ~Nvs~v~fhp~lpiiisgsE------DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~  285 (794)
T KOG0276|consen  228 NNVSFVFFHPELPIIISGSE------DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIA  285 (794)
T ss_pred             ccceEEEecCCCcEEEEecC------CccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence             7777999999999999999      99999999754322   223457888888877766543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.78  E-value=4.9e-17  Score=141.32  Aligned_cols=234  Identities=17%  Similarity=0.150  Sum_probs=166.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------NEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------~~i~v~   75 (434)
                      |||++.+-+.++|+|.+     .|.+++|||+++|+++.++...    ..+..+.|+.+|.+++...+      ..|.+|
T Consensus        55 vW~~Did~~s~~liTGS-----AD~t~kLWDv~tGk~la~~k~~----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f  125 (327)
T KOG0643|consen   55 VWCCDIDWDSKHLITGS-----ADQTAKLWDVETGKQLATWKTN----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVF  125 (327)
T ss_pred             EEEEEecCCcceeeecc-----ccceeEEEEcCCCcEEEEeecC----CeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence            78888888999999988     8999999999999999998765    55668999999999988754      489999


Q ss_pred             eCCCCC-----Cceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871           76 DTTDFP-----KGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        76 ~~~~~~-----~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      ++....     .....++  +...+...-|+|.+..+++      +..++.|.+|++.+.  .+.+.....|...+..|.
T Consensus       126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~------Ghe~G~is~~da~~g--~~~v~s~~~h~~~Ind~q  197 (327)
T KOG0643|consen  126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA------GHEDGSISIYDARTG--KELVDSDEEHSSKINDLQ  197 (327)
T ss_pred             EccCChhhhcccCceEEecCCccceeeeeecccCCEEEE------ecCCCcEEEEEcccC--ceeeechhhhcccccccc
Confidence            987432     1112222  2346888889998555554      467789999999873  244555677888899999


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEE-----
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SAT-----  222 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~-----  222 (434)
                      +++|.++.+..   ..|.+-+.+.       +.  . .+...+...+.||++.+++|.-..+++ .|..++ .|+     
T Consensus       198 ~s~d~T~FiT~---s~Dttakl~D-------~~--t-l~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVTTT~~r  263 (327)
T KOG0643|consen  198 FSRDRTYFITG---SKDTTAKLVD-------VR--T-LEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVTTTSTR  263 (327)
T ss_pred             ccCCcceEEec---ccCccceeee-------cc--c-eeeEEEeeecccccceecccccceEEe-cCCceeeeeeeeccc
Confidence            99999986432   2555555332       21  1 122333334789999999997766665 455443 222     


Q ss_pred             -------EEecc-cceeE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          223 -------IFNKK-CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       223 -------l~d~~-~~~~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                             +|++- .+.+-  .-|=+++|+++|+|+|+..++||   .+|.|++.-.+
T Consensus       264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG---EDG~VR~h~Fd  317 (327)
T KOG0643|consen  264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG---EDGYVRLHHFD  317 (327)
T ss_pred             ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC---CCceEEEEEec
Confidence                   23321 22222  22679999999999999999988   78899987544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=3.3e-17  Score=141.45  Aligned_cols=260  Identities=13%  Similarity=0.177  Sum_probs=180.2

Q ss_pred             eeeecC--CCcEEEEe-------cCCeEEEEeCCCCC-Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871           54 SIRFSS--DEAVACRM-------ATNEIQFFDTTDFP-KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        54 ~~~~S~--d~~~la~~-------~~~~i~v~~~~~~~-~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      +++|||  ++++++..       ++|.|.|.++.... ...... ...+++.+++||+.....+...     ..+|.++|
T Consensus        13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a-----~GDGSLrl   87 (311)
T KOG0277|consen   13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAA-----SGDGSLRL   87 (311)
T ss_pred             eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEE-----ecCceEEE
Confidence            789999  44444322       34799999986432 222222 2346899999999866555432     34579999


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE
Q 013871          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~  202 (434)
                      |+++..  ..||....-|+.++.++.|++......+..  .-|.+.|.|.+.         .......-..++..|+..+
T Consensus        88 ~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~---------r~~Sv~Tf~gh~~~Iy~a~  154 (311)
T KOG0277|consen   88 FDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS--SWDGTIKLWDPN---------RPNSVQTFNGHNSCIYQAA  154 (311)
T ss_pred             eccCCC--CcchhHHHhhhhheEEeccccccceeEEee--ccCCceEeecCC---------CCcceEeecCCccEEEEEe
Confidence            997654  678888889999999999999877765542  345555544321         1111111123578999999


Q ss_pred             ECcC-CCEEEEEEccCCCeEEEEecc--cc-eeEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEE
Q 013871          203 WSYS-GSEFAVVYGFMPASATIFNKK--CR-PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGT  276 (434)
Q Consensus       203 wspd-g~~~av~~g~~~~~v~l~d~~--~~-~~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~  276 (434)
                      |||- .+.|+  +.+.|+.++|||++  ++ .+...|...+.++.||...+ .|++|+   .|+.|+.||+++.+ .+..
T Consensus       155 ~sp~~~nlfa--s~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~r~pl~e  229 (311)
T KOG0277|consen  155 FSPHIPNLFA--SASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNLRTPLFE  229 (311)
T ss_pred             cCCCCCCeEE--EccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhcccccee
Confidence            9994 56677  56668899999997  22 23445788999999999765 666677   45699999999874 5666


Q ss_pred             eeCC--CceEEEECCCCCE-EEEEEcCCceeeCCcEEEEeecCc--e--eeeeecccceeeEEEcCCCCCCCC
Q 013871          277 TRAE--CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHHNGS--L--FFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg~~-l~tas~~prl~~D~~i~iw~~~g~--~--~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+|  .+..+.|||...- |++|+.      |-++|||++.-.  +  .+..+.+-+..+.|++..+..+.+
T Consensus       230 L~gh~~AVRkvk~Sph~~~lLaSasY------DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs  296 (311)
T KOG0277|consen  230 LNGHGLAVRKVKFSPHHASLLASASY------DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS  296 (311)
T ss_pred             ecCCceEEEEEecCcchhhHhhhccc------cceEEecccccchhhhhhhhccceEEeccccccccCceeee
Confidence            6777  4455999998665 556666      999999999632  2  233455668899999987766554

>PTZ00421 coronin; Provisional

Probab=99.77  E-value=1.5e-16  Score=158.51  Aligned_cols=220  Identities=9%  Similarity=0.059  Sum_probs=147.4

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~   71 (434)
                      |++++||| ++++|+|++     .|++|+|||+.++.       .+..+..+   ...+.+++|+|++ .+|+++ .|++
T Consensus        78 V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH---~~~V~~l~f~P~~~~iLaSgs~Dgt  149 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGH---TKKVGIVSFHPSAMNVLASAGADMV  149 (493)
T ss_pred             EEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCC---CCcEEEEEeCcCCCCEEEEEeCCCE
Confidence            78999999 899999999     89999999997653       34455443   3667799999985 678776 5789


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-eeEEEEC
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-TVQLNWN  150 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~~~~~ws  150 (434)
                      |+|||+...........+...|.+++|+|+ +..++.     .+.++.|+||++.+   ++.+.....+... ...+.|.
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spd-G~lLat-----gs~Dg~IrIwD~rs---g~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCT-----TSKDKKLNIIDPRD---GTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECC-CCEEEE-----ecCCCEEEEEECCC---CcEEEEEecCCCCcceEEEEc
Confidence            999999875433334445667999999998 455543     35678999999987   6677666666543 3467899


Q ss_pred             CCCCeEEEEEEe-cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871          151 RGSTGLLAVAQS-DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~-~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~  229 (434)
                      +++..++..... ..|...       .||.+...........+.....+....|+++++.+++ .|..|+.|++||+...
T Consensus       221 ~~~~~ivt~G~s~s~Dr~V-------klWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l-ggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQI-------MLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI-GSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCCCeEEEEecCCCCCCeE-------EEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE-EEeCCCeEEEEEeeCC
Confidence            988876543211 112222       2333321111111222333455667789999998876 3545889999999754


Q ss_pred             ee-EEe---CCcCeeEEEECC
Q 013871          230 PI-LEL---GSGPYNTVRWNP  246 (434)
Q Consensus       230 ~~-~~~---~~~~~~~i~~SP  246 (434)
                      .. ...   ...+...++|.|
T Consensus       293 ~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        293 RLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceEEEeeccCCCCCcceEecc
Confidence            33 222   234566677776

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=2.5e-16  Score=157.27  Aligned_cols=256  Identities=16%  Similarity=0.236  Sum_probs=175.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +.|+|.|+|.+|+|++     .|+.|++|+..+- +...++...   +..+  .....++.+|+++ .+++|++|..+++
T Consensus        17 t~i~~d~~gefi~tcg-----sdg~ir~~~~~sd~e~P~ti~~~---g~~v--~~ia~~s~~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   17 TLICYDPDGEFICTCG-----SDGDIRKWKTNSDEEEPETIDIS---GELV--SSIACYSNHFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             EEEEEcCCCCEEEEec-----CCCceEEeecCCcccCCchhhcc---Ccee--EEEeecccceEEeeccceEEEeeCCCC
Confidence            5789999999999999     8999999987655 333332211   1222  3445566677766 5689999999887


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ... ...++.. .++.++++-+ +..++.     ++.+-.|++.++..   .........+++.+.++.++|.|+.|++.
T Consensus        87 ~~~~iL~Rftl-p~r~~~v~g~-g~~iaa-----gsdD~~vK~~~~~D---~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   87 EEDTILARFTL-PIRDLAVSGS-GKMIAA-----GSDDTAVKLLNLDD---SSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             Cccceeeeeec-cceEEEEecC-CcEEEe-----ecCceeEEEEeccc---cchheeecccCCceeeeeEcCCCCEEEEE
Confidence            643 2233433 3778888877 445543     35556788888877   66777788899999999999999987764


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecC---------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-c
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R  229 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~  229 (434)
                      .   .|...+       +|.++  .. .....+.         ....+..++|+|+|..|++.  ..++.|.+|+..+ .
T Consensus       157 s---~dG~v~-------iw~~~--~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~--~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  157 S---CDGKVQ-------IWDLQ--DG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP--PVDNTVKVYSRKGWE  221 (933)
T ss_pred             e---cCceEE-------EEEcc--cc-hhhhhcccCCccccccccceeeeeeecCCCCeEEee--ccCCeEEEEccCCce
Confidence            3   333322       33332  11 1111111         13456789999999999974  3467999998863 4


Q ss_pred             eeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEE
Q 013871          230 PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       230 ~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas  298 (434)
                      ..+.+    +...++.+.|||+|+|||.++   ++|.|.|||+++.+.  ......+.+++|-|++..|-.-+
T Consensus       222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  222 LQFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             eheeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEe
Confidence            44444    344489999999999999998   778999999997332  11122566699999987655444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=3.2e-17  Score=162.59  Aligned_cols=235  Identities=16%  Similarity=0.226  Sum_probs=155.2

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecC----------CeeEEEEeCCCCCeEE-EEecCCC-CC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVP----------GVAAFEVSKAPGSHVA-VFVPESK-GS  116 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~----------~v~~~~~sp~~~~~ia-~~~~~~~-~~  116 (434)
                      ..| ++.||+||+|||+++ |+.|+||.+-+............          .+.....++.  ..-. .-.+... ..
T Consensus       269 aIw-~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~--~~~~~~s~~~~~~~s  345 (712)
T KOG0283|consen  269 AIW-AMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEE--KISSRTSSSRKGSQS  345 (712)
T ss_pred             cEE-EEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccc--cccccccccccccCC
Confidence            556 999999999999985 67999999865222110000000          0000001110  0000 0000000 11


Q ss_pred             CceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC
Q 013871          117 PASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE  195 (434)
Q Consensus       117 ~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~  195 (434)
                      +. +. .....+. ..+|++...+|.+++..+.||.++- |   .+...|+|.+       ||.+   +..+|.-.+.|.
T Consensus       346 ~~-~~-~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~f-L---LSSSMDKTVR-------LWh~---~~~~CL~~F~Hn  409 (712)
T KOG0283|consen  346 PC-VL-LPLKAFVFSEKPFCEFKGHTADILDLSWSKNNF-L---LSSSMDKTVR-------LWHP---GRKECLKVFSHN  409 (712)
T ss_pred             cc-cc-CCCccccccccchhhhhccchhheecccccCCe-e---EeccccccEE-------eecC---CCcceeeEEecC
Confidence            11 11 1111110 1678888889999999999998753 2   2344788887       4444   344677777889


Q ss_pred             CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .-|++|+|+| |.++|+  +|+-|++++||++....+...  -..-|++++|+|||++.++|.   ..|.++||++...+
T Consensus       410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt---~~G~C~fY~t~~lk  484 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGT---FNGYCRFYDTEGLK  484 (712)
T ss_pred             CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEE---eccEEEEEEccCCe
Confidence            9999999999 555666  899999999999976666655  257899999999999999999   66899999999876


Q ss_pred             EEEEee----------CCCceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee
Q 013871          273 QLGTTR----------AECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i~~~~----------~~~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .....+          ++.++.+++.|... .+++.+.      |..|||+|.
T Consensus       485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------DSrIRI~d~  531 (712)
T KOG0283|consen  485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------DSRIRIYDG  531 (712)
T ss_pred             EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC------CCceEEEec
Confidence            554332          23577788886543 4777777      999999997

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.76  E-value=1.4e-15  Score=150.42  Aligned_cols=312  Identities=16%  Similarity=0.203  Sum_probs=195.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~~   79 (434)
                      |+++.=||-=..++.+.     .++.|.|+++..++.+.+|.+..   ..++.+.|.-||..+... . .|.+.+||++.
T Consensus       205 IT~ieqsPaLDVVaiG~-----~~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~  276 (910)
T KOG1539|consen  205 ITAIEQSPALDVVAIGL-----ENGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK  276 (910)
T ss_pred             eeEeccCCcceEEEEec-----cCceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence            44444455444555444     78999999999999999998853   678899999999865544 3 47999999987


Q ss_pred             CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE--EcCCCCCCCceeeeeecccceeEEEEC-CCCCe
Q 013871           80 FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY--ACGKDLQSQPLARRSFFRCSTVQLNWN-RGSTG  155 (434)
Q Consensus        80 ~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~--~~~~~~~~~~i~~~~~~~~~~~~~~ws-~~G~~  155 (434)
                      .......+ .|..+|....+-|+ .+.+..     .+.+..+++|  |..... .+.++.+.+|.+.-.++++- .+|..
T Consensus       277 kkl~~v~~nah~~sv~~~~fl~~-epVl~t-----a~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  277 KKLINVTRNAHYGSVTGATFLPG-EPVLVT-----AGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             CeeeeeeeccccCCcccceecCC-CceEee-----ccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEE
Confidence            54332222 55566777776665 333321     1222333333  322211 23344444444444444443 22222


Q ss_pred             EEEEEEecccccCcee--------------------------------------------------------ecceeEEE
Q 013871          156 LLAVAQSDVDKTNQSY--------------------------------------------------------YGESKLNY  179 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~--------------------------------------------------------~g~~~l~~  179 (434)
                      ++. +.  .|.+-+++                                                        .|+..++.
T Consensus       350 ils-a~--~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t  426 (910)
T KOG1539|consen  350 ILS-AK--QDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT  426 (910)
T ss_pred             EEe-cc--cCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence            211 11  11111100                                                        12222233


Q ss_pred             EeeCCcceeeeecCCC------CCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe-----CCcCeeEEEECCC
Q 013871          180 LTTDGTHEGLVPLRKE------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK  247 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~------~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~-----~~~~~~~i~~SP~  247 (434)
                      ++..........|++.      ..+.+++.++-|+..++  |+..+.|.+|+++... ..+|     |.+++..++..--
T Consensus       427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~  504 (910)
T KOG1539|consen  427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGT  504 (910)
T ss_pred             EeccCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCC
Confidence            3322222222333332      56788999988865553  7888999999997543 3334     7889999999888


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCEEEEE-----------------------------------------eeCC--CceE
Q 013871          248 GKFLCLAGFGNLPGDMAFWDYVDGKQLGT-----------------------------------------TRAE--CSVT  284 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-----------------------------------------~~~~--~~~~  284 (434)
                      ++.+++++   .+|.+.+||.+++..+..                                         +.+|  .++.
T Consensus       505 n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  505 NRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD  581 (910)
T ss_pred             CceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence            89999998   778999999886542221                                         2223  4566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeecc-cceeeEEEcCCCCCCCC
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~~-~~~~~~w~p~~~~~~~~  342 (434)
                      ++|||||+.|++|+.      |++|++||+ +|.++-....+ ....+.++|.+..|...
T Consensus       582 ~~FS~DgrWlisasm------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~  635 (910)
T KOG1539|consen  582 MTFSPDGRWLISASM------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV  635 (910)
T ss_pred             eEeCCCCcEEEEeec------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence            899999999999999      999999998 67777666554 56778888888776665

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.76  E-value=2.9e-16  Score=145.89  Aligned_cols=265  Identities=12%  Similarity=0.153  Sum_probs=184.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe-e-------------c-CcCCCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF-Q-------------K-NMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~-~-------------~-~~~~~~~~~~~~S~d~~~la~   66 (434)
                      |.+|.+|||++|..+++     .++.|.=|++.+|...+-+. .             . ..|...+.+++.|+||+|||+
T Consensus       145 ~~~vals~d~~~~fsas-----k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSAS-----KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             ceEEEeeccccceeecC-----CCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            67999999999999998     78899999999987542111 1             0 023345568999999999999


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +. +..|+||+..+.+.....+.|-..|.+++|=-+.+.+++      .+.+..|++|++..   ..-+.+.-.|...+.
T Consensus       220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys------~s~Drsvkvw~~~~---~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS------ASADRSVKVWSIDQ---LSYVETLYGHQDGVL  290 (479)
T ss_pred             cCCCceEEEecCcccchhhcccccccceeeeeeecCccceee------eecCCceEEEehhH---hHHHHHHhCCcccee
Confidence            95 669999999987765556677777888877665444443      35677899999977   455555555666665


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      .+.-...+..+.+   ...|.+.+.       |.+   ......+-....+.+-+++|- +..+|+  +|+++|.|.||+
T Consensus       291 ~IdaL~reR~vtV---GgrDrT~rl-------wKi---~eesqlifrg~~~sidcv~~I-n~~Hfv--sGSdnG~IaLWs  354 (479)
T KOG0299|consen  291 GIDALSRERCVTV---GGRDRTVRL-------WKI---PEESQLIFRGGEGSIDCVAFI-NDEHFV--SGSDNGSIALWS  354 (479)
T ss_pred             eechhcccceEEe---ccccceeEE-------Eec---cccceeeeeCCCCCeeeEEEe-ccccee--eccCCceEEEee
Confidence            5554444443322   235666553       333   111122222336788889987 456777  699999999999


Q ss_pred             c-ccceeEEe---C---Cc--------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC-CceEE
Q 013871          226 K-KCRPILEL---G---SG--------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTS  285 (434)
Q Consensus       226 ~-~~~~~~~~---~---~~--------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~-~~~~~  285 (434)
                      + +..+++..   |   ..        -+++++-.|...++|+|+   .+|.|++|-+.++    ..+..+... .+..+
T Consensus       355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS---~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl  431 (479)
T KOG0299|consen  355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGS---WSGCVRLWKIEDGLRAINLLYSLSLVGFVNSL  431 (479)
T ss_pred             ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecC---CCCceEEEEecCCccccceeeecccccEEEEE
Confidence            8 55666643   1   11        578899999999999988   5689999999877    344444433 44559


Q ss_pred             EECCCCCEEEEEEc
Q 013871          286 EWSPDGRYFMTATT  299 (434)
Q Consensus       286 ~wspdg~~l~tas~  299 (434)
                      +|+++|++|++|..
T Consensus       432 ~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  432 AFSNSGKRIVAGIG  445 (479)
T ss_pred             EEccCCCEEEEecc
Confidence            99999998877754

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.76  E-value=1.6e-16  Score=143.17  Aligned_cols=261  Identities=13%  Similarity=0.146  Sum_probs=195.8

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |..-++|+++-|-+.+|++++ |.+|.|||+...........+++.|..+++|+- .+++-     +.+.+..|+-||+.
T Consensus       150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~r-HpYlF-----s~gedk~VKCwDLe  223 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKR-HPYLF-----SAGEDKQVKCWDLE  223 (460)
T ss_pred             ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeeccc-CceEE-----EecCCCeeEEEech
Confidence            346678999999999999995 679999999987665556667888999999987 44443     23677899999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      .   ++.|+....|-..+.++...|.-..|   .+...|.+.+.|+       +.+  .....+...+..+|.++.+.|.
T Consensus       224 ~---nkvIR~YhGHlS~V~~L~lhPTldvl---~t~grDst~RvWD-------iRt--r~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  224 Y---NKVIRHYHGHLSGVYCLDLHPTLDVL---VTGGRDSTIRVWD-------IRT--RASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             h---hhhHHHhccccceeEEEeccccceeE---EecCCcceEEEee-------ecc--cceEEEecCCCCcceeEEeecC
Confidence            8   88999888888999999999876543   3344666666443       321  1122223336889999999998


Q ss_pred             CCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce
Q 013871          207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV  283 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~  283 (434)
                      ..+++  +|++|++|++||++.. ....+  |+..+.+++.+|....+|+++.+|    |+-|++-.++.+..+.+|..+
T Consensus       289 dpqvi--t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f~~nlsgh~~i  362 (460)
T KOG0285|consen  289 DPQVI--TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEFLQNLSGHNAI  362 (460)
T ss_pred             CCceE--EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc----ceeccCCccchhhccccccce
Confidence            87777  7999999999999643 33333  788899999999999999998764    999999999999888888443


Q ss_pred             --EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee-----c------ccceeeEEEcCCCCCCCC
Q 013871          284 --TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM-----F------DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       284 --~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~-----~------~~~~~~~w~p~~~~~~~~  342 (434)
                        .++-..|| ++++|+.      .+.+..||+.....|+.-     .      ..++..+|...+..|++.
T Consensus       363 intl~~nsD~-v~~~G~d------ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~  427 (460)
T KOG0285|consen  363 INTLSVNSDG-VLVSGGD------NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG  427 (460)
T ss_pred             eeeeeeccCc-eEEEcCC------ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence              37777775 5567776      778999999554333321     1      136777788777777765

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.76  E-value=4.3e-16  Score=151.47  Aligned_cols=304  Identities=12%  Similarity=0.174  Sum_probs=212.8

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeee------------ecCCCcEEEEec
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIR------------FSSDEAVACRMA   68 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~------------~S~d~~~la~~~   68 (434)
                      ++.|+|....|...-     .|..|.|||+.+-..+   +.+..++.  ..| .+.            --|-+.+..+..
T Consensus       329 A~~Fdet~~klscVY-----ndhSlYvWDvrD~~kvgk~~s~lyHS~--ciW-~Ve~~p~nv~~~~~aclp~~cF~TCSs  400 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVY-----NDHSLYVWDVRDVNKVGKCSSMLYHSA--CIW-DVENLPCNVHSPTAACLPRGCFTTCSS  400 (1080)
T ss_pred             EEEecCCCceEEEEE-----cCceEEEEeccccccccceeeeeeccc--eee-eeccccccccCcccccCCccceeEecC
Confidence            678999999988766     7999999999764432   33333321  233 211            123455666668


Q ss_pred             CCeEEEEeCCCCCCceee----------ee---------------------------ecCCeeEEEEeCCCCCeEEEEec
Q 013871           69 TNEIQFFDTTDFPKGILY----------RL---------------------------RVPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~----------~~---------------------------~~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      |++|++|++.........          ++                           .--+++++++||+ +.++|    
T Consensus       401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~-gqhLA----  475 (1080)
T KOG1408|consen  401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD-GQHLA----  475 (1080)
T ss_pred             CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC-cceec----
Confidence            999999998541111110          00                           0116889999998 66776    


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                       ++..-|.+++|++.+   -...+....|..++.++.++..-...-++++...|.         -||.+++...+....+
T Consensus       476 -sGDr~GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR---------lIHV~Dv~rny~l~qt  542 (1080)
T KOG1408|consen  476 -SGDRGGNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR---------LIHVYDVKRNYDLVQT  542 (1080)
T ss_pred             -ccCccCceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCCc---------eEEEEecccccchhhh
Confidence             456678999999988   677778888999999998876432222233333332         2566677666665556


Q ss_pred             cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc----ce-----eEEeCCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871          192 LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC----RP-----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       192 l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~----~~-----~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      ++ +...|.++.|..+|-.+-++++.-|..+ .|+...    ..     ...+.+..+..++.-|..++++++.   .|.
T Consensus       543 ld~HSssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDr  618 (1080)
T KOG1408|consen  543 LDGHSSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDR  618 (1080)
T ss_pred             hcccccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---ccc
Confidence            65 4789999999998866665566666444 444321    11     1223456677899999999999999   455


Q ss_pred             eEEEEEccCCEEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEE
Q 013871          262 DMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWK  333 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~  333 (434)
                      +|+|||++++++...|++.     ..+-+...|.|-||+|..+      |.++.++|| +|+++..+  +.+-+..+.|.
T Consensus       619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~  692 (1080)
T KOG1408|consen  619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFL  692 (1080)
T ss_pred             ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeec
Confidence            9999999999999999763     3445899999999999999      999999998 67776654  55678899999


Q ss_pred             cCCCCCCCCc
Q 013871          334 PVSPDKFGDI  343 (434)
Q Consensus       334 p~~~~~~~~~  343 (434)
                      ++...|++..
T Consensus       693 nDCkHlISvs  702 (1080)
T KOG1408|consen  693 NDCKHLISVS  702 (1080)
T ss_pred             ccchhheeec
Confidence            9999888753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.75  E-value=8.9e-18  Score=144.55  Aligned_cols=216  Identities=14%  Similarity=0.186  Sum_probs=156.6

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-eeeeeecCCeeEEEEeCC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKA  101 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~  101 (434)
                      .|=+-+|||..+|.++++|.++    -.+..++|+.|.++|++++. .-++|||++..... .....+..+|+.+.|.-.
T Consensus        79 adftakvw~a~tgdelhsf~hk----hivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e  154 (334)
T KOG0278|consen   79 ADFTAKVWDAVTGDELHSFEHK----HIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE  154 (334)
T ss_pred             ccchhhhhhhhhhhhhhhhhhh----heeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence            5667899999999999999876    56778999999999999865 58999999875532 224456678999888876


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe
Q 013871          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT  181 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~  181 (434)
                      ...++.      ...++.||+||..+   +..+.++ +++..+.++..+++|..|.+.    ...+         +.+++
T Consensus       155 D~~iLS------Sadd~tVRLWD~rT---gt~v~sL-~~~s~VtSlEvs~dG~ilTia----~gss---------V~Fwd  211 (334)
T KOG0278|consen  155 DKCILS------SADDKTVRLWDHRT---GTEVQSL-EFNSPVTSLEVSQDGRILTIA----YGSS---------VKFWD  211 (334)
T ss_pred             CceEEe------eccCCceEEEEecc---CcEEEEE-ecCCCCcceeeccCCCEEEEe----cCce---------eEEec
Confidence            433333      24567899999987   5555544 457788899999999976542    1111         22222


Q ss_pred             eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEEEecC
Q 013871          182 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       182 ~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~  257 (434)
                      ...- ......+-...|.+...+|+...|+  +|..|..++.||.. ++.+-.+   |.++|.|+.|||+|...++|+  
T Consensus       212 aksf-~~lKs~k~P~nV~SASL~P~k~~fV--aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS--  286 (334)
T KOG0278|consen  212 AKSF-GLLKSYKMPCNVESASLHPKKEFFV--AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS--  286 (334)
T ss_pred             cccc-cceeeccCccccccccccCCCceEE--ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC--
Confidence            2111 1111112245788999999885554  58889999999985 4444443   789999999999999999888  


Q ss_pred             CCCCeEEEEEccCCE
Q 013871          258 NLPGDMAFWDYVDGK  272 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~  272 (434)
                       .||+|+||.+..++
T Consensus       287 -EDGTirlWQt~~~~  300 (334)
T KOG0278|consen  287 -EDGTIRLWQTTPGK  300 (334)
T ss_pred             -CCceEEEEEecCCC
Confidence             78999999977553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.3e-14  Score=123.32  Aligned_cols=264  Identities=14%  Similarity=0.219  Sum_probs=177.1

Q ss_pred             CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCCc-----------ee----eeeecCCeeEEEEeCCCCCeEEEEecCC
Q 013871           50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPKG-----------IL----YRLRVPGVAAFEVSKAPGSHVAVFVPES  113 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~~-----------~~----~~~~~~~v~~~~~sp~~~~~ia~~~~~~  113 (434)
                      ..+++++|.|.|.+.|.+++ .+++|-..+.....           .+    .+.|...|.+.+|||+ +..|+.     
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliat-----  106 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIAT-----  106 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEe-----
Confidence            56779999999999998876 47776654332110           00    1123446999999999 667763     


Q ss_pred             CCCCceEEEEEcCCCCC--CCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCceeecceeEEEEeeCCccee
Q 013871          114 KGSPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG  188 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~--~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~  188 (434)
                      +..+..|++.......-  ...-...+.|...+..+.|-.   .|..|++.+..          |.-++|.-+...+...
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga----------gdc~iy~tdc~~g~~~  176 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA----------GDCKIYITDCGRGQGF  176 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC----------CcceEEEeecCCCCcc
Confidence            45556777776643210  112223444555666666643   23444432211          3344565554433222


Q ss_pred             eeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccce-eEE----eC-----CcCeeEEEECCCCCeEEEEecC
Q 013871          189 LVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE----LG-----SGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       189 ~v~l~~~~~i~~v-~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~----~~-----~~~~~~i~~SP~g~~l~~~~~~  257 (434)
                      ..-..+.|.|.++ .|+  |-.|+  +|+.|.+|++||++.+. +..    ++     ...+..++..|.|++|++|-  
T Consensus       177 ~a~sghtghilalyswn--~~m~~--sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~--  250 (350)
T KOG0641|consen  177 HALSGHTGHILALYSWN--GAMFA--SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH--  250 (350)
T ss_pred             eeecCCcccEEEEEEec--CcEEE--ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--
Confidence            2222346666653 564  55566  79999999999998443 222    22     35688899999999999987  


Q ss_pred             CCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee-------eecccce
Q 013871          258 NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLF  328 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~-------~~~~~~~  328 (434)
                       .+....+||++.++.+..+.-|  .+.++.|||...|++|++.      |+.|++-|++|.+-++       ++.+...
T Consensus       251 -~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy------d~~ikltdlqgdla~el~~~vv~ehkdk~i  323 (350)
T KOG0641|consen  251 -ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY------DMKIKLTDLQGDLAHELPIMVVAEHKDKAI  323 (350)
T ss_pred             -CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc------cceEEEeecccchhhcCceEEEEeccCceE
Confidence             4458999999999999998766  5667999999999999999      9999999999975443       3667899


Q ss_pred             eeEEEcCCCCCCCC
Q 013871          329 QAEWKPVSPDKFGD  342 (434)
Q Consensus       329 ~~~w~p~~~~~~~~  342 (434)
                      +..|+|+.-..++.
T Consensus       324 ~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  324 QCRWHPQDFSFISS  337 (350)
T ss_pred             EEEecCccceeeec
Confidence            99999997554443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5.3e-16  Score=145.14  Aligned_cols=261  Identities=13%  Similarity=0.182  Sum_probs=191.0

Q ss_pred             CCCCeeeecCCC-cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDE-AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+++|||.. --+|..+.-.+++|+....+......---..+.++.|-.| +..+|+     ++..|.|+||++.+ 
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~D-G~Llaa-----GD~sG~V~vfD~k~-   99 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSD-GRLLAA-----GDESGHVKVFDMKS-   99 (487)
T ss_pred             CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecC-CeEEEc-----cCCcCcEEEecccc-
Confidence            667799999954 3455556679999997664321111111245778888877 455553     56778999999655 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEECcCC
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSG  207 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~wspdg  207 (434)
                        ...+.+...|.+.+....|+|+++.+++.++  .|+..+-         +++.+... ... ..++..|.+.+|+|..
T Consensus       100 --r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s--Dd~v~k~---------~d~s~a~v-~~~l~~htDYVR~g~~~~~~  165 (487)
T KOG0310|consen  100 --RVILRQLYAHQAPVHVTKFSPQDNTMLVSGS--DDKVVKY---------WDLSTAYV-QAELSGHTDYVRCGDISPAN  165 (487)
T ss_pred             --HHHHHHHhhccCceeEEEecccCCeEEEecC--CCceEEE---------EEcCCcEE-EEEecCCcceeEeeccccCC
Confidence              5577788888999999999999998876542  3333332         22233322 222 2357899999999988


Q ss_pred             CEEEEEEccCCCeEEEEeccc--ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--C
Q 013871          208 SEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--C  281 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~--~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~  281 (434)
                      .++++ +|+-|++|++||++.  ..+.++ |..++..+.+-|.|..|++|| ||   .|+|||+-+| +.+.....|  .
T Consensus       166 ~hivv-tGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn---~vkVWDl~~G~qll~~~~~H~Kt  240 (487)
T KOG0310|consen  166 DHIVV-TGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GN---SVKVWDLTTGGQLLTSMFNHNKT  240 (487)
T ss_pred             CeEEE-ecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CC---eEEEEEecCCceehhhhhcccce
Confidence            77776 788899999999974  466777 789999999999999999987 44   7999999855 555555534  7


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.+..+++.|++++.      |+.++||+++. +.++...+ ..+..++-.|++..+.-.
T Consensus       241 VTcL~l~s~~~rLlS~sL------D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  241 VTCLRLASDSTRLLSGSL------DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEEEEeecCCceEeeccc------ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEe
Confidence            778999999999999999      99999999754 45565544 578889999977665544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.74  E-value=9.6e-16  Score=153.21  Aligned_cols=267  Identities=13%  Similarity=0.165  Sum_probs=190.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      |.++.|.  +.++.+.+     .|..|++||..++..+.. +.++.   ..+.++++..-+.++++++ |.+++|||..+
T Consensus       211 ~~~~q~~--~~~~~~~s-----~~~tl~~~~~~~~~~i~~~l~GH~---g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  211 VLCLQLH--DGFFKSGS-----DDSTLHLWDLNNGYLILTRLVGHF---GGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             hhhheee--cCeEEecC-----CCceeEEeecccceEEEeeccCCC---CCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            3455565  55666655     789999999999998877 77654   5555999987677888885 77999999888


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .........|...+..+..-+.   .+.     +++.+.+|++|++++   +..+.....|...+.++..+  +..++..
T Consensus       281 g~C~~~l~gh~stv~~~~~~~~---~~~-----sgs~D~tVkVW~v~n---~~~l~l~~~h~~~V~~v~~~--~~~lvsg  347 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTIDPF---LLV-----SGSRDNTVKVWDVTN---GACLNLLRGHTGPVNCVQLD--EPLLVSG  347 (537)
T ss_pred             CcEEEEecCCCceEEEEEccCc---eEe-----eccCCceEEEEeccC---cceEEEeccccccEEEEEec--CCEEEEE
Confidence            7766666666666776655543   111     256789999999998   88888888899999999887  5554332


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe--
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~--  234 (434)
                         ..|.+.+.|.-..         . .+.-.+ .+.+.|.++.+.+. ..++  +|.+|+.|++||++..  .+..+  
T Consensus       348 ---s~d~~v~VW~~~~---------~-~cl~sl~gH~~~V~sl~~~~~-~~~~--Sgs~D~~IkvWdl~~~~~c~~tl~~  411 (537)
T KOG0274|consen  348 ---SYDGTVKVWDPRT---------G-KCLKSLSGHTGRVYSLIVDSE-NRLL--SGSLDTTIKVWDLRTKRKCIHTLQG  411 (537)
T ss_pred             ---ecCceEEEEEhhh---------c-eeeeeecCCcceEEEEEecCc-ceEE--eeeeccceEeecCCchhhhhhhhcC
Confidence               2455665553221         1 222222 24789999988764 4555  7999999999999765  55555  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      |..-++.  ....+++|++++   .+|+|++||.++++++..+.++   .+..+++.  -..+++++.      |+.+++
T Consensus       412 h~~~v~~--l~~~~~~Lvs~~---aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~------~~~~~l  478 (537)
T KOG0274|consen  412 HTSLVSS--LLLRDNFLVSSS---ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD------DGSVKL  478 (537)
T ss_pred             Ccccccc--cccccceeEecc---ccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec------CCeeEE
Confidence            4444433  344678999888   6679999999999999998883   34445554  467888888      999999


Q ss_pred             Eee-cCceee
Q 013871          312 FHH-NGSLFF  320 (434)
Q Consensus       312 w~~-~g~~~~  320 (434)
                      ||+ +|.+..
T Consensus       479 ~dl~~~~~~~  488 (537)
T KOG0274|consen  479 WDLRSGTLIR  488 (537)
T ss_pred             EecccCchhh
Confidence            999 444444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=1.8e-15  Score=150.42  Aligned_cols=242  Identities=12%  Similarity=0.122  Sum_probs=155.4

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+||...... ....-+...+.+..|||+ +..+++...+  +....|.+|++..   +.. .....+......+.|+
T Consensus       185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpD-g~~la~~s~~--~~~~~l~~~dl~~---g~~-~~l~~~~g~~~~~~~S  256 (433)
T PRK04922        185 ALQVADSDGYNP-QTILRSAEPILSPAWSPD-GKKLAYVSFE--RGRSAIYVQDLAT---GQR-ELVASFRGINGAPSFS  256 (433)
T ss_pred             EEEEECCCCCCc-eEeecCCCccccccCCCC-CCEEEEEecC--CCCcEEEEEECCC---CCE-EEeccCCCCccCceEC
Confidence            688998765332 222223345788999999 5566554322  2245788999865   332 2333344445578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~  228 (434)
                      |||+.|++..+.+         |...||.++..+.....+. ...+...+++|+|||+++++.+. ..+  .+.++|+.+
T Consensus       257 pDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~  325 (433)
T PRK04922        257 PDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGIDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASG  325 (433)
T ss_pred             CCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCCccceEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence            9999988765332         3346888887665333222 22334567999999999997643 233  577778765


Q ss_pred             ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                      .....+  +......+.|||||++|+....++....|++||+.+++............+.|+|||++|+.++...   -.
T Consensus       326 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~---g~  402 (433)
T PRK04922        326 GSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG---GR  402 (433)
T ss_pred             CCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC---Cc
Confidence            444333  3334457899999999988764333347999999887655333333344589999999999888731   12


Q ss_pred             CcEEEEeecCceeeeee--cccceeeEEEc
Q 013871          307 NGIKIFHHNGSLFFKKM--FDKLFQAEWKP  334 (434)
Q Consensus       307 ~~i~iw~~~g~~~~~~~--~~~~~~~~w~p  334 (434)
                      ..+.+++.+|.......  ...+....|+|
T Consensus       403 ~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        403 GVLAAVSTDGRVRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence            45778888887655443  34677888887

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.74  E-value=2.2e-17  Score=149.04  Aligned_cols=269  Identities=14%  Similarity=0.231  Sum_probs=174.5

Q ss_pred             CCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           48 TKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        48 ~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      |.+++.|++=.|.. ..++++ .||+|++||+..........-|..-|..+.+...  ..+.      .|.+.+|+.|.+
T Consensus        65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~--~~~t------vgdDKtvK~wk~  136 (433)
T KOG0268|consen   65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT--SFFT------VGDDKTVKQWKI  136 (433)
T ss_pred             cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc--ceEE------ecCCcceeeeec
Confidence            55888888888876 667777 5899999999886654555566666888877752  2222      266778999997


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEEC
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWS  204 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~ws  204 (434)
                      ..    .++.+.-. +.....+.-+..+..   .+++          |+ .+.+++..... .+.+.. ....|+++.|+
T Consensus       137 ~~----~p~~tilg-~s~~~gIdh~~~~~~---FaTc----------Ge-~i~IWD~~R~~Pv~smsw-G~Dti~svkfN  196 (433)
T KOG0268|consen  137 DG----PPLHTILG-KSVYLGIDHHRKNSV---FATC----------GE-QIDIWDEQRDNPVSSMSW-GADSISSVKFN  196 (433)
T ss_pred             cC----Ccceeeec-ccccccccccccccc---cccc----------Cc-eeeecccccCCccceeec-CCCceeEEecC
Confidence            54    12221110 000011110100110   0000          11 12222222211 011111 13568889999


Q ss_pred             cCCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC-
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-  280 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~-  280 (434)
                      |....++. ++.+|+.|.|||++. .+++.. .+-.-|.|+|+|.+-.+++|.   .|..++.+|+... +.+..+.+| 
T Consensus       197 pvETsILa-s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~---ED~nlY~~DmR~l~~p~~v~~dhv  272 (433)
T KOG0268|consen  197 PVETSILA-SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAAN---EDHNLYTYDMRNLSRPLNVHKDHV  272 (433)
T ss_pred             CCcchhee-eeccCCceEEEecccCCccceeeeeccccceecCccccceeecc---ccccceehhhhhhcccchhhcccc
Confidence            97765554 566899999999974 455544 345568999999666666665   5679999999876 456666666 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----eeeeeecccceeeEEEcCCCCCCCCchhhhhccCcccc
Q 013871          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKV  355 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~----~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~  355 (434)
                       .+++++|||.|+.|++|+.      |.+|+||.+...    ..+...++.+.+|.|+-+..++++..     +-.++++
T Consensus       273 sAV~dVdfsptG~Efvsgsy------DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGS-----dd~nvRl  341 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSY------DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGS-----DDGNVRL  341 (433)
T ss_pred             eeEEEeccCCCcchhccccc------cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecC-----CCcceee
Confidence             6777999999999999999      999999999654    34556789999999999999999973     2344566


Q ss_pred             cccc
Q 013871          356 AETK  359 (434)
Q Consensus       356 ~~~~  359 (434)
                      +..+
T Consensus       342 Wka~  345 (433)
T KOG0268|consen  342 WKAK  345 (433)
T ss_pred             eecc
Confidence            6543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.74  E-value=3e-16  Score=152.50  Aligned_cols=242  Identities=12%  Similarity=0.147  Sum_probs=175.8

Q ss_pred             CCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC--CCeEEEEecCCCCCCceEEEEEc
Q 013871           49 KTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP--GSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ..++++++.||||++||++. .|+|+||++.+.+......-|...|.++++|--.  ..++|     +.+.+.-|.+|++
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-----SasrdRlIHV~Dv  533 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-----SASRDRLIHVYDV  533 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-----hccCCceEEEEec
Confidence            35678999999999999995 4799999998866545555666678888887431  12333     4566678999998


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee----cceeEEEEeeCCcceeeeecCCCCCeEEE
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~----g~~~l~~l~~~~~~~~~v~l~~~~~i~~v  201 (434)
                      ...  -..+.++..|...++.++|-..|-..- +.+...|+....-.    +...++.-       ...++ ....++++
T Consensus       534 ~rn--y~l~qtld~HSssITsvKFa~~gln~~-MiscGADksimFr~~qk~~~g~~f~r-------~t~t~-~ktTlYDm  602 (1080)
T KOG1408|consen  534 KRN--YDLVQTLDGHSSSITSVKFACNGLNRK-MISCGADKSIMFRVNQKASSGRLFPR-------HTQTL-SKTTLYDM  602 (1080)
T ss_pred             ccc--cchhhhhcccccceeEEEEeecCCceE-EEeccCchhhheehhccccCceeccc-------ccccc-ccceEEEe
Confidence            652  455667777888889999987773221 22233455432110    00011100       00011 25789999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          202 QWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      +..|+.++++  ++..|.+|+|||+. ++++..|     +.+..-.+...|.|.||++.-.   +.++.|+|.-+++++.
T Consensus       603 ~Vdp~~k~v~--t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  603 AVDPTSKLVV--TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVA  677 (1080)
T ss_pred             eeCCCcceEE--EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhh
Confidence            9999998888  57789999999996 5666666     4566778899999999999884   4599999999999999


Q ss_pred             EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       276 ~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ...+|  .++.+.|++|-++|++++.      |++|.||.+.-.
T Consensus       678 ~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~lp~~  715 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKLPLT  715 (1080)
T ss_pred             hhcCcchheeeeeecccchhheeecC------CceEEEEECchh
Confidence            98887  5556999999999999999      999999998543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.73  E-value=1.4e-15  Score=140.42  Aligned_cols=273  Identities=12%  Similarity=0.142  Sum_probs=194.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|...|....++|++     .|+++.++|-.+++.+..|.++.   ..+..+.|+++...++.++ +..|+||....-
T Consensus       222 i~ald~~~s~~~ilTGG-----~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  222 ITALDIIPSSSKILTGG-----EDKTAVLFDKPSNQILATLKGHT---KKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             eeEEeecCCCCcceecC-----CCCceEEEecchhhhhhhccCcc---eEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            34566666667888877     89999999999999999988764   5666889999999888875 559999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~  158 (434)
                      ........|.+.|+.+..+|.++++++.      ..++.....++.+   +..+...+-  ...+..+..++|||-.+..
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsA------s~d~~w~Fsd~~~---g~~lt~vs~~~s~v~~ts~~fHpDgLifgt  364 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSA------SNDGTWAFSDISS---GSQLTVVSDETSDVEYTSAAFHPDGLIFGT  364 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEe------cCCceEEEEEccC---CcEEEEEeeccccceeEEeeEcCCceEEec
Confidence            6555566777889999999997665542      3455667777776   555554443  2345678899999964322


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe---
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~---  234 (434)
                         ...|...       .+|.+.... ....++- +.++|..++|+-+|-++++  +..|+.|.+||++... ..++   
T Consensus       365 ---gt~d~~v-------kiwdlks~~-~~a~Fpg-ht~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~  430 (506)
T KOG0289|consen  365 ---GTPDGVV-------KIWDLKSQT-NVAKFPG-HTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLD  430 (506)
T ss_pred             ---cCCCceE-------EEEEcCCcc-ccccCCC-CCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeecc
Confidence               1133333       344442222 1223333 5899999999999988885  6678889999997432 2233   


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCEEEEEeeCCC--ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~~i~~~~~~~--~~~~~wspdg~~l~tas~~prl~~D~~i~  310 (434)
                      ....++++.|.+.|.+|+++|   .+=+|++++-.  +..++..+..|.  .+.+.|.-+-+++++++.      |..++
T Consensus       431 ~~~~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm------d~~l~  501 (506)
T KOG0289|consen  431 EKKEVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM------DAILR  501 (506)
T ss_pred             ccccceeEEEcCCCCeEEeec---ceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc------hhheE
Confidence            345799999999999999996   32355555533  456777666653  344899999999999998      88888


Q ss_pred             EEee
Q 013871          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      |+.+
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.73  E-value=2e-16  Score=148.17  Aligned_cols=274  Identities=14%  Similarity=0.155  Sum_probs=202.7

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD   76 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~   76 (434)
                      +|.++..|-..+++.|++      .+-|+|||+..-   ..+..+...+ -..-++++...|||+-|+.++. .+|-|||
T Consensus       421 vVcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivGGeastlsiWD  493 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVGGEASTLSIWD  493 (705)
T ss_pred             EEEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEeccccceeeeee
Confidence            367788898899998877      467999998532   2233332221 1144567789999998888754 6999999


Q ss_pred             CCCCCCceeeeeec--CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           77 TTDFPKGILYRLRV--PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      +..........+..  .....+++|||.+--+++      ..++.|.|||+.+   ...+++...|.....++..++||+
T Consensus       494 LAapTprikaeltssapaCyALa~spDakvcFsc------csdGnI~vwDLhn---q~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSC------CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             ccCCCcchhhhcCCcchhhhhhhcCCccceeeee------ccCCcEEEEEccc---ceeeecccCCCCCceeEEecCCCc
Confidence            98755433333443  345667788874433343      3457899999988   788999999999999999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  234 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~  234 (434)
                      .   +++...|.+.+.|+-...          ......+-...|.++..+|++.+++|  |-..+.+.+........+.+
T Consensus       565 k---lWTGGlDntvRcWDlreg----------rqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp~kyql  629 (705)
T KOG0639|consen  565 K---LWTGGLDNTVRCWDLREG----------RQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKPEKYQL  629 (705)
T ss_pred             e---eecCCCccceeehhhhhh----------hhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCccceee
Confidence            8   466668888887642211          11111112568899999999999996  77777899988876666655


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                        |..-|.++.|++.|+++++.|.||   -+..|-+--|..|..... ..+++|..|-|.+||+|++.      |....|
T Consensus       630 hlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSG------dkkATV  700 (705)
T KOG0639|consen  630 HLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSG------DKKATV  700 (705)
T ss_pred             cccccEEEEEEecccCceeeecCchh---hhhhccCccccceeeccccCcceeeeeccCceEEEecCC------CcceEE
Confidence              677789999999999999999666   788998887876665554 47778999999999999998      877777


Q ss_pred             Eee
Q 013871          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      |.+
T Consensus       701 YeV  703 (705)
T KOG0639|consen  701 YEV  703 (705)
T ss_pred             EEE
Confidence            654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.73  E-value=3.3e-16  Score=151.14  Aligned_cols=268  Identities=13%  Similarity=0.179  Sum_probs=184.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |..++|-|||+.|+...      +..+.|||+.+|..+.++.++.   +.+.+++||.||+.+|+++ |..|.+|+..-.
T Consensus        15 i~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHK---DtVycVAys~dGkrFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYAKDGKRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             hheeEECCCCceEEEec------CCEEEEEeCCCccccccccccc---ceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence            56799999999998765      5789999999999999987754   7777999999999999995 568999986542


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        +.....|.+.|.++.|.|.. ..++..      .-+..-+|+...   ...+..+  ....+++.+|+.||+++++..
T Consensus        86 --G~LkYSH~D~IQCMsFNP~~-h~LasC------sLsdFglWS~~q---K~V~K~k--ss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   86 --GILKYSHNDAIQCMSFNPIT-HQLASC------SLSDFGLWSPEQ---KSVSKHK--SSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             --ceeeeccCCeeeEeecCchH-HHhhhc------chhhccccChhh---hhHHhhh--hheeEEEeeecCCCcEEEEec
Confidence              24456677889999999973 333321      112345666543   2222221  234567889999999987642


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCC-----EEEEEEccCCCeEEEEecccceeEE
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-----EFAVVYGFMPASATIFNKKCRPILE  233 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~-----~~av~~g~~~~~v~l~d~~~~~~~~  233 (434)
                         .+.+         +-.-+..+....++.-  ..+.+|.+++|+|...     .++|+  +...++.+|.+.+..+-.
T Consensus       152 ---~nGT---------IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~--DW~qTLSFy~LsG~~Igk  217 (1081)
T KOG1538|consen  152 ---FNGT---------ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA--DWGQTLSFYQLSGKQIGK  217 (1081)
T ss_pred             ---cCce---------EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE--eccceeEEEEecceeecc
Confidence               1111         1111222222222221  1267999999999643     44543  344577788777766542


Q ss_pred             e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          234 L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       234 ~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                      -  -.-.-.||.|-|+|.|+++||   .++.+.+|-. .|-.+.+...  +.+++++-.|+|++++.|..      ||+|
T Consensus       218 ~r~L~FdP~CisYf~NGEy~LiGG---sdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq------DGTi  287 (1081)
T KOG1538|consen  218 DRALNFDPCCISYFTNGEYILLGG---SDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ------DGTI  287 (1081)
T ss_pred             cccCCCCchhheeccCCcEEEEcc---CCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc------cCee
Confidence            1  122336899999999999999   5568999854 5666666543  47778999999999999999      9999


Q ss_pred             EEEeecC
Q 013871          310 KIFHHNG  316 (434)
Q Consensus       310 ~iw~~~g  316 (434)
                      -.|++--
T Consensus       288 ACyNl~f  294 (1081)
T KOG1538|consen  288 ACYNLIF  294 (1081)
T ss_pred             ehhhhHH
Confidence            9998743

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.5e-16  Score=138.43  Aligned_cols=228  Identities=15%  Similarity=0.256  Sum_probs=145.9

Q ss_pred             cEEEEEcCCCcEEEEEee--cCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee----eeecCCeeEEEEe
Q 013871           27 NVILWKTETGEAVYQLFQ--KNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY----RLRVPGVAAFEVS   99 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~--~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~----~~~~~~v~~~~~s   99 (434)
                      ...-|+......++.+..  ...|...+++++||.||++||++. |+.|++|++.+|......    .+..+.-+.+.|+
T Consensus        62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fa  141 (420)
T KOG2096|consen   62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFA  141 (420)
T ss_pred             chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEEC
Confidence            345565544433332211  122568889999999999999985 679999999987643221    2233456678888


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      || ...+.++...    ...+++|.+...                      .||..-                    ++.
T Consensus       142 pD-c~s~vv~~~~----g~~l~vyk~~K~----------------------~dG~~~--------------------~~~  174 (420)
T KOG2096|consen  142 PD-CKSVVVSVKR----GNKLCVYKLVKK----------------------TDGSGS--------------------HHF  174 (420)
T ss_pred             CC-cceEEEEEcc----CCEEEEEEeeec----------------------ccCCCC--------------------ccc
Confidence            88 4444444331    135555555331                      112210                    111


Q ss_pred             EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcC--eeEEEECCCCCeEEEEecC
Q 013871          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~--~~~i~~SP~g~~l~~~~~~  257 (434)
                      +..+..   .++-.+.-+|.++-...++++++  +...+.+|.|||++++.+..+.+..  -...+.||+|++|+++||.
T Consensus       175 v~~D~~---~f~~kh~v~~i~iGiA~~~k~im--sas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFT  249 (420)
T KOG2096|consen  175 VHIDNL---EFERKHQVDIINIGIAGNAKYIM--SASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT  249 (420)
T ss_pred             cccccc---ccchhcccceEEEeecCCceEEE--EecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCC
Confidence            111100   00011134555666666666666  6777889999999988887775333  3457899999999999977


Q ss_pred             CCCCeEEEEEcc---CC-----EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          258 NLPGDMAFWDYV---DG-----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       258 ~~~g~i~iwd~~---~~-----~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      -   +|.+|..-   +|     +.+..+.+|  .+..++|||+.+.++|++.      ||++||||.+
T Consensus       250 p---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk------DG~wriwdtd  308 (420)
T KOG2096|consen  250 P---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK------DGKWRIWDTD  308 (420)
T ss_pred             C---CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec------CCcEEEeecc
Confidence            5   89999853   33     234456666  5666999999999999999      9999999974

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.73  E-value=2.2e-15  Score=149.64  Aligned_cols=236  Identities=14%  Similarity=0.160  Sum_probs=153.2

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .+|.+||...... .....+...+.++.|||+ +..+++...+  +....|.+|++.+   +... ....+......+.|
T Consensus       184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~i~i~dl~t---g~~~-~l~~~~g~~~~~~w  255 (429)
T PRK01742        184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPD-GSKLAYVSFE--NKKSQLVVHDLRS---GARK-VVASFRGHNGAPAF  255 (429)
T ss_pred             EEEEEECCCCCCc-eEeccCCCccccceEcCC-CCEEEEEEec--CCCcEEEEEeCCC---CceE-EEecCCCccCceeE
Confidence            4899999866442 222233345889999999 5556543322  2245789999865   3322 22223334457899


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--c
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K  227 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--~  227 (434)
                      +|||+.|++..+.+         |...||.++..+.....++ ...+.+.+++|+|||+.+++.+ ..++...||++  .
T Consensus       256 SPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~  324 (429)
T PRK01742        256 SPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGNNTEPSWSPDGQSILFTS-DRSGSPQVYRMSAS  324 (429)
T ss_pred             CCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCCcCCEEECCCCCEEEEEE-CCCCCceEEEEECC
Confidence            99999988754221         3345888887665433332 2345678899999999988753 34555666654  3


Q ss_pred             cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          228 CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       228 ~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      +.....+.... ..+.|||||++|++++.+    .+.+||+.+++............+.|+|||++|++++.      ++
T Consensus       325 ~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~----~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~------~g  393 (429)
T PRK01742        325 GGGASLVGGRG-YSAQISADGKTLVMINGD----NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST------QG  393 (429)
T ss_pred             CCCeEEecCCC-CCccCCCCCCEEEEEcCC----CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc------CC
Confidence            33333332222 457899999999887642    47779998886443333333345889999999999998      88


Q ss_pred             cEEEEee---cCceeeeee--cccceeeEEEcC
Q 013871          308 GIKIFHH---NGSLFFKKM--FDKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~---~g~~~~~~~--~~~~~~~~w~p~  335 (434)
                      ++.+|.+   +|+......  ...+...+|+|.
T Consensus       394 ~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        394 LGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            8777764   687766553  346888999986

>PTZ00420 coronin; Provisional

Probab=99.73  E-value=4.9e-15  Score=148.71  Aligned_cols=195  Identities=12%  Similarity=0.156  Sum_probs=135.9

Q ss_pred             EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCCc-
Q 013871          108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-  185 (434)
Q Consensus       108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-  185 (434)
                      .|....++..+.+++|+...   ..++.....|...+..+.|+|+ +..| +.  ...|.+.+.|       .+...+. 
T Consensus        44 ~w~~~gGG~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lL-AS--gS~DgtIrIW-------Di~t~~~~  110 (568)
T PTZ00420         44 PWEVEGGGLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEIL-AS--GSEDLTIRVW-------EIPHNDES  110 (568)
T ss_pred             EEEcCCCCceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEE-EE--EeCCCeEEEE-------ECCCCCcc
Confidence            34445567788999999876   5677778889999999999997 4543 32  2345555433       3321110 


Q ss_pred             ----ceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-CCcCeeEEEECCCCCeEEEEecCC
Q 013871          186 ----HEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       186 ----~~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                          ...... ..+...|.+++|+|++..+++ +++.|+.|+|||++.. .+..+ +...+.++.|+|+|++|++++   
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa-SgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s---  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYYIMC-SSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC---  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCeEEE-EEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---
Confidence                011111 235678999999999887654 5667899999999743 34444 567899999999999999887   


Q ss_pred             CCCeEEEEEccCCEEEEEeeCCCc---eE----EEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeee
Q 013871          259 LPGDMAFWDYVDGKQLGTTRAECS---VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFK  321 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~~~---~~----~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~  321 (434)
                      .++.|+|||+++++.+..+.+|.-   ..    ..|++|+.+|++++.+..  .++.|+|||+.  +..+..
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~  256 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVT  256 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEE
Confidence            456999999999998888877631   11    345799999999887210  02479999986  344443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.72  E-value=3.9e-14  Score=133.11  Aligned_cols=296  Identities=13%  Similarity=0.147  Sum_probs=196.9

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEE---EeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQ---LFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~---~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |....|.|.+ +.++|++      .+.+..|+.+.+....+   |...  ++.-+.|++|.++|..+-.-+++.|.||+.
T Consensus       203 v~~a~FHPtd~nliit~G------k~H~~Fw~~~~~~l~k~~~~fek~--ekk~Vl~v~F~engdviTgDS~G~i~Iw~~  274 (626)
T KOG2106|consen  203 VFLATFHPTDPNLIITCG------KGHLYFWTLRGGSLVKRQGIFEKR--EKKFVLCVTFLENGDVITGDSGGNILIWSK  274 (626)
T ss_pred             EEEEEeccCCCcEEEEeC------CceEEEEEccCCceEEEeeccccc--cceEEEEEEEcCCCCEEeecCCceEEEEeC
Confidence            5677899966 5555665      57899999988866443   3322  346678999999999887668899999998


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ...........|..+|.++.+--+ +.++      +++.+..|.+|+ .+....+++..-. ....+..+.=+. +. |+
T Consensus       275 ~~~~~~k~~~aH~ggv~~L~~lr~-Gtll------SGgKDRki~~Wd-~~y~k~r~~elPe-~~G~iRtv~e~~-~d-i~  343 (626)
T KOG2106|consen  275 GTNRISKQVHAHDGGVFSLCMLRD-GTLL------SGGKDRKIILWD-DNYRKLRETELPE-QFGPIRTVAEGK-GD-IL  343 (626)
T ss_pred             CCceEEeEeeecCCceEEEEEecC-ccEe------ecCccceEEecc-ccccccccccCch-hcCCeeEEecCC-Cc-EE
Confidence            653322223355667887776665 2333      267888999999 3322122221111 112222332222 12 44


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-eCC
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS  236 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~~~  236 (434)
                      +.++..            .|..=.+.+.+. .+.+.+......++-+|+..+|+  ++..|+.+.||+ +.+.+.+ .-.
T Consensus       344 vGTtrN------------~iL~Gt~~~~f~-~~v~gh~delwgla~hps~~q~~--T~gqdk~v~lW~-~~k~~wt~~~~  407 (626)
T KOG2106|consen  344 VGTTRN------------FILQGTLENGFT-LTVQGHGDELWGLATHPSKNQLL--TCGQDKHVRLWN-DHKLEWTKIIE  407 (626)
T ss_pred             Eeeccc------------eEEEeeecCCce-EEEEecccceeeEEcCCChhhee--eccCcceEEEcc-CCceeEEEEec
Confidence            433221            111112223322 22233455788999999999998  678899999999 4444443 357


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-  314 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-  314 (434)
                      .+..++.|+|.| .+++|.   ..|...+.|.++...+...... ..+.+.++|||.+||.|+.      ||.|.||.+ 
T Consensus       408 d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~------d~~iyiy~Vs  477 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGT---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH------DNHIYIYRVS  477 (626)
T ss_pred             CceeEeeccCcc-eEEEee---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC------CCeEEEEEEC
Confidence            788999999999 888777   6689999999997666554443 5566999999999999999      999999998 


Q ss_pred             -cCceeeee---ecccceeeEEEcCCCCCCCC
Q 013871          315 -NGSLFFKK---MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       315 -~g~~~~~~---~~~~~~~~~w~p~~~~~~~~  342 (434)
                       +|..+...   +-..+-.+.|+++..++.+.
T Consensus       478 ~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  478 ANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             CCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence             45544332   22568899999999887765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.72  E-value=5.9e-15  Score=146.96  Aligned_cols=247  Identities=12%  Similarity=0.123  Sum_probs=158.1

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .....+...+....|||+ +..|++.....  ....|.+|++..   +. ...++.+........|+
T Consensus       183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpD-G~~lay~s~~~--g~~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~S  254 (435)
T PRK05137        183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPN-RQEITYMSYAN--GRPRVYLLDLET---GQ-RELVGNFPGMTFAPRFS  254 (435)
T ss_pred             EEEEECCCCCCc-EEEecCCCCeEeeEECCC-CCEEEEEEecC--CCCEEEEEECCC---Cc-EEEeecCCCcccCcEEC
Confidence            788888755332 223334456889999999 55666554332  236899999976   33 23444455566688999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.++..+.....++ ...+.....+|+|||+++++.+... ...|+++|+.+.
T Consensus       255 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~  324 (435)
T PRK05137        255 PDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS  324 (435)
T ss_pred             CCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence            9999987764321         3346888887765433332 2244566799999999999765321 237888898766


Q ss_pred             eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      ....+  +.+......|||||++|+....+.....|.+||+.++.............+.|||||++|+.++....-.-..
T Consensus       325 ~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        325 NPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             CeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            55544  3455677899999999998775433357899998665432222333445589999999999877621100002


Q ss_pred             cEEEEeecCceeeeeec-ccceeeEEEcC
Q 013871          308 GIKIFHHNGSLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~~g~~~~~~~~-~~~~~~~w~p~  335 (434)
                      .+.+.+++|........ ..+...+|.|.
T Consensus       405 ~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        405 KLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             eEEEEECCCCceEEccCCCCccCcccCCC
Confidence            56777777765443322 24566777764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.72  E-value=2.2e-15  Score=139.01  Aligned_cols=225  Identities=13%  Similarity=0.183  Sum_probs=162.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      .++..+.-.+....+++++ |.++.+||.+........+.|...|..+.++|+... +.     ....+..|+||..+. 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~-v~-----~aSad~~i~vws~~~-  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT-VI-----TASADEIIRVWSVPL-  292 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh-ee-----ecCCcceEEeecccc-
Confidence            3444556666656667775 459999999887666667777778999999998432 22     234556899999998 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCC
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG  207 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg  207 (434)
                        .+.......|...+..+.-+|.|.|++..   +.|++...+       .+.. +..-..+.-+ .+-.+++.+|+|||
T Consensus       293 --~s~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fs-------d~~~-g~~lt~vs~~~s~v~~ts~~fHpDg  359 (506)
T KOG0289|consen  293 --SSEPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFS-------DISS-GSQLTVVSDETSDVEYTSAAFHPDG  359 (506)
T ss_pred             --ccCccccccccccceeeeeccCCcEEEEe---cCCceEEEE-------EccC-CcEEEEEeeccccceeEEeeEcCCc
Confidence              55556666788888899999999997542   233332221       1111 1111111111 13458899999999


Q ss_pred             CEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---C
Q 013871          208 SEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---C  281 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~  281 (434)
                      -.|+  +|.+|+.++|||++.. .+..|  |.++|.+|.|+-+|-||+++.   .||.|.+||++..+...++.-.   .
T Consensus       360 Lifg--tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~  434 (506)
T KOG0289|consen  360 LIFG--TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKE  434 (506)
T ss_pred             eEEe--ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeecccccc
Confidence            8877  7999999999999743 34455  899999999999999999998   5678999999987766666554   4


Q ss_pred             ceEEEECCCCCEEEEEEc
Q 013871          282 SVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~  299 (434)
                      +..+.|.+.|.+|+.++.
T Consensus       435 v~s~~fD~SGt~L~~~g~  452 (506)
T KOG0289|consen  435 VNSLSFDQSGTYLGIAGS  452 (506)
T ss_pred             ceeEEEcCCCCeEEeecc
Confidence            778999999999999976

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=4.3e-15  Score=141.45  Aligned_cols=303  Identities=16%  Similarity=0.232  Sum_probs=172.5

Q ss_pred             CcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013871           26 KNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        26 ~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      ..+.+|+...-. ....|.... ........++|++|+++|...+..+.|++.....  .........+.++.+||. +.
T Consensus        11 e~~~l~~~~~~~~~~~~f~~~~-~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~-g~   86 (566)
T KOG2315|consen   11 EGFYLFNGPGSKDAVTVFEQNK-TSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCVELKKTYDLLFSPK-GN   86 (566)
T ss_pred             ceeEEeccCCccccccccccCC-CCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEeccceeeeeeeccc-cc
Confidence            457788765422 223333321 1122346789999999999999999999988754  333444448899999999 66


Q ss_pred             eEEEEecCCCCCC-----ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc-------cccCceee
Q 013871          105 HVAVFVPESKGSP-----ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-------DKTNQSYY  172 (434)
Q Consensus       105 ~ia~~~~~~~~~~-----~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~-------d~~~~~~~  172 (434)
                      ++..|-+-....+     -.+.+|++.+   +........-....-...|++|....+.+++.++       +++...-.
T Consensus        87 yL~T~e~~~i~~~~~~~~pn~~v~~vet---~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl  163 (566)
T KOG2315|consen   87 YLLTWEPWAIYGPKNASNPNVLVYNVET---GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL  163 (566)
T ss_pred             ccccccccccccCCCCCCCceeeeeecc---ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee
Confidence            6766644322222     3567898866   2222221111111136677777665444332221       00000000


Q ss_pred             ccee--EEEE--------------eeCCcceeeeecCC--C--------------CCeEEEEECcCCCEEEEEEc-cCC-
Q 013871          173 GESK--LNYL--------------TTDGTHEGLVPLRK--E--------------GPVHDVQWSYSGSEFAVVYG-FMP-  218 (434)
Q Consensus       173 g~~~--l~~l--------------~~~~~~~~~v~l~~--~--------------~~i~~v~wspdg~~~av~~g-~~~-  218 (434)
                      ....  .+.+              +..|. ...+.+-+  .              ..--.+.|.+-|.-+.+++. +-| 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGa-Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGA-PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCC-CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecC
Confidence            0000  0011              11111 00110000  0              00013556665554444322 222 


Q ss_pred             --------CeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEeeCCCceEEEE
Q 013871          219 --------ASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW  287 (434)
Q Consensus       219 --------~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~w  287 (434)
                              .++++++++++. ...+ ..++|.++.|||+|+-+++ .|+  +...+.|+|++ ++.+..+....-..+-|
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifnlr-~~~v~df~egpRN~~~f  319 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFNLR-GKPVFDFPEGPRNTAFF  319 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEcCC-CCEeEeCCCCCccceEE
Confidence                    145555555332 3344 4899999999999985555 444  77899999986 56666665555556899


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEcCCCCCCCC
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +|.|++|+.|+-. -|  .|.+-|||+... ++.......-.-+.|.|++.+++.+
T Consensus       320 np~g~ii~lAGFG-NL--~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTA  372 (566)
T KOG2315|consen  320 NPHGNIILLAGFG-NL--PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTA  372 (566)
T ss_pred             CCCCCEEEEeecC-CC--CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEE
Confidence            9999999999872 12  568999999654 4555555566678899999987764

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=8.8e-15  Score=145.04  Aligned_cols=242  Identities=11%  Similarity=0.067  Sum_probs=154.0

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.|||...+.. +.+....   ..+..++|||||+.|++..    +..|.+|++..... .........+..+.|||
T Consensus       178 ~~~l~~~d~dg~~~-~~lt~~~---~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        178 PYELRVSDYDGYNQ-FVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP  252 (429)
T ss_pred             ceeEEEEcCCCCCC-EEeecCC---CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCCCCcCCeEECC
Confidence            45799999765443 3333322   4455899999999998763    24899999876432 11111122356789999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++.....  ....|.+|++.+   + .+.+++........+.|+|||+.|++....    .     +...||.+
T Consensus       253 D-G~~La~~~~~~--g~~~I~~~d~~t---g-~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~----~-----g~~~Iy~~  316 (429)
T PRK03629        253 D-GSKLAFALSKT--GSLNLYVMDLAS---G-QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQ----A-----GRPQVYKV  316 (429)
T ss_pred             C-CCEEEEEEcCC--CCcEEEEEECCC---C-CEEEccCCCCCcCceEECCCCCEEEEEeCC----C-----CCceEEEE
Confidence            9 55555433221  123578888865   3 334444444566789999999998776321    1     23358888


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeCCc-CeeEEEECCCCCeEEEEecCC
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      +..+.....+... .+....+.|||||+.++++.... ...+.+||+.+.....+... ......|||||++|+.++.+.
T Consensus       317 d~~~g~~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~  395 (429)
T PRK03629        317 NINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQG  395 (429)
T ss_pred             ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCC
Confidence            8776544444332 34456799999999998764332 23688899876665555322 234688999999999988655


Q ss_pred             CCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013871          259 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp  289 (434)
                      ..+.+++++++.. ....+..+  .+...+|||
T Consensus       396 ~~~~l~~~~~~G~-~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        396 MGSVLNLVSTDGR-FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             CceEEEEEECCCC-CeEECccCCCCcCCcccCC
Confidence            4456888888544 33333332  455689998

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.71  E-value=1.2e-16  Score=141.56  Aligned_cols=220  Identities=16%  Similarity=0.275  Sum_probs=150.9

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |+...++-+||+||.++|+++ |-.|+|+|++..-...   .+    ..  +-+++             ....       
T Consensus       111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks---~~----~e--m~~~~-------------~qa~-------  161 (430)
T KOG0640|consen  111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS---KP----KE--MISGD-------------TQAR-------  161 (430)
T ss_pred             cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc---ch----hh--hccCC-------------cccC-------
Confidence            447778889999999999996 5599999987532111   00    00  01110             0000       


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                          ...|+++.-|-.++..+.|+|....|   .+...|.+.+       |+.+.-...+.....+....+|.++.|+|.
T Consensus       162 ----hPvIRTlYDH~devn~l~FHPre~IL---iS~srD~tvK-------lFDfsK~saKrA~K~~qd~~~vrsiSfHPs  227 (430)
T KOG0640|consen  162 ----HPVIRTLYDHVDEVNDLDFHPRETIL---ISGSRDNTVK-------LFDFSKTSAKRAFKVFQDTEPVRSISFHPS  227 (430)
T ss_pred             ----CceEeehhhccCcccceeecchhheE---EeccCCCeEE-------EEecccHHHHHHHHHhhccceeeeEeecCC
Confidence                12233334455567788888876643   3344566665       333321111111122333579999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecccceeE------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C
Q 013871          207 GSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A  279 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~~~~------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~  279 (434)
                      |.++++  |.....+++||+.+-+.+      +.|++.++++.||+.|++.++|+   .||.|+|||--+++++.++. +
T Consensus       228 Gefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~IklwDGVS~rCv~t~~~A  302 (430)
T KOG0640|consen  228 GEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLWDGVSNRCVRTIGNA  302 (430)
T ss_pred             CceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec---cCCcEEeeccccHHHHHHHHhh
Confidence            998885  666679999999754433      23789999999999999999998   67899999988888887774 3


Q ss_pred             C---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871          280 E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  321 (434)
Q Consensus       280 ~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~  321 (434)
                      |   .+....|+.+|+||++.+.      |..+++|.+ +|+.+..
T Consensus       303 H~gsevcSa~Ftkn~kyiLsSG~------DS~vkLWEi~t~R~l~~  342 (430)
T KOG0640|consen  303 HGGSEVCSAVFTKNGKYILSSGK------DSTVKLWEISTGRMLKE  342 (430)
T ss_pred             cCCceeeeEEEccCCeEEeecCC------cceeeeeeecCCceEEE
Confidence            3   4555899999999999999      999999998 5665544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.2e-14  Score=144.84  Aligned_cols=244  Identities=14%  Similarity=0.131  Sum_probs=155.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.+||.. |...+.+..+.   ..+..++|||||+.|++..    +..|.+|++..... .........+..+.|||
T Consensus       181 ~~~l~~~d~d-g~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        181 IKRLAIMDQD-GANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP  255 (435)
T ss_pred             ceEEEEECCC-CCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC
Confidence            4589999975 44445554432   4556899999999998874    24899999876432 11111223456789999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++....  .....|.+|++..    ..+..++.+........|+|||+.|++....    .     |...||.+
T Consensus       256 D-G~~la~~~~~--~g~~~Iy~~d~~~----~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~----~-----g~~~Iy~~  319 (435)
T PRK05137        256 D-GRKVVMSLSQ--GGNTDIYTMDLRS----GTTTRLTDSPAIDTSPSYSPDGSQIVFESDR----S-----GSPQLYVM  319 (435)
T ss_pred             C-CCEEEEEEec--CCCceEEEEECCC----CceEEccCCCCccCceeEcCCCCEEEEEECC----C-----CCCeEEEE
Confidence            9 4555443222  2234566777754    2344455455556678999999998875321    1     33468888


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCC
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      +..+.....+... .+.+..+.|||||+.++++..... ..+.++|+.+.....+. ......+.|||||++|+......
T Consensus       320 d~~g~~~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~  398 (435)
T PRK05137        320 NADGSNPRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTP  398 (435)
T ss_pred             ECCCCCeEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence            8777655554432 455677899999999998653222 37888898765554442 33456789999999988866432


Q ss_pred             CC---CeEEEEEccCCEEEEEeeCCCceEEEECCC
Q 013871          259 LP---GDMAFWDYVDGKQLGTTRAECSVTSEWSPD  290 (434)
Q Consensus       259 ~~---g~i~iwd~~~~~~i~~~~~~~~~~~~wspd  290 (434)
                      ..   ..|+++|+..+..........+...+|||-
T Consensus       399 ~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~  433 (435)
T PRK05137        399 GSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL  433 (435)
T ss_pred             CCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence            22   478999987664432222224555889873

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.71  E-value=2e-15  Score=146.64  Aligned_cols=312  Identities=13%  Similarity=0.188  Sum_probs=195.1

Q ss_pred             cceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCCc---------------------EEEEEe----e---cCcCCC
Q 013871            2 LLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETGE---------------------AVYQLF----Q---KNMTKT   50 (434)
Q Consensus         2 V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g~---------------------~~~~~~----~---~~~~~~   50 (434)
                      |++|+|...|.   +|++.+     +|..|+||.+.-+.                     .+..+.    .   ...|.+
T Consensus       194 Irsl~f~~~~~~~~~laS~S-----QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD  268 (764)
T KOG1063|consen  194 IRSLAFARLGGDDLLLASSS-----QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED  268 (764)
T ss_pred             hhhhhhhccCCCcEEEEecC-----CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc
Confidence            56788876655   777777     89999999874222                     111111    0   012446


Q ss_pred             CCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871           51 TWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        51 ~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      -+.++.|+|++. +|....|+++.+|........-...++       ..+..+..|+|+++..|+      .+.-|-.++
T Consensus       269 WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~------~g~~Gg~hl  342 (764)
T KOG1063|consen  269 WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA------HGRTGGFHL  342 (764)
T ss_pred             ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE------ecccCcEEE
Confidence            677899999995 555557889999998764321122222       224677889998644443      244567889


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec--ceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG--ESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g--~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      |...+...=.+....++|-.++..+.|.|.|.+|+..   ..|++.+.++-  .+.-|       ++..-|--|...+.+
T Consensus       343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa~wg~q~~w-------HEiaRPQiHGyDl~c  412 (764)
T KOG1063|consen  343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFARWGRQQEW-------HEIARPQIHGYDLTC  412 (764)
T ss_pred             EeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeecccccccce-------eeeccccccccccee
Confidence            9833211113334566788899999999999987543   36777665531  11100       000001112334455


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecc---------------------------------cce-----------------
Q 013871          201 VQWSYSGSEFAVVYGFMPASATIFNKK---------------------------------CRP-----------------  230 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~~v~l~d~~---------------------------------~~~-----------------  230 (434)
                      +++-+...+|+  +|....-+++|+.-                                 .++                 
T Consensus       413 ~~~vn~~~~FV--SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e  490 (764)
T KOG1063|consen  413 LSFVNEDLQFV--SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE  490 (764)
T ss_pred             eehccCCceee--ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence            55554322333  44444344444210                                 000                 


Q ss_pred             ---------------------------eEEe--CCcCeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEEeeC
Q 013871          231 ---------------------------ILEL--GSGPYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       231 ---------------------------~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~~~~  279 (434)
                                                 ++.+  |...+.+++.||+|+++|++...+.  ...|.+|++.+...+..+..
T Consensus       491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~  570 (764)
T KOG1063|consen  491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG  570 (764)
T ss_pred             cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence                                       0001  3455778999999999999865442  46799999999988888888


Q ss_pred             C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-------ecccceeeEEEcCCCCCCCC
Q 013871          280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-------MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-------~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |  .++.++|||||+||++++-      |+++.+|..........       |..-+|+..|.|+.-+.++.
T Consensus       571 HsLTVT~l~FSpdg~~LLsvsR------DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa  636 (764)
T KOG1063|consen  571 HSLTVTRLAFSPDGRYLLSVSR------DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA  636 (764)
T ss_pred             cceEEEEEEECCCCcEEEEeec------CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence            8  5566999999999999999      99999999854433222       33358999999999886665

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.70  E-value=1e-15  Score=136.34  Aligned_cols=259  Identities=15%  Similarity=0.169  Sum_probs=183.5

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCcee--------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGIL--------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      .-+.|.+|||||+||+++ .||-|.||+..+......        .-...+.|.++.||-+ ..++|     ++..++.|
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMlA-----sGsqDGkI  287 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEMLA-----SGSQDGKI  287 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHhh-----ccCcCCcE
Confidence            344588999999999998 588999999765322111        1123346888888887 34444     57788999


Q ss_pred             EEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCe
Q 013871          121 QIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPV  198 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i  198 (434)
                      ++|.+.+   +++++... .|...++++.|+.|+..++.   ...|.+.+       ++-+.  .+ .+...+ .+...|
T Consensus       288 KvWri~t---G~ClRrFdrAHtkGvt~l~FSrD~SqiLS---~sfD~tvR-------iHGlK--SG-K~LKEfrGHsSyv  351 (508)
T KOG0275|consen  288 KVWRIET---GQCLRRFDRAHTKGVTCLSFSRDNSQILS---ASFDQTVR-------IHGLK--SG-KCLKEFRGHSSYV  351 (508)
T ss_pred             EEEEEec---chHHHHhhhhhccCeeEEEEccCcchhhc---ccccceEE-------Eeccc--cc-hhHHHhcCccccc
Confidence            9999998   88887665 67788999999999998754   23454443       33221  11 111111 236788


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCE
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~----~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +.+.|++||.+++  +.+.|+++++|+.+ ++.+.+|    ..-++|++..-|.. ..++++...|   +|+|.++. |.
T Consensus       352 n~a~ft~dG~~ii--saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~q-GQ  425 (508)
T KOG0275|consen  352 NEATFTDDGHHII--SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQ-GQ  425 (508)
T ss_pred             cceEEcCCCCeEE--EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEecc-ce
Confidence            9999999999988  67789999999996 3444444    35678888877755 4777777665   89999875 55


Q ss_pred             EEEEeeC-----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcCCCCCCCC
Q 013871          273 QLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       273 ~i~~~~~-----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~~~~~~~~  342 (434)
                      .+..+..     .+.+.+..||.|+++...+.      |+.++.|.+ +|++-...+.  ..+..+.-+|....+.+.
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigE------D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGE------DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEcc------CcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence            6665543     36677999999999999999      999999998 5666554443  346667777776555443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.70  E-value=5.3e-15  Score=137.46  Aligned_cols=247  Identities=13%  Similarity=0.219  Sum_probs=165.8

Q ss_pred             CCCCCeeeecCCCcEE-EEec-CCeEEEEeCCCCCCce----------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871           49 KTTWPSIRFSSDEAVA-CRMA-TNEIQFFDTTDFPKGI----------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~l-a~~~-~~~i~v~~~~~~~~~~----------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ...+..+++-|....| |+.. .+.|.|||........          ....|...=.+++|++....+++     +.+.
T Consensus       124 ~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll-----s~~~  198 (422)
T KOG0264|consen  124 DGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL-----SGSD  198 (422)
T ss_pred             CccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe-----eccC
Confidence            3667678888866544 4443 4699999975432111          22333332456888887554554     4577


Q ss_pred             CceEEEEEcCCCCC----CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cceeeee
Q 013871          117 PASVQIYACGKDLQ----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVP  191 (434)
Q Consensus       117 ~~~v~i~~~~~~~~----~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~  191 (434)
                      ++.|++|++.....    ..+......|...+..++|++....++..+..  |       +  .|.+.++.. .......
T Consensus       199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~d--d-------~--~L~iwD~R~~~~~~~~~  267 (422)
T KOG0264|consen  199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGD--D-------G--KLMIWDTRSNTSKPSHS  267 (422)
T ss_pred             CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecC--C-------C--eEEEEEcCCCCCCCccc
Confidence            88999999976432    22334455566777788999988877554322  2       1  234444432 1122222


Q ss_pred             -cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEE
Q 013871          192 -LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAF  265 (434)
Q Consensus       192 -l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~i  265 (434)
                       -.+.++|++++|+|-+..+ +++|+.|++|.|||+|  +.+++.+  |...|.++.|||+-. .|+++|   .++.+.|
T Consensus       268 ~~ah~~~vn~~~fnp~~~~i-lAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~v  343 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFI-LATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNV  343 (422)
T ss_pred             ccccCCceeEEEeCCCCCce-EEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEE
Confidence             2358999999999966433 3389999999999997  4567766  789999999999876 666666   5679999


Q ss_pred             EEccCC--------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871          266 WDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       266 wd~~~~--------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~  320 (434)
                      ||+..-              +++....+|  .+..+.|+|....+++....     ||.+.||.+...+..
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae-----DN~LqIW~~s~~i~~  409 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE-----DNILQIWQMAENIYN  409 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC-----CceEEEeeccccccC
Confidence            998732              344555666  56669999998886665554     999999998765543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=1.4e-13  Score=132.12  Aligned_cols=263  Identities=10%  Similarity=0.075  Sum_probs=159.5

Q ss_pred             CCCcEEEEEcCC-Cc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeeec-CCeeEE
Q 013871           24 QEKNVILWKTET-GE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLRV-PGVAAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~-g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~~-~~v~~~   96 (434)
                      .++.|.+|++.+ |+  .+..+...    .....++++||+++|+.+  .++.|.+|++...... ....... .....+
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~~~----~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i   85 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVDVP----GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI   85 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEecC----CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence            578999999964 43  44454332    233368999999988765  3579999998632221 1122222 245678


Q ss_pred             EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013871           97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES  175 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~  175 (434)
                      .++|++...++. .    ...+.|.+|++.... ....+.... .......+.++|+|+++++...           +..
T Consensus        86 ~~~~~g~~l~v~-~----~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~-----------~~~  148 (330)
T PRK11028         86 STDHQGRFLFSA-S----YNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCL-----------KED  148 (330)
T ss_pred             EECCCCCEEEEE-E----cCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeC-----------CCC
Confidence            999985433322 1    124689999986421 011222111 1123456788999998865321           112


Q ss_pred             eEEEEeeCCcce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---eEEeCC------c-
Q 013871          176 KLNYLTTDGTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILELGS------G-  237 (434)
Q Consensus       176 ~l~~l~~~~~~~------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---~~~~~~------~-  237 (434)
                      .+..+++.....      ..+.+......+.++|+|||++++++ ...++.|.+||++.  ..   +..+..      + 
T Consensus       149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~  227 (330)
T PRK11028        149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT  227 (330)
T ss_pred             EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence            234444332111      11122223445789999999999875 44467999999852  12   222211      1 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                       ....+.++|+|++|+++..+  .+.|.+|+++..    +.+..... .....+.++|||++|+++...     +++|.|
T Consensus       228 ~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~-----~~~v~v  300 (330)
T PRK11028        228 RWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK-----SHHISV  300 (330)
T ss_pred             ccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc-----CCcEEE
Confidence             12358899999999988532  469999998643    23333322 245569999999999998754     899999


Q ss_pred             Eeec
Q 013871          312 FHHN  315 (434)
Q Consensus       312 w~~~  315 (434)
                      |+++
T Consensus       301 ~~~~  304 (330)
T PRK11028        301 YEID  304 (330)
T ss_pred             EEEc
Confidence            9985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=5.7e-15  Score=146.63  Aligned_cols=249  Identities=14%  Similarity=0.145  Sum_probs=150.7

Q ss_pred             CcEEEEEe-cCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCcee
Q 013871           11 GLIIQTFQ-KSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGIL   85 (434)
Q Consensus        11 g~~L~t~~-~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~   85 (434)
                      ++.++... +..+..+..|.|||...+. .+.+....   ..+..++|||||+.|++...    .+|.+||+........
T Consensus       168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~-~~~lt~~~---~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l  243 (429)
T PRK01742        168 RTRIAYVVQKNGGSQPYEVRVADYDGFN-QFIVNRSS---QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV  243 (429)
T ss_pred             CCEEEEEEEEcCCCceEEEEEECCCCCC-ceEeccCC---CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence            34554433 2222345789999975443 44444332   45568999999999998742    3799999876432111


Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      ... ......+.|||+ +..|++..... + ...|.+|++..    ..+...+.+......+.|+|||+.|++....  +
T Consensus       244 ~~~-~g~~~~~~wSPD-G~~La~~~~~~-g-~~~Iy~~d~~~----~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~  313 (429)
T PRK01742        244 ASF-RGHNGAPAFSPD-GSRLAFASSKD-G-VLNIYVMGANG----GTPSQLTSGAGNNTEPSWSPDGQSILFTSDR--S  313 (429)
T ss_pred             ecC-CCccCceeECCC-CCEEEEEEecC-C-cEEEEEEECCC----CCeEeeccCCCCcCCEEECCCCCEEEEEECC--C
Confidence            111 123456899999 45555433211 1 12344445543    3345555556667789999999998775321  1


Q ss_pred             ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEE
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRW  244 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~  244 (434)
                             |...||.++..+.....+  ...+  ...+|+|||+.+++..+  + .+.+||+.......+ .......+.|
T Consensus       314 -------g~~~I~~~~~~~~~~~~l--~~~~--~~~~~SpDG~~ia~~~~--~-~i~~~Dl~~g~~~~lt~~~~~~~~~~  379 (429)
T PRK01742        314 -------GSPQVYRMSASGGGASLV--GGRG--YSAQISADGKTLVMING--D-NVVKQDLTSGSTEVLSSTFLDESPSI  379 (429)
T ss_pred             -------CCceEEEEECCCCCeEEe--cCCC--CCccCCCCCCEEEEEcC--C-CEEEEECCCCCeEEecCCCCCCCceE
Confidence                   233577777665533333  2233  56889999999987543  3 566789865443333 2223456889


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEc--cCCEEEEEeeCC--CceEEEECCC
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~~~~~~--~~~~~~wspd  290 (434)
                      +|||++|+.++.+   |.+.+|++  .+++.+..+.++  .+..++|||-
T Consensus       380 sPdG~~i~~~s~~---g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        380 SPNGIMIIYSSTQ---GLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCEEEEEEcC---CCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence            9999999998843   45666654  246666666544  3456899984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2e-15  Score=129.79  Aligned_cols=233  Identities=13%  Similarity=0.151  Sum_probs=157.0

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDT   77 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~   77 (434)
                      .+...--|+.|+|++     .|+.|+|+.+.+.   ..+.++.+++   ..+-.+.|..  -|.+||++ .|+.|.||+-
T Consensus        16 da~lDyygkrlATcs-----SD~tVkIf~v~~n~~s~ll~~L~Gh~---GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen   16 DAQLDYYGKRLATCS-----SDGTVKIFEVRNNGQSKLLAELTGHS---GPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             Hhhhhhhcceeeeec-----CCccEEEEEEcCCCCceeeeEecCCC---CCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            334444699999999     8999999999654   3456666654   4444899987  89999998 5889999997


Q ss_pred             CCC--CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           78 TDF--PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        78 ~~~--~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .+.  .+......|...|++++|.|..- .++++-     ..++.|.|.++...                        |-
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca-----sSDG~vsvl~~~~~------------------------g~  138 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA-----SSDGKVSVLTYDSS------------------------GG  138 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEe-----eCCCcEEEEEEcCC------------------------CC
Confidence            664  23334455666788888888742 233332     22344555544331                        00


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC---C-----------CEEEEEEccCCCe
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS---G-----------SEFAVVYGFMPAS  220 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd---g-----------~~~av~~g~~~~~  220 (434)
                                                    -....+...++-.|++++|.|.   |           ++|+  +|.+|..
T Consensus       139 ------------------------------w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlv--SgGcDn~  186 (299)
T KOG1332|consen  139 ------------------------------WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLV--SGGCDNL  186 (299)
T ss_pred             ------------------------------ccchhhhhccccccceeeecCcCCCccccccCcccccceee--ccCCccc
Confidence                                          0011112223456777777775   4           4566  7999999


Q ss_pred             EEEEecccc-----eeEEeCCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCceEE
Q 013871          221 ATIFNKKCR-----PILELGSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSVTS  285 (434)
Q Consensus       221 v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~~~~  285 (434)
                      |+||+....     ....-|.+-+..++|.|.-    .+|++++   .||++.||-.+..      +++..+.. .+..+
T Consensus       187 VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~~-~~w~v  262 (299)
T KOG1332|consen  187 VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS---QDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRV  262 (299)
T ss_pred             eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec---CCCcEEEEEecCccCcccccccccCCc-ceEEE
Confidence            999987542     2223388899999999965    3778887   7889999976521      12222211 34569


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .||+.|..|+++..      ||.|.+|.-+
T Consensus       263 SWS~sGn~LaVs~G------dNkvtlwke~  286 (299)
T KOG1332|consen  263 SWSLSGNILAVSGG------DNKVTLWKEN  286 (299)
T ss_pred             EEeccccEEEEecC------CcEEEEEEeC
Confidence            99999999999999      9999999754

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.69  E-value=7.4e-15  Score=137.64  Aligned_cols=281  Identities=10%  Similarity=0.104  Sum_probs=184.9

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp  100 (434)
                      ...++|||+..-+....|.+.... -.+..+.|+....+++..  .+..+++|.-....  .....+...+.-.+++...
T Consensus        11 gd~~kl~D~s~~~~~~~~~~~t~~-pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s   89 (673)
T KOG4378|consen   11 GDKTKLSDFSDLETKSEYVHQTAE-PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS   89 (673)
T ss_pred             CCceEEeecccccCccccccCCCC-CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence            467999999766554444443221 235588999877543333  34578888755431  1111122222211221111


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      . ..+++     ++|..+.|+||++..   ...++....|+..+..+.+|-...+|+....          .|+.-|+-+
T Consensus        90 ~-S~y~~-----sgG~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~----------gGdiiih~~  150 (673)
T KOG4378|consen   90 Q-SLYEI-----SGGQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVSD----------GGDIIIHGT  150 (673)
T ss_pred             c-ceeee-----ccCcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEecc----------CCcEEEEec
Confidence            1 11111     467888999999976   5666667778888889999988888765421          133333333


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECCCCC-eEEEEe
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAG  255 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~-~l~~~~  255 (434)
                      ... .....+..+....|.-+.|||..+.+.++. ..+|.|++||..+. +++.+   |..|...|+|||... +|++.|
T Consensus       151 ~t~-~~tt~f~~~sgqsvRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG  228 (673)
T KOG4378|consen  151 KTK-QKTTTFTIDSGQSVRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG  228 (673)
T ss_pred             ccC-ccccceecCCCCeEEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec
Confidence            221 112223333345667899999888888764 45899999999754 45544   889999999999765 667778


Q ss_pred             cCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--eeecccceee
Q 013871          256 FGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--KKMFDKLFQA  330 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~--~~--~~~~~~~~~~  330 (434)
                         +|..|++||....+....+.. +..+.++|+++|.+|+.|+.      .|.|..||+.+..  +.  ..+...+..+
T Consensus       229 ---~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~v  299 (673)
T KOG4378|consen  229 ---YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRV  299 (673)
T ss_pred             ---ccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEE
Confidence               455999999998776666554 45566999999999999999      9999999997762  22  2344569999


Q ss_pred             EEEcCC
Q 013871          331 EWKPVS  336 (434)
Q Consensus       331 ~w~p~~  336 (434)
                      +|+|-+
T Consensus       300 afq~s~  305 (673)
T KOG4378|consen  300 AFQPSP  305 (673)
T ss_pred             Eeeecc
Confidence            999987

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.69  E-value=1.5e-15  Score=137.90  Aligned_cols=226  Identities=20%  Similarity=0.318  Sum_probs=150.4

Q ss_pred             CeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCCC-------------CCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           92 GVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        92 ~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~~-------------~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .+..+..++-++. +.++|.     ..|.|.||++...             +..+++.+...|+..-..+.|||--...+
T Consensus       153 ~~NRvr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  153 GINRVRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             ccceeeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4555555665433 444443     3468999997531             23677888888998899999999433211


Q ss_pred             EEEEecccccCceeecceeEEEEeeC-Ccc-eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce----
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTD-GTH-EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----  230 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~-~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----  230 (434)
                      .  +  .|....       +|+.... |.- ....+ ..++..|.+++|||..+-++. +++-|+.|+|||++..+    
T Consensus       228 l--s--GDc~~~-------I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  228 L--S--GDCVKG-------IHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-SCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             c--c--Cccccc-------eEeeeeccCceeecCccccccccchhhhccCCccCceEE-eeecCceEEEEEecCCCccce
Confidence            1  1  222222       2222111 110 01111 235788999999998765444 57779999999998552    


Q ss_pred             -eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871          231 -ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 -~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~  304 (434)
                       ...-|.+.||-|.|+-+-.+||+|+   .+|++.|||+++.   +.+..+..|  .+++++|+|....++.++..    
T Consensus       296 ~~~kAh~sDVNVISWnr~~~lLasG~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~----  368 (440)
T KOG0302|consen  296 VSTKAHNSDVNVISWNRREPLLASGG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE----  368 (440)
T ss_pred             eEeeccCCceeeEEccCCcceeeecC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC----
Confidence             2344888999999999988888887   6699999998854   567777766  67789999976655544443    


Q ss_pred             eCCcEEEEeecC--------------------ceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871          305 IDNGIKIFHHNG--------------------SLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       305 ~D~~i~iw~~~g--------------------~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                       |+.|.|||+.=                    ++++...- .++.++.|+++-|.++-.
T Consensus       369 -D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs  426 (440)
T KOG0302|consen  369 -DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS  426 (440)
T ss_pred             -CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence             99999999821                    13333322 478899999998887654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.69  E-value=1.4e-16  Score=143.05  Aligned_cols=237  Identities=12%  Similarity=0.203  Sum_probs=168.0

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      +.++...+.+..++-|+++  |+..++++ -|++|.|||.++.........|...|-++.+.-   . +.+    ++..+
T Consensus       187 ~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---r-vii----sGSSD  256 (499)
T KOG0281|consen  187 LQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---R-VIV----SGSSD  256 (499)
T ss_pred             eeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---e-EEE----ecCCC
Confidence            4445444434456668888  44455555 689999999998776666667777777776642   2 222    45677


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCC
Q 013871          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG  196 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~  196 (434)
                      ++|++|++.+   +.++.+.-.|...+..+.++..  +   +.+...|.+...       |.+...... -..+...+..
T Consensus       257 sTvrvWDv~t---ge~l~tlihHceaVLhlrf~ng--~---mvtcSkDrsiaV-------Wdm~sps~it~rrVLvGHrA  321 (499)
T KOG0281|consen  257 STVRVWDVNT---GEPLNTLIHHCEAVLHLRFSNG--Y---MVTCSKDRSIAV-------WDMASPTDITLRRVLVGHRA  321 (499)
T ss_pred             ceEEEEeccC---CchhhHHhhhcceeEEEEEeCC--E---EEEecCCceeEE-------EeccCchHHHHHHHHhhhhh
Confidence            8999999998   8888888777778888888752  3   223336666664       444332221 1233445678


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .|+.++|+  .++++  +.+.|.++++|++. ++.+..+  |...+-|+.|  .|+++++|+.|+   +|++||++.|++
T Consensus       322 aVNvVdfd--~kyIV--sASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~c  392 (499)
T KOG0281|consen  322 AVNVVDFD--DKYIV--SASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC  392 (499)
T ss_pred             heeeeccc--cceEE--EecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCc---eEEEEeccccHH
Confidence            89999996  44555  56678899999996 5556666  5667777777  489999999666   999999999999


Q ss_pred             EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       274 i~~~~~~~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +..+++|.-  -++.|  |.+.|++|..      ||+|+|||+...
T Consensus       393 LRvLeGHEeLvRciRF--d~krIVSGaY------DGkikvWdl~aa  430 (499)
T KOG0281|consen  393 LRVLEGHEELVRCIRF--DNKRIVSGAY------DGKIKVWDLQAA  430 (499)
T ss_pred             HHHHhchHHhhhheee--cCceeeeccc------cceEEEEecccc
Confidence            999999843  33666  6688999999      999999999543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=2.6e-14  Score=142.14  Aligned_cols=242  Identities=13%  Similarity=0.115  Sum_probs=153.5

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeecCCeeEEEEeC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRVPGVAAFEVSK  100 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp  100 (434)
                      ..+|.|||.. |...+.+....   ..+..++|||||+.+++...    ..|.+|++..... ............+.|||
T Consensus       183 ~~~l~i~D~~-g~~~~~lt~~~---~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        183 RYALQVADSD-GYNPQTILRSA---EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASFRGINGAPSFSP  257 (433)
T ss_pred             eEEEEEECCC-CCCceEeecCC---CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccCCCCccCceECC
Confidence            4579999975 44444444332   44558999999999998742    3799999876432 11111112244689999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++....  .....|.+|++.+   +. +..++.+......+.|+|||+.|++...    ..     |...||.+
T Consensus       258 D-G~~l~~~~s~--~g~~~Iy~~d~~~---g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd----~~-----g~~~iy~~  321 (433)
T PRK04922        258 D-GRRLALTLSR--DGNPEIYVMDLGS---RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSD----RG-----GRPQIYRV  321 (433)
T ss_pred             C-CCEEEEEEeC--CCCceEEEEECCC---CC-eEECccCCCCccceEECCCCCEEEEEEC----CC-----CCceEEEE
Confidence            9 4555443222  1235788888865   33 3444444444567899999999877532    11     23358888


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeCC-cCeeEEEECCCCCeEEEEecCC
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~~-~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      +..+.....+... ......++|||||+.+++...... ..|.+||+.+.....+.. .......|||||++|+......
T Consensus       322 dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~  400 (433)
T PRK04922        322 AASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREG  400 (433)
T ss_pred             ECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecC
Confidence            8766544444432 234557899999999998654321 268999987655555532 2345679999999988877544


Q ss_pred             CCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871          259 LPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ..+.|+++|+..+. ...+..  ..+...+|||
T Consensus       401 g~~~L~~~~~~g~~-~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        401 GRGVLAAVSTDGRV-RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             CceEEEEEECCCCc-eEEcccCCCCCCCCccCC
Confidence            45679999986543 333322  2455688987

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.68  E-value=9.2e-14  Score=137.37  Aligned_cols=264  Identities=9%  Similarity=0.011  Sum_probs=156.4

Q ss_pred             CcEEEEEecCCC-CC---CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEec--C--CeEEEEeCCCC
Q 013871           11 GLIIQTFQKSST-PQ---EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRMA--T--NEIQFFDTTDF   80 (434)
Q Consensus        11 g~~L~t~~~~~~-~~---d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~~--~--~~i~v~~~~~~   80 (434)
                      +++++....... ..   ...|.+.|...+. .+.+....   .....++|||||+.  ++..+  +  .+|.+.++...
T Consensus       146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~-~~~lt~~~---~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g  221 (428)
T PRK01029        146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQN-LRPLTQEH---SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP  221 (428)
T ss_pred             cCEEEEEEeeCCcccccccceEEEEcCCCCC-ceEcccCC---CCcccceEccCCCceEEEEEEccCCCceEEEEECCCC
Confidence            666665543221 11   3478888866554 34444332   23347899999975  32232  2  37888888764


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-ccceeEEEECCCCCeEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~  159 (434)
                      ....... .........|||| +..|++.....+.....+.+|++.... .....+.+.. ........|+|||+.|++.
T Consensus       222 ~~~~lt~-~~g~~~~p~wSPD-G~~Laf~s~~~g~~di~~~~~~~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~  298 (428)
T PRK01029        222 AGKKILA-LQGNQLMPTFSPR-KKLLAFISDRYGNPDLFIQSFSLETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFV  298 (428)
T ss_pred             CceEeec-CCCCccceEECCC-CCEEEEEECCCCCcceeEEEeecccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEE
Confidence            4311111 1223456899999 556665543333333344556665421 1122223222 2234578999999998876


Q ss_pred             EEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeC-
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~-  235 (434)
                      ...    .     |...||.+++.+.  ....++ ...+.+....|||||+.++++.... ...|.+||+.+.....+. 
T Consensus       299 s~~----~-----g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~  368 (428)
T PRK01029        299 SNK----D-----GRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT  368 (428)
T ss_pred             ECC----C-----CCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence            422    1     2335777766432  122222 2235677899999999999764332 237999999876666553 


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013871          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                       ...+....|+|||++|+.....+..+.|+++|+.+++........ .....+|||-.
T Consensus       369 ~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        369 SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence             235567999999999887665444578999999887654444333 34568999854

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.68  E-value=1.1e-14  Score=132.57  Aligned_cols=262  Identities=14%  Similarity=0.190  Sum_probs=173.9

Q ss_pred             CcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeee
Q 013871           61 EAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRS  138 (434)
Q Consensus        61 ~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~  138 (434)
                      ++++.++ .||.+++|+...... .....|...|.+++|--.+.. -+.|+  +.+.+.++++|....... ...+....
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~-~~~~Ght~~ik~v~~v~~n~~-~~~fv--sas~Dqtl~Lw~~~~~~~~~~~~~~~~  190 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSI-KTIVGHTGPIKSVAWVIKNSS-SCLFV--SASMDQTLRLWKWNVGENKVKALKVCR  190 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceE-EEEecCCcceeeeEEEecCCc-cceEE--EecCCceEEEEEecCchhhhhHHhHhc
Confidence            6777776 689999999876332 344556667777666543221 11222  235677888888765321 22333444


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecc----eeEEEEee-----------CCcceeeeecC-CCCCeEEEE
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE----SKLNYLTT-----------DGTHEGLVPLR-KEGPVHDVQ  202 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~----~~l~~l~~-----------~~~~~~~v~l~-~~~~i~~v~  202 (434)
                      +|+..+-++.-+++|+.++   +...|.+.+.|.-+    ..+.-...           .+.....+.+. +.++|.++.
T Consensus       191 GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~  267 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV  267 (423)
T ss_pred             ccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence            8999999999999999853   34467776666411    11111111           11222333443 578999999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEeccccee-EE-eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEe
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKKCRPI-LE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTT  277 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~-~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~  277 (434)
                      |++.+ .++  +++.|.+|+.||+..... .. ......+++.++|..++|++|+.+   ..|++||.+++   -....+
T Consensus       268 w~d~~-v~y--S~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd---r~irl~DPR~~~gs~v~~s~  341 (423)
T KOG0313|consen  268 WSDAT-VIY--SVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD---RHIRLWDPRTGDGSVVSQSL  341 (423)
T ss_pred             EcCCC-ceE--eecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC---CceeecCCCCCCCceeEEee
Confidence            99833 333  578899999999974433 33 367889999999999999999844   59999998865   234556


Q ss_pred             eCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecCc--eeeee--ecccceeeEEEcCCCCCCCC
Q 013871          278 RAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGS--LFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ~~~--~~~~~~wspdg~~l~-tas~~prl~~D~~i~iw~~~g~--~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+|  .+..+.|+|...+++ +++.      ||++++||+...  .+|..  +.+.++.+.|.-. ..+.+.
T Consensus       342 ~gH~nwVssvkwsp~~~~~~~S~S~------D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSG  406 (423)
T KOG0313|consen  342 IGHKNWVSSVKWSPTNEFQLVSGSY------DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSG  406 (423)
T ss_pred             ecchhhhhheecCCCCceEEEEEec------CCeEEEEEeccCCCcceeeccCCceEEEEeccCC-ceEEec
Confidence            666  556699999988755 5555      999999999443  56665  5578999999864 344444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=9.3e-14  Score=130.65  Aligned_cols=264  Identities=16%  Similarity=0.214  Sum_probs=168.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.|+.|.++|..+ |..     .+++|.||+..+.+..++...+   ..++-++.--.||.+|..+.|..|..|| .+..
T Consensus       249 Vl~v~F~engdvi-TgD-----S~G~i~Iw~~~~~~~~k~~~aH---~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~  318 (626)
T KOG2106|consen  249 VLCVTFLENGDVI-TGD-----SGGNILIWSKGTNRISKQVHAH---DGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYR  318 (626)
T ss_pred             EEEEEEcCCCCEE-eec-----CCceEEEEeCCCceEEeEeeec---CCceEEEEEecCccEeecCccceEEecc-cccc
Confidence            7899999999876 544     6899999998666655555443   3666688888999999844567999999 3433


Q ss_pred             Cceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           82 KGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      +.....+.  ...|+.+  .++... +.+-.  +   .+.|--=.+.+    .-......|..+-..+.-.|+...++.+
T Consensus       319 k~r~~elPe~~G~iRtv--~e~~~d-i~vGT--t---rN~iL~Gt~~~----~f~~~v~gh~delwgla~hps~~q~~T~  386 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTV--AEGKGD-ILVGT--T---RNFILQGTLEN----GFTLTVQGHGDELWGLATHPSKNQLLTC  386 (626)
T ss_pred             ccccccCchhcCCeeEE--ecCCCc-EEEee--c---cceEEEeeecC----CceEEEEecccceeeEEcCCChhheeec
Confidence            32222222  1234433  233222 11100  0   00111111111    1111122334444556667766654432


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC--Cc
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--SG  237 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~--~~  237 (434)
                         ..|+....|..            +........+.++.++.|+|.| .+|  .|...+...++|.+...+.+++  ..
T Consensus       387 ---gqdk~v~lW~~------------~k~~wt~~~~d~~~~~~fhpsg-~va--~Gt~~G~w~V~d~e~~~lv~~~~d~~  448 (626)
T KOG2106|consen  387 ---GQDKHVRLWND------------HKLEWTKIIEDPAECADFHPSG-VVA--VGTATGRWFVLDTETQDLVTIHTDNE  448 (626)
T ss_pred             ---cCcceEEEccC------------CceeEEEEecCceeEeeccCcc-eEE--EeeccceEEEEecccceeEEEEecCC
Confidence               23444443321            1111111126799999999999 666  4888889999999887766664  78


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      +++.++|||+|.+||+|+.++   .|+||-+...    ..+....+..++.+.||+|++||.+-+.      |-.|..|.
T Consensus       449 ~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~------d~eiLyW~  519 (626)
T KOG2106|consen  449 QLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG------DYEILYWK  519 (626)
T ss_pred             ceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC------ceEEEEEc
Confidence            899999999999999999554   9999987643    3444555556777999999999999998      99999994


Q ss_pred             e
Q 013871          314 H  314 (434)
Q Consensus       314 ~  314 (434)
                      -
T Consensus       520 ~  520 (626)
T KOG2106|consen  520 P  520 (626)
T ss_pred             c
Confidence            3

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.68  E-value=1.2e-14  Score=135.11  Aligned_cols=281  Identities=15%  Similarity=0.196  Sum_probs=192.9

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCC--CcEEEEecCCeEEE
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSD--EAVACRMATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~~~~i~v   74 (434)
                      |++++|.|..+ -|+..+    +.-++|-+||+.+.+    .+.-|..   |...|.++.|+|.  .+++.+..||+|+.
T Consensus       189 it~l~fHPt~~~~lva~G----dK~G~VG~Wn~~~~~~d~d~v~~f~~---hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  189 ITSLAFHPTENRKLVAVG----DKGGQVGLWNFGTQEKDKDGVYLFTP---HSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEEEEecccCcceEEEEc----cCCCcEEEEecCCCCCccCceEEecc---CCccccceEecCCChhheeeeccCceeee
Confidence            78999999876 555444    256899999995322    2344444   3377889999994  46777778999999


Q ss_pred             EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      -|.+......+..+.  ...+.++.++......+.      .+.-+...+|++...  +.....+..|+..++.+..||.
T Consensus       262 ~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~------~~~~G~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~  333 (498)
T KOG4328|consen  262 QDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF------GDNVGNFNVIDLRTD--GSEYENLRLHKKKITSVALNPV  333 (498)
T ss_pred             eeecchhhHHHhhcCccceeeeeccccCCCccEEE------eecccceEEEEeecC--CccchhhhhhhcccceeecCCC
Confidence            998764332333342  224556666666333322      123347788998764  5667777788889999999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--  228 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--  228 (434)
                      -.++++.+  ..|.+.+       ||.+.-.+....  .-.+++.-.|+++.|||+|-.++  +.+.|..|+|||..+  
T Consensus       334 ~p~~laT~--s~D~T~k-------IWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~--TT~~D~~IRv~dss~~s  402 (498)
T KOG4328|consen  334 CPWFLATA--SLDQTAK-------IWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL--TTCQDNEIRVFDSSCIS  402 (498)
T ss_pred             Cchheeec--ccCccee-------eeehhhhcCCCCcceecccccceeeeeEEcCCCCceE--eeccCCceEEeeccccc
Confidence            88875543  4566665       444443343332  44567788999999999988855  567789999999852  


Q ss_pred             ---ceeEEe-CCc---C---eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc---eE-EEECCCCCEE
Q 013871          229 ---RPILEL-GSG---P---YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS---VT-SEWSPDGRYF  294 (434)
Q Consensus       229 ---~~~~~~-~~~---~---~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~---~~-~~wspdg~~l  294 (434)
                         .+...+ |..   .   .-...|.|+..+|++|.   ....|.|+|-+.++.+..+..+..   .. .+|+|-+..+
T Consensus       403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~  479 (498)
T KOG4328|consen  403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL  479 (498)
T ss_pred             ccCCccceeeccCcccccccchhheeCCCccEEEEec---cCcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence               222222 211   1   12478999999999988   445899999999998888766533   22 8999999988


Q ss_pred             EEEEcCCceeeCCcEEEEeecC
Q 013871          295 MTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ++|+.+     .+.|.||.-.+
T Consensus       480 ~aG~~s-----~Gki~vft~k~  496 (498)
T KOG4328|consen  480 AAGGNS-----SGKIYVFTNKK  496 (498)
T ss_pred             eccCCc-----cceEEEEecCC
Confidence            888875     77788776543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=5.6e-16  Score=158.30  Aligned_cols=283  Identities=16%  Similarity=0.265  Sum_probs=193.3

Q ss_pred             eEEecCCCc-EEEEEecC---CC--CCCCcEEEEEcC--CCc----EEEEEeecCcCCCCCCeeeecCCCcE----EEEe
Q 013871            4 LLTCLRVGL-IIQTFQKS---ST--PQEKNVILWKTE--TGE----AVYQLFQKNMTKTTWPSIRFSSDEAV----ACRM   67 (434)
Q Consensus         4 ~l~fSP~g~-~L~t~~~~---~~--~~d~~v~iWd~~--~g~----~~~~~~~~~~~~~~~~~~~~S~d~~~----la~~   67 (434)
                      .++|||++. +|+++...   ..  ..+.++-||.+.  +.+    .+.++..    ...+..++|++.+..    +|.+
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s----~~rF~kL~W~~~g~~~~GlIaGG   86 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS----SNRFNKLAWGSYGSHSHGLIAGG   86 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccc----cccceeeeecccCCCccceeecc
Confidence            468999997 66654421   11  235667777653  332    2333322    256678999987665    6666


Q ss_pred             -cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eee
Q 013871           68 -ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSF  139 (434)
Q Consensus        68 -~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~  139 (434)
                       .||.|.+|+.....      .......|...|..+.|.+..++.+|     +++..+.|.|||+.+.  ..+..- ...
T Consensus        87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLA-----SGa~~geI~iWDlnn~--~tP~~~~~~~  159 (1049)
T KOG0307|consen   87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLA-----SGADDGEILIWDLNKP--ETPFTPGSQA  159 (1049)
T ss_pred             ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceee-----ccCCCCcEEEeccCCc--CCCCCCCCCC
Confidence             57899999986531      11223445667999999999777887     5778899999999874  232222 222


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC---CCCeEEEEECcCCC-EEEEEEc
Q 013871          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGS-EFAVVYG  215 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~---~~~i~~v~wspdg~-~~av~~g  215 (434)
                      ...++..++||..-.+|+..++..         |...+|.+.  .. ...+.+..   ...++.++|+|+.. ++++.++
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~s---------g~~~iWDlr--~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~  227 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSPS---------GRAVIWDLR--KK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASG  227 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCCC---------CCceecccc--CC-CcccccccCCCccceeeeeeCCCCceeeeeecC
Confidence            556888999999988886543221         333455553  22 34444443   24488999999875 5555444


Q ss_pred             cCCC--eEEEEecc--ccee--EEeCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013871          216 FMPA--SATIFNKK--CRPI--LELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  286 (434)
Q Consensus       216 ~~~~--~v~l~d~~--~~~~--~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~  286 (434)
                      + |+  .|.+||+|  ..++  .+.|...+.++.|++.+ ++|+++|   .|+.|.+|+.++++.+..+...  +...+.
T Consensus       228 d-d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~  303 (1049)
T KOG0307|consen  228 D-DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRIICWNPNTGEVLGELPAQGNWCFDVQ  303 (1049)
T ss_pred             C-CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---CCCCeeEecCCCceEeeecCCCCcceeeee
Confidence            3 43  89999987  3333  34588999999999988 7888888   4559999999999999998764  556699


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      |+|..-.++++.+.     ||.|-|+.+.|..
T Consensus       304 w~pr~P~~~A~asf-----dgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASF-----DGKISIYSLQGTD  330 (1049)
T ss_pred             ecCCCcchhhhhee-----ccceeeeeeecCC
Confidence            99998855555443     9999999997764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=4.1e-14  Score=140.39  Aligned_cols=241  Identities=15%  Similarity=0.160  Sum_probs=151.4

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .........+.++.|||+ +..+++...+  .....|.+|++..   ++. .....+........|+
T Consensus       177 ~L~~~D~dG~~~-~~l~~~~~~v~~p~wSPD-G~~la~~s~~--~~~~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        177 QLQISDADGQNA-QSALSSPEPIISPAWSPD-GTKLAYVSFE--SKKPVVYVHDLAT---GRR-RVVANFKGSNSAPAWS  248 (427)
T ss_pred             EEEEECCCCCCc-eEeccCCCCcccceEcCC-CCEEEEEEcc--CCCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence            677777654321 222223446788999999 5666554332  2234689999876   333 2333344455678999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~  228 (434)
                      |||+.|++..+.+         |...||.++..+.....+. ...+.+.+..|+|||+++++.+ ...+  .+.++|+.+
T Consensus       249 PDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        249 PDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGIDTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCCCcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCC
Confidence            9999987754321         3346888877665333322 2234556789999999998753 3334  444445544


Q ss_pred             ceeE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871          229 RPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                      ....  .++........|||||++|+..+..+....|++||+.+++..............|+|||++|+.++..     .
T Consensus       318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~-----~  392 (427)
T PRK02889        318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ-----G  392 (427)
T ss_pred             CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec-----C
Confidence            3322  23333344689999999999876443334799999988765443333334458999999999999873     2


Q ss_pred             C--cEEEEeecCceeeee--ecccceeeEEEcC
Q 013871          307 N--GIKIFHHNGSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       307 ~--~i~iw~~~g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      +  .+.+-+.+|......  +..++...+|.|.
T Consensus       393 g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        393 GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence            2  245556678765544  3357788888875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.67  E-value=6.2e-14  Score=138.97  Aligned_cols=109  Identities=17%  Similarity=0.373  Sum_probs=90.3

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ..++..+..+.....|++  +..+-.|.++|..+..+ ..|  |...+|++.|||||++|++++   +|++|++||+-++
T Consensus       534 ~~~~~~iv~hr~s~l~a~--~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDlpt~  608 (910)
T KOG1539|consen  534 GSSITGIVYHRVSDLLAI--ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDLPTG  608 (910)
T ss_pred             CCCcceeeeeehhhhhhh--hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEeccCc
Confidence            567777888877777775  45567999999976543 444  789999999999999999999   7779999999999


Q ss_pred             EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+|-.+.-. ..+.+.+||.|.+|||+..+     .++|.+|.
T Consensus       609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd-----~~gIylWs  646 (910)
T KOG1539|consen  609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVD-----QNGIYLWS  646 (910)
T ss_pred             ceeeeEecCCcceeeEECCCCCEEEEEEec-----CceEEEEE
Confidence            999877655 44569999999999999982     39999997

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.67  E-value=3.2e-15  Score=146.83  Aligned_cols=263  Identities=14%  Similarity=0.230  Sum_probs=177.9

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      .+.-.+|-..++.++...+.+|.++.........+..       -.+.++.|+.-..+.||+.     ...+.|.+|++.
T Consensus        44 AIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~-----s~nG~i~vWdln  118 (839)
T KOG0269|consen   44 AISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC-----STNGVISVWDLN  118 (839)
T ss_pred             eEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee-----cCCCcEEEEecC
Confidence            5667788888888888888999876533211111111       1245667775445666654     344689999996


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-  205 (434)
                      .......+....-|...+.++.|++....+++..+  .|.+.+       +|.+......  .........|.+|+|+| 
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGS--QDg~vK-------~~DlR~~~S~--~t~~~nSESiRDV~fsp~  187 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGS--QDGTVK-------CWDLRSKKSK--STFRSNSESIRDVKFSPG  187 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecC--CCceEE-------EEeeeccccc--ccccccchhhhceeeccC
Confidence            53223333444556777889999999888877543  445555       4444333221  11112357899999999 


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc----ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC
Q 013871          206 SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA  279 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~----~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~  279 (434)
                      .+.+|+  ++...|.+.+||++.    ...+..|.+++.|+.|+|++.+||+||.|   ++|+|||..+.  +.+.+++.
T Consensus       188 ~~~~F~--s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD---K~vkiWd~t~~~~~~~~tInT  262 (839)
T KOG0269|consen  188 YGNKFA--SIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD---KMVKIWDMTDSRAKPKHTINT  262 (839)
T ss_pred             CCceEE--EecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC---ccEEEEeccCCCccceeEEee
Confidence            466777  678889999999973    33334499999999999999999999944   69999998855  34555544


Q ss_pred             C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce----eeeeecccceeeEEEcCCCCCC
Q 013871          280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL----FFKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       280 ~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~----~~~~~~~~~~~~~w~p~~~~~~  340 (434)
                      . .+..+.|-|+-++.+..++   +-+|-.|+|||+.-.-    .+..+.+.+..++|+-..+.++
T Consensus       263 iapv~rVkWRP~~~~hLAtcs---mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l  325 (839)
T KOG0269|consen  263 IAPVGRVKWRPARSYHLATCS---MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINL  325 (839)
T ss_pred             cceeeeeeeccCccchhhhhh---ccccceEEEEeeccccccceeeeccCccccceeccCCCceee
Confidence            3 4455999999887555443   3458899999997653    3445667788888987555444

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=3.6e-14  Score=134.82  Aligned_cols=308  Identities=15%  Similarity=0.222  Sum_probs=195.3

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC------------C
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT------------N   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~------------~   70 (434)
                      +-+.|||.|+||+|..      -.-|.+|--.+-..++.|.+     ..+..+.|||.++||++-+-            .
T Consensus       214 tyv~wSP~GTYL~t~H------k~GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFH------KQGIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeEEecCCceEEEEEe------ccceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            3578999999999988      24599997666666777766     34557899999999998421            4


Q ss_pred             eEEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871           71 EIQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .|.|||+.++........   ....-.-+.||-+ +.++|....      ..|.||+.+.   -..+-.++.--..+..+
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D-dKy~Arm~~------~sisIyEtps---f~lld~Kslki~gIr~F  352 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD-DKYFARMTG------NSISIYETPS---FMLLDKKSLKISGIRDF  352 (698)
T ss_pred             eEEEEEccccchhcceeccCCCccccceEEeccC-CceeEEecc------ceEEEEecCc---eeeecccccCCccccCc
Confidence            899999988654332222   1122345789988 677776433      4688898887   33444444445567789


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCC--------
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMP--------  218 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~--------  218 (434)
                      .|+|.++.|++-+ .+.+....      .+-++.+.....-+. .|- .-.-..+-|-.+|.+||+-.....        
T Consensus       353 swsP~~~llAYwt-pe~~~~pa------rvtL~evPs~~~iRt~nlf-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f  424 (698)
T KOG2314|consen  353 SWSPTSNLLAYWT-PETNNIPA------RVTLMEVPSKREIRTKNLF-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQF  424 (698)
T ss_pred             ccCCCcceEEEEc-ccccCCcc------eEEEEecCccceeeeccce-eeeccEEEeccCCcEEEEEEEeeccccccceE
Confidence            9999988766543 22222111      122333333221111 110 001124678899999998432211        


Q ss_pred             CeEEEEeccc--ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C---EEEEEeeCCCceEEEECCCC
Q 013871          219 ASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G---KQLGTTRAECSVTSEWSPDG  291 (434)
Q Consensus       219 ~~v~l~d~~~--~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~---~~i~~~~~~~~~~~~wspdg  291 (434)
                      ..+.||.++-  -++-.. -...+...+|-|.|..+++-.......++.+|-+++ .   +++..+.......+.|||.|
T Consensus       425 ~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG  504 (698)
T KOG2314|consen  425 SNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKG  504 (698)
T ss_pred             eeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCC
Confidence            1344555542  222223 256788899999998776654333467899998873 2   45666665566679999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCcee---eeeecccceeeEEEcCCCCCCCC
Q 013871          292 RYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~prl~~D~~i~iw~~~g~~~---~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++++.|+...   ..+.+..+|.+-..+   ..........+.|.|.+.++...
T Consensus       505 ~fvvva~l~s---~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  505 RFVVVAALVS---RRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             cEEEEEEecc---cccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence            9999988733   267888888864222   22233357789999999887765

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.67  E-value=1.1e-14  Score=132.42  Aligned_cols=229  Identities=13%  Similarity=0.273  Sum_probs=151.7

Q ss_pred             EEecC--CCcEEEEEecCCCCCCCcEEEEEcCC----------------CcEEEEEeecCcCCCCCCeeeecC--CCcEE
Q 013871            5 LTCLR--VGLIIQTFQKSSTPQEKNVILWKTET----------------GEAVYQLFQKNMTKTTWPSIRFSS--DEAVA   64 (434)
Q Consensus         5 l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~----------------g~~~~~~~~~~~~~~~~~~~~~S~--d~~~l   64 (434)
                      +.-++  +..++++|+     +.+.|.||++..                .+++.++..+..  .++ .+.|||  .|. |
T Consensus       157 vr~~~~~~~~~~asws-----e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy-~LdWSp~~~g~-L  227 (440)
T KOG0302|consen  157 VRVSRLGNEVLCASWS-----ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGY-GLDWSPIKTGR-L  227 (440)
T ss_pred             eeecccCCcceeeeec-----ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cce-eeecccccccc-c
Confidence            34444  446888898     789999999832                234666666543  677 899999  333 3


Q ss_pred             EEe-cCCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871           65 CRM-ATNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        65 a~~-~~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      +++ ..+.|++|...+..-.   .....|...|.++.|||.....++     +.+.++.|+||++...   .        
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfa-----ScS~DgsIrIWDiRs~---~--------  291 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFA-----SCSCDGSIRIWDIRSG---P--------  291 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEE-----eeecCceEEEEEecCC---C--------
Confidence            334 3469999998763311   122345667889999998777666     3567789999998762   1        


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                                 ....+  ++                       ..        +++.|+.+.|+..-..||  +|..+|.
T Consensus       292 -----------~~~~~--~~-----------------------kA--------h~sDVNVISWnr~~~lLa--sG~DdGt  325 (440)
T KOG0302|consen  292 -----------KKAAV--ST-----------------------KA--------HNSDVNVISWNRREPLLA--SGGDDGT  325 (440)
T ss_pred             -----------cccee--Ee-----------------------ec--------cCCceeeEEccCCcceee--ecCCCce
Confidence                       11111  10                       11        156788899987777555  7999999


Q ss_pred             EEEEeccc----cee--EEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------EEE
Q 013871          221 ATIFNKKC----RPI--LELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------KQL  274 (434)
Q Consensus       221 v~l~d~~~----~~~--~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------~~i  274 (434)
                      +.|||++.    .++  +.+|+.+|++|.|+|+.. .|+++|.|+   +|.|||+.--                   +++
T Consensus       326 ~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~---QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL  402 (440)
T KOG0302|consen  326 LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDN---QITIWDLSVEADEEEIDQEAAEGLQDLPPQLL  402 (440)
T ss_pred             EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCC---cEEEEEeeccCChhhhccccccchhcCCceeE
Confidence            99999973    333  455999999999999875 666666554   9999998621                   122


Q ss_pred             EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       275 ~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      ...++. .+-.+.|++.-.-++..+.      -.++.||.
T Consensus       403 FVHqGQke~KevhWH~QiPG~lvsTa------~dGfnVfk  436 (440)
T KOG0302|consen  403 FVHQGQKEVKEVHWHRQIPGLLVSTA------IDGFNVFK  436 (440)
T ss_pred             EEecchhHhhhheeccCCCCeEEEec------ccceeEEE
Confidence            233333 3344899998766666665      44566664

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.67  E-value=2.6e-15  Score=139.47  Aligned_cols=239  Identities=21%  Similarity=0.279  Sum_probs=159.0

Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-------CCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      .|..+..-|....+||.     +...+.|.||++.....       ..+-..+.+|..+-..+.||+.-...++.  ...
T Consensus       126 EVnRaRymPQnp~iVAt-----~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls--~~~  198 (422)
T KOG0264|consen  126 EVNRARYMPQNPNIVAT-----KTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS--GSD  198 (422)
T ss_pred             cchhhhhCCCCCcEEEe-----cCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee--ccC
Confidence            35555666665556663     44556899999875421       12223667777777889999987655443  334


Q ss_pred             cccCceeecceeEEEEeeCCcce-----eeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc--ce---eEE
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHE-----GLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RP---ILE  233 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~-----~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~--~~---~~~  233 (434)
                      |.++.       +|.+...+...     ..+--.++..|.+++|+|-.. .|+  +...++.+.|||++.  ..   ...
T Consensus       199 d~~i~-------lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~--sv~dd~~L~iwD~R~~~~~~~~~~~  269 (422)
T KOG0264|consen  199 DHTIC-------LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG--SVGDDGKLMIWDTRSNTSKPSHSVK  269 (422)
T ss_pred             CCcEE-------EEeccccccCCccccceEEeecCCcceehhhccccchhhhe--eecCCCeEEEEEcCCCCCCCccccc
Confidence            44444       44444333211     111123578999999999654 455  455688999999984  22   223


Q ss_pred             eCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          234 LGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       234 ~~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                      -|.++++|++|+|.+.+ ||+|+   .|++|.+||+++. +.+.++.+|  .+..+.|||+-..++..+..     |+.+
T Consensus       270 ah~~~vn~~~fnp~~~~ilAT~S---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~-----D~rl  341 (422)
T KOG0264|consen  270 AHSAEVNCVAFNPFNEFILATGS---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT-----DRRL  341 (422)
T ss_pred             ccCCceeEEEeCCCCCceEEecc---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc-----CCcE
Confidence            37899999999998875 55555   5679999999987 577888887  66679999997765554443     9999


Q ss_pred             EEEeecC--c-------------e--eeeeecccceeeEEEcCCCCCCCCchhhhhccCccccccc
Q 013871          310 KIFHHNG--S-------------L--FFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSLKVAET  358 (434)
Q Consensus       310 ~iw~~~g--~-------------~--~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~  358 (434)
                      .|||++.  +             +  ++..+...+.++.|+|..|.++..-.+    -..++|+.+
T Consensus       342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~  403 (422)
T KOG0264|consen  342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQM  403 (422)
T ss_pred             EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC----CceEEEeec
Confidence            9999932  1             2  233466789999999999988765321    133556554

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.6e-14  Score=143.73  Aligned_cols=256  Identities=11%  Similarity=0.096  Sum_probs=191.5

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+..++|.|.--++.++ .++.|++||..=........-|...|+.+.|+|.. +++.     ++|.+-.|++|++.+ 
T Consensus        10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-plFV-----SGGDDykIkVWnYk~-   82 (1202)
T KOG0292|consen   10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-PLFV-----SGGDDYKIKVWNYKT-   82 (1202)
T ss_pred             ccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-CeEE-----ecCCccEEEEEeccc-
Confidence            455578999988877776 78999999975433333444566679999999984 4332     468888999999988 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~  208 (434)
                        .+.+.++..|-..+..+.|++.=-+|+.   ...|++++.|.-         ......-+...+.-.|.+.+|+|...
T Consensus        83 --rrclftL~GHlDYVRt~~FHheyPWIlS---ASDDQTIrIWNw---------qsr~~iavltGHnHYVMcAqFhptED  148 (1202)
T KOG0292|consen   83 --RRCLFTLLGHLDYVRTVFFHHEYPWILS---ASDDQTIRIWNW---------QSRKCIAVLTGHNHYVMCAQFHPTED  148 (1202)
T ss_pred             --ceehhhhccccceeEEeeccCCCceEEE---ccCCCeEEEEec---------cCCceEEEEecCceEEEeeccCCccc
Confidence              8999999999999999999998777654   336777775532         11111122223467889999999877


Q ss_pred             EEEEEEccCCCeEEEEecccc----------------------------eeE----EeCCcCeeEEEECCCCCeEEEEec
Q 013871          209 EFAVVYGFMPASATIFNKKCR----------------------------PIL----ELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~----------------------------~~~----~~~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      .++  +++-|.+|++||+.+-                            .+.    +-|...||-++|+|.--+|++|+ 
T Consensus       149 lIV--SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~-  225 (1202)
T KOG0292|consen  149 LIV--SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA-  225 (1202)
T ss_pred             eEE--EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC-
Confidence            776  7888999999996310                            011    12677899999999999999998 


Q ss_pred             CCCCCeEEEEEccCCE--EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---eeeeeccccee
Q 013871          257 GNLPGDMAFWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---FFKKMFDKLFQ  329 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~--~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~---~~~~~~~~~~~  329 (434)
                        .|..|++|-++.-+  .+-+..+|  +++++-|+|....|++.+.      |.+|+|||++.+.   .+....+++|.
T Consensus       226 --DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsE------DksirVwDm~kRt~v~tfrrendRFW~  297 (1202)
T KOG0292|consen  226 --DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSE------DKSIRVWDMTKRTSVQTFRRENDRFWI  297 (1202)
T ss_pred             --CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCC------CccEEEEecccccceeeeeccCCeEEE
Confidence              44599999877543  34455566  7788999999999999999      9999999997653   34446678999


Q ss_pred             eEEEcCCC
Q 013871          330 AEWKPVSP  337 (434)
Q Consensus       330 ~~w~p~~~  337 (434)
                      ++=+|.-.
T Consensus       298 laahP~lN  305 (1202)
T KOG0292|consen  298 LAAHPELN  305 (1202)
T ss_pred             EEecCCcc
Confidence            99998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.67  E-value=2.1e-15  Score=141.46  Aligned_cols=232  Identities=12%  Similarity=0.161  Sum_probs=171.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |+++.++|||+.|++.+     +-.+|.|||+..-..-............. .++.|||.+++.++ .|+.|.|||+.+-
T Consensus       468 iRSckL~pdgrtLivGG-----eastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  468 IRSCKLLPDGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             eeeeEecCCCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccc
Confidence            67889999999999988     67899999997654321111111011233 68899999977665 7899999999987


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ......+.+.+++.++.+|+++-. +  |   ++|.++.||-||+..   +..+.+.. |...+.++...|.|.+|++.-
T Consensus       542 ~~VrqfqGhtDGascIdis~dGtk-l--W---TGGlDntvRcWDlre---grqlqqhd-F~SQIfSLg~cP~~dWlavGM  611 (705)
T KOG0639|consen  542 TLVRQFQGHTDGASCIDISKDGTK-L--W---TGGLDNTVRCWDLRE---GRQLQQHD-FSSQIFSLGYCPTGDWLAVGM  611 (705)
T ss_pred             eeeecccCCCCCceeEEecCCCce-e--e---cCCCccceeehhhhh---hhhhhhhh-hhhhheecccCCCccceeeec
Confidence            666667788899999999998533 2  2   478899999999987   55554443 456778889999999998753


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~  238 (434)
                      ..            .+++.+.+.+.. ....-.++..|.++.|++-|++|+  +..+|.-+..|..- +..+++. +...
T Consensus       612 en------------s~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfv--StGkDnlLnawrtPyGasiFqskE~Ss  676 (705)
T KOG0639|consen  612 EN------------SNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFV--STGKDNLLNAWRTPYGASIFQSKESSS  676 (705)
T ss_pred             cc------------CcEEEEecCCcc-ceeecccccEEEEEEecccCceee--ecCchhhhhhccCccccceeeccccCc
Confidence            21            124566655543 222223588999999999999999  56788888888774 5556665 6789


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      |.++..|-|.+||++|+.+.   ...||.
T Consensus       677 VlsCDIS~ddkyIVTGSGdk---kATVYe  702 (705)
T KOG0639|consen  677 VLSCDISFDDKYIVTGSGDK---KATVYE  702 (705)
T ss_pred             ceeeeeccCceEEEecCCCc---ceEEEE
Confidence            99999999999999988543   555554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1e-14  Score=129.73  Aligned_cols=260  Identities=14%  Similarity=0.192  Sum_probs=181.0

Q ss_pred             CCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           52 WPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      -.|++||+.|.+||.+ .+|.|.|||..++........|...|.+++||+++..++.      ...+..|.+|++..   
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~Llt------sS~D~si~lwDl~~---   96 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLT------SSRDWSIKLWDLLK---   96 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeee------ecCCceeEEEeccC---
Confidence            3489999999999998 6789999999998876677788889999999999544442      35667899999987   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe----EEEEECcC
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV----HDVQWSYS  206 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i----~~v~wspd  206 (434)
                      +.++.+.. |...+....|.|.....++.+..+.  ..         +.++........++.+.++..    ....|.+.
T Consensus        97 gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~--sp---------~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~  164 (405)
T KOG1273|consen   97 GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEE--SP---------VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR  164 (405)
T ss_pred             CCceeEEE-ccCccceeeeccccCCeEEEEEecC--Cc---------EEEEecCCceeeccCCCccccccccccccccCC
Confidence            66655544 5667788889997766655443221  11         122222121222333322222    22358888


Q ss_pred             CCEEEEEEccCCCeEEEEeccc-ceeEEe--C-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------E--E
Q 013871          207 GSEFAVVYGFMPASATIFNKKC-RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------K--Q  273 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~-~~~~~~--~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-------~--~  273 (434)
                      |+++.  +|..-|++.+||..+ +.+..+  . ...+..|.++-.|++|++-..   |..|+.|+.+.-       +  .
T Consensus       165 g~yIi--tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~  239 (405)
T KOG1273|consen  165 GKYII--TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEP  239 (405)
T ss_pred             CCEEE--EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcCh
Confidence            99888  688889999999864 334443  3 367889999999999999884   459999997632       1  1


Q ss_pred             EEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ec-ccceeeEEEcCCCCCCCC
Q 013871          274 LGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       274 i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ...++.-    .-..|.||.||.|++.++..     ...++||.- .|.++...  .. +++.+|.|+|..+.+.+-
T Consensus       240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             hHHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            1222211    11238999999999988863     789999997 57766554  33 679999999998776664

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.66  E-value=2.8e-14  Score=130.89  Aligned_cols=292  Identities=16%  Similarity=0.191  Sum_probs=182.8

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEE
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~   73 (434)
                      |..+.|.+.+. .|+|++     .|..|+||.+..++      .+.-......|...++++.|+|+|.+||++.| ++|.
T Consensus        16 v~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   16 VYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             eEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            56788888776 999988     89999999885432      22222222335578889999999999999976 5999


Q ss_pred             EEeCCC-------------CCCcee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013871           74 FFDTTD-------------FPKGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        74 v~~~~~-------------~~~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                      +|...+             .+...+   ...|.+.|.+++|+|++ ..+..     +..+..+++|++..   ++.++..
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s-----~s~dns~~l~Dv~~---G~l~~~~  161 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVS-----GSVDNSVRLWDVHA---GQLLAIL  161 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeee-----eeccceEEEEEecc---ceeEeec
Confidence            998761             010111   12334678999999994 44432     34557899999988   8889999


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCcee--ecceeEEEEe-------eC-CcceeeeecCCC----CCeEEEEE
Q 013871          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLT-------TD-GTHEGLVPLRKE----GPVHDVQW  203 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~-------~~-~~~~~~v~l~~~----~~i~~v~w  203 (434)
                      ..|...+--++|.|-+++++...   .|...+.+  .-..-++.+.       .. ........+-++    .-.+.++|
T Consensus       162 ~dh~~yvqgvawDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf  238 (434)
T KOG1009|consen  162 DDHEHYVQGVAWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF  238 (434)
T ss_pred             cccccccceeecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence            99999999999999999876542   33322211  1111112111       00 000001111111    12245789


Q ss_pred             CcCCCEEEEEEccC-------CCeEEEEecc--cceeEEe--CCcCeeEEEE------------------CCCCCeEEEE
Q 013871          204 SYSGSEFAVVYGFM-------PASATIFNKK--CRPILEL--GSGPYNTVRW------------------NPKGKFLCLA  254 (434)
Q Consensus       204 spdg~~~av~~g~~-------~~~v~l~d~~--~~~~~~~--~~~~~~~i~~------------------SP~g~~l~~~  254 (434)
                      +|||..++.-+|.-       .+..++|+-+  ..+...+  ...+...+.|                  -|.+-.+|+|
T Consensus       239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA  318 (434)
T KOG1009|consen  239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA  318 (434)
T ss_pred             CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe
Confidence            99998887432221       2245666532  2222222  1222222222                  3445556666


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871          255 GFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~  320 (434)
                      ..+    .|+|||.++.+.+.....   +.+++++||+||.+|+..++      |+-.-+-.+.+..+.
T Consensus       319 t~~----svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~------DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  319 TKN----SVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSST------DGFCSLVTFEPWELG  377 (434)
T ss_pred             ecc----eEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEecc------CCceEEEEEcchhcc
Confidence            533    699999998776655433   47778999999999999999      988887777666544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=1.2e-14  Score=135.17  Aligned_cols=264  Identities=13%  Similarity=0.137  Sum_probs=180.6

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+++++|.|.-.+|.++ .|+.++||.++.........+++.  .|....|+|++...+++     .+.......|++.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~-----s~rrky~ysyDle  288 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT-----SGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe-----cccceEEEEeecc
Confidence            677899999999887776 588999999876443333344443  58889999985434442     3444577889987


Q ss_pred             CCCCCCceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          127 KDLQSQPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                      ... -..+...... ....-.+.-++++++|++..     ..+       -|+++..... +-...+..+|.|.+++|+.
T Consensus       289 ~ak-~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-----~~G-------~I~lLhakT~-eli~s~KieG~v~~~~fsS  354 (514)
T KOG2055|consen  289 TAK-VTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-----NNG-------HIHLLHAKTK-ELITSFKIEGVVSDFTFSS  354 (514)
T ss_pred             ccc-cccccCCCCcccchhheeEecCCCCeEEEcc-----cCc-------eEEeehhhhh-hhhheeeeccEEeeEEEec
Confidence            621 1111111111 12234567899999877642     111       2566654443 3333444589999999999


Q ss_pred             CCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEE
Q 013871          206 SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLG  275 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~  275 (434)
                      ||+.+.++.  .++.|++||++.. .++.+   +.-.-++++.|++|.|||+|+   ..|-|.|||.++.      +.+.
T Consensus       355 dsk~l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik  429 (514)
T KOG2055|consen  355 DSKELLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIK  429 (514)
T ss_pred             CCcEEEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchh
Confidence            998888743  3579999999754 34444   223346799999999999998   6689999997643      3444


Q ss_pred             EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee------ecccceeeEEEcCCCCCCC
Q 013871          276 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       276 ~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~------~~~~~~~~~w~p~~~~~~~  341 (434)
                      .+..-  .++.+.|+||++.|+.++.    .+++.+|+-|+-...++..      ....+.+++|+|.+-++.-
T Consensus       430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAv  499 (514)
T KOG2055|consen  430 TVDNLTTAITSLQFNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAV  499 (514)
T ss_pred             hhhhhheeeeeeeeCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEe
Confidence            44332  5666999999999999887    3489999999977766653      3457899999998655443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.1e-14  Score=141.24  Aligned_cols=252  Identities=13%  Similarity=0.099  Sum_probs=152.8

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeee
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYR   87 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~   87 (434)
                      ..|+.....  ....+|.+||. +|...+.+....   ..+.+++|||||+.|++...    ..|.+||+.....   ..
T Consensus       164 ~~iayv~~~--~~~~~L~~~D~-dG~~~~~l~~~~---~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~  234 (427)
T PRK02889        164 TRIAYVIKT--GNRYQLQISDA-DGQNAQSALSSP---EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RV  234 (427)
T ss_pred             cEEEEEEcc--CCccEEEEECC-CCCCceEeccCC---CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EE
Confidence            345554421  12457888886 455445544332   45558999999999988742    3699999976432   22


Q ss_pred             ee-c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           88 LR-V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        88 ~~-~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      +. . ..+....|||+ +..+++....    .+...||.+...  +..+..++.+........|+|||+.|++...    
T Consensus       235 l~~~~g~~~~~~~SPD-G~~la~~~~~----~g~~~Iy~~d~~--~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~----  303 (427)
T PRK02889        235 VANFKGSNSAPAWSPD-GRTLAVALSR----DGNSQIYTVNAD--GSGLRRLTQSSGIDTEPFFSPDGRSIYFTSD----  303 (427)
T ss_pred             eecCCCCccceEECCC-CCEEEEEEcc----CCCceEEEEECC--CCCcEECCCCCCCCcCeEEcCCCCEEEEEec----
Confidence            22 2 24567899999 4555443221    223455554321  2234444444444567889999999877421    


Q ss_pred             ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeC-CcCeeEEE
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELG-SGPYNTVR  243 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~-~~~~~~i~  243 (434)
                      ..     |...||.++..+.....+... .......+|||||+.+++.+... ...|.+||+.......+. ........
T Consensus       304 ~~-----g~~~Iy~~~~~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~  377 (427)
T PRK02889        304 RG-----GAPQIYRMPASGGAAQRVTFT-GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPS  377 (427)
T ss_pred             CC-----CCcEEEEEECCCCceEEEecC-CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCce
Confidence            11     233578887766544444433 23345689999999999754321 127899998765555542 23346789


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCC
Q 013871          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPD  290 (434)
Q Consensus       244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspd  290 (434)
                      |+|||++|+.+........+++.+.. ++....+..  ..+...+|||-
T Consensus       378 ~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        378 FAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             ECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence            99999999988755434567777774 443333332  24556899883

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.64  E-value=4e-14  Score=126.39  Aligned_cols=266  Identities=15%  Similarity=0.172  Sum_probs=166.8

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-------CcE-------EEEEeecCcCCCCCCeeee-------cCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-------GEA-------VYQLFQKNMTKTTWPSIRF-------SSDE   61 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-------g~~-------~~~~~~~~~~~~~~~~~~~-------S~d~   61 (434)
                      ..+.|||||+-|++-+     +|..+.+|++..       +..       ...+..    ...+-...|       -|+.
T Consensus        53 kgckWSPDGSciL~~s-----edn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e----g~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   53 KGCKWSPDGSCILSLS-----EDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE----GETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             ccceeCCCCceEEeec-----ccCeeeEEecChhhcccCCCCccccccceeEEecc----CCEEEEEEeeeccccCCCcc
Confidence            4578999999999988     899999999831       111       111111    122223334       2566


Q ss_pred             cEEEEec-CCeEEEEeCCCCCCceeee--ee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871           62 AVACRMA-TNEIQFFDTTDFPKGILYR--LR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        62 ~~la~~~-~~~i~v~~~~~~~~~~~~~--~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      .++|... ++-|++||..+.......+  -+   +....++.|+||+..++|       |....|++|++......-++.
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-------GykrcirvFdt~RpGr~c~vy  196 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-------GYKRCIRVFDTSRPGRDCPVY  196 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-------cccceEEEeeccCCCCCCcch
Confidence            7777664 5799999987754322211  11   234568999999777776       556789999984321011111


Q ss_pred             e-----eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871          136 R-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       136 ~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~  210 (434)
                      .     +...+.-+.+++++|-...++...         +|-....||.-  .+.....+...+.+.|..++|.++|++|
T Consensus       197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~g---------sY~q~~giy~~--~~~~pl~llggh~gGvThL~~~edGn~l  265 (406)
T KOG2919|consen  197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVG---------SYGQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCEDGNKL  265 (406)
T ss_pred             hhhhcccccccceeeeeeccCCCCcceeee---------cccceeeeEec--CCCCceeeecccCCCeeeEEeccCcCee
Confidence            1     111133445777888655333221         22222234432  2222333333568999999999999999


Q ss_pred             EEEEccCCCeEEEEecc--cceeEEe--C---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--
Q 013871          211 AVVYGFMPASATIFNKK--CRPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--  280 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~--~~~~~~~--~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--  280 (434)
                      .+- ...+.+|..||++  ..++..+  |   +..+..+...|+|++|++|+   .+|.|.+||+++ +..+..+..+  
T Consensus       266 fsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG~V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  266 FSG-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDGSVRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             ccc-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCccEEEEecCCCCCcccccccccc
Confidence            852 3346699999997  3455555  2   44555677789999999987   678999999998 5655555544  


Q ss_pred             CceEEEECCCCCEEEEEEc
Q 013871          281 CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~  299 (434)
                      .+..++++|--..++|++.
T Consensus       342 ~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cccceecCcccceeeeccC
Confidence            4445999999887777764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=3.3e-13  Score=134.38  Aligned_cols=242  Identities=12%  Similarity=0.096  Sum_probs=150.8

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|....+. .........+....|||+ +..+++...+.  ....|.++++..   ++. ...+.+......+.|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPD-G~~La~~s~~~--g~~~L~~~dl~t---g~~-~~lt~~~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPD-GRKLAYVSFEN--RKAEIFVQDIYT---QVR-EKVTSFPGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCC-CCEEEEEEecC--CCcEEEEEECCC---CCe-EEecCCCCCcCCeeEC
Confidence            677777655332 222222345778999999 56665544332  224677888765   332 2233333344578999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~  229 (434)
                      |||+.|++..+.+         |...||.++..+.....++. ........+|+|||+.+++.+... ...+.++|+.+.
T Consensus       271 PDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g  340 (448)
T PRK04792        271 PDGKKLALVLSKD---------GQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG  340 (448)
T ss_pred             CCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999988764321         33468888877654333322 234567799999999998754321 236777788655


Q ss_pred             eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      ....+  .........|||||++|+..+..+....|.++|+.+++..............|+|||++|+.++..     ++
T Consensus       341 ~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~-----~g  415 (448)
T PRK04792        341 KVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY-----QG  415 (448)
T ss_pred             CEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec-----CC
Confidence            44433  323334579999999998877544334677789888754332222222346899999999988862     33


Q ss_pred             --cEEEEeecCceeeeeec--ccceeeEEEcC
Q 013871          308 --GIKIFHHNGSLFFKKMF--DKLFQAEWKPV  335 (434)
Q Consensus       308 --~i~iw~~~g~~~~~~~~--~~~~~~~w~p~  335 (434)
                        .+.+++.+|........  .++....|+|.
T Consensus       416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~  447 (448)
T PRK04792        416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF  447 (448)
T ss_pred             ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence              36777888886655432  45677788874

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=2.9e-14  Score=127.52  Aligned_cols=294  Identities=14%  Similarity=0.176  Sum_probs=184.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      |..|.|+.|.-|++..-    ..|+.|.+|++..-+--..+...+   .+...+.|||||+.+..-  .+-.|.||.+.+
T Consensus        51 i~yieW~ads~~ilC~~----yk~~~vqvwsl~Qpew~ckIdeg~---agls~~~WSPdgrhiL~tseF~lriTVWSL~t  123 (447)
T KOG4497|consen   51 IVYIEWKADSCHILCVA----YKDPKVQVWSLVQPEWYCKIDEGQ---AGLSSISWSPDGRHILLTSEFDLRITVWSLNT  123 (447)
T ss_pred             hhheeeeccceeeeeee----eccceEEEEEeecceeEEEeccCC---CcceeeeECCCcceEeeeecceeEEEEEEecc
Confidence            45678888888887644    157899999998776655554443   566689999999876655  356999999987


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      -. +........++..++|.|+ +.+.++....  .-...+.|.....   =..+.....-..+.+.+.|+|||+.|++.
T Consensus       124 ~~-~~~~~~pK~~~kg~~f~~d-g~f~ai~sRr--DCkdyv~i~~c~~---W~ll~~f~~dT~DltgieWsPdg~~laVw  196 (447)
T KOG4497|consen  124 QK-GYLLPHPKTNVKGYAFHPD-GQFCAILSRR--DCKDYVQISSCKA---WILLKEFKLDTIDLTGIEWSPDGNWLAVW  196 (447)
T ss_pred             ce-eEEecccccCceeEEECCC-Cceeeeeecc--cHHHHHHHHhhHH---HHHHHhcCCCcccccCceECCCCcEEEEe
Confidence            33 2323333457899999999 5666654332  1111222211100   00001111122355678999999998774


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-------------
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-------------  226 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-------------  226 (434)
                      -+. .+.         .+|..      +.      .-.+..++|+|.++.++|  |+-|+.+++.+.             
T Consensus       197 d~~-Ley---------kv~aY------e~------~lG~k~v~wsP~~qflav--GsyD~~lrvlnh~tWk~f~eflhl~  252 (447)
T KOG4497|consen  197 DNV-LEY---------KVYAY------ER------GLGLKFVEWSPCNQFLAV--GSYDQMLRVLNHFTWKPFGEFLHLC  252 (447)
T ss_pred             cch-hhh---------eeeee------ee------ccceeEEEeccccceEEe--eccchhhhhhceeeeeehhhhccch
Confidence            211 111         11211      11      235678888888888875  666655443320             


Q ss_pred             --------------------------------c------cce----------eE------Ee--CCcCeeEEEECCCCCe
Q 013871          227 --------------------------------K------CRP----------IL------EL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       227 --------------------------------~------~~~----------~~------~~--~~~~~~~i~~SP~g~~  250 (434)
                                                      .      .+.          ++      ++  ....+.-++||+|..|
T Consensus       253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y  332 (447)
T KOG4497|consen  253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY  332 (447)
T ss_pred             hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence                                            0      000          00      00  1123445999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc--cc
Q 013871          251 LCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--KL  327 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~--~~  327 (434)
                      +++-. ++....+.+||+++.+....+ +-+.+..+.|.|.-..|+.++.      ...+.+|...|..+...+..  .+
T Consensus       333 ~aTrn-d~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg------~srLY~W~psg~~~V~vP~~GF~i  405 (447)
T KOG4497|consen  333 AATRN-DKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTG------KSRLYFWAPSGPRVVGVPKKGFNI  405 (447)
T ss_pred             Eeeec-CCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcC------CceEEEEcCCCceEEecCCCCcee
Confidence            99864 557789999999988765554 3356777999999999999988      55679999999665555444  46


Q ss_pred             eeeEEEcCCCCCC
Q 013871          328 FQAEWKPVSPDKF  340 (434)
Q Consensus       328 ~~~~w~p~~~~~~  340 (434)
                      ..+.|.-.+..+.
T Consensus       406 ~~l~W~~~g~~i~  418 (447)
T KOG4497|consen  406 QKLQWLQPGEFIV  418 (447)
T ss_pred             eeEEecCCCcEEE
Confidence            7888987766543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=7.2e-13  Score=131.04  Aligned_cols=247  Identities=10%  Similarity=0.053  Sum_probs=146.7

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+.|.+.... ...+.....+.+..|||++.....+|+....+ ...|.+.++..   ++ ...++.+........|+
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g-~~~I~~~~l~~---g~-~~~lt~~~g~~~~p~wS  239 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLG-VPKIFLGSLEN---PA-GKKILALQGNQLMPTFS  239 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCC-CceEEEEECCC---CC-ceEeecCCCCccceEEC
Confidence            566666654332 21222233456789999965433334443333 34677777765   32 23334455556678999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEE--eeCC---cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYL--TTDG---THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI  223 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l--~~~~---~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l  223 (434)
                      |||+.|++..+..         |...+|..  +...   .....+.-...+.....+|||||+.+++++. .++  .+.+
T Consensus       240 PDG~~Laf~s~~~---------g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~  309 (428)
T PRK01029        240 PRKKLLAFISDRY---------GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN-KDGRPRIYI  309 (428)
T ss_pred             CCCCEEEEEECCC---------CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC-CCCCceEEE
Confidence            9999998764221         11123332  2221   1112222111234467899999999998653 234  4555


Q ss_pred             Eecc--cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871          224 FNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       224 ~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                      +++.  +.....+  +...+....|||||++|+..+..+....|++||+.+++........ ......|+|||++|+..+
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence            5653  2223323  3455678999999999988765443468999999988655444332 445589999999998766


Q ss_pred             cCCceeeCCcEEEEeecCceeeee--ecccceeeEEEcCC
Q 013871          299 TAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVS  336 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~g~~~~~~--~~~~~~~~~w~p~~  336 (434)
                      ..   +-+..|.+|++++......  ...+.....|+|..
T Consensus       390 ~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        390 GN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             CC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence            52   1135688888877644433  22356788888764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.61  E-value=2.3e-14  Score=138.48  Aligned_cols=243  Identities=14%  Similarity=0.141  Sum_probs=172.5

Q ss_pred             eEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC--c----EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871            4 LLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG--E----AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         4 ~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g--~----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      ++..+ |.|+||.|.+     .|+.|++|++...  +    .+.++.++   .+-+..+....+++-|++++ |-+|++|
T Consensus        29 ~Lq~da~~~ryLfTgG-----RDg~i~~W~~~~d~~~~s~~~~asme~H---sDWVNDiiL~~~~~tlIS~SsDtTVK~W  100 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGG-----RDGIIRLWSVTQDSNEPSTPYIASMEHH---SDWVNDIILCGNGKTLISASSDTTVKVW  100 (735)
T ss_pred             hccccCCCCceEEecC-----CCceEEEeccccccCCcccchhhhhhhh---HhHHhhHHhhcCCCceEEecCCceEEEe
Confidence            45555 5678899988     7899999998432  1    23344443   24455566667887777774 5699999


Q ss_pred             eCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           76 DTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      +.....  .....+-|.+-|.+++........+|     ++|.+..|.||++...   ....          ...++   
T Consensus       101 ~~~~~~~~c~stir~H~DYVkcla~~ak~~~lva-----SgGLD~~IflWDin~~---~~~l----------~~s~n---  159 (735)
T KOG0308|consen  101 NAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVA-----SGGLDRKIFLWDINTG---TATL----------VASFN---  159 (735)
T ss_pred             ecccCcchhHhhhhcccchheeeeecccCceeEE-----ecCCCccEEEEEccCc---chhh----------hhhcc---
Confidence            987653  22344566777888888333245555     5789999999999762   1100          00000   


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeE
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPIL  232 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~  232 (434)
                       .                     +-        .+........+|++++-.++|..  +++|+..+.+++||-+ +..+.
T Consensus       160 -~---------------------~t--------~~sl~sG~k~siYSLA~N~t~t~--ivsGgtek~lr~wDprt~~kim  207 (735)
T KOG0308|consen  160 -N---------------------VT--------VNSLGSGPKDSIYSLAMNQTGTI--IVSGGTEKDLRLWDPRTCKKIM  207 (735)
T ss_pred             -c---------------------cc--------cccCCCCCccceeeeecCCcceE--EEecCcccceEEecccccccee
Confidence             0                     00        00000022578999999999944  4478888999999986 44455


Q ss_pred             Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871          233 EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       233 ~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                      .+  |+..|..+..++||+.+++++   .||+|++||+...+++.++..|  .++.+.-+|+=.++.+|+.      |+.
T Consensus       208 kLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r------d~~  278 (735)
T KOG0308|consen  208 KLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR------DGN  278 (735)
T ss_pred             eeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC------CCc
Confidence            55  889999999999999999998   6789999999999999999887  5666888899999999999      999


Q ss_pred             EEEEeecC
Q 013871          309 IKIFHHNG  316 (434)
Q Consensus       309 i~iw~~~g  316 (434)
                      |..=++..
T Consensus       279 i~~Tdl~n  286 (735)
T KOG0308|consen  279 IYRTDLRN  286 (735)
T ss_pred             EEecccCC
Confidence            88877744

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=3.2e-13  Score=126.07  Aligned_cols=289  Identities=11%  Similarity=0.136  Sum_probs=195.5

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSK  100 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp  100 (434)
                      +..++.+||+.||..+-+|.+....+..  .+. .=.+.|++++  ....|++|.+....... .+...+ .|.++.-+|
T Consensus        16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~--sl~-~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n   91 (476)
T KOG0646|consen   16 DPINCIVWDLRTGTSLLQYKGSYLAQAA--SLT-ALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSN   91 (476)
T ss_pred             CCcceeEEecCCCceeEEecCcccccch--hhh-hhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCC
Confidence            3467999999999998888765211100  000 0134677666  34599999987644322 233344 477788888


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      ++ .+++     .++..+.+.+|.+.+   +..+..+..|-..++++.|+.||.+++..   ..|.....|.-   ..++
T Consensus        92 ~G-~~l~-----ag~i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTg---skDg~V~vW~l---~~lv  156 (476)
T KOG0646|consen   92 LG-YFLL-----AGTISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITG---SKDGAVLVWLL---TDLV  156 (476)
T ss_pred             Cc-eEEE-----eecccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEec---CCCccEEEEEE---Eeec
Confidence            74 3333     134678999999998   88888888888899999999999986432   23433333321   1112


Q ss_pred             eeCCcceeeee----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCCCCeEEEE
Q 013871          181 TTDGTHEGLVP----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       181 ~~~~~~~~~v~----l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~g~~l~~~  254 (434)
                      +.+..+ ...+    -+|.-+|.++...+.|..-.+.+.+.|.++++||+. +..+.++ -...+++++..|-++.+.+|
T Consensus       157 ~a~~~~-~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  157 SADNDH-SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             ccccCC-CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEec
Confidence            222221 1111    134678999988876544444467889999999996 4445554 47788999999999999998


Q ss_pred             ecCCCCCeEEEEEccCC----------------EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          255 GFGNLPGDMAFWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~----------------~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +   .+|.|.+.++.+.                ..+..+.+|    .+++++.|-||..|++|+.      ||.|+|||+
T Consensus       236 t---~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~------dg~VcvWdi  306 (476)
T KOG0646|consen  236 T---EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE------DGKVCVWDI  306 (476)
T ss_pred             C---CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC------CCCEEEEec
Confidence            8   6789998876432                234444444    5778999999999999999      999999999


Q ss_pred             cCc-eeeee--ecccceeeEEEcCCCCCCC
Q 013871          315 NGS-LFFKK--MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       315 ~g~-~~~~~--~~~~~~~~~w~p~~~~~~~  341 (434)
                      ..+ ++...  ....+..+..+|..+.++.
T Consensus       307 ~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l  336 (476)
T KOG0646|consen  307 YSKQCIRTLQTSKGPVTNLQINPLERGIIL  336 (476)
T ss_pred             chHHHHHHHhhhccccceeEeeccccceec
Confidence            665 33332  4578888888887665554

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.61  E-value=2.9e-13  Score=119.57  Aligned_cols=284  Identities=13%  Similarity=0.157  Sum_probs=187.3

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCc------------EEEEEeecCcCCCCCCeeeecC-CCcEEEEe
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGE------------AVYQLFQKNMTKTTWPSIRFSS-DEAVACRM   67 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~------------~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~   67 (434)
                      |.+|+.-| .|+|+++.+     .|+.+.|||+++-.            ++-.-.+...|+..+..+.|=| |.-.+.++
T Consensus        46 vNsL~id~tegrymlSGg-----adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   46 VNSLQIDLTEGRYMLSGG-----ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cceeeeccccceEEeecC-----CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            44555555 478998877     89999999996543            1112223344667788889988 44455544


Q ss_pred             -cCCeEEEEeCCCCCCceeeeeecC-CeeEEEEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           68 -ATNEIQFFDTTDFPKGILYRLRVP-GVAAFEVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        68 -~~~~i~v~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                       .|.+++|||++....  ...+..+ .|.+-+|||-...  +||+     +.....|++.++.+   +..-..++.|...
T Consensus       121 SFDhtlKVWDtnTlQ~--a~~F~me~~VYshamSp~a~sHcLiA~-----gtr~~~VrLCDi~S---Gs~sH~LsGHr~~  190 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQE--AVDFKMEGKVYSHAMSPMAMSHCLIAA-----GTRDVQVRLCDIAS---GSFSHTLSGHRDG  190 (397)
T ss_pred             cccceEEEeeccccee--eEEeecCceeehhhcChhhhcceEEEE-----ecCCCcEEEEeccC---CcceeeeccccCc
Confidence             688999999988653  3344443 5888889986332  3443     23345899999998   8888899999999


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecc---eeEEEEeeCC-cceeee--ecCCCCCeEEEEECcCCCEEEEEEccC
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE---SKLNYLTTDG-THEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~---~~l~~l~~~~-~~~~~v--~l~~~~~i~~v~wspdg~~~av~~g~~  217 (434)
                      +..+.|+|...+++...  ..|...+.|.-.   ..+..++... .....+  ...+.+.|+.++|+.||.+++.  ...
T Consensus       191 vlaV~Wsp~~e~vLatg--saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gt  266 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATG--SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGT  266 (397)
T ss_pred             eEEEEeccCceeEEEec--CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccC
Confidence            99999999999886554  456666655321   1122222211 111111  1234788999999999999995  455


Q ss_pred             CCeEEEEecccc--eeEEeC-------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE
Q 013871          218 PASATIFNKKCR--PILELG-------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE  286 (434)
Q Consensus       218 ~~~v~l~d~~~~--~~~~~~-------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~  286 (434)
                      +.++++|+....  .+..++       .++-..+. +-+...++.--   .+|.|.++++-.+..|..+..|  .+.++.
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p---~~~~lall~~~sgs~ir~l~~h~k~i~c~~  342 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFP---NDGSLALLNLLEGSFVRRLSTHLKRINCAA  342 (397)
T ss_pred             ccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEe---cCCeEEEEEccCceEEEeeecccceeeEEe
Confidence            779999987522  222221       11112233 33333333333   2368999999999988888777  455578


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +-|+=+...++..      |+.|..|-.
T Consensus       343 ~~~~fq~~~tg~~------d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRPDFEQCFTGDM------NGNIYMWSP  364 (397)
T ss_pred             ecCchhhhhcccc------CCccccccc
Confidence            8899888888887      888888875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.9e-12  Score=125.05  Aligned_cols=230  Identities=9%  Similarity=-0.014  Sum_probs=140.6

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.+-|.+.... ..... ...+....|||++ ..+++|....++. ..|.++++.+   ++ ...+..+........|+
T Consensus       170 ~l~~~d~dg~~~-~~~~~-~~~~~~p~wSpDG-~~~i~y~s~~~~~-~~Iyv~dl~t---g~-~~~lt~~~g~~~~~~~S  241 (419)
T PRK04043        170 NIVLADYTLTYQ-KVIVK-GGLNIFPKWANKE-QTAFYYTSYGERK-PTLYKYNLYT---GK-KEKIASSQGMLVVSDVS  241 (419)
T ss_pred             eEEEECCCCCce-eEEcc-CCCeEeEEECCCC-CcEEEEEEccCCC-CEEEEEECCC---Cc-EEEEecCCCcEEeeEEC
Confidence            566655544322 11111 1245678999995 4333443332222 3788888865   32 33333345455567899


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.+++.+.....++- ..+......|+|||+.+++++..... .|.++|+.+.
T Consensus       242 PDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g  311 (419)
T PRK04043        242 KDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG  311 (419)
T ss_pred             CCCCEEEEEEccC---------CCcEEEEEECCCCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999998765331         34568998877764333332 12334567899999999987644322 7888888765


Q ss_pred             eeEEeC-CcCeeEEEECCCCCeEEEEecCCC------CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013871          230 PILELG-SGPYNTVRWNPKGKFLCLAGFGNL------PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       230 ~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~------~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~pr  302 (434)
                      ....+. .+..+ ..|||||++|+.......      ...|++.|+++++..............|||||++|+.++... 
T Consensus       312 ~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~-  389 (419)
T PRK04043        312 SVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLG-  389 (419)
T ss_pred             CeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccC-
Confidence            554442 22223 589999999988765421      147899999887543333332223489999999999887620 


Q ss_pred             eeeCCcEEEEeecCceeeee
Q 013871          303 LQIDNGIKIFHHNGSLFFKK  322 (434)
Q Consensus       303 l~~D~~i~iw~~~g~~~~~~  322 (434)
                        -...+.+.+++|...+..
T Consensus       390 --~~~~L~~~~l~g~~~~~l  407 (419)
T PRK04043        390 --NQSALGIIRLNYNKSFLF  407 (419)
T ss_pred             --CcEEEEEEecCCCeeEEe
Confidence              022366777788754443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.60  E-value=4.1e-13  Score=126.72  Aligned_cols=307  Identities=13%  Similarity=0.226  Sum_probs=197.8

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec------CCeEEEE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA------TNEIQFF   75 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~------~~~i~v~   75 (434)
                      -+.||-+.+|++-..      ...+.|+++ ++.. .....+.....++....|||-  +..||+-.      ...+++|
T Consensus       136 ~~k~s~~D~y~ARvv------~~sl~i~e~-t~n~-~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~  207 (561)
T COG5354         136 VLKFSIDDKYVARVV------GSSLYIHEI-TDNI-EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRIL  207 (561)
T ss_pred             eeeeeecchhhhhhc------cCeEEEEec-CCcc-ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEE
Confidence            567888888877543      356899986 4322 111111111155667788885  44556542      2489999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC---CC--CceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK---GS--PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~---~~--~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      .++.........+....-..+.|.+.++.++.......+   ..  ...+.|+++...   . +......+..+..+.|+
T Consensus       208 sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~---~-i~V~~~~~~pVhdf~W~  283 (561)
T COG5354         208 SIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER---S-IPVEKDLKDPVHDFTWE  283 (561)
T ss_pred             EccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc---c-cceeccccccceeeeec
Confidence            998544333333332222346888885544443333222   11  246778887642   2 22111346678899999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEeccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~~  228 (434)
                      |.++...++... .+.+         +-..++.+.-....+   ++.-+.+-|||.++++++ .|.  ..+.+.+||..+
T Consensus       284 p~S~~F~vi~g~-~pa~---------~s~~~lr~Nl~~~~P---e~~rNT~~fsp~~r~il~-agF~nl~gni~i~~~~~  349 (561)
T COG5354         284 PLSSRFAVISGY-MPAS---------VSVFDLRGNLRFYFP---EQKRNTIFFSPHERYILF-AGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             ccCCceeEEecc-cccc---------eeecccccceEEecC---CcccccccccCcccEEEE-ecCCccccceEEeccCC
Confidence            999988776421 1222         222222232111111   455577899999988886 355  335899999865


Q ss_pred             cee--EEeCCcCeeEEEECCCCCeEEEEecC---CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013871          229 RPI--LELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       229 ~~~--~~~~~~~~~~i~~SP~g~~l~~~~~~---~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl  303 (434)
                      +-.  ..+......-+.|||||+++.++..+   +.|..|.|||+...+..      ..+.+.|.|.|++..+.++.|++
T Consensus       350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h  423 (561)
T COG5354         350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKH  423 (561)
T ss_pred             ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------hhhhccccCCcccceeeccCCCC
Confidence            433  24444444557899999999886432   24668999998643222      44568999999999999999999


Q ss_pred             eeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013871          304 QIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       304 ~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+.++.++.+..|.+.-........+++|+|.++.+++.
T Consensus       424 ~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~  462 (561)
T COG5354         424 KVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTI  462 (561)
T ss_pred             ccccccccccccccccChhhhcccceeEEecCCCccCCh
Confidence            999999999999999988888899999999999999986

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=6.1e-13  Score=118.20  Aligned_cols=255  Identities=16%  Similarity=0.267  Sum_probs=160.4

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEE
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQ   73 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~   73 (434)
                      +|.++.|.+.|+.++|++     .|+.|+|||..+..    +......+..  ..| .+.|.+  =|+.+|++ .|.++.
T Consensus        15 lihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~--Si~-rV~WAhPEfGqvvA~cS~Drtv~   86 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDG--SIW-RVVWAHPEFGQVVATCSYDRTVS   86 (361)
T ss_pred             eeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCC--cEE-EEEecCccccceEEEEecCCcee
Confidence            578999999999999999     89999999964432    2334444432  556 889976  57899988 578999


Q ss_pred             EEeCCC--CCC-c-ee---eeee--cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeee------
Q 013871           74 FFDTTD--FPK-G-IL---YRLR--VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARR------  137 (434)
Q Consensus        74 v~~~~~--~~~-~-~~---~~~~--~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~------  137 (434)
                      ||+-..  .+. + .-   ..+.  -..|.++.|+|..- ..+|.     .+.+|.+|||+.++.   -.+.+.      
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRIYEA~dp---~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRIYEAPDP---MNLSQWTLQHEI  158 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEEEecCCc---cccccchhhhhh
Confidence            998632  111 0 11   1111  23699999999743 23332     356789999998762   222221      


Q ss_pred             -------eecccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeec-CCCCCeEEEEECc
Q 013871          138 -------SFFRCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL-RKEGPVHDVQWSY  205 (434)
Q Consensus       138 -------~~~~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l-~~~~~i~~v~wsp  205 (434)
                             ..+.....++.|++.-   ..|++....+....++.     .||-.+-.+.+- ..-.| ++..||++++|.|
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-----~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-----KIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccce-----EEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence                   1244556789999742   23444332222223332     244433333111 11112 4688999999999


Q ss_pred             C-CCE-EEEEEccCCCeEEEEeccc---------------------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871          206 S-GSE-FAVVYGFMPASATIFNKKC---------------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       206 d-g~~-~av~~g~~~~~v~l~d~~~---------------------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~  260 (434)
                      + |+. -.+..+..|| |+||.++.                     +.+.++  |.+.+-.+.|+=.|..|++.|   .|
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG---dD  309 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG---DD  309 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC---CC
Confidence            6 332 2222466677 99998752                     112223  778999999999999999988   77


Q ss_pred             CeEEEEEcc---CCEEEEEeeCC
Q 013871          261 GDMAFWDYV---DGKQLGTTRAE  280 (434)
Q Consensus       261 g~i~iwd~~---~~~~i~~~~~~  280 (434)
                      |.|++|-..   ..+++..+...
T Consensus       310 G~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  310 GCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             ceeeehhhhhhhhheeeeEEecc
Confidence            899999743   33666666654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.60  E-value=1.9e-13  Score=122.20  Aligned_cols=261  Identities=15%  Similarity=0.200  Sum_probs=162.2

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCC--Cc--------eeeeee---cCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013871           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFP--KG--------ILYRLR---VPGVAAFEVSKAP---GSHVAVFVPESKGS  116 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~--------~~~~~~---~~~v~~~~~sp~~---~~~ia~~~~~~~~~  116 (434)
                      ...|||||..|++. .++.+++|+++...  ..        ....++   .+-|.++.|-|--   .+.-.+|..  ...
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ssr  131 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SSR  131 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--ccc
Confidence            56899999988776 57899999986421  10        001111   1235555554310   111111211  123


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCcceeee
Q 013871          117 PASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLV  190 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~~~v  190 (434)
                      ..-|.+|+.-+   ++.-+....+.     ....++.|+|||..|...    ...+         |..+++ ..+..+.+
T Consensus       132 ~~PIh~wdaft---G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrc---------irvFdt~RpGr~c~v  195 (406)
T KOG2919|consen  132 DQPIHLWDAFT---GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRC---------IRVFDTSRPGRDCPV  195 (406)
T ss_pred             cCceeeeeccc---cccccchhhhhhHHhhhhheeEEecCCCCeEeec----ccce---------EEEeeccCCCCCCcc
Confidence            34578888766   44433333322     123578999999998653    1122         333333 11122222


Q ss_pred             --ecCC-----CCCeEEEEECcCCC-EEEEEEccCCCeEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          191 --PLRK-----EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       191 --~l~~-----~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                        ++.+     .+-|.+++|+|... .+++  |.-...+-||.- ...++..+  |.+.|+.++|.++|+.|.+|+.-  
T Consensus       196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk--  271 (406)
T KOG2919|consen  196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK--  271 (406)
T ss_pred             hhhhhcccccccceeeeeeccCCCCcceee--ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC--
Confidence              2222     57888999999654 5664  444557778765 34555555  68899999999999999988753  


Q ss_pred             CCeEEEEEccCC-EEEEEeeCC-----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC--c--eeeeeeccccee
Q 013871          260 PGDMAFWDYVDG-KQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--S--LFFKKMFDKLFQ  329 (434)
Q Consensus       260 ~g~i~iwd~~~~-~~i~~~~~~-----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g--~--~~~~~~~~~~~~  329 (434)
                      +-.|..||++.. ..+..+..|     .-+.+...|+|++|+++++      |+.|++||..+  .  .++....+.+..
T Consensus       272 ~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNg  345 (406)
T KOG2919|consen  272 DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNG  345 (406)
T ss_pred             CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC------CccEEEEecCCCCCcccccccccccccc
Confidence            468999999865 445555444     1233788999999999999      99999999965  3  334445567888


Q ss_pred             eEEEcCCCCCCCC
Q 013871          330 AEWKPVSPDKFGD  342 (434)
Q Consensus       330 ~~w~p~~~~~~~~  342 (434)
                      |+.+|--|.+...
T Consensus       346 vslnP~mpilats  358 (406)
T KOG2919|consen  346 VSLNPIMPILATS  358 (406)
T ss_pred             eecCcccceeeec
Confidence            8888875554443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=4.7e-14  Score=131.53  Aligned_cols=220  Identities=12%  Similarity=0.164  Sum_probs=145.7

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      .|.||+-+|+|.||+...     ..++|.+|.+.+|..+..+..+   -..++|+.||.||++|.+++ |+.|++|.+.+
T Consensus        83 ~v~al~s~n~G~~l~ag~-----i~g~lYlWelssG~LL~v~~aH---YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGT-----ISGNLYLWELSSGILLNVLSAH---YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             ceeeeecCCCceEEEeec-----ccCcEEEEEeccccHHHHHHhh---ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            378999999999999765     5689999999999988877443   27888999999999999985 67999999733


Q ss_pred             C-------CCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           80 F-------PKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~-------~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .       .....  ..-|.-.|+++...+++ +..+.     +.+.+..+++|++..   +..+.+..|          
T Consensus       155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~-----TaS~D~t~k~wdlS~---g~LLlti~f----------  216 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLY-----TASEDRTIKLWDLSL---GVLLLTITF----------  216 (476)
T ss_pred             ecccccCCCccceeeeccCcceeEEEEecCCCccceEE-----EecCCceEEEEEecc---ceeeEEEec----------
Confidence            1       11111  11223358888888874 22332     246678999999976   322222221          


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec---
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK---  226 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~---  226 (434)
                                                                   ..++++++..|-++.+.+  |..+++|.+.++   
T Consensus       217 ---------------------------------------------p~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~  249 (476)
T KOG0646|consen  217 ---------------------------------------------PSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKL  249 (476)
T ss_pred             ---------------------------------------------CCcceeEEEcccccEEEe--cCCcceEEeeehhcC
Confidence                                                         223444444444444442  444444444432   


Q ss_pred             --------------ccceeEEe--CCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEE
Q 013871          227 --------------KCRPILEL--GSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSE  286 (434)
Q Consensus       227 --------------~~~~~~~~--~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~  286 (434)
                                    ...++..+  |.+  .|+|+++|-||.+|++|+   .+|++.|||+.+.++++++..  ..++.+.
T Consensus       250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd---~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~  326 (476)
T KOG0646|consen  250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD---EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ  326 (476)
T ss_pred             CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC---CCCCEEEEecchHHHHHHHhhhccccceeE
Confidence                          11112222  444  899999999999999998   678999999999988877762  2455577


Q ss_pred             ECCCCCEEEE
Q 013871          287 WSPDGRYFMT  296 (434)
Q Consensus       287 wspdg~~l~t  296 (434)
                      +.|=-+-++.
T Consensus       327 i~~~~~~~~l  336 (476)
T KOG0646|consen  327 INPLERGIIL  336 (476)
T ss_pred             eeccccceec
Confidence            7554333333

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=1e-13  Score=123.45  Aligned_cols=274  Identities=12%  Similarity=0.161  Sum_probs=175.2

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC------CCCCCceeeeeecCCeeEE
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT------TDFPKGILYRLRVPGVAAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~------~~~~~~~~~~~~~~~v~~~   96 (434)
                      .|.+.+||.+++|.|+.+|.++-   ..+.++.|++.+.++++++ |++-+||..      +......  ....+  ...
T Consensus       168 ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~--~hSsE--eE~  240 (481)
T KOG0300|consen  168 ADHTARIWSLESGACLATYTGHT---GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS--DHSSE--EEE  240 (481)
T ss_pred             cccceeEEeeccccceeeecccc---cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC--CCCch--hhh
Confidence            78999999999999999998854   7888999999999999985 569999983      2211000  00000  000


Q ss_pred             EEeCCCCCeEEEEecCCCCCC-ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce
Q 013871           97 EVSKAPGSHVAVFVPESKGSP-ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES  175 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~-~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~  175 (434)
                      .-| +....-   ...+...+ -+|          .-++..++.|.+.+....|-..|+.++..   .-|.+-.      
T Consensus       241 e~s-De~~~d---~d~~~~sD~~ti----------RvPl~~ltgH~~vV~a~dWL~gg~Q~vTa---SWDRTAn------  297 (481)
T KOG0300|consen  241 EHS-DEHNRD---TDSSEKSDGHTI----------RVPLMRLTGHRAVVSACDWLAGGQQMVTA---SWDRTAN------  297 (481)
T ss_pred             hcc-cccccc---cccccccCCcee----------eeeeeeeeccccceEehhhhcCcceeeee---eccccce------
Confidence            001 000000   00000000 011          34566677788888888999988886432   2344443      


Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEeCCcCeeEEEECCCCCeE
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFL  251 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~~~~~~~~i~~SP~g~~l  251 (434)
                       ||.++  .+........++.....++-+|+-+.++  +.+.|.+.++||.+    ...+++-|...++++.|.-+.+. 
T Consensus       298 -lwDVE--tge~v~~LtGHd~ELtHcstHptQrLVv--TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-  371 (481)
T KOG0300|consen  298 -LWDVE--TGEVVNILTGHDSELTHCSTHPTQRLVV--TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-  371 (481)
T ss_pred             -eeeec--cCceeccccCcchhccccccCCcceEEE--EeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-
Confidence             44442  2211111223456677778788654444  67888999999997    22345558999999999987654 


Q ss_pred             EEEecCCCCCeEEEEEccCCE-EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee------
Q 013871          252 CLAGFGNLPGDMAFWDYVDGK-QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------  323 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~------  323 (434)
                      ++|+   .|.+|+|||+++++ .+.++... .+..++.|-.+..|+.-..      ...|+|||++|..+...+      
T Consensus       372 VSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqg  442 (481)
T KOG0300|consen  372 VSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQG  442 (481)
T ss_pred             eecC---CCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccC------CceEEEEecCCCccccCCcccccc
Confidence            4555   44699999999874 56666544 4445888887777777665      678999999998776553      


Q ss_pred             -cccceeeEEEcCCC--CCCCC
Q 013871          324 -FDKLFQAEWKPVSP--DKFGD  342 (434)
Q Consensus       324 -~~~~~~~~w~p~~~--~~~~~  342 (434)
                       ...+.+++|..+.+  .||.-
T Consensus       443 HrRMV~c~AW~eehp~cnLftc  464 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEHPACNLFTC  464 (481)
T ss_pred             cceeeeeeeccccCcccccccc
Confidence             23588999987665  34543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=7.6e-13  Score=128.68  Aligned_cols=310  Identities=15%  Similarity=0.132  Sum_probs=188.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--Cc----CCCCCCeeeecCCCcEEEEecCCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NM----TKTTWPSIRFSSDEAVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~----~~~~~~~~~~S~d~~~la~~~~~~i~v~   75 (434)
                      |.+|+|+|+|..|++++     .|+.|++||+.++..++.....  ..    ..-.| ++.|-.|+.+++.-+.|+|++|
T Consensus       157 vLslsw~~~~~~i~~Gs-----~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW-Sv~~Lrd~tI~sgDS~G~V~FW  230 (691)
T KOG2048|consen  157 VLSLSWNPTGTKIAGGS-----IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW-SVLFLRDSTIASGDSAGTVTFW  230 (691)
T ss_pred             EEEEEecCCccEEEecc-----cCceEEEEEcCCCceEEEeeecccccccCCceEEE-EEEEeecCcEEEecCCceEEEE
Confidence            67899999999999988     8999999999999887722211  10    11224 4555556655544467999999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC---ceeeeeecccceeEEEECCC
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ---PLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~---~i~~~~~~~~~~~~~~ws~~  152 (434)
                      |...+........+...|.+++.+++++..+.      .|.++.+..|.....  ..   ....+.+|..++.++.-.++
T Consensus       231 d~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs------aGvd~~ii~~~~~~~--~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  231 DSIFGTLIQSHSCHDADVLALAVADNEDRVFS------AGVDPKIIQYSLTTN--KSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             cccCcchhhhhhhhhcceeEEEEcCCCCeEEE------ccCCCceEEEEecCC--ccceeeeccccCCcccceeeeeecc
Confidence            99887776777788888999999988544332      355555555555431  11   12334455555555543332


Q ss_pred             -----CC-eEEEEEEecccc-------------cCceeecceeE-----------EEEeeC-------CcceeeeecCCC
Q 013871          153 -----ST-GLLAVAQSDVDK-------------TNQSYYGESKL-----------NYLTTD-------GTHEGLVPLRKE  195 (434)
Q Consensus       153 -----G~-~l~~~~~~~~d~-------------~~~~~~g~~~l-----------~~l~~~-------~~~~~~v~l~~~  195 (434)
                           |. ..+++.....++             ...+--++..|           |.+...       -.+-..+.+...
T Consensus       303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~  382 (691)
T KOG2048|consen  303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK  382 (691)
T ss_pred             eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence                 11 111111110000             00011112222           222111       011122334446


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE---e-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE---L-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~---~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      .-|.+.+.||+|+.+++-   +...++||.++......   .     .......+.|+-|+..+++.+.  ..+.+.+++
T Consensus       383 ~nIs~~aiSPdg~~Ia~s---t~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~e  457 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAIS---TVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFE  457 (691)
T ss_pred             cceeeeccCCCCCEEEEe---eccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEE
Confidence            678899999999999963   35588899876432111   1     2345677899999998887772  346888888


Q ss_pred             ccCC--EEEEEe----eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee---cccceeeEEEcCC
Q 013871          268 YVDG--KQLGTT----RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM---FDKLFQAEWKPVS  336 (434)
Q Consensus       268 ~~~~--~~i~~~----~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~---~~~~~~~~w~p~~  336 (434)
                      .++.  +.+..+    ..+.+..+.-||||+||+++++      ++.|.+|++.+...+...   .-.+..++++|..
T Consensus       458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t------~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~  529 (691)
T KOG2048|consen  458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST------RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFV  529 (691)
T ss_pred             ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec------cceEEEEEcccceeecchhccCcceeeeeccccc
Confidence            7754  333322    2235666999999999999999      999999999876443321   1345556666543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=6e-15  Score=143.94  Aligned_cols=249  Identities=10%  Similarity=0.143  Sum_probs=179.2

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeee
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~   88 (434)
                      -+-+++...     .+-.++|||.....+      +   ...+.++..-..++.+++++.. .+.+|....+......+.
T Consensus         3 ~~~~~m~~~-----~~t~Lr~~~~~~~~~------h---saav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~   68 (825)
T KOG0267|consen    3 GMEFLMKTK-----RATKLRVWDTREFVA------H---SAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTG   68 (825)
T ss_pred             cccccceee-----eeeccccccchhhhh------h---hhhhceeeeeccceeeccCCCceeeccccccCCchhheeec
Confidence            344455444     346788888643221      1   1333355555567778877654 666999877665455678


Q ss_pred             ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccC
Q 013871           89 RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTN  168 (434)
Q Consensus        89 ~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~  168 (434)
                      |...|.++.|++. ..+|+     .+...+.|++||+..   ...++++..|..+.+.+.|+|-|.+.   ++...|...
T Consensus        69 hespIeSl~f~~~-E~Lla-----agsasgtiK~wDlee---Ak~vrtLtgh~~~~~sv~f~P~~~~~---a~gStdtd~  136 (825)
T KOG0267|consen   69 HESPIESLTFDTS-ERLLA-----AGSASGTIKVWDLEE---AKIVRTLTGHLLNITSVDFHPYGEFF---ASGSTDTDL  136 (825)
T ss_pred             cCCcceeeecCcc-hhhhc-----ccccCCceeeeehhh---hhhhhhhhccccCcceeeeccceEEe---ccccccccc
Confidence            8889999999997 34443     245678999999998   78889999999999999999998875   323233333


Q ss_pred             ceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEE
Q 013871          169 QSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRW  244 (434)
Q Consensus       169 ~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~  244 (434)
                      +.|.+.       -.|   |..... +...+..+.|+|+|++++  .|..|..+.+||+. ++.+.+|  |.+.+..+.|
T Consensus       137 ~iwD~R-------k~G---c~~~~~s~~~vv~~l~lsP~Gr~v~--~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~  204 (825)
T KOG0267|consen  137 KIWDIR-------KKG---CSHTYKSHTRVVDVLRLSPDGRWVA--SGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEF  204 (825)
T ss_pred             eehhhh-------ccC---ceeeecCCcceeEEEeecCCCceee--ccCCcceeeeeccccccccccccccccccccccc
Confidence            333222       111   111111 256788899999999999  58889999999995 5555566  7889999999


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      +|..-+++.|+   .++++.|||+++.+.|......  .+....|+|||+.++++..
T Consensus       205 hp~e~Lla~Gs---~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q  258 (825)
T KOG0267|consen  205 HPLEVLLAPGS---SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQ  258 (825)
T ss_pred             CchhhhhccCC---CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCch
Confidence            99988888888   6679999999999998876554  6667999999999988764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.2e-12  Score=130.40  Aligned_cols=244  Identities=13%  Similarity=0.103  Sum_probs=150.5

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.++|...... .....+...+....|||+ +..|++...+.  ....|.+|++.+   +.. .....+......+.|+
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpD-G~~la~~s~~~--~~~~l~~~~l~~---g~~-~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPD-GKRIAYVSFEQ--KRPRIFVQNLDT---GRR-EQITNFEGLNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCC-CCEEEEEEcCC--CCCEEEEEECCC---CCE-EEccCCCCCcCCeEEC
Confidence            577777765332 222223345788999999 56665543332  234788888865   322 2233333344568999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~  229 (434)
                      |||+.|++..+.+         |...||.++..+.....+. ...+......|+|||+.+++.+... ...|.++|+.+.
T Consensus       252 pDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g  321 (430)
T PRK00178        252 PDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG  321 (430)
T ss_pred             CCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999988764322         2345888887765433322 2234556789999999998764321 236777787654


Q ss_pred             eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      ....+  .........|||||++|+.....+....|.++|+.+++..............|||||++|+.++....   ..
T Consensus       322 ~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g---~~  398 (430)
T PRK00178        322 RAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQG---RG  398 (430)
T ss_pred             CEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCC---ce
Confidence            44333  22233457899999999887754333468999998875433333222234799999999998886210   12


Q ss_pred             cEEEEeecCceeeee--ecccceeeEEEcC
Q 013871          308 GIKIFHHNGSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       308 ~i~iw~~~g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      .+.+++.+|......  ...++....|+|.
T Consensus       399 ~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~  428 (430)
T PRK00178        399 VLMLVSINGRVRLPLPTAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence            467777788755433  2245677777764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.59  E-value=3.9e-13  Score=130.92  Aligned_cols=287  Identities=14%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~   79 (434)
                      |+.++|+|.|.||++.+     .|.+-+|+--- ....-+.+...+.|.....|++|-+....++++.+ .-+++|+.+.
T Consensus       364 V~dv~W~psGeflLsvs-----~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk  438 (764)
T KOG1063|consen  364 VKDVDWDPSGEFLLSVS-----LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK  438 (764)
T ss_pred             ceeeeecCCCCEEEEec-----cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence            67899999999999999     88888888643 11223344434445566778888875555555655 5788888521


Q ss_pred             -------------C-CC--------cee--------e-------------------------------------------
Q 013871           80 -------------F-PK--------GIL--------Y-------------------------------------------   86 (434)
Q Consensus        80 -------------~-~~--------~~~--------~-------------------------------------------   86 (434)
                                   + +.        ...        .                                           
T Consensus       439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv  518 (764)
T KOG1063|consen  439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV  518 (764)
T ss_pred             HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence                         0 00        000        0                                           


Q ss_pred             ---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871           87 ---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        87 ---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                         ..|.-.|.+++.+|+ ++.+|.....+.-.-+.|+||+..+   =..+..+.+|.-.+..+.|||||++|+...   
T Consensus       519 ~KLYGHGyEv~~l~~s~~-gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs---  591 (764)
T KOG1063|consen  519 HKLYGHGYEVYALAISPT-GNLIASACKSSLKEHAVIRLWNTAN---WLQVQELEGHSLTVTRLAFSPDGRYLLSVS---  591 (764)
T ss_pred             HHhccCceeEEEEEecCC-CCEEeehhhhCCccceEEEEEeccc---hhhhheecccceEEEEEEECCCCcEEEEee---
Confidence               001113666777776 5666655444444557899999988   445557888999999999999999986542   


Q ss_pred             ccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEe----CC
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL----GS  236 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~----~~  236 (434)
                      .|.+...|.-..++     .....-...-.|..-|.+..|+|++.+|+  +++.|.+|.+|.....   .+..+    ..
T Consensus       592 RDRt~sl~~~~~~~-----~~e~~fa~~k~HtRIIWdcsW~pde~~Fa--TaSRDK~VkVW~~~~~~d~~i~~~a~~~~~  664 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDI-----KDEFRFACLKAHTRIIWDCSWSPDEKYFA--TASRDKKVKVWEEPDLRDKYISRFACLKFS  664 (764)
T ss_pred             cCceEEeeeeeccc-----chhhhhccccccceEEEEcccCcccceeE--EecCCceEEEEeccCchhhhhhhhchhccC
Confidence            56665543211110     01000000112356788999999999988  7889999999966422   22221    46


Q ss_pred             cCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccC-------C--EEEEEeeC---C--CceEEEECCC--------
Q 013871          237 GPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVD-------G--KQLGTTRA---E--CSVTSEWSPD--------  290 (434)
Q Consensus       237 ~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~-------~--~~i~~~~~---~--~~~~~~wspd--------  290 (434)
                      ..++.++|.|--    ..++..|..  .|.|.+|....       +  ........   +  .+..+.|+|.        
T Consensus       665 ~aVTAv~~~~~~~~e~~~~vavGle--~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~  742 (764)
T KOG1063|consen  665 LAVTAVAYLPVDHNEKGDVVAVGLE--KGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVED  742 (764)
T ss_pred             CceeeEEeeccccccccceEEEEec--ccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccc
Confidence            788999987732    235566654  49999998551       1  11111111   1  4455999976        


Q ss_pred             --CCEEEEEEcCCceeeCCcEEEEeec
Q 013871          291 --GRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       291 --g~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                        ...|++|+.      |..+||++++
T Consensus       743 ~~~l~la~~g~------D~~vri~nv~  763 (764)
T KOG1063|consen  743 KEWLNLAVGGD------DESVRIFNVD  763 (764)
T ss_pred             cceeEEeeecc------cceeEEeecc
Confidence              346799999      9999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=1.6e-12  Score=126.54  Aligned_cols=267  Identities=11%  Similarity=0.121  Sum_probs=174.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+|+||.+.+.||...     .|++|-||++..+=....+.... ....+..++|++.++++-.+.+++|..||+.+..
T Consensus        28 I~slA~s~kS~~lAvsR-----t~g~IEiwN~~~~w~~~~vi~g~-~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSR-----TDGNIEIWNLSNNWFLEPVIHGP-EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eEEEEEeccCCceeeec-----cCCcEEEEccCCCceeeEEEecC-CCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence            78999999999999876     89999999998875444333221 2256778999999999988899999999998865


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCCCCeEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~G~~l~~~  159 (434)
                      ...........|.+++.+|. ...+++-     ..+|.+..++...   +.....+.+.  +..+.++.|+|+|..|+..
T Consensus       102 ~~~~~d~~gg~IWsiai~p~-~~~l~Ig-----cddGvl~~~s~~p---~~I~~~r~l~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPE-NTILAIG-----CDDGVLYDFSIGP---DKITYKRSLMRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             eeEEecCCCcceeEEEeCCc-cceEEee-----cCCceEEEEecCC---ceEEEEeecccccceEEEEEecCCccEEEec
Confidence            43333344456889999997 4555542     2345555555544   3333333332  4567899999999987553


Q ss_pred             EEecccccCceeecce--eEEEEe--eCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eE
Q 013871          160 AQSDVDKTNQSYYGES--KLNYLT--TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---IL  232 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~--~l~~l~--~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~  232 (434)
                      +   .|..++.|.+..  .++.+.  +.+...     ..+.-|.++.+-.++ .++  +|+.-|.|++||.....   -+
T Consensus       173 s---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k-----~~~~iVWSv~~Lrd~-tI~--sgDS~G~V~FWd~~~gTLiqS~  241 (691)
T KOG2048|consen  173 S---IDGVIRIWDVKSGQTLHIITMQLDRLSK-----REPTIVWSVLFLRDS-TIA--SGDSAGTVTFWDSIFGTLIQSH  241 (691)
T ss_pred             c---cCceEEEEEcCCCceEEEeeeccccccc-----CCceEEEEEEEeecC-cEE--EecCCceEEEEcccCcchhhhh
Confidence            2   455455554332  233221  111110     013346677776665 333  58888999999986433   23


Q ss_pred             EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE----E--EEeeCCCceEEEECCCCCEEEEEEc
Q 013871          233 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ----L--GTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       233 ~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~----i--~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      ..|...+.+++-++++..+.++|   .|+.|.-+-..+.+.    .  ..+..|++-.++..++  .|++|+.
T Consensus       242 ~~h~adVl~Lav~~~~d~vfsaG---vd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~  309 (691)
T KOG2048|consen  242 SCHDADVLALAVADNEDRVFSAG---VDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGR  309 (691)
T ss_pred             hhhhcceeEEEEcCCCCeEEEcc---CCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecce
Confidence            45899999999999999999999   667888777665422    1  1223345555666555  4455444

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.58  E-value=8e-13  Score=128.79  Aligned_cols=262  Identities=10%  Similarity=0.114  Sum_probs=183.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCe-eeecC--CCcEEEEecCCeEEEEeC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPS-IRFSS--DEAVACRMATNEIQFFDT   77 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~-~~~S~--d~~~la~~~~~~i~v~~~   77 (434)
                      +.+++-+ +..+++.+     .|++++||+-..++.+.  .|.++.   .-+.+ ++|-+  .++++..+.|..|.+|..
T Consensus        18 r~v~~~~-~~~i~s~s-----Rd~t~~vw~~~~~~~l~~~~~~~~~---g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   18 RAVAVTD-GVCIISGS-----RDGTVKVWAKKGKQYLETHAFEGPK---GFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             heeEecC-CeEEeecC-----CCCceeeeeccCcccccceecccCc---ceeeccceeccccCcceEeecccceEEEEec
Confidence            3444444 33455555     68999999976655544  233221   22222 45543  334555556789999999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      .........+.|...|.+++.--+  ..+.     ++..+.++++|..     ++.......|.+.+-.+..-|++++  
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~--~~~i-----SgSWD~TakvW~~-----~~l~~~l~gH~asVWAv~~l~e~~~--  154 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGED--GTLI-----SGSWDSTAKVWRI-----GELVYSLQGHTASVWAVASLPENTY--  154 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCc--CceE-----ecccccceEEecc-----hhhhcccCCcchheeeeeecCCCcE--
Confidence            987766677778777877654433  2222     3567789999998     4555567788888888887788753  


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--C
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G  235 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~  235 (434)
                        .+...|++.+.|.|...+..+   .+        |...|..++.-|++ .|+  +++.|+.|++|++.++.+...  |
T Consensus       155 --vTgsaDKtIklWk~~~~l~tf---~g--------HtD~VRgL~vl~~~-~fl--ScsNDg~Ir~w~~~ge~l~~~~gh  218 (745)
T KOG0301|consen  155 --VTGSADKTIKLWKGGTLLKTF---SG--------HTDCVRGLAVLDDS-HFL--SCSNDGSIRLWDLDGEVLLEMHGH  218 (745)
T ss_pred             --EeccCcceeeeccCCchhhhh---cc--------chhheeeeEEecCC-CeE--eecCCceEEEEeccCceeeeeecc
Confidence              234478999988775543322   22        37889999998765 455  467899999999998888877  6


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      +..+.++...+++..++++|   .|++++||+..  ++...+..+  +++++..-++|. |++|++      ||-||||.
T Consensus       219 tn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT  286 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFT  286 (745)
T ss_pred             ceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEecc------CceEEEEE
Confidence            78888999888899999998   77899999987  566655555  555566666776 567777      99999998


Q ss_pred             ec
Q 013871          314 HN  315 (434)
Q Consensus       314 ~~  315 (434)
                      ..
T Consensus       287 ~~  288 (745)
T KOG0301|consen  287 VD  288 (745)
T ss_pred             ec
Confidence            75

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.58  E-value=3.4e-13  Score=135.00  Aligned_cols=246  Identities=14%  Similarity=0.165  Sum_probs=172.5

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+.+|. ++.++....+.+|++|+..+...... ...|..+|..+++.-. +..+.     ++..+.++++|++.+ 
T Consensus       209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lv-----sgS~D~t~rvWd~~s-  280 (537)
T KOG0274|consen  209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLV-----SGSTDKTERVWDCST-  280 (537)
T ss_pred             chhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEE-----EEecCCcEEeEecCC-
Confidence            555688888 55555555678999999887544333 5567788999988864 33332     234567999999888 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~  208 (434)
                        ++.+.....|...+..+...+   .++  .+...|.+.+.|.-++. ..+.+.++        +.++|+++..+  +.
T Consensus       281 --g~C~~~l~gh~stv~~~~~~~---~~~--~sgs~D~tVkVW~v~n~-~~l~l~~~--------h~~~V~~v~~~--~~  342 (537)
T KOG0274|consen  281 --GECTHSLQGHTSSVRCLTIDP---FLL--VSGSRDNTVKVWDVTNG-ACLNLLRG--------HTGPVNCVQLD--EP  342 (537)
T ss_pred             --CcEEEEecCCCceEEEEEccC---ceE--eeccCCceEEEEeccCc-ceEEEecc--------ccccEEEEEec--CC
Confidence              888888887776666664322   222  22335666665533211 12222221        58999999997  55


Q ss_pred             EEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceE
Q 013871          209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVT  284 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~  284 (434)
                      .++  +|..|+.|.+||.. .+.++++  |.+.|.++.+.+. ..++.|+   +|+.|++||+.+. +++.++.+|..+.
T Consensus       343 ~lv--sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~c~~tl~~h~~~v  416 (537)
T KOG0274|consen  343 LLV--SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRKCIHTLQGHTSLV  416 (537)
T ss_pred             EEE--EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhhhhhhhcCCcccc
Confidence            555  68889999999996 4455555  8899999988776 8888888   6679999999999 9999999986666


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---ccceeeEEE
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---DKLFQAEWK  333 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~---~~~~~~~w~  333 (434)
                      -.....+++|++++.      |+.|++||. +|+++....-   ..+..+.+.
T Consensus       417 ~~l~~~~~~Lvs~~a------D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~  463 (537)
T KOG0274|consen  417 SSLLLRDNFLVSSSA------DGTIKLWDAEEGECLRTLEGRHVGGVSALALG  463 (537)
T ss_pred             cccccccceeEeccc------cccEEEeecccCceeeeeccCCcccEEEeecC
Confidence            666778899999999      999999998 4555555433   334444444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=2.3e-12  Score=128.44  Aligned_cols=238  Identities=13%  Similarity=0.121  Sum_probs=145.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C--CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T--NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~--~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s   99 (434)
                      ..|.++|..... .+.+....   ..+..+.|||||+.|+...  +  ..|.+||+.....   ..+. .. ....+.||
T Consensus       198 ~~l~i~d~dG~~-~~~l~~~~---~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---~~lt~~~g~~~~~~wS  270 (448)
T PRK04792        198 YQLMIADYDGYN-EQMLLRSP---EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---EKVTSFPGINGAPRFS  270 (448)
T ss_pred             eEEEEEeCCCCC-ceEeecCC---CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---EEecCCCCCcCCeeEC
Confidence            468888865443 34443332   4555789999999998863  2  2688888866432   1222 22 23578999


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      |+ +..+++.....  ....|.++++.+   + .+..++.+........|+|||+.|++....    .     +...||.
T Consensus       271 PD-G~~La~~~~~~--g~~~Iy~~dl~t---g-~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~----~-----g~~~Iy~  334 (448)
T PRK04792        271 PD-GKKLALVLSKD--GQPEIYVVDIAT---K-ALTRITRHRAIDTEPSWHPDGKSLIFTSER----G-----GKPQIYR  334 (448)
T ss_pred             CC-CCEEEEEEeCC--CCeEEEEEECCC---C-CeEECccCCCCccceEECCCCCEEEEEECC----C-----CCceEEE
Confidence            99 55555433221  224566677654   2 334444444455678999999998775321    1     2346888


Q ss_pred             EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeCCc-CeeEEEECCCCCeEEEEec
Q 013871          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGSG-PYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~~l~~~~~  256 (434)
                      ++..++....++.. .......+|+|||+.+++.... .+  .|.++|+.+.....+... ......|+|||++|+....
T Consensus       335 ~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        335 VNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEe
Confidence            88776544444432 2223457999999999875432 33  566678876555444322 2234689999999988775


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871          257 GNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ....+.++++|.+ ++....+..  ......+|||
T Consensus       413 ~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        413 YQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence            4434568888875 433433333  2445588987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.57  E-value=2.6e-13  Score=133.65  Aligned_cols=269  Identities=13%  Similarity=0.145  Sum_probs=168.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEe
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~   76 (434)
                      .+|+.-++-+.|+.+++      ..++|+.+...    .+...+..+..--.....+.|.. ++++||++. ++.|.+||
T Consensus        43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd  116 (839)
T KOG0269|consen   43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD  116 (839)
T ss_pred             ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence            35666677777777663      34556654321    22222211110001122456765 678999885 57999999


Q ss_pred             CCCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           77 TTDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        77 ~~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      ++.+..   .....-|...+..+.|++....++.     ++++++.|++||+..   .....+.......+..+.|+|.-
T Consensus       117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili-----SGSQDg~vK~~DlR~---~~S~~t~~~nSESiRDV~fsp~~  188 (839)
T KOG0269|consen  117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI-----SGSQDGTVKCWDLRS---KKSKSTFRSNSESIRDVKFSPGY  188 (839)
T ss_pred             cCccccchhhhHhhhhccceeeeeeccCCccEEE-----ecCCCceEEEEeeec---ccccccccccchhhhceeeccCC
Confidence            987421   1234455667999999998444443     578999999999976   33333322233456678899854


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---c
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~  229 (434)
                      ....+.+   .| .     |...+|.+  ..-..+.+.+ .+.|+|.++.|+|++.++|  +|+.|+.|+|||+.+   +
T Consensus       189 ~~~F~s~---~d-s-----G~lqlWDl--Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lA--TGGRDK~vkiWd~t~~~~~  255 (839)
T KOG0269|consen  189 GNKFASI---HD-S-----GYLQLWDL--RQPDRCEKKLTAHNGPVLCLNWHPNREWLA--TGGRDKMVKIWDMTDSRAK  255 (839)
T ss_pred             CceEEEe---cC-C-----ceEEEeec--cCchhHHHHhhcccCceEEEeecCCCceee--ecCCCccEEEEeccCCCcc
Confidence            4332221   11 1     32234444  3322333333 3689999999999998998  788999999999863   4


Q ss_pred             eeEEe-CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--CceEEEECC-CCCEEEEEEc
Q 013871          230 PILEL-GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSP-DGRYFMTATT  299 (434)
Q Consensus       230 ~~~~~-~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~~~~~wsp-dg~~l~tas~  299 (434)
                      .++.+ ...+++.+.|-|.-. +|++++.. .+..|+|||+.. +-...++..|  .++.++|.. |-..|.+++.
T Consensus       256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv-~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK  330 (839)
T KOG0269|consen  256 PKHTINTIAPVGRVKWRPARSYHLATCSMV-VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK  330 (839)
T ss_pred             ceeEEeecceeeeeeeccCccchhhhhhcc-ccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence            45555 367899999999887 56665543 467899999874 3556667666  344489965 4555666666

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.56  E-value=6.2e-13  Score=123.86  Aligned_cols=267  Identities=15%  Similarity=0.185  Sum_probs=173.3

Q ss_pred             CCCCeeeecCCCc--EEEEec-CCeEEEEeCCC--C--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE
Q 013871           50 TTWPSIRFSSDEA--VACRMA-TNEIQFFDTTD--F--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI  122 (434)
Q Consensus        50 ~~~~~~~~S~d~~--~la~~~-~~~i~v~~~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i  122 (434)
                      ..+.+++|.|...  ++|.+. .|+|-+||...  .  ........|...|.++.|+|.+...|..     ...+|++++
T Consensus       187 ~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-----sSyDGtiR~  261 (498)
T KOG4328|consen  187 RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-----SSYDGTIRL  261 (498)
T ss_pred             cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-----eccCceeee
Confidence            5566999999664  555553 47999999842  1  1223334455569999999986444431     355688999


Q ss_pred             EEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE
Q 013871          123 YACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       123 ~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~  202 (434)
                      .++.... ...+.+..--....+.+.++.+...+++..          -+|..+++.+.+.+..-....+. +..|.+++
T Consensus       262 ~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~----------~~G~f~~iD~R~~~s~~~~~~lh-~kKI~sv~  329 (498)
T KOG4328|consen  262 QDFEGNI-SEEVLSLDTDNIWFSSLDFSAESRSVLFGD----------NVGNFNVIDLRTDGSEYENLRLH-KKKITSVA  329 (498)
T ss_pred             eeecchh-hHHHhhcCccceeeeeccccCCCccEEEee----------cccceEEEEeecCCccchhhhhh-hcccceee
Confidence            9987532 222222211122223444555555544431          12444566666655422223333 45899999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEecc---cce---eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CC
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKK---CRP---ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DG  271 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~---~~~---~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----~~  271 (434)
                      ++|-..++.. +++.|.+++|||++   .+.   +.++ |...|++.+|||.|-.|++.+.|+   .|+|||..    .-
T Consensus       330 ~NP~~p~~la-T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~dss~~sa~~  405 (498)
T KOG4328|consen  330 LNPVCPWFLA-TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVFDSSCISAKD  405 (498)
T ss_pred             cCCCCchhee-ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEeecccccccC
Confidence            9998887776 67789999999986   222   3444 789999999999988888888665   99999984    33


Q ss_pred             EEEEEeeCCC-----c--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeecccc----eeeEEEcCCCCC
Q 013871          272 KQLGTTRAEC-----S--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMFDKL----FQAEWKPVSPDK  339 (434)
Q Consensus       272 ~~i~~~~~~~-----~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~~~~~~~----~~~~w~p~~~~~  339 (434)
                      +...++.+.+     .  .-.+|.||-.+|+++-.      -..|-|+|-+|+. +.+.+.++.    .-..|+|....+
T Consensus       406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~------~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~  479 (498)
T KOG4328|consen  406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY------PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTL  479 (498)
T ss_pred             CccceeeccCcccccccchhheeCCCccEEEEecc------CcceeEEcCCCCEEeeeccCccccccccceeecccccce
Confidence            4444444432     1  22799999999999887      6679999998775 555444433    345699998777


Q ss_pred             CCCc
Q 013871          340 FGDI  343 (434)
Q Consensus       340 ~~~~  343 (434)
                      +...
T Consensus       480 ~aG~  483 (498)
T KOG4328|consen  480 AAGG  483 (498)
T ss_pred             eccC
Confidence            7654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.5e-12  Score=126.31  Aligned_cols=239  Identities=13%  Similarity=0.095  Sum_probs=146.4

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeee-cC-CeeEEEEe
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLR-VP-GVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~-~~-~v~~~~~s   99 (434)
                      ..|.++|...+. .+.+....   ..+..+.|||||+.|++...    ..|.+|++.....   ..+. .. .+..+.||
T Consensus       179 ~~l~~~d~~g~~-~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l~~~~g~~~~~~~S  251 (430)
T PRK00178        179 YTLQRSDYDGAR-AVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQITNFEGLNGAPAWS  251 (430)
T ss_pred             eEEEEECCCCCC-ceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEccCCCCCcCCeEEC
Confidence            358888876544 34443332   34448899999999988642    3789999876432   1221 22 34468999


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      |+ +..+++.....  ....|.++++.+   + ....++..........|+|||+.|++....    .     |...||.
T Consensus       252 pD-G~~la~~~~~~--g~~~Iy~~d~~~---~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~----~-----g~~~iy~  315 (430)
T PRK00178        252 PD-GSKLAFVLSKD--GNPEIYVMDLAS---R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDR----G-----GKPQIYK  315 (430)
T ss_pred             CC-CCEEEEEEccC--CCceEEEEECCC---C-CeEEcccCCCCcCCeEECCCCCEEEEEECC----C-----CCceEEE
Confidence            99 45555433221  224677778765   2 233344444455678999999998875321    1     2335788


Q ss_pred             EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEeCC-cCeeEEEECCCCCeEEEEecC
Q 013871          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILELGS-GPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~~~-~~~~~i~~SP~g~~l~~~~~~  257 (434)
                      +++.++....+... ........|+|||+.+++..... ...+.++|+.+.....+.. .......|||||++|+.+...
T Consensus       316 ~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        316 VNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             EECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec
Confidence            87766544444432 22334678999999999764322 1268888987655554432 223357899999999888754


Q ss_pred             CCCCeEEEEEccCCEEEEEeeC--CCceEEEECC
Q 013871          258 NLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSP  289 (434)
Q Consensus       258 ~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wsp  289 (434)
                      ...+.|++++...... ..+..  ..+...+|||
T Consensus       395 ~g~~~l~~~~~~g~~~-~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        395 QGRGVLMLVSINGRVR-LPLPTAQGEVREPSWSP  427 (430)
T ss_pred             CCceEEEEEECCCCce-EECcCCCCCcCCCccCC
Confidence            4446788888865433 22222  2344578887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.55  E-value=7.8e-12  Score=120.78  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=152.4

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      .+.|||||+||.+.+     .|+.|.++|+.+++.+.++....   .. ..+++|+||++++.+  ..+++.++|..+.+
T Consensus        41 ~~~~s~Dgr~~yv~~-----rdg~vsviD~~~~~~v~~i~~G~---~~-~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   41 GLKFSPDGRYLYVAN-----RDGTVSVIDLATGKVVATIKVGG---NP-RGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             EEE-TT-SSEEEEEE-----TTSEEEEEETTSSSEEEEEE-SS---EE-EEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             EEEecCCCCEEEEEc-----CCCeEEEEECCcccEEEEEecCC---Cc-ceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence            367999999999988     67899999999999999987653   22 378999999999877  46899999998865


Q ss_pred             Cceeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCC
Q 013871           82 KGILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGS  153 (434)
Q Consensus        82 ~~~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G  153 (434)
                      ........       ..++..+.-+|.....+ +-.-+    .+.|.+.++..   ...+..... ....-....|+|+|
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV-v~lkd----~~~I~vVdy~d---~~~~~~~~i~~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFV-VNLKD----TGEIWVVDYSD---PKNLKVTTIKVGRFPHDGGFDPDG  183 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEE-EEETT----TTEEEEEETTT---SSCEEEEEEE--TTEEEEEE-TTS
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEE-EEEcc----CCeEEEEEecc---ccccceeeecccccccccccCccc
Confidence            43222111       12456666677633233 22222    24666667655   233322221 11223467899999


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecC---CCCCeE-------EEEECcC--CCEEEEEEccCCCe
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR---KEGPVH-------DVQWSYS--GSEFAVVYGFMPAS  220 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~---~~~~i~-------~v~wspd--g~~~av~~g~~~~~  220 (434)
                      +++++.+.. .+          .+-.++....... .+...   +.+++.       ...|.-.  +.......|..  .
T Consensus       184 ry~~va~~~-sn----------~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~--~  250 (369)
T PF02239_consen  184 RYFLVAANG-SN----------KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD--P  250 (369)
T ss_dssp             SEEEEEEGG-GT----------EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE----T
T ss_pred             ceeeecccc-cc----------eeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC--c
Confidence            998764322 11          1222222221110 01110   122222       1223322  22221222332  3


Q ss_pred             EEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC-CC--ceEEEECCCCCE
Q 013871          221 ATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA-EC--SVTSEWSPDGRY  293 (434)
Q Consensus       221 v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~-~~--~~~~~wspdg~~  293 (434)
                      +.++|.. .+.+.++  ..++ ..+.-+|+++++.+..+ +...+.|.++|.++.+.+..+.. ..  +.+++|++||++
T Consensus       251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence            4456653 4455555  3334 77889999999999822 22357999999999988877743 23  888999999999


Q ss_pred             EEEEEcCCceeeCC-cEEEEeec-Cceeeee
Q 013871          294 FMTATTAPRLQIDN-GIKIFHHN-GSLFFKK  322 (434)
Q Consensus       294 l~tas~~prl~~D~-~i~iw~~~-g~~~~~~  322 (434)
                      +..+.-.     .+ .|.|+|-. .+++...
T Consensus       330 v~vS~~~-----~~~~i~v~D~~Tl~~~~~i  355 (369)
T PF02239_consen  330 VWVSVWD-----GNGAIVVYDAKTLKEKKRI  355 (369)
T ss_dssp             EEEEEE-------TTEEEEEETTTTEEEEEE
T ss_pred             EEEEEec-----CCCEEEEEECCCcEEEEEE
Confidence            8887763     33 69999874 3444433

...

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=6.1e-12  Score=114.55  Aligned_cols=230  Identities=15%  Similarity=0.244  Sum_probs=160.5

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013871           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP  133 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~  133 (434)
                      .+.|..|...|+.+..+-.++|+...+++..........|...-||..   ++|+...   .++..++++++..   ...
T Consensus        10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS---LvaiV~~---~qpr~Lkv~~~Kk---~~~   80 (391)
T KOG2110|consen   10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS---LVAIVSI---KQPRKLKVVHFKK---KTT   80 (391)
T ss_pred             eeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccc---eeEEEec---CCCceEEEEEccc---Cce
Confidence            556888999999898888999998886652211222223556667754   3444322   4567889999876   677


Q ss_pred             eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----CCCCeEEEEECcCCCE
Q 013871          134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----KEGPVHDVQWSYSGSE  209 (434)
Q Consensus       134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----~~~~i~~v~wspdg~~  209 (434)
                      |+... |...+..++.|.  ++|+++...             .+|..++... ...-+++    +...+.++..++.+.+
T Consensus        81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-------------~IyIydI~~M-klLhTI~t~~~n~~gl~AlS~n~~n~y  143 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-------------SIYIYDIKDM-KLLHTIETTPPNPKGLCALSPNNANCY  143 (391)
T ss_pred             EEEEe-cCCceEEEEEcc--ceEEEEEcc-------------cEEEEecccc-eeehhhhccCCCccceEeeccCCCCce
Confidence            77765 455788888876  456555321             1444444332 1111111    2344566666666779


Q ss_pred             EEEEEccCCCeEEEEecc-cceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----C
Q 013871          210 FAVVYGFMPASATIFNKK-CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----C  281 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~-~~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~  281 (434)
                      +|+-.....+.|.|||+. ..++..  .|.+++-+++|||+|.+||+|+   ..| .|+|+.+.+|..+..+.-.    .
T Consensus       144 lAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~v~~G~kl~eFRRG~~~~~  220 (391)
T KOG2110|consen  144 LAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFSVPEGQKLYEFRRGTYPVS  220 (391)
T ss_pred             EEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEEcCCccEeeeeeCCceeeE
Confidence            997655567899999984 344433  4999999999999999999998   445 5799999999999888764    4


Q ss_pred             ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          282 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       282 ~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      +..++||||+++|++++.      -.+|+||.++...
T Consensus       221 IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  221 IYSLSFSPDSQFLAASSN------TETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence            445999999999998888      8999999997665

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.55  E-value=6.7e-12  Score=124.57  Aligned_cols=230  Identities=16%  Similarity=0.189  Sum_probs=142.6

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      .|.++|...... .........+....|||+ +..+++.....  ....|.+|++.+   +.. .....+......+.|+
T Consensus       171 ~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spd-g~~la~~~~~~--~~~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~s  242 (417)
T TIGR02800       171 ELQVADYDGANP-QTITRSREPILSPAWSPD-GQKLAYVSFES--GKPEIYVQDLAT---GQR-EKVASFPGMNGAPAFS  242 (417)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceecccCCCC-CCEEEEEEcCC--CCcEEEEEECCC---CCE-EEeecCCCCccceEEC
Confidence            688888754322 222222234778899999 56666543322  235789999876   332 2233344445568999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCR  229 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~  229 (434)
                      |||+.|++..+.+         +...||.++..+.....+. ...+.....+|+|||+++++.+... ...|.++|+.+.
T Consensus       243 pDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       243 PDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             CCCCEEEEEECCC---------CCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            9999987753221         2335777777655333332 2234455789999999998754321 226888888755


Q ss_pred             eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          230 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      ....+  +......+.|||+|++|+.+..+.....|.+||+.++...............|+|||++|+.++....   ..
T Consensus       313 ~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~---~~  389 (417)
T TIGR02800       313 EVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGG---RG  389 (417)
T ss_pred             CEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCC---cE
Confidence            44433  44556678999999999988754333489999998764433332223344799999999999887210   12


Q ss_pred             cEEEEeecCceeee
Q 013871          308 GIKIFHHNGSLFFK  321 (434)
Q Consensus       308 ~i~iw~~~g~~~~~  321 (434)
                      .+.+.+.+|.....
T Consensus       390 ~l~~~~~~g~~~~~  403 (417)
T TIGR02800       390 VLGLVSTDGRFRAR  403 (417)
T ss_pred             EEEEEECCCceeeE
Confidence            35566667765443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.54  E-value=8e-13  Score=123.21  Aligned_cols=220  Identities=15%  Similarity=0.130  Sum_probs=142.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-EecCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~~~~~i~v~~~~~~   80 (434)
                      |.+++.||||+||+|.+     .|..|.||+..+++.++.|.++.   ..|.+++|-..-..+. .+.|..|++|+++.+
T Consensus       205 il~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr---~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~  276 (479)
T KOG0299|consen  205 ILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHR---GAVSSLAFRKGTSELYSASADRSVKVWSIDQL  276 (479)
T ss_pred             eEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhcccccc---cceeeeeeecCccceeeeecCCceEEEehhHh
Confidence            57899999999999988     88999999999999999988765   6677889977554444 456789999999987


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...|.++....- ...+.+     ++.+.++++|.++..  .+.+..-  +....-++++-.+ .+++.  
T Consensus       277 s~vetlyGHqd~v~~IdaL~r-eR~vtV-----GgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~In~-~Hfvs--  343 (479)
T KOG0299|consen  277 SYVETLYGHQDGVLGIDALSR-ERCVTV-----GGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFIND-EHFVS--  343 (479)
T ss_pred             HHHHHHhCCccceeeechhcc-cceEEe-----ccccceeEEEecccc--ceeeeeC--CCCCeeeEEEecc-cceee--
Confidence            765566677777877755432 222332     467789999999873  2222211  1111112222111 12111  


Q ss_pred             EecccccCceeecceeEEEEeeCCcce-eeee-----------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVP-----------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~-----------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                       ...+       |...||-+  ..... ....           +..+.-|++++..|....||  +|+.++.|++|-+..
T Consensus       344 -GSdn-------G~IaLWs~--~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~a--sGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  344 -GSDN-------GSIALWSL--LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLA--SGSWSGCVRLWKIED  411 (479)
T ss_pred             -ccCC-------ceEEEeee--cccCceeEeeccccccCCccccccccceeeeEecccCceEE--ecCCCCceEEEEecC
Confidence             1011       22222222  11100 0001           11123788999999998888  799999999997653


Q ss_pred             -----ceeEEe-CCcCeeEEEECCCCCeEEEE
Q 013871          229 -----RPILEL-GSGPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       229 -----~~~~~~-~~~~~~~i~~SP~g~~l~~~  254 (434)
                           +++.++ -.+.||.|+|+++|++|++|
T Consensus       412 g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  412 GLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             CccccceeeecccccEEEEEEEccCCCEEEEe
Confidence                 344455 37889999999999977665

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.7e-13  Score=116.83  Aligned_cols=208  Identities=17%  Similarity=0.256  Sum_probs=149.0

Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceee-ee
Q 013871          115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VP  191 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~  191 (434)
                      +.++.|+|+.+.+..+...+..+..|...+-++.|-.  -|+.|+   +.       +|.|..-||.-+ .+..... .-
T Consensus        30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA---Sc-------sYDgkVIiWke~-~g~w~k~~e~   98 (299)
T KOG1332|consen   30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA---SC-------SYDGKVIIWKEE-NGRWTKAYEH   98 (299)
T ss_pred             cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee---Ee-------ecCceEEEEecC-CCchhhhhhh
Confidence            5567899999987644477889999999999999976  677543   33       344443344321 1111111 11


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------eeEEeCCcCeeEEEECCC---C-----------CeE
Q 013871          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KFL  251 (434)
Q Consensus       192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~~~~~~~~~~~~i~~SP~---g-----------~~l  251 (434)
                      ..+...|++++|.|.+.-|.+.+++.|++|.+++.+..      .+...|.-.+|+++|.|-   |           +.|
T Consensus        99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl  178 (299)
T KOG1332|consen   99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL  178 (299)
T ss_pred             hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence            23478999999999887777778899999999876533      344558889999999996   5           569


Q ss_pred             EEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecCc------
Q 013871          252 CLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGS------  317 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg----~~l~tas~~prl~~D~~i~iw~~~g~------  317 (434)
                      ++||.||   .|+||+.+++  +.-.++++|  .+..++|.|.-    .+|++++.      |+.+.||....+      
T Consensus       179 vSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq------Dg~viIwt~~~e~e~wk~  249 (299)
T KOG1332|consen  179 VSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ------DGTVIIWTKDEEYEPWKK  249 (299)
T ss_pred             eccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC------CCcEEEEEecCccCcccc
Confidence            9999666   9999998875  334446666  55669999974    47889998      999999998643      


Q ss_pred             eeeeeecccceeeEEEcCCCCCCCC
Q 013871          318 LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       318 ~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+.+.-.+.+|.+.|++.+..|.-.
T Consensus       250 tll~~f~~~~w~vSWS~sGn~LaVs  274 (299)
T KOG1332|consen  250 TLLEEFPDVVWRVSWSLSGNILAVS  274 (299)
T ss_pred             cccccCCcceEEEEEeccccEEEEe
Confidence            1122233569999999988766554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=2.6e-12  Score=128.57  Aligned_cols=274  Identities=16%  Similarity=0.143  Sum_probs=166.4

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc---EEEEe-cCCeEEEEeCCCC
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA---VACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~---~la~~-~~~~i~v~~~~~~   80 (434)
                      -.||+|+++|+...      +.+|.||.+.||++++.+..+.   ..+..+.+-|...   ++.+. .+|+|++||-.+.
T Consensus        22 avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~---a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~   92 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHT---APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG   92 (792)
T ss_pred             cccccCCcEEEEee------CCEEEEEecchHhhhhhccccc---CccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence            35999999998755      5789999999999999765543   5666777766443   33344 5799999998775


Q ss_pred             CCceeeeeecCCeeEEEEeCCC--CCeEE--------EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAP--GSHVA--------VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLN  148 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~--~~~ia--------~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~  148 (434)
                      ..........+ +....+.|.-  ....+        ++...+.....+++-+.++++.    .....+-+..  ...+.
T Consensus        93 ~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~----~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   93 ELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD----SAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             EEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc----ccchhhhhhhcCCccEE
Confidence            54333322222 2222221210  00010        1111111222223333332210    0011111111  35677


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      .++.|....+....    ..-+|       .....+.+  .....+.+...+..+++||+++.+|  +|.++|+|.+|.-
T Consensus       168 ~~~~ge~~~i~~~~----~~~~~-------~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~A--a~d~dGrI~vw~d  234 (792)
T KOG1963|consen  168 DNNSGEFKGIVHMC----KIHIY-------FVPKHTKHTSSRDITVHHTFNITCVALSPNERYLA--AGDSDGRILVWRD  234 (792)
T ss_pred             EcCCceEEEEEEee----eEEEE-------EecccceeeccchhhhhhcccceeEEeccccceEE--EeccCCcEEEEec
Confidence            88888876554221    11111       11110100  1111223344588999999999999  6999999999943


Q ss_pred             -c------cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CCCceEEEECCCCCEEEEEE
Q 013871          227 -K------CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       227 -~------~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~~l~tas  298 (434)
                       .      ...+...|...++++.||++|.+|++||   ..|.+.+|.+.+++.-.... +..+..+.||||+.+.++..
T Consensus       235 ~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~  311 (792)
T KOG1963|consen  235 FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL  311 (792)
T ss_pred             cccccccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe
Confidence             2      2234456899999999999999999999   55799999999885222222 23566799999999999999


Q ss_pred             cCCceeeCCcEEEEee
Q 013871          299 TAPRLQIDNGIKIFHH  314 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~  314 (434)
                      .      ||.|.+-+.
T Consensus       312 ~------DNqI~li~~  321 (792)
T KOG1963|consen  312 E------DNQIHLIKA  321 (792)
T ss_pred             c------CceEEEEec
Confidence            9      999999887

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.51  E-value=1.6e-12  Score=122.22  Aligned_cols=253  Identities=14%  Similarity=0.181  Sum_probs=161.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---E--EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---A--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~   76 (434)
                      .++.|+... +|++.+.   ..|+.+++|. +.|+   .  ++...+     ..-.|+.-.....|+++++ ++.|+|||
T Consensus        38 ~s~~w~~~n-~lvvas~---~gdk~~~~~~-K~g~~~~Vp~~~k~~g-----d~~~Cv~~~s~S~y~~sgG~~~~Vkiwd  107 (673)
T KOG4378|consen   38 FSFNWQRRN-FLVVASM---AGDKVMRIKE-KDGKTPEVPRVRKLTG-----DNAFCVACASQSLYEISGGQSGCVKIWD  107 (673)
T ss_pred             eeeeccccc-eEEEeec---CCceeEEEec-ccCCCCccceeecccc-----chHHHHhhhhcceeeeccCcCceeeehh
Confidence            455565543 4776663   3688999996 4444   2  122211     1112454445558888875 57999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee-EEEECCCCCe
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV-QLNWNRGSTG  155 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~-~~~ws~~G~~  155 (434)
                      +.........+-|...|..+.+.-. +.+||..     ...|.|.|..+.+   ++............+ -+.+++..++
T Consensus       108 l~~kl~hr~lkdh~stvt~v~YN~~-DeyiAsv-----s~gGdiiih~~~t---~~~tt~f~~~sgqsvRll~ys~skr~  178 (673)
T KOG4378|consen  108 LRAKLIHRFLKDHQSTVTYVDYNNT-DEYIASV-----SDGGDIIIHGTKT---KQKTTTFTIDSGQSVRLLRYSPSKRF  178 (673)
T ss_pred             hHHHHHhhhccCCcceeEEEEecCC-cceeEEe-----ccCCcEEEEeccc---CccccceecCCCCeEEEeecccccce
Confidence            8753222223344556777766654 5666643     2335778888766   333333333323344 7889999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE  233 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~  233 (434)
                      ++..++.         .|..+||  ++.|. ......  .|..|...|+|+|....+++ +-.+|.+|.+||.+.+...+
T Consensus       179 lL~~asd---------~G~Vtlw--Dv~g~-sp~~~~~~~HsAP~~gicfspsne~l~v-sVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  179 LLSIASD---------KGAVTLW--DVQGM-SPIFHASEAHSAPCRGICFSPSNEALLV-SVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             eeEeecc---------CCeEEEE--eccCC-CcccchhhhccCCcCcceecCCccceEE-EecccceEEEeecccccccc
Confidence            8877633         2444444  44454 222222  25789999999997766665 45679999999997554433


Q ss_pred             -e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC
Q 013871          234 -L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       234 -~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd  290 (434)
                       + -..|..+++|+|+|.+|+.|.   ..|.|..||++.. ..+....+|  .++.++|-|.
T Consensus       246 ~l~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  246 RLTYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eeeecCCcceeeecCCceEEEeec---CCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence             2 467889999999999999887   7799999999865 455555555  5666888665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=6.1e-13  Score=122.95  Aligned_cols=200  Identities=12%  Similarity=0.130  Sum_probs=126.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      .+++|+++|+.|+|+.     .|+.++||+..+-..+..+..+   ...+..+.|||||++|++.+.+..+||++.+...
T Consensus       148 k~vaf~~~gs~latgg-----~dg~lRv~~~Ps~~t~l~e~~~---~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGG-----TDGTLRVWEWPSMLTILEEIAH---HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeecc-----ccceEEEEecCcchhhhhhHhh---cCccccceeCCCCcEEEEecCCceEEEEeccCch
Confidence            3689999999999999     8999999997766554444443   3778899999999999999878999999987532


Q ss_pred             ceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           83 GILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 ~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      .....  -.......+.|+.++..             ..+++......  ...+....       -..|+.+ +.+    
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~-------------~~l~laa~~~~--~~~v~~~~-------~~~w~~~-~~l----  272 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQ-------------ETLRLAASQFP--GGGVRLCD-------ISLWSGS-NFL----  272 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCC-------------ceEEEEEecCC--CCceeEEE-------eeeeccc-ccc----
Confidence            11111  00112333334433210             12222222110  00000000       0011111 100    


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE----eCC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE----LGS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~----~~~  236 (434)
                                                .....+.....|.+++.|+||+++|+  |.|++.|-+|+...-+...    .|.
T Consensus       273 --------------------------~~~~~~~~~~siSsl~VS~dGkf~Al--GT~dGsVai~~~~~lq~~~~vk~aH~  324 (398)
T KOG0771|consen  273 --------------------------RLRKKIKRFKSISSLAVSDDGKFLAL--GTMDGSVAIYDAKSLQRLQYVKEAHL  324 (398)
T ss_pred             --------------------------chhhhhhccCcceeEEEcCCCcEEEE--eccCCcEEEEEeceeeeeEeehhhhe
Confidence                                      00001112458899999999999996  8899999999986544333    388


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..|+.+.|+||.++++..++++   .+.|.-+
T Consensus       325 ~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l  353 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLASVSSDN---EAAVTKL  353 (398)
T ss_pred             eeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence            8999999999999999988666   5555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.50  E-value=2.9e-11  Score=120.09  Aligned_cols=255  Identities=13%  Similarity=0.093  Sum_probs=149.4

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY   86 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~   86 (434)
                      +..++............|.++|...+ ..+.+....   ..+..+.|||||++|++...    .+|++|++..... ...
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~l~~~~---~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~  229 (417)
T TIGR02800       155 STRIAYVSKSGKSRRYELQVADYDGA-NPQTITRSR---EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKV  229 (417)
T ss_pred             CCEEEEEEEeCCCCcceEEEEcCCCC-CCEEeecCC---CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEe
Confidence            45555544222223457889887544 344444432   23447899999999998742    4899999876432 111


Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013871           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ......+..+.|+|++ ..+++....  .....|.+|++.+   + ....+..+........|+|+|+.|++....    
T Consensus       230 ~~~~~~~~~~~~spDg-~~l~~~~~~--~~~~~i~~~d~~~---~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~----  298 (417)
T TIGR02800       230 ASFPGMNGAPAFSPDG-SKLAVSLSK--DGNPDIYVMDLDG---K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDR----  298 (417)
T ss_pred             ecCCCCccceEECCCC-CEEEEEECC--CCCccEEEEECCC---C-CEEECCCCCCCCCCEEECCCCCEEEEEECC----
Confidence            1112235568999984 444433221  2234677778765   2 233333333344567899999998775321    


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEeC-CcCeeEEEE
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILELG-SGPYNTVRW  244 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~~-~~~~~~i~~  244 (434)
                      .     +...||.++..+.....+.. ....+..+.|+|+|+.+++.....+ ..|.++|+.......+. ........|
T Consensus       299 ~-----g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~  372 (417)
T TIGR02800       299 G-----GSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF  372 (417)
T ss_pred             C-----CCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence            1     22357888776654333332 2455678999999999987543221 17888898765444442 223455789


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEEC
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS  288 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~ws  288 (434)
                      +|||++|+.+..++....+++.+... +....+..+  .+..+.||
T Consensus       373 spdg~~l~~~~~~~~~~~l~~~~~~g-~~~~~~~~~~g~~~~~~ws  417 (417)
T TIGR02800       373 APNGRMILYATTRGGRGVLGLVSTDG-RFRARLPLGNGDVREPAWS  417 (417)
T ss_pred             CCCCCEEEEEEeCCCcEEEEEEECCC-ceeeECCCCCCCcCCCCCC
Confidence            99999998887654344677776543 333333322  33335553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.50  E-value=5.5e-11  Score=114.23  Aligned_cols=254  Identities=13%  Similarity=0.121  Sum_probs=151.3

Q ss_pred             EEEecCCeEEEEeCCCCCC-ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeee
Q 013871           64 ACRMATNEIQFFDTTDFPK-GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSF  139 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~  139 (434)
                      ++...++.|.+|++..... .....+. ..+...+.++|++ ..+.+-.    ...+.|.+|++...  +.  .+.... 
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~-~~lyv~~----~~~~~i~~~~~~~~--g~l~~~~~~~-   77 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDK-RHLYVGV----RPEFRVLSYRIADD--GALTFAAESP-   77 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCC-CEEEEEE----CCCCcEEEEEECCC--CceEEeeeec-
Confidence            3334568999999963222 1222232 2457788999984 4443321    13467888998631  21  122221 


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      .....+.+.++|+|+.+++....  +       +...++.++.++.....+ .+......+.++++|+|+++++ +...+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~--~-------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v-~~~~~  147 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYN--A-------NCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWV-PCLKE  147 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcC--C-------CeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEE-eeCCC
Confidence            22345789999999987664211  1       111223332222111111 1222345688999999988876 46667


Q ss_pred             CeEEEEeccc-ceeE-------Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--C--EEEEEeeCC-----
Q 013871          219 ASATIFNKKC-RPIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--G--KQLGTTRAE-----  280 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~-------~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~--~~i~~~~~~-----  280 (434)
                      +.|.+||++. ..+.       .. .......+.|+|+|++++++..+  ++.|.+||++.  +  +.+..+...     
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            8999999864 2121       11 12234579999999999888642  47999999973  3  334433221     


Q ss_pred             ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Ccee---eeeec-ccceeeEEEcCCCCCCCC
Q 013871          281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF---FKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~---~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                         ....+.++|||++|+++...     ++.|.+|+++  +..+   ..... .....+.++|++..+|..
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~-----~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRT-----ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCC-----CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence               22348899999999998542     8999999993  3221   21111 134578899999888865

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=8.4e-13  Score=116.12  Aligned_cols=139  Identities=21%  Similarity=0.418  Sum_probs=102.0

Q ss_pred             EEEEECcCCCEEEEEEcc-CC-------CeEEEEec--ccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871          199 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~-~~-------~~v~l~d~--~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i  265 (434)
                      -.+.|+|+|..+++.... .+       +...||.+  +..++..+   ..++|.+++|||+|+.+|+.. |..+..|.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence            468999999999987652 11       23445544  44443333   356799999999999877653 235569999


Q ss_pred             EEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCCC
Q 013871          266 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       266 wd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ||++ ++.+..+.......+.|||+|++|++|+..   ...+.+.+||... +.+...+......+.|+|++..++..
T Consensus        88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen   88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence            9997 777778876667779999999999999861   1135699999964 45555555668899999999998876

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.1e-11  Score=112.62  Aligned_cols=236  Identities=16%  Similarity=0.196  Sum_probs=146.3

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-C---cE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-G---EA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA   68 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-g---~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~   68 (434)
                      |.||+|=|.+ +-|+.+.      ..-|.||.... +   ..        ..-+.... | ..|++++|.+||..+++++
T Consensus       143 vtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg-h-~pVtsmqwn~dgt~l~tAS  214 (445)
T KOG2139|consen  143 VTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG-H-NPVTSMQWNEDGTILVTAS  214 (445)
T ss_pred             eeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhheeCCC-C-ceeeEEEEcCCCCEEeecc
Confidence            6789999965 4555544      35689997632 1   11        11122222 2 6788999999999999883


Q ss_pred             --CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871           69 --TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        69 --~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                        +..|.|||.+.............++.-+.|||+++..+|.      ..++..++|+..+.  -....... ....+..
T Consensus       215 ~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA------t~davfrlw~e~q~--wt~erw~l-gsgrvqt  285 (445)
T KOG2139|consen  215 FGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA------TCDAVFRLWQENQS--WTKERWIL-GSGRVQT  285 (445)
T ss_pred             cCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe------cccceeeeehhccc--ceecceec-cCCceee
Confidence              5699999998866544444667789999999997766664      34567899965431  11111111 2225567


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc----------ceeeee--cC------C----CCCeEEEEEC
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----------HEGLVP--LR------K----EGPVHDVQWS  204 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----------~~~~v~--l~------~----~~~i~~v~ws  204 (434)
                      ..|+|+|..|++..+.           +..||.+...+.          ....+.  |.      .    -++++.++|.
T Consensus       286 acWspcGsfLLf~~sg-----------sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD  354 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSG-----------SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD  354 (445)
T ss_pred             eeecCCCCEEEEEEcC-----------CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC
Confidence            8899999999886543           233333322110          011111  11      0    4788999999


Q ss_pred             cCCCEEEEEEccCCC------eEEEEecccceeEEeC------CcCeeEEEECC---CCCeEEEEecCCCCCeEEEEEc
Q 013871          205 YSGSEFAVVYGFMPA------SATIFNKKCRPILELG------SGPYNTVRWNP---KGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       205 pdg~~~av~~g~~~~------~v~l~d~~~~~~~~~~------~~~~~~i~~SP---~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      |.|.++||++-..+.      -|.+||.+..+.+++.      ..+-..|.|+|   +|.+|.++-   ..|.+.-|++
T Consensus       355 psGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaW---sTGriq~ypl  430 (445)
T KOG2139|consen  355 PSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAW---STGRIQRYPL  430 (445)
T ss_pred             CCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEe---ccCceEeeee
Confidence            999999998866552      4667888766666541      22234466666   455655554   3356666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.48  E-value=5.1e-12  Score=122.64  Aligned_cols=249  Identities=20%  Similarity=0.286  Sum_probs=180.5

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+..++|-|||..|+.+.++.+.+||++++......+.|.+-|..++||-+ +..+|     +++.+..|-+|+-..   
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~d-GkrFA-----SG~aDK~VI~W~~kl---   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKD-GKRFA-----SGSADKSVIIWTSKL---   84 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccC-Cceec-----cCCCceeEEEecccc---
Confidence            344789999999999999999999999998877888888899999999998 55555     567778899998643   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCE
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~  209 (434)
                        +-..+.-|...+-+|.|||-...|+.++-.+.           .+|.-+     +..+ .......|.+.+|..||.+
T Consensus        85 --EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdF-----------glWS~~-----qK~V~K~kss~R~~~CsWtnDGqy  146 (1081)
T KOG1538|consen   85 --EGILKYSHNDAIQCMSFNPITHQLASCSLSDF-----------GLWSPE-----QKSVSKHKSSSRIICCSWTNDGQY  146 (1081)
T ss_pred             --cceeeeccCCeeeEeecCchHHHhhhcchhhc-----------cccChh-----hhhHHhhhhheeEEEeeecCCCcE
Confidence              11223346667778999998777654432221           122111     1111 1111467899999999999


Q ss_pred             EEEEEccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCC-----eEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          210 FAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGK-----FLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~-----~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |++  |-.+|+|.|-+..+++...+     ...++-+++|+|...     .+++...+.   ++.++.+. |+.|..-..
T Consensus       147 lal--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~Ls-G~~Igk~r~  220 (1081)
T KOG1538|consen  147 LAL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLS-GKQIGKDRA  220 (1081)
T ss_pred             EEE--eccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEec-ceeeccccc
Confidence            996  77789999988766654433     367889999999642     666666544   77777664 566653332


Q ss_pred             --CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-ecc-cceeeEEEcCCCC
Q 013871          280 --ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFD-KLFQAEWKPVSPD  338 (434)
Q Consensus       280 --~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-~~~-~~~~~~w~p~~~~  338 (434)
                        ..+.++++-|+|+|++.|++      |+.+++|.-.|-.+-.. .++ =+|.|.-+|.+.+
T Consensus       221 L~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~  277 (1081)
T KOG1538|consen  221 LNFDPCCISYFTNGEYILLGGS------DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQY  277 (1081)
T ss_pred             CCCCchhheeccCCcEEEEccC------CCceEEEeecCeEEeeccccceeEEEEEEccCCce
Confidence              36667899999999999999      99999999999776553 333 4788888887664

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.48  E-value=2.9e-11  Score=106.90  Aligned_cols=273  Identities=11%  Similarity=0.194  Sum_probs=168.5

Q ss_pred             cceEEec--CCCc-EEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCc-----EEEEecCCe
Q 013871            2 LLLLTCL--RVGL-IIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEA-----VACRMATNE   71 (434)
Q Consensus         2 V~~l~fS--P~g~-~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-----~la~~~~~~   71 (434)
                      +.++.||  |+-+ +|+..+ +.....+.|.|-.+  .+++.+..-...  +...++.+.|.||.+     +|| ..++.
T Consensus        47 lya~~Ws~~~~~~~rla~gS-~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~  122 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGS-FIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLA-TSSDF  122 (364)
T ss_pred             eeeeccccCCCcceeEEEee-eccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhh-cccCe
Confidence            4567777  4444 444443 22222345555544  455554332111  336677899999874     444 34579


Q ss_pred             EEEEeCCCCCCcee---------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           72 IQFFDTTDFPKGIL---------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        72 i~v~~~~~~~~~~~---------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      +++|.+...+....         .......+++|.|.--...+|.+     ...+-++.||++.....+....++-.|..
T Consensus       123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt-----SSiDTTCTiWdie~~~~~~vkTQLIAHDK  197 (364)
T KOG0290|consen  123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT-----SSIDTTCTIWDIETGVSGTVKTQLIAHDK  197 (364)
T ss_pred             EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe-----ecccCeEEEEEEeeccccceeeEEEecCc
Confidence            99999874221111         11112357888887664455553     34556899999987321334667778899


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--C-CCCeEEEEECcCCC-EEEEEEccCC
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K-EGPVHDVQWSYSGS-EFAVVYGFMP  218 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~-~~~i~~v~wspdg~-~~av~~g~~~  218 (434)
                      ++..++|...|..+.  ++...|.+.+       ++.+.....  ..+..+  . ..+...++|++..- ++|. ..-..
T Consensus       198 EV~DIaf~~~s~~~F--ASvgaDGSvR-------mFDLR~leH--STIIYE~p~~~~pLlRLswnkqDpnymAT-f~~dS  265 (364)
T KOG0290|consen  198 EVYDIAFLKGSRDVF--ASVGADGSVR-------MFDLRSLEH--STIIYEDPSPSTPLLRLSWNKQDPNYMAT-FAMDS  265 (364)
T ss_pred             ceeEEEeccCccceE--EEecCCCcEE-------EEEeccccc--ceEEecCCCCCCcceeeccCcCCchHHhh-hhcCC
Confidence            999999999887764  4444555555       344432221  112111  1 46788999998664 4443 23334


Q ss_pred             CeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE------EEEEe-eCCCceEEE
Q 013871          219 ASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK------QLGTT-RAECSVTSE  286 (434)
Q Consensus       219 ~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~------~i~~~-~~~~~~~~~  286 (434)
                      .+|.+.|++  +.++..+  |.+.||.|+|.|+.. .||++|.|   ..+.|||+.+.-      .+..+ .++.+..+.
T Consensus       266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD---~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~  342 (364)
T KOG0290|consen  266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDD---CQALIWDLQQMPRENGEDPILAYTAGGEVNQIQ  342 (364)
T ss_pred             ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCc---ceEEEEecccccccCCCCchhhhhccceeeeee
Confidence            489999997  6666666  899999999999875 89999955   599999998642      12222 334677799


Q ss_pred             ECC-CCCEEEEEE
Q 013871          287 WSP-DGRYFMTAT  298 (434)
Q Consensus       287 wsp-dg~~l~tas  298 (434)
                      |+| .+..|+.+.
T Consensus       343 Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  343 WSSSQPDWIAICF  355 (364)
T ss_pred             ecccCCCEEEEEe
Confidence            995 455666655

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.48  E-value=9e-12  Score=110.60  Aligned_cols=255  Identities=13%  Similarity=0.108  Sum_probs=169.6

Q ss_pred             CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.+.+++||| ...+++.+ -|++|++|++.+....  .....+...|-++.|+-++ ..+.     .++.++.+++|++
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf-----~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVF-----SGGCDKQAKLWDL  101 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEE-----eeccCCceEEEEc
Confidence            6677899999 44555344 5899999999873221  1122334468899999985 3333     2467789999999


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                      .+   + .+.+...|.+.+..+.|-+...+-++++ +.-|++.+.|+..+.          .....+.-.+.++++..-.
T Consensus       102 ~S---~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~----------~pv~t~~LPeRvYa~Dv~~  166 (347)
T KOG0647|consen  102 AS---G-QVSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSS----------NPVATLQLPERVYAADVLY  166 (347)
T ss_pred             cC---C-CeeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCC----------CeeeeeeccceeeehhccC
Confidence            87   4 6677888999999999988777555443 447888887654321          2222333356666665432


Q ss_pred             CCCEEEEEEccCCCeEEEEeccccee-EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee
Q 013871          206 SGSEFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR  278 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~~~~-~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~  278 (434)
                         -++++ +..+..|.+|+++..+. +..    -+-.+.+|+.-+|....++|+   ..|.+.|..++.+  +.-.+++
T Consensus       167 ---pm~vV-ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGs---iEGrv~iq~id~~~~~~nFtFk  239 (347)
T KOG0647|consen  167 ---PMAVV-ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGS---IEGRVAIQYIDDPNPKDNFTFK  239 (347)
T ss_pred             ---ceeEE-EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeee---ecceEEEEecCCCCccCceeEE
Confidence               24544 34467999999964432 111    244567888888888888888   7789999988765  2222222


Q ss_pred             CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-ee--eeecccceeeEEEcCCCC
Q 013871          279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FF--KKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       279 ~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~--~~~~~~~~~~~w~p~~~~  338 (434)
                      .|           .+..++|+|.-..|+|+++      ||.+..||-+-+. |.  +.+.+.+.+..++-.+..
T Consensus       240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs------DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i  307 (347)
T KOG0647|consen  240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS------DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI  307 (347)
T ss_pred             EeccCCCCCCceEEecceEeecccceEEEecC------CceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence            22           2334999999999999999      9999999986542 22  223445666666665543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.47  E-value=3.8e-12  Score=112.52  Aligned_cols=205  Identities=17%  Similarity=0.274  Sum_probs=140.3

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC--CC-----cee-----eeeecccceeEEEECCCC
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ--SQ-----PLA-----RRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~--~~-----~i~-----~~~~~~~~~~~~~ws~~G  153 (434)
                      .+.|-..|.++.+.+..+.++.     +++.++.+.+|++.+.+.  ..     .++     ..+.|+-.+..+.|-|-.
T Consensus        39 ~r~HgGsvNsL~id~tegryml-----SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYML-----SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             eccCCCccceeeeccccceEEe-----ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence            3445566777777776555554     578889999999976331  00     011     123466677788999977


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEecccc-ee
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~~-~~  231 (434)
                      +-+  .+++..|++.+.|...+ +         +..+.+.-++.|++-+|||-.. +-.+..|..+-+|++.|++.. ..
T Consensus       114 tGm--FtssSFDhtlKVWDtnT-l---------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s  181 (397)
T KOG4283|consen  114 TGM--FTSSSFDHTLKVWDTNT-L---------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS  181 (397)
T ss_pred             Cce--eecccccceEEEeeccc-c---------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence            765  34566888888765422 1         2222233378999999999654 444556888889999999743 34


Q ss_pred             EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeC--------------C--CceEEEECCCCC
Q 013871          232 LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--------------E--CSVTSEWSPDGR  292 (434)
Q Consensus       232 ~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~--------------~--~~~~~~wspdg~  292 (434)
                      +.+  |.+.|.++.|||...+++..|.  -||.|++||++.- -+...+..              |  .+..++|+.||+
T Consensus       182 H~LsGHr~~vlaV~Wsp~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  182 HTLSGHRDGVLAVEWSPSSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             eeeccccCceEEEEeccCceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch
Confidence            444  8899999999999997665442  5789999998743 22222221              2  233499999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++++.++      |+.+++|+..
T Consensus       260 ~l~~~gt------d~r~r~wn~~  276 (397)
T KOG4283|consen  260 YLASCGT------DDRIRVWNME  276 (397)
T ss_pred             hhhhccC------ccceEEeecc
Confidence            9999999      9999999983

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.46  E-value=4e-12  Score=120.57  Aligned_cols=198  Identities=12%  Similarity=0.161  Sum_probs=134.8

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871           61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      +.++++..||.+++.+-... ......-|...+.+-.|+|++...+.      .|.+|.|++|+-..    -.-.+.--+
T Consensus        76 d~~~i~s~DGkf~il~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt------~GEDG~iKiWSrsG----MLRStl~Q~  144 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSAR-VERSISAHAAAISSGRWSPDGAGLLT------AGEDGVIKIWSRSG----MLRSTVVQN  144 (737)
T ss_pred             ceEEEEcCCceEEEecccch-hhhhhhhhhhhhhhcccCCCCceeee------ecCCceEEEEeccc----hHHHHHhhc
Confidence            45677777888888764431 11223345556777899999755554      48899999999643    111122224


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      ...+.+++|.|+.+.++++...             .++.-.+ ......+.- .++|-|.++.|+|.++.++  +|.+|-
T Consensus       145 ~~~v~c~~W~p~S~~vl~c~g~-------------h~~IKpL-~~n~k~i~WkAHDGiiL~~~W~~~s~lI~--sgGED~  208 (737)
T KOG1524|consen  145 EESIRCARWAPNSNSIVFCQGG-------------HISIKPL-AANSKIIRWRAHDGLVLSLSWSTQSNIIA--SGGEDF  208 (737)
T ss_pred             CceeEEEEECCCCCceEEecCC-------------eEEEeec-ccccceeEEeccCcEEEEeecCcccccee--ecCCce
Confidence            5577899999999998876321             1111111 111122221 2588999999999998888  799999


Q ss_pred             eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEE
Q 013871          220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.++||..+..++.-  |..++++++|+|+ +.++++++.    +++         +.......+..++|||||..++.|
T Consensus       209 kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n----t~R---------~~~p~~GSifnlsWS~DGTQ~a~g  274 (737)
T KOG1524|consen  209 RFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN----TAR---------FSSPRVGSIFNLSWSADGTQATCG  274 (737)
T ss_pred             eEEeecccCcccccCChhccceeeeeeccc-cceeeeeee----eee---------ecCCCccceEEEEEcCCCceeecc
Confidence            999999998887754  7899999999999 777777643    233         222333466679999999999998


Q ss_pred             Ec
Q 013871          298 TT  299 (434)
Q Consensus       298 s~  299 (434)
                      +.
T Consensus       275 t~  276 (737)
T KOG1524|consen  275 TS  276 (737)
T ss_pred             cc
Confidence            87

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=6.2e-09  Score=100.48  Aligned_cols=261  Identities=15%  Similarity=0.212  Sum_probs=159.3

Q ss_pred             CCCcEEEEEc--CCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEEeCCCC-CCc-eeeeee--c
Q 013871           24 QEKNVILWKT--ETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFFDTTDF-PKG-ILYRLR--V   90 (434)
Q Consensus        24 ~d~~v~iWd~--~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~~~~~~-~~~-~~~~~~--~   90 (434)
                      ..+.|.+|++  .+|+.  +..+....  .-.  .++++|++++|....     .+.|..|++... ... ...+..  .
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~--~Ps--~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g   86 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQTVAEGE--NPS--WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG   86 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEEEEESS--SEC--CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred             CCCcEEEEEEcCCCCCceEeeeecCCC--CCc--eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC
Confidence            3478888887  55654  23322221  123  478999999988873     358999998764 211 222222  2


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-ee-------------cccceeEEEECCCCCeE
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SF-------------FRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~-------------~~~~~~~~~ws~~G~~l  156 (434)
                      .....++++|++ ..+.+..    -..+.|.++++...   ..+... ..             ......++.++|+|+++
T Consensus        87 ~~p~~i~~~~~g-~~l~van----y~~g~v~v~~l~~~---g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   87 SSPCHIAVDPDG-RFLYVAN----YGGGSVSVFPLDDD---GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             SCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTT---SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             CCcEEEEEecCC-CEEEEEE----ccCCeEEEEEccCC---cccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence            244568888884 4433322    12467888888762   222111 11             11234578999999998


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cc
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR  229 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-----~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~  229 (434)
                      ++. +-          |...|+.++.....     ...+.+.....-+.++|+|+|+++.++ ....+.|.+|++.  ..
T Consensus       159 ~v~-dl----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  159 YVP-DL----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             EEE-ET----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTT
T ss_pred             EEE-ec----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCC
Confidence            663 11          22335555544332     122344555566899999999998885 6678899999876  22


Q ss_pred             ee---EEe---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CC--EEEEEee--CCCceEEEECCCCC
Q 013871          230 PI---LEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTR--AECSVTSEWSPDGR  292 (434)
Q Consensus       230 ~~---~~~---~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~--~~i~~~~--~~~~~~~~wspdg~  292 (434)
                      .+   ...   .     ......|++||||++|.++..+.  ..|.+|+++  ++  +.+..+.  +..+..++++|||+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~  304 (345)
T PF10282_consen  227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR  304 (345)
T ss_dssp             EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS
T ss_pred             ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC
Confidence            22   111   1     12456799999999999988764  689999984  33  4444443  34577899999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +|+++...     ++.|.+|+++
T Consensus       305 ~l~Va~~~-----s~~v~vf~~d  322 (345)
T PF10282_consen  305 YLYVANQD-----SNTVSVFDID  322 (345)
T ss_dssp             EEEEEETT-----TTEEEEEEEE
T ss_pred             EEEEEecC-----CCeEEEEEEe
Confidence            99999875     8899999983

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.45  E-value=1.4e-09  Score=105.83  Aligned_cols=296  Identities=16%  Similarity=0.235  Sum_probs=196.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeee-cCCCc-EEEEe-c-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRF-SSDEA-VACRM-A-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~-S~d~~-~la~~-~-~~~i~v~~   76 (434)
                      |.++.|++.+..++..+     .|+.+.+|+...+. .+..+.....  ..+..+.+ ++++. +++.. . ++.+.+|+
T Consensus        68 i~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          68 ITSIAFSPDGELLLSGS-----SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             EEEEEECCCCcEEEEec-----CCCcEEEEEcCCCceeEEEEeccCC--CceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            57889999999999877     78999999998886 5666655321  23334555 88887 44443 3 57999999


Q ss_pred             CCC-CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           77 TTD-FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        77 ~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ... .........+...|..+.++|++. .++.   .. ...+.+++|++..   ...+.....+...+..+.|+|+|..
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGK-LLAS---GS-SLDGTIKLWDLRT---GKPLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCC-EEEe---cC-CCCCceEEEEcCC---CceEEeeccCCCceEEEEEcCCcce
Confidence            986 443344556667888999999954 2221   11 1578999999976   5667777778889999999999983


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeee-ecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I  231 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~  231 (434)
                      ++.  +...|.....|         +.... .... .+. +.... ...|+|++..++  .+..++.+++||.+...  +
T Consensus       213 ~~~--~~~~d~~i~~w---------d~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~  277 (466)
T COG2319         213 LIA--SGSSDGTIRLW---------DLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLA--SGSSDGTIRLWDLRSSSSLL  277 (466)
T ss_pred             EEE--EecCCCcEEEE---------ECCCC-cEEeeecCCCCcce-eEeECCCCCEEE--EecCCCcEEEeeecCCCcEE
Confidence            322  22344444422         11111 1111 121 12222 228999996666  57789999999986332  2


Q ss_pred             EE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee--CC-C-ceEEEECCCCCEEEEEEcCCceee
Q 013871          232 LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--AE-C-SVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       232 ~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~~-~-~~~~~wspdg~~l~tas~~prl~~  305 (434)
                      ..  .|...+.++.|+|++..+++++.   ++.+.+||..+........  .+ . +..+.|++++..++.+...     
T Consensus       278 ~~~~~~~~~v~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  349 (466)
T COG2319         278 RTLSGHSSSVLSVAFSPDGKLLASGSS---DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD-----  349 (466)
T ss_pred             EEEecCCccEEEEEECCCCCEEEEeeC---CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecC-----
Confidence            22  25788999999999998888663   3579999998876555554  44 3 5558885454677776422     


Q ss_pred             CCcEEEEeecCce-eeeeecc-cceeeEEEcCC
Q 013871          306 DNGIKIFHHNGSL-FFKKMFD-KLFQAEWKPVS  336 (434)
Q Consensus       306 D~~i~iw~~~g~~-~~~~~~~-~~~~~~w~p~~  336 (434)
                      |+.+++|++.... ....... .+..+.|.+ .
T Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  381 (466)
T COG2319         350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D  381 (466)
T ss_pred             CCcEEeeecCCCceeEEecCCceEEEEEECC-C
Confidence            8889999997665 2222222 277888888 5

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=4.4e-11  Score=119.92  Aligned_cols=288  Identities=15%  Similarity=0.162  Sum_probs=161.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--Cc-EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GE-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~   77 (434)
                      ++|.+|||+|+||+++.     .||.|.||.--.  +. ...++.+ - |...+.++.||+||.+|.+++. +-+.+|.+
T Consensus       208 ~t~~~~spn~~~~Aa~d-----~dGrI~vw~d~~~~~~~~t~t~lH-W-H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~  280 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGD-----SDGRILVWRDFGSSDDSETCTLLH-W-HHDEVNSLSFSSDGAYLLSGGREGVLVLWQL  280 (792)
T ss_pred             ceeEEeccccceEEEec-----cCCcEEEEeccccccccccceEEE-e-cccccceeEEecCCceEeecccceEEEEEee
Confidence            57899999999999988     789999996322  21 1122222 1 3377889999999999999964 68999999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--------ccceeEEEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--------RCSTVQLNW  149 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--------~~~~~~~~w  149 (434)
                      .+......-++ ...|..+.+||+++. .++...     +..|.+...++......|......        ..=...+..
T Consensus       281 ~T~~kqfLPRL-gs~I~~i~vS~ds~~-~sl~~~-----DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  281 ETGKKQFLPRL-GSPILHIVVSPDSDL-YSLVLE-----DNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             cCCCccccccc-CCeeEEEEEcCCCCe-EEEEec-----CceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            87553222222 234889999999543 333322     456666666542212222211111        112234566


Q ss_pred             CCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC------CC--
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM------PA--  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~------~~--  219 (434)
                      +|.-+.+++.+   .....+.|  |...++|.+.+.+..-..-.....-++..++.+-.|.+++.+....      ++  
T Consensus       354 dpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~  430 (792)
T KOG1963|consen  354 DPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEV  430 (792)
T ss_pred             cCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceE
Confidence            77333333221   12222322  3333444443322110000000123566777777888877533221      22  


Q ss_pred             eEEEEecccce----e-EEe---CC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC------------EEEEEe
Q 013871          220 SATIFNKKCRP----I-LEL---GS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG------------KQLGTT  277 (434)
Q Consensus       220 ~v~l~d~~~~~----~-~~~---~~-~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~------------~~i~~~  277 (434)
                      .+++|--..+.    + ...   |. ..+..+..+|... .+++++   .+|.++||-..+-            +.+..+
T Consensus       431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy  507 (792)
T KOG1963|consen  431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY  507 (792)
T ss_pred             EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeeeecc
Confidence            46667432111    1 111   33 3334455555544 777787   5579999987321            233444


Q ss_pred             eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .-..++.++||-||..| +.+.      |+.|.|||+..
T Consensus       508 ~k~~i~a~~fs~dGsll-a~s~------~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 HKTPITALCFSQDGSLL-AVSF------DDTITIWDYDT  539 (792)
T ss_pred             ccCcccchhhcCCCcEE-EEec------CCEEEEecCCC
Confidence            33366679999999654 4555      99999999965

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=1.1e-12  Score=127.11  Aligned_cols=208  Identities=13%  Similarity=0.196  Sum_probs=143.6

Q ss_pred             CCCCCceEEEEEcCCCCC--CCc-eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE-EEEeeCCccee
Q 013871          113 SKGSPASVQIYACGKDLQ--SQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL-NYLTTDGTHEG  188 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~--~~~-i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l-~~l~~~~~~~~  188 (434)
                      ++|.++.|++|++.....  .++ +.....|..-+..+..-.+|+.++   +...|.+.+.|.+.... +.+.+.+.   
T Consensus        42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlI---S~SsDtTVK~W~~~~~~~~c~stir~---  115 (735)
T KOG0308|consen   42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLI---SASSDTTVKVWNAHKDNTFCMSTIRT---  115 (735)
T ss_pred             ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceE---EecCCceEEEeecccCcchhHhhhhc---
Confidence            467889999999986531  122 445555554444555555666433   23356677766543322 22222232   


Q ss_pred             eeecCCCCCeEEEEE-CcCCCEEEEEEccCCCeEEEEecccc---eeEEe-----------CCcCeeEEEECCCCCeEEE
Q 013871          189 LVPLRKEGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCR---PILEL-----------GSGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       189 ~v~l~~~~~i~~v~w-spdg~~~av~~g~~~~~v~l~d~~~~---~~~~~-----------~~~~~~~i~~SP~g~~l~~  253 (434)
                           |...|.+++. .++...+|  +|+-|++|.+||+...   .+.++           +..++.+++-++.|..|+.
T Consensus       116 -----H~DYVkcla~~ak~~~lva--SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  116 -----HKDYVKCLAYIAKNNELVA--SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             -----ccchheeeeecccCceeEE--ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence                 3788999998 55544444  7889999999998743   22221           3556788999999988888


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee--eecccce
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLF  328 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~--~~~~~~~  328 (434)
                      ||   ..+.|+|||.++++.+..+.+|  ++-.+-.++||+.+++|++      |++|++||+..+ +++.  .+.+.+|
T Consensus       189 Gg---tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~VW  259 (735)
T KOG0308|consen  189 GG---TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGVW  259 (735)
T ss_pred             cC---cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCceE
Confidence            77   6679999999999999888888  6667999999999999999      999999999654 4443  3556677


Q ss_pred             eeEEEcCCCCCCCC
Q 013871          329 QAEWKPVSPDKFGD  342 (434)
Q Consensus       329 ~~~w~p~~~~~~~~  342 (434)
                      .+.-.|.=..+|+.
T Consensus       260 aL~~~~sf~~vYsG  273 (735)
T KOG0308|consen  260 ALQSSPSFTHVYSG  273 (735)
T ss_pred             EEeeCCCcceEEec
Confidence            77666655555554

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.45  E-value=3.7e-11  Score=111.80  Aligned_cols=229  Identities=14%  Similarity=0.163  Sum_probs=148.2

Q ss_pred             CcEEEEe-cCCeEEEEeCCCCCCc-eeeee--------------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCc
Q 013871           61 EAVACRM-ATNEIQFFDTTDFPKG-ILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPA  118 (434)
Q Consensus        61 ~~~la~~-~~~~i~v~~~~~~~~~-~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~  118 (434)
                      |+|+|.+ .+-+|.|||+.-.... ....+                    |...|-+++|.-.-...+|     +++.+.
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa-----SgsaD~  266 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA-----SGSADK  266 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE-----ecCCCc
Confidence            5799998 4679999998532210 01111                    1112233444333223333     678889


Q ss_pred             eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871          119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV  198 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i  198 (434)
                      +|.+|++..   +++......|...+-++.|+|....+++..  ..|++..       |+.+...+.....  ..-.+.|
T Consensus       267 TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG--s~D~~V~-------l~D~R~~~~s~~~--wk~~g~V  332 (463)
T KOG0270|consen  267 TVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG--SYDGTVA-------LKDCRDPSNSGKE--WKFDGEV  332 (463)
T ss_pred             eEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec--cccceEE-------eeeccCccccCce--EEeccce
Confidence            999999998   888888888999999999999877665542  2344433       3333211111111  1226889


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC--
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG--  271 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~--  271 (434)
                      ..++|.|.....+++ +..+|.++-||+|  ++++.++  |.++|.+|.+++.-. ++++++   .++.|.+|++..-  
T Consensus       333 Ekv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  333 EKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSP  408 (463)
T ss_pred             EEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeecCCCC
Confidence            999999987666654 7789999999997  4677766  899999999999876 455555   5679999997632  


Q ss_pred             EEEE--EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          272 KQLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~~i~--~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +.+.  .+.-....+++..|+-.++++.+..     .+.++|||+...
T Consensus       409 ~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~-----k~~~~vwd~~~~  451 (463)
T KOG0270|consen  409 KSVKEHSFKLGRLHCFALDPDVAFTLAFGGE-----KAVLRVWDIFTN  451 (463)
T ss_pred             cccccccccccceeecccCCCcceEEEecCc-----cceEEEeecccC
Confidence            2221  2222233346778887766555441     566999998543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=1.6e-10  Score=113.76  Aligned_cols=222  Identities=11%  Similarity=0.078  Sum_probs=138.7

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcE-EEEe-cC---CeEEEEeCCCCCCceeeeee-cCC-eeEEE
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAV-ACRM-AT---NEIQFFDTTDFPKGILYRLR-VPG-VAAFE   97 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~-la~~-~~---~~i~v~~~~~~~~~~~~~~~-~~~-v~~~~   97 (434)
                      ...|.+-|.. |...+.+...    .....+.|||||+. ++.. ..   ..|.++|+.....   ..+. .++ +....
T Consensus       168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~---~~lt~~~g~~~~~~  239 (419)
T PRK04043        168 KSNIVLADYT-LTYQKVIVKG----GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK---EKIASSQGMLVVSD  239 (419)
T ss_pred             cceEEEECCC-CCceeEEccC----CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE---EEEecCCCcEEeeE
Confidence            4567776653 4444444332    12337899999984 5543 22   3788888866432   2222 333 55678


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      |||+ +..+++....  .....|.++++..   + ....++..........|+|||+.|++....    .     |...|
T Consensus       240 ~SPD-G~~la~~~~~--~g~~~Iy~~dl~~---g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr----~-----g~~~I  303 (419)
T PRK04043        240 VSKD-GSKLLLTMAP--KGQPDIYLYDTNT---K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDR----L-----GYPNI  303 (419)
T ss_pred             ECCC-CCEEEEEEcc--CCCcEEEEEECCC---C-cEEEcccCCCccCccEECCCCCEEEEEECC----C-----CCceE
Confidence            9999 4555444322  2245677777755   3 344444444444567899999999886432    1     34568


Q ss_pred             EEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-------CeEEEEecccceeEEeCCc-CeeEEEECCCCC
Q 013871          178 NYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILELGSG-PYNTVRWNPKGK  249 (434)
Q Consensus       178 ~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-------~~v~l~d~~~~~~~~~~~~-~~~~i~~SP~g~  249 (434)
                      |.+++.++...++...  +. ....|||||+.++++....+       ..|.++|+.+.....+... ......|||||+
T Consensus       304 y~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~  380 (419)
T PRK04043        304 FMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGG  380 (419)
T ss_pred             EEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCC
Confidence            9999887755455432  22 23599999999998764431       3788889877666666333 334589999999


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEE
Q 013871          250 FLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      .|+..........+.+.+++....
T Consensus       381 ~I~f~~~~~~~~~L~~~~l~g~~~  404 (419)
T PRK04043        381 SIMFIKYLGNQSALGIIRLNYNKS  404 (419)
T ss_pred             EEEEEEccCCcEEEEEEecCCCee
Confidence            988876544345677888865533

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.44  E-value=4.5e-11  Score=105.68  Aligned_cols=275  Identities=13%  Similarity=0.188  Sum_probs=169.4

Q ss_pred             CCcEEEEEeecCcCCCCCCeeeec--CCCc-EEEEe-----cCCeEEEEeCCCCCCceeee--eecC-CeeEEEEeCCCC
Q 013871           35 TGEAVYQLFQKNMTKTTWPSIRFS--SDEA-VACRM-----ATNEIQFFDTTDFPKGILYR--LRVP-GVAAFEVSKAPG  103 (434)
Q Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~S--~d~~-~la~~-----~~~~i~v~~~~~~~~~~~~~--~~~~-~v~~~~~sp~~~  103 (434)
                      .++.++.|...-   ... .+.||  +|.+ +||.+     ..|.|+|-.+.........+  +..+ .++.+-|.|+..
T Consensus        34 r~~eiy~Y~ap~---~ly-a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~  109 (364)
T KOG0290|consen   34 RRKEIYTYNAPW---PLY-AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSK  109 (364)
T ss_pred             ccceEEEecCCC---cee-eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcc
Confidence            345566665432   222 67787  3333 45544     23678887765432211111  1122 366778888742


Q ss_pred             C----eEEEEecCCCCCCceEEEEEcCCCC-CCCceee-----eeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013871          104 S----HVAVFVPESKGSPASVQIYACGKDL-QSQPLAR-----RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus       104 ~----~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~-----~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      .    .+|       .....+|||.+.... ...+.+.     .+-|.+..+++.||.-...++...+-  |       .
T Consensus       110 g~~pdlLA-------Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi--D-------T  173 (364)
T KOG0290|consen  110 GVYPDLLA-------TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI--D-------T  173 (364)
T ss_pred             ccCcchhh-------cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc--c-------C
Confidence            1    222       233578999987421 1111121     23355677899999877776554332  2       2


Q ss_pred             ceeEEEEeeC-CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECC
Q 013871          174 ESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNP  246 (434)
Q Consensus       174 ~~~l~~l~~~-~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP  246 (434)
                      .-++|.++.. ..+.....+.+..+|++++|...|..++. +-+.||.+++||++...-.++      ...+...++|++
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FA-SvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk  252 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFA-SVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK  252 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEE-EecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence            2345666553 22234445567889999999997765444 445589999999985432222      245667789998


Q ss_pred             CC-CeEEEEecCCCCCeEEEEEccCC-EEEEEeeCC--CceEEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCcee--
Q 013871          247 KG-KFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSLF--  319 (434)
Q Consensus       247 ~g-~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--~~~~~~wspd-g~~l~tas~~prl~~D~~i~iw~~~g~~~--  319 (434)
                      +. +++|+-..+.  ..|.|.|++.- ..+..++.|  .+..++|.|. +.+|+||+.      |..+.|||++....  
T Consensus       253 qDpnymATf~~dS--~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~  324 (364)
T KOG0290|consen  253 QDPNYMATFAMDS--NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPREN  324 (364)
T ss_pred             CCchHHhhhhcCC--ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccC
Confidence            66 5777655443  58999998854 667777777  4555999997 457888988      99999999965322  


Q ss_pred             ------eeeecccceeeEEEcCCCC
Q 013871          320 ------FKKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       320 ------~~~~~~~~~~~~w~p~~~~  338 (434)
                            .-.--.|+.++.|+|..+.
T Consensus       325 ~~dPilay~a~~EVNqi~Ws~~~~D  349 (364)
T KOG0290|consen  325 GEDPILAYTAGGEVNQIQWSSSQPD  349 (364)
T ss_pred             CCCchhhhhccceeeeeeecccCCC
Confidence                  1113368999999987554

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.1e-12  Score=134.47  Aligned_cols=244  Identities=15%  Similarity=0.151  Sum_probs=163.4

Q ss_pred             ceEEecCCCcE----EEEEecCCCCCCCcEEEEEcCC---CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEE
Q 013871            3 LLLTCLRVGLI----IQTFQKSSTPQEKNVILWKTET---GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQ   73 (434)
Q Consensus         3 ~~l~fSP~g~~----L~t~~~~~~~~d~~v~iWd~~~---g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~   73 (434)
                      ..|+|++.|..    |+.+.     +|++|.+||...   +.....+...+.|...|..+.|++... +||++. +++|.
T Consensus        68 ~kL~W~~~g~~~~GlIaGG~-----edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~  142 (1049)
T KOG0307|consen   68 NKLAWGSYGSHSHGLIAGGL-----EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL  142 (1049)
T ss_pred             eeeeecccCCCccceeeccc-----cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence            46788888777    55544     899999999854   332222222333557888999999765 999885 57999


Q ss_pred             EEeCCCCCCceee-ee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc--ceeEEEE
Q 013871           74 FFDTTDFPKGILY-RL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC--STVQLNW  149 (434)
Q Consensus        74 v~~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~--~~~~~~w  149 (434)
                      |||+++.+..... .. ..+.|..++|.-.-..++|     +.+..+++.|||+..   .+++...+.+..  ....+.|
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILA-----S~s~sg~~~iWDlr~---~~pii~ls~~~~~~~~S~l~W  214 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILA-----SGSPSGRAVIWDLRK---KKPIIKLSDTPGRMHCSVLAW  214 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhh-----ccCCCCCceeccccC---CCcccccccCCCccceeeeee
Confidence            9999886543222 11 3457888888766333344     445567899999987   666666655543  3457899


Q ss_pred             CCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          150 NRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      +|++..-+++++.+. ....+       +|.+.-... -..+--.|...|.++.|++.+.+|++ ++..|+++.+|+.++
T Consensus       215 hP~~aTql~~As~dd~~Pviq-------lWDlR~ass-P~k~~~~H~~GilslsWc~~D~~lll-SsgkD~~ii~wN~~t  285 (1049)
T KOG0307|consen  215 HPDHATQLLVASGDDSAPVIQ-------LWDLRFASS-PLKILEGHQRGILSLSWCPQDPRLLL-SSGKDNRIICWNPNT  285 (1049)
T ss_pred             CCCCceeeeeecCCCCCceeE-------eecccccCC-chhhhcccccceeeeccCCCCchhhh-cccCCCCeeEecCCC
Confidence            999876655554322 22222       333221111 11111235778999999999877777 566799999999964


Q ss_pred             -ceeEEeCC--cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC
Q 013871          229 -RPILELGS--GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       229 -~~~~~~~~--~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                       +.+.++..  .-+..+.|.|..- .++++.   .+|.|.|+.+...
T Consensus       286 gEvl~~~p~~~nW~fdv~w~pr~P~~~A~as---fdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  286 GEVLGELPAQGNWCFDVQWCPRNPSVMAAAS---FDGKISIYSLQGT  329 (1049)
T ss_pred             ceEeeecCCCCcceeeeeecCCCcchhhhhe---eccceeeeeeecC
Confidence             55667743  5677899999776 777777   5579999998754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.42  E-value=6.9e-11  Score=108.52  Aligned_cols=208  Identities=15%  Similarity=0.206  Sum_probs=155.1

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...|...|-++.|+|-++..||     +++.+.+|.||++|...    ...++..+.+|...+-.+.|+|....+++.+.
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIA-----SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIA-----SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             ccCccccccccccCccCCceee-----cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            3455667889999999888888     57788899999999632    25667788889888889999998887765443


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--CCcC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~  238 (434)
                        .|.+         +..+++..+ +..+.+.+..-|+++.|+-||.+|+  +.+.|.+|+|||.+...+. +.  |.+.
T Consensus       152 --~Dn~---------v~iWnv~tg-eali~l~hpd~i~S~sfn~dGs~l~--TtckDKkvRv~dpr~~~~v~e~~~heG~  217 (472)
T KOG0303|consen  152 --SDNT---------VSIWNVGTG-EALITLDHPDMVYSMSFNRDGSLLC--TTCKDKKVRVIDPRRGTVVSEGVAHEGA  217 (472)
T ss_pred             --CCce---------EEEEeccCC-ceeeecCCCCeEEEEEeccCCceee--eecccceeEEEcCCCCcEeeecccccCC
Confidence              2333         333333333 6677788899999999999999999  6788999999999755444 33  4444


Q ss_pred             ee-EEEECCCCCeEEEEecCC-CCCeEEEEEccCCE---EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          239 YN-TVRWNPKGKFLCLAGFGN-LPGDMAFWDYVDGK---QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       239 ~~-~i~~SP~g~~l~~~~~~~-~~g~i~iwd~~~~~---~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      .+ .+.|--+|. |++.||.. .+.++-+||..+.+   .+..+... ++..--|.||...+..++..     |+.||-|
T Consensus       218 k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG-----D~~IRYy  291 (472)
T KOG0303|consen  218 KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG-----DSSIRYF  291 (472)
T ss_pred             CcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC-----CcceEEE
Confidence            33 366778888 66666654 36789999987663   23333333 55567899999999888876     9999999


Q ss_pred             eecCce
Q 013871          313 HHNGSL  318 (434)
Q Consensus       313 ~~~g~~  318 (434)
                      .++...
T Consensus       292 Eit~d~  297 (472)
T KOG0303|consen  292 EITNEP  297 (472)
T ss_pred             EecCCC
Confidence            997764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.42  E-value=1.3e-11  Score=117.27  Aligned_cols=90  Identities=20%  Similarity=0.418  Sum_probs=75.2

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++.|+.++|||||++||.+  +.|+-++|||.....+...-   -+...|++|||||+||++||-|   --|.||.+..+
T Consensus       290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED---DLVtVwSf~er  364 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED---DLVTVWSFEER  364 (636)
T ss_pred             cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc---ceEEEEEeccc
Confidence            6789999999999999975  56899999998776654431   3567899999999999999955   48999999999


Q ss_pred             EEEEEeeCC--CceEEEECC
Q 013871          272 KQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wsp  289 (434)
                      +.+..-++|  +++.++|.|
T Consensus       365 RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEeccccccceeeEeecc
Confidence            999999888  555577774

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.41  E-value=2e-11  Score=118.10  Aligned_cols=286  Identities=14%  Similarity=0.133  Sum_probs=165.6

Q ss_pred             EEecCCC--c-EEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeC
Q 013871            5 LTCLRVG--L-IIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDT   77 (434)
Q Consensus         5 l~fSP~g--~-~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~   77 (434)
                      ..|++.-  . .|+.+.     +|+.|.++|.....--   ++|..-..|...+..+.|-|.+..|++. +|.++++||+
T Consensus        55 ~sFs~~~n~eHiLavad-----E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv  129 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVAD-----EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV  129 (720)
T ss_pred             ccccCCCCccceEEEec-----CCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence            4566532  2 344444     7899999998543211   1222222234566688999977777877 4569999999


Q ss_pred             CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--------------------CCCcee
Q 013871           78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--------------------QSQPLA  135 (434)
Q Consensus        78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--------------------~~~~i~  135 (434)
                      ........  ...|...|.+++|+|.+...++     .++.++.|.||++.-..                    +.++..
T Consensus       130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~-----tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC-----TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             ccceeecceeecccccccchhhhccCCCccee-----eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            87543222  3455667999999998433333     47888999999986321                    001111


Q ss_pred             eee----ecccc---eeEEEECCCCCeEEEEEEecccccCceeeccee--EEEEeeCCcceeeeecC--CCCCeEEEEEC
Q 013871          136 RRS----FFRCS---TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLR--KEGPVHDVQWS  204 (434)
Q Consensus       136 ~~~----~~~~~---~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~--~~~~i~~v~ws  204 (434)
                      ...    .....   .+.+.+..|...|+.  ....|..++.|+-...  .|..+-.+.  ..++..  +.-.+.++...
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaS--aga~D~~iKVWDLRk~~~~~r~ep~~~--~~~~t~skrs~G~~nL~lD  280 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLAS--AGAADSTIKVWDLRKNYTAYRQEPRGS--DKYPTHSKRSVGQVNLILD  280 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeee--ccCCCcceEEEeecccccccccCCCcc--cCccCcccceeeeEEEEec
Confidence            000    00001   122334445554432  2335777776542211  000000000  001111  12344556666


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccc---eeEEeCCc----CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEE
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKCR---PILELGSG----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGT  276 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~~---~~~~~~~~----~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~  276 (434)
                      -.|.++.+  .++|+.|++||+...   ++..+...    ..+.-..||||.+|++|+   .++..++|.+++-+. ...
T Consensus       281 ssGt~L~A--sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgS---sd~~ayiw~vs~~e~~~~~  355 (720)
T KOG0321|consen  281 SSGTYLFA--SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGS---SDEQAYIWVVSSPEAPPAL  355 (720)
T ss_pred             CCCCeEEE--EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccC---CCcceeeeeecCccCChhh
Confidence            66788774  566999999998643   33333222    223445799999999998   567999999987643 333


Q ss_pred             eeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeec
Q 013871          277 TRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +.+|  .++.++|.|.- .-++|++.      |..++||++.
T Consensus       356 l~Ght~eVt~V~w~pS~~t~v~TcSd------D~~~kiW~l~  391 (720)
T KOG0321|consen  356 LLGHTREVTTVRWLPSATTPVATCSD------DFRVKIWRLS  391 (720)
T ss_pred             hhCcceEEEEEeeccccCCCceeecc------CcceEEEecc
Confidence            4445  56668997753 23666777      9999999984

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.41  E-value=2.5e-11  Score=107.16  Aligned_cols=249  Identities=13%  Similarity=0.214  Sum_probs=158.3

Q ss_pred             CCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC--CceEEEEEcCCCCCC------Cceeee
Q 013871           69 TNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS--PASVQIYACGKDLQS------QPLARR  137 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~--~~~v~i~~~~~~~~~------~~i~~~  137 (434)
                      +|+|++.++......   .....+...|..++-+|-...+++......++.  .-..-||.+|..-..      ..++.+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            478888877653321   112233446888888998656666554433322  235789999863211      111122


Q ss_pred             e-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce--eeeecC----CCCCeEEEEECc--CCC
Q 013871          138 S-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLR----KEGPVHDVQWSY--SGS  208 (434)
Q Consensus       138 ~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~----~~~~i~~v~wsp--dg~  208 (434)
                      . ..-..+.++.|-|++..++.++    |.         .|.+++......  ..+...    ......+-+|||  ||+
T Consensus       119 dteavg~i~cvew~Pns~klasm~----dn---------~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD----DN---------NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec----cC---------ceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence            1 2223667899999999988774    22         233333322211  111111    123456778999  899


Q ss_pred             EEEEEEccCCCeEEEEecccce----eEEeCCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC-EEEEEeeCC--
Q 013871          209 EFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--  280 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~~----~~~~~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~--  280 (434)
                      .+++.   .++++..||+++..    +...|...+..+.|+|+-++ |+++|   .+|.|+|||++.- ..+..+.+|  
T Consensus       186 qv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~tk~pv~el~~HsH  259 (370)
T KOG1007|consen  186 QVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKTKFPVQELPGHSH  259 (370)
T ss_pred             eEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCCCccccccCCCce
Confidence            99953   36799999998432    33446777899999999885 55555   5689999998754 566666654  


Q ss_pred             CceEEEECCC-CCEEEEEEcCCceeeCCcEEEEeecCc-------------------------ee-------eeeecccc
Q 013871          281 CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS-------------------------LF-------FKKMFDKL  327 (434)
Q Consensus       281 ~~~~~~wspd-g~~l~tas~~prl~~D~~i~iw~~~g~-------------------------~~-------~~~~~~~~  327 (434)
                      .+..+.|.|- .+.|+++++      |..|.+|....-                         ++       +..+-+.+
T Consensus       260 WvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  260 WVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             EEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            7778999986 456777777      999999975110                         01       12234579


Q ss_pred             eeeEEEcCCCCCCCC
Q 013871          328 FQAEWKPVSPDKFGD  342 (434)
Q Consensus       328 ~~~~w~p~~~~~~~~  342 (434)
                      |.++|+...|.+|..
T Consensus       334 Y~~aWSsadPWiFAS  348 (370)
T KOG1007|consen  334 YALAWSSADPWIFAS  348 (370)
T ss_pred             EEEeeccCCCeeEEE
Confidence            999999999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.1e-10  Score=104.35  Aligned_cols=266  Identities=15%  Similarity=0.156  Sum_probs=157.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEecCCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~~~~i~v~~~~~~~   81 (434)
                      +.++|.+.=.-++...     .|..|+|||-+. ++...+...  .+..+.+++|-|.+ +.|+.+...-|.||..+...
T Consensus       102 r~~aWhqH~~~fava~-----nddvVriy~kss-t~pt~Lks~--sQrnvtclawRPlsaselavgCr~gIciW~~s~tl  173 (445)
T KOG2139|consen  102 RGVAWHQHIIAFAVAT-----NDDVVRIYDKSS-TCPTKLKSV--SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTL  173 (445)
T ss_pred             eeEeechhhhhhhhhc-----cCcEEEEeccCC-CCCceecch--hhcceeEEEeccCCcceeeeeecceeEEEEcCccc
Confidence            3455555333333333     789999999666 555555544  34788899999954 67777778899999975321


Q ss_pred             Cc-ee------e---eeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871           82 KG-IL------Y---RLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        82 ~~-~~------~---~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      .. ..      .   -+..   --|+++.|.+| +..++...+    ..+.|.||+...   ++.+..+.+.......++
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d-gt~l~tAS~----gsssi~iWdpdt---g~~~pL~~~glgg~slLk  245 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNED-GTILVTASF----GSSSIMIWDPDT---GQKIPLIPKGLGGFSLLK  245 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCC-CCEEeeccc----CcceEEEEcCCC---CCcccccccCCCceeeEE
Confidence            10 10      0   0111   24899999998 444443332    246899999987   555544445556677899


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--  226 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--  226 (434)
                      |||||.+++..+   .|..-+       ||...-.-..+.- .+. .+.|....|+|+|+.+.+.....   -++|.+  
T Consensus       246 wSPdgd~lfaAt---~davfr-------lw~e~q~wt~erw-~lg-sgrvqtacWspcGsfLLf~~sgs---p~lysl~f  310 (445)
T KOG2139|consen  246 WSPDGDVLFAAT---CDAVFR-------LWQENQSWTKERW-ILG-SGRVQTACWSPCGSFLLFACSGS---PRLYSLTF  310 (445)
T ss_pred             EcCCCCEEEEec---ccceee-------eehhcccceecce-ecc-CCceeeeeecCCCCEEEEEEcCC---ceEEEEee
Confidence            999999876532   333322       2211000001111 122 56999999999999888654332   233322  


Q ss_pred             --ccc------------eeEEe-----------CCcCeeEEEECCCCCeEEEEecCCC-----CCeEEEEEccCC---EE
Q 013871          227 --KCR------------PILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNL-----PGDMAFWDYVDG---KQ  273 (434)
Q Consensus       227 --~~~------------~~~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~~-----~g~i~iwd~~~~---~~  273 (434)
                        +..            .+.++           --+...+++|.|.|.+|++.-.+..     .+.|.+||...-   +.
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence              100            11111           1456778999999999998754331     356777887654   22


Q ss_pred             E--EEeeCCCceEEEECC---CCCEEEEEEc
Q 013871          274 L--GTTRAECSVTSEWSP---DGRYFMTATT  299 (434)
Q Consensus       274 i--~~~~~~~~~~~~wsp---dg~~l~tas~  299 (434)
                      +  ....+.....+.|+|   +|++|..|=+
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs  421 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWS  421 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEec
Confidence            2  233344455566665   4666655555

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.39  E-value=3.5e-11  Score=114.29  Aligned_cols=175  Identities=15%  Similarity=0.167  Sum_probs=127.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.|-.|||||.=|+|.+     +|+.|+||. .+|-.-.++.+..   ..+.|++|.|+++-++++..+.+.|=-+.-..
T Consensus       107 ~~~gRW~~dGtgLlt~G-----EDG~iKiWS-rsGMLRStl~Q~~---~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~  177 (737)
T KOG1524|consen  107 ISSGRWSPDGAGLLTAG-----EDGVIKIWS-RSGMLRSTVVQNE---ESIRCARWAPNSNSIVFCQGGHISIKPLAANS  177 (737)
T ss_pred             hhhcccCCCCceeeeec-----CCceEEEEe-ccchHHHHHhhcC---ceeEEEEECCCCCceEEecCCeEEEeeccccc
Confidence            56778999999999999     999999998 6675433333332   67779999999999988888887776665544


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      +....+-|..-|-++.|+|. ...|+     ++|.+-..++||--    ++.+.+-..+...+++++|+|+-.++  +++
T Consensus       178 k~i~WkAHDGiiL~~~W~~~-s~lI~-----sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd~~~~--v~S  245 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQ-SNIIA-----SGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPEKDYL--LWS  245 (737)
T ss_pred             ceeEEeccCcEEEEeecCcc-cccee-----ecCCceeEEeeccc----CcccccCChhccceeeeeecccccee--eee
Confidence            44445566666889999998 45554     47888899999964    67788888888899999999993332  221


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                               |      +.+.        +.-...|.|..++|||||.++++  |...|.+.
T Consensus       246 ---------~------nt~R--------~~~p~~GSifnlsWS~DGTQ~a~--gt~~G~v~  281 (737)
T KOG1524|consen  246 ---------Y------NTAR--------FSSPRVGSIFNLSWSADGTQATC--GTSTGQLI  281 (737)
T ss_pred             ---------e------eeee--------ecCCCccceEEEEEcCCCceeec--cccCceEE
Confidence                     1      1111        11122689999999999999995  55455443

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=2.2e-12  Score=126.33  Aligned_cols=221  Identities=13%  Similarity=0.116  Sum_probs=158.3

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG   83 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~   83 (434)
                      +..=..++.|++++     +|..+-+|.+..-..+.+|.++.   ..+.++.|++++.+++.+. +++|++||+......
T Consensus        34 lk~~~s~r~~~~Gg-----~~~k~~L~~i~kp~~i~S~~~he---spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   34 LKIRKSSRSLVTGG-----EDEKVNLWAIGKPNAITSLTGHE---SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             eeeeccceeeccCC-----CceeeccccccCCchhheeeccC---CcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            33333456777766     77888899887666666776654   7888999999999999885 579999999865433


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871           84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                      .....+...+.++.|+|-+     .|. .++..+..+.+|++..   ..++..+..|...+-.+.++|+|.++...   .
T Consensus       106 rtLtgh~~~~~sv~f~P~~-----~~~-a~gStdtd~~iwD~Rk---~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g---~  173 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYG-----EFF-ASGSTDTDLKIWDIRK---KGCSHTYKSHTRVVDVLRLSPDGRWVASG---G  173 (825)
T ss_pred             hhhhccccCcceeeeccce-----EEe-ccccccccceehhhhc---cCceeeecCCcceeEEEeecCCCceeecc---C
Confidence            4455667788889999973     222 3456677899999976   56777766677777788999999986543   2


Q ss_pred             ccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CCcCe
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPY  239 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~  239 (434)
                      .|.+.+.|....+          ...-.+. +++.++.+.|+|..-.++  .|+.|+.+.+||++.-. +.+.  ....+
T Consensus       174 ed~tvki~d~~ag----------k~~~ef~~~e~~v~sle~hp~e~Lla--~Gs~d~tv~f~dletfe~I~s~~~~~~~v  241 (825)
T KOG0267|consen  174 EDNTVKIWDLTAG----------KLSKEFKSHEGKVQSLEFHPLEVLLA--PGSSDRTVRFWDLETFEVISSGKPETDGV  241 (825)
T ss_pred             Ccceeeeeccccc----------ccccccccccccccccccCchhhhhc--cCCCCceeeeeccceeEEeeccCCccCCc
Confidence            3566655443221          1111122 478999999999764444  79999999999998544 3333  35778


Q ss_pred             eEEEECCCCCeEEEEecC
Q 013871          240 NTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~  257 (434)
                      .+..|+|+|+.+++|--.
T Consensus       242 ~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  242 RSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeeeecCCceeeecCchh
Confidence            999999999998877533

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.39  E-value=6.1e-11  Score=109.24  Aligned_cols=251  Identities=14%  Similarity=0.165  Sum_probs=137.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--------C-----Cc---EEEEEeecCcCCCCCCeeeecCCCcEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--------T-----GE---AVYQLFQKNMTKTTWPSIRFSSDEAVAC   65 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--------~-----g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la   65 (434)
                      |.++.|||+|..|++++     .++.|.+|...        +     .+   ....+..   |...+-.++|++|+.+++
T Consensus        68 VN~vRf~p~gelLASg~-----D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~---h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   68 VNVVRFSPDGELLASGG-----DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG---HRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             eEEEEEcCCcCeeeecC-----CCceEEEEEecCcCCccccchhhhCccceEEEEEecc---cccchhhhhccCCCceee
Confidence            78999999999999988     88999999765        2     10   0112222   234444899999999999


Q ss_pred             Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC------CCceEE-----EEEcCCCCCCCc
Q 013871           66 RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG------SPASVQ-----IYACGKDLQSQP  133 (434)
Q Consensus        66 ~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~-----i~~~~~~~~~~~  133 (434)
                      ++ .++.+++||+..+.......-|..-+..++|.|- +.+++.-..+...      ....+.     +.....+..+..
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~  218 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREG  218 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCc
Confidence            98 6899999999886654434444556788888886 3443322111100      000000     000000000111


Q ss_pred             eeeeeecccce-----eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECc-
Q 013871          134 LARRSFFRCST-----VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSY-  205 (434)
Q Consensus       134 i~~~~~~~~~~-----~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wsp-  205 (434)
                      ...+ .|..+.     ..++|+|+|..++.-+.. .+..+...  .+.-|..+-....  ...++.. ..++..+.++| 
T Consensus       219 ~s~r-LfhDeTlksFFrRlsfTPdG~llvtPag~-~~~g~~~~--~n~tYvfsrk~l~rP~~~lp~~-~k~~lavr~~pV  293 (434)
T KOG1009|consen  219 KSTR-LFHDETLKSFFRRLSFTPDGSLLVTPAGL-FKVGGGVF--RNTSYVFSRKDLKRPAARLPSP-KKPALAVRFSPV  293 (434)
T ss_pred             ceee-eeecCchhhhhhhcccCCCCcEEEcccce-eeeCCcee--eceeEeeccccccCceeecCCC-CcceEEEEeeee
Confidence            1111 111111     256899999876542211 11111110  0111222110000  1111111 23444555544 


Q ss_pred             -----------------CCCEEEEEEccCCCeEEEEeccc-ceeE---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871          206 -----------------SGSEFAVVYGFMPASATIFNKKC-RPIL---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       206 -----------------dg~~~av~~g~~~~~v~l~d~~~-~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~  264 (434)
                                       -+-.|||++   -..+.+||.++ .++.   .+|-..++.++||+||.+|++.+   .||...
T Consensus       294 y~elrp~~~~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS---~DGyCS  367 (434)
T KOG1009|consen  294 YYELRPLSSEKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSS---TDGFCS  367 (434)
T ss_pred             EEEeccccccccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEec---cCCceE
Confidence                             222345432   23899999974 4433   45888999999999999999998   667777


Q ss_pred             EEEccCCE
Q 013871          265 FWDYVDGK  272 (434)
Q Consensus       265 iwd~~~~~  272 (434)
                      +.-.+..+
T Consensus       368 ~vtfe~~e  375 (434)
T KOG1009|consen  368 LVTFEPWE  375 (434)
T ss_pred             EEEEcchh
Confidence            76665543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.38  E-value=3.4e-09  Score=103.20  Aligned_cols=277  Identities=18%  Similarity=0.233  Sum_probs=181.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEE-ecCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACR-MATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~-~~~~~i~v~~~~~   79 (434)
                      |.++.|+|++.+++....    .|+.+++|++.++..+..+..+.   ..+.++.|+|++. +++. ..++.|++|+...
T Consensus       158 v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         158 VTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             EEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            568999999998887651    38999999999888877776633   6677999999998 5665 3578999998764


Q ss_pred             CCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           80 FPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..... ....+.... ...|+|++ ..++     ..+.++.+++|++....  ..+.....+...+..+.|+|++..++.
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-----~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         231 GKLLRSTLSGHSDSV-VSSFSPDG-SLLA-----SGSSDGTIRLWDLRSSS--SLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             CcEEeeecCCCCcce-eEeECCCC-CEEE-----EecCCCcEEEeeecCCC--cEEEEEecCCccEEEEEECCCCCEEEE
Confidence            33211 122222332 22788885 3333     34566789999998632  223333445667778899998887655


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEeC
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELG  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~~  235 (434)
                       ...  |.....       +  +..........  ..+...+..+.|.+++..+++ .+..++.+.+|+..... .....
T Consensus       302 -~~~--d~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~  368 (466)
T COG2319         302 -GSS--DGTVRL-------W--DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS-GGSDDGTIRLWDLRTGKPLKTLE  368 (466)
T ss_pred             -eeC--CCcEEE-------E--EcCCCceEEEeeecccCCceEEEEECCCCCEEEE-eecCCCcEEeeecCCCceeEEec
Confidence             322  222222       2  21111111111  233457899999433245554 33456788889886544 22222


Q ss_pred             Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          236 SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       236 ~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      .. .+..+.+++ . ....+ ....++.+.+|+.............  .+..+.+++++.++++++.      ++.+++|
T Consensus       369 ~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  439 (466)
T COG2319         369 GHSNVLSVSFSP-D-GRVVS-SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSS------DNTIRLW  439 (466)
T ss_pred             CCceEEEEEECC-C-CCEEE-EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecC------CCcEEEE
Confidence            22 278999999 6 44443 1115679999999988877777664  5666999999999999888      9999999


Q ss_pred             eecC
Q 013871          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      +...
T Consensus       440 ~~~~  443 (466)
T COG2319         440 DLKT  443 (466)
T ss_pred             eccC
Confidence            9877

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.37  E-value=1e-10  Score=104.51  Aligned_cols=191  Identities=12%  Similarity=0.193  Sum_probs=127.7

Q ss_pred             CcceEEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871            1 MLLLLTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      .|++|.|+|+-.  +|++++     +|+.|.||++..-+++.++..+.   ..|+.++..|.|++..+.+ |..++.||+
T Consensus        85 sitaL~F~~~~S~shLlS~s-----dDG~i~iw~~~~W~~~~slK~H~---~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGS-----DDGHIIIWRVGSWELLKSLKAHK---GQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             ceEEEEecCCcchhheeeec-----CCCcEEEEEcCCeEEeeeecccc---cccceeEecCCCceEEEEcCCceeeeehh
Confidence            478999999886  899888     89999999999889999987765   4588999999999988874 679999998


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      -.+....+..+... ..                                                   .+.|+|.|.+.+
T Consensus       157 V~Gr~a~v~~L~~~-at---------------------------------------------------~v~w~~~Gd~F~  184 (362)
T KOG0294|consen  157 VRGRVAFVLNLKNK-AT---------------------------------------------------LVSWSPQGDHFV  184 (362)
T ss_pred             hcCccceeeccCCc-ce---------------------------------------------------eeEEcCCCCEEE
Confidence            66433222222111 11                                                   245555555444


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--  234 (434)
                      ++....           ..+|.++.....   ..+.....+.++.|- ++..+++  |..++.+.+||.. ..+.+.+  
T Consensus       185 v~~~~~-----------i~i~q~d~A~v~---~~i~~~~r~l~~~~l-~~~~L~v--G~d~~~i~~~D~ds~~~~~~~~A  247 (362)
T KOG0294|consen  185 VSGRNK-----------IDIYQLDNASVF---REIENPKRILCATFL-DGSELLV--GGDNEWISLKDTDSDTPLTEFLA  247 (362)
T ss_pred             EEeccE-----------EEEEecccHhHh---hhhhccccceeeeec-CCceEEE--ecCCceEEEeccCCCccceeeec
Confidence            332110           012222211110   011112346666665 4556663  7778999999987 4444444  


Q ss_pred             CCcCeeEEE--ECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          235 GSGPYNTVR--WNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       235 ~~~~~~~i~--~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      |...|..++  -.|++.+|++++   .||.|+|||++..
T Consensus       248 H~~RVK~i~~~~~~~~~~lvTaS---SDG~I~vWd~~~~  283 (362)
T KOG0294|consen  248 HENRVKDIASYTNPEHEYLVTAS---SDGFIKVWDIDME  283 (362)
T ss_pred             chhheeeeEEEecCCceEEEEec---cCceEEEEEcccc
Confidence            788888876  378899999999   6789999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.37  E-value=4.3e-09  Score=99.06  Aligned_cols=145  Identities=16%  Similarity=0.262  Sum_probs=108.0

Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871          189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       189 ~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i  265 (434)
                      .+++.+.+.|.=..+.-+++.+++  |..++ .+-+||.++..+..+  .-+.+..+..+|+|++++++.   .++.|.+
T Consensus       353 ~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN---dr~el~v  427 (668)
T COG4946         353 SIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN---DRFELWV  427 (668)
T ss_pred             eEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc---CceEEEE
Confidence            345666778888888878776664  66677 999999998887766  457888999999999999886   5579999


Q ss_pred             EEccCCE--EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccc--eeeEEEcCCCCCC
Q 013871          266 WDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKL--FQAEWKPVSPDKF  340 (434)
Q Consensus       266 wd~~~~~--~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~--~~~~w~p~~~~~~  340 (434)
                      .|++++.  .+-.-+..-++.+.|||++++||-|--  .--+-..|+|+|+.|..++....+.-  +.-+|.|++.+|+
T Consensus       428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP--~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP--EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             EEecCCCeeEecccccceeEEEEEcCCceeEEEecC--cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence            9999884  343333446677999999999998743  22335689999999987777655433  3445777776654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.37  E-value=4.5e-12  Score=125.86  Aligned_cols=293  Identities=16%  Similarity=0.176  Sum_probs=183.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~   80 (434)
                      |+|+.|...|.|++|.+     .|.-|+||.++++.++.++.+++   ..++.++-+.+..++|.++. ..|++|.+...
T Consensus       193 Vyca~fDrtg~~Iitgs-----dd~lvKiwS~et~~~lAs~rGhs---~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  193 VYCAIFDRTGRYIITGS-----DDRLVKIWSMETARCLASCRGHS---GDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             eeeeeeccccceEeecC-----ccceeeeeeccchhhhccCCCCc---cccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            88999999999999998     89999999999999999988865   66667888888888888765 48999999987


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~  159 (434)
                      ....+...|...|++++|||-.          +.+.++++++|+..-....-+-.-..+.. .-++.+.+-..|...+  
T Consensus       265 ~pvsvLrghtgavtaiafsP~~----------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~--  332 (1113)
T KOG0644|consen  265 APVSVLRGHTGAVTAIAFSPRA----------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL--  332 (1113)
T ss_pred             chHHHHhccccceeeeccCccc----------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc--
Confidence            7767788888899999999962          45677899999975210000000000000 0111111111111110  


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CC
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GS  236 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~  236 (434)
                             ++ +-.++...|.+...-.        +...+.-+..+.|...+.+ +...+..+.+|++- +...+.+  |.
T Consensus       333 -------Tg-s~d~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~-~ar~~~~~~vwnl~~g~l~H~l~ghs  395 (1113)
T KOG0644|consen  333 -------TG-SRDGEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVV-TARNDHRLCVWNLYTGQLLHNLMGHS  395 (1113)
T ss_pred             -------cc-cCCcccccchhhHhhh--------hccceEEEeccccccccce-eeeeeeEeeeeecccchhhhhhcccc
Confidence                   00 0011111222111111        1112222222323333333 23334467778874 3333333  66


Q ss_pred             cCeeEEEECCCCCeEEE-EecCCCCCeEEEEEccCCEEEEEee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          237 GPYNTVRWNPKGKFLCL-AGFGNLPGDMAFWDYVDGKQLGTTR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~-~~~~~~~g~i~iwd~~~~~~i~~~~-~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      ..+..+.++|....++. +|   .+|...|||+-.+..+..+. +| ..++..||+||..++....      -|.+.|..
T Consensus       396 d~~yvLd~Hpfn~ri~msag---~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~------hgql~i~g  466 (1113)
T KOG0644|consen  396 DEVYVLDVHPFNPRIAMSAG---YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDD------HGQLYILG  466 (1113)
T ss_pred             cceeeeeecCCCcHhhhhcc---CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCC------CCceEEec
Confidence            77888999997765554 55   56899999998875444332 33 5666999999999998776      78899988


Q ss_pred             e-cCceeeeeecccceeeEEEcCCCCCC
Q 013871          314 H-NGSLFFKKMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       314 ~-~g~~~~~~~~~~~~~~~w~p~~~~~~  340 (434)
                      . .|+.......+.++--.++|.-+...
T Consensus       467 ~gqs~s~k~ak~dqffl~dyrplirdTn  494 (1113)
T KOG0644|consen  467 TGQSKSQKKAKYDQFFLGDYRPLIRDTN  494 (1113)
T ss_pred             cCCCccccccccceEeecCccccccccc
Confidence            7 34445555666677667777544433

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.37  E-value=2e-10  Score=112.35  Aligned_cols=250  Identities=9%  Similarity=0.104  Sum_probs=168.8

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee--ecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL--RVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~--~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+..++..++...+..+-+++++||+-....-.....+  +..-|.. +.+.+..+..+.     .++.+..+.+|.+.
T Consensus        15 ~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~-----~g~~D~~i~v~~~~   89 (745)
T KOG0301|consen   15 SDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLV-----VGGMDTTIIVFKLS   89 (745)
T ss_pred             cchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceE-----eecccceEEEEecC
Confidence            556667776666444444578999999755332111111  1111221 333332122232     25677889999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      +   ..++..+..|+..+|++.-..++.    +.+...|.+.+.|--....+           ..-.|...|.+++.-|.
T Consensus        90 ~---~~P~~~LkgH~snVC~ls~~~~~~----~iSgSWD~TakvW~~~~l~~-----------~l~gH~asVWAv~~l~e  151 (745)
T KOG0301|consen   90 Q---AEPLYTLKGHKSNVCSLSIGEDGT----LISGSWDSTAKVWRIGELVY-----------SLQGHTASVWAVASLPE  151 (745)
T ss_pred             C---CCchhhhhccccceeeeecCCcCc----eEecccccceEEecchhhhc-----------ccCCcchheeeeeecCC
Confidence            8   889999999999999999888877    23344666766543221111           12235789999999998


Q ss_pred             CCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC--ce
Q 013871          207 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SV  283 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~--~~  283 (434)
                      + .|+  +|+.|..|++|.-. ...++..|+.-|..+++-|++.+|- ++   .||.|++||+ +++++....+|.  +.
T Consensus       152 ~-~~v--TgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flS-cs---NDg~Ir~w~~-~ge~l~~~~ghtn~vY  223 (745)
T KOG0301|consen  152 N-TYV--TGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLS-CS---NDGSIRLWDL-DGEVLLEMHGHTNFVY  223 (745)
T ss_pred             C-cEE--eccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEe-ec---CCceEEEEec-cCceeeeeeccceEEE
Confidence            7 444  79999999999763 3344555889999999999877764 55   6789999999 788888888873  33


Q ss_pred             EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec--ccceeeEEEcCCC
Q 013871          284 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--DKLFQAEWKPVSP  337 (434)
Q Consensus       284 ~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~~~  337 (434)
                      +++-.+++..|++++.      |++++||+.. .+......  ..+|++..-+.+.
T Consensus       224 sis~~~~~~~Ivs~gE------DrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD  272 (745)
T KOG0301|consen  224 SISMALSDGLIVSTGE------DRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD  272 (745)
T ss_pred             EEEecCCCCeEEEecC------CceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence            4677788899999999      9999999976 55444433  3677777665543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.7e-10  Score=100.74  Aligned_cols=250  Identities=17%  Similarity=0.238  Sum_probs=158.4

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC----CCceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEE
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF----PKGILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~  121 (434)
                      |++.+.++.|.+-|+.+|+++ |.+|.|||....    ......+.|...|..+.|.+-. +..+|+..     .++++.
T Consensus        12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-----~Drtv~   86 (361)
T KOG2445|consen   12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-----YDRTVS   86 (361)
T ss_pred             CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-----cCCcee
Confidence            446778999999999999984 679999996432    2223345666778888887643 45666543     446789


Q ss_pred             EEEcCCCCCC----Cce--eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecce--eEEEEeeCCcce-eeeec
Q 013871          122 IYACGKDLQS----QPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGES--KLNYLTTDGTHE-GLVPL  192 (434)
Q Consensus       122 i~~~~~~~~~----~~i--~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~--~l~~l~~~~~~~-~~v~l  192 (434)
                      ||.-...+..    +=+  +.+.-.+..+..+.|.|.-..|. ++....|.+.+.|..-.  +|-...+..... ...++
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk-lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK-LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE-EEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            9986322111    111  22233456778889998655433 34445677777663221  111111111100 01112


Q ss_pred             C-CCCCeEEEEECcCC---CEEEEEEccCC-----CeEEEEec-----ccceeEEe--CCcCeeEEEECCC-CC---eEE
Q 013871          193 R-KEGPVHDVQWSYSG---SEFAVVYGFMP-----ASATIFNK-----KCRPILEL--GSGPYNTVRWNPK-GK---FLC  252 (434)
Q Consensus       193 ~-~~~~i~~v~wspdg---~~~av~~g~~~-----~~v~l~d~-----~~~~~~~~--~~~~~~~i~~SP~-g~---~l~  252 (434)
                      . ...+..++.|+|.-   ..||+  |++.     +++.||..     +...+.++  ++.+|..|+|.|+ |+   +||
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAv--gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAV--GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             ccccCcceEEeeccccccCceEEE--EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            2 25677899999742   35665  4443     37778743     22334444  6899999999996 33   677


Q ss_pred             EEecCCCCCeEEEEEccC--------------------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871          253 LAGFGNLPGDMAFWDYVD--------------------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~--------------------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~  310 (434)
                      +|.   .+| |+||.+..                    -+.+..+..|  .+..+.|.-.|..|.+++.      ||+||
T Consensus       244 vA~---kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd------DG~VR  313 (361)
T KOG2445|consen  244 VAT---KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD------DGCVR  313 (361)
T ss_pred             Eee---cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC------Cceee
Confidence            777   557 99999873                    1355666666  4677999999999999999      99999


Q ss_pred             EEeec
Q 013871          311 IFHHN  315 (434)
Q Consensus       311 iw~~~  315 (434)
                      +|..+
T Consensus       314 LWkan  318 (361)
T KOG2445|consen  314 LWKAN  318 (361)
T ss_pred             ehhhh
Confidence            99853

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=5e-10  Score=102.75  Aligned_cols=278  Identities=10%  Similarity=0.106  Sum_probs=168.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |.+|.||.+|++|++.+     .|..++||++...      +++.-. .+. |...+-|+.|.....++.++. +++|..
T Consensus        59 iNAlqFS~N~~~L~SGG-----DD~~~~~W~~de~~~~k~~KPI~~~-~~~-H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGG-----DDMHGRVWNVDELMVRKTPKPIGVM-EHP-HRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             cceeeeccCCeEEeecC-----CcceeeeechHHHHhhcCCCCceec-cCc-cccceEEEEEccCCeeEecCCCcceeEe
Confidence            68999999999999988     8899999998532      333322 221 445666999998888888885 479999


Q ss_pred             EeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEECC
Q 013871           75 FDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      .|+.+.+...+....  -..|..+..+|. ++++++..     ..+.|.+|++.... ...++ ....+.....++.|+|
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t-----~~~~V~~~D~Rd~~~~~~~~-~~AN~~~~F~t~~F~P  204 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVT-----RAKLVSFIDNRDRQNPISLV-LPANSGKNFYTAEFHP  204 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCC-CceEEEEe-----cCceEEEEeccCCCCCCcee-eecCCCccceeeeecC
Confidence            998775433222111  225888999998 66665543     34688999986521 11222 2222334455778999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCc----ceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      .--.|++.++..         +..+||.+.....    ......|.. ...-..+.|+|+|.+|..+....  .-.+||+
T Consensus       205 ~~P~Li~~~~~~---------~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~--~P~~~D~  273 (609)
T KOG4227|consen  205 ETPALILVNSET---------GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK--CPLYFDF  273 (609)
T ss_pred             CCceeEEecccc---------CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC--CCEEeee
Confidence            888776654321         2223444322110    001111221 22335789999999998654332  2345565


Q ss_pred             cc--ceeEEeC---Cc-----CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-----C------------------EE
Q 013871          227 KC--RPILELG---SG-----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-----G------------------KQ  273 (434)
Q Consensus       227 ~~--~~~~~~~---~~-----~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-----~------------------~~  273 (434)
                      -.  -.++++.   .+     .+.+++|--|-. +++|+   .+-.|++|-+-.     |                  +.
T Consensus       274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~  349 (609)
T KOG4227|consen  274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGS---DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE  349 (609)
T ss_pred             ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccC---cccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence            32  2233332   12     344577765544 66655   335899997641     1                  12


Q ss_pred             EEEeeCCCc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          274 LGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       274 i~~~~~~~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +..+.+|..  ..+.|+|....|++.+-      .+.||||.-
T Consensus       350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGV------E~~~KlWS~  386 (609)
T KOG4227|consen  350 LTVLRGHRSVPNQVRFSQHNNLLVSSGV------ENSFKLWSD  386 (609)
T ss_pred             eEEEecccccccceeecCCcceEeccch------hhheecccc
Confidence            344566633  34999999888888877      999999963

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.34  E-value=1.9e-10  Score=107.22  Aligned_cols=235  Identities=12%  Similarity=0.173  Sum_probs=153.8

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEE---EEe----------e-----cCcCCCCCCeeeecCCC-cEEEEe-cC
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVY---QLF----------Q-----KNMTKTTWPSIRFSSDE-AVACRM-AT   69 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~---~~~----------~-----~~~~~~~~~~~~~S~d~-~~la~~-~~   69 (434)
                      .|+|+|.+.     .|..|.|||+.=-..+.   ++.          +     .+.|...+..+.|..+- ..||++ .|
T Consensus       191 ~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD  265 (463)
T KOG0270|consen  191 AGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD  265 (463)
T ss_pred             CcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence            378999888     88999999984221111   110          0     01244555578888754 567776 46


Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .+|.+||+...........+...|..++|+|.....+.     +++.+++|.++++...   ......=-+.+++-.+.|
T Consensus       266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL-----sGs~D~~V~l~D~R~~---~~s~~~wk~~g~VEkv~w  337 (463)
T KOG0270|consen  266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL-----SGSYDGTVALKDCRDP---SNSGKEWKFDGEVEKVAW  337 (463)
T ss_pred             ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE-----eccccceEEeeeccCc---cccCceEEeccceEEEEe
Confidence            79999999987765555666778999999998544443     4677889999998642   111111124556778999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      +|......++...  |       |  .+|.+++........++. |+++|..+++++.-..+.+ ++..++.+.+|++..
T Consensus       338 ~~~se~~f~~~td--d-------G--~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~-t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  338 DPHSENSFFVSTD--D-------G--TVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLS-TASTDKVVKLWKFDV  405 (463)
T ss_pred             cCCCceeEEEecC--C-------c--eEEeeecCCCCCceeEEEeccCCcceEEecCCCCccee-eccccceEEEEeecC
Confidence            9987766554321  1       1  356666554434444443 6889999999987777766 577889999998752


Q ss_pred             c-----eeEEeCCcCeeEEEECCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013871          229 R-----PILELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       229 ~-----~~~~~~~~~~~~i~~SP~g~~l-~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .     ..+++.-+...|+++.|+--++ ++||   ..+.++|||+.+..
T Consensus       406 ~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG---~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  406 DSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG---EKAVLRVWDIFTNS  452 (463)
T ss_pred             CCCcccccccccccceeecccCCCcceEEEecC---ccceEEEeecccCh
Confidence            2     1233434446677888877644 4444   44689999987764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.34  E-value=5.2e-11  Score=115.14  Aligned_cols=235  Identities=14%  Similarity=0.212  Sum_probs=157.1

Q ss_pred             ecCCCcEEEEe---cCCeEEEEeCCCCCCceee---e-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871           57 FSSDEAVACRM---ATNEIQFFDTTDFPKGILY---R-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        57 ~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~---~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      |..+.+++|.-   ..|.|-||+++.......-   . .....|+++.|.|-.+..+|+     .+.++.|+||.++...
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV-----a~ddg~i~lWr~~a~g  661 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV-----ATDDGQINLWRLTANG  661 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee-----cccCceEEEEEeccCC
Confidence            34455555542   3579999999875532211   1 223468999999987788886     3567899999997643


Q ss_pred             ----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          130 ----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       130 ----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                          ...+...++.|...++.++|+|-...++..++  .|.+++       ||.+.....  ..--..+.+.|.+++|||
T Consensus       662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as--yd~Ti~-------lWDl~~~~~--~~~l~gHtdqIf~~AWSp  730 (1012)
T KOG1445|consen  662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS--YDSTIE-------LWDLANAKL--YSRLVGHTDQIFGIAWSP  730 (1012)
T ss_pred             CCcccCCcceeeecccceEEEEEecchhhhHhhhhh--ccceee-------eeehhhhhh--hheeccCcCceeEEEECC
Confidence                24556677889999999999997766554432  333433       444432222  222234578999999999


Q ss_pred             CCCEEEEEEccCCCeEEEEecccce--eEEeCCcCe----eEEEECCCCCeEEEEecCCC-CCeEEEEEccCCE--EEEE
Q 013871          206 SGSEFAVVYGFMPASATIFNKKCRP--ILELGSGPY----NTVRWNPKGKFLCLAGFGNL-PGDMAFWDYVDGK--QLGT  276 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~~~--~~~~~~~~~----~~i~~SP~g~~l~~~~~~~~-~g~i~iwd~~~~~--~i~~  276 (434)
                      ||+++|.  -+.|+++++|+-+..+  +++ +.+++    -.|.|.-||+++++.||+.. ...|.+||.++..  .+.+
T Consensus       731 dGr~~At--VcKDg~~rVy~Prs~e~pv~E-g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t  807 (1012)
T KOG1445|consen  731 DGRRIAT--VCKDGTLRVYEPRSREQPVYE-GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYT  807 (1012)
T ss_pred             CCcceee--eecCceEEEeCCCCCCCcccc-CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCccee
Confidence            9999995  4678999999986433  333 23333    35899999999999999863 5688999977542  2322


Q ss_pred             e---eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          277 T---RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 ~---~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .   .++.+..-.+.+|...|+..+..     |..|.+|.+.
T Consensus       808 ~~lDvaps~LvP~YD~Ds~~lfltGKG-----D~~v~~yEv~  844 (1012)
T KOG1445|consen  808 QVLDVAPSPLVPHYDYDSNVLFLTGKG-----DRFVNMYEVI  844 (1012)
T ss_pred             eeecccCccccccccCCCceEEEecCC-----CceEEEEEec
Confidence            2   12244446778887765544443     8999999873

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.34  E-value=2.4e-08  Score=94.77  Aligned_cols=262  Identities=12%  Similarity=0.069  Sum_probs=151.9

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeecC---
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRVP---   91 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~~---   91 (434)
                      ++|.|.|..+++.+..+....     .+....|||++.|+.+.           ++.|.+||..+...  ..++.++   
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF-----LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGP   99 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC-----CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCc
Confidence            789999999999988887643     22345999999777653           37999999988653  3333321   


Q ss_pred             ------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           92 ------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        92 ------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                            ....+.+||++ ..+.++.   ....+.|.+.|+..   ++.+.+...-. ...-+.++.++..+. +    .|
T Consensus       100 ~~~~~~~~~~~~ls~dg-k~l~V~n---~~p~~~V~VvD~~~---~kvv~ei~vp~-~~~vy~t~e~~~~~~-~----~D  166 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDN-KTLLFYQ---FSPSPAVGVVDLEG---KAFVRMMDVPD-CYHIFPTANDTFFMH-C----RD  166 (352)
T ss_pred             hhhccCccceEEECCCC-CEEEEec---CCCCCEEEEEECCC---CcEEEEEeCCC-CcEEEEecCCccEEE-e----ec
Confidence                  23478999994 4444331   12246899999988   66666554321 111112222222111 1    11


Q ss_pred             ccCceeecceeEEEEeeCCcc-eeeeec-CC-CCCeE-EEEECc-CCCEEEEEEccCCCeEEEEecccce------eEEe
Q 013871          166 KTNQSYYGESKLNYLTTDGTH-EGLVPL-RK-EGPVH-DVQWSY-SGSEFAVVYGFMPASATIFNKKCRP------ILEL  234 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~~-~~~i~-~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~------~~~~  234 (434)
                             |......++..|.. ....++ .. +.++. .-.+++ +|+++.+.  +. ++|.+.|+.+..      +..+
T Consensus       167 -------g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs--~e-G~V~~id~~~~~~~~~~~~~~~  236 (352)
T TIGR02658       167 -------GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT--YT-GKIFQIDLSSGDAKFLPAIEAF  236 (352)
T ss_pred             -------CceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe--cC-CeEEEEecCCCcceecceeeec
Confidence                   11001111111110 000001 00 01110 013455 88777763  33 899999964321      1111


Q ss_pred             ---------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEee-CCCceEEEECCCCC-EEEE
Q 013871          235 ---------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGR-YFMT  296 (434)
Q Consensus       235 ---------~~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~-~~~~~~~~wspdg~-~l~t  296 (434)
                               ..+...-++++|+|+.+.++..+.       ..+.|.++|..+++.+..+. +..+..+++||||+ +|++
T Consensus       237 ~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyv  316 (352)
T TIGR02658       237 TEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYA  316 (352)
T ss_pred             cccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEE
Confidence                     122233499999999888754221       12489999999999998876 45777899999999 7666


Q ss_pred             EEcCCceeeCCcEEEEeec-Cceeeee
Q 013871          297 ATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       297 as~~prl~~D~~i~iw~~~-g~~~~~~  322 (434)
                      +...     ++.|.|.|.. ++.+...
T Consensus       317 tn~~-----s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       317 LSTG-----DKTLYIFDAETGKELSSV  338 (352)
T ss_pred             eCCC-----CCcEEEEECcCCeEEeee
Confidence            6532     7889999984 4455544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=1.6e-09  Score=97.14  Aligned_cols=236  Identities=16%  Similarity=0.206  Sum_probs=149.4

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecC--CCCCCceEEEEEcCCCC
Q 013871           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPE--SKGSPASVQIYACGKDL  129 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~--~~~~~~~v~i~~~~~~~  129 (434)
                      .++|+.|..-++.+.+.-.+||+.+-+...........++  ..+-+=   .+++|..-..  ..-.+..|.|||--.  
T Consensus        10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~k--   84 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDLK--   84 (346)
T ss_pred             EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEeccc--
Confidence            6899999999999999999999987654322223333331  111111   2334433211  123567999999443  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcC-C
Q 013871          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYS-G  207 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspd-g  207 (434)
                       ..++...+|. .++..+...++  .|+++.    ..         .||.+.-...-.....++. ..|=--++..|. +
T Consensus        85 -~~~i~el~f~-~~I~~V~l~r~--riVvvl----~~---------~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~  147 (346)
T KOG2111|consen   85 -ERCIIELSFN-SEIKAVKLRRD--RIVVVL----EN---------KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSN  147 (346)
T ss_pred             -CcEEEEEEec-cceeeEEEcCC--eEEEEe----cC---------eEEEEEcCCChhheeeeecccCCCceEeecCCCC
Confidence             6677766654 46667777654  554442    11         2232221111111111110 111113444453 3


Q ss_pred             CEEEEEEccCCCeEEEEecccc-----eeEEeCCcCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC-
Q 013871          208 SEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE-  280 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~-  280 (434)
                      +.+.+.-|...|.|.|-|+...     .+...|...+.|++.+-+|..+|+++   ..| -|+|||..+|+.+..+.-. 
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEEcCCCcEeeeeecCC
Confidence            3444445777889999998532     23345999999999999999999998   444 5899999999988877543 


Q ss_pred             ---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871          281 ---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       281 ---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~  320 (434)
                         .+.+++||||+.+|++++.      -++++||.+.+....
T Consensus       225 d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~~~  261 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTENT  261 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCCCC
Confidence               5566999999999999998      999999999775443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.32  E-value=8.1e-10  Score=98.64  Aligned_cols=256  Identities=11%  Similarity=0.068  Sum_probs=164.6

Q ss_pred             CCCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           49 KTTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ++.+..+.|+|.++ +|+++-|+++++|++...+.... --+...+.+++|.+.  ..+.     .++.++.|+.+|+..
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d~--~~~~-----~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFADE--STIV-----TGGLDGQVRRYDLNT   84 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccCC--ceEE-----EeccCceEEEEEecC
Confidence            36777899998765 55555799999999988653222 222334777777764  2222     357889999999976


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                          ....+..-|...+.++..++.-..+   .++..|++.+.|.+.+.          .....++....|+++..+  |
T Consensus        85 ----~~~~~igth~~~i~ci~~~~~~~~v---IsgsWD~~ik~wD~R~~----------~~~~~~d~~kkVy~~~v~--g  145 (323)
T KOG1036|consen   85 ----GNEDQIGTHDEGIRCIEYSYEVGCV---ISGSWDKTIKFWDPRNK----------VVVGTFDQGKKVYCMDVS--G  145 (323)
T ss_pred             ----CcceeeccCCCceEEEEeeccCCeE---EEcccCccEEEEecccc----------ccccccccCceEEEEecc--C
Confidence                3334455567777788877644432   22336777766654321          122223335577777765  6


Q ss_pred             CEEEEEEccCCCeEEEEeccccee-EEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEee
Q 013871          208 SEFAVVYGFMPASATIFNKKCRPI-LEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR  278 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~~~-~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~  278 (434)
                      +.|+|  |..+.++.+||++.... ++.    -+-.+.+++.-|++.-.++++   .+|.|.+=..+..    +.-..|+
T Consensus       146 ~~LvV--g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFk  220 (323)
T KOG1036|consen  146 NRLVV--GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFK  220 (323)
T ss_pred             CEEEE--eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEE
Confidence            67775  66788999999974322 211    245678999999888777777   6677776444432    2222333


Q ss_pred             CC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec--ccceeeEEEcCCCCCCCC
Q 013871          279 AE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF--DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       279 ~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~--~~~~~~~w~p~~~~~~~~  342 (434)
                      .|           .+..++|+|--..|+||+.      ||-|-+||...+ .+.+.+.  ..+-.++++-++..|.-+
T Consensus       221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             eeecccCCceEEEEeceeEeccccceEEecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            32           3445999999999999999      999999998654 3333322  347777787776554443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.31  E-value=5.1e-10  Score=100.66  Aligned_cols=238  Identities=14%  Similarity=0.167  Sum_probs=157.8

Q ss_pred             CCCCeeeecC-----CCcEEEEecCCeEEEEeCCCCCCceeee-----eecCCeeEEEEeCCC---CCeEEEEecCCCCC
Q 013871           50 TTWPSIRFSS-----DEAVACRMATNEIQFFDTTDFPKGILYR-----LRVPGVAAFEVSKAP---GSHVAVFVPESKGS  116 (434)
Q Consensus        50 ~~~~~~~~S~-----d~~~la~~~~~~i~v~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~---~~~ia~~~~~~~~~  116 (434)
                      ..+..++|.+     +.+.+|+.+.+.+.+|+.+........+     -+.+....++|+=+.   ++++++     +|.
T Consensus        39 ~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~-----~G~  113 (385)
T KOG1034|consen   39 KPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA-----GGY  113 (385)
T ss_pred             CccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe-----ecc
Confidence            4455677763     3467888888999999986533111111     123345566776542   345543     467


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCC
Q 013871          117 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG  196 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~  196 (434)
                      .|.|+|.++..   ++.....-.|...+..+++.|+...|++.++  .|.+.+.|.-.+.... -+.|+.+     .+.+
T Consensus       114 ~GvIrVid~~~---~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv-~VfGG~e-----gHrd  182 (385)
T KOG1034|consen  114 LGVIRVIDVVS---GQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCV-AVFGGVE-----GHRD  182 (385)
T ss_pred             eeEEEEEecch---hhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEeccCCeEE-EEecccc-----cccC
Confidence            78999999987   7788888889999999999999888776654  5667775543333222 1223221     2468


Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccce----------------------------eE---EeCCcCee-----
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----------------------------IL---ELGSGPYN-----  240 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----------------------------~~---~~~~~~~~-----  240 (434)
                      .|.++.|+++|.+|+  ++.||.++.+|++....                            .+   ++|...|.     
T Consensus       183 eVLSvD~~~~gd~i~--ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~  260 (385)
T KOG1034|consen  183 EVLSVDFSLDGDRIA--SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF  260 (385)
T ss_pred             cEEEEEEcCCCCeee--ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence            999999999999888  79999999999865110                            00   00111110     


Q ss_pred             ---------------------------------------------------EEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          241 ---------------------------------------------------TVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       241 ---------------------------------------------------~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                                                                         -.+|.|-+++||+|+   ..|+|++||++
T Consensus       261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn---q~g~v~vwdL~  337 (385)
T KOG1034|consen  261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN---QSGKVYVWDLD  337 (385)
T ss_pred             hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc---CCCcEEEEECC
Confidence                                                               134555666777665   66899999998


Q ss_pred             CCEE--EEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          270 DGKQ--LGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       270 ~~~~--i~~~~~----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..+.  ..++.+    ..+-..+||-||..|+..+.      |+.|.-||.
T Consensus       338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd------d~~Vwrwdr  382 (385)
T KOG1034|consen  338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD------DGTVWRWDR  382 (385)
T ss_pred             CCCCccCceEEeccccceeeeeeecccCcEEEEEeC------CCcEEEEEe
Confidence            7643  222222    23445999999999999998      999999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=3.2e-08  Score=95.47  Aligned_cols=262  Identities=15%  Similarity=0.157  Sum_probs=150.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEe
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~   76 (434)
                      ..|++||++++|.+..... ..++.|..|++..  |+.  +.+......  ... .++.++|+++|+.+  .++.|.+|+
T Consensus        40 s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~--~p~-~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGS--SPC-HIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSS--CEE-EEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCC--CcE-EEEEecCCCEEEEEEccCCeEEEEE
Confidence            4588999999999887322 2357888888765  433  333332211  223 68899999999887  468999999


Q ss_pred             CCCCCCceee--ee------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---ee-
Q 013871           77 TTDFPKGILY--RL------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RS-  138 (434)
Q Consensus        77 ~~~~~~~~~~--~~------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~-  138 (434)
                      +.........  ..            .......+.++|++ ..+.+  ++. + ...|.+|++...  ...+..   .. 
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v--~dl-G-~D~v~~~~~~~~--~~~l~~~~~~~~  188 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYV--PDL-G-ADRVYVYDIDDD--TGKLTPVDSIKV  188 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEE--EET-T-TTEEEEEEE-TT--S-TEEEEEEEEC
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEE--Eec-C-CCEEEEEEEeCC--CceEEEeecccc
Confidence            9764321111  11            11346678999984 44422  222 1 257899998763  112222   11 


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee-CCcce--eeee-cC--C--CCCeEEEEECcCCCEE
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHE--GLVP-LR--K--EGPVHDVQWSYSGSEF  210 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~-~~~~~--~~v~-l~--~--~~~i~~v~wspdg~~~  210 (434)
                      .....-..+.|+|+|+++.+...  .+.+..       ++.++. .+...  ..+. +.  .  .....+++++|||+++
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~-------v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l  259 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNE--LSNTVS-------VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL  259 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEET--TTTEEE-------EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred             ccCCCCcEEEEcCCcCEEEEecC--CCCcEE-------EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEE
Confidence            12344568999999999876532  221111       222221 11111  1111 11  1  2257899999999988


Q ss_pred             EEEEccCCCeEEEEeccc--cee---EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEEEE---Eee
Q 013871          211 AVVYGFMPASATIFNKKC--RPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQLG---TTR  278 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~--~~~---~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~i~---~~~  278 (434)
                      .+. ......|.+|++..  ..+   ..+  ....-..+.++|+|++|+++..+.  +.|.+|++  ++|++..   ...
T Consensus       260 yvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf~~d~~tG~l~~~~~~~~  336 (345)
T PF10282_consen  260 YVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS--NTVSVFDIDPDTGKLTPVGSSVP  336 (345)
T ss_dssp             EEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETTTTEEEEEEEEEE
T ss_pred             EEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--CeEEEEEEeCCCCcEEEeccccc
Confidence            874 44567999999832  222   222  233346799999999999988654  68999876  4665433   245


Q ss_pred             CCCceEEEE
Q 013871          279 AECSVTSEW  287 (434)
Q Consensus       279 ~~~~~~~~w  287 (434)
                      .+.++++.|
T Consensus       337 ~~~p~ci~f  345 (345)
T PF10282_consen  337 IPSPVCIVF  345 (345)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCCEEEeC
Confidence            556777665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.30  E-value=2e-10  Score=100.32  Aligned_cols=272  Identities=15%  Similarity=0.171  Sum_probs=164.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+++.|-.+++ |.+..     .-+.|++|++.+...+..+....  ...+..++--|+++++.-+-|..+.+|++....
T Consensus        17 v~s~~fqa~~r-L~sg~-----~~G~V~~w~lqt~r~~~~~r~~g--~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~   88 (323)
T KOG0322|consen   17 VTSVLFQANER-LMSGL-----SVGIVKMWVLQTERDLPLIRLFG--RLFITNLQSIPNDSLDTQGRDPLLILWTIAYSA   88 (323)
T ss_pred             heehhhccchh-hhccc-----ccceEEEEEeecCccchhhhhhc--cceeeceeecCCcchhhcCCCceEEEEEccCcc
Confidence            45566666555 44433     66899999998887766655321  244556777788777766678899999987633


Q ss_pred             CceeeeeecC--CeeEEEEeCCCCCe--EEEEecCC---------CCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871           82 KGILYRLRVP--GVAAFEVSKAPGSH--VAVFVPES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        82 ~~~~~~~~~~--~v~~~~~sp~~~~~--ia~~~~~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      -.....+...  +.-.+++++++.+.  +..+ |..         .+.+-.+++-+-+...          -.....+..
T Consensus        89 ~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y-p~rgsde~h~~D~g~~tqv~i~dd~~~~----------Klgsvmc~~  157 (323)
T KOG0322|consen   89 FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY-PSRGSDETHKQDGGDTTQVQIADDSERS----------KLGSVMCQD  157 (323)
T ss_pred             eEEEeeeeccccccccceeccCCCcchhheec-CCcccchhhhhccCccceeEccCchhcc----------ccCceeeee
Confidence            2222222222  22334555554332  2222 221         1122233332222110          011223334


Q ss_pred             EC-CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-----------CCCCCeEEEEECcCCCEEEEEEcc
Q 013871          149 WN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-----------RKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       149 ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-----------~~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      |. .++++++.++.-+.        |...+|.++..   +..+.+           .++++|.++.+.+.-..=+  .|.
T Consensus       158 ~~~~c~s~~lllaGyEs--------ghvv~wd~S~~---~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGi--sgg  224 (323)
T KOG0322|consen  158 KDHACGSTFLLLAGYES--------GHVVIWDLSTG---DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGI--SGG  224 (323)
T ss_pred             ccccccceEEEEEeccC--------CeEEEEEccCC---ceeeccccccccccchhhccCcceeeeechhhcCCc--CCC
Confidence            33 35666666553321        33344544321   222221           2478999999886433333  355


Q ss_pred             CCCeEEEEecccc-------eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871          217 MPASATIFNKKCR-------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       217 ~~~~v~l~d~~~~-------~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      -+.++..|++...       ....+.+-.++.+..-||++.+|++|   -||.|+||..+++..+..+.-|  .+..++|
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrtl~pLAVLkyHsagvn~vAf  301 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAF  301 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEeccCCchhhhhhhhcceeEEEe
Confidence            5558888876421       12334566788899999999999999   5569999999999888777666  6667999


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +||...++.|+.      |..|-+|++
T Consensus       302 spd~~lmAaask------D~rISLWkL  322 (323)
T KOG0322|consen  302 SPDCELMAAASK------DARISLWKL  322 (323)
T ss_pred             CCCCchhhhccC------CceEEeeec
Confidence            999999999999      999999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.30  E-value=1.9e-09  Score=107.68  Aligned_cols=261  Identities=13%  Similarity=0.196  Sum_probs=156.4

Q ss_pred             CcEEEEEcCCC-cEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceee------eeecCCeeEE
Q 013871           26 KNVILWKTETG-EAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILY------RLRVPGVAAF   96 (434)
Q Consensus        26 ~~v~iWd~~~g-~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~------~~~~~~v~~~   96 (434)
                      ..+.||++.+- ..-..+...    ..++++.|+| +..+||.| .+|+|.+||+.........      .-|.+.+..+
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESP----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCceEEEecC----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            47999999766 333333332    6677999999 45666666 4689999999764431111      1223456666


Q ss_pred             EEeCCCCC--eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---------ecccceeEEEECCCCCeEEEEEEeccc
Q 013871           97 EVSKAPGS--HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---------FFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        97 ~~sp~~~~--~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---------~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      .|-.+..+  .+.+      ..+|.|..|++.............         --......+.|.+......++. ++  
T Consensus       298 vW~~~~~~~~f~s~------ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVG-Te--  368 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSL------SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVG-TE--  368 (555)
T ss_pred             EEeccCCCCceEEE------ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEE-cC--
Confidence            66554333  2222      347889999877643211111111         1112345666666544433321 11  


Q ss_pred             ccCceeecceeEEEEeeCCcce--------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeEEe-
Q 013871          166 KTNQSYYGESKLNYLTTDGTHE--------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL-  234 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~--------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~~~-  234 (434)
                       .|..+.|       .-.+...        ......+.++|+.+.++|=+..+....|  |-.++||...  ..++..+ 
T Consensus       369 -~G~v~~~-------~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  369 -EGKVYKG-------CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             -CcEEEEE-------eccCCcccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhh
Confidence             1222211       1111111        1112235799999999998877776555  6799999765  5566655 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                       +...+.+++|||----+...+.  .+|+|.|||+...  +.+.+..  ......+.|+++|+.|++|..      .|.+
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d--~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~------~G~~  510 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVD--GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA------NGTT  510 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEc--CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC------CCcE
Confidence             4566899999997764444442  5699999998743  3333322  223344899999999999998      8999


Q ss_pred             EEEeecCc
Q 013871          310 KIFHHNGS  317 (434)
Q Consensus       310 ~iw~~~g~  317 (434)
                      ++|++...
T Consensus       511 ~~~~l~~~  518 (555)
T KOG1587|consen  511 HILKLSES  518 (555)
T ss_pred             EEEEcCch
Confidence            99997544

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=1.4e-09  Score=94.05  Aligned_cols=262  Identities=8%  Similarity=0.075  Sum_probs=162.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC---------c-EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG---------E-AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~-~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |.+-++||.++||+...     .++.|.+..+.+.         + .+-.+..   |...+..+.|.  +.+|.+++++.
T Consensus        13 vf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~--d~~Lls~gdG~   82 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFH--DDFLLSGGDGL   82 (325)
T ss_pred             HHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeeeee--hhheeeccCce
Confidence            34557899999999988     7899999987432         1 1222222   23455577776  56777888899


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      |+=|.-..+...    .+.                             -++|.+..     +...-...--++..|...|
T Consensus        83 V~gw~W~E~~es----~~~-----------------------------K~lwe~~~-----P~~~~~~evPeINam~ldP  124 (325)
T KOG0649|consen   83 VYGWEWNEEEES----LAT-----------------------------KRLWEVKI-----PMQVDAVEVPEINAMWLDP  124 (325)
T ss_pred             EEEeeehhhhhh----ccc-----------------------------hhhhhhcC-----ccccCcccCCccceeEecc
Confidence            999987664421    000                             01121110     0000000001233444555


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~  231 (434)
                      ..+.|++..            |+..+|.+++..+...+.--.+...||++.--....++.  +|.+|+++++||.++..-
T Consensus       125 ~enSi~~Ag------------GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil--sG~EDGtvRvWd~kt~k~  190 (325)
T KOG0649|consen  125 SENSILFAG------------GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL--SGAEDGTVRVWDTKTQKH  190 (325)
T ss_pred             CCCcEEEec------------CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee--ecCCCccEEEEeccccce
Confidence            555555432            334577777776655555555688999998844444555  699999999999985443


Q ss_pred             -EEeC-CcCeeE---------EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEc
Q 013871          232 -LELG-SGPYNT---------VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATT  299 (434)
Q Consensus       232 -~~~~-~~~~~~---------i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~  299 (434)
                       ..++ ...-++         .+..-+..+|++|+.-    .+.+|++.+.+....+.-+... .+.|--|  .++.++.
T Consensus       191 v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp----~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~  264 (325)
T KOG0649|consen  191 VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP----KLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE  264 (325)
T ss_pred             eEEeccccChhhcCcccCceeEEEeccCceEEecCCC----ceeEEeccCCCceEEEecccceeEeeeecc--eEEEecc
Confidence             3221 011111         2233355688777633    6999999999888887766433 3777654  6777787


Q ss_pred             CCceeeCCcEEEEeecCceeeeeecc--cceeeEEEcCCC
Q 013871          300 APRLQIDNGIKIFHHNGSLFFKKMFD--KLFQAEWKPVSP  337 (434)
Q Consensus       300 ~prl~~D~~i~iw~~~g~~~~~~~~~--~~~~~~w~p~~~  337 (434)
                            .|.+.-|.++|.+-...+.+  -++...|+-.|-
T Consensus       265 ------g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~  298 (325)
T KOG0649|consen  265 ------GNHVQSYTLNGVLQANIPVESTACYSASWQTSPI  298 (325)
T ss_pred             ------ccceeeeeeccEEEEeccCCccceeeecccCCce
Confidence                  89999999999987776654  577888887763

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.28  E-value=3.3e-10  Score=100.17  Aligned_cols=246  Identities=16%  Similarity=0.184  Sum_probs=144.4

Q ss_pred             cceEEecCCC-cEEEEEecCCCCC--CCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQ--EKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~--d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |+.|+=||.. +.|+|+-...+..  -....||.+...         +++..+....  ...+.|+.|-|++..|+++.+
T Consensus        66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea--vg~i~cvew~Pns~klasm~d  143 (370)
T KOG1007|consen   66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA--VGKINCVEWEPNSDKLASMDD  143 (370)
T ss_pred             eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH--hCceeeEEEcCCCCeeEEecc
Confidence            5677778854 4555554222111  134679987432         2233333222  145679999999999999999


Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      +.|.+|++.+.... ...+         .++.           +.+                        +......-+|
T Consensus       144 n~i~l~~l~ess~~-vaev---------~ss~-----------s~e------------------------~~~~ftsg~W  178 (370)
T KOG1007|consen  144 NNIVLWSLDESSKI-VAEV---------LSSE-----------SAE------------------------MRHSFTSGAW  178 (370)
T ss_pred             CceEEEEcccCcch-heee---------cccc-----------ccc------------------------ccceeccccc
Confidence            99999999774321 1111         0111           000                        0111124467


Q ss_pred             CC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          150 NR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       150 s~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      ||  +|+.++..    .|.+         |..+++... .+...+.  +...|.++.|.|+-.++.+ +++.|+.|+|||
T Consensus       179 spHHdgnqv~tt----~d~t---------l~~~D~RT~-~~~~sI~dAHgq~vrdlDfNpnkq~~lv-t~gDdgyvriWD  243 (370)
T KOG1007|consen  179 SPHHDGNQVATT----SDST---------LQFWDLRTM-KKNNSIEDAHGQRVRDLDFNPNKQHILV-TCGDDGYVRIWD  243 (370)
T ss_pred             CCCCccceEEEe----CCCc---------EEEEEccch-hhhcchhhhhcceeeeccCCCCceEEEE-EcCCCccEEEEe
Confidence            77  67765543    2223         334433322 1222221  2456889999998766665 677899999999


Q ss_pred             cc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-----------------------------
Q 013871          226 KK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-----------------------------  271 (434)
Q Consensus       226 ~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-----------------------------  271 (434)
                      .+  ..+++++  |..-+-++.|+|.-. +|+++|.|   ..|.+|...+-                             
T Consensus       244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD---s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d  320 (370)
T KOG1007|consen  244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD---SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD  320 (370)
T ss_pred             ccCCCccccccCCCceEEEEEEecCccceEEEecCCC---ceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence            97  4667777  567788999999654 66666644   47888764320                             


Q ss_pred             EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      -.+.++..|  .+..++||.-...+...-++     ||.+.|=.+.-.
T Consensus       321 g~l~tydehEDSVY~~aWSsadPWiFASLSY-----DGRviIs~V~r~  363 (370)
T KOG1007|consen  321 GQLETYDEHEDSVYALAWSSADPWIFASLSY-----DGRVIISSVPRF  363 (370)
T ss_pred             cccccccccccceEEEeeccCCCeeEEEecc-----CceEEeecCChh
Confidence            022344444  44559999877765544433     777766555433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.28  E-value=6.5e-11  Score=108.70  Aligned_cols=117  Identities=22%  Similarity=0.427  Sum_probs=94.2

Q ss_pred             CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEecc--------cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCC
Q 013871          194 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--------CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPG  261 (434)
Q Consensus       194 ~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~--------~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g  261 (434)
                      +.++|.+++|+|-.. .+|  +|+.|.+|.||.+-        .+++..+  |...+..++|+|... .|+++|.||   
T Consensus        80 Ht~~vLDi~w~PfnD~vIA--SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn---  154 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIA--SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN---  154 (472)
T ss_pred             ccccccccccCccCCceee--cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc---
Confidence            589999999999544 444  79999999999762        3344444  788899999999875 677788666   


Q ss_pred             eEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871          262 DMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  321 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~  321 (434)
                      +|.+||+.+++.+-++.+++.+ .+.|+-||.+|+|++.      |..|||||. .|+++.+
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck------DKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK------DKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecc------cceeEEEcCCCCcEeee
Confidence            9999999999888888866544 4999999999999999      999999997 4444443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=8.1e-08  Score=91.21  Aligned_cols=245  Identities=9%  Similarity=0.074  Sum_probs=138.1

Q ss_pred             ecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEe--c-CCeEE
Q 013871            7 CLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRM--A-TNEIQ   73 (434)
Q Consensus         7 fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~--~-~~~i~   73 (434)
                      +||||++|..+..+.     +..+..|.|||+.+++.+..+.....     -...+ .+++||||++|...  . ++.|-
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~-~~~ls~dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPW-MTSLTPDNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccc-eEEECCCCCEEEEecCCCCCEEE
Confidence            999999999887522     23467899999999999988775321     01223 67999999988866  3 57999


Q ss_pred             EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE----E-
Q 013871           74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL----N-  148 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~----~-  148 (434)
                      +.|+....  ....+..++...+-.++....++.|  .+     +......+.... .....+..+|..+...+    . 
T Consensus       132 VvD~~~~k--vv~ei~vp~~~~vy~t~e~~~~~~~--~D-----g~~~~v~~d~~g-~~~~~~~~vf~~~~~~v~~rP~~  201 (352)
T TIGR02658       132 VVDLEGKA--FVRMMDVPDCYHIFPTANDTFFMHC--RD-----GSLAKVGYGTKG-NPKIKPTEVFHPEDEYLINHPAY  201 (352)
T ss_pred             EEECCCCc--EEEEEeCCCCcEEEEecCCccEEEe--ec-----CceEEEEecCCC-ceEEeeeeeecCCccccccCCce
Confidence            99998744  3334444432222222211111111  11     111111121110 11111222222111000    1 


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce------eeeecC------CCCCeEEEEECcCCCEEEEEE-c
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR------KEGPVHDVQWSYSGSEFAVVY-G  215 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~------~~~~i~~v~wspdg~~~av~~-g  215 (434)
                      +..+|+++.+...             ..++.++..+...      ..++..      ..+.+.-++++|+|+++.|.. +
T Consensus       202 ~~~dg~~~~vs~e-------------G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~  268 (352)
T TIGR02658       202 SNKSGRLVWPTYT-------------GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQ  268 (352)
T ss_pred             EcCCCcEEEEecC-------------CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecC
Confidence            2337776544311             1355555322110      111111      123445599999999998842 2


Q ss_pred             c------CC-CeEEEEeccccee-EEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          216 F------MP-ASATIFNKKCRPI-LELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       216 ~------~~-~~v~l~d~~~~~~-~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      .      ++ +.|.++|.+...+ ..+. ......|++||||+ +|++...  ..+.|.++|..+++.+..+
T Consensus       269 ~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       269 RAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST--GDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeEEeee
Confidence            1      11 3899999976554 4443 45677899999999 6665543  2478999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.7e-10  Score=110.53  Aligned_cols=247  Identities=11%  Similarity=0.097  Sum_probs=155.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--------CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--------GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEI   72 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--------g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i   72 (434)
                      |+++.|.|-...|+|++     +|+.|++|++..        -+.+.+|..+.   ..|.|+..++++.++.++ .|++|
T Consensus       297 ir~l~~~~sep~lit~s-----ed~~lk~WnLqk~~~s~~~~~epi~tfraH~---gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITAS-----EDGTLKLWNLQKAKKSAEKDVEPILTFRAHE---GPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             hhhhhcCCCCCeEEEec-----cccchhhhhhcccCCccccceeeeEEEeccc---CceEEEEecCCceEEEeeccCcee
Confidence            67889999999999999     999999999921        24567776654   788899999999999998 58999


Q ss_pred             EEEeCCCCC----------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           73 QFFDTTDFP----------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        73 ~v~~~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      +.|+++...          .......|.+.|..+++|+..+.++.+      ..++++++|....   ..+ ++...-+.
T Consensus       369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc------s~DgTvr~w~~~~---~~~-~~f~~~~e  438 (577)
T KOG0642|consen  369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC------SSDGTVRLWEPTE---ESP-CTFGEPKE  438 (577)
T ss_pred             eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee------cCCceEEeeccCC---cCc-cccCCccc
Confidence            999764211          012234566778899999985554432      5678999999876   333 21111111


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-----c-CCCCCeEEEEECcCCCEEEEEEcc
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-----L-RKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-----l-~~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      ....+...-.+..++.+..   +...    +...++.+++... ...+.     - .....+.-+.|+|.+...+  ++.
T Consensus       439 ~g~Plsvd~~ss~~a~~~~---s~~~----~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~--~~h  508 (577)
T KOG0642|consen  439 HGYPLSVDRTSSRPAHSLA---SFRF----GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITF--TAH  508 (577)
T ss_pred             cCCcceEeeccchhHhhhh---hccc----ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeE--ecc
Confidence            1111211111111111100   0000    1111121111110 00000     0 0124577899999886555  577


Q ss_pred             CCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          217 MPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       217 ~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      .+..|++||.+ +..+++.  |...++++++-|+|-+|+++.   .+|.+.+|.+....++.....
T Consensus       509 ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s---~d~sv~l~kld~k~~~~es~~  571 (577)
T KOG0642|consen  509 EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGS---HDGSVRLWKLDVKTCVLESTA  571 (577)
T ss_pred             cCCceecccccccccchheeeccceecceeecCCCceEEeec---CCceeehhhccchheeecccc
Confidence            88999999986 5555554  788899999999999999998   556999999877655554433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.24  E-value=9.6e-08  Score=87.70  Aligned_cols=270  Identities=16%  Similarity=0.207  Sum_probs=154.4

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec----CCeEEEEeCCCC--CCceeeeeec--CCeeE
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA----TNEIQFFDTTDF--PKGILYRLRV--PGVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~----~~~i~v~~~~~~--~~~~~~~~~~--~~v~~   95 (434)
                      +.+.|.+|++.+.+--.+..+.-.......-+.|+++++.|.++.    .+.|-.|.++..  ......+...  ..-..
T Consensus        14 ~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~y   93 (346)
T COG2706          14 ESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCY   93 (346)
T ss_pred             CCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeE
Confidence            567899999863321111111111124455789999999888872    357777777642  2111111111  23356


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc----------eeEEEECCCCCeEEEEEEeccc
Q 013871           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS----------TVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~----------~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      +++++++ .++.+..    -..+.|.++.+.....-....+...+...          .-...+.|+|++|++.. -   
T Consensus        94 vsvd~~g-~~vf~An----Y~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D-L---  164 (346)
T COG2706          94 VSVDEDG-RFVFVAN----YHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD-L---  164 (346)
T ss_pred             EEECCCC-CEEEEEE----ccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee-c---
Confidence            7777773 3332211    11256777777543111112122222211          44567899999987641 1   


Q ss_pred             ccCceeecceeEEEEeeCCcceeee--ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe-------
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL-------  234 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~-------  234 (434)
                      ++.+.     .+|.++ +|......  .+.....-..+.|+|+++...++ ..-+++|.+|....  ..+..+       
T Consensus       165 G~Dri-----~~y~~~-dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP  237 (346)
T COG2706         165 GTDRI-----FLYDLD-DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLP  237 (346)
T ss_pred             CCceE-----EEEEcc-cCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence            11121     234443 33221111  12234455789999999877775 56678999987643  222221       


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEe--eCCCceEEEECCCCCEEEEEEcCCcee
Q 013871          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       235 ----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~--~~~~~~~~~wspdg~~l~tas~~prl~  304 (434)
                          +....-.|..+|||++|.++..+.  ..|.+|-+.  +++  .+...  .+...-.+.++|+|++|+++...    
T Consensus       238 ~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~----  311 (346)
T COG2706         238 EDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK----  311 (346)
T ss_pred             cccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC----
Confidence                234456799999999999987764  267777665  343  22222  23356679999999999999884    


Q ss_pred             eCCcEEEEeecC
Q 013871          305 IDNGIKIFHHNG  316 (434)
Q Consensus       305 ~D~~i~iw~~~g  316 (434)
                       ++.|.+|..+.
T Consensus       312 -sd~i~vf~~d~  322 (346)
T COG2706         312 -SDNITVFERDK  322 (346)
T ss_pred             -CCcEEEEEEcC
Confidence             56799998843

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.23  E-value=1.4e-08  Score=98.34  Aligned_cols=274  Identities=12%  Similarity=0.131  Sum_probs=156.0

Q ss_pred             cCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871            8 LRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         8 SP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      ||||+|++.......    +..+.+.|+|+.+++........    .....+.|||||+++|...++.|.+.+.....  
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~----~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~--   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP----PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ--   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE----TTBSEEEE-SSSTEEEEEETTEEEEESSTTSE--
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc----cccccceeecCCCeeEEEecCceEEEECCCCC--
Confidence            899999997542111    12367999999998754433221    34447899999999999999999999875531  


Q ss_pred             eeeeee--------------------cCCeeEEEEeCCCCCeEEEEecCCC-----------------------------
Q 013871           84 ILYRLR--------------------VPGVAAFEVSKAPGSHVAVFVPESK-----------------------------  114 (434)
Q Consensus        84 ~~~~~~--------------------~~~v~~~~~sp~~~~~ia~~~~~~~-----------------------------  114 (434)
                       ..++.                    +..-..+-|||+ +..|+++.-+..                             
T Consensus        75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd-~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD-SKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT-SSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             -eEEeccccceeEEcCccceeccccccccccceEECCC-CCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence             12222                    223456889999 556655422110                             


Q ss_pred             CCCc--eEEEEEcCCCCCCCc--eeee---eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce
Q 013871          115 GSPA--SVQIYACGKDLQSQP--LARR---SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE  187 (434)
Q Consensus       115 ~~~~--~v~i~~~~~~~~~~~--i~~~---~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~  187 (434)
                      ....  .+.++++.+   ++.  +...   .........+.|.+++..+++.... .++..      ..+..++...+..
T Consensus       153 ~~np~v~l~v~~~~~---~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n-R~q~~------~~l~~~d~~tg~~  222 (353)
T PF00930_consen  153 DPNPRVSLFVVDLAS---GKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN-RDQNR------LDLVLCDASTGET  222 (353)
T ss_dssp             S---EEEEEEEESSS---TCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE-TTSTE------EEEEEEEECTTTC
T ss_pred             CcCCceEEEEEECCC---CcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc-cCCCE------EEEEEEECCCCce
Confidence            0101  334455544   221  1111   0112334678999999866665432 22221      1245555533222


Q ss_pred             ee-eecCCCCCe---EEEEEC-cCCCEEEEEEccCCC--eEEEEecccceeEEeC--CcCee-EEEECCCCCeEEEEecC
Q 013871          188 GL-VPLRKEGPV---HDVQWS-YSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYN-TVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       188 ~~-v~l~~~~~i---~~v~ws-pdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~--~~~~~-~i~~SP~g~~l~~~~~~  257 (434)
                      .. ..-...+-|   ..+.|. +++..|+.++- .++  .|.+++..+.....+.  .-.|+ -+.|+++++.|...+..
T Consensus       223 ~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  223 RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             eEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecC
Confidence            11 111112222   356665 88988888765 566  6777788877766664  34454 47899999877665543


Q ss_pred             C--CCCeEEEEEcc-CCEEEEEeeCCCce-EEEECCCCCEEEEEEcC
Q 013871          258 N--LPGDMAFWDYV-DGKQLGTTRAECSV-TSEWSPDGRYFMTATTA  300 (434)
Q Consensus       258 ~--~~g~i~iwd~~-~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~  300 (434)
                      .  ....|+..+++ .++........... .+.|||||++++...+.
T Consensus       302 ~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  302 DNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             GGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred             CCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence            2  24467777787 66555444443333 79999999999987764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-09  Score=98.98  Aligned_cols=264  Identities=14%  Similarity=0.228  Sum_probs=154.9

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC---CcE-EE-EEeecCcC---------CCCCCeeeecCCCc---E
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET---GEA-VY-QLFQKNMT---------KTTWPSIRFSSDEA---V   63 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~-~~-~~~~~~~~---------~~~~~~~~~S~d~~---~   63 (434)
                      +|.++.|...|.+|+|+.     .++.|.++.-..   |+- .+ .|+.+...         .+.+..+.|-+++.   +
T Consensus        27 iis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             ceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            588999999999999988     778888885322   211 22 22222110         13456788988775   4


Q ss_pred             EEEecCCeEEEEeCCCCCCce-eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC----ceee--
Q 013871           64 ACRMATNEIQFFDTTDFPKGI-LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ----PLAR--  136 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~~~-~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~----~i~~--  136 (434)
                      |++..+.+|++|.+....... ...+..+                       +.++.+.-..+|...+..    ....  
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~-----------------------~~~~~~~~lr~p~~~~~~~~vea~prRv  158 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEE-----------------------GPPGTITSLRLPVEGRHDLEVEASPRRV  158 (433)
T ss_pred             EEecCCcceeeeeeecccccccccccccc-----------------------CCCCccceeeceeeccccceeeeeeeee
Confidence            555567799999987633211 0000000                       011111111111110000    0001  


Q ss_pred             -eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC------CCCeEEEEECcCCCE
Q 013871          137 -RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSE  209 (434)
Q Consensus       137 -~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~v~wspdg~~  209 (434)
                       ...|...+.++..|.|+...+..    .|..       .+||.+++....-.+|.+..      ..-|.+..|+|....
T Consensus       159 ~aNaHtyhiNSIS~NsD~Et~lSA----DdLR-------INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn  227 (433)
T KOG1354|consen  159 YANAHTYHINSISVNSDKETFLSA----DDLR-------INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN  227 (433)
T ss_pred             ccccceeEeeeeeecCccceEeec----ccee-------eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence             12244456678888888875432    1211       24566655443333443321      346788999996544


Q ss_pred             EEEEEccCCCeEEEEecccceeE-------EeC------------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-
Q 013871          210 FAVVYGFMPASATIFNKKCRPIL-------ELG------------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-  269 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~~~~~~-------~~~------------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-  269 (434)
                      +.+ |.+.-|.|+|.|++...+-       ...            ...|..+.||+.|+|+++-.+-    +|.+||++ 
T Consensus       228 ~f~-YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~nm  302 (433)
T KOG1354|consen  228 VFV-YSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLNM  302 (433)
T ss_pred             EEE-EecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEeccc
Confidence            443 5677889999999833321       111            1345679999999999986542    79999985 


Q ss_pred             CCEEEEEeeCC--------------Cc---eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          270 DGKQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       270 ~~~~i~~~~~~--------------~~---~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..+.+.+++-|              ++   ..|+||-++.+++||+.      .|-+++++.
T Consensus       303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy------~n~frvf~~  358 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY------NNVFRVFNL  358 (433)
T ss_pred             cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc------cceEEEecC
Confidence            33444444332              12   23899999999999999      999999995

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=6.6e-10  Score=103.11  Aligned_cols=192  Identities=15%  Similarity=0.244  Sum_probs=129.0

Q ss_pred             eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec
Q 013871           94 AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG  173 (434)
Q Consensus        94 ~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g  173 (434)
                      ..++++++ +..+++     ++.++.+|+|+.|+   ...+.....+..++-.+.|+|||+.|+.+.   .| ....|  
T Consensus       148 k~vaf~~~-gs~lat-----gg~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW--  212 (398)
T KOG0771|consen  148 KVVAFNGD-GSKLAT-----GGTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVW--  212 (398)
T ss_pred             eEEEEcCC-CCEeee-----ccccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEE--
Confidence            44566665 455553     57889999999998   677777777888999999999999877653   22 22222  


Q ss_pred             ceeEEEEeeCCc-cee-eeecCCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEecc---c-c--eeEEe--CCcCee
Q 013871          174 ESKLNYLTTDGT-HEG-LVPLRKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-R--PILEL--GSGPYN  240 (434)
Q Consensus       174 ~~~l~~l~~~~~-~~~-~v~l~~~~~i~~v~wspdg---~~~av~~g~~~~~v~l~d~~---~-~--~~~~~--~~~~~~  240 (434)
                             ++..+ .-. .-+.+++.....+.|+-|+   ..++......-+.+..+|+.   . +  ...+.  ....+.
T Consensus       213 -------~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siS  285 (398)
T KOG0771|consen  213 -------SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSIS  285 (398)
T ss_pred             -------EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcce
Confidence                   22221 111 1113334556677888766   22222222223355555542   1 1  11111  345789


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       241 ~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +++.|++|+++++|+   ++|.|.|++..+.+++.... +|  .++.++|+||.+++++.+.      |+.+.|..+..
T Consensus       286 sl~VS~dGkf~AlGT---~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v  355 (398)
T KOG0771|consen  286 SLAVSDDGKFLALGT---MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV  355 (398)
T ss_pred             eEEEcCCCcEEEEec---cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence            999999999999999   67899999999988776654 34  5566999999999999777      99999988865

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.22  E-value=8.3e-09  Score=99.82  Aligned_cols=296  Identities=15%  Similarity=0.186  Sum_probs=162.6

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      +++++..++    .++.|.|.|..+.+.+..+....   ..-..+.|++||+++.... ++.|.++|+.+..  ...++.
T Consensus         5 ~~l~~V~~~----~~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~i~   75 (369)
T PF02239_consen    5 GNLFYVVER----GSGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVATIK   75 (369)
T ss_dssp             GGEEEEEEG----GGTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEEEE
T ss_pred             ccEEEEEec----CCCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEEEe
Confidence            345544442    57899999999999999987642   2111468999999887764 6899999998865  334444


Q ss_pred             c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-------cceeEEEECCCCCeEEEEEE
Q 013871           90 V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        90 ~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~  161 (434)
                      . ....++++||++. ++++-    ...++.+.++|..+   .+++.......       ...+.+.-++.+...++.  
T Consensus        76 ~G~~~~~i~~s~DG~-~~~v~----n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~--  145 (369)
T PF02239_consen   76 VGGNPRGIAVSPDGK-YVYVA----NYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN--  145 (369)
T ss_dssp             -SSEEEEEEE--TTT-EEEEE----EEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE--
T ss_pred             cCCCcceEEEcCCCC-EEEEE----ecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEE--
Confidence            3 3567899999954 44321    12345899999877   56665554332       123455556666543322  


Q ss_pred             ecccccCceeecceeEEEEeeCCccee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--C--
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--G--  235 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~--  235 (434)
                        ...++       .++.++....... ...+......++..|+|++++|++. .....++-++|.+...+. .+  +  
T Consensus       146 --lkd~~-------~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~~~sn~i~viD~~~~k~v~~i~~g~~  215 (369)
T PF02239_consen  146 --LKDTG-------EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-ANGSNKIAVIDTKTGKLVALIDTGKK  215 (369)
T ss_dssp             --ETTTT-------EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-EGGGTEEEEEETTTTEEEEEEE-SSS
T ss_pred             --EccCC-------eEEEEEeccccccceeeecccccccccccCcccceeeec-ccccceeEEEeeccceEEEEeecccc
Confidence              11122       3555553332111 1122235678999999999999874 444569999998754433 22  1  


Q ss_pred             --CcCee-------EEEECC--CCCeE-EEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc-CC
Q 013871          236 --SGPYN-------TVRWNP--KGKFL-CLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT-AP  301 (434)
Q Consensus       236 --~~~~~-------~i~~SP--~g~~l-~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~-~p  301 (434)
                        ..+..       ...|.-  .+.+. ...+.    ..+.+||..+.+.+..+... ....+.-+||++++.+... .|
T Consensus       216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~----~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~  291 (369)
T PF02239_consen  216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT----DPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNP  291 (369)
T ss_dssp             BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE------TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-S
T ss_pred             ccccccccccCCCcceEEeeccccceecccccC----CccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCC
Confidence              11111       122322  22222 22222    24667888889888888754 3356899999999999822 22


Q ss_pred             ceeeCCcEEEEeecCce-eeeee-ccc--ceeeEEEcCCCCCCCC
Q 013871          302 RLQIDNGIKIFHHNGSL-FFKKM-FDK--LFQAEWKPVSPDKFGD  342 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~~-~~~~~-~~~--~~~~~w~p~~~~~~~~  342 (434)
                      .   .+.|.|+|..... +.... ...  +.++.|.|++..++-+
T Consensus       292 ~---~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  292 D---ADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             S---HT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             C---CceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence            2   6899999986643 33321 123  7788888888876654

...

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=1.8e-09  Score=103.69  Aligned_cols=271  Identities=14%  Similarity=0.174  Sum_probs=165.8

Q ss_pred             CcEEEEEcCCCcEEEEEeec--------C-------------cCCCCCCeeeecCCCcEEEEecC--CeEEEEeCCCCCC
Q 013871           26 KNVILWKTETGEAVYQLFQK--------N-------------MTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTTDFPK   82 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~--------~-------------~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~~~~~   82 (434)
                      +.|+||++..|+.+..+...        +             .....-+.+.-||||+||...+.  -.|++||+.+.+.
T Consensus         7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL   86 (703)
T KOG2321|consen    7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL   86 (703)
T ss_pred             CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEccccee
Confidence            56888888777654433220        0             01233447889999999876643  4999999998776


Q ss_pred             ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE---------EcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY---------ACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~---------~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      .....+..+.|...-+|-| -..+++..-     +..|.+.         .+|.+            .   ..|+.+.-.
T Consensus        87 KFERhlDae~V~feiLsDD-~SK~v~L~~-----DR~IefHak~G~hy~~RIP~~------------G---RDm~y~~~s  145 (703)
T KOG2321|consen   87 KFERHLDAEVVDFEILSDD-YSKSVFLQN-----DRTIEFHAKYGRHYRTRIPKF------------G---RDMKYHKPS  145 (703)
T ss_pred             eeeecccccceeEEEeccc-hhhheEeec-----CceeeehhhcCeeeeeecCcC------------C---ccccccCCC
Confidence            5544555555555555544 111211111     1122221         12221            1   123333333


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL  232 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~  232 (434)
                      .-|++.++.            ..+|.+++..+ .-..++.. .++++.+..++-...|+  +|..++.+.+||.++....
T Consensus       146 cDly~~gsg------------~evYRlNLEqG-rfL~P~~~~~~~lN~v~in~~hgLla--~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  146 CDLYLVGSG------------SEVYRLNLEQG-RFLNPFETDSGELNVVSINEEHGLLA--CGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             ccEEEeecC------------cceEEEEcccc-ccccccccccccceeeeecCccceEE--ecccCceEEEecchhhhhh
Confidence            334443322            13677776554 23334443 48899999998777777  5888999999999765432


Q ss_pred             E-e--------CC-----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCC--CE
Q 013871          233 E-L--------GS-----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDG--RY  293 (434)
Q Consensus       233 ~-~--------~~-----~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg--~~  293 (434)
                      . +        +.     ..++++.|+.+|-.+++|.   ..|.++|||++..+.+..-.+.   .+..+.|-+.+  ..
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~  287 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK  287 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCce
Confidence            1 1        11     2388999999999999998   6689999999988766554443   44558997763  34


Q ss_pred             EEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEcCCCCCCCC
Q 013871          294 FMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       294 l~tas~~prl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +++..       ...++|||- +|+.+... +...+..++.-|..-.+|.+
T Consensus       288 v~S~D-------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  288 VVSMD-------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             EEecc-------hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence            44432       568999996 67665544 44568888888876555443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.20  E-value=9.1e-11  Score=111.65  Aligned_cols=130  Identities=19%  Similarity=0.456  Sum_probs=99.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-----c------------------------ceeE--EeCCcCeeEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----C------------------------RPIL--ELGSGPYNTVR  243 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-----~------------------------~~~~--~~~~~~~~~i~  243 (434)
                      ...|.++.|-|.+..++++ ...++.+++||..     .                        +++.  .+..+.+|.++
T Consensus       219 ktsvT~ikWvpg~~~~Fl~-a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLV-AHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             ccceEEEEEEeCCCceEEE-EEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            4688999999966554442 4556788888642     0                        1111  12467889999


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee
Q 013871          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF  320 (434)
Q Consensus       244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~  320 (434)
                      |||||++||+.+   .||.++|||..+.+++...+..  ...+++|||||+||+|++.      |.-|.||.+..+ ++.
T Consensus       298 FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE------DDLVtVwSf~erRVVA  368 (636)
T KOG2394|consen  298 FSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE------DDLVTVWSFEERRVVA  368 (636)
T ss_pred             EcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC------cceEEEEEeccceEEE
Confidence            999999999999   7789999999998887776653  6778999999999999999      999999999655 444


Q ss_pred             ee--ecccceeeEEEc
Q 013871          321 KK--MFDKLFQAEWKP  334 (434)
Q Consensus       321 ~~--~~~~~~~~~w~p  334 (434)
                      ..  +..=+..|+|.|
T Consensus       369 RGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  369 RGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccccccceeeEeecc
Confidence            32  445577888887

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.18  E-value=4e-10  Score=101.32  Aligned_cols=226  Identities=11%  Similarity=0.122  Sum_probs=130.6

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      |..|.|.|+. ++|++++     +|..|++|++.++.++.-|.+-..|...+.++.|+.||.+++++ .|.+|++|+++.
T Consensus       138 INeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  138 INEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             chhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            5678899976 6888888     89999999999999999988877788999999999999999987 577999999985


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE------ECCCC
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN------WNRGS  153 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~------ws~~G  153 (434)
                      .+..    -+++  .++.|+|++...-  | |.     -.+.+.+..         +...|...+-++.      .|..+
T Consensus       213 ~~f~----~~lE--~s~~~~~~~t~~p--f-pt-----~~~~fp~fs---------t~diHrnyVDCvrw~gd~ilSksc  269 (385)
T KOG1034|consen  213 KEFK----NKLE--LSITYSPNKTTRP--F-PT-----PKTHFPDFS---------TTDIHRNYVDCVRWFGDFILSKSC  269 (385)
T ss_pred             hHHh----hhhh--hhcccCCCCccCc--C-Cc-----ccccccccc---------ccccccchHHHHHHHhhheeeccc
Confidence            3211    1111  1245566531100  0 00     001111110         1111211111111      22222


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEe-eCCcc--eeeeecCCCCCeEEE--EECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLT-TDGTH--EGLVPLRKEGPVHDV--QWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~-~~~~~--~~~v~l~~~~~i~~v--~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      ..-++++...  +...      .++.+. ..+..  ...+.++ ...|.-+  +|.|-++.+|  .|...+++.+||++.
T Consensus       270 enaI~~w~pg--kl~e------~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la--~gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  270 ENAIVCWKPG--KLEE------SIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLA--LGNQSGKVYVWDLDN  338 (385)
T ss_pred             CceEEEEecc--hhhh------hhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHh--hccCCCcEEEEECCC
Confidence            2122222110  0000      011000 00000  0011111 3455544  4556667777  488899999999974


Q ss_pred             cee-------EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          229 RPI-------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       229 ~~~-------~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..-       +......|.+.+||-||.+|++..   .+|+|.-||.-
T Consensus       339 ~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc---dd~~Vwrwdrv  383 (385)
T KOG1034|consen  339 NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC---DDGTVWRWDRV  383 (385)
T ss_pred             CCCccCceEEeccccceeeeeeecccCcEEEEEe---CCCcEEEEEee
Confidence            332       222456788899999999998887   66899999864

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.4e-08  Score=93.47  Aligned_cols=213  Identities=17%  Similarity=0.235  Sum_probs=141.9

Q ss_pred             CCcEEEEecCCeEEEEeCCCCCC--ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCce
Q 013871           60 DEAVACRMATNEIQFFDTTDFPK--GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPL  134 (434)
Q Consensus        60 d~~~la~~~~~~i~v~~~~~~~~--~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i  134 (434)
                      ||.++.+..+|.+++|.......  .....+. .+++..+.-+|....++|+     +|..  ..+.||++..   .+++
T Consensus       115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~-----GGke~~n~lkiwdle~---~~qi  186 (412)
T KOG3881|consen  115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT-----GGKENINELKIWDLEQ---SKQI  186 (412)
T ss_pred             CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec-----Cchhcccceeeeeccc---ceee
Confidence            78888888889999999875331  1112222 3466667667764444442     4444  6788899865   2211


Q ss_pred             eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC--CCEEEE
Q 013871          135 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS--GSEFAV  212 (434)
Q Consensus       135 ~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd--g~~~av  212 (434)
                      -+     +.      |+..++|                              .-++    .--+.++.|-|.  ...|+.
T Consensus       187 w~-----aK------NvpnD~L------------------------------~LrV----PvW~tdi~Fl~g~~~~~fat  221 (412)
T KOG3881|consen  187 WS-----AK------NVPNDRL------------------------------GLRV----PVWITDIRFLEGSPNYKFAT  221 (412)
T ss_pred             ee-----cc------CCCCccc------------------------------ccee----eeeeccceecCCCCCceEEE
Confidence            10     00      1111111                              0011    113346667666  667775


Q ss_pred             EEccCCCeEEEEecc--cceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEE
Q 013871          213 VYGFMPASATIFNKK--CRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTS  285 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~--~~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~  285 (434)
                      +  ..-+.+++||.+  -.++.+  +...++.++..-|.|++|++|.   ..|.|..||++.++.+.. +.+-  .+..+
T Consensus       222 ~--T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  222 I--TRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             E--ecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCceeeccccCCccCCcceE
Confidence            4  445699999996  345544  4688999999999999999887   668999999999998877 4442  66679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeec-ccceeeEEEcCC
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMF-DKLFQAEWKPVS  336 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~-~~~~~~~w~p~~  336 (434)
                      .-+|.++++++++.      |+-+||+|... +++++... ..+..+..++.-
T Consensus       297 h~hp~~~~las~GL------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~  343 (412)
T KOG3881|consen  297 HCHPTHPVLASCGL------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV  343 (412)
T ss_pred             EEcCCCceEEeecc------ceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence            99999999999999      99999999977 45555433 466666666653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.18  E-value=1.1e-09  Score=98.14  Aligned_cols=235  Identities=13%  Similarity=0.169  Sum_probs=161.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc------CC------------------------------C----cEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT------ET------------------------------G----EAVYQ   41 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~------~~------------------------------g----~~~~~   41 (434)
                      |.+|.|++.|..++|.+     .|++.+||..      ..                              |    .++..
T Consensus       193 VNsikfh~s~~L~lTaS-----GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  193 VNSIKFHNSGLLLLTAS-----GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             eeeEEeccccceEEEcc-----CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            68999999999999988     6777777751      00                              0    01233


Q ss_pred             EeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871           42 LFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        42 ~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      |.+   |...+.+..|-..|+.+++++ |.+-.+||+...+.......|....+.++-+|. ..++..     ...+.+.
T Consensus       268 ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt-QrLVvT-----sSrDtTF  338 (481)
T KOG0300|consen  268 LTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT-QRLVVT-----SSRDTTF  338 (481)
T ss_pred             eec---cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCc-ceEEEE-----eccCcee
Confidence            333   335555778888899888885 679999999987765556666666777777776 233332     2445689


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      ++|++...  -+.+.....|...+.+..|+-+.+    +.+...|.+.+.|       .+  ........++....+++.
T Consensus       339 RLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd~----vVSgSDDrTvKvW-------dL--rNMRsplATIRtdS~~NR  403 (481)
T KOG0300|consen  339 RLWDFREA--IQSVAVFQGHTDTVTSVVFNTDDR----VVSGSDDRTVKVW-------DL--RNMRSPLATIRTDSPANR  403 (481)
T ss_pred             Eeccchhh--cceeeeecccccceeEEEEecCCc----eeecCCCceEEEe-------ee--ccccCcceeeecCCccce
Confidence            99998642  455666777888888899988766    3344466666643       33  222233344445789999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecccceeEEe-------CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEEccC
Q 013871          201 VQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-------GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-------~~~~~~~i~~SP~g--~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ++.+..+..+++  .-.+..|+|||+.++-+..+       |..-+.|++|+.+-  ..|+++|||.   .+.=|.+..
T Consensus       404 vavs~g~~iIAi--PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR---~v~gW~in~  477 (481)
T KOG0300|consen  404 VAVSKGHPIIAI--PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDR---MVAGWKINT  477 (481)
T ss_pred             eEeecCCceEEe--ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccc---eeeeeEecc
Confidence            999987777775  44456999999988765544       55667899997654  3677788775   777787653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.18  E-value=3.9e-09  Score=102.58  Aligned_cols=240  Identities=15%  Similarity=0.178  Sum_probs=144.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEE--EeecCcCCCCCCeeeecCCCc-EEEEe-cCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQ--LFQKNMTKTTWPSIRFSSDEA-VACRM-ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~--~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~i~v~~~   77 (434)
                      |..+.|-|....|++.+     .|.++++||+++++++..  +.++   ...+.+++|.+++. .|+++ -|++|.|||+
T Consensus       103 ifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH---~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen  103 IFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGH---TGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             eEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeeccc---ccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            55678889777888888     899999999999988766  5554   47888999999765 66666 4789999997


Q ss_pred             CCCCC---------------c-------eeeeee-----cCCeeE---EEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           78 TDFPK---------------G-------ILYRLR-----VPGVAA---FEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        78 ~~~~~---------------~-------~~~~~~-----~~~v~~---~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .....               .       ...+.+     ...|.+   +.+.-| +.+|+.    .+..++.|++||+..
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkD-e~tlaS----aga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKD-ESTLAS----AGAADSTIKVWDLRK  249 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEec-cceeee----ccCCCcceEEEeecc
Confidence            32110               0       000000     001222   222333 223321    134588999999975


Q ss_pred             CC---CCCceeeeeec-----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE
Q 013871          128 DL---QSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH  199 (434)
Q Consensus       128 ~~---~~~~i~~~~~~-----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~  199 (434)
                      ..   ..++.....++     ....+.+.....|++|++-+.   |.         .||.+++.+.....+.+-....+.
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~---------sIy~ynm~s~s~sP~~~~sg~~~~  317 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DN---------SIYFYNMRSLSISPVAEFSGKLNS  317 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CC---------cEEEEeccccCcCchhhccCcccc
Confidence            21   12233222222     234566777778888866542   32         345554444322222111111111


Q ss_pred             ----EEEECcCCCEEEEEEccCCCeEEEEecccce----eEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013871          200 ----DVQWSYSGSEFAVVYGFMPASATIFNKKCRP----ILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       200 ----~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~  270 (434)
                          .-..+||+.+++  +|..|..+++|.+..-.    +...|...+.+++|.|..- -+++++.   |..+.||++.+
T Consensus       318 sf~vks~lSpd~~~l~--SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd---D~~~kiW~l~~  392 (720)
T KOG0321|consen  318 SFYVKSELSPDDCSLL--SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD---DFRVKIWRLSN  392 (720)
T ss_pred             eeeeeeecCCCCceEe--ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc---CcceEEEeccC
Confidence                235689998888  79999999999885321    2223778899999988543 4455563   45999999875


Q ss_pred             C
Q 013871          271 G  271 (434)
Q Consensus       271 ~  271 (434)
                      +
T Consensus       393 ~  393 (720)
T KOG0321|consen  393 G  393 (720)
T ss_pred             c
Confidence            4

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.16  E-value=6e-09  Score=104.13  Aligned_cols=244  Identities=15%  Similarity=0.112  Sum_probs=144.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEe-ecCcCCCCCCeeeecCCC---cEEEEecCCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLF-QKNMTKTTWPSIRFSSDE---AVACRMATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~-~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~   75 (434)
                      |.|+.|+|....|+.++-    .+|.|.+||+..+..  ...+. ....|...+..+.|..+.   .++..+.||.|..|
T Consensus       245 v~~~~f~p~~p~ll~gG~----y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  245 VTCLKFCPFDPNLLAGGC----YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             eeEEEeccCCcceEEeec----cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            789999997766665542    689999999987654  21111 111244666688897644   35555579999999


Q ss_pred             eCCCCCCcee-----eee-------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEE---EEcCCC--CCCCceeeee
Q 013871           76 DTTDFPKGIL-----YRL-------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQI---YACGKD--LQSQPLARRS  138 (434)
Q Consensus        76 ~~~~~~~~~~-----~~~-------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i---~~~~~~--~~~~~i~~~~  138 (434)
                      ++........     ...       ...++..++|.|.....+.+-..     .|.|.-   ..+...  ...+.+....
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe-----~G~v~~~~r~g~~~~~~~~~~~~~~~~  395 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTE-----EGKVYKGCRKGYTPAPEVSYKGHSTFI  395 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcC-----CcEEEEEeccCCccccccccccccccc
Confidence            9865432110     011       12357888888874443322111     122221   111110  0012233445


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccC
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~  217 (434)
                      .|...+..+.+||=+..+...+   .|=+.+.       |.-..  .......+. ....|++++|||.-.-+.+ ++.+
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~---gDW~vri-------Ws~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~-~~d~  462 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSV---GDWTVRI-------WSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFA-TVDG  462 (555)
T ss_pred             ccCcceEeeecCCCccceeeee---ccceeEe-------ccccC--CCCcchhhhhccceeeeeEEcCcCceEEE-EEcC
Confidence            5677888899999877654332   1323322       22110  111111222 2345999999997654444 5788


Q ss_pred             CCeEEEEecc---cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          218 PASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       218 ~~~v~l~d~~---~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +|.+.+||+.   ..++.+.  +....+.+.|++.|++|++|.   ..|++.+|++..
T Consensus       463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd---~~G~~~~~~l~~  517 (555)
T KOG1587|consen  463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD---ANGTTHILKLSE  517 (555)
T ss_pred             CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec---CCCcEEEEEcCc
Confidence            9999999984   3344332  456667899999999999998   678999999863

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=2.1e-09  Score=103.73  Aligned_cols=234  Identities=15%  Similarity=0.160  Sum_probs=157.5

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      .+.|...|.+++..|. +..++     +++.+|+|+||.+.+   +.++....+- ..+.++.|+|.+..-++.+..+..
T Consensus       396 yrGHtg~Vr~iSvdp~-G~wla-----sGsdDGtvriWEi~T---gRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPS-GEWLA-----SGSDDGTVRIWEIAT---GRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             EeccCCeEEEEEecCC-cceee-----ecCCCCcEEEEEeec---ceEEEEEeec-ceeEEEEecCCCCceeEEEEecCc
Confidence            4556667899999996 45554     578889999999998   7888877654 478899999988754444333222


Q ss_pred             c--cCceeec--------cee---------------EEEEeeC--CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          166 K--TNQSYYG--------ESK---------------LNYLTTD--GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       166 ~--~~~~~~g--------~~~---------------l~~l~~~--~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      .  .+- ..|        ...               .|.-...  ......+.+.+..+|.++.|+-.|.+|+++.+...
T Consensus       466 ~~ivnp-~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~  544 (733)
T KOG0650|consen  466 VLIVNP-IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG  544 (733)
T ss_pred             eEEeCc-cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence            0  000 011        000               0000000  00011234555778999999999999998766433


Q ss_pred             -CeEEEEeccccee---EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871          219 -ASATIFNKKCRPI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       219 -~~v~l~d~~~~~~---~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~  292 (434)
                       ..|.|+++.....   +....+.+.++.|+|.-.+|+++.-.    .|+|||+...+++..+...  .+..++.+|.|.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~----~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR----SVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD  620 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc----ceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence             3788888853322   23357888999999999999988643    6999999887665554333  566699999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecCc--eeee--eecccceeeEEEcCCCCCC
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHNGS--LFFK--KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~g~--~~~~--~~~~~~~~~~w~p~~~~~~  340 (434)
                      .|+.++.      |+.+..+|++-.  ....  .+...+..|++++.-+...
T Consensus       621 nli~gs~------d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa  666 (733)
T KOG0650|consen  621 NLILGSY------DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA  666 (733)
T ss_pred             eEEEecC------CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee
Confidence            9999999      999999998533  2222  2345678888888755433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.15  E-value=2.8e-10  Score=106.57  Aligned_cols=248  Identities=13%  Similarity=0.184  Sum_probs=161.3

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      +.+.|+.+|++|+..+     ..+.|-.+|..++.....+...    +.+..++|-.+++|+|.+-.+-+.|||...-+.
T Consensus       133 Y~~~ytrnGrhlllgG-----rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl  203 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGG-----RKGHLAAFDWVTKKLHFEINVM----ETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL  203 (545)
T ss_pred             eeeeecCCccEEEecC-----Cccceeeeecccceeeeeeehh----hhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence            3578999999999887     5688999999999987777654    667789999999999999999999999765332


Q ss_pred             ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013871           83 GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        83 ~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                       ...+- ...|..+.|-|. ..+++     +.+..+.+.--|+..   ++.+++                          
T Consensus       204 -HClk~-~~~v~rLeFLPy-HfLL~-----~~~~~G~L~Y~DVS~---GklVa~--------------------------  246 (545)
T KOG1272|consen  204 -HCLKR-HIRVARLEFLPY-HFLLV-----AASEAGFLKYQDVST---GKLVAS--------------------------  246 (545)
T ss_pred             -eehhh-cCchhhhcccch-hheee-----ecccCCceEEEeech---hhhhHH--------------------------
Confidence             11111 223555555554 11111     111122222222222   111100                          


Q ss_pred             cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCe
Q 013871          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPY  239 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~  239 (434)
                                                 +. ...|.+..+.-+|-...+.  .|...|.|.+|.-. .+++..+  |.+++
T Consensus       247 ---------------------------~~-t~~G~~~vm~qNP~NaVih--~GhsnGtVSlWSP~skePLvKiLcH~g~V  296 (545)
T KOG1272|consen  247 ---------------------------IR-TGAGRTDVMKQNPYNAVIH--LGHSNGTVSLWSPNSKEPLVKILCHRGPV  296 (545)
T ss_pred             ---------------------------HH-ccCCccchhhcCCccceEE--EcCCCceEEecCCCCcchHHHHHhcCCCc
Confidence                                       00 0145566666666554444  48888999999875 3444443  89999


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--cC
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NG  316 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~--~g  316 (434)
                      ++|++.|+|+|++++|   +|..|.|||+++...+.++.. +....+++|-.|  ++.++.      ...+.||.=  .|
T Consensus       297 ~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~------G~~v~iw~d~~~~  365 (545)
T KOG1272|consen  297 SSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSY------GDHVQIWKDALKG  365 (545)
T ss_pred             ceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCcccccccccc--ceeeec------CCeeeeehhhhcC
Confidence            9999999999999999   555999999998877766655 455668888765  444455      678899963  21


Q ss_pred             ----ceeeeee--cccceeeEEEcCCC
Q 013871          317 ----SLFFKKM--FDKLFQAEWKPVSP  337 (434)
Q Consensus       317 ----~~~~~~~--~~~~~~~~w~p~~~  337 (434)
                          ...|..+  ...+-.+.|.|...
T Consensus       366 s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  366 SGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             CCCCCcchhhhccCcccccceeccHHH
Confidence                1112111  13567777877543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=7.8e-09  Score=93.64  Aligned_cols=267  Identities=15%  Similarity=0.161  Sum_probs=159.4

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-C-cEEEE-ecCCeEEEEeCCCCCCceeeeee-cCCeeEEEEe
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-E-AVACR-MATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVS   99 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~-~~la~-~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~s   99 (434)
                      ..+.|+|||..+|+.+..|....   .....++|..+ + ..+.+ +.||+|++||+............ .++-..+.+.
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~---~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld  124 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPP---ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD  124 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCC---CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence            46899999999999999998765   33446677664 2 33333 47889999999775543222222 1112222333


Q ss_pred             CC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871          100 KA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus       100 p~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      -+ .+..+++- .+..+..+.|.+|++...  .+.+.+. .-|..++++++|.|....+++..+.|         |-.+|
T Consensus       125 ~nck~~ii~~G-tE~~~s~A~v~lwDvR~~--qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD---------GLvnl  192 (376)
T KOG1188|consen  125 LNCKKNIIACG-TELTRSDASVVLWDVRSE--QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD---------GLVNL  192 (376)
T ss_pred             ccCcCCeEEec-cccccCceEEEEEEeccc--cchhhhhhhhccCcceeEEecCCCCCeEEeeccc---------ceEEe
Confidence            22 23445443 344567789999999873  3335443 45788999999999998887765543         44445


Q ss_pred             EEEeeCCcceeee-ecCCCCCeEEEEECcCC--CEEEEEEccCCCeEEEEecc-cceeEEeCCcCe---------eE---
Q 013871          178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSG--SEFAVVYGFMPASATIFNKK-CRPILELGSGPY---------NT---  241 (434)
Q Consensus       178 ~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg--~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~---------~~---  241 (434)
                      +.+......+..+ .+.....|+.+.|..++  +.+++  . ......+|+++ +.+...+....+         ++   
T Consensus       193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl--T-H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~  269 (376)
T KOG1188|consen  193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL--T-HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYV  269 (376)
T ss_pred             eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE--E-ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence            5544333222222 22345679999999988  54443  2 24588899874 222222211100         00   


Q ss_pred             E-EECC-CCCeEEEEecCCCCCeEEEE-EccCC---EEEEEeeCC--C-ceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          242 V-RWNP-KGKFLCLAGFGNLPGDMAFW-DYVDG---KQLGTTRAE--C-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       242 i-~~SP-~g~~l~~~~~~~~~g~i~iw-d~~~~---~~i~~~~~~--~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      | ..+| ++..+++++.+...|.+... |..++   ..+..++++  . +..+.|.-.+.++.||+.      |+.+++|
T Consensus       270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE------DG~l~~W  343 (376)
T KOG1188|consen  270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE------DGLLQAW  343 (376)
T ss_pred             eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC------CceEEEE
Confidence            1 2334 44566666643322333332 33333   345555553  2 233888889999999999      9999999


Q ss_pred             ee
Q 013871          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      ..
T Consensus       344 k~  345 (376)
T KOG1188|consen  344 KV  345 (376)
T ss_pred             ec
Confidence            97

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.11  E-value=2e-10  Score=111.23  Aligned_cols=108  Identities=20%  Similarity=0.454  Sum_probs=87.2

Q ss_pred             CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeccc----------ceeEEeCCcCeeEEEECCCC-CeEEEEecCCCCCe
Q 013871          195 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGD  262 (434)
Q Consensus       195 ~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~----------~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~  262 (434)
                      ..-|.+++|.| |..++||  +..++.|.||.+..          +.+...|...|.++.|+|-. ..|++++++   -+
T Consensus       627 gt~vtDl~WdPFD~~rLAV--a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd---~T  701 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAV--ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD---ST  701 (1012)
T ss_pred             CceeeecccCCCChHHeee--cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc---ce
Confidence            34578999999 7778886  56789999997642          23455688999999999965 478888855   49


Q ss_pred             EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      |++||+.+++....+.+|  .+..++|||||+.++|.+.      |+.|++|.
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK------Dg~~rVy~  748 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK------DGTLRVYE  748 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec------CceEEEeC
Confidence            999999999988888887  6667999999999999999      55555554

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.11  E-value=9.4e-09  Score=92.41  Aligned_cols=230  Identities=11%  Similarity=0.135  Sum_probs=143.8

Q ss_pred             CCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           50 TTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      +.+.|.+|++|...+|.+-+ ++|+||......   .......|...|+.+.|+|..+.++.+      +.+..-.+|..
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc------s~drnayVw~~   84 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC------SHDRNAYVWTQ   84 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc------cCCCCcccccc
Confidence            56679999999999998855 599999986644   223344455678999999986565543      45555678887


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                      +....=.+...+--++.....+.|+|.++.+++.... .-.+.--|.+++. |-+      .+.+.......|.+++|+|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga-r~isVcy~E~ENd-WWV------sKhikkPirStv~sldWhp  156 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA-RLISVCYYEQEND-WWV------SKHIKKPIRSTVTSLDWHP  156 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCc-cEEEEEEEecccc-eeh------hhhhCCccccceeeeeccC
Confidence            5432222333333455567799999999987664211 1111111112222 111      1111112257889999999


Q ss_pred             CCCEEEEEEccCCCeEEEEec-----cc--------------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871          206 SGSEFAVVYGFMPASATIFNK-----KC--------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~-----~~--------------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~  264 (434)
                      ++-.++  .|+.|++.++|..     +.              ..+.++  ..+-+..+.|||+|..|+..+.+   +.+.
T Consensus       157 nnVLla--aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd---s~v~  231 (361)
T KOG1523|consen  157 NNVLLA--AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD---STVS  231 (361)
T ss_pred             Ccceec--ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC---CceE
Confidence            998777  6888999999853     11              112223  45678899999999999999944   5999


Q ss_pred             EEEccCCE-EEEEee-C-CCceEEEECCCCCEEEEEEc
Q 013871          265 FWDYVDGK-QLGTTR-A-ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       265 iwd~~~~~-~i~~~~-~-~~~~~~~wspdg~~l~tas~  299 (434)
                      +-|..... .+.... . -....+.|-.+.. ++.|+.
T Consensus       232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~~-vv~ag~  268 (361)
T KOG1523|consen  232 FVDAAGPSERVQSVATAQLPLLSVSWISENS-VVAAGY  268 (361)
T ss_pred             EeecCCCchhccchhhccCCceeeEeecCCc-eeecCC
Confidence            99976553 222222 1 2334467766544 444444

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=99.10  E-value=3.8e-08  Score=96.46  Aligned_cols=190  Identities=15%  Similarity=0.235  Sum_probs=125.3

Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ..+..-.|+|+ ...++++.-+.+ .+..+.++++..   ++.....+ +........|+|||+.|++....+       
T Consensus       193 ~~~~~p~ws~~-~~~~~y~~f~~~-~~~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd-------  259 (425)
T COG0823         193 SLILTPAWSPD-GKKLAYVSFELG-GCPRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD-------  259 (425)
T ss_pred             cceeccccCcC-CCceEEEEEecC-CCceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC-------
Confidence            34667789998 455554433322 226788888876   33333333 444556789999999998875433       


Q ss_pred             eecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEe--CCcCeeEEEEC
Q 013871          171 YYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWN  245 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~--~~~~~~~i~~S  245 (434)
                        |...||.++..+.....  |.. .+.-..-.|+|||+.+++++.. .+  .|.++|..+.....+  ..+....-.||
T Consensus       260 --g~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr-~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~S  334 (425)
T COG0823         260 --GSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDR-GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWS  334 (425)
T ss_pred             --CCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCC-CCCcceEEECCCCCceeEeeccCCCCcCccCC
Confidence              44568888887765333  322 3444478999999999987543 33  788888877655443  33444478999


Q ss_pred             CCCCeEEEEecCCCCCe--EEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcC
Q 013871          246 PKGKFLCLAGFGNLPGD--MAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~--i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~  300 (434)
                      |||++|+..+..  .|.  |.+.|+.++..+..+..... ....|+|+|+.|+..+..
T Consensus       335 pdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         335 PDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             CCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence            999999998732  344  77778776654444444322 237999999999998873

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=3.3e-08  Score=101.40  Aligned_cols=284  Identities=12%  Similarity=0.121  Sum_probs=166.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~~   79 (434)
                      ..+.|+|-...|++..     +...|+|||.+.++.+..|.....-...|..+.+=.  |..++.++ .||.|+||+.-.
T Consensus      1068 k~~~~hpf~p~i~~ad-----~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAAD-----DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             ceeeecCCCceeEEcC-----CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            3567888888888866     456899999999999988876644335565666532  44555555 678999998643


Q ss_pred             CC-CceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEEC-C
Q 013871           80 FP-KGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWN-R  151 (434)
Q Consensus        80 ~~-~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws-~  151 (434)
                      .. ..........++.+....+.+...+.-|.-.+     .|....|+|||...   ...+....+.. .-++.+.-+ .
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc---ceeEeecccCCCccceeeccccc
Confidence            21 11111111122222222222222222221111     24567899999965   34343333221 111222221 1


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--C--CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K--EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--~--~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~  227 (434)
                      .|+.++..   -.|.+.+       +|....... ++.+..-  +  ..+|..+.+.+.|-. -+++|+.+|.|.+||++
T Consensus      1220 ~gn~i~AG---faDGsvR-------vyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1220 HGNIIAAG---FADGSVR-------VYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CCceEEEe---ecCCceE-------EeecccCCc-cccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecc
Confidence            24444332   1344444       444332222 2222221  2  234888888887744 23379999999999998


Q ss_pred             cceeEEe-----C--Cc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------C---CCceEEEECCC
Q 013871          228 CRPILEL-----G--SG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------A---ECSVTSEWSPD  290 (434)
Q Consensus       228 ~~~~~~~-----~--~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~---~~~~~~~wspd  290 (434)
                      ......+     +  -+ ..+++..+++...+|+|+.    +.|.||++... .+..+.      +   ..+++++|+|-
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~----q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA----QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCCeeeecCc----ceEEEEecChh-hhcccccCcccccCcCCCcceeeecch
Confidence            7432221     1  14 4899999999999999873    58999998643 222221      1   25577999999


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      --.+++|..      |+.|.||..+..
T Consensus      1363 ~~llAaG~~------Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1363 RLLLAAGSA------DSTVSIYSCEKP 1383 (1387)
T ss_pred             hHhhhhccC------CceEEEeecCCc
Confidence            888888877      999999987543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.05  E-value=5e-09  Score=94.13  Aligned_cols=154  Identities=16%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013871          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL-RKEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l-~~~~~i~~v~wspdg~~~av~~  214 (434)
                      .+....+++.+||+|++.+++...+            ..++..+..+..  +..-++ ++...|..++|+|.+++++  +
T Consensus         7 ~~~~~pitchAwn~drt~iAv~~~~------------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv--t   72 (361)
T KOG1523|consen    7 HRLLEPITCHAWNSDRTQIAVSPNN------------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV--T   72 (361)
T ss_pred             eeccCceeeeeecCCCceEEeccCC------------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee--E
Confidence            3355678899999999998876432            123333333321  222223 2578999999999999998  6


Q ss_pred             ccCCCeEEEEec-c---cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC------EEEEEeeCCCc
Q 013871          215 GFMPASATIFNK-K---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS  282 (434)
Q Consensus       215 g~~~~~v~l~d~-~---~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~~i~~~~~~~~  282 (434)
                      +..|...++|.. +   -.+...+  +....+++.|+|.++.+++|+...   .|.||-.+..      +.|..--...+
T Consensus        73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccce
Confidence            888999999977 3   2333333  678889999999999999998554   8888877643      22333333466


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ++++|+|.+-.|+++++      |+..||+..
T Consensus       150 ~sldWhpnnVLlaaGs~------D~k~rVfSa  175 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGST------DGKCRVFSA  175 (361)
T ss_pred             eeeeccCCcceeccccc------CcceeEEEE
Confidence            77999999999999999      999999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.02  E-value=2.1e-07  Score=85.37  Aligned_cols=252  Identities=13%  Similarity=0.093  Sum_probs=144.2

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCee-EEEEeCCC-C
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVA-AFEVSKAP-G  103 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~-~~~~sp~~-~  103 (434)
                      +.++|.+...+..++.+...    ..+.++.++  -+.|+.+-...|.|||+.++..........++.. -+++||+. +
T Consensus        68 r~Lkv~~~Kk~~~ICe~~fp----t~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n  141 (391)
T KOG2110|consen   68 RKLKVVHFKKKTTICEIFFP----TSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN  141 (391)
T ss_pred             ceEEEEEcccCceEEEEecC----CceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCC
Confidence            56888888888877776654    344466664  4455555556699999998765433333222222 34555553 3


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      .++|+  |++ ...+.|.||++.+   -+++..+..|+....+++++++|+.|+..  ++....++.+         .+.
T Consensus       142 ~ylAy--p~s-~t~GdV~l~d~~n---l~~v~~I~aH~~~lAalafs~~G~llATA--SeKGTVIRVf---------~v~  204 (391)
T KOG2110|consen  142 CYLAY--PGS-TTSGDVVLFDTIN---LQPVNTINAHKGPLAALAFSPDGTLLATA--SEKGTVIRVF---------SVP  204 (391)
T ss_pred             ceEEe--cCC-CCCceEEEEEccc---ceeeeEEEecCCceeEEEECCCCCEEEEe--ccCceEEEEE---------EcC
Confidence            45553  332 3478999999998   78899999999999999999999986542  2221222222         111


Q ss_pred             CcceeeeecCC---CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCCcCeeEEEECCCC-CeEEEEecCCC
Q 013871          184 GTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNL  259 (434)
Q Consensus       184 ~~~~~~v~l~~---~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~  259 (434)
                      .+ +....+..   ...|++++|+||+.++++  .+...+|.+|-++........ .+   -.|.+-. .+.-.+.. -+
T Consensus       205 ~G-~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--sS~TeTVHiFKL~~~~~~~~~-~p---~~~~~~~~~~sk~~~s-yl  276 (391)
T KOG2110|consen  205 EG-QKLYEFRRGTYPVSIYSLSFSPDSQFLAA--SSNTETVHIFKLEKVSNNPPE-SP---TAGTSWFGKVSKAATS-YL  276 (391)
T ss_pred             Cc-cEeeeeeCCceeeEEEEEEECCCCCeEEE--ecCCCeEEEEEecccccCCCC-CC---CCCCcccchhhhhhhh-hc
Confidence            11 12222211   346899999999998885  344569999987644311111 00   0111100 00000000 01


Q ss_pred             C-CeEEEEEccCCEEEEEeeCCCc-eEEEEC--CCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          260 P-GDMAFWDYVDGKQLGTTRAECS-VTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       260 ~-g~i~iwd~~~~~~i~~~~~~~~-~~~~ws--pdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      . ..-.+||....--...+..... ..+.++  +...++..|+.      ||.+.++.+
T Consensus       277 ps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~------dG~~y~y~l  329 (391)
T KOG2110|consen  277 PSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY------DGHLYSYRL  329 (391)
T ss_pred             chhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc------CCeEEEEEc
Confidence            1 1223355443211222222222 235555  57889999999      999999998

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=5.4e-07  Score=80.52  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      +.++.+.||+.||..+      |..|-|=...+.  ..+....-.+...-.|+.++||||+.+||.+ +.++|+|||+..
T Consensus         1 W~~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g   74 (282)
T PF15492_consen    1 WHLALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG   74 (282)
T ss_pred             CceeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence            3578899999999877      566777665443  3344444333233679999999999999999 568999999865

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.01  E-value=2.9e-07  Score=86.99  Aligned_cols=133  Identities=11%  Similarity=0.166  Sum_probs=95.2

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCe
Q 013871           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSH  105 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~  105 (434)
                      .|-|+|..+|+. ..+.. ..  ..+-++.-++||++++.+.++ +|.++|+++......-+-...-|..+.|||+ ...
T Consensus       383 ~l~iyd~~~~e~-kr~e~-~l--g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n-sr~  457 (668)
T COG4946         383 KLGIYDKDGGEV-KRIEK-DL--GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN-SRW  457 (668)
T ss_pred             eEEEEecCCceE-EEeeC-Cc--cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC-cee
Confidence            688999887764 33322 11  556689999999999988765 9999999886643333444556999999998 678


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871          106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus       106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      +|+..|+. --...|++|++..    ..+...+...+...+-+|.|+|++|.++.....|.+..
T Consensus       458 iAYafP~g-y~tq~Iklydm~~----~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~D  516 (668)
T COG4946         458 IAYAFPEG-YYTQSIKLYDMDG----GKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSND  516 (668)
T ss_pred             EEEecCcc-eeeeeEEEEecCC----CeEEEecCCcccccCcccCCCCcEEEEEeccccCCCCC
Confidence            88877743 3345789999875    33444444555667788999999999887666555443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.00  E-value=3.6e-08  Score=86.46  Aligned_cols=262  Identities=14%  Similarity=0.153  Sum_probs=159.9

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.++.|-.+++++.....|.|++|.+.........+ .+...|..+..-|+ +..+      +.|.+..+.+|++.- 
T Consensus        15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~------tqgRd~~L~lw~ia~-   86 (323)
T KOG0322|consen   15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLD------TQGRDPLLILWTIAY-   86 (323)
T ss_pred             chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchh------hcCCCceEEEEEccC-
Confidence            66778889888886666677999999998755434444 22334666666664 2111      245666777787764 


Q ss_pred             CCCCceeeee--ecccceeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCcceeeee------cCCCCC
Q 013871          129 LQSQPLARRS--FFRCSTVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGP  197 (434)
Q Consensus       129 ~~~~~i~~~~--~~~~~~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~  197 (434)
                        ..-+...+  .....-|.+...+.++..   +..-+...|          .++..+  +.....+.      ..+.|.
T Consensus        87 --s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsd----------e~h~~D--~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   87 --SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD----------ETHKQD--GGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             --cceEEEeeeeccccccccceeccCCCcchhheecCCcccc----------hhhhhc--cCccceeEccCchhccccCc
Confidence              22222221  112222344444444422   111111011          112121  11111221      224567


Q ss_pred             eEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe------------CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          198 VHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       198 i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      +.+..|.- ++++|.++.|++++.+.+||+..+ .+.+|            |.+++.++.|.+.-..=+.++.+   -.+
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~---dkl  229 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD---DKL  229 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc---ccc
Confidence            77766543 577888889999999999999653 22222            67889999998754444445533   377


Q ss_pred             EEEEccC--C----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Ccee--eeeecccceeeEEEc
Q 013871          264 AFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKP  334 (434)
Q Consensus       264 ~iwd~~~--~----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~--~~~~~~~~~~~~w~p  334 (434)
                      ..|.++.  +    ....+++.+++..+..-||++.++||+-      |+.||||++. .+.+  .+.+...+..++|+|
T Consensus       230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW------D~RiRVyswrtl~pLAVLkyHsagvn~vAfsp  303 (323)
T KOG0322|consen  230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP  303 (323)
T ss_pred             eeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc------CCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence            7777653  3    2234556678888999999999999999      9999999994 4444  445668899999999


Q ss_pred             CCCCCCCC
Q 013871          335 VSPDKFGD  342 (434)
Q Consensus       335 ~~~~~~~~  342 (434)
                      +.+-+..+
T Consensus       304 d~~lmAaa  311 (323)
T KOG0322|consen  304 DCELMAAA  311 (323)
T ss_pred             CCchhhhc
Confidence            96555444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=3.6e-09  Score=101.15  Aligned_cols=114  Identities=11%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~-~~~~i~v~~~~   78 (434)
                      |.||.|+.||.+|++++     .|..+.|||....+.++.+..+  |...+-++.|-|  ++++++++ +|..|++||+.
T Consensus        53 VN~LeWn~dG~lL~SGS-----DD~r~ivWd~~~~KllhsI~Tg--HtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   53 VNCLEWNADGELLASGS-----DDTRLIVWDPFEYKLLHSISTG--HTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             ecceeecCCCCEEeecC-----CcceEEeecchhcceeeeeecc--cccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            78999999999999988     8999999999988888887665  447777999988  55677777 56799999997


Q ss_pred             CCCC----------ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           79 DFPK----------GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        79 ~~~~----------~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ....          .....-|...|+.++..|++ +.+ +|.   .+.+|.++-|++..
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-Pht-fws---asEDGtirQyDiRE  179 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHT-FWS---ASEDGTIRQYDIRE  179 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCC-Cce-EEE---ecCCcceeeecccC
Confidence            5211          11123345678888888874 332 222   35667888888854

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.96  E-value=1.9e-06  Score=79.33  Aligned_cols=253  Identities=17%  Similarity=0.250  Sum_probs=147.8

Q ss_pred             CCeEEEEeCCCCCCc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccce
Q 013871           69 TNEIQFFDTTDFPKG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCST  144 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~  144 (434)
                      +..|++|++......   ...-....+.+-++|+|+.....++-.+   +..+.|-.|.+...+. -..+.........-
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~---~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p   91 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEP---GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP   91 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEec---CCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence            468999998742211   1112235577888999984333333322   3356677777764210 11222222333444


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCC----------eEEEEECcCCCEEEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGP----------VHDVQWSYSGSEFAVV  213 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~----------i~~v~wspdg~~~av~  213 (434)
                      +.++.+++|++|++.. -.        .|...++-+..+|.-...+. +.+.++          +|...+.|++++++++
T Consensus        92 ~yvsvd~~g~~vf~An-Y~--------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~  162 (346)
T COG2706          92 CYVSVDEDGRFVFVAN-YH--------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP  162 (346)
T ss_pred             eEEEECCCCCEEEEEE-cc--------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence            8899999999876531 10        12223444433332222211 112233          8999999999999986


Q ss_pred             EccCCCeEEEEecccceeEE-----e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEee---C
Q 013871          214 YGFMPASATIFNKKCRPILE-----L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR---A  279 (434)
Q Consensus       214 ~g~~~~~v~l~d~~~~~~~~-----~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~---~  279 (434)
                      .=..| +|.+|++....+..     +  +.++ .-|.|+|+|++..+..-  ++++|.+|..+..    +.+..+.   .
T Consensus       163 DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~  238 (346)
T COG2706         163 DLGTD-RIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPE  238 (346)
T ss_pred             ecCCc-eEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence            44333 99999986333221     1  2333 56999999998877652  6789999998863    2333221   1


Q ss_pred             ----C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeeeee--cc--cceeeEEEcCCCCCCCC
Q 013871          280 ----E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFKKM--FD--KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       280 ----~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~~~~~~--~~--~~~~~~w~p~~~~~~~~  342 (434)
                          . ....+..+|||+||.++--.     .+.|-+|+++   |++-....  .+  .-..+.+.|.+..|+..
T Consensus       239 dF~g~~~~aaIhis~dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         239 DFTGTNWAAAIHISPDGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             ccCCCCceeEEEECCCCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence                1 34459999999999887643     6788899883   44433321  11  13456667777666655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=4.4e-08  Score=88.84  Aligned_cols=240  Identities=12%  Similarity=0.114  Sum_probs=144.3

Q ss_pred             ceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----CCeEEEE
Q 013871            3 LLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----TNEIQFF   75 (434)
Q Consensus         3 ~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----~~~i~v~   75 (434)
                      ..+.|.-  .+.-+.+++     .|+.|++||+.+......+...++......+++-...++.++++.     +-.|.+|
T Consensus        74 N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lw  148 (376)
T KOG1188|consen   74 NGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLW  148 (376)
T ss_pred             cceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEE
Confidence            3455544  234455555     789999999987766554444433223444666566788888873     2389999


Q ss_pred             eCCCCCC--ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           76 DTTDFPK--GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        76 ~~~~~~~--~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      |+.....  .....-|.+.|+.+.|+|....+++     ++..+|-|.||++........+.+.-.+...+..+.|..++
T Consensus       149 DvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl-----SGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  149 DVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL-----SGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK  223 (376)
T ss_pred             EeccccchhhhhhhhccCcceeEEecCCCCCeEE-----eecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence            9977543  1223456788999999999666665     46778999999997654344444444455667889999888


Q ss_pred             -CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC-----------CCeEEE-EECcCCCEEEEEEccCCCe
Q 013871          154 -TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-----------GPVHDV-QWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       154 -~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-----------~~i~~v-~wspdg~~~av~~g~~~~~  220 (434)
                       +.|.+++..+   +-       .+|.++  .+ .....++..           ..-+-| ..+|.+.-+..+.|..-++
T Consensus       224 ykrI~clTH~E---tf-------~~~ele--~~-~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~  290 (376)
T KOG1188|consen  224 YKRIMCLTHME---TF-------AIYELE--DG-SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNK  290 (376)
T ss_pred             cceEEEEEccC---ce-------eEEEcc--CC-ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCc
Confidence             3466655332   11       123332  22 122222110           000111 1235444454445554556


Q ss_pred             EEEEecc-------cceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          221 ATIFNKK-------CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       221 v~l~d~~-------~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..++-+.       ...+..+   |..-+.++.|.-.+.++.+||   .+|.+.+|-.
T Consensus       291 ~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGG---EDG~l~~Wk~  345 (376)
T KOG1188|consen  291 GTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGG---EDGLLQAWKV  345 (376)
T ss_pred             eeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccC---CCceEEEEec
Confidence            6665332       1122233   344567888998899999999   8899999975

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.94  E-value=7.5e-06  Score=74.02  Aligned_cols=227  Identities=11%  Similarity=0.175  Sum_probs=129.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE--EEEeecCcCCCCCCeeeecCCCcEEEEecC--------CeEE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV--YQLFQKNMTKTTWPSIRFSSDEAVACRMAT--------NEIQ   73 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~--~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--------~~i~   73 (434)
                      .++|..|..=++.+.      |.-.+||+.+--++.  +.+....   ..+..+-|  -.++||..++        |.|.
T Consensus        10 svs~NQD~ScFava~------~~Gfriyn~~P~ke~~~r~~~~~G---~~~veMLf--R~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen   10 SVSFNQDHSCFAVAT------DTGFRIYNCDPFKESASRQFIDGG---FKIVEMLF--RSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             EEEEccCCceEEEEe------cCceEEEecCchhhhhhhccccCc---hhhhhHhh--hhceEEEecCCCCCCCCCceEE
Confidence            466776666555444      556889987643221  1111111   11112222  3456665432        5899


Q ss_pred             EEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           74 FFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      |||-....  ....+. ...|.++.++++   .|++..      +..|.+|..++.  -+.++...        ..-||.
T Consensus        79 IWDD~k~~--~i~el~f~~~I~~V~l~r~---riVvvl------~~~I~VytF~~n--~k~l~~~e--------t~~NPk  137 (346)
T KOG2111|consen   79 IWDDLKER--CIIELSFNSEIKAVKLRRD---RIVVVL------ENKIYVYTFPDN--PKLLHVIE--------TRSNPK  137 (346)
T ss_pred             EEecccCc--EEEEEEeccceeeEEEcCC---eEEEEe------cCeEEEEEcCCC--hhheeeee--------cccCCC
Confidence            99943322  333333 235888888876   243332      357899998842  33333322        122455


Q ss_pred             CCeEEEEEEecccccCcee----ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEecc
Q 013871          153 STGLLAVAQSDVDKTNQSY----YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK  227 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~----~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~  227 (434)
                      |  |+.+... ..+..-.+    .|...|..+.........+--.|+..|.+++.+-+|..+|  +++..| -|+|||..
T Consensus       138 G--lC~~~~~-~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vA--TaStkGTLIRIFdt~  212 (346)
T KOG2111|consen  138 G--LCSLCPT-SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVA--TASTKGTLIRIFDTE  212 (346)
T ss_pred             c--eEeecCC-CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEE--EeccCcEEEEEEEcC
Confidence            5  2222111 11111111    1333333332222111122334688999999999999999  566566 67999985


Q ss_pred             -cceeEEeC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          228 -CRPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       228 -~~~~~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                       +..+.++.    ...+.+|+|||++.+||+++   ..|++.|+.++.
T Consensus       213 ~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS---dKgTlHiF~l~~  257 (346)
T KOG2111|consen  213 DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS---DKGTLHIFSLRD  257 (346)
T ss_pred             CCcEeeeeecCCchheEEEEEeCCCccEEEEEc---CCCeEEEEEeec
Confidence             66777773    45688999999999999998   668999998764

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=1.7e-08  Score=95.34  Aligned_cols=289  Identities=15%  Similarity=0.178  Sum_probs=170.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee---cCCCcEEEEecCCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF---SSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~---S~d~~~la~~~~~~i~v~~~~   78 (434)
                      |..|.|...|..|++.+     .|..|.+||...+..+..|...  |...+-.-.|   +.|...+.++.++++++=.+.
T Consensus       145 VntV~FN~~Gd~l~SgS-----DD~~vv~WdW~~~~~~l~f~SG--H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~  217 (559)
T KOG1334|consen  145 VNTVHFNQRGDVLASGS-----DDLQVVVWDWVSGSPKLSFESG--HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL  217 (559)
T ss_pred             cceeeecccCceeeccC-----ccceEEeehhhccCcccccccc--cccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence            67889999999999988     8999999999999888777654  2233323334   445555555678888887765


Q ss_pred             CCCCce-ee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013871           79 DFPKGI-LY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~-~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~  152 (434)
                      .-.... ..  .-|...|..+++-|+....+.     +.+.++.+.-+++....+......+....   .....+.-+|.
T Consensus       218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~-----S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFL-----SCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             cccceecceecccccCccceeeecCCCCCccc-----ccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            422111 11  122334666666666322221     34666777767765532212122222111   13345556666


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeee--ec--CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL--RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-  227 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l--~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-  227 (434)
                      ..+.+.+  ...|...+.|.+.. +..-...+.-....  .+  +..-.|..++++.++..+.+  .+.|..|+||... 
T Consensus       293 nt~~faV--gG~dqf~RvYD~R~-~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  293 NTNEFAV--GGSDQFARVYDQRR-IDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSM  367 (559)
T ss_pred             Ccccccc--CChhhhhhhhcccc-hhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEecccc
Confidence            5544322  22344444333211 11101111000000  01  11346789999988888885  4456689999532 


Q ss_pred             --c------c----eeEEeCCcCee-----EE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871          228 --C------R----PILELGSGPYN-----TV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       228 --~------~----~~~~~~~~~~~-----~i-~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                        +      .    .+...-++.+|     .+ .|-|...|+++|+   .-|.|.||+.++++.|....+.  -+.+++=
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS---DCGhIFiW~K~t~eii~~MegDr~VVNCLEp  444 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS---DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEP  444 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC---ccceEEEEecchhHHHHHhhcccceEeccCC
Confidence              2      1    11111122222     22 5889999998876   5599999999999888777663  3445888


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +|--..||+++.      |.-||||.-.+
T Consensus       445 HP~~PvLAsSGi------d~DVKIWTP~~  467 (559)
T KOG1334|consen  445 HPHLPVLASSGI------DHDVKIWTPLT  467 (559)
T ss_pred             CCCCchhhccCC------ccceeeecCCc
Confidence            899899999998      99999999744

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.89  E-value=2.3e-07  Score=91.06  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=116.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CC--eEEEEeCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TN--EIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~--~i~v~~~~   78 (434)
                      ..=.|||+|..|+..+-..+. ...+.++|+.+|+.........   ... .++|||||+.|+...  ++  .|.++|+.
T Consensus       196 ~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g---~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         196 LTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG---NNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             eccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC---ccC-CccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            344689999998877633211 1579999999886544333221   222 579999999999874  33  44555544


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....   .++.                                                 -.......-.|+|||++|++
T Consensus       271 ~~~~---~~Lt-------------------------------------------------~~~gi~~~Ps~spdG~~ivf  298 (425)
T COG0823         271 GKNL---PRLT-------------------------------------------------NGFGINTSPSWSPDGSKIVF  298 (425)
T ss_pred             CCcc---eecc-------------------------------------------------cCCccccCccCCCCCCEEEE
Confidence            3210   0000                                                 00011114568999999888


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe--EEEEecccce-eEEeC
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS--ATIFNKKCRP-ILELG  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~--v~l~d~~~~~-~~~~~  235 (434)
                      .    .|..++     ..+|.++..+....+++....+.. ...|||||+++++.. ...+.  +.++|+.... +..+.
T Consensus       299 ~----Sdr~G~-----p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         299 T----SDRGGR-----PQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             E----eCCCCC-----cceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEe-ccCCceeeEEeccCCCCcEEEcc
Confidence            7    333333     368888888876666665533333 789999999999975 33444  6666665443 45553


Q ss_pred             -CcCeeEEEECCCCCeEEEEecC
Q 013871          236 -SGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       236 -~~~~~~i~~SP~g~~l~~~~~~  257 (434)
                       ......-.|.|+|+.+...+..
T Consensus       368 ~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         368 STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ccccCCCCCcCCCCceEEEeccC
Confidence             3334467899999988876543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.87  E-value=1.8e-05  Score=75.04  Aligned_cols=288  Identities=13%  Similarity=0.075  Sum_probs=135.5

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~   84 (434)
                      +|.+||+.|+..+..  ....++.+.|+.+++..+ +.....  .......++++++.++... +.+|.-.|+.+.....
T Consensus        42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~Q-LTdg~g--~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~  116 (386)
T PF14583_consen   42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQ-LTDGPG--DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV  116 (386)
T ss_dssp             -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE----SS---B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred             CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEE-CccCCC--CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence            589999999987742  235789999999997644 433321  2233567889999887764 4589988988865434


Q ss_pred             eeeeecCCeeEEEEeCCCCC-eE-EEEecCCC----------------CCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871           85 LYRLRVPGVAAFEVSKAPGS-HV-AVFVPESK----------------GSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~-~i-a~~~~~~~----------------~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ...+...-+....|+.+.+. .+ .+.+....                ..+..|...++.+   ++. ...---..-...
T Consensus       117 vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t---G~~-~~v~~~~~wlgH  192 (386)
T PF14583_consen  117 VYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT---GER-KVVFEDTDWLGH  192 (386)
T ss_dssp             EEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----E-EEEEEESS-EEE
T ss_pred             EEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC---Cce-eEEEecCccccC
Confidence            44444443444566544333 22 22222111                1122333334433   222 111111122235


Q ss_pred             EEECCCCCeEEEEE-EecccccCceeecceeEEEEeeCCcceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCC---eE
Q 013871          147 LNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPA---SA  221 (434)
Q Consensus       147 ~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~-~i~~v~wspdg~~~av~~g~~~~---~v  221 (434)
                      +.++|....++..+ ....+...      ..||.++.++.....+.-...+ .+..=-|.|||..+.+......+   -|
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd------~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i  266 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVD------QRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWI  266 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-------SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEE
T ss_pred             cccCCCCCCEEEEeccCCcceec------eEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEE
Confidence            66777655544443 33334433      1378888877654443211122 33344699999998875432222   44


Q ss_pred             EEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCC-------------CCCeEEEEEccCCEEEEEeeC--------
Q 013871          222 TIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA--------  279 (434)
Q Consensus       222 ~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~-------------~~g~i~iwd~~~~~~i~~~~~--------  279 (434)
                      .-+|.+......+. .....-+--|+||++++-=|.+.             .+-.|++++++.++......+        
T Consensus       267 ~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~  346 (386)
T PF14583_consen  267 AGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLD  346 (386)
T ss_dssp             EEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BT
T ss_pred             EeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeec
Confidence            55677644333332 22344566789999887544321             012577888887754332222        


Q ss_pred             -C-Cce--EEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          280 -E-CSV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       280 -~-~~~--~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                       + .+.  ...|||||++++..+..     .|...||-
T Consensus       347 ~~~q~~hPhp~FSPDgk~VlF~Sd~-----~G~~~vY~  379 (386)
T PF14583_consen  347 GDRQVTHPHPSFSPDGKWVLFRSDM-----EGPPAVYL  379 (386)
T ss_dssp             TBSSTT----EE-TTSSEEEEEE-T-----TSS-EEEE
T ss_pred             CCCccCCCCCccCCCCCEEEEECCC-----CCCccEEE
Confidence             1 122  38999999999999874     55555543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.87  E-value=7e-07  Score=86.33  Aligned_cols=268  Identities=14%  Similarity=0.141  Sum_probs=147.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      +.|..||||+||+..+.    ....|++||+.+-..  .|.-+- ..+.+...-.|.|=.-++.. .|..|.+.....  
T Consensus        55 t~ik~s~DGqY~lAtG~----YKP~ikvydlanLSL--KFERhl-Dae~V~feiLsDD~SK~v~L~~DR~IefHak~G--  125 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGT----YKPQIKVYDLANLSL--KFERHL-DAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--  125 (703)
T ss_pred             ceeEecCCCcEEEEecc----cCCceEEEEccccee--eeeecc-cccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence            46889999999987663    357899999986643  222211 12444334445565555555 455777655332  


Q ss_pred             CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        ....++++. -.++.++--...   +|..   +....|.-+++..   ++-+.....-......+..|+....|++.+
T Consensus       126 --~hy~~RIP~~GRDm~y~~~scD---ly~~---gsg~evYRlNLEq---GrfL~P~~~~~~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  126 --RHYRTRIPKFGRDMKYHKPSCD---LYLV---GSGSEVYRLNLEQ---GRFLNPFETDSGELNVVSINEEHGLLACGT  194 (703)
T ss_pred             --eeeeeecCcCCccccccCCCcc---EEEe---ecCcceEEEEccc---cccccccccccccceeeeecCccceEEecc
Confidence              223333331 122322211111   1111   1122344444444   333333333334445556666555444332


Q ss_pred             EecccccCceeecce--eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---
Q 013871          161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~---  234 (434)
                         .+.....|....  .+-.++....-....-....-.|.++.|+.+|-.++|  |...|.+.|||++.. ++..-   
T Consensus       195 ---~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl~~kdh~  269 (703)
T KOG2321|consen  195 ---EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPLLVKDHG  269 (703)
T ss_pred             ---cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCceeecccC
Confidence               122222222110  0111111110000000011235899999999988885  888999999999743 33322   


Q ss_pred             CCcCeeEEEECCCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871          235 GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                      ..-++..+.|.+.+.  .|++..    ...++|||..+|+.+..++.. .+..+++-|++-+|++|-.
T Consensus       270 ~e~pi~~l~~~~~~~q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane  333 (703)
T KOG2321|consen  270 YELPIKKLDWQDTDQQNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE  333 (703)
T ss_pred             CccceeeecccccCCCceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence            367899999988743  454442    247999999999988877653 5566899999999999887

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.86  E-value=2.7e-06  Score=91.38  Aligned_cols=271  Identities=14%  Similarity=0.188  Sum_probs=144.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEE----EcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILW----KTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iW----d~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |.++.|=++..-|+...     .+|.|.+.    +..+.  +.+..+.      .++.+++||||+.+|+... +++|.+
T Consensus        78 ivs~~yl~d~~~l~~~~-----~~Gdi~~~~~~~~~~~~~~E~VG~vd------~GI~a~~WSPD~Ella~vT~~~~l~~  146 (928)
T PF04762_consen   78 IVSFQYLADSESLCIAL-----ASGDIILVREDPDPDEDEIEIVGSVD------SGILAASWSPDEELLALVTGEGNLLL  146 (928)
T ss_pred             EEEEEeccCCCcEEEEE-----CCceEEEEEccCCCCCceeEEEEEEc------CcEEEEEECCCcCEEEEEeCCCEEEE
Confidence            44566666666555555     56778777    44433  2333331      5677999999999999885 457776


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEE-E-ecCC-----CCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAV-F-VPES-----KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~-~-~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .. .+++......++.+...       .+..+.+ | ..++     .|..+.-.+-+ |+.. .......+ .....+.+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~-------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~-p~~~-~~d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFG-------ESKHVSVGWGKKETQFHGSAGKAAARQLRD-PTVP-KVDEGKLS-WDDGRVRI  215 (928)
T ss_pred             Ee-ccceEEEEeecCccccC-------CCceeeeccCcccCccCcchhhhhhhhccC-CCCC-ccccCccc-cCCCceEE
Confidence            64 34443222222211100       0112211 1 0010     11110000000 0000 00112233 45567899


Q ss_pred             EECCCCCeEEEEEEeccc---ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEE
Q 013871          148 NWNRGSTGLLAVAQSDVD---KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATI  223 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d---~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l  223 (434)
                      +|-.||.++++..-....   ...+.|.-         .|.-.... -...|--+.++|.|.|+.+|.+....+ ..|.+
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~R---------eG~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvF  285 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSR---------EGELQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVF  285 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECC---------CceEEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEE
Confidence            999999998775432111   12222221         11111000 011344567999999999997543222 26777


Q ss_pred             EecccceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC-CceEEEECCCCC
Q 013871          224 FNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE-CSVTSEWSPDGR  292 (434)
Q Consensus       224 ~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~-~~~~~~wspdg~  292 (434)
                      |.-.+-.-.+|      ....+..+.||+|+..||+.-.+    .|.+|-+.++.    ..-.+... ....+.|+|...
T Consensus       286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p  361 (928)
T PF04762_consen  286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP  361 (928)
T ss_pred             EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence            87655443333      24578999999999999996522    59999999874    22233322 334499999644


Q ss_pred             -EEEEEEcCCceeeCCcEEEEee
Q 013871          293 -YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       293 -~l~tas~~prl~~D~~i~iw~~  314 (434)
                       .|...+.      ++.+.++++
T Consensus       362 ~~L~v~t~------~g~~~~~~~  378 (928)
T PF04762_consen  362 LRLHVLTS------NGQYEIYDF  378 (928)
T ss_pred             CEEEEEec------CCcEEEEEE
Confidence             4566665      566665554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.78  E-value=3.1e-05  Score=83.43  Aligned_cols=289  Identities=17%  Similarity=0.267  Sum_probs=159.6

Q ss_pred             eEEecCCCcEEEEEecCCCC-CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTP-QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTT   78 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~-~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~   78 (434)
                      .|+|=.||.|+|+-+..... .-+.++||+ .+|+. .+....- . ..-.+++|.|.|+++|+...    ..|.+|+-+
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L-~stSE~v-~-gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN  289 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGEL-QSTSEPV-D-GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN  289 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceE-EeccccC-C-CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence            57899999999986642222 247899999 44764 3322221 1 22237899999999998732    489999976


Q ss_pred             CCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC--CCCceeeeeeccc-ceeEEEECC
Q 013871           79 DFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL--QSQPLARRSFFRC-STVQLNWNR  151 (434)
Q Consensus        79 ~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~--~~~~i~~~~~~~~-~~~~~~ws~  151 (434)
                      ....+ ...++    ...|..+.|+++ +..+|++..+      .|++|...++.  .++.+.   +... ....+.|+|
T Consensus       290 GLrhg-eF~l~~~~~~~~v~~l~Wn~d-s~iLAv~~~~------~vqLWt~~NYHWYLKqei~---~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  290 GLRHG-EFTLRFDPEEEKVIELAWNSD-SEILAVWLED------RVQLWTRSNYHWYLKQEIR---FSSSESVNFVKWDP  358 (928)
T ss_pred             CcEee-eEecCCCCCCceeeEEEECCC-CCEEEEEecC------CceEEEeeCCEEEEEEEEE---ccCCCCCCceEECC
Confidence            64332 23333    236899999999 7888887733      29999987731  011111   1111 223488998


Q ss_pred             CCCe-EEEEEEecccccCcee-----ec------ceeEEEEeeCCcceeeee--------------cCCCCCeEEEEECc
Q 013871          152 GSTG-LLAVAQSDVDKTNQSY-----YG------ESKLNYLTTDGTHEGLVP--------------LRKEGPVHDVQWSY  205 (434)
Q Consensus       152 ~G~~-l~~~~~~~~d~~~~~~-----~g------~~~l~~l~~~~~~~~~v~--------------l~~~~~i~~v~wsp  205 (434)
                      .... |.+++.... .....|     .+      ... ...-++|..-...+              +.-..+|.+++|++
T Consensus       359 e~p~~L~v~t~~g~-~~~~~~~~~v~~s~~~~~~D~g-~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~  436 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQ-YEIYDFAWDVSRSPGSSPNDNG-TVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP  436 (928)
T ss_pred             CCCCEEEEEecCCc-EEEEEEEEEEEecCCCCccCce-EEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence            6443 333322110 000000     00      000 01112232211111              12267899999999


Q ss_pred             CCCEEEEEEccCCCeEEEEeccccee-----------E----------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871          206 SGSEFAVVYGFMPASATIFNKKCRPI-----------L----------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~~~~-----------~----------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~  264 (434)
                      ++..+++++.  ++.+.+|.......           .          .........+.|-.+..++++...+.....+.
T Consensus       437 ~~~~~avl~~--d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  514 (928)
T PF04762_consen  437 SNSRFAVLTS--DGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV  514 (928)
T ss_pred             CCCeEEEEEC--CCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence            9988887644  67888886421110           0          01233456788888777777766542346888


Q ss_pred             EEEccCCE---EEEEee-CCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          265 FWDYVDGK---QLGTTR-AECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       265 iwd~~~~~---~i~~~~-~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +++..+.+   .+.... ..... .+...++...++.-+.      ||.+...+..+.
T Consensus       515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~------~G~v~~~~~~~~  566 (928)
T PF04762_consen  515 LVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTN------DGKVFQLSSDGE  566 (928)
T ss_pred             EEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEEC------CCEEEEeecCCC
Confidence            88874332   222222 22222 2455555554455555      666665555444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.78  E-value=9.2e-06  Score=88.93  Aligned_cols=112  Identities=14%  Similarity=0.092  Sum_probs=76.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE--------------EeCC--c--------CeeEEEECCCCCeEE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS--G--------PYNTVRWNPKGKFLC  252 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~--------------~~~~--~--------~~~~i~~SP~g~~l~  252 (434)
                      ..+.++++|+|+.++++ ...+++|++||++.....              .++.  +        .-..++++|+|++++
T Consensus       741 ~P~GIavspdG~~LYVA-Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV  819 (1057)
T PLN02919        741 QPSGISLSPDLKELYIA-DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV  819 (1057)
T ss_pred             CccEEEEeCCCCEEEEE-ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence            34679999999987764 555779999998643221              1110  0        124789999998554


Q ss_pred             EEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          253 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                       +..+  ++.|.+||..++........               ..+..++++++|+.+++-+.      ++.|++|+....
T Consensus       820 -ADs~--N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~  890 (1057)
T PLN02919        820 -ADSY--NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG  890 (1057)
T ss_pred             -EECC--CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence             4433  37999999988765533211               13456899999997776666      899999999664


Q ss_pred             e
Q 013871          318 L  318 (434)
Q Consensus       318 ~  318 (434)
                      .
T Consensus       891 ~  891 (1057)
T PLN02919        891 E  891 (1057)
T ss_pred             c
Confidence            3

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=7.3e-07  Score=91.81  Aligned_cols=232  Identities=13%  Similarity=0.149  Sum_probs=142.5

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEc-CC----CcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKT-ET----GEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~-~~----g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |-..|+|++     .|+.|+||+- .+    -+.+..+..-+.     ...+. .+.|-....+|.+.+ -..|+|||..
T Consensus      1122 D~aLlLtas-----~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1122 DDALLLTAS-----SDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred             chhheeeec-----cCceEEEecccccccCCceeEEeeccccccCccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecc
Confidence            345666777     8999999964 22    244544433211     01232 578887655555554 4799999997


Q ss_pred             CCCCceeeeeecC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc--eeEEEECCCC
Q 013871           79 DFPKGILYRLRVP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGS  153 (434)
Q Consensus        79 ~~~~~~~~~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~--~~~~~ws~~G  153 (434)
                      ....  ...+...   .|++++-+-..+..++.     +-.+|.|++||.....+...+....-|...  ++.+...+.|
T Consensus      1196 ~E~~--~~diP~~s~t~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 KEQV--VADIPYGSSTLVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             ccee--EeecccCCCccceeecccccCCceEEE-----eecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            6332  2223222   34443322222344442     345689999998654334566666666665  7888888877


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCC-cceeeeecCC----CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLRK----EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~~~~v~l~~----~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      -.-++.++++         |+  +++++... ..+..+++..    .+.+.++..++....+|  +|+. ..|.||++.+
T Consensus      1269 ~~elvSgs~~---------G~--I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA--sGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELVSGSQD---------GD--IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA--SGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             CcceeeeccC---------Ce--EEEEecccCcccccceeeeccccCccceeeeeccCCCeee--ecCc-ceEEEEecCh
Confidence            6644444333         32  34444433 2222222222    22488999999988888  5765 7999999988


Q ss_pred             ceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          229 RPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       229 ~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      +.+..+         ..+.+.|++|+|.--++|.|..|   ..|.||...+.
T Consensus      1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D---s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD---STVSIYSCEKP 1383 (1387)
T ss_pred             hhhcccccCcccccCcCCCcceeeecchhHhhhhccCC---ceEEEeecCCc
Confidence            776543         24667899999998888877644   49999976543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.74  E-value=2.8e-06  Score=88.93  Aligned_cols=257  Identities=14%  Similarity=0.203  Sum_probs=141.5

Q ss_pred             EEcCCCcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCc-ee----eeee--cCCeeEEEEeCC
Q 013871           31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKG-IL----YRLR--VPGVAAFEVSKA  101 (434)
Q Consensus        31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~-~~----~~~~--~~~v~~~~~sp~  101 (434)
                      |++ .|..+..+..++   ..+..++-+++ +.+|++++ ||+|++|+....... ..    .+.+  ...+..+..-+.
T Consensus      1034 W~p-~G~lVAhL~Ehs---~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHS---SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN 1109 (1431)
T ss_pred             CCc-cceEeehhhhcc---ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC
Confidence            663 466666665544   33336666665 49999995 579999998653321 11    1111  123455555554


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCCc----eeeeeecc-cceeEEE-EC-CCCCeEEEEEEecccccCceeecc
Q 013871          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQP----LARRSFFR-CSTVQLN-WN-RGSTGLLAVAQSDVDKTNQSYYGE  174 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~----i~~~~~~~-~~~~~~~-ws-~~G~~l~~~~~~~~d~~~~~~~g~  174 (434)
                       +..+|+-     +.+|.|++.++........    .......+ ...+.|. +. ..+..+++. .+.  .      + 
T Consensus      1110 -~~~~Av~-----t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~--~------~- 1173 (1431)
T KOG1240|consen 1110 -GDQFAVS-----TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATD--L------S- 1173 (1431)
T ss_pred             -CCeEEEE-----cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEe--c------c-
Confidence             3445542     5678899988865211111    11111111 1112221 11 122211111 110  0      1 


Q ss_pred             eeEEEEeeCCccee-eeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe---CCcCeeEEEECC--
Q 013871          175 SKLNYLTTDGTHEG-LVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNP--  246 (434)
Q Consensus       175 ~~l~~l~~~~~~~~-~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~---~~~~~~~i~~SP--  246 (434)
                       .+..+++...+.. +... ...|.|.+++.+|-+.+++  .|...|.+.+||++.+ ++.+.   +..+++.+...|  
T Consensus      1174 -~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlv--iGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~ 1250 (1431)
T KOG1240|consen 1174 -RIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLV--IGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY 1250 (1431)
T ss_pred             -ceEEecchhhhhHHhhhcCccccceeEEEecCCceEEE--EecCCceEEEEEeecCceeecccCcccCCcceEEeeccC
Confidence             1233333222110 0111 1268999999999999888  4888899999999854 44444   245556555444  


Q ss_pred             -CCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeCC-C--------------------ceEEEECCCCCEEEEEEcCCce
Q 013871          247 -KGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRAE-C--------------------SVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       247 -~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~~-~--------------------~~~~~wspdg~~l~tas~~prl  303 (434)
                       ....+++++. ++  +.|.+|++.++-+-..+-.. .                    ...+.+.--+.+++++++    
T Consensus      1251 ~~~S~~vs~~~~~~--nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggs---- 1324 (1431)
T KOG1240|consen 1251 PQESVSVSAGSSSN--NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGS---- 1324 (1431)
T ss_pred             CCCceEEEecccCC--CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCC----
Confidence             4457777776 44  79999999988443333221 1                    112444445668888888    


Q ss_pred             eeCCcEEEEeecCce
Q 013871          304 QIDNGIKIFHHNGSL  318 (434)
Q Consensus       304 ~~D~~i~iw~~~g~~  318 (434)
                        |.+|+.||...-.
T Consensus      1325 --d~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1325 --DMKIRKWDPTRPE 1337 (1431)
T ss_pred             --ccceeeccCCCcc
Confidence              9999999986543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.71  E-value=1.4e-05  Score=77.36  Aligned_cols=234  Identities=10%  Similarity=0.046  Sum_probs=124.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC-cC--------------CCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN-MT--------------KTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~-~~--------------~~~~~~~~~S~d~~~la~   66 (434)
                      +....|||+|++|+...      +++|.++++.+++..+ +.... ..              -..-..+-|||||++||+
T Consensus        45 ~~~~~~sP~g~~~~~v~------~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~  117 (353)
T PF00930_consen   45 LQDAKWSPDGKYIAFVR------DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAF  117 (353)
T ss_dssp             BSEEEE-SSSTEEEEEE------TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEE
T ss_pred             cccceeecCCCeeEEEe------cCceEEEECCCCCeEE-eccccceeEEcCccceeccccccccccceEECCCCCEEEE
Confidence            45688999999999887      6899999988885443 22211 00              012246789999999998


Q ss_pred             e-c-CCeEEEEeCC---CCCC--ceeeee---------------------------ec--------CCeeEEEEeCCCCC
Q 013871           67 M-A-TNEIQFFDTT---DFPK--GILYRL---------------------------RV--------PGVAAFEVSKAPGS  104 (434)
Q Consensus        67 ~-~-~~~i~v~~~~---~~~~--~~~~~~---------------------------~~--------~~v~~~~~sp~~~~  104 (434)
                      . . +..|..+.+.   ....  .....+                           ..        .-+..+.|++++..
T Consensus       118 ~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  118 LRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             EEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             EEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE
Confidence            6 2 2233333221   1100  001011                           00        02556677776332


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEE-CCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          105 HVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      .+..+. ........+.+++..+.. .+.+. .....   .....+.| .++|..++.+..    +.     |-..||.+
T Consensus       198 l~~~~~-nR~q~~~~l~~~d~~tg~-~~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~----~~-----G~~hly~~  265 (353)
T PF00930_consen  198 LWVQWL-NRDQNRLDLVLCDASTGE-TRVVL-EETSDGWVDVYDPPHFLGPDGNEFLWISE----RD-----GYRHLYLY  265 (353)
T ss_dssp             EEEEEE-ETTSTEEEEEEEEECTTT-CEEEE-EEESSSSSSSSSEEEE-TTTSSEEEEEEE----TT-----SSEEEEEE
T ss_pred             EEEEEc-ccCCCEEEEEEEECCCCc-eeEEE-EecCCcceeeecccccccCCCCEEEEEEE----cC-----CCcEEEEE
Confidence            333332 233344455666665421 11111 11111   11123444 488888776643    22     33468999


Q ss_pred             eeCCcceeeeecCCCCCeE-EEEECcCCCEEEEEEcc-CCC--eEEEEecc-cceeEEeC-CcCe-eEEEECCCCCeEEE
Q 013871          181 TTDGTHEGLVPLRKEGPVH-DVQWSYSGSEFAVVYGF-MPA--SATIFNKK-CRPILELG-SGPY-NTVRWNPKGKFLCL  253 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~-~v~wspdg~~~av~~g~-~~~--~v~l~d~~-~~~~~~~~-~~~~-~~i~~SP~g~~l~~  253 (434)
                      +..+.....++.. ...|. -+.|+++++.+.+.+.. .+.  .+...+++ +..+..+. .... ..+.|||+|++++.
T Consensus       266 ~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  266 DLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             ETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             cccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            8888753333322 45664 47899998888775443 234  45555667 66676663 2333 48999999998887


Q ss_pred             Ee
Q 013871          254 AG  255 (434)
Q Consensus       254 ~~  255 (434)
                      .-
T Consensus       345 ~~  346 (353)
T PF00930_consen  345 TY  346 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.68  E-value=5.3e-07  Score=81.02  Aligned_cols=273  Identities=11%  Similarity=0.159  Sum_probs=152.8

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-E----EEEEeecCcC---------CCCCCeeeecCCC---cE
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-A----VYQLFQKNMT---------KTTWPSIRFSSDE---AV   63 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-~----~~~~~~~~~~---------~~~~~~~~~S~d~---~~   63 (434)
                      +|+++.|--.|.||+|+.     ..+.|.++.-+... |    ...|+.+...         .+.+..+.|-.++   .+
T Consensus        28 ~ItaVefd~tg~YlatGD-----kgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          28 KITAVEFDETGLYLATGD-----KGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             eeeEEEeccccceEeecC-----CCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            478999999999999966     56888888643221 1    1123322110         1345577887765   36


Q ss_pred             EEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----ee-
Q 013871           64 ACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RR-  137 (434)
Q Consensus        64 la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~-  137 (434)
                      |++..+.+|++|.+-......+..-   +...---+|-+++...         +..+++=++...  ...++     .. 
T Consensus       103 LlstNdktiKlWKiyeknlk~va~n---nls~~~~~~~~g~~~s---------~~~l~lprls~h--d~iiaa~p~rvya  168 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVAEN---NLSDSFHSPMGGPLTS---------TKELLLPRLSEH--DEIIAAKPCRVYA  168 (460)
T ss_pred             EEecCCceeeeeeeecccchhhhcc---ccccccccccCCCcCC---------HHHhhccccccc--ceEEEeccceecc
Confidence            6767778999999865332111111   1111111222111110         011111111110  00011     01 


Q ss_pred             eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC------CCCeEEEEECcCCCEEE
Q 013871          138 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       138 ~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~------~~~i~~v~wspdg~~~a  211 (434)
                      ..|...+.++.++.|...++..    .|..       .+||.+++..+.-.+|.+..      ..-|.+..|+|....+.
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa----DdLr-------INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~f  237 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA----DDLR-------INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVF  237 (460)
T ss_pred             ccceeEeeeeeecCchheeeec----ccee-------eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceE
Confidence            2233445577788777665432    1111       23555544333233333321      24678899999654443


Q ss_pred             EEEccCCCeEEEEeccccee-------EEe------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013871          212 VVYGFMPASATIFNKKCRPI-------LEL------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  271 (434)
Q Consensus       212 v~~g~~~~~v~l~d~~~~~~-------~~~------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-  271 (434)
                      . |....|.|.+-|++...+       +..            -...+..+.|||+|++|++-.+-    ++.|||++.. 
T Consensus       238 m-YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~k  312 (460)
T COG5170         238 M-YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMAK  312 (460)
T ss_pred             E-EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEeccccc
Confidence            3 566678999999873322       111            12456779999999999876543    7999998744 


Q ss_pred             EEEEEeeCC--------------Cce---EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          272 KQLGTTRAE--------------CSV---TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       272 ~~i~~~~~~--------------~~~---~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .++.++.-|              .+.   .+.||.|..++++|+.      .|.+-|+-.
T Consensus       313 ~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy------~NNfgiyp~  366 (460)
T COG5170         313 NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY------SNNFGIYPT  366 (460)
T ss_pred             CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc------ccceeeecc
Confidence            455555322              222   3899999999999999      888888764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.67  E-value=2.3e-06  Score=83.21  Aligned_cols=111  Identities=15%  Similarity=0.137  Sum_probs=89.4

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +.++|..+.|+.+-..|.  ++..+.++-.|+.+...+. .+  ....+.+++++|||..+++|+     +.|.+||+++
T Consensus       101 h~~~v~~~~~~~~~~ciy--S~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~  173 (541)
T KOG4547|consen  101 HYGNVNEILDAQRLGCIY--SVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET  173 (541)
T ss_pred             CCCcceeeecccccCceE--ecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC
Confidence            478999999998877777  5666889999998754443 33  566778999999999999987     5899999999


Q ss_pred             CEEEEEeeCC--CceEEEECCC-----CCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          271 GKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspd-----g~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ++.+.+|.+|  .+.+++|--+     |.||++....     +..+-+|-..+
T Consensus       174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~-----~r~i~~w~v~~  221 (541)
T KOG4547|consen  174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA-----ERGITVWVVEK  221 (541)
T ss_pred             ceEEEEecCCCcceEEEEEEEeccccccceeeecccc-----ccceeEEEEEc
Confidence            9999999998  3344777766     8888887664     78888898765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.66  E-value=3.3e-05  Score=71.18  Aligned_cols=240  Identities=11%  Similarity=0.177  Sum_probs=129.2

Q ss_pred             eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecC------CeEEEE
Q 013871            4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMAT------NEIQFF   75 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~------~~i~v~   75 (434)
                      .++.+| ++..++...+|    ..-+.+||..+|+.+..+..... |-..  .-.||+||++|.+..+      +.|-||
T Consensus         9 ~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyG--Hg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYG--HGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEec--CEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            578899 45555555555    24588999999998776654321 0011  3479999999998732      589999


Q ss_pred             eCC-CCCCceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCC--ceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           76 DTT-DFPKGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSP--ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        76 ~~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~--~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      |.. .+..  .-.....  +--.+.+.|++ ..+++-.-+-...|  ++.++ ++++   .                   
T Consensus        83 d~~~~~~r--i~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~t---M-------------------  136 (305)
T PF07433_consen   83 DAARGYRR--IGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDT---M-------------------  136 (305)
T ss_pred             ECcCCcEE--EeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-Chhh---c-------------------
Confidence            998 3222  2223333  34567888984 44444321111111  01110 1111   0                   


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC------CCeEEEE
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM------PASATIF  224 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~------~~~v~l~  224 (434)
                        ...|.++    ...++..      |-...+...       .+.-.|..+++.++|.-++-. -++      +.-+-++
T Consensus       137 --~psL~~l----d~~sG~l------l~q~~Lp~~-------~~~lSiRHLa~~~~G~V~~a~-Q~qg~~~~~~PLva~~  196 (305)
T PF07433_consen  137 --QPSLVYL----DARSGAL------LEQVELPPD-------LHQLSIRHLAVDGDGTVAFAM-QYQGDPGDAPPLVALH  196 (305)
T ss_pred             --CCceEEE----ecCCCce------eeeeecCcc-------ccccceeeEEecCCCcEEEEE-ecCCCCCccCCeEEEE
Confidence              0112222    0011110      000000000       013356666776666443321 110      1123333


Q ss_pred             ecccceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEE
Q 013871          225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM  295 (434)
Q Consensus       225 d~~~~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~  295 (434)
                      +.... +..+         -.+.+-+|+++++|.++++.+...  |.+.+||..+++.+....-.++.-++-.+++ +++
T Consensus       197 ~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~  272 (305)
T PF07433_consen  197 RRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG--GRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLV  272 (305)
T ss_pred             cCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC--CEEEEEECCCCCEeeccccCceeeeeecCCc-eEE
Confidence            32211 1111         246778999999999887776533  6899999999999998887777778888887 555


Q ss_pred             EEEc
Q 013871          296 TATT  299 (434)
Q Consensus       296 tas~  299 (434)
                      +.+.
T Consensus       273 ssG~  276 (305)
T PF07433_consen  273 SSGQ  276 (305)
T ss_pred             eCCC
Confidence            5443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=98.63  E-value=6.1e-07  Score=86.55  Aligned_cols=241  Identities=15%  Similarity=0.157  Sum_probs=140.7

Q ss_pred             CCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC---CCC-----ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCce
Q 013871           49 KTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD---FPK-----GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPAS  119 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~---~~~-----~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~  119 (434)
                      ...++.++|-+-+-.|+++ .++.|.+|++..   -..     ....+.|...|-++.+++++...+      ++|.++.
T Consensus       294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y------sgg~Dg~  367 (577)
T KOG0642|consen  294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY------SGGIDGT  367 (577)
T ss_pred             hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE------eeccCce
Confidence            3566678888888888887 578999999932   110     111222333455555555422111      3688999


Q ss_pred             EEEEEcCCCC-------CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871          120 VQIYACGKDL-------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       120 v~i~~~~~~~-------~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      |+.|++|...       +......+.+|...+..+.++..-..|+.+   +.|.+.+.|         ...+...+.+..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w---------~~~~~~~~~f~~  435 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLW---------EPTEESPCTFGE  435 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEee---------ccCCcCccccCC
Confidence            9999987310       011112344555555577777776665432   244444333         222221122222


Q ss_pred             CC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe---------CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871          193 RK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       193 ~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      .+ .+.-.++.+-...-...+ +.+.-+...+++.+... +..+         ....+|.+.+.|.+.+.+.+.   .++
T Consensus       436 ~~e~g~Plsvd~~ss~~a~~~-~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~  511 (577)
T KOG0642|consen  436 PKEHGYPLSVDRTSSRPAHSL-ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDR  511 (577)
T ss_pred             ccccCCcceEeeccchhHhhh-hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCC
Confidence            22 222234444322111221 11212222333333221 1111         124578899999998888776   668


Q ss_pred             eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      .|+++|..+++.+....+|  .++.+++.|.|-+|++++.      |+.+++|...-+
T Consensus       512 ~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~------d~sv~l~kld~k  563 (577)
T KOG0642|consen  512 SIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH------DGSVRLWKLDVK  563 (577)
T ss_pred             ceecccccccccchheeeccceecceeecCCCceEEeecC------Cceeehhhccch
Confidence            9999999999999888777  5566999999999999999      999999998554

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.62  E-value=3.4e-05  Score=81.13  Aligned_cols=261  Identities=14%  Similarity=0.161  Sum_probs=139.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.++.|--+++-|+...     .++.|.+-|.++...  .+.+.  -..++-+.+||||++.|+...+....++...++.
T Consensus        71 i~s~~fl~d~~~i~v~~-----~~G~iilvd~et~~~--eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   71 IVSVQFLADTNSICVIT-----ALGDIILVDPETLEL--EIVGN--VDNGISAASWSPDEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             eEEEEEecccceEEEEe-----cCCcEEEEcccccce--eeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEecccc
Confidence            45667777777666666     678888878777643  22221  1155668999999999999887666666666555


Q ss_pred             CceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           82 KGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        82 ~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ......++.+     ....+-|--.. ..+    .   |..++....+....  .+.+.+. -.....+++.|--||++.
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrke-Tqf----r---gs~gr~~~~~~~~~--ek~~~~~-~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKE-TQF----R---GSEGRQAARQKIEK--EKALEQI-EQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             chhccccccccccccccceecccccc-eee----e---cchhhhcccccccc--cccccch-hhccCCceEEEccCCcEE
Confidence            4333333211     11112221100 000    0   00011000000000  0000001 012345689999999998


Q ss_pred             EEEEEec-cc-ccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEE
Q 013871          157 LAVAQSD-VD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILE  233 (434)
Q Consensus       157 ~~~~~~~-~d-~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~  233 (434)
                      ++..-.. .+ +..+.|         +..|.- ..+.-...+.=++++|-|.|..++.+.... +.+|.+|.-.+-.-.+
T Consensus       211 AVs~~~~~~~~RkirV~---------drEg~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~  280 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVY---------DREGAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE  280 (1265)
T ss_pred             EEEEEeccCCceeEEEe---------cccchh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc
Confidence            7743221 11 222222         222211 111111245557899999999999875443 3368888765433222


Q ss_pred             e------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE--EEeeCCCceEEEECCCCC
Q 013871          234 L------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL--GTTRAECSVTSEWSPDGR  292 (434)
Q Consensus       234 ~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i--~~~~~~~~~~~~wspdg~  292 (434)
                      |      ....++.++|+-++..|++-........|++|-+.+..-.  ..+.-+....+.|+|.-.
T Consensus       281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~  347 (1265)
T KOG1920|consen  281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTE  347 (1265)
T ss_pred             cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCCc
Confidence            2      2445899999999999998432223346999999887322  222223333378888543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=1e-06  Score=81.40  Aligned_cols=138  Identities=14%  Similarity=0.197  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc------c-ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871          193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       193 ~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~------~-~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~  262 (434)
                      .+.|.|++++||.++++|+  +|..|..+.+|++.      . +++...   |...|-|++|.-..++|.+|+   ..|+
T Consensus        54 ~H~GCiNAlqFS~N~~~L~--SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~~  128 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLA--SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWGT  128 (609)
T ss_pred             hhccccceeeeccCCeEEe--ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccce
Confidence            3479999999999988888  78889999999874      2 344333   457788999999889999888   5679


Q ss_pred             EEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-----eeeee-ecccceeeEE
Q 013871          263 MAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKK-MFDKLFQAEW  332 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-----~~~~~-~~~~~~~~~w  332 (434)
                      |...|+++.+.+..+.+.    .+..+.-+|....|++.+.      ++-|.|||....     ++.-. ....++.+.|
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~------~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F  202 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR------AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF  202 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCCceEEEEec------CceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence            999999999998888764    4566999999999999998      999999998443     32222 3347899999


Q ss_pred             EcCCCCCCC
Q 013871          333 KPVSPDKFG  341 (434)
Q Consensus       333 ~p~~~~~~~  341 (434)
                      +|..|.|+.
T Consensus       203 ~P~~P~Li~  211 (609)
T KOG4227|consen  203 HPETPALIL  211 (609)
T ss_pred             cCCCceeEE
Confidence            998887664

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=5.4e-06  Score=82.24  Aligned_cols=191  Identities=18%  Similarity=0.292  Sum_probs=111.6

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCC
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~   79 (434)
                      .|.+|+|.-||+.++..-     +|+.|.|=.+. |..+..-..+.   .....+.||+|.+.+.+. .++++++||...
T Consensus       117 vV~SmsWn~dG~kIcIvY-----eDGavIVGsvd-GNRIwgKeLkg---~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  117 VVVSMSWNLDGTKICIVY-----EDGAVIVGSVD-GNRIWGKELKG---QLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             EEEEEEEcCCCcEEEEEE-----ccCCEEEEeec-cceecchhcch---heccceeecccHHHHHhhhcCCcEEEecccc
Confidence            377899999999998776     78988887654 43333211121   122257999999887776 568999999754


Q ss_pred             -CCCceee--eee--------cCCeeEEEEeCCC-------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871           80 -FPKGILY--RLR--------VPGVAAFEVSKAP-------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        80 -~~~~~~~--~~~--------~~~v~~~~~sp~~-------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                       |......  .+.        ...+.++.|..+.       .+.+++..     ..|+++|+.-.+.  ..++..-+.  
T Consensus       188 nF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy-----~nGr~QiMR~eND--~~Pvv~dtg--  258 (1189)
T KOG2041|consen  188 NFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY-----ANGRMQIMRSEND--PEPVVVDTG--  258 (1189)
T ss_pred             cHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE-----cCceehhhhhcCC--CCCeEEecc--
Confidence             2110000  000        1124445553321       34444332     2256777776654  344443333  


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~  213 (434)
                      ..++...||++|..|+++.. +.|.....  ..+.++++...|..-..+.+. ...|..++|...|-++|+.
T Consensus       259 m~~vgakWnh~G~vLAvcG~-~~da~~~~--d~n~v~Fysp~G~i~gtlkvp-g~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  259 MKIVGAKWNHNGAVLAVCGN-DSDADEPT--DSNKVHFYSPYGHIVGTLKVP-GSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             cEeecceecCCCcEEEEccC-cccccCcc--ccceEEEeccchhheEEEecC-CceeeeeEEcCCceEEEEE
Confidence            45678899999998877532 22222211  223466666666554444443 4578889998877776653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=98.51  E-value=2.4e-07  Score=92.96  Aligned_cols=257  Identities=11%  Similarity=0.077  Sum_probs=164.9

Q ss_pred             CCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           49 KTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      ...|-|..|...|.++.+++|+ -++||.+.+..+....+.|...|++++.+-. +.++|     ....+-.|++|.++.
T Consensus       190 ~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~ia-----aaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  190 RNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIA-----AASNDKVIRVWRLPD  263 (1113)
T ss_pred             hhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhh-----hcccCceEEEEecCC
Confidence            3455588999999999999876 8999998887666667778788888888765 34444     234556899999999


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                         +.++..+..|...++.+.|+|--       ++..|.+-..|.-.     ++..---..........-+-++.|..++
T Consensus       264 ---~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r-----~~~~~y~prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  264 ---GAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDAR-----LEPRIYVPRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             ---CchHHHHhccccceeeeccCccc-------cCCCCCceEecccc-----ccccccCCCCCCcccccceeeeeccccc
Confidence               89999999999999999999853       22233333322211     0000000000011123456677787788


Q ss_pred             CEEEEEEccCCCeEEEEecccceeEEeCCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013871          208 SEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT  284 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~  284 (434)
                      ..|+  +|..++....|......-.+.   ..+-+.++.+- .+.+++-++   -.+.+|++.++.+.+...+|  .+..
T Consensus       329 ~~f~--Tgs~d~ea~n~e~~~l~~~~~---~lif~t~ssd~~~~~~~ar~~---~~~~vwnl~~g~l~H~l~ghsd~~yv  400 (1113)
T KOG0644|consen  329 DRFL--TGSRDGEARNHEFEQLAWRSN---LLIFVTRSSDLSSIVVTARND---HRLCVWNLYTGQLLHNLMGHSDEVYV  400 (1113)
T ss_pred             cccc--cccCCcccccchhhHhhhhcc---ceEEEeccccccccceeeeee---eEeeeeecccchhhhhhcccccceee
Confidence            7888  688777777776542221111   11111222222 344445433   48899999999877776665  5556


Q ss_pred             EEECCCCCEE-EEEEcCCceeeCCcEEEEee-cCceeee--eecccceeeEEEcCCCCCC
Q 013871          285 SEWSPDGRYF-MTATTAPRLQIDNGIKIFHH-NGSLFFK--KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       285 ~~wspdg~~l-~tas~~prl~~D~~i~iw~~-~g~~~~~--~~~~~~~~~~w~p~~~~~~  340 (434)
                      +.++|-...+ ++++.      |+..-|||+ .|..+..  ....++.+-.|++++..+.
T Consensus       401 Ld~Hpfn~ri~msag~------dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  401 LDVHPFNPRIAMSAGY------DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIA  454 (1113)
T ss_pred             eeecCCCcHhhhhccC------CCceEeeecccCCcceeeecccceeeccccCCCCceEe
Confidence            9999865554 56666      999999998 4444333  3345688888988876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.49  E-value=0.00055  Score=62.69  Aligned_cols=223  Identities=14%  Similarity=0.133  Sum_probs=126.6

Q ss_pred             eeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           54 SIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|.+ ++.++.+- ..++|+.|+....   ............+.+. ++ +..+.+-       ...+.+++..+.. 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~~~~G~~~~~~~-g~l~v~~-------~~~~~~~d~~~g~-   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLPGPNGMAFDRPD-GRLYVAD-------SGGIAVVDPDTGK-   71 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESSSEEEEEEECTT-SEEEEEE-------TTCEEEEETTTTE-
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecCCCceEEEEccC-CEEEEEE-------cCceEEEecCCCc-
Confidence            578988 66665555 4579999998763   2333455557778888 55 3333221       1233555655411 


Q ss_pred             CCceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          131 SQPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       131 ~~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                      -+.+.....   .......+...++|+ |. +++........  .....+|.++..+.  .......-...+.++|+||+
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly-~t~~~~~~~~~--~~~g~v~~~~~~~~--~~~~~~~~~~pNGi~~s~dg  145 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGN-LY-VTDSGGGGASG--IDPGSVYRIDPDGK--VTVVADGLGFPNGIAFSPDG  145 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS--EE-EEEECCBCTTC--GGSEEEEEEETTSE--EEEEEEEESSEEEEEEETTS
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCC-EE-EEecCCCcccc--ccccceEEECCCCe--EEEEecCcccccceEECCcc
Confidence            122222210   122345678899998 33 33322211111  00035777776632  22222223456899999999


Q ss_pred             CEEEEEEccCCCeEEEEecc--cc------eeEEeCCc--CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          208 SEFAVVYGFMPASATIFNKK--CR------PILELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~--~~------~~~~~~~~--~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +.|.++ ....+.|..|++.  ..      .+..+...  ....+++..+|++.++.- +  .+.|.++|.+ ++.+..+
T Consensus       146 ~~lyv~-ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~--~~~I~~~~p~-G~~~~~i  220 (246)
T PF08450_consen  146 KTLYVA-DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G--GGRIVVFDPD-GKLLREI  220 (246)
T ss_dssp             SEEEEE-ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T--TTEEEEEETT-SCEEEEE
T ss_pred             hheeec-ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C--CCEEEEECCC-ccEEEEE
Confidence            988874 5556789999874  22      12233333  356799999998666443 3  3799999988 7766655


Q ss_pred             eC--CCceEEEE-CCCCCEEEEEEc
Q 013871          278 RA--ECSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       278 ~~--~~~~~~~w-spdg~~l~tas~  299 (434)
                      .-  ..++.|+| -||...|...+.
T Consensus       221 ~~p~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  221 ELPVPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             E-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred             cCCCCCEEEEEEECCCCCEEEEEeC
Confidence            44  47778999 578777666553

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.49  E-value=0.00036  Score=68.72  Aligned_cols=184  Identities=18%  Similarity=0.258  Sum_probs=110.9

Q ss_pred             EEEECCCCCeEEEEEEecccccCcee------ecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc-CCCEEEEEEcc-
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSY------YGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGF-  216 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~------~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~-  216 (434)
                      .+.+|+..+.+++-+....+. ...|      ....+|+++...+.. +....+..++...++.||- +..++..+.-. 
T Consensus       150 ~l~~N~~qDl~ivWW~~~~~e-~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~  228 (545)
T PF11768_consen  150 HLSVNSSQDLVIVWWPSAQDE-VWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSI  228 (545)
T ss_pred             eEeeccCCCEEEEEecCCCCC-cCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEec
Confidence            556666666555444332211 1111      112356666665542 2222233355557788886 34444433211 


Q ss_pred             -CCC----eEEEEecccce-----eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEE
Q 013871          217 -MPA----SATIFNKKCRP-----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS  285 (434)
Q Consensus       217 -~~~----~v~l~d~~~~~-----~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~  285 (434)
                       .++    ...+|+...+.     +..+ ....+.++++||+...+++|-   .||.|.+||...+.....-..--++.+
T Consensus       229 s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~i  305 (545)
T PF11768_consen  229 SVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTLI  305 (545)
T ss_pred             CCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceEE
Confidence             122    45667664332     3333 467889999999999999998   778999999887643333222356679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecCce-----eee-----------e---ecccceeeEEEcCCCCC
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-----FFK-----------K---MFDKLFQAEWKPVSPDK  339 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-----~~~-----------~---~~~~~~~~~w~p~~~~~  339 (434)
                      +|+|+|..|++|+.      .|.+.+||+.=..     +.+           .   ....+..+.|.+.+...
T Consensus       306 aWHp~gai~~V~s~------qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~  372 (545)
T PF11768_consen  306 AWHPDGAIFVVGSE------QGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLS  372 (545)
T ss_pred             EEcCCCcEEEEEcC------CceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCcc
Confidence            99999999999998      8999999983221     111           1   12357888999776543

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.48  E-value=0.0003  Score=69.81  Aligned_cols=254  Identities=11%  Similarity=0.042  Sum_probs=134.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec------------CC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA------------TN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~------------~~   70 (434)
                      ..+.+||||++|+..-...|.+...|+|.|+.+|+.+.......   ... .+.|++|++.|....            ..
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~---~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP---KFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE---ESE-EEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc---ccc-eEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            36789999999997665555556789999999998766432221   111 389999988776652            22


Q ss_pred             eEEEEeCCCCCCc--eeeeeecC-C-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeee-cccce
Q 013871           71 EIQFFDTTDFPKG--ILYRLRVP-G-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSF-FRCST  144 (434)
Q Consensus        71 ~i~v~~~~~~~~~--~~~~~~~~-~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~-~~~~~  144 (434)
                      .|..|++.+....  .+...... . ...+..|++ +..+.+....... ...+.+.++.... .......... .....
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d-~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~  280 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKD-GRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVE  280 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TT-SSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCc-ccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence            4788888764322  11222222 2 457788888 4555554443322 3667777776520 0112222221 12222


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--  219 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--  219 (434)
                      ..+...  |..+.+.+..+  ..      ...|..+++.....   ..+-+.....+.--.+...+.+|++.+ ..++  
T Consensus       281 ~~v~~~--~~~~yi~Tn~~--a~------~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~-~~~~~~  349 (414)
T PF02897_consen  281 YYVDHH--GDRLYILTNDD--AP------NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY-RENGSS  349 (414)
T ss_dssp             EEEEEE--TTEEEEEE-TT---T------T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE-EETTEE
T ss_pred             EEEEcc--CCEEEEeeCCC--CC------CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE-EECCcc
Confidence            222222  55565554311  11      11355555443321   112233233223333344567777643 3344  


Q ss_pred             eEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCEEE
Q 013871          220 SATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       220 ~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~--~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      .|.++|+. +.....+   ..+.+..+...+++..+.+  .++- ..++++-||+.+++..
T Consensus       350 ~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~-~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  350 RLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFT-TPPTVYRYDLATGELT  409 (414)
T ss_dssp             EEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETT-EEEEEEEEETTTTCEE
T ss_pred             EEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCC-CCCEEEEEECCCCCEE
Confidence            78899998 7666655   3444566666677764433  3332 4689999999988543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.45  E-value=8.6e-06  Score=71.01  Aligned_cols=121  Identities=15%  Similarity=0.187  Sum_probs=82.7

Q ss_pred             eeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-------cceeEE---------eCCcCeeEEEECCCCC
Q 013871          187 EGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------CRPILE---------LGSGPYNTVRWNPKGK  249 (434)
Q Consensus       187 ~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-------~~~~~~---------~~~~~~~~i~~SP~g~  249 (434)
                      ...++ -.+++||++++|..  . |.+ ++. |+.|+=|..+       ++.+.+         .+--.||++...|...
T Consensus        53 ~~iv~eqahdgpiy~~~f~d--~-~Ll-s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD--D-FLL-SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN  127 (325)
T ss_pred             cceeeccccCCCeeeeeeeh--h-hee-ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC
Confidence            34444 23689999999983  2 333 233 4777766432       121111         1234689999999998


Q ss_pred             eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeee
Q 013871          250 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK  321 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~  321 (434)
                      -|+++|   -|+.++-||+++|+....+.+| +-++ +.--.....+++++.      |+++||||. +++.+..
T Consensus       128 Si~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~E------DGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  128 SILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAE------DGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             cEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCC------CccEEEEeccccceeEE
Confidence            888888   4479999999999999999998 3333 444234456889999      999999999 4554433

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.44  E-value=5.3e-07  Score=85.07  Aligned_cols=173  Identities=14%  Similarity=0.198  Sum_probs=116.5

Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC
Q 013871          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                      +|..|.+-.+|..+   ....+.+.. ...+..+.|-...+++++. +       +.|     +|.++-.|.  ..--+.
T Consensus       147 gGrKGHlAa~Dw~t---~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-Q-------K~y-----~yvYD~~Gt--ElHClk  207 (545)
T KOG1272|consen  147 GGRKGHLAAFDWVT---KKLHFEINV-METVRDVTFLHNEQFFAVA-Q-------KKY-----VYVYDNNGT--ELHCLK  207 (545)
T ss_pred             cCCccceeeeeccc---ceeeeeeeh-hhhhhhhhhhcchHHHHhh-h-------hce-----EEEecCCCc--EEeehh
Confidence            45667777777655   333333322 2233455666655655442 0       111     344443332  122233


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ...+|..+.|-|--  |.++++++.+-+..-|+.. +.+.++  ..+.+..+.-+|..-.+.+|.   .+|+|.+|....
T Consensus       208 ~~~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s  282 (545)
T KOG1272|consen  208 RHIRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS  282 (545)
T ss_pred             hcCchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCC
Confidence            35688889999854  5555788888999999974 444444  567777888899888888776   668999999998


Q ss_pred             CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          271 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       271 ~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .+.+..+..|  .+..+++.++|+|++|++.      |+.++|||+..
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~------Dr~~kIWDlR~  324 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGL------DRKVKIWDLRN  324 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeeccc------ccceeEeeecc
Confidence            8776666555  5666999999999999999      99999999855

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.41  E-value=3e-05  Score=77.12  Aligned_cols=261  Identities=14%  Similarity=0.155  Sum_probs=152.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE------E---------EEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA------V---------YQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~------~---------~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      ..|++|.....|++.++     .|+-++|-.+.+...      +         +++.+   |...+..+.|..+.+.|.+
T Consensus        17 L~c~~WNke~gyIAcgG-----~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt   88 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGG-----ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT   88 (1189)
T ss_pred             EEEEEEcccCCeEEecc-----ccceeEEEEccccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence            35888999999999988     899999988754321      0         12222   4477878999999988888


Q ss_pred             e-cCCeEEEEeCCCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCc---eEEEEEcCCCCCCCceeeeeec
Q 013871           67 M-ATNEIQFFDTTDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPA---SVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        67 ~-~~~~i~v~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~---~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      + .+|-|.||-+-..+-...  ..-...-|.+++|..+ +..|++...+..-.-|   --+||.-.-            -
T Consensus        89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavIVGsvdGNRIwgKeL------------k  155 (1189)
T KOG2041|consen   89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVIVGSVDGNRIWGKEL------------K  155 (1189)
T ss_pred             cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEEEEeeccceecchhc------------c
Confidence            7 467999998754321100  0111234789999998 4555554333210001   114554322            1


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce------eeeecC-----CCCCeEEEEEC-----
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GLVPLR-----KEGPVHDVQWS-----  204 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~------~~v~l~-----~~~~i~~v~ws-----  204 (434)
                      ...-..+.|++|...+++.-.          .|+..||  +..|.+.      +.+...     ....|-.+.|.     
T Consensus       156 g~~l~hv~ws~D~~~~Lf~~a----------nge~hly--dnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~  223 (1189)
T KOG2041|consen  156 GQLLAHVLWSEDLEQALFKKA----------NGETHLY--DNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ  223 (1189)
T ss_pred             hheccceeecccHHHHHhhhc----------CCcEEEe--cccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence            112236789998776654211          0322222  2222221      222111     01234556664     


Q ss_pred             ---cCCCEEEEEEccCCCeEEEEecc--cceeEEeCCcCeeEEEECCCCCeEEEEecCCC-----C-CeEEEEEccCCEE
Q 013871          205 ---YSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNL-----P-GDMAFWDYVDGKQ  273 (434)
Q Consensus       205 ---pdg~~~av~~g~~~~~v~l~d~~--~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~-----~-g~i~iwd~~~~~~  273 (434)
                         ||...|+|++.  .|.+.|....  .+++.--..-.+..+.|+|+|..|+++|++..     + ..|.||.. -|+.
T Consensus       224 ~v~pdrP~lavcy~--nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i  300 (1189)
T KOG2041|consen  224 PVPPDRPRLAVCYA--NGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHI  300 (1189)
T ss_pred             cCCCCCCEEEEEEc--CceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhh
Confidence               57778887654  5666665332  23322222355677899999999999997641     1 24555542 3566


Q ss_pred             EEEeeCC--CceEEEECCCCCEEEEEE
Q 013871          274 LGTTRAE--CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       274 i~~~~~~--~~~~~~wspdg~~l~tas  298 (434)
                      +.+++.+  .++.++|-..|-.++.|.
T Consensus       301 ~gtlkvpg~~It~lsWEg~gLriA~Av  327 (1189)
T KOG2041|consen  301 VGTLKVPGSCITGLSWEGTGLRIAIAV  327 (1189)
T ss_pred             eEEEecCCceeeeeEEcCCceEEEEEe
Confidence            6666544  677799998888888776

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=6.6e-05  Score=69.81  Aligned_cols=200  Identities=13%  Similarity=0.170  Sum_probs=118.6

Q ss_pred             EEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C--CeEEEEeCCCCCCce
Q 013871           13 IIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T--NEIQFFDTTDFPKGI   84 (434)
Q Consensus        13 ~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~--~~i~v~~~~~~~~~~   84 (434)
                      +|+|+-     .++++.+|..+.+.    .+..+...    ...-.+.=++.. .++|+++ .  +.+.|||+....  .
T Consensus       117 ~Litc~-----~sG~l~~~~~k~~d~hss~l~~la~g----~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--q  185 (412)
T KOG3881|consen  117 TLITCV-----SSGNLQVRHDKSGDLHSSKLIKLATG----PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--Q  185 (412)
T ss_pred             EEEEEe-----cCCcEEEEeccCCccccccceeeecC----CceeeeccCCCCCceEecCchhcccceeeeecccce--e
Confidence            455555     67999999988553    22222222    122134445544 4555553 3  689999987642  1


Q ss_pred             eee----------eecC-CeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           85 LYR----------LRVP-GVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        85 ~~~----------~~~~-~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      ...          +.++ -++++.|-|+.. ..++.     ...-+.|++|+....  .+|+.+..+......++...|+
T Consensus       186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat-----~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~  258 (412)
T KOG3881|consen  186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT-----ITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPS  258 (412)
T ss_pred             eeeccCCCCccccceeeeeeccceecCCCCCceEEE-----EecceeEEEecCccc--CcceeEeccccCcceeeeecCC
Confidence            111          1111 244555555421 22332     234468999999754  8999999999889999999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-  230 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-  230 (434)
                      |+.|++..     ..+       .|..++..+.......+. -.|.|.++.-+|++..++  +++-|.-++|||++... 
T Consensus       259 gn~Iy~gn-----~~g-------~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~la--s~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  259 GNFIYTGN-----TKG-------QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLA--SCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             CcEEEEec-----ccc-------hhheecccCceeeccccCCccCCcceEEEcCCCceEE--eeccceeEEEeecccchh
Confidence            99876532     111       133333333321111122 168999999999998888  56779999999998743 


Q ss_pred             eEEe-CCcCeeEEEE
Q 013871          231 ILEL-GSGPYNTVRW  244 (434)
Q Consensus       231 ~~~~-~~~~~~~i~~  244 (434)
                      ++.. -....|+|.+
T Consensus       325 l~kvYvKs~lt~il~  339 (412)
T KOG3881|consen  325 LHKVYVKSRLTFILL  339 (412)
T ss_pred             hhhhhhhccccEEEe
Confidence            3322 3344444443

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.34  E-value=1.3e-05  Score=76.28  Aligned_cols=274  Identities=12%  Similarity=0.078  Sum_probs=156.2

Q ss_pred             CCCCCCeeeecCCCcEEEEecCC-eEEEEeCCCCCCc-eeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013871           48 TKTTWPSIRFSSDEAVACRMATN-EIQFFDTTDFPKG-ILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~~~-~i~v~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      |...+..+.|...|..|++++++ .|.+||....... .....|..+|-.-.|-|..+ ..++     ..+.++.|++-.
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~-----~~s~dgqvr~s~  215 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIV-----TSSRDGQVRVSE  215 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCce-----eccccCceeeee
Confidence            45677789999999999999875 9999997653321 11223344454445555432 2232     345667777776


Q ss_pred             cCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CcceeeeecCC-C---CCe
Q 013871          125 CGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRK-E---GPV  198 (434)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~-~---~~i  198 (434)
                      +.............-|...+..+.--|+..+-+..+..  |..         +..+++.  ......+.-.. +   -..
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~ge--D~~---------v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE--DAV---------VFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCccccccc--ccc---------eeeeeeccCCccceeeeeccCCccceee
Confidence            65421111122333345555555555554443332211  111         1222211  11111111111 1   246


Q ss_pred             EEEEECcCCC-EEEEEEccCCCeEEEEecc-------cceeEEe--------CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871          199 HDVQWSYSGS-EFAVVYGFMPASATIFNKK-------CRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       199 ~~v~wspdg~-~~av~~g~~~~~v~l~d~~-------~~~~~~~--------~~~~~~~i~~SP~g~~l~~~~~~~~~g~  262 (434)
                      ++++..|-.. +|+|  |.+|.-+++||.+       +..+.+|        ..-.|++++||.+|.-|+++=   .+-.
T Consensus       285 ~~Ia~~P~nt~~faV--gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~  359 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAV--GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDED  359 (559)
T ss_pred             eeEecCCCCcccccc--CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccc
Confidence            7889998654 7885  8889999999875       2223333        134578999997776555444   2347


Q ss_pred             EEEEEcc--CC----------EEEEE-eeCC-Cc-e--E-EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee-
Q 013871          263 MAFWDYV--DG----------KQLGT-TRAE-CS-V--T-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK-  322 (434)
Q Consensus       263 i~iwd~~--~~----------~~i~~-~~~~-~~-~--~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~-  322 (434)
                      |+++...  .|          ..+.. +++| +. +  . --|-|..+|+++|+.      =|.|.||+-.+. ++..+ 
T Consensus       360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~Me  433 (559)
T KOG1334|consen  360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRFME  433 (559)
T ss_pred             eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHHhh
Confidence            9998533  22          12222 5566 11 1  1 468999999999997      688999998654 43332 


Q ss_pred             -ecccceeeEEEcCCCCCCCCc-hhhhh
Q 013871          323 -MFDKLFQAEWKPVSPDKFGDI-SELIK  348 (434)
Q Consensus       323 -~~~~~~~~~w~p~~~~~~~~~-~~~~~  348 (434)
                       ....+.++.=+|.-|-|.+.+ .+.+|
T Consensus       434 gDr~VVNCLEpHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  434 GDRHVVNCLEPHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             cccceEeccCCCCCCchhhccCCcccee
Confidence             334678888888888777764 44443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.31  E-value=0.0012  Score=63.00  Aligned_cols=255  Identities=14%  Similarity=0.088  Sum_probs=117.4

Q ss_pred             EcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeec---CCeeEEEEeCCC
Q 013871           32 KTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRV---PGVAAFEVSKAP  102 (434)
Q Consensus        32 d~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~---~~v~~~~~sp~~  102 (434)
                      |..||..|.++.....  |..=...-+|++||+.|++.++  +  ++.+.|+.+..   ..++..   .+.....++|+ 
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---i~QLTdg~g~~~~g~~~s~~-   91 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---ITQLTDGPGDNTFGGFLSPD-   91 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---EEE---SS-B-TTT-EE-TT-
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE---EEECccCCCCCccceEEecC-
Confidence            6678877777765432  1111224579999988887643  3  77777877743   333332   22334567777 


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCce-e-------e
Q 013871          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQS-Y-------Y  172 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~-~-------~  172 (434)
                      +..+.++..+     ..++..++.+   .+......+...-.-...|  +.+++.++.+.....|..... |       .
T Consensus        92 ~~~~~Yv~~~-----~~l~~vdL~T---~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   92 DRALYYVKNG-----RSLRRVDLDT---LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             SSEEEEEETT-----TEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             CCeEEEEECC-----CeEEEEECCc---CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            4444333222     2556666655   2222222222222223455  567777665544433332111 1       0


Q ss_pred             --cceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE-EEEE-ccC---CCeEEEEecccceeEEeCCc----CeeE
Q 013871          173 --GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF-AVVY-GFM---PASATIFNKKCRPILELGSG----PYNT  241 (434)
Q Consensus       173 --g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~-av~~-g~~---~~~v~l~d~~~~~~~~~~~~----~~~~  241 (434)
                        -...|+.+++.++ +..+.+....-+..+.|||....+ ++|. |..   +.+|.+.|..+.....++..    .+.-
T Consensus       164 a~p~~~i~~idl~tG-~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH  242 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTG-ERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH  242 (386)
T ss_dssp             C---EEEEEEETTT---EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred             hCCCceEEEEECCCC-ceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence              1235677777765 444445556678899999965544 4433 222   23566667666555555322    2233


Q ss_pred             EEECCCCCeEEEEec--CCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEc
Q 013871          242 VRWNPKGKFLCLAGF--GNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       242 i~~SP~g~~l~~~~~--~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~  299 (434)
                      =.|+|||..|..-+.  +..+..|.-+|..+++.......+..+.+--++||+.++-=++
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~  302 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGG  302 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCC
Confidence            469999996665332  2234467778888886544455556667888999998865444

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.30  E-value=0.0014  Score=61.43  Aligned_cols=252  Identities=13%  Similarity=0.137  Sum_probs=133.2

Q ss_pred             eEEecCCCcEEEEEecCCC-----CCCCcEEEEEcCCCcEEEEEeecC---cC-CCCCCeeeecCCCcEEEEec---CCe
Q 013871            4 LLTCLRVGLIIQTFQKSST-----PQEKNVILWKTETGEAVYQLFQKN---MT-KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~-----~~d~~v~iWd~~~g~~~~~~~~~~---~~-~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .+..||||+.+.+.+-+..     .-+.-|.+||..|-.....+.-..   .. ...-..++.|.||+++....   ...
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            4678999999997653211     123569999999988776544321   10 01112578999999998763   258


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eeccccee----E
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTV----Q  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~----~  146 (434)
                      |.|-|+....  ....+..++...+--++.  ..+...     ..+|.+....+...  +++.... .+|..+.-    .
T Consensus       120 VtVVDl~~~k--vv~ei~~PGC~~iyP~~~--~~F~~l-----C~DGsl~~v~Ld~~--Gk~~~~~t~~F~~~~dp~f~~  188 (342)
T PF06433_consen  120 VTVVDLAAKK--VVGEIDTPGCWLIYPSGN--RGFSML-----CGDGSLLTVTLDAD--GKEAQKSTKVFDPDDDPLFEH  188 (342)
T ss_dssp             EEEEETTTTE--EEEEEEGTSEEEEEEEET--TEEEEE-----ETTSCEEEEEETST--SSEEEEEEEESSTTTS-B-S-
T ss_pred             EEEEECCCCc--eeeeecCCCEEEEEecCC--CceEEE-----ecCCceEEEEECCC--CCEeEeeccccCCCCcccccc
Confidence            9999987732  455677777666544432  112111     22345555555532  3332111 12211110    1


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee---ecC---------CCCCeEEEEECcCCCEEEEE-
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR---------KEGPVHDVQWSYSGSEFAVV-  213 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l~---------~~~~i~~v~wspdg~~~av~-  213 (434)
                      -.+...+..+++.          +|.|  .+|.++..+......   .+-         ..|.-.-+++++..++|.|. 
T Consensus       189 ~~~~~~~~~~~F~----------Sy~G--~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  189 PAYSRDGGRLYFV----------SYEG--NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             -EEETTTTEEEEE----------BTTS--EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             cceECCCCeEEEE----------ecCC--EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            1122233333322          2333  356655555421111   110         02444567888766555543 


Q ss_pred             EccCCC-------eEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871          214 YGFMPA-------SATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       214 ~g~~~~-------~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ....++       .|.+||++..+ +..++ ..++++|..|.+.+ +|+....  .+|.|.+||..+++.+.....-
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET--TTTEEEEEETTT--EEEEE---
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEEeehhcc
Confidence            221111       68888997544 44554 56788999999998 4443332  3479999999999999888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.28  E-value=3.5e-06  Score=91.21  Aligned_cols=189  Identities=16%  Similarity=0.189  Sum_probs=125.1

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      .+.++++|..+.=+|....++      +++.++.|++|.-...  .+.++-++...+.+..+.++.+|+..-+   .+.|
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yl------tgs~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i---~d~d 2272 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYL------TGSQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGI---VDGD 2272 (2439)
T ss_pred             eecccCceeeecCCCCCceEE------ecCCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceee---eccC
Confidence            344566777776666522222      3567889999988662  3344455555667778889999987544   2233


Q ss_pred             ccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECcCCCEEEEEEcc--CCCeEEEEecc----cceeEEeCCc
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKK----CRPILELGSG  237 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~----~~~~~~~~~~  237 (434)
                      ....       +|...     ...+.-  -++...+++.|-.  ..++- .|.  .++.+.+||.-    ...++..|.+
T Consensus      2273 g~l~-------l~q~~-----pk~~~s~qchnk~~~Df~Fi~--s~~~t-ag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2273 GDLS-------LWQAS-----PKPYTSWQCHNKALSDFRFIG--SLLAT-AGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred             Ccee-------ecccC-----CcceeccccCCccccceeeee--hhhhc-cccCCCCCcccchhcccCcccceeeeecCC
Confidence            3222       22221     001100  0234556666654  22332 222  34589999973    3346677999


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ..++++|-|.-++|++||   .+|.|++||++..+++++++.       |. ...+|++++.      .+.++||++++-
T Consensus      2338 gaT~l~~~P~~qllisgg---r~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGG---RKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEF 2400 (2439)
T ss_pred             CceEEEEcCcceEEEecC---CcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEcccc
Confidence            999999999999999998   668999999999888887765       55 5678999998      999999999775

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=7.5e-06  Score=78.99  Aligned_cols=139  Identities=13%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe---CCcCeeEEEECCCC--CeEEEEecCCCCCeEEEEE
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKG--KFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~---~~~~~~~i~~SP~g--~~l~~~~~~~~~g~i~iwd  267 (434)
                      +.|.|++++|+.||..|+  +|+.|-.+.|||. +.+.++.+   |...|-++.|-|..  +++++|+.|   ..|+++|
T Consensus        49 H~GCVN~LeWn~dG~lL~--SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD---k~i~lfd  123 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLA--SGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD---KLIKLFD  123 (758)
T ss_pred             ccceecceeecCCCCEEe--ecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc---ceEEEEe
Confidence            589999999999999999  7999999999997 45555655   67778899999954  466666633   5999999


Q ss_pred             ccCC----------EEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc--e---------eeee-
Q 013871          268 YVDG----------KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS--L---------FFKK-  322 (434)
Q Consensus       268 ~~~~----------~~i~~~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~--~---------~~~~-  322 (434)
                      +.+.          +.+..+..|  .+-.++-.|++ ..|.+|+.      ||+|+-+|+...  +         +... 
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE------DGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE------DGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC------CcceeeecccCCccCCccccccHHHHHhc
Confidence            9852          223333333  33348889999 67888888      999999998441  1         1111 


Q ss_pred             -ecccceeeEEEcCCCCCCCCc
Q 013871          323 -MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 -~~~~~~~~~w~p~~~~~~~~~  343 (434)
                       ..-++.++.-+|..+.+|.-+
T Consensus       198 ~~lielk~ltisp~rp~~laVG  219 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVG  219 (758)
T ss_pred             hhhheeeeeeecCCCCceEEec
Confidence             223788999999988877643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.23  E-value=0.00028  Score=74.57  Aligned_cols=258  Identities=14%  Similarity=0.278  Sum_probs=138.1

Q ss_pred             CCCeeeecCCCcEEE-EecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871           51 TWPSIRFSSDEAVAC-RMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        51 ~~~~~~~S~d~~~la-~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      .+.+++|-.|..-++ ....|.|.+-|...... ........+|...+|||+ ...+++....     .++-++.. +  
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~D-ee~l~liT~~-----~tll~mT~-~--  139 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPD-EELLALITGR-----QTLLFMTK-D--  139 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCC-CcEEEEEeCC-----cEEEEEec-c--
Confidence            344777777665444 44678888887766432 223333458999999999 5555554321     12332222 1  


Q ss_pred             CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEE
Q 013871          130 QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQW  203 (434)
Q Consensus       130 ~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~w  203 (434)
                       -.++..+..     -....+.+-|....+.+-.       +.++---++. +       ..+.... .+....=.+|.|
T Consensus       140 -f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrg-------s~gr~~~~~~-~-------~~ek~~~~~~~~~~~~~IsW  203 (1265)
T KOG1920|consen  140 -FEPIAEKPLDADDERKSKFVNVGWGRKETQFRG-------SEGRQAARQK-I-------EKEKALEQIEQDDHKTSISW  203 (1265)
T ss_pred             -ccchhccccccccccccccceecccccceeeec-------chhhhccccc-c-------cccccccchhhccCCceEEE
Confidence             123332222     1122234444433222100       0000000000 0       0000000 000122246999


Q ss_pred             CcCCCEEEEEE---ccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEE
Q 013871          204 SYSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQL  274 (434)
Q Consensus       204 spdg~~~av~~---g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i  274 (434)
                      --||.+|||.+   .....++++||.++. +...   ..+.-.+++|-|.|.++++-.....+++|.|+..+..   +..
T Consensus       204 RgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~  282 (1265)
T KOG1920|consen  204 RGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFV  282 (1265)
T ss_pred             ccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccc
Confidence            99999999832   111259999998732 2222   2344568999999999998776656779999986532   222


Q ss_pred             EEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---eeecccceeeEEEcCCCC
Q 013871          275 GTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       275 ~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~---~~~~~~~~~~~w~p~~~~  338 (434)
                      ..+...  .+..++|+.++..|++-++.-.   ...|++|....-..|   ...+++..-+.|+|..+.
T Consensus       283 l~~p~de~~ve~L~Wns~sdiLAv~~~~~e---~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~~~  348 (1265)
T KOG1920|consen  283 LPFPLDEKEVEELAWNSNSDILAVVTSNLE---NSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVTEK  348 (1265)
T ss_pred             cCCcccccchheeeecCCCCceeeeecccc---cceEEEEEecCeEEEEEEEEeccccccccccCCCce
Confidence            222211  2566999999999998544110   334999997554332   234444444888886543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.21  E-value=0.00012  Score=77.30  Aligned_cols=207  Identities=13%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce--eeeee--cccceeEEEECCCCCeEEEEEEeccc
Q 013871           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL--ARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      ...+..++.++....+++     +++.+|+|++|++.........  +..++  ......++..-+.|+.+++.+   .|
T Consensus      1048 s~~v~k~a~s~~~~s~Fv-----sgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~D 1119 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFV-----SGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KD 1119 (1431)
T ss_pred             cccccceeecCCCCceEE-----EecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CC
Confidence            334556666666434444     3577899999998653211000  11111  112222233333344444331   11


Q ss_pred             ccCceeecceeEEEEeeCCc-c-----eeeeecCCCCCeEEE-EECcCCCEEEEEEccCCCeEEEEecccce-----eEE
Q 013871          166 KTNQSYYGESKLNYLTTDGT-H-----EGLVPLRKEGPVHDV-QWSYSGSEFAVVYGFMPASATIFNKKCRP-----ILE  233 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~-~-----~~~v~l~~~~~i~~v-~wspdg~~~av~~g~~~~~v~l~d~~~~~-----~~~  233 (434)
                             |...++.++.... +     .....+.+.|.+-++ ++.-......++++..-+.+..||.+...     -.+
T Consensus      1120 -------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1120 -------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             -------CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence                   3222333333111 0     111123345555443 33332222344467777899999987432     223


Q ss_pred             eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEE---EECCCCCEEEEEEcCCceeeCC
Q 013871          234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTS---EWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       234 ~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~---~wspdg~~l~tas~~prl~~D~  307 (434)
                      ...|.+++++.+|.+.++++|.   ..|.+.+||++=+..+.....+   .+..+   -..|.....++++..    ..|
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGt---s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~n 1265 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGT---SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNN 1265 (1431)
T ss_pred             ccccceeEEEecCCceEEEEec---CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCC
Confidence            4678999999999999999998   6689999999988777776654   33333   334444566666552    278


Q ss_pred             cEEEEeecCce
Q 013871          308 GIKIFHHNGSL  318 (434)
Q Consensus       308 ~i~iw~~~g~~  318 (434)
                      .|-+|++.+..
T Consensus      1266 evs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1266 EVSTWNMETGL 1276 (1431)
T ss_pred             ceeeeecccCc
Confidence            99999997654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.20  E-value=0.0039  Score=57.07  Aligned_cols=223  Identities=11%  Similarity=0.049  Sum_probs=118.5

Q ss_pred             eEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec-CCCcEEEEecCCeEEEEeCCCCC
Q 013871            4 LLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS-SDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S-~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      ++.|.+ +|.++++ ..    ..+.|..|+..+++.. .+...    . ...+.+. ++++++++.. +.+.++|..+..
T Consensus         4 gp~~d~~~g~l~~~-D~----~~~~i~~~~~~~~~~~-~~~~~----~-~~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~   71 (246)
T PF08450_consen    4 GPVWDPRDGRLYWV-DI----PGGRIYRVDPDTGEVE-VIDLP----G-PNGMAFDRPDGRLYVADS-GGIAVVDPDTGK   71 (246)
T ss_dssp             EEEEETTTTEEEEE-ET----TTTEEEEEETTTTEEE-EEESS----S-EEEEEEECTTSEEEEEET-TCEEEEETTTTE
T ss_pred             ceEEECCCCEEEEE-Ec----CCCEEEEEECCCCeEE-EEecC----C-CceEEEEccCCEEEEEEc-CceEEEecCCCc
Confidence            567888 5555544 31    3578999998877542 23222    2 2266777 6777766654 555666876643


Q ss_pred             Cceeeee-----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           82 KGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        82 ~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      .......     ......++.+.|++.-.+.--..........=.+|.+..   ...+....-.-.....+.|+|+|+.|
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~---~~~~~~~~~~~~~pNGi~~s~dg~~l  148 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP---DGKVTVVADGLGFPNGIAFSPDGKTL  148 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET---TSEEEEEEEEESSEEEEEEETTSSEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC---CCeEEEEecCcccccceEECCcchhe
Confidence            2222233     223577889999854222211111111110034454443   21111111111234579999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeC--Cc----ceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTD--GT----HEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~----~~~~v~l~~~-~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~  229 (434)
                      ++.- +          ....|+.++..  +.    ......+... +..-.+++..+|+.++  +....+.|.+||.+++
T Consensus       149 yv~d-s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v--a~~~~~~I~~~~p~G~  215 (246)
T PF08450_consen  149 YVAD-S----------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV--ADWGGGRIVVFDPDGK  215 (246)
T ss_dssp             EEEE-T----------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE--EEETTTEEEEEETTSC
T ss_pred             eecc-c----------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE--EEcCCCEEEEECCCcc
Confidence            6631 1          11124555543  22    0111223322 2366799999997666  3445679999999987


Q ss_pred             eeEEe--CCcCeeEEEE-CCCCCeEEEE
Q 013871          230 PILEL--GSGPYNTVRW-NPKGKFLCLA  254 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~-SP~g~~l~~~  254 (434)
                      .+..+  .....++++| -|+.+.|.+.
T Consensus       216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  216 LLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            76655  4457788888 4676655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.00011  Score=72.64  Aligned_cols=163  Identities=18%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                      ...+.+||.|+.++++..           |+-.||.  ..+.....     .|.-.+++|++ ...||+...  ..+|.+
T Consensus        35 p~~ls~npngr~v~V~g~-----------geY~iyt--~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~--~~~I~I   93 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGD-----------GEYEIYT--ALAWRNKA-----FGSGLSFVWSS-RNRYAVLES--SSTIKI   93 (443)
T ss_dssp             -SEEEE-TTSSEEEEEET-----------TEEEEEE--TTTTEEEE-----EEE-SEEEE-T-SSEEEEE-T--TS-EEE
T ss_pred             CeeEEECCCCCEEEEEcC-----------CEEEEEE--ccCCcccc-----cCceeEEEEec-CccEEEEEC--CCeEEE
Confidence            458899999999988421           2222333  11211111     35667899999 556886533  568998


Q ss_pred             E-ecccceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCC
Q 013871          224 F-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       224 ~-d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~p  301 (434)
                      | +.+...+..+. ...+..|..   |.+|++.+.    +.|.+||.++++.+..+....+..+.||++|.+++..+   
T Consensus        94 ~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~----~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t---  163 (443)
T PF04053_consen   94 YKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS----DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT---  163 (443)
T ss_dssp             EETTEE-TT-----SS-EEEEE----SSSEEEEET----TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----
T ss_pred             EEcCccccceEEcCCcccceEEc---CcEEEEECC----CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---
Confidence            6 55544433342 223555555   898888763    26999999999999999887778899999999999987   


Q ss_pred             ceeeCCcEEEEeecCc------------eeee-ee-cccceeeEEEcCCCCCCCC
Q 013871          302 RLQIDNGIKIFHHNGS------------LFFK-KM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~------------~~~~-~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                          ++.+.|.+++-.            .+.. .+ ...+....|.-+ -.+|+.
T Consensus       164 ----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT  213 (443)
T PF04053_consen  164 ----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTT  213 (443)
T ss_dssp             ----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-
T ss_pred             ----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEc
Confidence                679999988665            2222 22 567888888876 445544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.20  E-value=0.00045  Score=63.47  Aligned_cols=72  Identities=15%  Similarity=0.248  Sum_probs=57.3

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      +.+++..+.|.|....+.  +|..+.++.+||+-+..  ..+  .|...+..+.+-+.-+.+.+++   .+|.|.+||.+
T Consensus       196 h~~~~~~l~Wd~~~~~Lf--Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn  270 (404)
T KOG1409|consen  196 HTGEVTCLKWDPGQRLLF--SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMN  270 (404)
T ss_pred             cccceEEEEEcCCCcEEE--eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecc
Confidence            478999999998776666  68889999999985433  222  3677888888888888888888   77899999987


Q ss_pred             C
Q 013871          270 D  270 (434)
Q Consensus       270 ~  270 (434)
                      .
T Consensus       271 ~  271 (404)
T KOG1409|consen  271 V  271 (404)
T ss_pred             c
Confidence            4

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.20  E-value=0.00028  Score=69.45  Aligned_cols=140  Identities=12%  Similarity=0.212  Sum_probs=85.5

Q ss_pred             ceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee---ec
Q 013871          118 ASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PL  192 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v---~l  192 (434)
                      +.+-++.+..   . .+..+..  ...+...+.||....+.+..........+... -+..+|-+.  +.+-.++   .+
T Consensus       184 aNl~L~~~~~---~-klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~-~d~ciYE~~--r~klqrvsvtsi  256 (545)
T PF11768_consen  184 ANLHLLSCSG---G-KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPS-ADSCIYECS--RNKLQRVSVTSI  256 (545)
T ss_pred             ccEEEEEecC---C-cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCce-eEEEEEEee--cCceeEEEEEEE
Confidence            4566676654   1 2222222  23445666777644444444333222222211 112233332  2222222   23


Q ss_pred             CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          193 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       193 ~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .....|.+++++|+...|++  |..|+.+.+||......... ..-..+.++|+|+|.++++|+   .+|.|.+||+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvl--GC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A  329 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVL--GCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA  329 (545)
T ss_pred             ecCCcceEEecCcccceEEE--EecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence            34778999999999999995  88999999999876543322 334557899999999999998   67899999976

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.19  E-value=0.0005  Score=69.31  Aligned_cols=121  Identities=15%  Similarity=0.245  Sum_probs=80.3

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-------------eEE--eCCcCeeEEEECCCCCeEEEEecCCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-------------ILE--LGSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-------------~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      ....+.+.+||||+++++ ++.....+.++|++...             +.+  ++.+|. ..+|.++|....+.-   .
T Consensus       320 GKsPHGV~vSPDGkylyV-anklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf---~  394 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIA-NGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLF---L  394 (635)
T ss_pred             CCCccceEECCCCCEEEE-eCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEe---e
Confidence            346689999999999987 57777899999986422             111  244553 467899998555554   4


Q ss_pred             CCeEEEEEccC----------CEEEEEeeCC-CceEEE------ECCCCCEEEEEEcCCceee-------CCcEEEEeec
Q 013871          260 PGDMAFWDYVD----------GKQLGTTRAE-CSVTSE------WSPDGRYFMTATTAPRLQI-------DNGIKIFHHN  315 (434)
Q Consensus       260 ~g~i~iwd~~~----------~~~i~~~~~~-~~~~~~------wspdg~~l~tas~~prl~~-------D~~i~iw~~~  315 (434)
                      +..|..||+.+          ...+..+.-| .+-++.      -.|||++|++.....+-|.       -..-+|.|++
T Consensus       395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIs  474 (635)
T PRK02888        395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDIS  474 (635)
T ss_pred             cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEcc
Confidence            56999999876          2344444433 222333      3899999999876554221       2346788888


Q ss_pred             Cceee
Q 013871          316 GSLFF  320 (434)
Q Consensus       316 g~~~~  320 (434)
                      |..+.
T Consensus       475 gdkM~  479 (635)
T PRK02888        475 GDKMK  479 (635)
T ss_pred             CCeeE
Confidence            87543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.17  E-value=4.4e-05  Score=69.89  Aligned_cols=247  Identities=11%  Similarity=0.174  Sum_probs=137.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCc-ee----eeee------------cCCeeEEEEeCCCCCeEEEEec
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKG-IL----YRLR------------VPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~-~~----~~~~------------~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      +.+.++.|..+|.+||+|. +|.|.+|.-...... ..    .+.|            .+.|..+.|.++++..  .|..
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a--~FLl  103 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA--EFLL  103 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc--EEEE
Confidence            5566899999999999995 579988875442221 00    0011            1256777887764422  1211


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-
Q 013871          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-  190 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-  190 (434)
                        .+.+.+|++|.+....   ..  +     +...+.+..+-..+   +               .|. +.+.+..+..+ 
T Consensus       104 --stNdktiKlWKi~er~---~k--~-----~~~~~~~~~~~~~~---~---------------~lr-~p~~~~~~~~ve  152 (433)
T KOG1354|consen  104 --STNDKTIKLWKIRERG---SK--K-----EGYNLPEEGPPGTI---T---------------SLR-LPVEGRHDLEVE  152 (433)
T ss_pred             --ecCCcceeeeeeeccc---cc--c-----ccccccccCCCCcc---c---------------eee-ceeeccccceee
Confidence              1344578899886521   10  1     11122221110000   0               000 00001111111 


Q ss_pred             -------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cce---eEEeC-------CcCeeEEEECCCCC-eE
Q 013871          191 -------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRP---ILELG-------SGPYNTVRWNPKGK-FL  251 (434)
Q Consensus       191 -------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~---~~~~~-------~~~~~~i~~SP~g~-~l  251 (434)
                             .-.+...|+++.++.|+..|.   ...|=+|.+|++. ..+   +.++-       +.-+++..|+|.-. .+
T Consensus       153 a~prRv~aNaHtyhiNSIS~NsD~Et~l---SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f  229 (433)
T KOG1354|consen  153 ASPRRVYANAHTYHINSISVNSDKETFL---SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVF  229 (433)
T ss_pred             eeeeeeccccceeEeeeeeecCccceEe---eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEE
Confidence                   112356788999999888887   3345689999885 222   23321       23467888999765 44


Q ss_pred             EEEecCCCCCeEEEEEccCCE-------EEEEeeC-----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          252 CLAGFGNLPGDMAFWDYVDGK-------QLGTTRA-----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~-------~i~~~~~-----------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      +..+   ..|+|++.|++...       +......           ..++++.||++|+|+++-..       .+|+|||
T Consensus       230 ~YSS---SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-------ltvk~wD  299 (433)
T KOG1354|consen  230 VYSS---SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-------LTVKLWD  299 (433)
T ss_pred             EEec---CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-------ceeEEEe
Confidence            4444   55899999988421       1111111           14556999999999998653       7999999


Q ss_pred             ec--Cceeeeeec--------------c---cceeeEEEcCCCCCCCC
Q 013871          314 HN--GSLFFKKMF--------------D---KLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       314 ~~--g~~~~~~~~--------------~---~~~~~~w~p~~~~~~~~  342 (434)
                      ++  .+.+...+.              +   .-+++.|+-.+..+++.
T Consensus       300 ~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG  347 (433)
T KOG1354|consen  300 LNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG  347 (433)
T ss_pred             ccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence            83  333322211              1   23678898887777765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.13  E-value=0.0013  Score=60.91  Aligned_cols=213  Identities=12%  Similarity=0.064  Sum_probs=117.8

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      -.|||||++|.|.+.......+.|-|||+. +-+.+..|.....  . -..+.|.|||+.|+.+..+- .-  -++..  
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI--G-PHel~l~pDG~tLvVANGGI-~T--hpd~G--  127 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI--G-PHELLLMPDGETLVVANGGI-ET--HPDSG--  127 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc--C-hhhEEEcCCCCEEEEEcCCC-cc--CcccC--
Confidence            469999999999996655556899999998 5567778876543  2 23688999998888775431 10  00100  


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871           84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                       ..++.++     .+    .+.+++....++.   .+.-|.++.          ..++.++..+.|+++|..++.+ +-.
T Consensus       128 -R~kLNl~-----tM----~psL~~ld~~sG~---ll~q~~Lp~----------~~~~lSiRHLa~~~~G~V~~a~-Q~q  183 (305)
T PF07433_consen  128 -RAKLNLD-----TM----QPSLVYLDARSGA---LLEQVELPP----------DLHQLSIRHLAVDGDGTVAFAM-QYQ  183 (305)
T ss_pred             -ceecChh-----hc----CCceEEEecCCCc---eeeeeecCc----------cccccceeeEEecCCCcEEEEE-ecC
Confidence             1122221     11    1223322222211   223333322          1244456678899998754332 221


Q ss_pred             ccccCceeecceeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-eCC
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGS  236 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~~~  236 (434)
                      .+...    ...-|.... .+..-..+...      -.+.|-+|+++++|..+++ +.-.-+.+.+||.....+.. ..-
T Consensus       184 g~~~~----~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~-tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  184 GDPGD----APPLVALHR-RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAV-TSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             CCCCc----cCCeEEEEc-CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEE-ECCCCCEEEEEECCCCCEeecccc
Confidence            11111    001112221 11111111111      1578999999999999987 56667799999987655443 344


Q ss_pred             cCeeEEEECCCCCeEEEEec
Q 013871          237 GPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~  256 (434)
                      ..+..++-.+++ ++++.|.
T Consensus       258 ~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  258 PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             CceeeeeecCCc-eEEeCCC
Confidence            455566766766 6666553

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.11  E-value=0.00033  Score=68.55  Aligned_cols=188  Identities=10%  Similarity=0.075  Sum_probs=111.8

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee--------------------cCCCcEEEE
Q 013871            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF--------------------SSDEAVACR   66 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~--------------------S~d~~~la~   66 (434)
                      |+|-+.|+|...     .|+.++|||+.+++.-..|...........+..|                    +-|-..++.
T Consensus         1 ~~~~~~~~A~~~-----~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    1 SPPALDYFALST-----GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             CCchhheEeecC-----CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence            356677888766     7899999999988765555432211111113333                    224456666


Q ss_pred             ec-CCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           67 MA-TNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      +. .+.|.+|++...+......  .|..+|..+.++.+-+   ++|   +.+.+..+..|+...   ...++.....+..
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~---ciy---S~~ad~~v~~~~~~~---~~~~~~~~~~~~~  146 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG---CIY---SVGADLKVVYILEKE---KVIIRIWKEQKPL  146 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC---ceE---ecCCceeEEEEeccc---ceeeeeeccCCCc
Confidence            64 4799999987755322111  2345677777765521   122   346677888888766   5556655555666


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC-----CCEEEEEEccC
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS-----GSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd-----g~~~av~~g~~  217 (434)
                      ..++..+|||..+++. +.             .|..+++... +....+ .+.++|..++|--+     |.+|... ..+
T Consensus       147 ~~sl~is~D~~~l~~a-s~-------------~ik~~~~~~k-evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~  210 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTA-SR-------------QIKVLDIETK-EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAA  210 (541)
T ss_pred             cceEEEcCCCCEEEec-cc-------------eEEEEEccCc-eEEEEecCCCcceEEEEEEEeccccccceeeec-ccc
Confidence            6788899998876542 11             2444444443 333333 35889999999876     6676642 223


Q ss_pred             CCeEEEE
Q 013871          218 PASATIF  224 (434)
Q Consensus       218 ~~~v~l~  224 (434)
                      ..-+.+|
T Consensus       211 ~r~i~~w  217 (541)
T KOG4547|consen  211 ERGITVW  217 (541)
T ss_pred             ccceeEE
Confidence            3355555

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.09  E-value=0.0054  Score=62.08  Aligned_cols=102  Identities=13%  Similarity=0.157  Sum_probs=71.9

Q ss_pred             ECcCCCEEEEEEccCCCeEEEEeccc-----ce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKKC-----RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--  273 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~~-----~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--  273 (434)
                      +.++|++..+  +  .++|.++|.+.     .. +..+. ...-..+.+||||+++++++.  +..++.|.|+.+.+.  
T Consensus       284 ~vkdGK~~~V--~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        284 AVKAGKFKTI--G--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hhhCCCEEEE--C--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhh
Confidence            3467876554  2  45899999876     23 33332 334467999999999988764  457999999987542  


Q ss_pred             ----------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          274 ----------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       274 ----------i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                                +...+ +....+.+|+++|..+.|--.      |+.|..|++..
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~------dsqv~kwn~~~  405 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL------DSQIVKWNIEA  405 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEee------cceeEEEehHH
Confidence                      33332 336778899999986666555      99999999854

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.08  E-value=0.00019  Score=64.56  Aligned_cols=132  Identities=13%  Similarity=0.144  Sum_probs=92.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-----eCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEc
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-----~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      +.++....|+-....+++ +|+.|+.+..||++.-..+.     .|...|.+|.=|| .+.+|++|++|.   .|++||+
T Consensus       165 e~E~Wta~f~~~~pnlvy-tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~Dt  240 (339)
T KOG0280|consen  165 EFEAWTAKFSDKEPNLVY-TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDT  240 (339)
T ss_pred             ceeeeeeecccCCCceEE-ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeeh
Confidence            567777888876666665 79999999999998322222     2677788888877 467999999776   9999999


Q ss_pred             cCC-EEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee--------eeeecccceeeEEEcC
Q 013871          269 VDG-KQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--------FKKMFDKLFQAEWKPV  335 (434)
Q Consensus       269 ~~~-~~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~--------~~~~~~~~~~~~w~p~  335 (434)
                      ++. +.+.... +.++..+.|+|--.+.+.+.+     |-++++|-+++....        ++.+..-.|...|+-.
T Consensus       241 Rnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~  312 (339)
T KOG0280|consen  241 RNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK  312 (339)
T ss_pred             hcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeeccccccc
Confidence            854 5554443 348888999997665444444     278999998865422        2233445788888443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.06  E-value=1.4e-05  Score=50.18  Aligned_cols=36  Identities=28%  Similarity=0.631  Sum_probs=32.0

Q ss_pred             EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          272 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      +++..+.+|  .+..++|+|++.+|++++.      |+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence            567788877  6667999999999999999      99999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=2.3e-05  Score=71.65  Aligned_cols=136  Identities=12%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------e-eEEeCCcCeeEEEECC-C
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------P-ILELGSGPYNTVRWNP-K  247 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~-~~~~~~~~~~~i~~SP-~  247 (434)
                      .+-++++.+++...+.  ..+.|.+.+|.-.++.+.  .|...+.|..+|+++.      + ..-+|...++++..=. +
T Consensus       235 qv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~--~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s  310 (425)
T KOG2695|consen  235 QVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVF--NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFS  310 (425)
T ss_pred             eeEEEEeecccccccc--cchhHHHHHhcccCCeeE--ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccc
Confidence            3444555555443333  367888889987666555  5999999999999755      2 2334888888877655 5


Q ss_pred             CCeEEEEecCCCCCeEEEEEccCCEE---EEEeeCCCc----eEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Ccee
Q 013871          248 GKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAECS----VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF  319 (434)
Q Consensus       248 g~~l~~~~~~~~~g~i~iwd~~~~~~---i~~~~~~~~----~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~  319 (434)
                      +++|+..+   ++|+|.+||.+--++   +..+++|--    .-+...+....+++++.      |--.|||.+. |.++
T Consensus       311 ~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~ghLl  381 (425)
T KOG2695|consen  311 QQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGHLL  381 (425)
T ss_pred             cceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCcee
Confidence            77888777   889999999875555   888888722    22666788888999888      9999999995 6676


Q ss_pred             eeeec
Q 013871          320 FKKMF  324 (434)
Q Consensus       320 ~~~~~  324 (434)
                      -..++
T Consensus       382 ~tipf  386 (425)
T KOG2695|consen  382 CTIPF  386 (425)
T ss_pred             eccCC
Confidence            65544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.0015  Score=64.74  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=72.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      .+.|+++|+|++++.++      |+.-.|+.....+. ..+..      .. .+.|+++++|++.-.+++|.|+......
T Consensus        35 p~~ls~npngr~v~V~g------~geY~iyt~~~~r~-k~~G~------g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCG------DGEYEIYTALAWRN-KAFGS------GL-SFVWSSRNRYAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             -SEEEE-TTSSEEEEEE------TTEEEEEETTTTEE-EEEEE-------S-EEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred             CeeEEECCCCCEEEEEc------CCEEEEEEccCCcc-cccCc------ee-EEEEecCccEEEEECCCeEEEEEcCccc
Confidence            46899999999999966      78888887544433 22221      12 6789998887777778899998543322


Q ss_pred             CceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           82 KGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        82 ~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                        ....+..+. +..+  .+  +..+++-      ..+.|.+||..+   ++.+++.....  +..+.||++|+.+++++
T Consensus       101 --~~k~i~~~~~~~~I--f~--G~LL~~~------~~~~i~~yDw~~---~~~i~~i~v~~--vk~V~Ws~~g~~val~t  163 (443)
T PF04053_consen  101 --VVKSIKLPFSVEKI--FG--GNLLGVK------SSDFICFYDWET---GKLIRRIDVSA--VKYVIWSDDGELVALVT  163 (443)
T ss_dssp             --TT-----SS-EEEE--E---SSSEEEE------ETTEEEEE-TTT-----EEEEESS-E---EEEEE-TTSSEEEEE-
T ss_pred             --cceEEcCCcccceE--Ec--CcEEEEE------CCCCEEEEEhhH---cceeeEEecCC--CcEEEEECCCCEEEEEe
Confidence              112333331 3322  11  3444432      123699999988   77777776542  57899999999988763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.00  E-value=0.001  Score=68.30  Aligned_cols=164  Identities=12%  Similarity=0.170  Sum_probs=88.2

Q ss_pred             CCeeEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871           91 PGVAAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      ..+.+.++||++ ..+++.. ......+..-.||-.+.   +......+.- .......|+|+|..|.+.....  ....
T Consensus       350 ~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~---gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~--~~~~  422 (591)
T PRK13616        350 GNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL---GGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGN--TVVR  422 (591)
T ss_pred             cCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC---CCcceeeecC-CCCCCceECCCCCceEEEecCc--ceEE
Confidence            467788999984 4444432 21122223334444432   1222233222 2366889999999887764211  0000


Q ss_pred             e--eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE---Eecccce--e---EEe--C-C
Q 013871          170 S--YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI---FNKKCRP--I---LEL--G-S  236 (434)
Q Consensus       170 ~--~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l---~d~~~~~--~---~~~--~-~  236 (434)
                      .  ..+...+|.+.+.+.....   ...+.|.++.|||||.+++++.+   ++|.+   -......  +   ..+  . .
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~  496 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLG  496 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccC
Confidence            0  0123356766666543222   22568999999999999999864   46666   3322221  1   112  1 2


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .....+.|.+++.++ ++..+ .+..++..++.
T Consensus       497 ~~~~~l~W~~~~~L~-V~~~~-~~~~v~~v~vD  527 (591)
T PRK13616        497 DTAVSLDWRTGDSLV-VGRSD-PEHPVWYVNLD  527 (591)
T ss_pred             CccccceEecCCEEE-EEecC-CCCceEEEecC
Confidence            235789999999965 44432 22334444444

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.98  E-value=0.0026  Score=70.07  Aligned_cols=130  Identities=10%  Similarity=0.011  Sum_probs=86.7

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-C----------------cCeeEEEECCCCCeEEEEecCCCCC
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-S----------------GPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-~----------------~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      ++++++|++..+.+ +....+.|++||.....+..+. .                ..-+.|+|+|+|+.|+++..++  +
T Consensus       686 ~gVa~dp~~g~LyV-ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~  762 (1057)
T PLN02919        686 WDVCFEPVNEKVYI-AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--S  762 (1057)
T ss_pred             eEEEEecCCCeEEE-EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--C
Confidence            58999996555554 4566779999998655443321 0                1224599999999888877654  7


Q ss_pred             eEEEEEccCCEEEEEee-----------------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          262 DMAFWDYVDGKQLGTTR-----------------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~-----------------------~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      .|++||++++.......                       ...+..++++++|..+++-+.      ++.|++||..+..
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~  836 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKR  836 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCe
Confidence            99999998764321110                       012346899999997766666      8999999996654


Q ss_pred             eeee----------------ecccceeeEEEcCCC
Q 013871          319 FFKK----------------MFDKLFQAEWKPVSP  337 (434)
Q Consensus       319 ~~~~----------------~~~~~~~~~w~p~~~  337 (434)
                      +...                .+.+...+++.|++.
T Consensus       837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~  871 (1057)
T PLN02919        837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR  871 (1057)
T ss_pred             EEEEeccCCcCCCCCcccccccCCceEEEEeCCCC
Confidence            4321                122456677888775

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0009  Score=62.76  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=57.8

Q ss_pred             CcceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013871            1 MLLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT   77 (434)
Q Consensus         1 ~V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~   77 (434)
                      .|+.|+|||... .|..++     -+..|+|.|+++...+.+|...+   ..| +++|.-|+...++++  +|.|.|||+
T Consensus       195 ~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~~---~~w-SC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  195 FIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAYN---QIW-SCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             hhhhhccCccccceeeeec-----cCceEEEEecccceeeeheeccC---Cce-eeeeccCCcceeEEeccCceEEEEEc
Confidence            478899999988 455555     67899999999999998888764   678 889999887666554  479999999


Q ss_pred             CCCC
Q 013871           78 TDFP   81 (434)
Q Consensus        78 ~~~~   81 (434)
                      ...+
T Consensus       266 R~~~  269 (463)
T KOG1645|consen  266 RQPE  269 (463)
T ss_pred             cCCC
Confidence            7754

>PRK10115 protease 2; Provisional

Probab=97.97  E-value=0.013  Score=61.79  Aligned_cols=250  Identities=12%  Similarity=0.074  Sum_probs=124.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-------CeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-------NEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-------~~i~v   74 (434)
                      +..+.+||||++|+......+.+.-.|+|-|+.+|+.+......    .. ..+.|++|++.|+....       ..|..
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            45678999999999877555555678999999988643222111    12 25899999987766521       36777


Q ss_pred             EeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           75 FDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +++.+..  .............-..+.+..+..+.+..  ..+..+.+.+++.+... .........-......+  ...
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~--~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~  278 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHL--ASATTSEVLLLDAELAD-AEPFVFLPRRKDHEYSL--DHY  278 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEE--ECCccccEEEEECcCCC-CCceEEEECCCCCEEEE--EeC
Confidence            8877652  11122211111221223332234433322  23344677787753311 22111111111111111  122


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCC--cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~  228 (434)
                      +..+.+.+..+.  .      ...|..+.+..  .....++-.....|.++.++  ++.+++. ...++  .+.++|..+
T Consensus       279 ~~~ly~~tn~~~--~------~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~  347 (686)
T PRK10115        279 QHRFYLRSNRHG--K------NFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKT  347 (686)
T ss_pred             CCEEEEEEcCCC--C------CceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCC
Confidence            355554432211  1      11244444331  11222222123467788887  4566654 44455  556667655


Q ss_pred             ceeEEeC-Cc--CeeEEEEC--CCCC-eEEEEecCCCCCeEEEEEccCCE
Q 013871          229 RPILELG-SG--PYNTVRWN--PKGK-FLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       229 ~~~~~~~-~~--~~~~i~~S--P~g~-~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      ..+..+. ..  .+..+.++  +++. +++..+.-...+.++.+|..+++
T Consensus       348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        348 REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            4455443 22  22333455  4444 44444433467899999998764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.96  E-value=0.0036  Score=55.86  Aligned_cols=235  Identities=10%  Similarity=0.068  Sum_probs=120.4

Q ss_pred             CCcEEEEEcCCCc-EEEEEeecCcCCCCCCeeeecC-----CCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEE
Q 013871           25 EKNVILWKTETGE-AVYQLFQKNMTKTTWPSIRFSS-----DEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFE   97 (434)
Q Consensus        25 d~~v~iWd~~~g~-~~~~~~~~~~~~~~~~~~~~S~-----d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~   97 (434)
                      ..+|-+|++.+.. .+..+.+         .+.|.|     ..-+||.+ ..++..+|...+.+. . .++....+.++.
T Consensus        51 t~sv~i~~~y~N~~~iv~~y~---------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h-~~~cd~snn~v~  119 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEFYT---------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-H-LYQCDVSNNDVT  119 (344)
T ss_pred             eeeeEeccccCCchhhEEeee---------cccccchHhhccccEEEeccccceeeeecccCccc-c-eeeecccccchh
Confidence            3567788875442 2333322         234544     23355544 568999999875332 1 122211122222


Q ss_pred             EeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee
Q 013871           98 VSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK  176 (434)
Q Consensus        98 ~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~  176 (434)
                      +.... +...-+++   ...+.+++++.+.....+..   ..+.......+..++|++++.++.    | +.+       
T Consensus       120 ~~~r~cd~~~~~~i---~sndht~k~~~~~~~s~~~~---~h~~~~~~ns~~~snd~~~~~~Vg----d-s~~-------  181 (344)
T KOG4532|consen  120 LVKRYCDLKFPLNI---ASNDHTGKTMVVSGDSNKFA---VHNQNLTQNSLHYSNDPSWGSSVG----D-SRR-------  181 (344)
T ss_pred             hhhhhcccccceee---ccCCcceeEEEEecCcccce---eeccccceeeeEEcCCCceEEEec----C-CCc-------
Confidence            21110 00000011   12334556666654221222   222223356788899999876652    1 111       


Q ss_pred             EEEEeeCCcceeeee--c-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eE------EeCCcCeeEEEEC
Q 013871          177 LNYLTTDGTHEGLVP--L-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--IL------ELGSGPYNTVRWN  245 (434)
Q Consensus       177 l~~l~~~~~~~~~v~--l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~------~~~~~~~~~i~~S  245 (434)
                      ++++.++...+..+.  + +.+..-....|+.....||+  +..|+.+.|||++...  ..      .-|.+.+..+.||
T Consensus       182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv--~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs  259 (344)
T KOG4532|consen  182 VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV--VFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFS  259 (344)
T ss_pred             ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE--EecCCcEEEEEecccccchhhhcccCCCCCCceEEEEec
Confidence            233333332222221  1 12334457889999999996  6789999999997432  11      1278899999999


Q ss_pred             CCCC--eEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEE
Q 013871          246 PKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM  295 (434)
Q Consensus       246 P~g~--~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~  295 (434)
                      |.|-  +|...-   .-+.+.+.|+++++....+.-+.  ...++|..+.+.
T Consensus       260 l~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~if  306 (344)
T KOG4532|consen  260 LYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIF  306 (344)
T ss_pred             CCCcceEEEEec---CcceEEEEEcccCceeeEEecCc--cccccccccccc
Confidence            9775  343332   23579999999885443332211  124555555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.95  E-value=0.0026  Score=57.37  Aligned_cols=40  Identities=13%  Similarity=0.300  Sum_probs=32.8

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      ....+-.+..||||.+|++..   ..|.|.+|++-+.++....
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih---~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIH---FSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEE---cCCeEEEEecCcchhhccc
Confidence            356678899999999999998   6689999999877665544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.94  E-value=0.00017  Score=74.89  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee---EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          191 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       191 ~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~---~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ...++|.|.++.|+-||++++  +-++|..+++|++...+.   ..| |...+-.+.|.|+  .+++++-   +-+.++|
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~--s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ge---dctcrvW  243 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIA--SVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGE---DCTCRVW  243 (967)
T ss_pred             ecccCCceEEEEEccCCcEEE--EEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEecc---ceEEEEE
Confidence            455799999999999999999  467889999999975443   234 7888899999999  8888984   4599999


Q ss_pred             EccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          267 DYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       267 d~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      +.+ ++.+..+..|   .+..++.+++...++|++.      |+++++|++.+..
T Consensus       244 ~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  244 GVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG  291 (967)
T ss_pred             ecc-cceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence            654 4555566665   5566899999889999998      9999999997653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.90  E-value=0.00025  Score=66.29  Aligned_cols=87  Identities=15%  Similarity=0.034  Sum_probs=64.5

Q ss_pred             eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec-ccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871          187 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       187 ~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~-~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~  262 (434)
                      .+...+.+..-+.+++||||+++++  +.+.|.+|++-.. .+..+..|   |+..|..++.-++ ..|+++|.   |++
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~Ii--taDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG---D~t  216 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFII--TADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG---DKT  216 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEE--EecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC---CCc
Confidence            3445566677889999999997777  6888999988554 33444444   7788888888764 45777774   459


Q ss_pred             EEEEEccCCEEEEEeeC
Q 013871          263 MAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~  279 (434)
                      |++||..+++++.++..
T Consensus       217 lr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  217 LRLWDITSGKLLDTCDL  233 (390)
T ss_pred             EEEEecccCCcccccch
Confidence            99999999998876654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.89  E-value=0.013  Score=58.16  Aligned_cols=242  Identities=12%  Similarity=0.105  Sum_probs=131.6

Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      -.++|.+.......    .-.+..+.+||+ +.++|+.....++.-..++++++.+   ++.+.. .+.......+.|.+
T Consensus       109 evllD~n~l~~~~~----~~~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~t---g~~l~d-~i~~~~~~~~~W~~  179 (414)
T PF02897_consen  109 EVLLDPNELAKDGG----YVSLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLET---GKFLPD-GIENPKFSSVSWSD  179 (414)
T ss_dssp             EEEEEGGGGSTTSS-----EEEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTT---TEEEEE-EEEEEESEEEEECT
T ss_pred             EEEEcchHhhccCc----eEEeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCC---CcCcCC-cccccccceEEEeC
Confidence            55667655432211    112446789999 6788877776666777899999987   544432 22222222399999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecC-CCCC--eEEEEECcCCCEEEEEEccC-C-CeEEEEe
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLR-KEGP--VHDVQWSYSGSEFAVVYGFM-P-ASATIFN  225 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~-~~~~--i~~v~wspdg~~~av~~g~~-~-~~v~l~d  225 (434)
                      +|+.+++....+......+.+ ...++...+...... .+-++ ...+  ...+..++|++++++..... . ..+.+.|
T Consensus       180 d~~~~~y~~~~~~~~~~~~~~-~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d  258 (414)
T PF02897_consen  180 DGKGFFYTRFDEDQRTSDSGY-PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD  258 (414)
T ss_dssp             TSSEEEEEECSTTTSS-CCGC-CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred             CCCEEEEEEeCcccccccCCC-CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence            999887754322111000111 123555544333222 22222 2222  56899999999888744433 3 3677778


Q ss_pred             cccc-----eeEEe--CC-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCCCC
Q 013871          226 KKCR-----PILEL--GS-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPDGR  292 (434)
Q Consensus       226 ~~~~-----~~~~~--~~-~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspdg~  292 (434)
                      +...     ....+  .. +....+... .+.+++....+..++.|.-.++.+..    ....+.. .......++..+.
T Consensus       259 ~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~  337 (414)
T PF02897_consen  259 LDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD  337 (414)
T ss_dssp             CCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT
T ss_pred             ccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC
Confidence            7653     22222  22 222333333 45566555554457888888888653    2122222 2445567777788


Q ss_pred             EEEEEEcCCceeeCCcEEEEeec-Cceeeeeecccc
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFDKL  327 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~~~  327 (434)
                      +|+.....   .+...|+++++. +...........
T Consensus       338 ~Lvl~~~~---~~~~~l~v~~~~~~~~~~~~~~p~~  370 (414)
T PF02897_consen  338 YLVLSYRE---NGSSRLRVYDLDDGKESREIPLPEA  370 (414)
T ss_dssp             EEEEEEEE---TTEEEEEEEETT-TEEEEEEESSSS
T ss_pred             EEEEEEEE---CCccEEEEEECCCCcEEeeecCCcc
Confidence            88877651   112358889999 777776655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.88  E-value=5.2e-05  Score=47.49  Aligned_cols=31  Identities=32%  Similarity=0.752  Sum_probs=28.3

Q ss_pred             eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       234 ~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      -|.+.+++|+|+|++++|++++   .|+.|++||
T Consensus         9 ~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd   39 (39)
T PF00400_consen    9 GHSSSINSIAWSPDGNFLASGS---SDGTIRVWD   39 (39)
T ss_dssp             SSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred             CCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence            3789999999999999999999   556999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=97.84  E-value=0.00081  Score=69.99  Aligned_cols=191  Identities=9%  Similarity=0.050  Sum_probs=117.8

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013871            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +.-+.+.++.+.     .++.+.|||...+..+........ .-.....+.++++.-+++++ .-++|.+|+....+...
T Consensus        95 l~~e~k~i~l~~-----~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~  169 (967)
T KOG0974|consen   95 LFEENKKIALVT-----SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI  169 (967)
T ss_pred             hhhhcceEEEEE-----cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence            444566777777     678899999877765554433210 00011134567788888887 45899999876333222


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....|...+-++.+|-+ +.+++.+.     .+..+|+|.+.+.                                    
T Consensus       170 ~l~GHeG~iF~i~~s~d-g~~i~s~S-----dDRsiRlW~i~s~------------------------------------  207 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLD-GRYIASVS-----DDRSIRLWPIDSR------------------------------------  207 (967)
T ss_pred             eecccCCceEEEEEccC-CcEEEEEe-----cCcceeeeecccc------------------------------------
Confidence            23344444555555554 33343332     2234555555441                                    


Q ss_pred             cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--C-CcCeeE
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--G-SGPYNT  241 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~-~~~~~~  241 (434)
                                         .. ..-+-+.+...|.++.+.|+  +++  +...|-+.++|+..+.++..+  | ...+-.
T Consensus       208 -------------------~~-~~~~~fgHsaRvw~~~~~~n--~i~--t~gedctcrvW~~~~~~l~~y~~h~g~~iw~  263 (967)
T KOG0974|consen  208 -------------------EV-LGCTGFGHSARVWACCFLPN--RII--TVGEDCTCRVWGVNGTQLEVYDEHSGKGIWK  263 (967)
T ss_pred             -------------------cc-cCcccccccceeEEEEeccc--eeE--EeccceEEEEEecccceehhhhhhhhcceeE
Confidence                               10 00122334788999999998  455  577888999998877666555  3 456778


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++..++...+++++   .||.+++||+...
T Consensus       264 ~~~~~~~~~~vT~g---~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  264 IAVPIGVIIKVTGG---NDSTLKLWDLNGR  290 (967)
T ss_pred             EEEcCCceEEEeec---cCcchhhhhhhcc
Confidence            89988888888888   5579999998753

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.82  E-value=0.03  Score=52.65  Aligned_cols=262  Identities=13%  Similarity=0.140  Sum_probs=135.2

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec----
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV----   90 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~----   90 (434)
                      ..+.|.|..+++.+..+...     -...+..|||++.++...           .+-|.+||..+........+..    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g-----~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG-----FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeecc-----cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            57999999999988877653     233577899999887541           1479999998854322222221    


Q ss_pred             ---CCeeEEEEeCCCCCeEEEE--ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE-EECCCCCeEEEEEEecc
Q 013871           91 ---PGVAAFEVSKAPGSHVAVF--VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL-NWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        91 ---~~v~~~~~sp~~~~~ia~~--~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~-~ws~~G~~l~~~~~~~~  164 (434)
                         .....+.+|++ +..+.++  .|.     ..|.|.|+..   ++.+.....-.  ...+ -+.+++ +..+|    .
T Consensus        92 ~~~~~~~~~~ls~d-gk~~~V~N~TPa-----~SVtVVDl~~---~kvv~ei~~PG--C~~iyP~~~~~-F~~lC----~  155 (342)
T PF06433_consen   92 QVVPYKNMFALSAD-GKFLYVQNFTPA-----TSVTVVDLAA---KKVVGEIDTPG--CWLIYPSGNRG-FSMLC----G  155 (342)
T ss_dssp             -BS--GGGEEE-TT-SSEEEEEEESSS-----EEEEEEETTT---TEEEEEEEGTS--EEEEEEEETTE-EEEEE----T
T ss_pred             eecccccceEEccC-CcEEEEEccCCC-----CeEEEEECCC---CceeeeecCCC--EEEEEecCCCc-eEEEe----c
Confidence               12334678887 5555554  443     3688888876   44444332211  1111 111111 11111    1


Q ss_pred             cccCceeecceeEEEEeeCCcce----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-----Ee-
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHE----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-----EL-  234 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~----~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-----~~-  234 (434)
                      |.+..       ...++..|...    ..+..+.+-.+..-+++..+..+.++ .+ .|.|+-.|+.+....     ++ 
T Consensus       156 DGsl~-------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy-~G~v~~~dlsg~~~~~~~~~~~~  226 (342)
T PF06433_consen  156 DGSLL-------TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SY-EGNVYSADLSGDSAKFGKPWSLL  226 (342)
T ss_dssp             TSCEE-------EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BT-TSEEEEEEETTSSEEEEEEEESS
T ss_pred             CCceE-------EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ec-CCEEEEEeccCCcccccCccccc
Confidence            21111       11222222211    11111112222345566555556543 22 567777777543321     11 


Q ss_pred             ---------CCcCeeEEEECCCCCeEEEE-e---cCC-CC--CeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEE
Q 013871          235 ---------GSGPYNTVRWNPKGKFLCLA-G---FGN-LP--GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       235 ---------~~~~~~~i~~SP~g~~l~~~-~---~~~-~~--g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~ta  297 (434)
                               -.+...-+++++..+.|.+. .   .++ .+  -.|.++|+.+++.+..+.. +.+..++.|.|.+=++.+
T Consensus       227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~  306 (342)
T PF06433_consen  227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA  306 (342)
T ss_dssp             -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred             CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence                     12334568888765544442 1   111 12  3578889999999998875 355578999998855544


Q ss_pred             -EcCCceeeCCcEEEEee-cCceeeee
Q 013871          298 -TTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       298 -s~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                       +..     ++.+.|||. +|+++...
T Consensus       307 ~~~~-----~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  307 LSAG-----DGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EETT-----TTEEEEEETTT--EEEEE
T ss_pred             EcCC-----CCeEEEEeCcCCcEEeeh
Confidence             332     678999998 67776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.79  E-value=0.00024  Score=71.17  Aligned_cols=284  Identities=12%  Similarity=0.142  Sum_probs=158.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCC---cEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDE---AVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~---~~la~~~~~~i~v~~~   77 (434)
                      +.++..+|.|+-+|++++.      .+.|-|+.. +...+-+.+.  +.-.+..++||+..   ..++.-+...-.+|++
T Consensus        27 ~~a~si~p~grdi~lAsr~------gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   27 FNAVSINPSGRDIVLASRQ------GLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             ccceeeccccchhhhhhhc------CeEEEeccCCCCCceeeecc--CcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence            3577889999988887743      366667654 3332222221  11223357888754   3455445556778886


Q ss_pred             CCCCC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           78 TDFPK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        78 ~~~~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...+.   ......|..+|+++.|.|.....++..     ..+..|..|++.+.  ..++....-......+++||-..-
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatc-----svdt~vh~wd~rSp--~~p~ys~~~w~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC-----SVDTYVHAWDMRSP--HRPFYSTSSWRSAASQVKWNYKDP  171 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCCCCcceeec-----cccccceeeeccCC--CcceeeeecccccCceeeecccCc
Confidence            43221   123344566899999999855555532     33456788998663  566666665666677899987655


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCC-CEEEEEEccCCCeEEEEeccc---c
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC---R  229 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg-~~~av~~g~~~~~v~l~d~~~---~  229 (434)
                      .+++..   .        |. .++.++...+......+. +-..|+.++|..-- .++.  +..+|++|.+||-..   +
T Consensus       172 ~vlass---h--------g~-~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~--s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  172 NVLASS---H--------GN-DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIM--SSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             chhhhc---c--------CC-ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhc--ccCCCCceeeecccccccc
Confidence            544321   1        11 123333322222222222 12344555554321 1222  578899999998742   2


Q ss_pred             eeEEe-CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEE---------EEccCC-EEEEEeeCCC--ceEEEECCCCC---
Q 013871          230 PILEL-GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAF---------WDYVDG-KQLGTTRAEC--SVTSEWSPDGR---  292 (434)
Q Consensus       230 ~~~~~-~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~i---------wd~~~~-~~i~~~~~~~--~~~~~wspdg~---  292 (434)
                      .-+.. ...++---+|-|-|+-.++- ..|.  ..+-+         |++.++ ..++.+.+|.  +..+.|--.++   
T Consensus       238 ~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~--n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~  315 (1081)
T KOG0309|consen  238 SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG--NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG  315 (1081)
T ss_pred             cceeccccCcceeccccccCceeEeccccCC--eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence            22222 34566667778877743332 1111  12333         333333 5788888883  23355544333   


Q ss_pred             -------EEEEEEcCCceeeCCcEEEEeecCceeeee
Q 013871          293 -------YFMTATTAPRLQIDNGIKIFHHNGSLFFKK  322 (434)
Q Consensus       293 -------~l~tas~~prl~~D~~i~iw~~~g~~~~~~  322 (434)
                             .|+|-+.      |..+|+|-+....+...
T Consensus       316 d~d~rdfQLVTWSk------D~~lrlWpI~~~i~~~~  346 (1081)
T KOG0309|consen  316 DYDSRDFQLVTWSK------DQTLRLWPIDSQIQRLC  346 (1081)
T ss_pred             CCCccceeEEEeec------CCceEeeeccHHHHHhh
Confidence                   5788888      99999999876644433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.75  E-value=0.00079  Score=68.65  Aligned_cols=111  Identities=12%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCc
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKG   83 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~   83 (434)
                      .+|+|..-+++..+ .+....+.|.|+- .+|++-+.....    -...+++|.|..-.|+.+ .-+.+.||.....+.-
T Consensus        21 ~SWHPsePlfAVA~-fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVAS-FSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccCCCCceeEEEE-ecCCCCceEEEEe-cCCCCCcccccc----eehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            46889998888765 2233457899984 788754322211    223478999999988888 4589999998774432


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           84 ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+..-|...|..+.||++++..+.      ...++.|.+|.+..
T Consensus        95 tv~~th~a~i~~l~wS~~G~~l~t------~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   95 TVVETHPAPIQGLDWSHDGTVLMT------LDNPGSVHLWRYDV  132 (1416)
T ss_pred             eeccCCCCCceeEEecCCCCeEEE------cCCCceeEEEEeee
Confidence            223334557889999999654443      46788999999874

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.72  E-value=0.0027  Score=64.31  Aligned_cols=258  Identities=10%  Similarity=0.056  Sum_probs=135.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC------C-----c-EEEEe-cCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD------E-----A-VACRM-ATN   70 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d------~-----~-~la~~-~~~   70 (434)
                      ++.|||.| .|+.++      ...|.|-|..+-+.+.++..++   ..+..+.|+|-      .     . ++|++ ..|
T Consensus        20 A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~---s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   20 AADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQ---SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             ccccCccc-eEEEec------CceEEEEehhhhhhhhccccCc---cceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            56788866 444443      4678888988888888877654   67778999762      1     2 33333 347


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC---CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG---SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .|.+||............+...+.++.|-|..+   ..++..     ..+..+.+|+..+   ++.+=..+.....-.++
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI-----h~ss~lvLwntdt---G~k~Wk~~ys~~iLs~f  161 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI-----HGSSTLVLWNTDT---GEKFWKYDYSHEILSCF  161 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe-----cCCcEEEEEEccC---CceeeccccCCcceeee
Confidence            999999765433223333445567777766532   223222     3346788898776   44332222222222234


Q ss_pred             EECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE-----EEEEEccCCCeE
Q 013871          148 NWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE-----FAVVYGFMPASA  221 (434)
Q Consensus       148 ~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~-----~av~~g~~~~~v  221 (434)
                      .+.| |..+++++.+.          |  -+...+..+..+      ..++.+.++.+.+-..     ...++|..    
T Consensus       162 ~~DPfd~rh~~~l~s~----------g--~vl~~~~l~~se------p~~pgk~~qI~sd~Sdl~~lere~at~ns----  219 (1062)
T KOG1912|consen  162 RVDPFDSRHFCVLGSK----------G--FVLSCKDLGLSE------PDVPGKEFQITSDHSDLAHLERETATGNS----  219 (1062)
T ss_pred             eeCCCCcceEEEEccC----------c--eEEEEeccCCCC------CCCCceeEEEecCccchhhhhhhhhcccc----
Confidence            4444 22333333211          0  011111112111      1233333333322111     11111100    


Q ss_pred             EEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE--EEEE
Q 013871          222 TIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY--FMTA  297 (434)
Q Consensus       222 ~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~--l~ta  297 (434)
                         -..+..-..|.. ..-.++|+|.-+.++...+..   .+.|+|++-..++....-+  ++-.+.|-||++.  |...
T Consensus       220 ---~ts~~~sa~fit-y~a~faf~p~~rn~lfi~~pr---ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfcl  292 (1062)
T KOG1912|consen  220 ---TTSTPASAYFIT-YCAQFAFSPHWRNILFITFPR---ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCL  292 (1062)
T ss_pred             ---ccCCCcchhHHH-HHHhhhcChhhhceEEEEecc---ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEE
Confidence               000011001100 123478999998887777554   8999999877777665443  5556899998764  4444


Q ss_pred             EcCCceeeCCcEEEEee
Q 013871          298 TTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       298 s~~prl~~D~~i~iw~~  314 (434)
                      ..      ||.+-||--
T Consensus       293 H~------nG~ltirvr  303 (1062)
T KOG1912|consen  293 HS------NGRLTIRVR  303 (1062)
T ss_pred             ec------CCeEEEEEe
Confidence            44      899999975

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.71  E-value=0.0016  Score=67.01  Aligned_cols=160  Identities=14%  Similarity=0.118  Sum_probs=91.6

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------  216 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~------  216 (434)
                      .......+|+|+.+++.... .|....   ....||..+..+.. ..+.-  ........|+|||+.++++...      
T Consensus       351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeeec--CCCCCCceECCCCCceEEEecCcceEEE
Confidence            34567789999999877543 222211   23457877754432 33322  2347889999999988765421      


Q ss_pred             ----CCCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEE---EEccCCE-EEE---Ee-eC-CC-c
Q 013871          217 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLG---TT-RA-EC-S  282 (434)
Q Consensus       217 ----~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i---wd~~~~~-~i~---~~-~~-~~-~  282 (434)
                          ..+.+.+.+++......-..+.+..+.|||||..|++..    .|.|++   -....++ .+.   .+ .. .. +
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                112333334443222211246799999999999888765    257887   4444553 121   11 11 12 4


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      ..+.|..++..+ +++..    .+..+..-.++|..
T Consensus       500 ~~l~W~~~~~L~-V~~~~----~~~~v~~v~vDG~~  530 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSD----PEHPVWYVNLDGSN  530 (591)
T ss_pred             ccceEecCCEEE-EEecC----CCCceEEEecCCcc
Confidence            669999999954 55541    13334444456653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.71  E-value=0.00044  Score=75.80  Aligned_cols=196  Identities=11%  Similarity=0.145  Sum_probs=121.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.++.=+|...|-+|.+     .|+.|++|....++.+..+.....  ..+..+.|+..|.-+..+ +||.|-+|.....
T Consensus      2211 v~r~~sHp~~~~Yltgs-----~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGS-----QDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred             eeeecCCCCCceEEecC-----CCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCc
Confidence            34455567677777776     899999999998988888766543  667788999999877766 6789999998731


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      . ....+.|..+..+|.|-..   .++  ..+.....+.+.+||.-.                                 
T Consensus      2284 ~-~~s~qchnk~~~Df~Fi~s---~~~--tag~s~d~~n~~lwDtl~--------------------------------- 2324 (2439)
T KOG1064|consen 2284 P-YTSWQCHNKALSDFRFIGS---LLA--TAGRSSDNRNVCLWDTLL--------------------------------- 2324 (2439)
T ss_pred             c-eeccccCCccccceeeeeh---hhh--ccccCCCCCcccchhccc---------------------------------
Confidence            1 1112233333344433221   011  111111222333333211                                 


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEeCCcCe
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPY  239 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~~~~~~  239 (434)
                                            .+. ...+..-+.+.+..+++-|.-..|+  +|+.+|.|.+||++..++ +.+..   
T Consensus      2325 ----------------------~~~-~s~v~~~H~~gaT~l~~~P~~qlli--sggr~G~v~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2325 ----------------------PPM-NSLVHTCHDGGATVLAYAPKHQLLI--SGGRKGEVCLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred             ----------------------Ccc-cceeeeecCCCceEEEEcCcceEEE--ecCCcCcEEEeehHHHHHHHHhhh---
Confidence                                  000 1111122367788899999766665  799999999999986543 33322   


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                          +. .-.+++.+.   ..|+|.||++.....+.++..
T Consensus      2377 ----~~-~~~~f~~~s---s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGS---SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ----hh-hhheeeccC---cccceEEEEccccchhhcCch
Confidence                33 345777766   778999999988777766654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.68  E-value=0.0074  Score=54.56  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=87.9

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecccc-----eeEEeCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEcc-C
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYV-D  270 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~-~  270 (434)
                      ..++.|++.|..+++  +...+.+.+-+.+..     +..+-|.-..-.+.|+-... ++.+||   .||.+..||++ .
T Consensus       124 ~lslD~~~~~~~i~v--s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p  198 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFV--SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP  198 (339)
T ss_pred             eeEEEeeccCceEEE--EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence            457899999988774  555677764433211     12223666677777776554 666666   56899999998 4


Q ss_pred             CEEEEE---eeCCCceEEEEC-CCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeeeec-ccceeeEEEcCCC
Q 013871          271 GKQLGT---TRAECSVTSEWS-PDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP  337 (434)
Q Consensus       271 ~~~i~~---~~~~~~~~~~ws-pdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~~~~-~~~~~~~w~p~~~  337 (434)
                      ++.+..   ....++.++.=| |++.+|+||+.      |..|++||..  |+.++.... ..+|.+.|.|.-.
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY------De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY------DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEecc------ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence            444443   122255554444 56889999999      9999999984  677776544 5799999999765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0017  Score=61.73  Aligned_cols=245  Identities=15%  Similarity=0.192  Sum_probs=142.2

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcC--CCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCce
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTE--TGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~   84 (434)
                      ..+|+.+++     .|+.++.|.-.  +|.. +..|..   |...+..++-|-|+.++++..  +..+++||+.++....
T Consensus        19 ka~fiiqAS-----lDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dmin   90 (558)
T KOG0882|consen   19 KAKFIIQAS-----LDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMIN   90 (558)
T ss_pred             hhheEEeee-----cchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhh
Confidence            456777777     89999999742  2221 222222   224555677788999999864  5699999998876543


Q ss_pred             eeeee-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEe
Q 013871           85 LYRLR-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS  162 (434)
Q Consensus        85 ~~~~~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~  162 (434)
                      ..++. +++.....-+|+.. ..||+-..    ..+.+.+++--... .+....+.+|...+..+..++-|..++..   
T Consensus        91 miKL~~lPg~a~wv~skGd~~s~IAVs~~----~sg~i~VvD~~~d~-~q~~~fkklH~sPV~~i~y~qa~Ds~vSi---  162 (558)
T KOG0882|consen   91 MIKLVDLPGFAEWVTSKGDKISLIAVSLF----KSGKIFVVDGFGDF-CQDGYFKKLHFSPVKKIRYNQAGDSAVSI---  162 (558)
T ss_pred             hcccccCCCceEEecCCCCeeeeEEeecc----cCCCcEEECCcCCc-CccceecccccCceEEEEeeccccceeec---
Confidence            33333 45555555555421 13333221    23456666643321 35566677778888889999888865432   


Q ss_pred             cccccCceeecceeEEEE------eeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE--
Q 013871          163 DVDKTNQSYYGESKLNYL------TTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--  233 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l------~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~--  233 (434)
                      +...-..-|.++..+...      +.... .-.....+ .....++.|+|+|..+..+  ..|.+|++|+.++..+.+  
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl--~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTL--NPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             cccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceEEccccCccccc--CcccEEEEEEeccchhhhhh
Confidence            111222223222111110      00000 00111111 4566799999999999964  367899999876433211  


Q ss_pred             ---------------------e-------------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          234 ---------------------L-------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       234 ---------------------~-------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                                           +             +...-..+.|...|++|+.+..=    -|++.++.++++++.+
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~----gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL----GIKVINLDTNTVVRIL  313 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce----eEEEEEeecCeEEEEe
Confidence                                 0             01122458899999999988743    3899999988766554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.67  E-value=0.047  Score=53.95  Aligned_cols=71  Identities=10%  Similarity=0.217  Sum_probs=51.8

Q ss_pred             EEecCCCcEEEEEecCCC-----CCCC-cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013871            5 LTCLRVGLIIQTFQKSST-----PQEK-NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~-----~~d~-~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~   78 (434)
                      ++.+|.|.-+|.......     .... .|.||+ ..|+.+.++.-..   ..+..+.|+.++.+++...+|.+++|+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys-~sG~ll~~i~w~~---~~iv~~~wt~~e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYS-SSGKLLSSIPWDS---GRIVGMGWTDDEELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEEC-CCCCEeEEEEECC---CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence            566788887877653211     1123 499998 5688888876654   44449999999999998999999999975


Q ss_pred             C
Q 013871           79 D   79 (434)
Q Consensus        79 ~   79 (434)
                      .
T Consensus       110 G  110 (410)
T PF04841_consen  110 G  110 (410)
T ss_pred             C
Confidence            3

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.0051  Score=62.43  Aligned_cols=301  Identities=12%  Similarity=0.122  Sum_probs=158.5

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--EEEEe-cCCeEEEEeCCCCC
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--VACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--~la~~-~~~~i~v~~~~~~~   81 (434)
                      ++|||.=+.++...     .-..+.|+|++-..++....-..   ...+.++|-||.+  .|.++ .+|.+.||-.....
T Consensus       236 faf~p~~rn~lfi~-----~prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  236 FAFSPHWRNILFIT-----FPRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             hhcChhhhceEEEE-----eccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            46788655444433     33679999998888888776654   5666789998875  44444 67888888754321


Q ss_pred             Cceee---eeecC---CeeEEEEeCCCCCeEEEEecCCCC------CCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           82 KGILY---RLRVP---GVAAFEVSKAPGSHVAVFVPESKG------SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        82 ~~~~~---~~~~~---~v~~~~~sp~~~~~ia~~~~~~~~------~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      .....   .+..+   .+..+..--.-.+.++..+|.+..      ..+.+.+|++.+..  -..-..+.+-.....+.|
T Consensus       308 ~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r--i~~~~~s~~iel~~pf~f  385 (1062)
T KOG1912|consen  308 TEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR--IHLDYRSSSIELVLPFDF  385 (1062)
T ss_pred             ccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC--cCcccccccccccccccc
Confidence            11111   11111   111111100001222222332111      22456677776421  000001101111112222


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE--EE-ECcCCCE-----EEEEEccCCCeE
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD--VQ-WSYSGSE-----FAVVYGFMPASA  221 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~--v~-wspdg~~-----~av~~g~~~~~v  221 (434)
                        .+..+++              +++.+..+..+|.+..-..+.+..++-.  +. --|.|+.     -.+.-|...|+|
T Consensus       386 --~~~~~~v--------------~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV  449 (1062)
T KOG1912|consen  386 --NLSTKLV--------------GKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV  449 (1062)
T ss_pred             --cCceeeh--------------hhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence              2222222              2233444444443322222221111111  11 1122221     122248888999


Q ss_pred             EEEecccceeE---EeCCcCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCE--EEEEeeCC---CceEEEE
Q 013871          222 TIFNKKCRPIL---ELGSGPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGK--QLGTTRAE---CSVTSEW  287 (434)
Q Consensus       222 ~l~d~~~~~~~---~~~~~~~~~i~~SP~g~~l~~~~~~------~~~g~i~iwd~~~~~--~i~~~~~~---~~~~~~w  287 (434)
                      -++|+..+.++   ..|.+.+.++.|--..+++-.+-..      .....+.+-|+.+|.  .+...+..   .+..+.-
T Consensus       450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv  529 (1062)
T KOG1912|consen  450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV  529 (1062)
T ss_pred             EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence            99999877654   4488999999998776665443211      123467888999883  33333333   4455899


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecCcee-eee--ecccceeeEEE-cCCC
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKK--MFDKLFQAEWK-PVSP  337 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~~g~~~-~~~--~~~~~~~~~w~-p~~~  337 (434)
                      |.-|+||+..-.      |.-+-|||+.+..+ ..+  ..+-+..+.|. |.-+
T Consensus       530 S~~~~yLai~Fr------~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~  577 (1062)
T KOG1912|consen  530 SSSGRYLAILFR------REPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHP  577 (1062)
T ss_pred             cccCceEEEEec------ccchHHHhhccchHHHHHhhcCCcEEEEeecccCCC
Confidence            999999999998      99999999966543 332  44568889999 5433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.52  E-value=0.0019  Score=60.54  Aligned_cols=81  Identities=11%  Similarity=0.143  Sum_probs=57.2

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      |-.-+..++||||+++|+++..|   ..|+|-....--.|..+ -+|  -+..++.-++ +.|++++.      |+++++
T Consensus       150 hvSml~dVavS~D~~~IitaDRD---EkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sG------D~tlr~  219 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRD---EKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSG------DKTLRL  219 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCC---ceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCC------CCcEEE
Confidence            55667899999999999999855   58988654433223222 223  5555666554 66899998      999999


Q ss_pred             Eee-cCceeeeeecc
Q 013871          312 FHH-NGSLFFKKMFD  325 (434)
Q Consensus       312 w~~-~g~~~~~~~~~  325 (434)
                      ||+ +|++++..+..
T Consensus       220 Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  220 WDITSGKLLDTCDLS  234 (390)
T ss_pred             EecccCCcccccchh
Confidence            999 67777655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.50  E-value=0.00029  Score=71.66  Aligned_cols=110  Identities=19%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             EEEECcCCCEEEEEEc--cCCCeEEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871          200 DVQWSYSGSEFAVVYG--FMPASATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       200 ~v~wspdg~~~av~~g--~~~~~v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      -..|+|....|+|.+=  ...|.|+||--.+++-.+.. .-.+.+++|+|..-.|+.+-   ..|.+.||...+.+.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeeee
Confidence            4689999999998642  24468999966666554442 33456799999766666554   458999999888766554


Q ss_pred             eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec--Cce
Q 013871          277 TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL  318 (434)
Q Consensus       277 ~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~  318 (434)
                      ...|  .+..+.|||||..++|+..      -+.+.+|.++  |+.
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI  136 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence            4444  5566999999999999988      8999999997  653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.48  E-value=0.00022  Score=72.88  Aligned_cols=268  Identities=12%  Similarity=0.124  Sum_probs=154.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC--C-eEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--N-EIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~-~i~v~~~~   78 (434)
                      .+|++||-+.++|+.+.     ..+.|+++++.+|....++..+   +..++.+.=|-||..+.+.+.  . -..+|++.
T Consensus      1104 fTc~afs~~~~hL~vG~-----~~Geik~~nv~sG~~e~s~ncH---~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGS-----HAGEIKIFNVSSGSMEESVNCH---QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred             eeeEEeecCCceEEeee-----ccceEEEEEccCcccccccccc---ccccccccccCCcceeeeeccccCchHHHhccc
Confidence            47999999999999988     7899999999999887776554   477778888999998887643  2 57889986


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-ee---ecccceeEEEECCCCC
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RS---FFRCSTVQLNWNRGST  154 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~---~~~~~~~~~~ws~~G~  154 (434)
                      .-. ..  +..+..-..+.||......+    -+  .......||++.+   ..++.+ ++   ..........|||+.+
T Consensus      1176 s~~-~~--~Hsf~ed~~vkFsn~~q~r~----~g--t~~d~a~~YDvqT---~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STG-GP--RHSFDEDKAVKFSNSLQFRA----LG--TEADDALLYDVQT---CSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ccc-Cc--cccccccceeehhhhHHHHH----hc--ccccceEEEeccc---CcHHHHhcCcchhhhhhccccccCCCcc
Confidence            621 11  22233334455554311111    01  1124567899887   333322 11   1112234677899887


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~  233 (434)
                      .|+  ..           |  -||.+...   +.+-.+++-.--..-.|+|.|.++++       ...|||+++ ..++.
T Consensus      1244 LIl--nd-----------G--vLWDvR~~---~aIh~FD~ft~~~~G~FHP~g~eVII-------NSEIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1244 LIL--ND-----------G--VLWDVRIP---EAIHRFDQFTDYGGGGFHPSGNEVII-------NSEIWDMRTFKLLHS 1298 (1516)
T ss_pred             eEe--eC-----------c--eeeeeccH---HHHhhhhhheecccccccCCCceEEe-------echhhhhHHHHHHhc
Confidence            542  11           1  24443221   11111111111112358999999887       346899974 44455


Q ss_pred             eCCcCeeEEEECCCCCeEEEEec--CC------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871          234 LGSGPYNTVRWNPKGKFLCLAGF--GN------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       234 ~~~~~~~~i~~SP~g~~l~~~~~--~~------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                      .+.-....+.|+..|..+...-.  +.            .-...+-+|..++..|.++... ++..++-+|...++.+-.
T Consensus      1299 VP~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1299 VPSLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             CccccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence            55555567889998886543320  00            0012334555566667777664 555677788878877765


Q ss_pred             cCCce---eeCCcEEEEee
Q 013871          299 TAPRL---QIDNGIKIFHH  314 (434)
Q Consensus       299 ~~prl---~~D~~i~iw~~  314 (434)
                      .-...   +++-..|++.+
T Consensus      1379 ~~~~~d~dq~sT~~r~yEI 1397 (1516)
T KOG1832|consen 1379 MEDQEDMDQFSTSARMYEI 1397 (1516)
T ss_pred             ccChhhhhhhhhhhhhhhh
Confidence            42111   12335566655

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.42  E-value=0.04  Score=50.17  Aligned_cols=196  Identities=13%  Similarity=0.152  Sum_probs=100.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+.|+|.|+.+.|++...    +.+.|...+. +|+.++++.....  ...-.+.+..++.|+++.. ++.|.++++...
T Consensus        24 ~SGLTy~pd~~tLfaV~d----~~~~i~els~-~G~vlr~i~l~g~--~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQD----EPGEIYELSL-DGKVLRRIPLDGF--GDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             EEEEEEETTTTEEEEEET----TTTEEEEEET-T--EEEEEE-SS---SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             ccccEEcCCCCeEEEEEC----CCCEEEEEcC-CCCEEEEEeCCCC--CCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            578999999888888771    3466766675 6888888766543  3445788998998888774 678999888442


Q ss_pred             CCc----eeeeee--c-----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--------eeeecc
Q 013871           81 PKG----ILYRLR--V-----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--------RRSFFR  141 (434)
Q Consensus        81 ~~~----~~~~~~--~-----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--------~~~~~~  141 (434)
                      ...    ...++.  .     .++..++|.|.++..+++    +...|.  .||.+........+.        ....+-
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~----kE~~P~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA----KERKPK--RLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE----EESSSE--EEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE----eCCCCh--hhEEEccccCccceeecccccccccccee
Confidence            211    111122  1     257889999985554443    223343  344443210011111        112233


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC--------CCeEEEEECcCCCEEEEE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~v~wspdg~~~av~  213 (434)
                      .+...+.++|....++++.    +.+.       .|..++..|.......|...        ..-..|+|.++|+.+++ 
T Consensus       171 ~d~S~l~~~p~t~~lliLS----~es~-------~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-  238 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILS----DESR-------LLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-  238 (248)
T ss_dssp             S---EEEEETTTTEEEEEE----TTTT-------EEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-
T ss_pred             ccccceEEcCCCCeEEEEE----CCCC-------eEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-
Confidence            4556778888877877762    2222       24444544443444444421        23467999999977664 


Q ss_pred             EccCCCeEEEE
Q 013871          214 YGFMPASATIF  224 (434)
Q Consensus       214 ~g~~~~~v~l~  224 (434)
                        ++|+..++|
T Consensus       239 --sEpNlfy~f  247 (248)
T PF06977_consen  239 --SEPNLFYRF  247 (248)
T ss_dssp             --ETTTEEEEE
T ss_pred             --cCCceEEEe
Confidence              347666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=97.40  E-value=0.0054  Score=54.77  Aligned_cols=115  Identities=7%  Similarity=-0.032  Sum_probs=78.9

Q ss_pred             ccCCCeEEEEecccceeEE-eC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-E-EEEEeeCC---CceEEE
Q 013871          215 GFMPASATIFNKKCRPILE-LG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K-QLGTTRAE---CSVTSE  286 (434)
Q Consensus       215 g~~~~~v~l~d~~~~~~~~-~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-~-~i~~~~~~---~~~~~~  286 (434)
                      ...|.+++++++....... .|  .-..+++.+|||++++++.|..+   .|.+|.+.+. + .+.+..++   ......
T Consensus       134 ~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~---~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  134 ASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSR---RVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             ccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCC---cceEEEeCCccceeeeeEecccCCCceeee
Confidence            3456677777765433222 22  23388999999999999988554   8999887643 3 33333333   334489


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeec--Cceeeee------ecccceeeEEEcCCCC
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKK------MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~--g~~~~~~------~~~~~~~~~w~p~~~~  338 (434)
                      ||.....||+++.      |+.+.|||+.  +.++..+      +...+..+.|.|.++.
T Consensus       211 ~s~~~~~FAv~~Q------dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  211 FSENDLQFAVVFQ------DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             eccCcceEEEEec------CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence            9999999999999      9999999984  4444332      3346888889886654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.0002  Score=73.11  Aligned_cols=202  Identities=14%  Similarity=0.225  Sum_probs=132.6

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      ....++++||-+ ..++++     +...|.|++|++.+   +......+.|...++.+.=+.+|..++...+...     
T Consensus      1101 ~~~fTc~afs~~-~~hL~v-----G~~~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~----- 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGG-TNHLAV-----GSHAGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS----- 1166 (1516)
T ss_pred             ccceeeEEeecC-CceEEe-----eeccceEEEEEccC---ccccccccccccccccccccCCcceeeeeccccC-----
Confidence            456788889887 555554     34567899999988   7888888889888888888899998765432211     


Q ss_pred             eeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe------CCcCeeEE
Q 013871          170 SYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL------GSGPYNTV  242 (434)
Q Consensus       170 ~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~------~~~~~~~i  242 (434)
                         .-..||.+...++.  +-.   -..-+.+.|+.. .++.++ |..-..+.+||+. +.++.++      ..-..|+.
T Consensus      1167 ---PlsaLW~~~s~~~~--~Hs---f~ed~~vkFsn~-~q~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1167 ---PLSALWDASSTGGP--RHS---FDEDKAVKFSNS-LQFRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             ---chHHHhccccccCc--ccc---ccccceeehhhh-HHHHHh-cccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence               01124444322211  111   224457888865 455554 4444589999996 4444432      12344889


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCcee----------eCCcEEE
Q 013871          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQ----------IDNGIKI  311 (434)
Q Consensus       243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl~----------~D~~i~i  311 (434)
                      .|||+..+++-      +|  .+||++..+.|+.|....... =.|+|.|..++.-+.-+.+|          .|.+-..
T Consensus      1237 ~FsP~D~LIln------dG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~Ldqc~Vt 1308 (1516)
T KOG1832|consen 1237 HFSPCDTLILN------DG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSLDQCAVT 1308 (1516)
T ss_pred             ccCCCcceEee------Cc--eeeeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccccceEEE
Confidence            99999998873      23  589999887787776543222 57999999999888644332          2666667


Q ss_pred             EeecCceeeeee
Q 013871          312 FHHNGSLFFKKM  323 (434)
Q Consensus       312 w~~~g~~~~~~~  323 (434)
                      |+-+|..+|...
T Consensus      1309 FNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1309 FNSTGDVMYAML 1320 (1516)
T ss_pred             eccCccchhhhh
Confidence            777887776543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.35  E-value=0.076  Score=50.05  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=73.1

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--------ceeEEe--CCcCeeEEEEC
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL--GSGPYNTVRWN  245 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--------~~~~~~--~~~~~~~i~~S  245 (434)
                      .||.++..+. ...+....-..-+.++||||++.|.++ -...+.+..|++..        .....+  +.+.--.++.-
T Consensus       144 ~lyr~~p~g~-~~~l~~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD  221 (307)
T COG3386         144 SLYRVDPDGG-VVRLLDDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD  221 (307)
T ss_pred             eEEEEcCCCC-EEEeecCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence            5888875443 222222112233689999999988874 55567888886641        111111  23444456667


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE-CCCCCEEEEEEc
Q 013871          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w-spdg~~l~tas~  299 (434)
                      -+|.+.+.+..+.  +.|.+|+.+ ++++..+.-+  .++.++| .|+.+.|...+.
T Consensus       222 adG~lw~~a~~~g--~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         222 ADGNLWVAAVWGG--GRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CCCCEEEecccCC--ceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            7788775444221  389999998 8888877665  5555666 567777766665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.076  Score=54.94  Aligned_cols=227  Identities=10%  Similarity=0.025  Sum_probs=116.6

Q ss_pred             eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-
Q 013871           55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-  132 (434)
Q Consensus        55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-  132 (434)
                      -.|++.+..+|.+. +|.|.+++-.- ......+.....+..+-+.-+....++....+..+.|..++||++.....+. 
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            36888888888774 57777776432 1101122222233333344432234443333334466789999987542222 


Q ss_pred             ceee--eeec-------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee--ecCCCCCeEEE
Q 013871          133 PLAR--RSFF-------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDV  201 (434)
Q Consensus       133 ~i~~--~~~~-------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~v  201 (434)
                      |.+.  ...+       ......+.-+.+-+.+++.-   .+...-       ++.=++.+....++  ....+++|+.+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~-------~~~GDi~RDrgsr~~~~~~~~~pITgL  177 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVI-------CYKGDILRDRGSRQDYSHRGKEPITGL  177 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEE-------EEcCcchhccccceeeeccCCCCceee
Confidence            3332  1111       11223344444433332221   111111       11112222222222  23347899999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecccce-e---EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          202 QWSYSGSEFAVVYGFMPASATIFNKKCRP-I---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~v~l~d~~~~~-~---~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      ++.-+++..+++..  ...|.+|.++++. .   .+-+..+.||..+++-...+++++.    .-++|||......-..+
T Consensus       178 ~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~----e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  178 ALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS----EFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             EEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC----ceEEEEcCCCcceeeee
Confidence            99999987332222  3489999887554 2   2336778899999886663444442    26999998866555555


Q ss_pred             eCCCceEEEECCCCCEEEEEE
Q 013871          278 RAECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~l~tas  298 (434)
                      .-..--.+-|..-|..|++..
T Consensus       252 ~~g~kk~~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  252 EVGEKKEMLVFSFGLLLCVTT  272 (933)
T ss_pred             cCCCeEEEEEEecCEEEEEEc
Confidence            522223355555566665544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.28  E-value=0.21  Score=48.78  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             ccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--CceEEEECCC
Q 013871          215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPD  290 (434)
Q Consensus       215 g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~~~~~~wspd  290 (434)
                      +..++.+..||.+ ++.+............  .++..+++++   .+|.|+.+|..+++.+..... .  ......  ..
T Consensus       247 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~  319 (377)
T TIGR03300       247 VSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPA--VV  319 (377)
T ss_pred             EEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCE--EE
Confidence            3446789999985 3444433222222222  2456666665   568999999999987765532 1  111111  24


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |.+|++++.      |+.+.++|. +|+++.+.
T Consensus       320 g~~l~~~~~------~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       320 GGYLVVGDF------EGYLHWLSREDGSFVARL  346 (377)
T ss_pred             CCEEEEEeC------CCEEEEEECCCCCEEEEE
Confidence            678888888      999999998 47766543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.28  E-value=0.17  Score=49.39  Aligned_cols=92  Identities=11%  Similarity=0.167  Sum_probs=56.2

Q ss_pred             CCCEEEEEEccCCCeEEEEecc-cceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013871          206 SGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                      ++..+++  +..++.+..+|.. ++.+...   ..........  .|..|++++   .+|.|+++|..+++.+..+..+.
T Consensus       278 ~~~~vyv--~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       278 DDNRLYV--TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTDG  350 (377)
T ss_pred             eCCEEEE--ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCC
Confidence            3455554  4467899999985 4444333   1111222222  466777776   56899999999999998887543


Q ss_pred             c--eE-EEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          282 S--VT-SEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       282 ~--~~-~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      .  .. .... + ..|+.++.      |+.|..|
T Consensus       351 ~~~~~sp~~~-~-~~l~v~~~------dG~l~~~  376 (377)
T TIGR03300       351 SGIASPPVVV-G-DGLLVQTR------DGDLYAF  376 (377)
T ss_pred             CccccCCEEE-C-CEEEEEeC------CceEEEe
Confidence            1  11 2222 2 35777777      8877765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.13  E-value=0.0084  Score=54.17  Aligned_cols=128  Identities=19%  Similarity=0.331  Sum_probs=85.3

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCC-eEEEEecccce-eEEeC----CcCeeEEEECCCCCeEEEE--ecCCCCCeEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRP-ILELG----SGPYNTVRWNPKGKFLCLA--GFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~~~~-~~~~~----~~~~~~i~~SP~g~~l~~~--~~~~~~g~i~iw  266 (434)
                      ....|+++++|....-++ ....|+ -..+||..+.. ...+.    ....-.=.|||||++|...  ++++..|.|=||
T Consensus        67 paR~Hgi~~~p~~~rava-fARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY  145 (366)
T COG3490          67 PARGHGIAFHPALPRAVA-FARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY  145 (366)
T ss_pred             ccccCCeecCCCCcceEE-EEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence            457789999997765444 356677 45778886432 22221    1111234699999998875  455678999999


Q ss_pred             EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc----CC---c--ee---eCCcEEEEe-ecCceeeeee
Q 013871          267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT----AP---R--LQ---IDNGIKIFH-HNGSLFFKKM  323 (434)
Q Consensus       267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~----~p---r--l~---~D~~i~iw~-~~g~~~~~~~  323 (434)
                      |...+ ..+..+..+  ..-.+.|.+||+.++.+..    -|   |  |+   |.-++.+-+ .+|.++.+..
T Consensus       146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~  218 (366)
T COG3490         146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHT  218 (366)
T ss_pred             ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhcc
Confidence            98755 677777776  4445999999999998753    11   1  22   334667777 6888776653

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.03  E-value=0.015  Score=53.03  Aligned_cols=234  Identities=11%  Similarity=0.137  Sum_probs=121.9

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC-Cce-------ee--------eee-cCCeeEEEEeCCCCC-eEEEEe
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP-KGI-------LY--------RLR-VPGVAAFEVSKAPGS-HVAVFV  110 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~-~~~-------~~--------~~~-~~~v~~~~~sp~~~~-~ia~~~  110 (434)
                      +.++++.|..-|.|++++. +|.|.+|.-.... ...       ..        .+. .+.|..+.|-.+.+. ...+  
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl--  104 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL--  104 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE--
Confidence            5667889999999999995 5799988854321 100       00        111 125667777665332 2222  


Q ss_pred             cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee
Q 013871          111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV  190 (434)
Q Consensus       111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v  190 (434)
                         .+.+.+|++|.+-... -+.+++-....    .+. +|.|-.+   +++..-...+.  .+.. .++   -...+++
T Consensus       105 ---stNdktiKlWKiyekn-lk~va~nnls~----~~~-~~~~g~~---~s~~~l~lprl--s~hd-~ii---aa~p~rv  166 (460)
T COG5170         105 ---STNDKTIKLWKIYEKN-LKVVAENNLSD----SFH-SPMGGPL---TSTKELLLPRL--SEHD-EII---AAKPCRV  166 (460)
T ss_pred             ---ecCCceeeeeeeeccc-chhhhcccccc----ccc-cccCCCc---CCHHHhhcccc--cccc-eEE---Eecccee
Confidence               1445689999986521 12222111110    111 1222111   00000000000  0000 000   0112222


Q ss_pred             e-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEe--C-----CcCeeEEEECCCCCeEEEEecCC
Q 013871          191 P-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--G-----SGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       191 ~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~--~-----~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      - -.+...|+++.+..|...|.   ...+=+|.+|++.    +--+.++  +     ..-+++..|+|.-..+..-+.  
T Consensus       167 yaNaH~yhiNSiS~NsD~et~l---SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--  241 (460)
T COG5170         167 YANAHPYHINSISFNSDKETLL---SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--  241 (460)
T ss_pred             ccccceeEeeeeeecCchheee---eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--
Confidence            1 11345678899987766666   3345689999875    1223333  1     234678889997764443322  


Q ss_pred             CCCeEEEEEccCCE------EE-E-EeeC----------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          259 LPGDMAFWDYVDGK------QL-G-TTRA----------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       259 ~~g~i~iwd~~~~~------~i-~-~~~~----------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ..|+|.+-|++...      .+ . ...+          ..++.+.||+.||||++-..       .+++|||+.
T Consensus       242 SkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-------ltvkiwDvn  309 (460)
T COG5170         242 SKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-------LTVKIWDVN  309 (460)
T ss_pred             CCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-------ceEEEEecc
Confidence            45899999987321      11 0 0010          14456999999999998764       799999984

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0051  Score=61.13  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=67.4

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~-~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      ..|.-+.|+|.-..+|.  +...+.+.++-+....+.++  +...+. +++|.|||++|++|=   .+|+|.+.|++++.
T Consensus        21 ~~i~~~ewnP~~dLiA~--~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIAT--RTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhhe--eccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence            46788999999888884  56678888887776666666  455555 999999999999886   56999999999987


Q ss_pred             EEEEeeC---CCceEEEEC
Q 013871          273 QLGTTRA---ECSVTSEWS  288 (434)
Q Consensus       273 ~i~~~~~---~~~~~~~ws  288 (434)
                      .+.....   ..++..-|+
T Consensus        96 ~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ceeccccccccchheeecc
Confidence            7766322   144456666

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.37  Score=44.20  Aligned_cols=148  Identities=12%  Similarity=0.125  Sum_probs=93.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|.|+|+.+.|.+..     ..+.-.||-..+|+.+++.+....  ..--.+.|..+++|+++-. +.++.++.+...
T Consensus        88 vS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~--~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          88 VSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGF--SDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEeccccc--CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            67899999999999888     667778887789999998876543  2223678999999988763 567877776543


Q ss_pred             CCc---eeeeee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-----CCCceeeeeeccccee
Q 013871           81 PKG---ILYRLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-----QSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~---~~~~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-----~~~~i~~~~~~~~~~~  145 (434)
                      ...   ...++.       -.+...++|+|.. ..+-++ .  ...|-.|..++-....     ...+-..+.++-.++.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~a-K--Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS  236 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVA-K--ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS  236 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEE-E--ccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence            211   011222       2357788999984 333222 1  2233344433321100     0223334456666778


Q ss_pred             EEEECCCCCeEEEEE
Q 013871          146 QLNWNRGSTGLLAVA  160 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~  160 (434)
                      .+.+++....|+++.
T Consensus       237 gl~~~~~~~~LLVLS  251 (316)
T COG3204         237 GLEFNAITNSLLVLS  251 (316)
T ss_pred             cceecCCCCcEEEEe
Confidence            888998888888774

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.82  E-value=0.016  Score=58.60  Aligned_cols=270  Identities=14%  Similarity=0.139  Sum_probs=142.6

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEEEEcCC
Q 013871           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+..+..+|.|+-+|.++.-.+.+-|+.+.-.....-.|  .-.|.+..|||.... +-++-   ..  +..-.+|++..
T Consensus        26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs---ts--~qkaiiwnlA~  100 (1081)
T KOG0309|consen   26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS---TS--NQKAIIWNLAK  100 (1081)
T ss_pred             cccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe---cC--cchhhhhhhhc
Confidence            344677888888888777666777777664332222222  335788889987532 22221   11  12235677654


Q ss_pred             CCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcC
Q 013871          128 DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYS  206 (434)
Q Consensus       128 ~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspd  206 (434)
                      .+.......+..|...++.+.|++...-++..++.  |..         ++.+++..-+.... .-........|.|+-.
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsv--dt~---------vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk  169 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSV--DTY---------VHAWDMRSPHRPFYSTSSWRSAASQVKWNYK  169 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCCcceeeccc--ccc---------ceeeeccCCCcceeeeecccccCceeeeccc
Confidence            33244445566677788899999988776554433  222         22332222211111 1111334457888864


Q ss_pred             -CCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEE--EEe-
Q 013871          207 -GSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQL--GTT-  277 (434)
Q Consensus       207 -g~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i--~~~-  277 (434)
                       +..+|   ......+.+||++  +.++..+  +...+|.+.|+..-. .+...+   ++|+|.+||.++...-  .+. 
T Consensus       170 ~p~vla---sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~---~d~tvkfw~y~kSt~e~~~~vt  243 (1081)
T KOG0309|consen  170 DPNVLA---SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS---NDGTVKFWDYSKSTTESKRTVT  243 (1081)
T ss_pred             Ccchhh---hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC---CCCceeeecccccccccceecc
Confidence             44444   3445589999996  3445544  566677777765432 333344   6789999998754211  111 


Q ss_pred             eCCCceEEEECCCCCE--EEEEE---cCCceeeCCcEEEEeecCc--ee--eeeecccceeeEEEcCCCCCCCC
Q 013871          278 RAECSVTSEWSPDGRY--FMTAT---TAPRLQIDNGIKIFHHNGS--LF--FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~--l~tas---~~prl~~D~~i~iw~~~g~--~~--~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ....+..-.+-|=|+-  ++-..   ..|-++.+|.-..|++-..  .+  +..+.+.+.+..||.+....+-.
T Consensus       244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~  317 (1081)
T KOG0309|consen  244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY  317 (1081)
T ss_pred             ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence            1112223344443332  22211   1233333555555554221  22  23356677777788777654443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.75  E-value=0.021  Score=58.44  Aligned_cols=122  Identities=13%  Similarity=0.156  Sum_probs=79.8

Q ss_pred             CcCCCEEEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCC-----CCeEEEEecCCCCCeEEEEEcc---CCEE
Q 013871          204 SYSGSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGKQ  273 (434)
Q Consensus       204 spdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~-----g~~l~~~~~~~~~g~i~iwd~~---~~~~  273 (434)
                      .-+|.+++  ++++||++.|..+- .....++ -..++++|+++||     .+.+++||   ..| +.++..+   +...
T Consensus        80 ~~~Gey~a--sCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~  153 (846)
T KOG2066|consen   80 ILEGEYVA--SCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDS  153 (846)
T ss_pred             ccCCceEE--EecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccc
Confidence            44789999  68899999988663 3333333 2678999999998     56777787   667 7777644   2333


Q ss_pred             EEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeec------cc--ceeeEEEcCCCCCC
Q 013871          274 LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMF------DK--LFQAEWKPVSPDKF  340 (434)
Q Consensus       274 i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~------~~--~~~~~w~p~~~~~~  340 (434)
                      +..... ..+..+.|.  |.+||.+.       |-+|+|+|...+ .+-..++      ++  .+.+.|++....++
T Consensus       154 v~l~~~eG~I~~i~W~--g~lIAWan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI  221 (846)
T KOG2066|consen  154 VVLSEGEGPIHSIKWR--GNLIAWAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI  221 (846)
T ss_pred             eeeecCccceEEEEec--CcEEEEec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence            322222 255568885  66888887       789999998543 3333222      12  45788888765443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.74  E-value=0.2  Score=45.99  Aligned_cols=156  Identities=17%  Similarity=0.264  Sum_probs=90.6

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      ......++++|+.++++...  +       +...|+.....+...  ..+ ....+....|+++|...++..+  +....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~--~-------~~~~L~~~~~~~~~~--~~~-~g~~l~~PS~d~~g~~W~v~~~--~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEG--D-------GGRSLYVGPAGGPVR--PVL-TGGSLTRPSWDPDGWVWTVDDG--SGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEc--C-------CCCEEEEEcCCCcce--eec-cCCccccccccCCCCEEEEEcC--CCceE
Confidence            45678899999988876511  1       223466655433321  111 2347788999999877775433  33333


Q ss_pred             EE-e-ccc--cee-EEeC-C-cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CC--EEE----EEe--eCCCceE
Q 013871          223 IF-N-KKC--RPI-LELG-S-GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT  284 (434)
Q Consensus       223 l~-d-~~~--~~~-~~~~-~-~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~--~~i----~~~--~~~~~~~  284 (434)
                      ++ + ...  ..+ .... . +.|..+.+||||..+++...+...+.|++--+.   ++  ..+    ...  ....++.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~  170 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD  170 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence            33 2 222  111 1121 2 289999999999988887654445788886543   22  111    111  1235667


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEE-EeecCc
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGS  317 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~i-w~~~g~  317 (434)
                      ++|.+++..++.+...     +..+.. ....|.
T Consensus       171 v~W~~~~~L~V~~~~~-----~~~~~~~v~~dG~  199 (253)
T PF10647_consen  171 VAWSDDSTLVVLGRSA-----GGPVVRLVSVDGG  199 (253)
T ss_pred             eeecCCCEEEEEeCCC-----CCceeEEEEccCC
Confidence            9999999987777653     443433 445554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.70  E-value=0.72  Score=45.61  Aligned_cols=36  Identities=19%  Similarity=0.367  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871          119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .|+||+..    +..+.+..+-....+.|.|+.+...+++
T Consensus        62 ~I~iys~s----G~ll~~i~w~~~~iv~~~wt~~e~LvvV   97 (410)
T PF04841_consen   62 SIQIYSSS----GKLLSSIPWDSGRIVGMGWTDDEELVVV   97 (410)
T ss_pred             EEEEECCC----CCEeEEEEECCCCEEEEEECCCCeEEEE
Confidence            58888875    5677777777788899999987555444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.70  E-value=0.068  Score=53.25  Aligned_cols=149  Identities=15%  Similarity=0.215  Sum_probs=86.0

Q ss_pred             CeeeecCCCcEEEEe---cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC----CeEEEEecCCCCCCceEEEEEc
Q 013871           53 PSIRFSSDEAVACRM---ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG----SHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        53 ~~~~~S~d~~~la~~---~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~----~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ..++|+...+.+.+.   .++++++=|.       ..-..++.|..+.|+|-..    .++|+      .....|.+|.+
T Consensus        23 hGlaWTDGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWqL   89 (671)
T PF15390_consen   23 HGLAWTDGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQL   89 (671)
T ss_pred             cceEecCCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEE------eccceEEEEEe
Confidence            368898444444443   3455554221       1234567799999999632    24454      22347889998


Q ss_pred             CCCC--CCCceeeeee-----cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871          126 GKDL--QSQPLARRSF-----FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV  198 (434)
Q Consensus       126 ~~~~--~~~~i~~~~~-----~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i  198 (434)
                      --..  .++.+...+-     +..-.-...|+|...-|++++..|+.          -++.+..++. ...+.+...|.|
T Consensus        90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS----------V~~sV~~d~s-rVkaDi~~~G~I  158 (671)
T PF15390_consen   90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS----------VLPSVHCDSS-RVKADIKTSGLI  158 (671)
T ss_pred             ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee----------EeeeeeeCCc-eEEEeccCCceE
Confidence            5210  0122211111     11111134699999888888765431          1333433333 344455668999


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      |+.+|.+||.+++|..|+. =..++||-
T Consensus       159 hCACWT~DG~RLVVAvGSs-LHSyiWd~  185 (671)
T PF15390_consen  159 HCACWTKDGQRLVVAVGSS-LHSYIWDS  185 (671)
T ss_pred             EEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence            9999999999999987762 25567775

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.74  Score=45.06  Aligned_cols=283  Identities=13%  Similarity=0.146  Sum_probs=161.9

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeeecC--CeeEEEEeCCC
Q 013871           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLRVP--GVAAFEVSKAP  102 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~--~v~~~~~sp~~  102 (434)
                      ++.+++..+......+...    ..+..+...+++..+....  .+.+.+.+.. ... ........  .-..+.+++.+
T Consensus        12 ~~~v~~~~~~~~~~~~~~~----~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~-~~~~~~~g~~~p~~i~v~~~~   85 (381)
T COG3391          12 DVSVINTGTNKVTAAISLG----RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT-VTQSLSVGGVYPAGVAVNPAG   85 (381)
T ss_pred             ceEEEeecccEEEEEeecC----CCCceeEEcCccCEEEEEeecCceeeecccc-cce-eeeeccCCCccccceeeCCCC
Confidence            3777777666655555443    2444678888885554442  3344444433 211 11111111  12345556553


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      ...... .    .....|.+.+...   ...+....... .-..+.++++|+.+.+.-...         +...+..++.
T Consensus        86 ~~vyv~-~----~~~~~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~---------~~~~vsvid~  147 (381)
T COG3391          86 NKVYVT-T----GDSNTVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN---------GNNTVSVIDA  147 (381)
T ss_pred             CeEEEe-c----CCCCeEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEeccc---------CCceEEEEeC
Confidence            322221 1    1245677777554   33333333222 556889999999887642211         2223455554


Q ss_pred             CCcceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE------eCC-cCeeEEEECCCCCeEEEE
Q 013871          183 DGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGS-GPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       183 ~~~~~~~-v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~------~~~-~~~~~i~~SP~g~~l~~~  254 (434)
                      ....... ++.. ..| ..++++|+|..+.+.. ..++.+.++|.....+..      ... ..-..+.++|+|.++.+.
T Consensus       148 ~t~~~~~~~~vG-~~P-~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         148 ATNKVTATIPVG-NTP-TGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             CCCeEEEEEecC-CCc-ceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            4332221 2222 245 8999999999888754 557799999988766653      211 122568999999988887


Q ss_pred             ecCCCCCeEEEEEccCCEEEEE-ee-CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec----c
Q 013871          255 GFGNLPGDMAFWDYVDGKQLGT-TR-AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF----D  325 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~-~~-~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~----~  325 (434)
                      ...+.++.+...|..++..... .. .. ....+..+|+|.++.++...     .+.+.+-|.....+...  ..    .
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V~vid~~~~~v~~~~~~~~~~~~  299 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTVSVIDGATDRVVKTGPTGNEALG  299 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeEEEEeCCCCceeeeecccccccc
Confidence            6555557899999998876665 22 22 34568999999999998763     47777777654333221  11    1


Q ss_pred             cceeeEEEcCCCCCCC
Q 013871          326 KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~  341 (434)
                      ..+.+.+.+.......
T Consensus       300 ~~~~~~~~~~~~~~~~  315 (381)
T COG3391         300 EPVSIAISPLYDTNYV  315 (381)
T ss_pred             cceeccceeecccccc
Confidence            2555666665444333

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.65  E-value=0.55  Score=43.48  Aligned_cols=231  Identities=12%  Similarity=0.144  Sum_probs=121.8

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee---
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY---   86 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~---   86 (434)
                      .|+.|+.+.     +++ |.++++............    ..+..+..-++-+.|+...|+.|.+|++.........   
T Consensus         6 ~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~   75 (275)
T PF00780_consen    6 WGDRLLVGT-----EDG-LYVYDLSDPSKPTRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPL   75 (275)
T ss_pred             CCCEEEEEE-----CCC-EEEEEecCCccceeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccc
Confidence            467777766     666 999998433333333222    2355777788888888888999999998775432211   


Q ss_pred             ----------ee-ecCCeeEEE--EeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-CceeeeeecccceeEEEECC
Q 013871           87 ----------RL-RVPGVAAFE--VSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        87 ----------~~-~~~~v~~~~--~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-~~i~~~~~~~~~~~~~~ws~  151 (434)
                                .+ ...++..++  -...+...+++....      .+.+|...... .. ........ ......+.|. 
T Consensus        76 ~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk------~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~-  147 (275)
T PF00780_consen   76 AFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK------KILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL-  147 (275)
T ss_pred             cccccccccccccccCCeeEEeeccccccceEEEEEECC------EEEEEEEECCcccccceeEEEEc-CCCcEEEEEe-
Confidence                      11 123455555  112223344443322      77777775421 01 22222222 2455677787 


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCC-----------CCCeEEEEECcCCCEEEEEEccCCC
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK-----------EGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~-----------~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                       ++.+++....             ..+.++........+ ....           ..++.-+..+ + ++|.+++   +.
T Consensus       148 -~~~i~v~~~~-------------~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~e~Ll~~---~~  208 (275)
T PF00780_consen  148 -GNKICVGTSK-------------GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D-NEFLLCY---DN  208 (275)
T ss_pred             -CCEEEEEeCC-------------ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C-ceEEEEe---cc
Confidence             5666664321             123334332211111 1111           1244444444 3 3566544   23


Q ss_pred             eEEEEecccceeE----EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE
Q 013871          220 SATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT  284 (434)
Q Consensus       220 ~v~l~d~~~~~~~----~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~  284 (434)
                      ...+.|..+....    .+...+..-....|   ||+..+.    ..|+||++.+++++..+..+....
T Consensus       209 ~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~~----~~iEV~~~~~~~lvQ~i~~~~~~~  270 (275)
T PF00780_consen  209 IGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFSS----NSIEVRSLETGELVQTIPLPNIRL  270 (275)
T ss_pred             eEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEECC----CEEEEEECcCCcEEEEEECCCEEE
Confidence            4445566654433    33444433333333   6665432    369999999999999888765443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.64  E-value=0.52  Score=42.97  Aligned_cols=175  Identities=15%  Similarity=0.179  Sum_probs=94.8

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      +...+.|+|+...|.++    .|...       .|+.++..|.-...+++...+....|++.-++ .|++ ....++.+.
T Consensus        23 e~SGLTy~pd~~tLfaV----~d~~~-------~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl-~~Er~~~L~   89 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAV----QDEPG-------EIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVL-SEERDQRLY   89 (248)
T ss_dssp             -EEEEEEETTTTEEEEE----ETTTT-------EEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEE-EETTTTEEE
T ss_pred             CccccEEcCCCCeEEEE----ECCCC-------EEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEE-EEcCCCcEE
Confidence            45689999998887665    23332       36777777776777788777788899998655 5555 455678898


Q ss_pred             EEecc--c-----cee--EEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCCEE-EEEe--------
Q 013871          223 IFNKK--C-----RPI--LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGTT--------  277 (434)
Q Consensus       223 l~d~~--~-----~~~--~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~~~-i~~~--------  277 (434)
                      ++++.  +     ...  .++     +...+..++|+|.++.|+++--. ....|+-++.  ..... +...        
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~-~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER-KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES-SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC-CChhhEEEccccCccceeeccccccccccc
Confidence            88762  1     111  122     23446789999998877766422 2223444443  11111 1111        


Q ss_pred             eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCC
Q 013871          278 RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVS  336 (434)
Q Consensus       278 ~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~  336 (434)
                      .....+.++++|...+|+.-+.-     ...+.+.|.+|+.+......           .--.+++.|++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~e-----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDE-----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETT-----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             eeccccceEEcCCCCeEEEEECC-----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            11255668999987666666653     67788899888876554332           34456666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.55  E-value=0.62  Score=42.77  Aligned_cols=146  Identities=16%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe-CCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD-TTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~-~~~   79 (434)
                      +.+.+.||||+.++....  ......|.++..  +.........    .....+.|++++...+... +...+++. ...
T Consensus        26 ~~s~AvS~dg~~~A~v~~--~~~~~~L~~~~~--~~~~~~~~~g----~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSE--GDGGRSLYVGPA--GGPVRPVLTG----GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             ccceEECCCCCeEEEEEE--cCCCCEEEEEcC--CCcceeeccC----CccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            457899999998887661  112345666654  3322332211    3455789999988777664 34555553 222


Q ss_pred             CCCceeeeeecC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC------CceeeeeecccceeEEEE
Q 013871           80 FPKGILYRLRVP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS------QPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        80 ~~~~~~~~~~~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~------~~i~~~~~~~~~~~~~~w  149 (434)
                      .. .....+...    .|.++.+||+ +..+++.+....+  +.|.+-.+.....+      .++............+.|
T Consensus        98 g~-~~~~~v~~~~~~~~I~~l~vSpD-G~RvA~v~~~~~~--~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W  173 (253)
T PF10647_consen   98 GT-GEPVEVDWPGLRGRITALRVSPD-GTRVAVVVEDGGG--GRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAW  173 (253)
T ss_pred             Cc-ceeEEecccccCCceEEEEECCC-CcEEEEEEecCCC--CeEEEEEEEeCCCCCcceeccceEecccccCcceeeee
Confidence            21 122222222    6999999999 6777776644322  56666555432112      111112122346678999


Q ss_pred             CCCCCeEEEEE
Q 013871          150 NRGSTGLLAVA  160 (434)
Q Consensus       150 s~~G~~l~~~~  160 (434)
                      .++++ |++++
T Consensus       174 ~~~~~-L~V~~  183 (253)
T PF10647_consen  174 SDDST-LVVLG  183 (253)
T ss_pred             cCCCE-EEEEe
Confidence            99987 44443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=96.52  E-value=1.4  Score=46.64  Aligned_cols=243  Identities=9%  Similarity=-0.019  Sum_probs=112.2

Q ss_pred             CeeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEecCCC-CCCceEEEEE
Q 013871           53 PSIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFVPESK-GSPASVQIYA  124 (434)
Q Consensus        53 ~~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~~~~~-~~~~~v~i~~  124 (434)
                      ..+.||||+++|+.+.+  |    +|++.|+.+...   ....+.++ ..++|++++. .+.+...... ..+..|..++
T Consensus       130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~---l~~~i~~~~~~~~w~~D~~-~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW---YPELLDNVEPSFVWANDSW-TFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC---CCccccCcceEEEEeeCCC-EEEEEEecCCCCCCCEEEEEE
Confidence            35689999999999843  1    688888865331   11112222 3589999844 3433322222 3556788888


Q ss_pred             cCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEe--eC-CcceeeeecCCCCCeEE
Q 013871          125 CGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT--TD-GTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~--~~-~~~~~~v~l~~~~~i~~  200 (434)
                      +.+.. .+............ +...-+.+++++++......+       +  .++++.  .. +.....++.. .+....
T Consensus       206 lgt~~-~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~-------~--~~~l~~~~~~~~~~~~~~~~~-~~~~~~  274 (686)
T PRK10115        206 IGTPA-SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT-------S--EVLLLDAELADAEPFVFLPRR-KDHEYS  274 (686)
T ss_pred             CCCCh-hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc-------c--cEEEEECcCCCCCceEEEECC-CCCEEE
Confidence            86521 01111111111111 222334588888644322211       1  233333  21 2111222222 222233


Q ss_pred             EEECcCCCEEEEEEccCCC--eEEEEeccc-ceeEEe--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          201 VQWSYSGSEFAVVYGFMPA--SATIFNKKC-RPILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~--~v~l~d~~~-~~~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      +.  ..+..|.+.+.....  .+...++.. .....+  +  ...+..+.++  +++|++....+....+.++|..+++.
T Consensus       275 ~~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~  350 (686)
T PRK10115        275 LD--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREV  350 (686)
T ss_pred             EE--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCce
Confidence            32  234566665543222  444445442 111111  2  2356667776  55666665544344567777654433


Q ss_pred             EEEe-eCC-CceEEEEC--CCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          274 LGTT-RAE-CSVTSEWS--PDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       274 i~~~-~~~-~~~~~~ws--pdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .... ..+ ....+.++  +++..++...+++..  -..+..+|..+
T Consensus       351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~~  395 (686)
T PRK10115        351 IGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTT--PDTLFELDMDT  395 (686)
T ss_pred             EEecCCCCceEeeecccCCCCCceEEEEEecCCC--CCEEEEEECCC
Confidence            2221 222 22224455  555444433332222  45666677654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.014  Score=58.13  Aligned_cols=89  Identities=18%  Similarity=0.375  Sum_probs=68.9

Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+.-+.|+|.=.+||++.   ..|.|-+.-++ ...+.++.-  .+++ .++|.|||+.|++|-.      ||+|+|-|+
T Consensus        22 ~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~Dv   91 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHDV   91 (665)
T ss_pred             ceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEEc
Confidence            455689999999999987   66789888777 667777663  3666 7999999999999999      999999999


Q ss_pred             c-Cceeeeee---cccceeeEEEcCC
Q 013871          315 N-GSLFFKKM---FDKLFQAEWKPVS  336 (434)
Q Consensus       315 ~-g~~~~~~~---~~~~~~~~w~p~~  336 (434)
                      . |..+....   ...+....|.|..
T Consensus        92 e~~~~l~~~~~s~e~~is~~~w~~~~  117 (665)
T KOG4640|consen   92 EKGGRLVSFLFSVETDISKGIWDRIE  117 (665)
T ss_pred             cCCCceeccccccccchheeecccce
Confidence            4 44555432   2467788887654

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=96.50  E-value=0.098  Score=46.78  Aligned_cols=70  Identities=13%  Similarity=0.214  Sum_probs=55.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeE--EeCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccC
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PIL--ELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~--~~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .|+.++-+|.-..+.+ .|..++.+.+||.+..  ++.  ..|+.+++.+-|+| ++..|++++   .+|.+.-||..+
T Consensus       181 ~v~~l~~hp~qq~~v~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVC-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEE-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence            4888999997777766 5888999999999743  222  23899999999999 557888888   778999999874

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.025  Score=54.12  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=81.7

Q ss_pred             EccCCCeEEEEecccc---e--eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC------CEEEEEee----
Q 013871          214 YGFMPASATIFNKKCR---P--ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD------GKQLGTTR----  278 (434)
Q Consensus       214 ~g~~~~~v~l~d~~~~---~--~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~------~~~i~~~~----  278 (434)
                      +....+.+.++|..+.   .  ...+|..++..+.++|-|..+++..   ..|.|+-|..+.      .+....+.    
T Consensus       117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd  193 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHETD  193 (558)
T ss_pred             ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCccccccccccccch
Confidence            5667789999997532   2  2345899999999999999888776   568999998772      11111111    


Q ss_pred             ------C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871          279 ------A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       279 ------~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                            + ...+++++||+|..+.+-..      |..|+++.+.+..+.+.--+.+......|..++-+.
T Consensus       194 Ly~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~  257 (558)
T KOG0882|consen  194 LYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM  257 (558)
T ss_pred             hhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence                  1 14566999999999999888      999999998655443333333445556666544443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.0081  Score=56.57  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          235 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      +...|..++|||+.+ ++.+++.|+   +|.|.|+++...+..+.++ .++.|+|.-|.++++-|+..     .|.|.||
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~n---kiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~-----nG~Vlvy  263 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGN---KIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQ-----NGMVLVY  263 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCc---eEEEEecccceeeeheeccCCceeeeeccCCcceeEEecc-----CceEEEE
Confidence            566788999999998 777788666   9999999999888888777 66779999999998888875     7889999


Q ss_pred             eecC
Q 013871          313 HHNG  316 (434)
Q Consensus       313 ~~~g  316 (434)
                      |+..
T Consensus       264 D~R~  267 (463)
T KOG1645|consen  264 DMRQ  267 (463)
T ss_pred             EccC
Confidence            9843

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.45  E-value=0.022  Score=55.75  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEeCC--cCeeEEEECCCCCeEEEEecCCCCCeEEE-EEccC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILELGS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAF-WDYVD  270 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~~~--~~~~~i~~SP~g~~l~~~~~~~~~g~i~i-wd~~~  270 (434)
                      ++.+.+++..|.|+.+++  +-..+.+.+.|.+... +.++..  .....++ .|..+.|+...   ++..+.+ |..-+
T Consensus       876 na~~R~iaVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa---ldHslaVnWhald  949 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA---LDHSLAVNWHALD  949 (1034)
T ss_pred             chheeEEEeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc---ccceeEeeehhcC
Confidence            467889999999999994  7778899999997654 333311  1111111 35566676666   4558888 88777


Q ss_pred             CEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          271 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       271 ~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      +......+-+ ....+ .-.-|..|+++..      .+-+.+|.-.+.+
T Consensus       950 gimh~q~kpppepahf-lqsvgpSLV~a~~------Gn~lgVYad~a~~  991 (1034)
T KOG4190|consen  950 GIMHLQDKPPPEPAHF-LQSVGPSLVTAQN------GNILGVYADSAEL  991 (1034)
T ss_pred             CeeeeccCCCCcchhh-hhccCceeEEecc------CcEEEEEecchhh
Confidence            7554444322 11111 1224677888888      7778888765554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.15  Score=50.02  Aligned_cols=137  Identities=15%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      ..++.++++....+. ......+.++|.....+...   +. .-..++++|+|+.+.++..++.++.+.+.|..+.+.+.
T Consensus        77 ~~i~v~~~~~~vyv~-~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          77 AGVAVNPAGNKVYVT-TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             cceeeCCCCCeEEEe-cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            467888888877764 44467999999765443332   22 33579999999998888764335799999999988777


Q ss_pred             EeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeee------e-ecccceeeEEEcCCCCCCCC
Q 013871          276 TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK------K-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       276 ~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~------~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ..... ....++++|+|..++++...     ++.|.+.+.++..+..      . ....-+.+.++|++..++-.
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~-----~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~  224 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSD-----DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA  224 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecC-----CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence            65433 45679999999988888753     8999999987776553      1 22345788888888866654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=1.3  Score=46.30  Aligned_cols=220  Identities=13%  Similarity=0.116  Sum_probs=118.0

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEec-C---C--eEEEEeCC
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRMA-T---N--EIQFFDTT   78 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~---~--~i~v~~~~   78 (434)
                      .||+.+..+|.++     .++.|.+.+ ..-+.++.|.....  ..+ ..-|.-++ .+|++.+ |   |  .|+||+++
T Consensus        30 c~~s~~~~vvigt-----~~G~V~~Ln-~s~~~~~~fqa~~~--siv-~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le  100 (933)
T KOG2114|consen   30 CCSSSTGSVVIGT-----ADGRVVILN-SSFQLIRGFQAYEQ--SIV-QFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE  100 (933)
T ss_pred             EEcCCCceEEEee-----ccccEEEec-ccceeeehheecch--hhh-hHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence            4777777787777     677777766 33444577766542  324 34455555 5666552 2   2  68999986


Q ss_pred             CCCCc---eee---eee---cC----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccce
Q 013871           79 DFPKG---ILY---RLR---VP----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCST  144 (434)
Q Consensus        79 ~~~~~---~~~---~~~---~~----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~  144 (434)
                      .....   ...   ++.   .+    .+..+++|-+ -..|++-     -..|.|..+.=.-.. .+....-....+..+
T Consensus       101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~G-----f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pI  174 (933)
T KOG2114|consen  101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCG-----FTNGLVICYKGDILRDRGSRQDYSHRGKEPI  174 (933)
T ss_pred             ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEE-----ecCcEEEEEcCcchhccccceeeeccCCCCc
Confidence            53211   111   111   11    2444555554 3333331     122344443311000 011111111234567


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                      +.+.+..+|+.+++++++..          ..+|.+.  +.......+++ ..++++..+++...+|+++ +  +.-+.+
T Consensus       175 TgL~~~~d~~s~lFv~Tt~~----------V~~y~l~--gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~f  239 (933)
T KOG2114|consen  175 TGLALRSDGKSVLFVATTEQ----------VMLYSLS--GRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYF  239 (933)
T ss_pred             eeeEEecCCceeEEEEecce----------eEEEEec--CCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEE
Confidence            78888899998766554421          1234443  33222333443 5678888888776667753 3  347999


Q ss_pred             Eeccc-ceeEEeCCcCeeEEEECCCCCeEEEEe
Q 013871          224 FNKKC-RPILELGSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       224 ~d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~  255 (434)
                      ||..+ ++.+.|..+...-+.|...|.+|++..
T Consensus       240 Y~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~  272 (933)
T KOG2114|consen  240 YDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT  272 (933)
T ss_pred             EcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence            99864 345566656666677777777777653

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=96.29  E-value=0.022  Score=52.73  Aligned_cols=88  Identities=14%  Similarity=0.159  Sum_probs=58.1

Q ss_pred             eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc----eeEEeCCcCeeEEEE-----CCCCCeEEEEec
Q 013871          187 EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRW-----NPKGKFLCLAGF  256 (434)
Q Consensus       187 ~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~----~~~~~~~~~~~~i~~-----SP~g~~l~~~~~  256 (434)
                      .+..-+-+...|.+++.-. ++..+.  +.+|+++|++||++.-    .+.++ .+.+|..++     .|....++++|.
T Consensus       290 ~~a~rlyh~Ssvtslq~Lq~s~q~Lm--aS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~Gd  366 (425)
T KOG2695|consen  290 WCAQRLYHDSSVTSLQILQFSQQKLM--ASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGD  366 (425)
T ss_pred             cceEEEEcCcchhhhhhhccccceEe--eccCcCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEccC
Confidence            3344444566666666554 344444  4789999999999622    23333 455555444     445567777874


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeCC
Q 013871          257 GNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      |   -..+||.++++.++.++.-+
T Consensus       367 D---cytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  367 D---CYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             e---eEEEEEecccCceeeccCCC
Confidence            4   49999999999999887665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.25  E-value=0.11  Score=52.74  Aligned_cols=196  Identities=13%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             eeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           55 IRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        55 ~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      -+++..++|++.++ .|.|.+|+-..... ...+.  ....+....+|++ +.++|+     +++.+.|.++.+...-+.
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~-e~lvAa-----gt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV-EYLVAA-----GTASGRVSVFQLNKELPR  111 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch-hHhhhh-----hcCCceEEeehhhccCCC
Confidence            35667889999985 48999998655321 11111  2223445667776 444442     456678888887652111


Q ss_pred             Cceeeeee---cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--CcceeeeecCCCCCeEEEEECcC
Q 013871          132 QPLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       132 ~~i~~~~~---~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      ..+....+   |+..++++.|+++|..+..     .|..|+.-     +..++..  .......-+...++|-.+... +
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-----GD~~Gkv~-----~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q  180 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYS-----GDSQGKVV-----LTELDSRQAFLSKSQEILSEDSEIVQLDYL-Q  180 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccEEee-----cCCCceEE-----EEEechhhhhccccceeeccCcceEEeecc-c
Confidence            11211111   4567889999999998765     45555532     2333321  000111112235677666655 2


Q ss_pred             CCEEEEEEccCCCeEEEEecccceeEEeCCcCeeE-----EEECCC----CCeEEEEecCCCCCeEEEEEcc-CCEEEEE
Q 013871          207 GSEFAVVYGFMPASATIFNKKCRPILELGSGPYNT-----VRWNPK----GKFLCLAGFGNLPGDMAFWDYV-DGKQLGT  276 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~-----i~~SP~----g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~  276 (434)
                       .++.| +..  -+..+++++.+.+.++++.++..     .+|-|-    ..-.+.++.-+    .++|..+ .|+.+.+
T Consensus       181 -~~LLV-Stl--~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG----~RlWead~~G~V~~T  252 (726)
T KOG3621|consen  181 -SYLLV-STL--TRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG----LRLWEADFAGEVIKT  252 (726)
T ss_pred             -ceehH-hhh--hhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC----CceEEeecceeEEEe
Confidence             33443 222  25677888766666666554443     333332    22333444332    6677655 3444443

>smart00320 WD40 WD40 repeats

Probab=96.08  E-value=0.022  Score=33.77  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=24.1

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+..+.|+|+++++++++.      |+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASD------DGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence            5567999999999999999      99999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.03  E-value=1.4  Score=41.61  Aligned_cols=127  Identities=16%  Similarity=0.144  Sum_probs=79.5

Q ss_pred             CCeEEEEECcCCCEEEEEEccCC------------CeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMP------------ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~------------~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      ..-++....|+|+..+   +.|.            +.++.+|..+..+..+  +-..-|.|+|||||+.|.++...  .+
T Consensus       111 ~r~ND~~v~pdG~~wf---gt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~--~~  185 (307)
T COG3386         111 NRPNDGVVDPDGRIWF---GDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP--AN  185 (307)
T ss_pred             CCCCceeEcCCCCEEE---eCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC--CC
Confidence            4557888899987666   4444            2456666544444333  23445889999999988888643  36


Q ss_pred             eEEEEEccC--C----EE-EEEee-CCC-ceEEEECCCCCEEEEEEcCCceeeCC-cEEEEeecCceeeeeecc--ccee
Q 013871          262 DMAFWDYVD--G----KQ-LGTTR-AEC-SVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFHHNGSLFFKKMFD--KLFQ  329 (434)
Q Consensus       262 ~i~iwd~~~--~----~~-i~~~~-~~~-~~~~~wspdg~~l~tas~~prl~~D~-~i~iw~~~g~~~~~~~~~--~~~~  329 (434)
                      .|+-|+...  +    +. ...+. ... .-.++...+|.+.+.+..      ++ .|.+|+-+|+++.....+  ...+
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~------~g~~v~~~~pdG~l~~~i~lP~~~~t~  259 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW------GGGRVVRFNPDGKLLGEIKLPVKRPTN  259 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc------CCceEEEECCCCcEEEEEECCCCCCcc
Confidence            888887752  2    11 11111 122 223778888888875554      43 899999999988877554  3344


Q ss_pred             eEEE
Q 013871          330 AEWK  333 (434)
Q Consensus       330 ~~w~  333 (434)
                      ++|.
T Consensus       260 ~~Fg  263 (307)
T COG3386         260 PAFG  263 (307)
T ss_pred             ceEe
Confidence            4443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.90  E-value=1.7  Score=41.61  Aligned_cols=243  Identities=12%  Similarity=0.138  Sum_probs=111.1

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC--CCCeE-EEEec-CCCCCCceE
Q 013871           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA--PGSHV-AVFVP-ESKGSPASV  120 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~--~~~~i-a~~~~-~~~~~~~~v  120 (434)
                      .| .|+|.|||+++++-..+.|++++...........+      ...+...++++|+  .+..+ .++.. .........
T Consensus         4 P~-~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PR-SMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EE-EEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ce-EEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            34 79999999999988889999999322111111111      1236789999995  12232 33332 122223333


Q ss_pred             EEEE--cCCCC----CCCceeee-ee---cccceeEEEECCCCCeEEEEEEeccc----ccCceeecceeEEEEeeCCcc
Q 013871          121 QIYA--CGKDL----QSQPLARR-SF---FRCSTVQLNWNRGSTGLLAVAQSDVD----KTNQSYYGESKLNYLTTDGTH  186 (434)
Q Consensus       121 ~i~~--~~~~~----~~~~i~~~-~~---~~~~~~~~~ws~~G~~l~~~~~~~~d----~~~~~~~g~~~l~~l~~~~~~  186 (434)
                      +|..  +....    ..+.+... ..   .......|.|.||| .|.+.+....+    .......|  .+..++..+.-
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G--~ilri~~dG~~  159 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRG--KILRIDPDGSI  159 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTT--EEEEEETTSSB
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccc--eEEEecccCcC
Confidence            4433  32210    01111111 11   12344579999999 55544322222    11112223  35666655531


Q ss_pred             eeeeecC----CCCCe--------EEEEECcC-CCEEEEEEccCCC-eEEEEec---------c------c---------
Q 013871          187 EGLVPLR----KEGPV--------HDVQWSYS-GSEFAVVYGFMPA-SATIFNK---------K------C---------  228 (434)
Q Consensus       187 ~~~v~l~----~~~~i--------~~v~wspd-g~~~av~~g~~~~-~v~l~d~---------~------~---------  228 (434)
                      ...-+.-    ....|        ..++|.|. |..++.-.|.... .|.+..-         .      .         
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~  239 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC  239 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred             CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence            0000100    01222        47999998 7766653332211 3333210         0      0         


Q ss_pred             ----ceeEEe-CCcCeeEEEECCCCC------eEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013871          229 ----RPILEL-GSGPYNTVRWNPKGK------FLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG  291 (434)
Q Consensus       229 ----~~~~~~-~~~~~~~i~~SP~g~------~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg  291 (434)
                          .++..+ +......+.|-....      .++++..+  .+.|...+++....+...    ...  .+..++..|||
T Consensus       240 ~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG  317 (331)
T PF07995_consen  240 PGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG  317 (331)
T ss_dssp             TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred             CCcCccceeecCccccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence                112222 223334455443222      23445543  368888887755322211    112  46779999999


Q ss_pred             CEEEEEEc
Q 013871          292 RYFMTATT  299 (434)
Q Consensus       292 ~~l~tas~  299 (434)
                      ..+++...
T Consensus       318 ~Lyv~~d~  325 (331)
T PF07995_consen  318 ALYVSDDS  325 (331)
T ss_dssp             EEEEEE-T
T ss_pred             eEEEEECC
Confidence            98888776

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.81  E-value=0.022  Score=37.08  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=29.9

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~  320 (434)
                      .+..++|+|....||.++.      ||.|.|+.++|+.+.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qriw   46 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRIW   46 (47)
T ss_pred             cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCcc
Confidence            4556999999999999999      999999999887653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.041  Score=53.97  Aligned_cols=180  Identities=13%  Similarity=0.158  Sum_probs=104.0

Q ss_pred             CCCceEEEEEcCCCC--CCCcee--eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee--
Q 013871          115 GSPASVQIYACGKDL--QSQPLA--RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--  188 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~--~~~~i~--~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--  188 (434)
                      ..+.+|++|.+....  .+..-+  +.+.|+..+..+.+-.+-.+++   ++|         |  .+++++..-+..-  
T Consensus       754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~---ScD---------~--giHlWDPFigr~Laq  819 (1034)
T KOG4190|consen  754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA---SCD---------G--GIHLWDPFIGRLLAQ  819 (1034)
T ss_pred             cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee---ecc---------C--cceeecccccchhHh
Confidence            456789999986421  122222  3334555565665555544432   222         1  3555543332111  


Q ss_pred             eeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEecc-cceeEEe-------CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          189 LVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       189 ~v~l~~~~~i~~v~wspd-g~~~av~~g~~~~~v~l~d~~-~~~~~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      ...-.+++.+..+.--|+ .+.+.+..+....++++||.+ |+-+-++       ..+.+.+++..|.|++++.+-   .
T Consensus       820 ~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---S  896 (1034)
T KOG4190|consen  820 MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---S  896 (1034)
T ss_pred             hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---c
Confidence            111123444545554454 344444333555699999987 3222222       346678999999999998775   4


Q ss_pred             CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE-EeecCce
Q 013871          260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHHNGSL  318 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i-w~~~g~~  318 (434)
                      +|.|.+.|.++|+.|....--  +...++ .|..+.|+....      |.++-+ |+.....
T Consensus       897 nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal------dHslaVnWhaldgi  951 (1034)
T KOG4190|consen  897 NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL------DHSLAVNWHALDGI  951 (1034)
T ss_pred             CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc------cceeEeeehhcCCe
Confidence            589999999999988765432  112222 466677777766      999999 9874443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.74  E-value=0.57  Score=46.98  Aligned_cols=111  Identities=15%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             CCCeEEEEECcCC-----CEEEEEEccCCCeEEEEecc------cceeE----Ee-CCcCe--eEEEECCCCCeEEEEec
Q 013871          195 EGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----EL-GSGPY--NTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       195 ~~~i~~v~wspdg-----~~~av~~g~~~~~v~l~d~~------~~~~~----~~-~~~~~--~~i~~SP~g~~l~~~~~  256 (434)
                      -..|+.+.|+|-+     ..+||-   .-..|++|-+.      .+.+.    ++ ..-++  -.+.|+|....|++-..
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~  132 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA  132 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEEe---ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec
Confidence            4678999999953     345542   23489999763      11111    11 11222  24789999998888764


Q ss_pred             CCCCCeEEEEEcc--CCEEEEEeeCCCceE-EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          257 GNLPGDMAFWDYV--DGKQLGTTRAECSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       257 ~~~~g~i~iwd~~--~~~~i~~~~~~~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ..   .-.++++.  +.+....+...+-++ -+|.+||+.|++|-.+     .=.-+|||-..
T Consensus       133 ~d---vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q  187 (671)
T PF15390_consen  133 RD---VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ  187 (671)
T ss_pred             Cc---eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence            32   23444543  335555566665554 7899999999998752     22346776533

>smart00320 WD40 WD40 repeats

Probab=95.67  E-value=0.038  Score=32.66  Aligned_cols=30  Identities=37%  Similarity=0.840  Sum_probs=25.8

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      +...++++.|+|+++++++++   .+|.+.+||
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence            567889999999999999888   556999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.65  E-value=1.5  Score=39.25  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=56.9

Q ss_pred             CCEEEEEEccCCCeEEEEecc-cceeEEe--CCcC----------e-eEEEECCCCCeEEEEecCCCCCe-EEEEEccCC
Q 013871          207 GSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGD-MAFWDYVDG  271 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~----------~-~~i~~SP~g~~l~~~~~~~~~g~-i~iwd~~~~  271 (434)
                      +..+++  +..++.+..+|.+ ++.+...  ....          . ..+.++ +| .+.+++   .+|. +.+ |..++
T Consensus       122 ~~~~~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg  193 (238)
T PF13360_consen  122 GDRLYV--GTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATG  193 (238)
T ss_dssp             TTEEEE--EETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTT
T ss_pred             cCEEEE--EeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCC
Confidence            555654  4446788888876 4444433  2111          1 223333 45 555554   2344 555 99999


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCcee
Q 013871          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF  319 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~  319 (434)
                      +.+....... ......+++..|+.++.      ++.+.+||. +|+.+
T Consensus       194 ~~~w~~~~~~-~~~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  194 EKLWSKPISG-IYSLPSVDGGTLYVTSS------DGRLYALDLKTGKVV  235 (238)
T ss_dssp             EEEEEECSS--ECECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred             CEEEEecCCC-ccCCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence            8765443222 22225678888888887      999999997 55543

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=0.25  Score=50.92  Aligned_cols=129  Identities=14%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC-----CcEEEEecCCeEEEEeCCCCCCce
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD-----EAVACRMATNEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d-----~~~la~~~~~~i~v~~~~~~~~~~   84 (434)
                      +|.|++|++     .|+.|.|-.+-+.+..+++..+    ....+++++||     .+.+++++...+.+++-.=++...
T Consensus        82 ~Gey~asCS-----~DGkv~I~sl~~~~~~~~~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~  152 (846)
T KOG2066|consen   82 EGEYVASCS-----DDGKVVIGSLFTDDEITQYDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD  152 (846)
T ss_pred             CCceEEEec-----CCCcEEEeeccCCccceeEecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc
Confidence            699999999     8999999999988887777665    45558899998     556666654337777743222211


Q ss_pred             eeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------ceeEEEECCCCCeE
Q 013871           85 LYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------STVQLNWNRGSTGL  156 (434)
Q Consensus        85 ~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------~~~~~~ws~~G~~l  156 (434)
                      ...++  -..|.++.|.   +.+|| |..+.     -|++|+++.   ++.+........      -...+.|.++.+ |
T Consensus       153 ~v~l~~~eG~I~~i~W~---g~lIA-Wand~-----Gv~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-L  219 (846)
T KOG2066|consen  153 SVVLSEGEGPIHSIKWR---GNLIA-WANDD-----GVKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDR-L  219 (846)
T ss_pred             ceeeecCccceEEEEec---CcEEE-EecCC-----CcEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCe-E
Confidence            12222  3358888887   44554 44333     368999887   555555444322      225688988754 4


Q ss_pred             EEEE
Q 013871          157 LAVA  160 (434)
Q Consensus       157 ~~~~  160 (434)
                      ++.+
T Consensus       220 VIGW  223 (846)
T KOG2066|consen  220 VIGW  223 (846)
T ss_pred             EEec
Confidence            4443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=95.52  E-value=0.02  Score=50.98  Aligned_cols=76  Identities=13%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEeeCC--CceEEEECC-CCCEEEEEEcCCceeeCCcEEEE
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~~~~--~~~~~~wsp-dg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ..+.+++-+|.-+.+++.|.  .+|.+-+||.++... ...+.+|  .+..+-|+| ++..|+|++.      ||.+..|
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se------dGslw~w  251 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE------DGSLWHW  251 (319)
T ss_pred             ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC------CCcEEEE
Confidence            34888899998776665554  458999999988733 2333444  555689998 5889999999      9999999


Q ss_pred             eecCceee
Q 013871          313 HHNGSLFF  320 (434)
Q Consensus       313 ~~~g~~~~  320 (434)
                      |-++..+.
T Consensus       252 das~~~l~  259 (319)
T KOG4714|consen  252 DASTTFLS  259 (319)
T ss_pred             cCCCceEE
Confidence            99987665

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.40  E-value=0.061  Score=54.42  Aligned_cols=109  Identities=11%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-  271 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-  271 (434)
                      .|.=-+++-.++++++  |..-|.+++|+-.++....+    ..+.+..+..|++..++|.|+   ..|.|.++-++.. 
T Consensus        35 ~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKEL  109 (726)
T ss_pred             eEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhccC
Confidence            3444455567788886  67778999998766554443    345566788999988888776   5579999987753 


Q ss_pred             --EE--EEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          272 --KQ--LGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 --~~--i~~~~~--~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                        ..  +.....  . .++.++||+||..|.+|..      .|.|.+-.++-
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~------~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS------QGKVVLTELDS  155 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecccccEEeecCC------CceEEEEEech
Confidence              22  222222  2 5667999999999999988      67776666554

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=95.12  E-value=0.18  Score=51.89  Aligned_cols=104  Identities=11%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      .|+|-|.|..++|.+..+.+....|+.+. .+|-.-..|...-.-.+.+..++|.-....++....|.|++|...++.-.
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY  329 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY  329 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence            47899999999999844333334566665 34422222221111113344677888888888888899999999886543


Q ss_pred             eeeeeecCCeeEEEEeCCCCCeEEE
Q 013871           84 ILYRLRVPGVAAFEVSKAPGSHVAV  108 (434)
Q Consensus        84 ~~~~~~~~~v~~~~~sp~~~~~ia~  108 (434)
                      ....+.++++.-+.|+|..+.++.+
T Consensus       330 LK~e~~ip~~s~vkwhpe~~nTl~f  354 (1243)
T COG5290         330 LKVERQIPGISYVKWHPEEKNTLLF  354 (1243)
T ss_pred             EEEeecCCCcceeeeccccCcEEEE
Confidence            3344567889999999986666543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.11  E-value=2.4  Score=38.04  Aligned_cols=66  Identities=9%  Similarity=0.042  Sum_probs=44.9

Q ss_pred             cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871            8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      .+++.+|++.+     .++.|..||..+|+.+.++.....  ... .+ ...++.+++...++.|..+|..+...
T Consensus        33 ~~~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~--~~~-~~-~~~~~~v~v~~~~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   33 VPDGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGP--ISG-AP-VVDGGRVYVGTSDGSLYALDAKTGKV   98 (238)
T ss_dssp             EEETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSC--GGS-GE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred             EEeCCEEEEEc-----CCCEEEEEECCCCCEEEEeecccc--ccc-ee-eecccccccccceeeeEecccCCcce
Confidence            44666676666     689999999999999888776321  111 22 33456666656677999999777543

...

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.97  E-value=3.4  Score=39.25  Aligned_cols=108  Identities=13%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--Ecc
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYV  269 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~  269 (434)
                      +++|++++-- +| ++++..|   .++.+|++.... +...  ...+......+..+.+|++|.   ....|.++  +.+
T Consensus        88 ~g~V~ai~~~-~~-~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD---~~~sv~~~~~~~~  159 (321)
T PF03178_consen   88 KGPVTAICSF-NG-RLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGD---AMKSVSLLRYDEE  159 (321)
T ss_dssp             SS-EEEEEEE-TT-EEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEE---SSSSEEEEEEETT
T ss_pred             cCcceEhhhh-CC-EEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEE---cccCEEEEEEEcc
Confidence            7899998865 34 4665444   599999986544 3322  233333334444467999887   33356665  443


Q ss_pred             CCE--EEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          270 DGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       270 ~~~--~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ..+  .+..-.. ..++.+.+-+|++.++.+..      ++.+.++.+..
T Consensus       160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~------~gnl~~l~~~~  203 (321)
T PF03178_consen  160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK------DGNLFVLRYNP  203 (321)
T ss_dssp             TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET------TSEEEEEEE-S
T ss_pred             CCEEEEEEecCCCccEEEEEEecCCcEEEEEcC------CCeEEEEEECC
Confidence            332  2332222 25666888877788888887      99999999863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.97  E-value=0.08  Score=34.48  Aligned_cols=34  Identities=12%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ...+.++.|+|...+||++.   .+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence            45688999999999999998   6689999988 5543

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=94.82  E-value=1.4  Score=46.89  Aligned_cols=243  Identities=14%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec---C--C--eEEEEeCCCCCCceeeeeecC--CeeEE
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA---T--N--EIQFFDTTDFPKGILYRLRVP--GVAAF   96 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---~--~--~i~v~~~~~~~~~~~~~~~~~--~v~~~   96 (434)
                      ++|.+-|...+.. +.+....  ...+..+.|||||++||.+.   .  +  .|.+-++.+... ...++.++  .|-..
T Consensus       329 ~~L~~~D~dG~n~-~~ve~~~--~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~-~~vkl~ve~aaiprw  404 (912)
T TIGR02171       329 GNLAYIDYTKGAS-RAVEIED--TISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS-GLVKLPVENAAIPRW  404 (912)
T ss_pred             CeEEEEecCCCCc-eEEEecC--CCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC-CceEeecccccccce
Confidence            4788888654443 3331121  15555899999999999841   2  2  588888876443 22344443  46666


Q ss_pred             EEeCCCCCeEEEEecCCCCCC-----ceEEEEEcCC----CCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc
Q 013871           97 EVSKAPGSHVAVFVPESKGSP-----ASVQIYACGK----DLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT  167 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~-----~~v~i~~~~~----~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~  167 (434)
                      .+..+++..| +|+.+.+...     ..-.-|.++=    +...+.+..-.+|..-...-...-.|..||-..-...+. 
T Consensus       405 rv~e~gdt~i-vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dga~hggvs~~~~lavtga~llr~~~~~~~~-  482 (912)
T TIGR02171       405 RVLENGDTVI-VYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDGAYHGGVSEDLNLAVSGARLLRAHVANEDV-  482 (912)
T ss_pred             EecCCCCeEE-EEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhccccccccccCCceeeehhhHhhhhhccccc-
Confidence            6777755555 4444332211     1234455541    111223333334432221111122233333111000000 


Q ss_pred             CceeecceeEEEEeeCCcceeeeecCCCC--CeEEEEECc-CCCEEEEEEccCC---CeEEEEecccceeEEeC--CcC-
Q 013871          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEG--PVHDVQWSY-SGSEFAVVYGFMP---ASATIFNKKCRPILELG--SGP-  238 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--~i~~v~wsp-dg~~~av~~g~~~---~~v~l~d~~~~~~~~~~--~~~-  238 (434)
                         -.|...+|+   ++...|.+.|.+++  ...-+.|-- .|..|+   |..=   ..+.|-|.+++.+..+.  .+. 
T Consensus       483 ---~~~~~~vwy---n~eqacn~sl~~d~~~rt~fldfgg~tg~~fv---g~~y~~he~~lvads~gklv~~v~ap~gyt  553 (912)
T TIGR02171       483 ---DNGKDDVWY---NGEQACNASLAKDGSKRTLFLDFGGSTGQAFV---GQKYGVHERLLVADSKGKLVRAVAAPAGYT  553 (912)
T ss_pred             ---ccCccceee---cchhccchhhhccCCcceEEEecCCccchhhc---cccccceeEEEEecCCCchhhhccCCCCcc
Confidence               012222333   25556666665433  333455543 455665   3322   26777788887766541  110 


Q ss_pred             eeEEEECCCCCeEEEEecCCC---CCeEEEEEccCCEEEEEeeCCCce
Q 013871          239 YNTVRWNPKGKFLCLAGFGNL---PGDMAFWDYVDGKQLGTTRAECSV  283 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~---~g~i~iwd~~~~~~i~~~~~~~~~  283 (434)
                      ...-.|--..+-++++..-|.   .-+|.+.|+.+++.+...++....
T Consensus       554 fdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~eg~elw  601 (912)
T TIGR02171       554 FDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVEGDELW  601 (912)
T ss_pred             ccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeecccccc
Confidence            001115444455556654443   347899999998877776664333

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=94.78  E-value=0.14  Score=53.52  Aligned_cols=95  Identities=14%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCC
Q 013871          215 GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDG  291 (434)
Q Consensus       215 g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg  291 (434)
                      |+-...+..+|+++......   ..+.+.-++.  +++++.+|.   -.|+|.+-|.++.+.++++.+|.-+..+|+-.|
T Consensus       153 Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~G  227 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQG  227 (1118)
T ss_pred             cchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccC
Confidence            44445777788876554433   3333554554  578888776   668999999999999999999988888999999


Q ss_pred             CEEEEEEcCCce---eeCCcEEEEee
Q 013871          292 RYFMTATTAPRL---QIDNGIKIFHH  314 (434)
Q Consensus       292 ~~l~tas~~prl---~~D~~i~iw~~  314 (434)
                      ..|++++.+-|.   .+|.-|+|||+
T Consensus       228 NlLitCG~S~R~~~l~~D~FvkVYDL  253 (1118)
T KOG1275|consen  228 NLLITCGYSMRRYNLAMDPFVKVYDL  253 (1118)
T ss_pred             CeEEEeecccccccccccchhhhhhh
Confidence            999999988774   58999999997

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.70  E-value=3.4  Score=37.89  Aligned_cols=232  Identities=14%  Similarity=0.135  Sum_probs=122.7

Q ss_pred             CCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe--cCCeEEEEeCCCCCCceeeeeecCC---eeEEEEeCCCCCeEE
Q 013871           34 ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM--ATNEIQFFDTTDFPKGILYRLRVPG---VAAFEVSKAPGSHVA  107 (434)
Q Consensus        34 ~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~--~~~~i~v~~~~~~~~~~~~~~~~~~---v~~~~~sp~~~~~ia  107 (434)
                      +.|+++......    ..-..+.|+|-.... ++.  =.-...+||.+......... ..++   .-.=.|||++..+.|
T Consensus        56 eaGk~v~~~~lp----aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-s~~~RHfyGHGvfs~dG~~LYA  130 (366)
T COG3490          56 EAGKIVFATALP----ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-SQEGRHFYGHGVFSPDGRLLYA  130 (366)
T ss_pred             cCCceeeeeecc----cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-cccCceeecccccCCCCcEEEe
Confidence            567777654432    111257888865433 333  22367788887654322211 1111   111257888543333


Q ss_pred             EEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE---ec--ccccCc-eeecceeEEEEe
Q 013871          108 VFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ---SD--VDKTNQ-SYYGESKLNYLT  181 (434)
Q Consensus       108 ~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~---~~--~d~~~~-~~~g~~~l~~l~  181 (434)
                      . -.+....-+.|-||+....  -+.+...+.|....-.+.|.+||..+++.-.   +.  ...+.- .-..+..|.+++
T Consensus       131 T-Endfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld  207 (366)
T COG3490         131 T-ENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLD  207 (366)
T ss_pred             e-cCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEe
Confidence            2 1122344578999998753  5666677778888889999999998776422   11  101000 001222344555


Q ss_pred             -eCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCC------eEEEEecccceeEEeC---------CcCeeEE
Q 013871          182 -TDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPA------SATIFNKKCRPILELG---------SGPYNTV  242 (434)
Q Consensus       182 -~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~------~v~l~d~~~~~~~~~~---------~~~~~~i  242 (434)
                       ..|.-.....|.   +.-.|..++.-+||...+-+ .++..      -+-.+ .+++++.-+.         ...+-+|
T Consensus       208 ~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~-~~g~~l~~~~~pee~~~~~anYigsi  285 (366)
T COG3490         208 AATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHF-RKGEPLEFLDLPEEQTAAFANYIGSI  285 (366)
T ss_pred             ccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeec-cCCCcCcccCCCHHHHHHHHhhhhhe
Confidence             334332333332   23467788888888766532 22111      11111 1233322221         2345578


Q ss_pred             EECCCCCeEEEEe-cCCCCCeEEEEEccCCEEEEEee
Q 013871          243 RWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       243 ~~SP~g~~l~~~~-~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +.+-+..++++.+ .||   ...+||..++..+....
T Consensus       286 A~n~~~glV~lTSP~GN---~~vi~da~tG~vv~~a~  319 (366)
T COG3490         286 AANRRDGLVALTSPRGN---RAVIWDAATGAVVSEAA  319 (366)
T ss_pred             eecccCCeEEEecCCCC---eEEEEEcCCCcEEeccc
Confidence            8887777766655 344   67789999998776543

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=94.67  E-value=0.6  Score=49.01  Aligned_cols=99  Identities=11%  Similarity=0.202  Sum_probs=70.4

Q ss_pred             CCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCC------CCCeEEEEEccCCEEEEE
Q 013871          206 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~------~~g~i~iwd~~~~~~i~~  276 (434)
                      +++.+.  +|...|+|.+-|.+ .+.++++  |.+.+.  .|.=+|+.|+++|+..      .|--|+|||++..+.+.-
T Consensus       186 Nnr~lf--~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P  261 (1118)
T KOG1275|consen  186 NNRNLF--CGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP  261 (1118)
T ss_pred             cCcEEE--eecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence            556666  58889999999986 5666766  666665  4556799999988753      255688999886332110


Q ss_pred             ------------------------------------ee------------CCCceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871          277 ------------------------------------TR------------AECSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       277 ------------------------------------~~------------~~~~~~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                                                          +.            +...+.+++|+.|..++.+-.      +|.
T Consensus       262 I~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~------~g~  335 (1118)
T KOG1275|consen  262 IQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH------EGH  335 (1118)
T ss_pred             cccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc------cCc
Confidence                                                00            112345889999999999998      999


Q ss_pred             EEEEee
Q 013871          309 IKIFHH  314 (434)
Q Consensus       309 i~iw~~  314 (434)
                      |.+|.-
T Consensus       336 v~~wa~  341 (1118)
T KOG1275|consen  336 VNLWAD  341 (1118)
T ss_pred             EeeecC
Confidence            999984

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.67  E-value=4.9  Score=39.50  Aligned_cols=92  Identities=7%  Similarity=0.094  Sum_probs=51.9

Q ss_pred             CCEEEEEEccCCCeEEEEecccc-eeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          207 GSEFAVVYGFMPASATIFNKKCR-PILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +..+.+  +..++.+..+|.+.. .+-...   .....+...  .+..|++++   .+|.|++.|..+++.+...+-.  
T Consensus       294 ~~~vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~---~~G~l~~ld~~tG~~~~~~~~~~~  366 (394)
T PRK11138        294 GGRIYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD---SEGYLHWINREDGRFVAQQKVDSS  366 (394)
T ss_pred             CCEEEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcCCC
Confidence            444554  345778888888543 332221   111111111  245666666   5689999999999988776532  


Q ss_pred             CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          281 CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       281 ~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .+.. ...  .+..|+.++.      |+.+..++
T Consensus       367 ~~~s~P~~--~~~~l~v~t~------~G~l~~~~  392 (394)
T PRK11138        367 GFLSEPVV--ADDKLLIQAR------DGTVYAIT  392 (394)
T ss_pred             cceeCCEE--ECCEEEEEeC------CceEEEEe
Confidence            1111 111  2446777777      77776654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.54  E-value=0.79  Score=48.57  Aligned_cols=123  Identities=11%  Similarity=0.230  Sum_probs=74.6

Q ss_pred             eEEEEeeCCccee-eeecCCCCCeEEEEECcCC--------CEEEEEEccCCCeEEEEeccc--ceeEE-----e-CCcC
Q 013871          176 KLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSG--------SEFAVVYGFMPASATIFNKKC--RPILE-----L-GSGP  238 (434)
Q Consensus       176 ~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg--------~~~av~~g~~~~~v~l~d~~~--~~~~~-----~-~~~~  238 (434)
                      .||.+++..+... .-.+....+|.+++  |+.        ..|+   |-.+..+..||.+-  +.+..     + ....
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tfl---Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFL---GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEE---EECCCceEEeccCCCCCceeeccccccccCCC
Confidence            4777777655321 11233344555544  321        2233   56677899999863  22221     2 2345


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..|++-+.+|. ||+|+   ..|.|++||.-..+.-..+.+  ..++.+..+.||++|+..+       +.-+.|.+.
T Consensus       580 Fs~~aTt~~G~-iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDGY-IAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCce-EEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence            66777777764 56676   678999999543322222322  3677799999999988665       677788875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.48  E-value=0.12  Score=32.60  Aligned_cols=31  Identities=6%  Similarity=-0.057  Sum_probs=23.3

Q ss_pred             CcceEEecCCCc---EEEEEecCCCCCCCcEEEEEcCCC
Q 013871            1 MLLLLTCLRVGL---IIQTFQKSSTPQEKNVILWKTETG   36 (434)
Q Consensus         1 ~V~~l~fSP~g~---~L~t~~~~~~~~d~~v~iWd~~~g   36 (434)
                      .|+++.|||...   +|+..+     .-+.|.|+|+.++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E-----~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAE-----HQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEc-----cCCeEEEEEcccC
Confidence            378999998655   666555     4578999999854

It contains a characteristic DLL sequence motif.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.39  E-value=1.2  Score=41.00  Aligned_cols=136  Identities=14%  Similarity=0.158  Sum_probs=90.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCC---cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~---~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+.++.|+|+.+.+..+ ...|..+.-.+.+++.+..++-   ..-.+|.|.-+|++.++--.   ++.++++.+...
T Consensus        85 ~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER---~~~l~~~~vd~~  160 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDER---DRALYLFTVDAD  160 (316)
T ss_pred             cccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehh---cceEEEEEEcCC
Confidence            3458999999999888775 5667777777888988887742   33356899988888877653   458888876644


Q ss_pred             E-EEE---------EeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce--ee--e---------eeccc
Q 013871          272 K-QLG---------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--FF--K---------KMFDK  326 (434)
Q Consensus       272 ~-~i~---------~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~--~~--~---------~~~~~  326 (434)
                      . .+.         .....  +.-.++|+|..+.|..+-.      -+=+.|+.+++..  +.  .         .....
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE------r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D  234 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE------RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD  234 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc------cCCcEEEEEecCCcccccccccCcccccceEeec
Confidence            1 111         11111  2223999999999999988      7888888876542  11  0         01234


Q ss_pred             ceeeEEEcCCCCCC
Q 013871          327 LFQAEWKPVSPDKF  340 (434)
Q Consensus       327 ~~~~~w~p~~~~~~  340 (434)
                      +..+.+++....|+
T Consensus       235 vSgl~~~~~~~~LL  248 (316)
T COG3204         235 VSGLEFNAITNSLL  248 (316)
T ss_pred             cccceecCCCCcEE
Confidence            56667776655544

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.16  E-value=0.16  Score=54.00  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             EccCCCeEEEEeccccee--EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-----CceE
Q 013871          214 YGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVT  284 (434)
Q Consensus       214 ~g~~~~~v~l~d~~~~~~--~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-----~~~~  284 (434)
                      .|...+.+-.+|..++.-  +.-  ..+++.+++|+-+|++++.|-   .+|.|.+||+..++.+..+..+     .+..
T Consensus       104 i~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~  180 (1206)
T KOG2079|consen  104 IGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIF  180 (1206)
T ss_pred             EEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence            366667888888876522  222  478999999999999988664   4489999999998776655433     4455


Q ss_pred             EEECCCCCEEEEEEc
Q 013871          285 SEWSPDGRYFMTATT  299 (434)
Q Consensus       285 ~~wspdg~~l~tas~  299 (434)
                      +.|..++..++++..
T Consensus       181 v~~t~~nS~llt~D~  195 (1206)
T KOG2079|consen  181 VGRTSQNSKLLTSDT  195 (1206)
T ss_pred             EEEeCCCcEEEEccC
Confidence            788888886666544

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.02  E-value=1.6  Score=46.41  Aligned_cols=123  Identities=12%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC--------CcEEEEecCCeEEEEeCCCCC-Cceeeeee----cC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD--------EAVACRMATNEIQFFDTTDFP-KGILYRLR----VP   91 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d--------~~~la~~~~~~i~v~~~~~~~-~~~~~~~~----~~   91 (434)
                      ...|.-.|++.|+.|..+..+..    .+...+.|+        ++.++...++.|..||..-.. +......+    ..
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~----~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDD----IPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCC----cceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            46788889999999999987642    224566664        345666678899999986432 11111111    11


Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ...+++-  .++.+||+     +...|.||||+--.   ...-..+...+..++.+.-+.||++|+..+.
T Consensus       579 ~Fs~~aT--t~~G~iav-----gs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~  638 (794)
T PF08553_consen  579 NFSCFAT--TEDGYIAV-----GSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK  638 (794)
T ss_pred             CceEEEe--cCCceEEE-----EeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence            2333333  33456665     35668999998433   3334444556788999999999999977653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.99  E-value=3.5  Score=40.16  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=56.6

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEE-eccc--------ceeEE-eC------CcCeeEEEECCCCCeEEEEecC-C
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKC--------RPILE-LG------SGPYNTVRWNPKGKFLCLAGFG-N  258 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~-d~~~--------~~~~~-~~------~~~~~~i~~SP~g~~l~~~~~~-~  258 (434)
                      ...+.+++.++|  +.|  +..+ .|..| |..+        +.+.+ +.      ....+.+.|.|||.+.++-+.. +
T Consensus        72 ~~p~Gi~~~~~G--lyV--~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~  146 (367)
T TIGR02604        72 SMVTGLAVAVGG--VYV--ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLA  146 (367)
T ss_pred             CCccceeEecCC--EEE--eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCC
Confidence            345789999988  433  2323 55545 4422        12222 32      2336789999999866554411 1


Q ss_pred             ---------------CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEE
Q 013871          259 ---------------LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       259 ---------------~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas  298 (434)
                                     ..|.|.-+|.+.++......+. +...++|+|+|+.+++-.
T Consensus       147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       147 SKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                           1256777777665432222222 556699999999877643

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=93.90  E-value=9.7  Score=39.97  Aligned_cols=291  Identities=14%  Similarity=0.110  Sum_probs=133.3

Q ss_pred             ceEEecCCCcEEEEEecCCC-C---CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CC--eEEEE
Q 013871            3 LLLTCLRVGLIIQTFQKSST-P---QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TN--EIQFF   75 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~-~---~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~--~i~v~   75 (434)
                      ....++|.+..++....... .   ....+.+-|..+   +......    .....+.|+||++++++.. ++  ..++|
T Consensus        16 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~----~~~~~~~~spdg~~~~~~~~~~~~~~~l~   88 (620)
T COG1506          16 SDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT---VRLLTFG----GGVSELRWSPDGSVLAFVSTDGGRVAQLY   88 (620)
T ss_pred             cCcccCCCCceeEEeeccccccccccccceEEEeccc---ccccccC----CcccccccCCCCCEEEEEeccCCCcceEE
Confidence            44567888888887664211 1   123444433332   2222111    4445789999999999886 32  23444


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC----CCC----CceEEEEEcCCC-C--------CCCceeeee
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES----KGS----PASVQIYACGKD-L--------QSQPLARRS  138 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~----~~~----~~~v~i~~~~~~-~--------~~~~i~~~~  138 (434)
                      -.....   .......++....|+|.+ ..+++..++.    .+.    +..+.+|..... .        .........
T Consensus        89 l~~~~g---~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~  164 (620)
T COG1506          89 LVDVGG---LITKTAFGVSDARWSPDG-DRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLG  164 (620)
T ss_pred             EEecCC---ceeeeecccccceeCCCC-CeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCccccccc
Confidence            332211   233444567788888884 4343321111    011    111222322221 0        011222333


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      ....++..+.|++++..++..... .+  ..-+..  ..+... ............+..+..+.|.++|+.+++.....+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~  238 (620)
T COG1506         165 LGNLDVVSFATDGDGRLVASIRLD-DD--ADPWVT--NLYVLI-EGNGELESLTPGEGSISKLAFDADGKSIALLGTESD  238 (620)
T ss_pred             CCCCceeeeeeCCCCceeEEeeec-cc--cCCceE--eeEEEe-cCCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCc
Confidence            445566677777777765544322 11  111111  111111 122122223334566889999999998877543333


Q ss_pred             C------eEEEEecccceeEE-e--CC--cCeeEEEEC-CCCCeEEEEecCCCCCeEEEEEccCC-EEEEEeeCCCceEE
Q 013871          219 A------SATIFNKKCRPILE-L--GS--GPYNTVRWN-PKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAECSVTS  285 (434)
Q Consensus       219 ~------~v~l~d~~~~~~~~-~--~~--~~~~~i~~S-P~g~~l~~~~~~~~~g~i~iwd~~~~-~~i~~~~~~~~~~~  285 (434)
                      .      .+.+++.+...+.. +  ..  ...-.+.+. +++..+.++..+  .|...+...... ..............
T Consensus       239 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~l~~~~~~~~~~~~~~~~~~~v~  316 (620)
T COG1506         239 RGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG--GGSSPLFRVDDLGGGVEGLSGDDGGVP  316 (620)
T ss_pred             cCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecC--CCceEEEEEeccCCceeeecCCCceEE
Confidence            1      34455521111111 1  01  000111222 222333333321  356776665532 12222233323344


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .|+.+|+.+++.-++|..  -..+.+++.
T Consensus       317 ~f~~~~~~~~~~~s~~~~--p~~i~~~~~  343 (620)
T COG1506         317 GFDVDGRKLALAYSSPTE--PPEIYLYDR  343 (620)
T ss_pred             EEeeCCCEEEEEecCCCC--ccceEEEcC
Confidence            555599999988876542  345666664

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=93.73  E-value=1.8  Score=45.06  Aligned_cols=100  Identities=18%  Similarity=0.269  Sum_probs=62.3

Q ss_pred             CCCeEEEEECcCCCEEEEEE---ccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~---g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .|--+.+.|-|+|..++.+-   +....++.+|.-.+-.--++     .......++|+-....++++. +|   .|.+|
T Consensus       246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n---~~~lw  321 (1243)
T COG5290         246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GN---LLKLW  321 (1243)
T ss_pred             ccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cc---eEEEE
Confidence            45557799999999999764   11222677775443221122     123345577877777666552 33   79999


Q ss_pred             EccCCEE--EEEeeCCCceEEEECCCCCEEEEEE
Q 013871          267 DYVDGKQ--LGTTRAECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       267 d~~~~~~--i~~~~~~~~~~~~wspdg~~l~tas  298 (434)
                      -..+..-  -.....+.+..+.|+|....-+--+
T Consensus       322 ttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~  355 (1243)
T COG5290         322 TTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR  355 (1243)
T ss_pred             EccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence            9887743  3344556778899999765544433

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.67  E-value=2  Score=41.90  Aligned_cols=99  Identities=11%  Similarity=0.165  Sum_probs=65.4

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+|+|.++.||+|.+.+||  ...+..|.+++..+....       ......+..++|+.. +-+|+...    .-|.+|
T Consensus        65 d~G~I~SIkFSlDnkilAV--QR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~----~G~e~y  137 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAV--QRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITD----QGIEFY  137 (657)
T ss_pred             CCCceeEEEeccCcceEEE--EecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEec----CCeEEE
Confidence            4789999999999999997  556779999987432211       113445778899877 55555542    237777


Q ss_pred             EccCC-EEEEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          267 DYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       267 d~~~~-~~i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      -+... +.++..+.+  ++.-..|.|+-+.++.+++
T Consensus       138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            66543 233333333  5555899999888776664

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.65  E-value=0.97  Score=46.63  Aligned_cols=95  Identities=18%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             CEEEEEEccCCCeEEEEecccceeE---Ee-CCcCeeEEEE--CCCCCeEEEEecCCCCCeEEEEEcc---------CCE
Q 013871          208 SEFAVVYGFMPASATIFNKKCRPIL---EL-GSGPYNTVRW--NPKGKFLCLAGFGNLPGDMAFWDYV---------DGK  272 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~~~~~---~~-~~~~~~~i~~--SP~g~~l~~~~~~~~~g~i~iwd~~---------~~~  272 (434)
                      +.+|++ ......++|||.+...+-   .| ..+.|.++.|  .|+|+.++..||++   .|.++--.         +..
T Consensus        41 ~k~a~V-~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~---~v~l~~Q~R~dy~~~~p~w~  116 (631)
T PF12234_consen   41 KKIAVV-DSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH---HVLLYTQLRYDYTNKGPSWA  116 (631)
T ss_pred             CcEEEE-ECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc---EEEEEEccchhhhcCCcccc
Confidence            456665 333459999999754421   23 4678888887  57899999999887   88887432         112


Q ss_pred             EE-----EEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          273 QL-----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i-----~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+     ..+..|.+.+..|-+||..++.+        +|.+.|++-
T Consensus       117 ~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk  155 (631)
T PF12234_consen  117 PIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK  155 (631)
T ss_pred             eeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence            22     23344677779999999876654        567777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=93.57  E-value=6.6  Score=36.93  Aligned_cols=96  Identities=17%  Similarity=0.345  Sum_probs=67.7

Q ss_pred             ccCCCeEEEE---ecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE-EEEEeeCC--CceEEE
Q 013871          215 GFMPASATIF---NKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSE  286 (434)
Q Consensus       215 g~~~~~v~l~---d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~~--~~~~~~  286 (434)
                      |...++++..   ......+..+  |.+.+.++.|.|..+.|.++..+   ..+.+||+--++ ......+|  .+..+.
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d---~~vi~wdigg~~g~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD---HSVIMWDIGGRKGTAYELQGHNDKVQALS  247 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc---CceEEEeccCCcceeeeeccchhhhhhhh
Confidence            5555655543   3345666666  78899999999999999988855   499999986443 22333333  344466


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      .-+--+.+.++..      |+.|.+|+++-+..
T Consensus       248 ~~~~t~~l~S~~e------dg~i~~w~mn~~r~  274 (404)
T KOG1409|consen  248 YAQHTRQLISCGE------DGGIVVWNMNVKRV  274 (404)
T ss_pred             hhhhheeeeeccC------CCeEEEEeccceee
Confidence            6666778888888      99999999876543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.44  E-value=3  Score=32.62  Aligned_cols=98  Identities=13%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~  227 (434)
                      .+..+|..-|+..+  .|..++.|.++.-+            ..+.....|..++-... .+|+  |+..+++|-+|+..
T Consensus         9 d~d~dg~~eLlvGs--~D~~IRvf~~~e~~------------~Ei~e~~~v~~L~~~~~-~~F~--Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    9 DFDGDGENELLVGS--DDFEIRVFKGDEIV------------AEITETDKVTSLCSLGG-GRFA--YALANGTVGVYDRS   71 (111)
T ss_pred             ecCCCCcceEEEec--CCcEEEEEeCCcEE------------EEEecccceEEEEEcCC-CEEE--EEecCCEEEEEeCc
Confidence            34556655444443  34445544444333            23333556777766654 5677  68889999999875


Q ss_pred             cceeEEeCCcCeeEEEE---CCCCC-eEEEEecCCCCCeEEE
Q 013871          228 CRPILELGSGPYNTVRW---NPKGK-FLCLAGFGNLPGDMAF  265 (434)
Q Consensus       228 ~~~~~~~~~~~~~~i~~---SP~g~-~l~~~~~~~~~g~i~i  265 (434)
                      ...-..-.+..++++.+   +-||. -|++|-   .+|.|.+
T Consensus        72 ~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~Gw---snGkve~  110 (111)
T PF14783_consen   72 QRLWRIKSKNQVTSMAFYDINGDGVPELIVGW---SNGKVEV  110 (111)
T ss_pred             ceeeeeccCCCeEEEEEEcCCCCCceEEEEEe---cCCeEEe
Confidence            44332223344555443   33444 344443   3367654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.35  E-value=6.3  Score=42.47  Aligned_cols=112  Identities=18%  Similarity=0.364  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEec----------------ccceeEEe-----CCcCeeEEEE
Q 013871          193 RKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFNK----------------KCRPILEL-----GSGPYNTVRW  244 (434)
Q Consensus       193 ~~~~~i~~v~ws---p----dg~~~av~~g~~~~~v~l~d~----------------~~~~~~~~-----~~~~~~~i~~  244 (434)
                      ....||..|.|+   .    ..+.|+|.+.   ..++|+..                ..+++..+     +..+...++|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~---~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~F  153 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE---TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAF  153 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcC---CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEe
Confidence            447899999998   2    2357776543   36777761                12334433     4557788999


Q ss_pred             CCCC-CeEEEEecCCCCCeEEEEEccCC-----EEE-------EEe-eC---CCce-EEEECCCCCEEEEEEcCCceeeC
Q 013871          245 NPKG-KFLCLAGFGNLPGDMAFWDYVDG-----KQL-------GTT-RA---ECSV-TSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       245 SP~g-~~l~~~~~~~~~g~i~iwd~~~~-----~~i-------~~~-~~---~~~~-~~~wspdg~~l~tas~~prl~~D  306 (434)
                      +|.. +.||+..   ..|+..|||+..+     ..+       ..+ ..   .... .+.|.++-..|+++.       .
T Consensus       154 nP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-------r  223 (765)
T PF10214_consen  154 NPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-------R  223 (765)
T ss_pred             ccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-------C
Confidence            9955 4788877   6689999999211     011       111 11   1112 389999988888887       5


Q ss_pred             CcEEEEeecCc
Q 013871          307 NGIKIFHHNGS  317 (434)
Q Consensus       307 ~~i~iw~~~g~  317 (434)
                      ..+.++|+.+.
T Consensus       224 ~~l~~~d~~~~  234 (765)
T PF10214_consen  224 SKLMLIDFESN  234 (765)
T ss_pred             CceEEEECCCC
Confidence            67778887654

These proteins are found in fungi.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=4.9  Score=41.73  Aligned_cols=50  Identities=12%  Similarity=0.310  Sum_probs=39.1

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      ..|+|++ .+|+.+.+..-.+  ...+ .+-||.|+.+++...+++++||+...
T Consensus        64 ~~I~If~-~sG~lL~~~~w~~--~~lI-~mgWs~~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFN-ISGQLLGRILWKH--GELI-GMGWSDDEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEe-ccccchHHHHhcC--CCee-eecccCCceEEEEeccceEEEeecch
Confidence            3588888 4687777655443  2555 88999999999999999999999854

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=1.4  Score=43.70  Aligned_cols=127  Identities=11%  Similarity=0.207  Sum_probs=73.8

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE--EE---EEEccCCCeEEEEeccccee--------EEe-CCcCeeE
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE--FA---VVYGFMPASATIFNKKCRPI--------LEL-GSGPYNT  241 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~--~a---v~~g~~~~~v~l~d~~~~~~--------~~~-~~~~~~~  241 (434)
                      .||.+++..+.. .-.-.-+..|.-+.+.|+.+.  +.   .+-|-.+..|.-||.+.+-.        +++ .....+|
T Consensus       357 ~l~klDIE~GKI-VeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc  435 (644)
T KOG2395|consen  357 KLYKLDIERGKI-VEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC  435 (644)
T ss_pred             cceeeeccccee-eeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence            477777766531 111111233666677776542  11   01156677888899863222        122 2334455


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ++-.-+| +|++|+   ++|.|++||.-...--..+.+  ..+..+.-+.||.+|+..+       +..+.+-+.
T Consensus       436 ~aTT~sG-~IvvgS---~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t  499 (644)
T KOG2395|consen  436 FATTESG-YIVVGS---LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT  499 (644)
T ss_pred             eeecCCc-eEEEee---cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence            5555554 677787   778999999832222222332  3677799999999987655       677776665

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.88  E-value=14  Score=36.38  Aligned_cols=231  Identities=13%  Similarity=0.120  Sum_probs=95.6

Q ss_pred             CCcEEEEe--cCCeEEEEeCCC-CCCceeeee-ecC------Cee---EEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           60 DEAVACRM--ATNEIQFFDTTD-FPKGILYRL-RVP------GVA---AFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        60 d~~~la~~--~~~~i~v~~~~~-~~~~~~~~~-~~~------~v~---~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +.++|+..  .++.|+|+|+.. .......+. ..+      ++.   .+---|++.-+|.+.-...++.++-+-+++-.
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            45666665  457999999873 333222222 110      111   12223443345555444444666666676665


Q ss_pred             CCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEec-----------ccccCceeecceeEEEEeeCCc-ceeeee
Q 013871          127 KDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSD-----------VDKTNQSYYGESKLNYLTTDGT-HEGLVP  191 (434)
Q Consensus       127 ~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~-----------~d~~~~~~~g~~~l~~l~~~~~-~~~~v~  191 (434)
                      ++   ..+......   ..--..+-|+|.-+.++.. +-.           .|.... -||. .|+.++.... ..+.+.
T Consensus       166 tf---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSS-eWg~P~~~~~Gf~~~d~~~~-~yG~-~l~vWD~~~r~~~Q~id  239 (461)
T PF05694_consen  166 TF---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISS-EWGAPSMFEKGFNPEDLEAG-KYGH-SLHVWDWSTRKLLQTID  239 (461)
T ss_dssp             T-----EEEE--SB-TT------EEEETTTTEEEE--B---HHHHTT---TTTHHHH--S---EEEEEETTTTEEEEEEE
T ss_pred             cc---cccceeccCCCCCCCCCCeEEcCCCCEEEEe-ccCChhhcccCCChhHhhcc-cccC-eEEEEECCCCcEeeEEe
Confidence            42   222221111   1122467788876654321 100           011111 2443 4666665443 234455


Q ss_pred             cCCCCC-eEEEEEC--cCCCEEEEEEccCCCeEEEEec-c-----cceeEEeC-------------------CcCeeEEE
Q 013871          192 LRKEGP-VHDVQWS--YSGSEFAVVYGFMPASATIFNK-K-----CRPILELG-------------------SGPYNTVR  243 (434)
Q Consensus       192 l~~~~~-i~~v~ws--pdg~~~av~~g~~~~~v~l~d~-~-----~~~~~~~~-------------------~~~~~~i~  243 (434)
                      |..++. ...+.|.  |+..+=.+ ...-.++|.+|-. +     .+.+.++.                   ..-++.|.
T Consensus       240 Lg~~g~~pLEvRflH~P~~~~gFv-g~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~  318 (461)
T PF05694_consen  240 LGEEGQMPLEVRFLHDPDANYGFV-GCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL  318 (461)
T ss_dssp             S-TTEEEEEEEEE-SSTT--EEEE-EEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred             cCCCCCceEEEEecCCCCccceEE-EEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence            554442 3455555  44443332 2333446665532 1     23333332                   13468899


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC------------------CceEEEECCCCCEEEEEEc
Q 013871          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE------------------CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~------------------~~~~~~wspdg~~l~tas~  299 (434)
                      .|.|.++|.++.+..  |.|+.||+.+-   +++....-.                  ..--++.|-||+.|...++
T Consensus       319 iSlDDrfLYvs~W~~--GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  319 ISLDDRFLYVSNWLH--GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             E-TTS-EEEEEETTT--TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             EccCCCEEEEEcccC--CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            999999999998854  99999999853   555543211                  1123889999999988775

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.57  E-value=2.4  Score=42.14  Aligned_cols=121  Identities=10%  Similarity=0.084  Sum_probs=75.0

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc--------EEEEecCCeEEEEeCCCCCC--ceeeeee-c---C
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA--------VACRMATNEIQFFDTTDFPK--GILYRLR-V---P   91 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~--------~la~~~~~~i~v~~~~~~~~--~~~~~~~-~---~   91 (434)
                      ..|+=.|++.|+.+..+..+.    .++.++++||.+        .|+..+++.|.-||+.-.+.  ......+ .   .
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~----di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~  431 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFED----DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKN  431 (644)
T ss_pred             CcceeeecccceeeeEeeccC----CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccc
Confidence            456777889999999888763    366788888754        45556788999999753222  1111111 0   1


Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      +..++  ...++.+|++     ++..|.|+||+--.   .+.-..+......+..+.-+.+|++|+..+
T Consensus       432 nFsc~--aTT~sG~Ivv-----gS~~GdIRLYdri~---~~AKTAlPgLG~~I~hVdvtadGKwil~Tc  490 (644)
T KOG2395|consen  432 NFSCF--ATTESGYIVV-----GSLKGDIRLYDRIG---RRAKTALPGLGDAIKHVDVTADGKWILATC  490 (644)
T ss_pred             cccee--eecCCceEEE-----eecCCcEEeehhhh---hhhhhcccccCCceeeEEeeccCcEEEEec
Confidence            12222  2223445554     35668999999633   333444555666777788888999987654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.53  E-value=11  Score=34.53  Aligned_cols=74  Identities=14%  Similarity=0.061  Sum_probs=48.3

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      ..|.|-.+|.++-+.+.+   ....|+.+|+.+|+.+........ -.+   .+..-.|.-+..+--++...+||..++.
T Consensus        48 QGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgE---Git~~~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGE---GITILGDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EE---EEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccce---eEEEECCEEEEEEecCCeEEEEccccce
Confidence            357777788888777754   346899999999998766544321 012   2333344445555577899999998865


Q ss_pred             C
Q 013871           82 K   82 (434)
Q Consensus        82 ~   82 (434)
                      .
T Consensus       122 ~  122 (264)
T PF05096_consen  122 K  122 (264)
T ss_dssp             E
T ss_pred             E
Confidence            4

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.49  E-value=7.2  Score=35.68  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=49.3

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~   88 (434)
                      |-=|.+||.      ++...+||..+.+.+.+|....   ++| .++  .|++.|..+ +.+.|+++|..++.......+
T Consensus       100 d~l~qLTWk------~~~~f~yd~~tl~~~~~~~y~~---EGW-GLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  100 DKLYQLTWK------EGTGFVYDPNTLKKIGTFPYPG---EGW-GLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             TEEEEEESS------SSEEEEEETTTTEEEEEEE-SS---S---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             CEEEEEEec------CCeEEEEccccceEEEEEecCC---cce-EEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence            334555665      5789999999999999887643   899 777  566666655 567999999988765433333


Q ss_pred             e-----cCCeeEEEEeC
Q 013871           89 R-----VPGVAAFEVSK  100 (434)
Q Consensus        89 ~-----~~~v~~~~~sp  100 (434)
                      .     +..+..+++-.
T Consensus       168 ~~~g~pv~~LNELE~i~  184 (264)
T PF05096_consen  168 TDNGRPVSNLNELEYIN  184 (264)
T ss_dssp             EETTEE---EEEEEEET
T ss_pred             EECCEECCCcEeEEEEc
Confidence            3     33577777764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.08  E-value=1.2  Score=48.02  Aligned_cols=139  Identities=11%  Similarity=0.062  Sum_probs=87.9

Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e----EEe--------CCcCeeEEEECCCCCeEEEEecC
Q 013871          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I----LEL--------GSGPYNTVRWNPKGKFLCLAGFG  257 (434)
Q Consensus       192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~----~~~--------~~~~~~~i~~SP~g~~l~~~~~~  257 (434)
                      +.++-+|+.+...+|+...+++....+..|..||++.-.  .    .-|        ......++.|+|.=-...+... 
T Consensus        97 v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l-  175 (1405)
T KOG3630|consen   97 VEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL-  175 (1405)
T ss_pred             eeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-
Confidence            344678888888899888888777766688999986211  1    101        1233457889986543222221 


Q ss_pred             CCCCeEEEEEccCC-EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec------cccee
Q 013871          258 NLPGDMAFWDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF------DKLFQ  329 (434)
Q Consensus       258 ~~~g~i~iwd~~~~-~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~------~~~~~  329 (434)
                       .++.|.+.-+.-. .....+.- ...+.++|||.|..++.+-.      .+++.-|...++.....+.      .++.+
T Consensus       176 -~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl~  248 (1405)
T KOG3630|consen  176 -SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVLS  248 (1405)
T ss_pred             -cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCcceeE
Confidence             2457777665432 22222222 25667999999999999988      8888889888875444322      34677


Q ss_pred             eEEEcCCCC
Q 013871          330 AEWKPVSPD  338 (434)
Q Consensus       330 ~~w~p~~~~  338 (434)
                      |.|--.-..
T Consensus       249 v~Wl~t~ef  257 (1405)
T KOG3630|consen  249 VTWLSTQEF  257 (1405)
T ss_pred             EEEecceeE
Confidence            888654333

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=90.99  E-value=1.6  Score=27.02  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=28.3

Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013871          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW  287 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w  287 (434)
                      |+|++|.++..+  .+.|.++|..+++.+..+.-. ....+.+
T Consensus         1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            688888887654  379999999998877776543 3334444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.85  E-value=0.1  Score=52.33  Aligned_cols=147  Identities=14%  Similarity=0.098  Sum_probs=80.4

Q ss_pred             ceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCC--cE--EEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEe
Q 013871            3 LLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETG--EA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFD   76 (434)
Q Consensus         3 ~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g--~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~   76 (434)
                      ++++|++- .+.||..- ..-..|..+.|||+.++  .+  -..|...  ......+++|-.|.+++.++.. ..++++|
T Consensus       106 t~lAwneLDtn~LAagl-dkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  106 TSLAWNELDTNHLAAGL-DKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFD  182 (783)
T ss_pred             cccccccccHHHHHhhh-hhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhh
Confidence            45666663 44555432 11134678999999887  22  1223331  1133446788899998888855 5999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee----cccceeEEEECCC
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRG  152 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~----~~~~~~~~~ws~~  152 (434)
                      +..-. .....+...-+..+.++|-...++|.+.      .+.|-+||.+... ..++.+..-    .......++|.|.
T Consensus       183 lRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rni-enpl~~i~~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  183 LRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNI-ENPLQIILRNENKKPKQLFALAYCPT  254 (783)
T ss_pred             hhhhh-hhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhh-ccHHHHHhhCCCCcccceeeEEeccC
Confidence            76311 1122233334566777774445555432      4678899942210 222221111    1123568899997


Q ss_pred             CCeEEEEE
Q 013871          153 STGLLAVA  160 (434)
Q Consensus       153 G~~l~~~~  160 (434)
                      .+.++...
T Consensus       255 rtglla~l  262 (783)
T KOG1008|consen  255 RTGLLAVL  262 (783)
T ss_pred             Ccchhhhh
Confidence            66655443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.47  E-value=0.69  Score=28.44  Aligned_cols=29  Identities=24%  Similarity=0.600  Sum_probs=19.4

Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ......|||||++|+.++....   .+...||
T Consensus        10 ~~~~p~~SpDGk~i~f~s~~~~---~g~~diy   38 (39)
T PF07676_consen   10 DDGSPAWSPDGKYIYFTSNRND---RGSFDIY   38 (39)
T ss_dssp             SEEEEEE-TTSSEEEEEEECT-----SSEEEE
T ss_pred             cccCEEEecCCCEEEEEecCCC---CCCcCEE
Confidence            3445899999999999987411   1666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=90.28  E-value=7.4  Score=30.44  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             EEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          209 EFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +|+  .|+.|..|++|+-. ..+.++ ....+..+.-...+++ +.+-   .+|+|-+|+...
T Consensus        17 eLl--vGs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~F-~Y~l---~NGTVGvY~~~~   72 (111)
T PF14783_consen   17 ELL--VGSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGRF-AYAL---ANGTVGVYDRSQ   72 (111)
T ss_pred             eEE--EecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCEE-EEEe---cCCEEEEEeCcc
Confidence            455  38889999999765 445555 5677888887777664 4443   458899987643

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.25  E-value=1.9  Score=38.56  Aligned_cols=66  Identities=12%  Similarity=0.188  Sum_probs=46.0

Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------------eCCCceEEEECCCCCEEEEEEcCCceee
Q 013871          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------------~~~~~~~~~wspdg~~l~tas~~prl~~  305 (434)
                      +.+..+|++|++..   .+|.+++||+.+++.+...                ....+..+..+.+|.-|++-+       
T Consensus        16 ~~l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------   85 (219)
T PF07569_consen   16 SFLECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------   85 (219)
T ss_pred             EEEEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------
Confidence            34556788888777   6689999999998765432                223555688888888877765       


Q ss_pred             CCcEEEEeecCc
Q 013871          306 DNGIKIFHHNGS  317 (434)
Q Consensus       306 D~~i~iw~~~g~  317 (434)
                      ++....|+.+=.
T Consensus        86 ng~~y~y~~~L~   97 (219)
T PF07569_consen   86 NGDSYSYSPDLG   97 (219)
T ss_pred             CCCEEEeccccc
Confidence            566677776433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.25  E-value=1.2  Score=39.84  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEE------eecC-----cCCCCCCeeeecCCCcEEEEecCCeEE
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQL------FQKN-----MTKTTWPSIRFSSDEAVACRMATNEIQ   73 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~------~~~~-----~~~~~~~~~~~S~d~~~la~~~~~~i~   73 (434)
                      +.+..+|.||+...     .++.+++||+.+++.+..-      ....     .....+..+..+.+|.-++...++...
T Consensus        16 ~~l~~~~~~Ll~iT-----~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y   90 (219)
T PF07569_consen   16 SFLECNGSYLLAIT-----SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSY   90 (219)
T ss_pred             EEEEeCCCEEEEEe-----CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEE
Confidence            44667899999888     8899999999998775432      0000     011233344555566655555555555


Q ss_pred             EEeC
Q 013871           74 FFDT   77 (434)
Q Consensus        74 v~~~   77 (434)
                      .|+.
T Consensus        91 ~y~~   94 (219)
T PF07569_consen   91 SYSP   94 (219)
T ss_pred             Eecc
Confidence            5554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.01  E-value=9.2  Score=34.70  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=64.1

Q ss_pred             CcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC
Q 013871          204 SYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       204 spdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                      -+|.+.++++ |+..+++.-.|.+. +.+.+. -...+.+-+.- -|.++++|-   ..|.++|.+.++|+++..+....
T Consensus        19 ~~dskT~v~i-gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   19 CNDSKTLVVI-GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             ecCCceEEEE-ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEE---ccCcEEEEEecchhheeeeeehh
Confidence            3455666654 66666666666643 322222 12222211111 478888887   55799999999998888776653


Q ss_pred             ce--EEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          282 SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       282 ~~--~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+  ...-.+||..|..++.      |+.++.-|+
T Consensus        94 ~vk~~a~~d~~~glIycgsh------d~~~yalD~  122 (354)
T KOG4649|consen   94 TVKVRAQCDFDGGLIYCGSH------DGNFYALDP  122 (354)
T ss_pred             hhccceEEcCCCceEEEecC------CCcEEEecc
Confidence            32  2566789999999999      888877776

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.84  E-value=0.85  Score=48.81  Aligned_cols=69  Identities=10%  Similarity=0.119  Sum_probs=50.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~   77 (434)
                      |++++|+-+|++|+.+-     .+|.|.+||+..++.++.+.........+-.+.|..++..+.++.. |.  +|+.
T Consensus       133 Vtsvafn~dg~~l~~G~-----~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  133 VTSVAFNQDGSLLLAGL-----GDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceeeEecCCCceecccc-----CCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            78999999999998766     6899999999999888776654432244446677777776665533 33  5654

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=89.78  E-value=2.6  Score=44.91  Aligned_cols=76  Identities=17%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeccc--ceeEEe--CCcCeeEEEECCC
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKC--RPILEL--GSGPYNTVRWNPK  247 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~--~--~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~  247 (434)
                      .|.+++.+|.....+.+....+|.+.+|||||++++++++...  +  .|.+-|+..  ..+..+  ....|-.-...++
T Consensus       330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~  409 (912)
T TIGR02171       330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN  409 (912)
T ss_pred             eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence            5788888887666666777889999999999999998656655  3  577778753  223333  4555555566677


Q ss_pred             CCeE
Q 013871          248 GKFL  251 (434)
Q Consensus       248 g~~l  251 (434)
                      |..+
T Consensus       410 gdt~  413 (912)
T TIGR02171       410 GDTV  413 (912)
T ss_pred             CCeE
Confidence            7643

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.68  E-value=16  Score=33.28  Aligned_cols=71  Identities=8%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      |.+++...     ..+.|.+-++++|+....|.....  -.+ ..+-.+|+.++..++ |++.+..|.....  .+.+.+
T Consensus        63 gdfVV~GC-----y~g~lYfl~~~tGs~~w~f~~~~~--vk~-~a~~d~~~glIycgshd~~~yalD~~~~~--cVyksk  132 (354)
T KOG4649|consen   63 GDFVVLGC-----YSGGLYFLCVKTGSQIWNFVILET--VKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYG--CVYKSK  132 (354)
T ss_pred             CCEEEEEE-----ccCcEEEEEecchhheeeeeehhh--hcc-ceEEcCCCceEEEecCCCcEEEecccccc--eEEecc
Confidence            55555555     457788889999987777766532  333 446677888888874 6688887776543  334444


Q ss_pred             cC
Q 013871           90 VP   91 (434)
Q Consensus        90 ~~   91 (434)
                      ..
T Consensus       133 cg  134 (354)
T KOG4649|consen  133 CG  134 (354)
T ss_pred             cC
Confidence            33

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.60  E-value=1.1  Score=27.56  Aligned_cols=31  Identities=23%  Similarity=0.589  Sum_probs=19.9

Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+......|||||+.|+..+..+..|.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3455678999999998887754323555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.45  E-value=1.7  Score=27.57  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=24.4

Q ss_pred             cCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccC
Q 013871          237 GPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       237 ~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      +.+.++.|||..   .+|+.+.   ..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence            457889999854   4888876   557999999984

It contains a characteristic DLL sequence motif.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.42  E-value=31  Score=36.18  Aligned_cols=170  Identities=14%  Similarity=0.156  Sum_probs=81.3

Q ss_pred             eEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec--C-CC
Q 013871          119 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL--R-KE  195 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~-~~  195 (434)
                      .|+||++.    ++.+......+.+.+.|.|+.+.+.|++.    .+.+         ++..+..|........  + ..
T Consensus        65 ~I~If~~s----G~lL~~~~w~~~~lI~mgWs~~eeLI~v~----k~g~---------v~Vy~~~ge~ie~~svg~e~~~  127 (829)
T KOG2280|consen   65 YIRIFNIS----GQLLGRILWKHGELIGMGWSDDEELICVQ----KDGT---------VHVYGLLGEFIESNSVGFESQM  127 (829)
T ss_pred             eEEEEecc----ccchHHHHhcCCCeeeecccCCceEEEEe----ccce---------EEEeecchhhhccccccccccc
Confidence            57888875    57777777777789999999988766553    1111         2333333332221111  1 13


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEE-ecccceeEEeCCcCeeE---EEE--CCCC-CeEEEEecCCCCC-eEEEEE
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELGSGPYNT---VRW--NPKG-KFLCLAGFGNLPG-DMAFWD  267 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~-d~~~~~~~~~~~~~~~~---i~~--SP~g-~~l~~~~~~~~~g-~i~iwd  267 (434)
                      ..|..+.+..+|  +++.+.+  +++.+- +.....+..+..-|.+.   .+|  .+++ ...++.+-+-..| .+.--+
T Consensus       128 ~~I~ec~~f~~G--Vavlt~~--g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~  203 (829)
T KOG2280|consen  128 SDIVECRFFHNG--VAVLTVS--GQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVE  203 (829)
T ss_pred             CceeEEEEecCc--eEEEecC--CcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhccccee
Confidence            456666666666  4443443  344443 33332333332222221   222  2222 2111111110000 111111


Q ss_pred             ccCCEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          268 YVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       268 ~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ..+......... ..+..+..||.+++|+--+.      +|.|.+-..+
T Consensus       204 ~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~------~G~i~~vs~D  246 (829)
T KOG2280|consen  204 ESRVQLHALSWPNSSVVKISVSPNRRFLALYTE------TGKIWVVSID  246 (829)
T ss_pred             cccccccccCCCCceEEEEEEcCCcceEEEEec------CCcEEEEecc
Confidence            111111111111 23344999999999999988      7777776654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=88.37  E-value=8.3  Score=37.83  Aligned_cols=146  Identities=10%  Similarity=0.104  Sum_probs=65.7

Q ss_pred             EEecCCCcEEEEEe--cC---C---C-------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC--CCcEEEE-
Q 013871            5 LTCLRVGLIIQTFQ--KS---S---T-------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS--DEAVACR-   66 (434)
Q Consensus         5 l~fSP~g~~L~t~~--~~---~---~-------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~-   66 (434)
                      +.+-|.-+.++|.+  .+   .   .       .....|.+||+.+.+.++++...... .....++|..  +..+-.+ 
T Consensus       186 fw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g-~~pLEvRflH~P~~~~gFvg  264 (461)
T PF05694_consen  186 FWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG-QMPLEVRFLHDPDANYGFVG  264 (461)
T ss_dssp             EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE-EEEEEEEE-SSTT--EEEEE
T ss_pred             eEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC-CceEEEEecCCCCccceEEE
Confidence            45667777787744  10   0   0       12368999999999999988775421 1222566655  4444333 


Q ss_pred             -ecCCeE-EEEeCCCCC--Cceeeeee-------------------cCCeeEEEEeCCCCCeE--EEEecCCCCCCceEE
Q 013871           67 -MATNEI-QFFDTTDFP--KGILYRLR-------------------VPGVAAFEVSKAPGSHV--AVFVPESKGSPASVQ  121 (434)
Q Consensus        67 -~~~~~i-~v~~~~~~~--~~~~~~~~-------------------~~~v~~~~~sp~~~~~i--a~~~~~~~~~~~~v~  121 (434)
                       +...+| ++|...+..  ...+..+.                   ..-|++|.+|.| +.++  +.|      ..+.|+
T Consensus       265 ~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD-DrfLYvs~W------~~Gdvr  337 (461)
T PF05694_consen  265 CALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD-DRFLYVSNW------LHGDVR  337 (461)
T ss_dssp             EE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT-S-EEEEEET------TTTEEE
T ss_pred             EeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC-CCEEEEEcc------cCCcEE
Confidence             334444 455533321  11112221                   023688999998 5443  333      236899


Q ss_pred             EEEcCCCCCCCceeeeeecc------------------cceeEEEECCCCCeEEEEE
Q 013871          122 IYACGKDLQSQPLARRSFFR------------------CSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus       122 i~~~~~~~~~~~i~~~~~~~------------------~~~~~~~ws~~G~~l~~~~  160 (434)
                      .|++...  ..+...-+.+-                  ...-.+..|-||++|.+..
T Consensus       338 qYDISDP--~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  338 QYDISDP--FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEE-SST--TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEecCCC--CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9999764  22222221111                  1123466788999987754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=87.60  E-value=3.6  Score=25.40  Aligned_cols=33  Identities=12%  Similarity=0.060  Sum_probs=25.9

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec
Q 013871            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK   45 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~   45 (434)
                      |+|++|.+...    .+++|.++|+.+++.+.++...
T Consensus         1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEECC
Confidence            78898887662    4678999999999888877653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=87.57  E-value=2.3  Score=37.65  Aligned_cols=86  Identities=15%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             ccCCCeEEEEecccc-ee---EEeCCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC
Q 013871          215 GFMPASATIFNKKCR-PI---LELGSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP  289 (434)
Q Consensus       215 g~~~~~v~l~d~~~~-~~---~~~~~~~~~~-i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp  289 (434)
                      |..++.|++|+.... .+   .......+.+ |.---++.+.++++   .+|.|+.|+++-.+.+.....|.-      -
T Consensus        76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~h~~------~  146 (238)
T KOG2444|consen   76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQHNF------E  146 (238)
T ss_pred             ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec---cCCceeeeccccCceeeeeccccC------C
Confidence            777888888876411 11   1112222222 22223444666666   557999999998887776665542      3


Q ss_pred             CCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          290 DGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       290 dg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++.++++.++      |..+++|+.+
T Consensus       147 ~~e~~ivv~s------d~~i~~a~~S  166 (238)
T KOG2444|consen  147 SGEELIVVGS------DEFLKIADTS  166 (238)
T ss_pred             CcceeEEecC------CceEEeeccc
Confidence            4455555555      6666666543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.37  E-value=2.4  Score=44.84  Aligned_cols=69  Identities=20%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----------CCE--EEEE-e-------e-CC--CceEEEECCC---
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLGT-T-------R-AE--CSVTSEWSPD---  290 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----------~~~--~i~~-~-------~-~~--~~~~~~wspd---  290 (434)
                      ..|..|..||+|++|++.|..+    |.|..+-          .++  .... +       . .+  .+..+.|+|.   
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            3567899999999999998432    4443331          111  1111 1       0 11  3334999998   


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeec
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +.+|++-++      ||.+|+||+.
T Consensus       161 ~~~l~vLts------dn~lR~y~~~  179 (717)
T PF10168_consen  161 DSHLVVLTS------DNTLRLYDIS  179 (717)
T ss_pred             CCeEEEEec------CCEEEEEecC
Confidence            489999998      9999999995

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=87.35  E-value=14  Score=39.36  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=24.7

Q ss_pred             CcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCC
Q 013871          236 SGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       236 ~~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+..+.|+|.+   .+|++-..|   +.+++||+.+.
T Consensus       146 ~~~i~qv~WhP~s~~~~~l~vLtsd---n~lR~y~~~~~  181 (717)
T PF10168_consen  146 SLEIKQVRWHPWSESDSHLVVLTSD---NTLRLYDISDP  181 (717)
T ss_pred             CceEEEEEEcCCCCCCCeEEEEecC---CEEEEEecCCC
Confidence            4456789999974   677777744   49999998753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.91  E-value=28  Score=32.82  Aligned_cols=93  Identities=18%  Similarity=0.373  Sum_probs=49.0

Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ..+.++.+.-++||++++++..|+   -+.-||--.  .+.........+..+.|+||+...+++ .      .+.|+.=
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~---~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~------Gg~~~~s  212 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGN---FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-R------GGQIQFS  212 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSS---EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-T------TTEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECccc---EEEEecCCCccceEEccCccceehhceecCCCCEEEEe-C------CcEEEEc
Confidence            456788899999999999986554   444576432  344444444466679999999887765 4      6666666


Q ss_pred             ee--cCceeeeeec------ccceeeEEEcCCC
Q 013871          313 HH--NGSLFFKKMF------DKLFQAEWKPVSP  337 (434)
Q Consensus       313 ~~--~g~~~~~~~~------~~~~~~~w~p~~~  337 (434)
                      +.  ++....+...      -.+..++|+|...
T Consensus       213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~  245 (302)
T PF14870_consen  213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE  245 (302)
T ss_dssp             E-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred             cCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence            62  2222222111      2378889998643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=86.79  E-value=11  Score=28.23  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             CCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEEEEEEc
Q 013871          259 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l~tas~  299 (434)
                      ..|.+.-||..+++......+ .....++.|||+.+|+.+-+
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et   76 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET   76 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred             CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence            358899999999875444443 35667999999999999876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.70  E-value=0.089  Score=51.24  Aligned_cols=133  Identities=19%  Similarity=0.270  Sum_probs=92.1

Q ss_pred             EEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE-EEEe
Q 013871          200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTT  277 (434)
Q Consensus       200 ~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~-i~~~  277 (434)
                      ...|-|.+..+++  +.-+..+..||-.++.+... .++....++|.-+|..+++...  ..+-+++||+++... -...
T Consensus        39 ~~~w~~e~~nlav--aca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqqLE~  114 (615)
T KOG2247|consen   39 IHRWRPEGHNLAV--ACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQLES  114 (615)
T ss_pred             eeeEecCCCceeh--hhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHHHhc
Confidence            5778898888876  44455788899887776665 4566677899999987666543  347899999986421 1111


Q ss_pred             eC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc--ee-eeeecccceeeEEEcCCCCCCCC
Q 013871          278 RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~--~~-~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+ +.-..+.|++.+..++.+..      .+.+.|++..-.  .. .-.+..+.-|.+|.+.+.-++-+
T Consensus       115 gg~~s~sll~wsKg~~el~ig~~------~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  115 GGTSSKSLLAWSKGTPELVIGNN------AGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             cCcchHHHHhhccCCcccccccc------ccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            12 12223899999999999976      899999986332  22 22366788999999987665554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.48  E-value=4.7  Score=34.54  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=22.5

Q ss_pred             CceEEEECCCC------CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          281 CSVTSEWSPDG------RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       281 ~~~~~~wspdg------~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      .+..++|||-|      ..|++.+.      ++.+.||.-.+.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs------~~~l~l~~~~~~  123 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTS------NGRLSLYGPPGN  123 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcC------CCeEEEEecCCC
Confidence            44559999953      35666666      999999987654

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.25  E-value=0.11  Score=50.66  Aligned_cols=136  Identities=12%  Similarity=0.242  Sum_probs=86.7

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                      .....|-+.|..+++.+   .+ +...+|..          ..+....+...+..-+++|.-+|..++++. ...+.+.+
T Consensus        37 pi~~~w~~e~~nlavac---a~-tiv~~YD~----------agq~~le~n~tg~aldm~wDkegdvlavlA-ek~~piyl  101 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVAC---AN-TIVIYYDK----------AGQVILELNPTGKALDMAWDKEGDVLAVLA-EKTGPIYL  101 (615)
T ss_pred             cceeeEecCCCceehhh---hh-hHHHhhhh----------hcceecccCCchhHhhhhhccccchhhhhh-hcCCCeee
Confidence            34677888877765532   11 11122211          112222233356777899999999999874 44569999


Q ss_pred             EecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEE
Q 013871          224 FNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       224 ~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~ta  297 (434)
                      ||+..+-..++.   ...-.-+.||+-+..++.+.   ..|++.|++..+.+.+-....|  ..+.++|.+.++.+...
T Consensus       102 wd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  102 WDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             chhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            999765544442   22223378999999999885   7789999998766554444322  67779999987665543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=86.17  E-value=14  Score=35.38  Aligned_cols=99  Identities=11%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEEe------CCcCeeEEEECCC----CCeEEEEecC---C--C
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGFG---N--L  259 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~~------~~~~~~~i~~SP~----g~~l~~~~~~---~--~  259 (434)
                      -.+|+|.|||+.|+   ....++|++++..+..   +..+      .......++++|+    +.+.+.....   .  .
T Consensus         4 P~~~a~~pdG~l~v---~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    4 PRSMAFLPDGRLLV---AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             EEEEEEETTSCEEE---EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             ceEEEEeCCCcEEE---EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            36899999997766   3458899999854332   2222      3455678999994    4433333211   0  1


Q ss_pred             CCeEEEEEccCC-------E-EEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013871          260 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       260 ~g~i~iwd~~~~-------~-~i~~~~-----~~~~~~~~wspdg~~l~tas~  299 (434)
                      ...|.-|.....       + ++....     .|....+.|.|||..+++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~  133 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD  133 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence            113443444332       2 222222     345566999999966666554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.48  E-value=19  Score=39.50  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECCCCCeEEEEe
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~  255 (434)
                      .....+++|+|.|+++++  |...+++.=|--..+....+      ....+.+|.|--.-.++++-+
T Consensus       198 t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  198 TNSQTAVLWSPRGKQLFI--GRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccceeeEEeccccceeeE--ecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            456789999999999996  88888887776555443333      246788999987777777654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.26  E-value=8.8  Score=37.81  Aligned_cols=82  Identities=13%  Similarity=0.222  Sum_probs=56.0

Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC----CCCC--------------EEEEEE
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS----PDGR--------------YFMTAT  298 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws----pdg~--------------~l~tas  298 (434)
                      ..+.+|..+|+|++.++..   .-|.|.++|+.++..+...++..--.|.|-    +..+              .+...-
T Consensus       308 R~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI  384 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI  384 (415)
T ss_pred             ceEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence            4467899999999888864   458999999999988887777543344442    1111              233344


Q ss_pred             cCCceeeCCcEEEEee-cCceeeeeec
Q 013871          299 TAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      ..||   -+.|-||++ +|..+...+.
T Consensus       385 yapr---Rg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  385 YAPR---RGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             Eecc---CCeEEEEecCCCCEEEEEEe
Confidence            5555   688999998 6766665543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.87  E-value=24  Score=34.27  Aligned_cols=140  Identities=14%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEec-c--cc--eeEEe--CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          197 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g---------~~~~-~v~l~d~-~--~~--~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      ....++|.++|+.+++-..         ...+ +|.+++- .  +.  ....+  .....+.|++.++| +++ +..   
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~---   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATP---   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCC---
Confidence            3457899999987764210         1123 6777643 2  22  22333  23344779999999 444 331   


Q ss_pred             CCeEEEE-EccC-------CEEE-EEee------CCCceEEEECCCCCEEEEEEcC-------C------ceeeCCcEEE
Q 013871          260 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI  311 (434)
Q Consensus       260 ~g~i~iw-d~~~-------~~~i-~~~~------~~~~~~~~wspdg~~l~tas~~-------p------rl~~D~~i~i  311 (434)
                       ..|..+ |.+.       .+.+ ..+.      +|....+.|.|||...++-+..       |      .....+.|.-
T Consensus        90 -~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 -PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             -CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence             246545 5431       1222 2232      2334569999999877755531       0      0111244555


Q ss_pred             EeecCceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          312 FHHNGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++.+|..+...  -...-+.+.|+|.+...+.+
T Consensus       169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             EecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence            55566543332  23345788999877555544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=82.78  E-value=0.71  Score=46.64  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=45.6

Q ss_pred             eeeecC-CCcEEEEecCCeEEEEeC-CCCCCceeeeeecC-----CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           54 SIRFSS-DEAVACRMATNEIQFFDT-TDFPKGILYRLRVP-----GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        54 ~~~~S~-d~~~la~~~~~~i~v~~~-~~~~~~~~~~~~~~-----~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      .+...| ...|++...++.|-+||. .+.+.....-++.+     .+..++|+|.....+++...++    +.|++|++.
T Consensus       200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS----~tIrlydi~  275 (783)
T KOG1008|consen  200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS----ITIRLYDIC  275 (783)
T ss_pred             cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc----ceEEEeccc
Confidence            344566 678999889999999994 33332222222222     4888999998766677665544    477888765


Q ss_pred             C
Q 013871          127 K  127 (434)
Q Consensus       127 ~  127 (434)
                      .
T Consensus       276 ~  276 (783)
T KOG1008|consen  276 V  276 (783)
T ss_pred             c
Confidence            3

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=82.71  E-value=67  Score=33.75  Aligned_cols=56  Identities=13%  Similarity=0.082  Sum_probs=33.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      +..+.|||+|.+++..+... .....+.+.+.. | .+..+ .     ..+....|++++..++.
T Consensus        62 ~~~~~~spdg~~~~~~~~~~-~~~~~l~l~~~~-g-~~~~~-~-----~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          62 VSELRWSPDGSVLAFVSTDG-GRVAQLYLVDVG-G-LITKT-A-----FGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccccCCCCCEEEEEeccC-CCcceEEEEecC-C-ceeee-e-----cccccceeCCCCCeEEE
Confidence            45678999999999877221 112344454544 3 11111 1     33336789999998887

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=82.69  E-value=36  Score=30.59  Aligned_cols=130  Identities=12%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCC----------eEEEEecccceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPA----------SATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~----------~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      +...++-..+|+|++|+   |.|..          .++.|-...+.-.-+ .-+--|.++|+-+-+.+.....  ++-.|
T Consensus       108 knR~NDgkvdP~Gryy~---GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYG---GTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEV  182 (310)
T ss_pred             hcccccCccCCCCceee---eeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc--CceEE
Confidence            34556677789999876   55532          233332222111111 1234478999988886666542  45677


Q ss_pred             EEEE--ccCC-----EEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccc
Q 013871          264 AFWD--YVDG-----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKL  327 (434)
Q Consensus       264 ~iwd--~~~~-----~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~  327 (434)
                      .-||  ..+|     +.+..++..      ..-.++...+|..+++.-.      .++|...|. +|+++.+.  +.+.+
T Consensus       183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eiklPt~qi  256 (310)
T KOG4499|consen  183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKLPTPQI  256 (310)
T ss_pred             eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEcCCCce
Confidence            7787  4444     334333321      1112555667777666655      666666665 68877665  34567


Q ss_pred             eeeEEEcC
Q 013871          328 FQAEWKPV  335 (434)
Q Consensus       328 ~~~~w~p~  335 (434)
                      .+++|--.
T Consensus       257 tsccFgGk  264 (310)
T KOG4499|consen  257 TSCCFGGK  264 (310)
T ss_pred             EEEEecCC
Confidence            77777643

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=82.62  E-value=39  Score=30.97  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=36.3

Q ss_pred             CCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           60 DEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        60 d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      .++.|+.+.++-|.+|+...... ...-.....|..+...|.-+..++.       .++.+.+++++..
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~-~~~i~~~~~I~ql~vl~~~~~llvL-------sd~~l~~~~L~~l   66 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSK-PTRILKLSSITQLSVLPELNLLLVL-------SDGQLYVYDLDSL   66 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCcc-ceeEeecceEEEEEEecccCEEEEE-------cCCccEEEEchhh
Confidence            45666666655599999833222 2223333348888888864433332       1267888888764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.21  E-value=63  Score=32.39  Aligned_cols=61  Identities=11%  Similarity=0.141  Sum_probs=33.6

Q ss_pred             CCCeEEEEECcCC------CEEEEEEccC--------CCeEEEEeccc--------ceeEE-eC---CcCeeEEEECCCC
Q 013871          195 EGPVHDVQWSYSG------SEFAVVYGFM--------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKG  248 (434)
Q Consensus       195 ~~~i~~v~wspdg------~~~av~~g~~--------~~~v~l~d~~~--------~~~~~-~~---~~~~~~i~~SP~g  248 (434)
                      ++....|+++|+-      .+|.+.+...        ...|..|.+..        ..+.. +.   ...-..|.|.|||
T Consensus        78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG  157 (454)
T TIGR03606        78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDG  157 (454)
T ss_pred             CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCC
Confidence            5778999999874      3455544221        22454454321        11221 21   1223468999999


Q ss_pred             CeEEEEe
Q 013871          249 KFLCLAG  255 (434)
Q Consensus       249 ~~l~~~~  255 (434)
                      .++++.|
T Consensus       158 ~LYVs~G  164 (454)
T TIGR03606       158 KIYYTIG  164 (454)
T ss_pred             cEEEEEC
Confidence            8666554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=80.86  E-value=51  Score=31.16  Aligned_cols=67  Identities=7%  Similarity=0.063  Sum_probs=39.9

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEE--ecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~--d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..+.++...  ++++++  |+.-..+.++  +.....+..+    ....+.++.|-++++.++.+.   .+|++.++...
T Consensus       130 ~~i~sl~~~--~~~I~v--gD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~~  202 (321)
T PF03178_consen  130 FYITSLSVF--KNYILV--GDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRYN  202 (321)
T ss_dssp             SSEEEEEEE--TTEEEE--EESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE-
T ss_pred             EEEEEEecc--ccEEEE--EEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEEC
Confidence            355566554  455664  6655666665  5444433333    445577888887777777676   56899998765

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.69  E-value=34  Score=34.67  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=43.9

Q ss_pred             CCCeEEEEecccceeEEeCCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc-----eEEEECC
Q 013871          217 MPASATIFNKKCRPILELGSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS-----VTSEWSP  289 (434)
Q Consensus       217 ~~~~v~l~d~~~~~~~~~~~~~~~--~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~-----~~~~wsp  289 (434)
                      ......++|.++..+..+......  .+..-++|.+++..+     ..+..+|.. |+.+........     -.+..-|
T Consensus       126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T
T ss_pred             CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcCC-CCEEEeeecCCcccccccccEECC
Confidence            344778888888877666322222  277889999998765     478888875 555554444321     1288899


Q ss_pred             CCCEEEEEE
Q 013871          290 DGRYFMTAT  298 (434)
Q Consensus       290 dg~~l~tas  298 (434)
                      +|.+|+.+.
T Consensus       200 nGn~L~l~~  208 (477)
T PF05935_consen  200 NGNLLILAS  208 (477)
T ss_dssp             TS-EEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999888

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.21  E-value=53  Score=30.92  Aligned_cols=68  Identities=19%  Similarity=0.306  Sum_probs=48.7

Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-------ceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-------SVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-------~~~~~wspdg~~l~tas~~prl~~D~~i~  310 (434)
                      .+|+|..-++|.+|+++-.-   ..|.+.|.++++.+..+.+..       ...++|-.|-+++-....      ++.|.
T Consensus       145 HiNsV~~~~~G~yLiS~R~~---~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~------~~~Is  215 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNT---STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESND------DGTIS  215 (299)
T ss_pred             EeeeeeecCCccEEEEeccc---CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCC------CCEEE
Confidence            36889989999999887633   489999999999999887762       122555555555433333      77888


Q ss_pred             EEee
Q 013871          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      |+|=
T Consensus       216 lFDN  219 (299)
T PF14269_consen  216 LFDN  219 (299)
T ss_pred             EEcC
Confidence            8875

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=80.11  E-value=96  Score=33.82  Aligned_cols=109  Identities=10%  Similarity=0.192  Sum_probs=66.3

Q ss_pred             CeEEEEECcC-CCEEEEEEcc--------CCCeEEEEeccc-ceeEEeC----CcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871          197 PVHDVQWSYS-GSEFAVVYGF--------MPASATIFNKKC-RPILELG----SGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       197 ~i~~v~wspd-g~~~av~~g~--------~~~~v~l~d~~~-~~~~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~  262 (434)
                      .|.++.|..| +.+++|-++.        ..|.+.+|.... +.+...+    .+.+.++.- =+|++||.  .+   ..
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~--In---~~  849 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAG--IN---QS  849 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEe--cC---cE
Confidence            3455668877 6667664432        224677776533 3333222    344444332 14777654  33   48


Q ss_pred             EEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          263 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       263 i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      |++|+..+.+.+..-..+  .+..+...-.|..+++|..      -+.|.+-.|.+.
T Consensus       850 vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl------m~Sitll~y~~~  900 (1096)
T KOG1897|consen  850 VRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL------MRSITLLQYKGD  900 (1096)
T ss_pred             EEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec------cceEEEEEEecc
Confidence            999999888666554333  4455888888999999988      677777666443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=80.05  E-value=54  Score=30.91  Aligned_cols=129  Identities=18%  Similarity=0.279  Sum_probs=63.2

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE-cc
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD-YV  269 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd-~~  269 (434)
                      ..+.+.++.-++||++++|  +..-.-..-||--   -.+........+..+.|+|++.+.+++ .|   |.|++=| ..
T Consensus       143 ~~gs~~~~~r~~dG~~vav--s~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G---g~~~~s~~~~  216 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAV--SSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG---GQIQFSDDPD  216 (302)
T ss_dssp             ----EEEEEE-TTS-EEEE--ETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT---TEEEEEE-TT
T ss_pred             CcceeEeEEECCCCcEEEE--ECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC---cEEEEccCCC
Confidence            3578899999999998886  3322233445542   222223346778899999999987765 23   5788776 23


Q ss_pred             CCEEEEE------eeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeec-----ccceeeEEEcC
Q 013871          270 DGKQLGT------TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----DKLFQAEWKPV  335 (434)
Q Consensus       270 ~~~~i~~------~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~-----~~~~~~~w~p~  335 (434)
                      +.+....      ..+..+..++|.++++..++++.       +++..=.=.|+.-.+.+.     ..||.+.|.+.
T Consensus       217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-------G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-------GTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNP  286 (302)
T ss_dssp             EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-------T-EEEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred             CccccccccCCcccCceeeEEEEecCCCCEEEEeCC-------ccEEEeCCCCccceECccccCCCCceEEEEEcCC
Confidence            3332222      12235677999999888887764       333332223443333221     25777777644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	434
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.98
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.96
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
3jro_A	753	Fusion protein of protein transport protein SEC13	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2pm7_B	297	Protein transport protein SEC13, protein transport	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.85
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.84
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.84
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.84
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.8
3jro_A	753	Fusion protein of protein transport protein SEC13	99.79
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.77
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.77
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.72
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.65
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.64
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.58
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.5
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.38
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.33
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.32
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.31
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.3
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.3
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.28
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.27
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.25
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.24
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.15
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.14
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.14
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.12
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.06
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.02
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.0
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.0
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.97
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.89
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.88
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.88
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.87
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.85
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.79
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.76
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.75
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.74
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.73
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.68
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.67
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.52
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.11
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.06
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.03
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.94
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.9
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.82
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.74
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.72
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.71
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.62
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.6
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.57
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.55
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.55
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.54
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.5
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.45
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.43
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.38
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.37
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.33
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.29
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.27
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.25
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.2
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.16
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.1
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.09
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.03
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.98
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.55
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.49
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.47
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.39
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.35
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.29
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.28
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.27
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.27
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.21
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.2
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.19
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.76
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.69
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.33
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.1
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.93
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.92
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.14
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.94
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.61
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	93.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.61
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	92.53
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.96
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	89.28
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.07
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.05
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	83.9
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	81.0
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	80.93

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=260.97  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=211.7

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~   76 (434)
                      |++|+|+|+    +.+|+|++     .|+.|+|||+.+++....+.... |...+.+++|++++.++++++ |++|++||
T Consensus        35 V~~v~~~~~~~~~~~~l~tgs-----~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           35 IWSVAWGTNKKENSETVVTGS-----LDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             EEEEEEC-------CEEEEEE-----TTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             EEEEEEecCCCCCCCEEEEEc-----CCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            789999985    67999999     89999999998776533322221 446777999999999999885 68999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      +.+.........+...+..++|+|+ +..+++     ++..+.|++|++..   +........+...+..+.|+|+|+.|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~-----g~~dg~v~i~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPD-SQYLAT-----GTHVGKVNIFGVES---GKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTT-SSEEEE-----ECTTSEEEEEETTT---CSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCC-CCEEEE-----EcCCCcEEEEEcCC---CceeEEecCCCceEEEEEECCCCCEE
Confidence            9875433333344556888999999 455554     35568999999987   66777777777788999999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~  234 (434)
                      +...   .|...         .++++... .....+ .+..+|.+++|+|+++.|+  ++..|+.|++||++. ..+..+
T Consensus       180 asg~---~dg~i---------~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~--s~s~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          180 ASGA---IDGII---------NIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLV--TASDDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             EEEE---TTSCE---------EEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEE--EECTTSCEEEEETTTCCEEEEE
T ss_pred             EEEc---CCCeE---------EEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEE--EEcCCCeEEEEECCCcceeEEE
Confidence            6532   34333         33333333 222222 3478999999999999888  688899999999964 344444


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEE
Q 013871          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~  310 (434)
                        |...+.+++|+|+|++|++++   .+|.|+|||+.+++++..+.+|  .+..++|+|+|++|++++.      |+.|+
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~------d~~i~  315 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSS---SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD------DQEIH  315 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TCCEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC------CCeEE
Confidence              778899999999999999999   5679999999999999998776  5667999999999999999      99999


Q ss_pred             EEee
Q 013871          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      |||+
T Consensus       316 vwd~  319 (321)
T 3ow8_A          316 IYDC  319 (321)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-32  Score=261.65  Aligned_cols=271  Identities=10%  Similarity=0.122  Sum_probs=213.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||||++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ ++.|++|++...
T Consensus        58 v~~~~~s~d~~~l~s~s-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~  129 (340)
T 1got_B           58 IYAMHWGTDSRLLLSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTTEEEEEETTTCCEEEEEECSS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEe-----CCCcEEEEECCCCCcceEeecCC---ccEEEEEECCCCCEEEEEeCCCeEEEEECccC
Confidence            78999999999999999     89999999999999988887654   5666899999999999884 689999998764


Q ss_pred             CCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           81 PKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ...    .....|...|..+.|+|++ . ++.     .+.++.|++|++.+   ++.+.....|...+..+.|+|+|..+
T Consensus       130 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~-l~s-----~s~d~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l  199 (340)
T 1got_B          130 EGNVRVSRELAGHTGYLSCCRFLDDN-Q-IVT-----SSGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             SBSCEEEEEEECCSSCEEEEEEEETT-E-EEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             CCcceeEEEecCCCccEEEEEECCCC-c-EEE-----EECCCcEEEEECCC---CcEEEEEcCCCCceEEEEECCCCCEE
Confidence            321    1123345578899999873 3 332     24567899999988   77788888888899999999999875


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEeC
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG  235 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~~  235 (434)
                      +..   ..|.+.+.|         ++........-..+...|.+++|+|+++.|+  +|..|+.|++||++.. .+..+.
T Consensus       200 ~sg---~~d~~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~d~~v~iwd~~~~~~~~~~~  265 (340)
T 1got_B          200 VSG---ACDASAKLW---------DVREGMCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTYS  265 (340)
T ss_dssp             EEE---ETTSCEEEE---------ETTTCSEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEE---eCCCcEEEE---------ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEE--EEcCCCcEEEEECCCCcEEEEEc
Confidence            432   244444433         3222211111223578999999999999988  5788999999999743 444442


Q ss_pred             ----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          236 ----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       236 ----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                          ...+.+++|+|+|++|++|+   .+|.|++||+.+++.+..+.+|  .+..++|+|||++|++++.      |+.|
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~------D~~i  336 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL  336 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSCE
T ss_pred             cCCcccceEEEEECCCCCEEEEEC---CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC------CccE
Confidence                24689999999999999998   5679999999999888888877  5667999999999999999      9999


Q ss_pred             EEEe
Q 013871          310 KIFH  313 (434)
Q Consensus       310 ~iw~  313 (434)
                      +||+
T Consensus       337 ~iWd  340 (340)
T 1got_B          337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-33  Score=273.27  Aligned_cols=272  Identities=14%  Similarity=0.199  Sum_probs=218.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||++++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+|++++|++++ |++|++||+...
T Consensus       111 V~~~~~~p~~~~l~s~s-----~Dg~i~vwd~~~~~~~~~l~~h~---~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          111 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEeccC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            78999999999999999     89999999999999888887653   6777999999999999885 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...|.++.|+|++ ..++.     ++.++.|++|++.+   +..+.....+...+..+.|+++|..++.. 
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~-~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~g~~l~s~-  252 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNG-DHIVS-----ASRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC-  252 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSS-SEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred             ceeEEEcCCCCCEEEEEEeCCC-CEEEE-----EeCCCeEEEEECCC---CcEEEEEeCCCccEEEEEECCCCCEEEEE-
Confidence            5444445566789999999984 44443     35668999999988   77888888888889999999999976543 


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeee-cCCCCCeEEEEECcC--------------------CCEEEEEEccCCC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYS--------------------GSEFAVVYGFMPA  219 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-l~~~~~i~~v~wspd--------------------g~~~av~~g~~~~  219 (434)
                        ..|.+.+.|         ++... .+... ..+...|.+++|+|+                    |..|+  +|+.|+
T Consensus       253 --s~D~~v~vw---------d~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~--sgs~D~  318 (410)
T 1vyh_C          253 --SNDQTVRVW---------VVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDK  318 (410)
T ss_dssp             --ETTSCEEEE---------ETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTS
T ss_pred             --cCCCeEEEE---------ECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEE--EEeCCC
Confidence              245444433         22222 22222 235789999999997                    44555  688899


Q ss_pred             eEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871          220 SATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       220 ~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      .|++||++. ..+..+  |...+++++|+|+|++|++++   .+|.|+|||+.+++++..+.+|  .++.++|+|++.+|
T Consensus       319 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l  395 (410)
T 1vyh_C          319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV  395 (410)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCE
T ss_pred             eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEE
Confidence            999999964 445554  788899999999999999999   5679999999999888888776  56779999999999


Q ss_pred             EEEEcCCceeeCCcEEEEee
Q 013871          295 MTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~  314 (434)
                      ++++.      |+.|+||++
T Consensus       396 ~sgs~------D~~i~vW~~  409 (410)
T 1vyh_C          396 VTGSV------DQTVKVWEC  409 (410)
T ss_dssp             EEEET------TSEEEEEC-
T ss_pred             EEEeC------CCcEEEEeC
Confidence            99999      999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.4e-33  Score=271.01  Aligned_cols=285  Identities=13%  Similarity=0.125  Sum_probs=202.8

Q ss_pred             cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEee-cCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQ-KNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~-~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      |.+|+|||||++|++++.... -.|+.|++|+..++.....+.. ...+...+.+++|+||+++++.+.+++|+|||+..
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~  124 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILE  124 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC----
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccc
Confidence            789999999999999984322 2378899999887764322111 01123667799999999999988899999999876


Q ss_pred             CCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           80 FPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        80 ~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........    .|...|.+++|+|+ +..++.     .+.++.|++|++.+   ++.+.....+...+..+.|++++..
T Consensus       125 ~~~~~~~~~~~~~h~~~V~~v~~spd-g~~l~s-----gs~dg~v~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~~~~  195 (357)
T 4g56_B          125 KESLLVNKFAKYEHDDIVKTLSVFSD-GTQAVS-----GGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDT  195 (357)
T ss_dssp             ----CCCCEEECCCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTCSS
T ss_pred             cceeEEEeeccCCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCCCCCEEEEEEccCCCc
Confidence            54322222    34557999999998 455553     34567899999988   7888888888889999999999986


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcce-eeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL  232 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~  232 (434)
                      +++.+.  .|.+.+         ++++..... ..+.+ .....+.+++|+|++..+++ +|..++.|++||++. ..+.
T Consensus       196 ~~~s~~--~dg~v~---------~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la-~g~~d~~i~~wd~~~~~~~~  263 (357)
T 4g56_B          196 IFLSCG--EDGRIL---------LWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPDSAQ  263 (357)
T ss_dssp             CEEEEE--TTSCEE---------ECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE-EEESSSCEEEEESSCGGGCE
T ss_pred             eeeeec--cCCceE---------EEECCCCceeeeeeeccccccccchhhhhcccceEE-EeecccceeEEECCCCcEeE
Confidence            554433  333333         333322211 11121 23678999999998655443 577899999999963 4444


Q ss_pred             Ee--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC-CCCEEEEEEcCCceeeCC
Q 013871          233 EL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP-DGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       233 ~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp-dg~~l~tas~~prl~~D~  307 (434)
                      .+  +...+++++|+|+| ++|++++   .||+|+|||+++++.+..+.+. .+..++||| |+.+|++++.      |+
T Consensus       264 ~~~~~~~~v~~l~~sp~~~~~lasgs---~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~------Dg  334 (357)
T 4g56_B          264 TSAVHSQNITGLAYSYHSSPFLASIS---EDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW------DH  334 (357)
T ss_dssp             EECCCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET------TS
T ss_pred             EEeccceeEEEEEEcCCCCCEEEEEe---CCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC------CC
Confidence            44  78899999999998 5788888   5679999999999988776544 566699999 8999999999      99


Q ss_pred             cEEEEeecC
Q 013871          308 GIKIFHHNG  316 (434)
Q Consensus       308 ~i~iw~~~g  316 (434)
                      .|+||++..
T Consensus       335 ~v~iW~~~~  343 (357)
T 4g56_B          335 KVLHHHLPS  343 (357)
T ss_dssp             CEEEEECC-
T ss_pred             eEEEEECCC
Confidence            999999843

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-31  Score=255.31  Aligned_cols=272  Identities=14%  Similarity=0.162  Sum_probs=211.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.+++....+..+.   ..+.+++|+||+.++++++ ++.+++|++...
T Consensus        67 V~~~~~s~d~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~  138 (354)
T 2pbi_B           67 VLCMDWCKDKRRIVSSS-----QDGKVIVWDSFTTNKEHAVTMPC---TWVMACAYAPSGCAIACGGLDNKCSVYPLTFD  138 (354)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSS---SCCCEEEECTTSSEEEEESTTSEEEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCcceEEecCC---CCEEEEEECCCCCEEEEeeCCCCEEEEEEecc
Confidence            78999999999999999     89999999999999888876653   5667999999999999985 679999998542


Q ss_pred             C------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--
Q 013871           81 P------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--  152 (434)
Q Consensus        81 ~------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--  152 (434)
                      .      .......|...|..+.|+|+ +..++.     .+.++.|++|++.+   ++.+.....|...+..+.|+|+  
T Consensus       139 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~  209 (354)
T 2pbi_B          139 KNENMAAKKKSVAMHTNYLSACSFTNS-DMQILT-----ASGDGTCALWDVES---GQLLQSFHGHGADVLCLDLAPSET  209 (354)
T ss_dssp             TTCCSGGGCEEEEECSSCEEEEEECSS-SSEEEE-----EETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECCCSS
T ss_pred             ccccccccceeeeccCCcEEEEEEeCC-CCEEEE-----EeCCCcEEEEeCCC---CeEEEEEcCCCCCeEEEEEEeCCC
Confidence            1      11233456678999999998 444443     24568999999988   7788888888888888888874  


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~  231 (434)
                      |..++..   ..|.+.+.|         ++...........+...|.+++|+|++..|+  ++..|+.+++||++.. .+
T Consensus       210 g~~l~sg---s~Dg~v~~w---------d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~v~lwd~~~~~~~  275 (354)
T 2pbi_B          210 GNTFVSG---GCDKKAMVW---------DMRSGQCVQAFETHESDVNSVRYYPSGDAFA--SGSDDATCRLYDLRADREV  275 (354)
T ss_dssp             CCEEEEE---ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEE
T ss_pred             CCEEEEE---eCCCeEEEE---------ECCCCcEEEEecCCCCCeEEEEEeCCCCEEE--EEeCCCeEEEEECCCCcEE
Confidence            5654432   244444433         3322211112223578999999999999988  5778999999999754 33


Q ss_pred             EEeC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceee
Q 013871          232 LELG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       232 ~~~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~  305 (434)
                      ..+.    ...+.++.|+|+|++|++++   .+|.|++||+.+++.+..+.+|  .+..++|+|||++|++++.      
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~---~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~------  346 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAGY---NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW------  346 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET------
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEEE---CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC------
Confidence            3332    24678999999999999998   5679999999999888888776  5667999999999999999      


Q ss_pred             CCcEEEEe
Q 013871          306 DNGIKIFH  313 (434)
Q Consensus       306 D~~i~iw~  313 (434)
                      |+.|+||+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.4e-32  Score=266.15  Aligned_cols=278  Identities=13%  Similarity=0.146  Sum_probs=210.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|++|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ |+.|++|++...
T Consensus        69 V~~~~~sp~~~~l~s~s-----~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~  140 (380)
T 3iz6_a           69 VYSLDWTPEKNWIVSAS-----QDGRLIVWNALTSQKTHAIKLHC---PWVMECAFAPNGQSVACGGLDSACSIFNLSSQ  140 (380)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSEEEEEETTTTEEEEEEECCC---TTCCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCccceEEecCC---CCEEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence            78999999999999999     89999999999999988887654   5667899999999999985 679999998642


Q ss_pred             C-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-----eecccceeEEE
Q 013871           81 P-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-----SFFRCSTVQLN  148 (434)
Q Consensus        81 ~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-----~~~~~~~~~~~  148 (434)
                      .       .......|...|..+.|+|+.+..++.     ++.++.|++|++.+   ++.+...     ..|...+..+.
T Consensus       141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D~~i~~wd~~~---~~~~~~~~~~~~~~h~~~v~~~~  212 (380)
T 3iz6_a          141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGDQTCVLWDVTT---GQRISIFGSEFPSGHTADVLSLS  212 (380)
T ss_dssp             SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTTSCEEEECTTT---CCEEEEECCCSSSSCCSCEEEEE
T ss_pred             ccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCCCcEEEEEcCC---CcEEEEeecccCCCCccCeEEEE
Confidence            1       112233455568888999986555553     35678999999987   5665544     45677888999


Q ss_pred             ECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc
Q 013871          149 WNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       149 ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~  227 (434)
                      |++ ++..++.   ...|.+.+.       |.+...+. .......+.+.|.+++|+|+|+.|+  +|+.|+.|++||++
T Consensus       213 ~~~~~~~~l~s---gs~D~~v~~-------wd~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          213 INSLNANMFIS---GSCDTTVRL-------WDLRITSR-AVRTYHGHEGDINSVKFFPDGQRFG--TGSDDGTCRLFDMR  279 (380)
T ss_dssp             ECSSSCCEEEE---EETTSCEEE-------EETTTTCC-CCEEECCCSSCCCEEEECTTSSEEE--EECSSSCEEEEETT
T ss_pred             eecCCCCEEEE---EECCCeEEE-------EECCCCCc-ceEEECCcCCCeEEEEEecCCCeEE--EEcCCCeEEEEECC
Confidence            987 5555432   224544443       33221111 1122234578999999999999988  68889999999997


Q ss_pred             cc-eeEEeC---------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----eCC--CceEEEECCCC
Q 013871          228 CR-PILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----RAE--CSVTSEWSPDG  291 (434)
Q Consensus       228 ~~-~~~~~~---------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----~~~--~~~~~~wspdg  291 (434)
                      .. .+..+.         ...+++++|+|+|++|++|+   .+|.|++||+.+++.+..+    .+|  .+..++|+|||
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY---SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC---TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEE---CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCC
Confidence            43 343331         12478999999999999988   5689999999988877766    344  56779999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          292 RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       292 ~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ++|++++.      |+.|+||++.+.
T Consensus       357 ~~l~sgs~------D~~i~iW~~~~~  376 (380)
T 3iz6_a          357 SALCTGSW------DKNLKIWAFSGH  376 (380)
T ss_dssp             SEEEEECT------TSCEEEEECCSS
T ss_pred             CEEEEeeC------CCCEEEEecCCC
Confidence            99999999      999999999874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-31  Score=256.00  Aligned_cols=283  Identities=12%  Similarity=0.127  Sum_probs=205.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.++..+........|...+.+++|+||+++|++++ |++|++|+....
T Consensus        19 v~~l~~sp~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~   93 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCG-----GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD   93 (345)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC
T ss_pred             EEEEEECCCCCEEEEEc-----CCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC
Confidence            67999999999999999     899999999988865443332223557788999999999999985 679999998764


Q ss_pred             CCc--eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           81 PKG--ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~--~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  .....|...|.+++|+|+ +..++.     .+.++.|++|++........+.....+...+..+.|+|+|..|+.
T Consensus        94 ~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s  167 (345)
T 3fm0_A           94 DFECVTTLEGHENEVKSVAWAPS-GNLLAT-----CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS  167 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred             CeEEEEEccCCCCCceEEEEeCC-CCEEEE-----EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence            321  223345667999999998 455553     345678999999763212334555667788899999999997654


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---------
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---------  228 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---------  228 (434)
                      .   ..|.+.+.|       .+.. +...+...+ .+.+.|.+++|+|+|+.|+  +++.|+.|++||...         
T Consensus       168 ~---s~d~~i~~w-------~~~~-~~~~~~~~~~~h~~~v~~l~~sp~g~~l~--s~s~D~~v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          168 A---SYDDTVKLY-------REEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA--SCSDDRTVRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             E---ETTSCEEEE-------EEET-TEEEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEEECTTCTTCCCC
T ss_pred             E---eCCCcEEEE-------EecC-CCEEEEEEecCCCCceEEEEECCCCCEEE--EEeCCCeEEEeccccCCCCcccee
Confidence            3   245554433       2221 111111222 3578999999999999988  578899999998621         


Q ss_pred             -------ceeEE---eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------EE-EEeeCC--CceEEEE
Q 013871          229 -------RPILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------QL-GTTRAE--CSVTSEW  287 (434)
Q Consensus       229 -------~~~~~---~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--------~i-~~~~~~--~~~~~~w  287 (434)
                             ..+..   +|...+.+++|+|++.+|++++   .++.|++||.....        .. ....+|  .+..++|
T Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~  311 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC---GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW  311 (345)
T ss_dssp             C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE---TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred             eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe---CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence                   11222   2677899999999999999998   55699999987531        11 222344  5777999


Q ss_pred             CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013871          288 SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       288 spdg~-~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +|++. +|++++.      |+.|+||++...
T Consensus       312 ~p~~~~~laS~s~------Dg~v~~W~~~~~  336 (345)
T 3fm0_A          312 NPKEPGLLASCSD------DGEVAFWKYQRP  336 (345)
T ss_dssp             CSSSTTEEEEEET------TSCEEEEEECC-
T ss_pred             eCCCceEEEEcCC------CCcEEEEEecCC
Confidence            99984 8999999      999999999654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8e-32  Score=258.97  Aligned_cols=274  Identities=11%  Similarity=0.119  Sum_probs=196.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc-------CC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT-------ET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~-------~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~   69 (434)
                      |.+++|||||++|++.+      |..+++||.       ..     +.....+..    ...+.+++|++|+.+++.+.+
T Consensus        33 v~~~~fs~dG~~l~~~s------d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~l~~~s~d  102 (344)
T 4gqb_B           33 LEAARYRSDGALLLGAS------SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQT----EAGVADLTWVGERGILVASDS  102 (344)
T ss_dssp             EEEEEECTTSCEEEEEE------CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEE----SSCEEEEEEETTTEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEe------CCceEEeeceeeeeccccccCCcceeeeeecc----CCCEEEEEEeCCCeEEEEECC
Confidence            67899999999999877      344555542       11     111112221    255779999999877776678


Q ss_pred             CeEEEEeCCCCCCceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           70 NEIQFFDTTDFPKGILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ++|+|||+..........    .|...|.+++|+|+ +.+++.     ++.++.|++|++.+   ++.+.....|...+.
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd-g~~l~s-----gs~d~~i~iwd~~~---~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS-GTQAVS-----GSKDICIKVWDLAQ---QVVLSSYRAHAAQVT  173 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEE
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC-CCEEEE-----EeCCCeEEEEECCC---CcEEEEEcCcCCceE
Confidence            999999998765433322    34567999999998 555553     35567899999988   788888888999999


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec---CCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l---~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      .+.|++++..+++.++  .|.+.+.|         ++... .....+   .+...+.+++|+|++..+++ +|..|+.|+
T Consensus       174 ~~~~~~~~~~~l~s~s--~D~~v~iw---------d~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-sg~~dg~v~  240 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCS--EDNRILLW---------DTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFV-FGDENGTVS  240 (344)
T ss_dssp             EEEECSSCTTEEEEEE--TTSCEEEE---------ETTSS-SCEEECC----CCCEEEEEECSSCTTEEE-EEETTSEEE
T ss_pred             EEEecCCCCCceeeec--cccccccc---------ccccc-ceeeeeecceeeccceeeeecCCCCcceE-EeccCCcEE
Confidence            9999999987655433  44444433         22222 111112   12457899999997655443 588899999


Q ss_pred             EEecc-cceeEEe--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE-EE
Q 013871          223 IFNKK-CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY-FM  295 (434)
Q Consensus       223 l~d~~-~~~~~~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~-l~  295 (434)
                      +||++ .+.+..+  |...+++++|||+| ++|++++   .||.|+|||+.+++++.. .+|  .+..++|||+|+. |+
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs---~D~~i~vwd~~~~~~~~~-~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS---EDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE---TTSCEEEECTTCCEEEEE-CCCSSCEEEEEECSSSTTEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe---CCCeEEEEECCCCcEEEE-cCCCCCEEEEEEeCCCCeEEE
Confidence            99996 4445544  78999999999998 5788888   567999999999987654 454  5667999999975 56


Q ss_pred             EEEcCCceeeCCcEEEEeecCc
Q 013871          296 TATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +++.      |+.|++|++..+
T Consensus       317 s~s~------D~~v~~w~v~~~  332 (344)
T 4gqb_B          317 TVGW------DHQVVHHVVPTE  332 (344)
T ss_dssp             EEET------TSCEEEEECCC-
T ss_pred             EEcC------CCeEEEEECCCC
Confidence            7888      999999998654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.5e-31  Score=269.18  Aligned_cols=297  Identities=16%  Similarity=0.234  Sum_probs=234.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|+|+|++|++.+     .|+.|++||. +++.+..+..+.   ..+.+++|+||+++++++. ++.|++|+....
T Consensus       265 v~~v~~~~d~~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~  335 (577)
T 2ymu_A          265 VNGVAFRPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ  335 (577)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEET-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCEEEEEeC-CCcEEEEEecCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence            67899999999999998     8899999995 567777776543   5666899999999999885 679999998653


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      . ......+...+.+++++|+ +..+++.     ..++.+++|+..    ++.+.....+...+..+.|+|+|+.|+...
T Consensus       336 ~-~~~~~~~~~~v~~~~~s~~-g~~l~~~-----~~dg~v~~~~~~----~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~  404 (577)
T 2ymu_A          336 H-LQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRN----GQLLQTLTGHSSSVRGVAFSPDGQTIASAS  404 (577)
T ss_dssp             E-EEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSEEEEEETT----CCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             e-eEEEeCCCCCEEEEEECCC-CCEEEEE-----eCCCEEEEEcCC----CCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            2 2333445567999999998 4555542     345789999963    566777788888899999999999876532


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~  238 (434)
                         .|...         .+++..+. .......+...|.+++|+||++.++  ++..++.+.+||..++.+..+  |...
T Consensus       405 ---~d~~v---------~~~~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~--~~~~d~~v~~w~~~~~~~~~~~~~~~~  469 (577)
T 2ymu_A          405 ---DDKTV---------KLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS  469 (577)
T ss_dssp             ---TTSEE---------EEECTTCC-EEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTSCEEEEEECCSSC
T ss_pred             ---CCCEE---------EEEeCCCC-EEEEecCCCCCeEEEEECCCCCEEE--EEcCCCEEEEEECCCCEEEEEcCCCCC
Confidence               33333         33333332 1222233578999999999999988  467789999999987776665  7889


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +++++|+|+|++|++++   .++.|+|||. +++++..+.+|  .+..++|||||++|++++.      |+.|+|||++|
T Consensus       470 v~~~~~spd~~~las~~---~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~v~lwd~~~  539 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASAS---DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG  539 (577)
T ss_dssp             EEEEEECTTSCEEEEEE---TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET------TSEEEEECTTS
T ss_pred             EEEEEEcCCCCEEEEEe---CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC------cCEEEEEeCCC
Confidence            99999999999999998   5679999995 57778888776  5667999999999999999      99999999999


Q ss_pred             ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871          317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++...  +...+..+.|.|++..|++..
T Consensus       540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~  568 (577)
T 2ymu_A          540 QLLQTLTGHSSSVWGVAFSPDGQTIASAS  568 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            887654  567899999999998887653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.4e-31  Score=247.65  Aligned_cols=276  Identities=13%  Similarity=0.094  Sum_probs=210.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++.++.+..+.   ..+.+++|++|+++|++++ |++|++||+...
T Consensus        16 V~~~~fsp~~~~l~s~~-----~dg~v~lWd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~   87 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTL-----YSGRVELWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (304)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEc-----CCCcEEEEECCCCceeEEeeccC---CcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            78999999999999999     89999999999999988887654   5677999999999999985 679999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC-CCeEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~-G~~l~~~  159 (434)
                      ........|...|.+++|+|+ +.+++.     ++.++.|++|++.+.  .........|...+.++.|+|+ +..++. 
T Consensus        88 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----gs~D~~v~lWd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-  158 (304)
T 2ynn_A           88 EKVVDFEAHPDYIRSIAVHPT-KPYVLS-----GSDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFAS-  158 (304)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEEGGGT--TEEEEEECCCCSCEEEEEECTTCTTEEEE-
T ss_pred             cEEEEEeCCCCcEEEEEEcCC-CCEEEE-----ECCCCeEEEEECCCC--cchhhhhcccCCcEEEEEECCCCCCEEEE-
Confidence            654555567778999999999 455553     356789999999762  2344556677888999999995 555433 


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe--
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--  234 (434)
                        ...|.+.+.       |.+..... ...+...+...+..++|+|  ++..++  ++..|+.|++||++. ..+..+  
T Consensus       159 --gs~D~~v~i-------wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~s~D~~i~iWd~~~~~~~~~~~~  226 (304)
T 2ynn_A          159 --GCLDRTVKV-------WSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLEG  226 (304)
T ss_dssp             --EETTSEEEE-------EETTCSSC-SEEEECCCTTCEEEEEECCSTTCCEEE--EEETTSEEEEEETTTTEEEEEEEC
T ss_pred             --EeCCCeEEE-------EECCCCCc-cceeccCCcCcEEEEEEEEcCCCCEEE--EEcCCCeEEEEeCCCCccceeeCC
Confidence              224444443       32211111 1222233457899999987  566666  688899999999974 344444  


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC--EEEEEEcCCceeeCCcEE
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR--YFMTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~--~l~tas~~prl~~D~~i~  310 (434)
                      |...+++++|+|++++|++++   .+|.|+|||..+++.+..+..+  .+..++|+|+|.  +++++ .      |+++.
T Consensus       227 h~~~v~~~~~~p~~~~l~s~s---~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg-~------~~g~~  296 (304)
T 2ynn_A          227 HMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-F------DNGFT  296 (304)
T ss_dssp             CSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEE-E------TTEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEc---CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEe-c------CCceE
Confidence            788999999999999999999   6679999999999999888775  566799999986  35554 4      88999


Q ss_pred             EEeecC
Q 013871          311 IFHHNG  316 (434)
Q Consensus       311 iw~~~g  316 (434)
                      +|++..
T Consensus       297 ~~~~~~  302 (304)
T 2ynn_A          297 VLSLGN  302 (304)
T ss_dssp             EEECC-
T ss_pred             EEEecc
Confidence            998754

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.1e-31  Score=271.65  Aligned_cols=305  Identities=13%  Similarity=0.112  Sum_probs=223.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v   74 (434)
                      |++++|||||++|++++     .|++|+|||+.+++  ....+..+   ...+.+++|+||+++|+++++     +.|++
T Consensus        62 v~~~~~spdg~~lasg~-----~d~~v~lWd~~~~~~~~~~~~~~~---~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGD-----VHGNVRIWDTTQTTHILKTTIPVF---SGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEESSSTTCCEEEEEECS---SSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             eEEEEECCCCcEEEEEe-----CCCCEEEeECCCCcceeeEeeccc---CCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            78999999999999999     89999999997654  34455443   366779999999999998754     26888


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||...  .......|...|.+++|+|++...++.     .+.++.|++|+...   .+.+.....|...+.++.|+|+|+
T Consensus       134 wd~~~--~~~~l~gh~~~v~~v~f~p~~~~~l~s-----~s~D~~v~lwd~~~---~~~~~~l~~H~~~V~~v~fspdg~  203 (611)
T 1nr0_A          134 FDTGT--SNGNLTGQARAMNSVDFKPSRPFRIIS-----GSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGS  203 (611)
T ss_dssp             TTTCC--BCBCCCCCSSCEEEEEECSSSSCEEEE-----EETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSS
T ss_pred             eeCCC--CcceecCCCCCceEEEECCCCCeEEEE-----EeCCCeEEEEECCC---CeEeeeeccccCceEEEEECCCCC
Confidence            88543  223345567789999999985545553     35667999999876   666777778888999999999999


Q ss_pred             eEEEEEEecccccCceeeccee--EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-ee
Q 013871          155 GLLAVAQSDVDKTNQSYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PI  231 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~  231 (434)
                      .|+.   ...|.+.+.|.....  +..+.  ..  ......+.+.|.+++|+|+|+.|+  ++..|+.|++||++.. .+
T Consensus       204 ~las---~s~D~~i~lwd~~~g~~~~~~~--~~--~~~~~~h~~~V~~v~~spdg~~l~--s~s~D~~v~lWd~~~~~~~  274 (611)
T 1nr0_A          204 LFAS---TGGDGTIVLYNGVDGTKTGVFE--DD--SLKNVAHSGSVFGLTWSPDGTKIA--SASADKTIKIWNVATLKVE  274 (611)
T ss_dssp             EEEE---EETTSCEEEEETTTCCEEEECB--CT--TSSSCSSSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEE
T ss_pred             EEEE---EECCCcEEEEECCCCcEeeeec--cc--cccccccCCCEEEEEECCCCCEEE--EEeCCCeEEEEeCCCCcee
Confidence            7543   335666655432211  00000  00  000114678999999999999998  6778999999998632 11


Q ss_pred             E-------------------------------------------E--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          232 L-------------------------------------------E--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       232 ~-------------------------------------------~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .                                           .  -|...+++++|||+|++|++++   .+|.|++|
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---~D~~v~~W  351 (611)
T 1nr0_A          275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---AEGHINSW  351 (611)
T ss_dssp             EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred             eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEE
Confidence            1                                           1  2567899999999999999999   56799999


Q ss_pred             EccCCEEEEEee--------------------------------------------------------------------
Q 013871          267 DYVDGKQLGTTR--------------------------------------------------------------------  278 (434)
Q Consensus       267 d~~~~~~i~~~~--------------------------------------------------------------------  278 (434)
                      |+.+++....+.                                                                    
T Consensus       352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~  431 (611)
T 1nr0_A          352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY  431 (611)
T ss_dssp             ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred             ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence            988664432210                                                                    


Q ss_pred             ----------------CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee---e-eeecccceeeEEEcCCCC
Q 013871          279 ----------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---F-KKMFDKLFQAEWKPVSPD  338 (434)
Q Consensus       279 ----------------~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~---~-~~~~~~~~~~~w~p~~~~  338 (434)
                                      ...+..++|||||++|++++.      |+.|+||++.+..+   . ..+...+..++|+|++..
T Consensus       432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~------D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~  505 (611)
T 1nr0_A          432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  505 (611)
T ss_dssp             SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCC------CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCE
Confidence                            012345899999999999999      99999999977533   1 234567999999999988


Q ss_pred             CCCC
Q 013871          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      ++..
T Consensus       506 las~  509 (611)
T 1nr0_A          506 LVAT  509 (611)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-30  Score=269.95  Aligned_cols=296  Identities=13%  Similarity=0.076  Sum_probs=220.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+++|||||++|++.+      ++.|+||++.+++.+..+.++.   ..+.+++|||||++||++. |++|+|||+...
T Consensus        21 ~~~~~~spdg~~l~~~~------~~~v~l~~~~~~~~~~~~~~h~---~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~   91 (611)
T 1nr0_A           21 AVVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEHS---HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT   91 (611)
T ss_dssp             CCCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred             eeEEeeCCCCCEEEeCC------CCEEEEecCCCcccCeEecCCC---CceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence            46789999999999977      4689999999988888887654   6677999999999999985 679999998653


Q ss_pred             CCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           81 PKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....  ....+...|.+++|+|+ +..++.... .....+.|++|+.     +..+.....|...+..+.|+|++...++
T Consensus        92 ~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~-~~~~~~~v~~wd~-----~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           92 THILKTTIPVFSGPVKDISWDSE-SKRIAAVGE-GRERFGHVFLFDT-----GTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTT-SCEEEEEEC-CSSCSEEEEETTT-----CCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             cceeeEeecccCCceEEEEECCC-CCEEEEEEC-CCCceeEEEEeeC-----CCCcceecCCCCCceEEEECCCCCeEEE
Confidence            3222  23345567999999999 455544321 1223457888874     4556667788889999999999986444


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--  234 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--  234 (434)
                      .  ...|.+.+.|....         . .....+ .+.+.|.+++|+|||+.|+  ++..|+.|++||+. +..+..+  
T Consensus       165 s--~s~D~~v~lwd~~~---------~-~~~~~l~~H~~~V~~v~fspdg~~la--s~s~D~~i~lwd~~~g~~~~~~~~  230 (611)
T 1nr0_A          165 S--GSDDNTVAIFEGPP---------F-KFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFED  230 (611)
T ss_dssp             E--EETTSCEEEEETTT---------B-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBC
T ss_pred             E--EeCCCeEEEEECCC---------C-eEeeeeccccCceEEEEECCCCCEEE--EEECCCcEEEEECCCCcEeeeecc
Confidence            3  33566665554322         1 111222 3578999999999999988  67889999999985 3444333  


Q ss_pred             -------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe------------------------------
Q 013871          235 -------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT------------------------------  277 (434)
Q Consensus       235 -------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~------------------------------  277 (434)
                             |.+.+.+++|+|+|++|++++   .|++|+|||+.+++++..+                              
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~  307 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN  307 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence                   678899999999999999999   5579999999988765433                              


Q ss_pred             -------------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeee---eecccceeeEEEcCC
Q 013871          278 -------------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK---KMFDKLFQAEWKPVS  336 (434)
Q Consensus       278 -------------~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~---~~~~~~~~~~w~p~~  336 (434)
                                   .+|  .+..++|+|||++|++++.      |+.|++||+... +...   .+...+..+.|.|..
T Consensus       308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~------D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          308 FVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA------EGHINSWDISTGISNRVFPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred             EEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence                         233  4566999999999999999      999999999644 3222   244567888888654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-29  Score=243.88  Aligned_cols=286  Identities=17%  Similarity=0.223  Sum_probs=215.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|+++. ++.|++||+...
T Consensus        35 v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  106 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG  106 (369)
T ss_dssp             EEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             EEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999998     88999999999999998887643   6677999999999999884 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC--------Cceeeeeeccc--ceeEEEEC
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS--------QPLARRSFFRC--STVQLNWN  150 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~--------~~i~~~~~~~~--~~~~~~ws  150 (434)
                      ....... +...+..+.|+|+ +..+++...+....++.|.+|++......        ..+.....+..  ....+.|+
T Consensus       107 ~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          107 QCVATWK-SPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             CEEEEEE-CSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             cEEEEee-cCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            5433333 4557999999998 55555544333345589999998763211        12233333333  77899999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-  228 (434)
                      |+|+.+++..   .|.         .++.+++.........+ .+.++|.+++|+|+++.|+  ++..++.|.+||++. 
T Consensus       185 ~~~~~l~~~~---~dg---------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          185 TKGKYIIAGH---KDG---------KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFI--TSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             GGGCEEEEEE---TTS---------EEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTC
T ss_pred             CCCCEEEEEc---CCC---------EEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEE--EecCCceEEEEECCCC
Confidence            9999876532   222         23444444322222222 2478999999999999988  467789999999974 


Q ss_pred             ceeEEe-CCcCeeEEEECCCCCeEEEEecCCC-----------CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE
Q 013871          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNL-----------PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~-----------~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ..+..+ +...+..+.|+|+|+++++++.++.           ...+.+||..+++.+..+.+|  .+..++|+|||++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  330 (369)
T 3zwl_B          251 QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSY  330 (369)
T ss_dssp             CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEE
Confidence            444444 6788999999999999999884320           117999999999998888876  56669999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCc
Q 013871          295 MTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ++++.      |+.|+||++...
T Consensus       331 ~s~~~------dg~v~iw~~~~~  347 (369)
T 3zwl_B          331 ASGGE------DGFIRLHHFEKS  347 (369)
T ss_dssp             EEEET------TSEEEEEEECHH
T ss_pred             EEEcC------CCeEEEEECccc
Confidence            99999      999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-30  Score=251.75  Aligned_cols=283  Identities=13%  Similarity=0.136  Sum_probs=205.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~   66 (434)
                      |.+++|||||++|++.+      ++.++||++.+|+.+..+..+..               +...+.+++|+||+++|++
T Consensus        67 V~~v~fspdg~~la~g~------~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCEEEEEc------CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            78999999999999865      57899999999998877754321               0012568999999999999


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +. ++.|++||+.+.........|...|.+++|+|++ ..++.     .+.++.|++|++.+   ++...... +...+.
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s-----~s~d~~v~iwd~~~---~~~~~~~~-~~~~v~  210 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVS-----GSGDRTVRIWDLRT---GQCSLTLS-IEDGVT  210 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEE-----EETTSEEEEEETTT---TEEEEEEE-CSSCEE
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEE-----ecCCCcEEEEECCC---CeeEEEEE-cCCCcE
Confidence            85 6799999998754433444566789999999984 44543     34568999999987   55544443 445678


Q ss_pred             EEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          146 QLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      .+.|+| +|..|+..   ..|.+.+.|.............  .......+...|.+++|+|+|+.|+  +|..|+.|++|
T Consensus       211 ~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~--s~s~d~~v~~w  283 (393)
T 1erj_A          211 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW  283 (393)
T ss_dssp             EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred             EEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecc--cccCCCCCCCCEEEEEECCCCCEEE--EEeCCCEEEEE
Confidence            899999 78775443   2455554443221100000000  0000123467999999999999988  57889999999


Q ss_pred             ecccc-------------eeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871          225 NKKCR-------------PILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       225 d~~~~-------------~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      |++..             ....  -|...+.+++|+|+|++|++++   .+|.|++||..+++.+..+.+|  .+..++|
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~  360 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  360 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe---CCCeEEEEECCCCeEEEEECCCCCCEEEEEe
Confidence            98531             1222  2778899999999999999999   6679999999999998888877  4666888


Q ss_pred             CC------CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          288 SP------DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 sp------dg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +|      ++.+|++++.      |+.|+||++..
T Consensus       361 ~~~~~~~p~~~~l~sgs~------Dg~i~iW~~~~  389 (393)
T 1erj_A          361 ANGSSLGPEYNVFATGSG------DCKARIWKYKK  389 (393)
T ss_dssp             CSSCTTCTTCEEEEEEET------TSEEEEEEEEE
T ss_pred             cCCcCcCCCCCEEEEECC------CCcEEECcccc
Confidence            76      7899999999      99999999854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-29  Score=239.52  Aligned_cols=275  Identities=11%  Similarity=0.122  Sum_probs=210.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+||++.+++.+..+..+.   ..+.+++|+||+++|++++ ++.|++||+...
T Consensus        26 v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~   97 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHK---LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG   97 (312)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCC---CceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence            78999999999999999     89999999999999888876543   6677999999999999885 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|..+.|+|+ +..++.     ++.++.|++|++.+   ++.+.....+...+..+.|+|+|+.++.. 
T Consensus        98 ~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  167 (312)
T 4ery_A           98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVS-----GSFDESVRIWDVKT---GKCLKTLPAHSDPVSAVHFNRDGSLIVSS-  167 (312)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEE-----EETTSCEEEEETTT---CCEEEEECCCSSCEEEEEECTTSSEEEEE-
T ss_pred             cEEEEEcCCCCCEEEEEEcCC-CCEEEE-----EeCCCcEEEEECCC---CEEEEEecCCCCcEEEEEEcCCCCEEEEE-
Confidence            544444556677999999998 455543     34567899999987   67777777788889999999999976543 


Q ss_pred             EecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GS  236 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~  236 (434)
                        ..|...+         .+++..... ..+......++..++|+|+++.|+  ++..++.|++||++. ..+..+  +.
T Consensus       168 --~~d~~i~---------~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~  234 (312)
T 4ery_A          168 --SYDGLCR---------IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLKLWDYSKGKCLKTYTGHK  234 (312)
T ss_dssp             --ETTSCEE---------EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECSSC
T ss_pred             --eCCCcEE---------EEECCCCceeeEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEEecC
Confidence              2343333         333322211 112223457899999999999988  477789999999964 344444  33


Q ss_pred             cCe---eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEc-CCceeeCCcEE
Q 013871          237 GPY---NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT-APRLQIDNGIK  310 (434)
Q Consensus       237 ~~~---~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~-~prl~~D~~i~  310 (434)
                      ...   ......+++++|++++   .+|.|++||+.+++.+..+.+|  .+..++|+|++.+|++++. .     |+.|+
T Consensus       235 ~~~~~~~~~~~~~~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~-----d~~i~  306 (312)
T 4ery_A          235 NEKYCIFANFSVTGGKWIVSGS---EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN-----DKTIK  306 (312)
T ss_dssp             CSSSCCCEEEECSSSCEEEECC---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTT-----TCCEE
T ss_pred             CceEEEEEEEEeCCCcEEEEEC---CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccC-----CccEE
Confidence            322   2233446788999888   5679999999999999998877  4566999999999999972 2     89999


Q ss_pred             EEeec
Q 013871          311 IFHHN  315 (434)
Q Consensus       311 iw~~~  315 (434)
                      ||+.+
T Consensus       307 ~W~~d  311 (312)
T 4ery_A          307 LWKSD  311 (312)
T ss_dssp             EEECC
T ss_pred             EecCC
Confidence            99864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-29  Score=240.83  Aligned_cols=273  Identities=14%  Similarity=0.177  Sum_probs=204.8

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCC-----CcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTET-----GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~-----g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v   74 (434)
                      |++|+|||++ ++|+|++     .|+.|+||++.+     +.++..+..+.   ..+.+++|+||+++|++++ |++|++
T Consensus        20 V~~l~~~~~~~~~l~s~s-----~D~~v~~W~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           20 VTSLATSAGQPNLLLSAS-----RDKTLISWKLTGDDQKFGVPVRSFKGHS---HIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EEEEEECSSCTTEEEEEE-----TTSEEEEEEEEEETTEEEEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEEccCCCccEEEEec-----CCccEEEecCCCCCccccccceEEeCCc---ccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            7899999965 8999999     899999999864     33456666543   6777999999999999885 689999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ||+...........|...|.+++|+|+ +..++.     ++.++.|++|++.    +..+.....+...+..+.|+|.+.
T Consensus        92 wd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~D~~i~vwd~~----~~~~~~~~~h~~~v~~~~~~~~~~  161 (319)
T 3frx_A           92 WDVATGETYQRFVGHKSDVMSVDIDKK-ASMIIS-----GSRDKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEK  161 (319)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTT-SCEEEE-----EETTSCEEEEETT----SCEEEEECCCSSCEEEEEECCC--
T ss_pred             EECCCCCeeEEEccCCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEECC----CCeEEEEeccCCcEEEEEEccCCC
Confidence            999876544444556778999999998 455543     3556799999985    356666777888888999998643


Q ss_pred             e-----EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-
Q 013871          155 G-----LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-  228 (434)
Q Consensus       155 ~-----l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-  228 (434)
                      .     +++  +...|...+.|         ++...........+..+|.+++|+|+|+.|+  ++..|+.|++||++. 
T Consensus       162 ~~~~~~~l~--s~~~d~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~--s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ADDDSVTII--SAGNDKMVKAW---------NLNQFQIEADFIGHNSNINTLTASPDGTLIA--SAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             ----CCEEE--EEETTSCEEEE---------ETTTTEEEEEECCCCSCEEEEEECTTSSEEE--EEETTCEEEEEETTTT
T ss_pred             CCCCccEEE--EEeCCCEEEEE---------ECCcchhheeecCCCCcEEEEEEcCCCCEEE--EEeCCCeEEEEECCCC
Confidence            1     222  22244444433         2222211122234578999999999999998  578899999999964 


Q ss_pred             ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----------CceEEEECCCCCEEEEE
Q 013871          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----------CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----------~~~~~~wspdg~~l~ta  297 (434)
                      ..+..+ +...+.+++|+|+|.+|+++..    +.+++|+++....+..+..+          .+..++|||||++|+++
T Consensus       229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg  304 (319)
T 3frx_A          229 KAMYTLSAQDEVFSLAFSPNRYWLAAATA----TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG  304 (319)
T ss_dssp             EEEEEEECCSCEEEEEECSSSSEEEEEET----TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred             cEEEEecCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEe
Confidence            444454 5678999999999999988763    35999999988777665421          45579999999999999


Q ss_pred             EcCCceeeCCcEEEEeec
Q 013871          298 TTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       298 s~~prl~~D~~i~iw~~~  315 (434)
                      +.      |+.|+||++.
T Consensus       305 ~~------Dg~i~vWd~~  316 (319)
T 3frx_A          305 YT------DNVIRVWQVM  316 (319)
T ss_dssp             ET------TSCEEEEEEE
T ss_pred             ec------CceEEEEEEe
Confidence            99      9999999984

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=1.5e-29  Score=240.13  Aligned_cols=273  Identities=12%  Similarity=0.130  Sum_probs=209.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~   77 (434)
                      |++++|||+|++|++.+      |+.|+|||+.+++..   ..+... .+...+.+++|+||+++|+++. ++.|++|++
T Consensus        54 v~~~~~~~~~~~l~~~~------dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~  126 (337)
T 1gxr_A           54 VCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL  126 (337)
T ss_dssp             CCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred             eEEEEEecCCcEEEEcC------CCeEEEEECCCCCceeeeeccccc-CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            78999999999999865      689999999887532   333211 1336677999999999998885 689999999


Q ss_pred             CCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           78 TDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........  ...+...+..+.|+|+ +..+++-     +.++.|++|++.+   .+.+.....+...+..+.|+|+|+.
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~-----~~dg~v~~~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPD-SKVCFSC-----CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             CCCCcceeeecccCCCceEEEEECCC-CCEEEEE-----eCCCcEEEEeCCC---CceeeeeecccCceEEEEECCCCCE
Confidence            87552222  2334557999999998 4555432     3457899999987   6777777778888999999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-  234 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-  234 (434)
                      +++..   .|..         ++.++.... .....+...+++.+++|+|+++.+++  +..++.+.+||++......+ 
T Consensus       198 l~~~~---~dg~---------i~~~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          198 LWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             EEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEEEEC
T ss_pred             EEEEe---cCCc---------EEEEECCCC-ceEeeecCCCceEEEEECCCCCEEEE--EcCCCcEEEEECCCCCeEEEc
Confidence            76532   2222         344444433 23333445788999999999999884  66788999999986655554 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                       +...+.++.|+|+|++|++++   .+|.|++||+.+++.+....+. .+..++|+|||++|++++.      |+.|+||
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw  333 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY  333 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEEE
T ss_pred             CCccceeEEEECCCCCEEEEec---CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC------CCeEEEE
Confidence             678899999999999999998   5679999999999877665544 6667999999999999999      9999999


Q ss_pred             ee
Q 013871          313 HH  314 (434)
Q Consensus       313 ~~  314 (434)
                      ++
T Consensus       334 ~~  335 (337)
T 1gxr_A          334 EV  335 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.98  E-value=2.6e-29  Score=257.24  Aligned_cols=297  Identities=16%  Similarity=0.223  Sum_probs=231.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++.+     .|+.|++||. +++.+..+..+.   ..+.+++|+||+++++++. ++.|++|+... 
T Consensus       224 v~~~~~s~dg~~l~~~~-----~d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-  293 (577)
T 2ymu_A          224 VRGVAFSPDGQTIASAS-----DDKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNRNG-  293 (577)
T ss_dssp             EEEEEECTTSSCEEEEE-----TTSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTS-
T ss_pred             EEEEEECCCCCEEEEEe-----CCCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-
Confidence            67899999999999998     8999999995 577777776543   6677999999999999885 67999999754 


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|.+++++|+ +..++..     +.++.|++|++..    ..+.....+...+..+.|+|+|+.|+...
T Consensus       294 ~~~~~~~~h~~~v~~~~~~~~-~~~l~t~-----~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          294 QLLQTLTGHSSSVWGVAFSPD-GQTIASA-----SDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEecCCCCeEEEEECCC-CCEEEEE-----eCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            222333445668999999998 4555542     3457899999754    45666677788888999999999876532


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~  238 (434)
                         .|...         .+++..+.. ......+...|.+++|+|||+.|+  ++..++.|.+||..++.+..+  |...
T Consensus       364 ---~dg~v---------~~~~~~~~~-~~~~~~~~~~v~~~~~s~dg~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~  428 (577)
T 2ymu_A          364 ---DDKTV---------KLWNRNGQL-LQTLTGHSSSVRGVAFSPDGQTIA--SASDDKTVKLWNRNGQLLQTLTGHSSS  428 (577)
T ss_dssp             ---TTSEE---------EEEETTCCE-EEEEECCSSCEEEEEECTTSSCEE--EEETTSEEEEECTTCCEEEEEECCSSC
T ss_pred             ---CCCEE---------EEEcCCCCE-EEEecCCCCCeEEEEECCCCCEEE--EEeCCCEEEEEeCCCCEEEEecCCCCC
Confidence               23332         223333321 111223478999999999999988  577789999999887766655  7889


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +.+++|+|++++|++++   .+|.|++||.. ++.+..+..|  .+..++|+|||++|++++.      |+.|+||+.+|
T Consensus       429 v~~~~~s~d~~~l~~~~---~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~------d~~i~iw~~~~  498 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASAS---DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD------DKTVKLWNRNG  498 (577)
T ss_dssp             EEEEEECTTSSEEEEEE---TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEET------TSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEc---CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC------CCEEEEEcCCC
Confidence            99999999999999998   56799999974 5666666665  5666999999999999999      99999999999


Q ss_pred             ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871          317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++...  +...+..++|.|++..|+...
T Consensus       499 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  527 (577)
T 2ymu_A          499 QLLQTLTGHSSSVRGVAFSPDGQTIASAS  527 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             CEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence            887654  456899999999998887653

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=247.99  Aligned_cols=301  Identities=11%  Similarity=0.159  Sum_probs=218.2

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEc----CCCc------EEEEEeecCc-------CCCCCCeeeecCCCcE
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKT----ETGE------AVYQLFQKNM-------TKTTWPSIRFSSDEAV   63 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~----~~g~------~~~~~~~~~~-------~~~~~~~~~~S~d~~~   63 (434)
                      |++++|||+|+ +|++++     .|+.|+|||+    .+++      ....+...-.       +...+.+++|+||+++
T Consensus        48 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           48 IVSSTWNPLDESILAYGE-----KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             CSEEEECSSCTTEEEEEE-----TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eEEEEECCCCCcEEEEec-----CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            78999999999 999999     8899999999    8888      4555443100       2346779999999999


Q ss_pred             EEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           64 ACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        64 la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                      |+++. ++.|++|+... ........+...|.++.|+|+ +..+++.     +.++.|++|++.+   +..+.....+..
T Consensus       123 l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~  192 (425)
T 1r5m_A          123 IVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVKWNKD-GTHIISM-----DVENVTILWNVIS---GTVMQHFELKET  192 (425)
T ss_dssp             EEEEETTSCEEEEETTS-CEEEEECCCCSCEEEEEECTT-SSEEEEE-----ETTCCEEEEETTT---TEEEEEECCC--
T ss_pred             EEEEeCCCeEEEEeCCC-CeeeeccCCCccEEEEEECCC-CCEEEEE-----ecCCeEEEEECCC---CcEEEEeecccc
Confidence            99885 67999999432 322333445667999999998 4555432     3457899999987   666666665555


Q ss_pred             c---------------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC
Q 013871          143 S---------------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       143 ~---------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg  207 (434)
                      .               ...+.|++++. +++. .  .|.         .++.++............+.++|.+++|+|++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~g---------~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDK-FVIP-G--PKG---------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             -------------CCCBSCCEEEETTE-EEEE-C--GGG---------CEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             CccceeeccccCCcceeeEEEEcCCCE-EEEE-c--CCC---------eEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            4               77888998865 2221 1  222         24444444432222222457899999999999


Q ss_pred             CEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871          208 SEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  282 (434)
Q Consensus       208 ~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~  282 (434)
                      +.|+  ++..++.+.+||++. ..+..+  +...+.++.|+|+| +|++++   .+|.|++||+.+++.+..+..+  .+
T Consensus       260 ~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~i  333 (425)
T 1r5m_A          260 KLLL--SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS---MDGSVRLWSLKQNTLLALSIVDGVPI  333 (425)
T ss_dssp             TEEE--EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE---TTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred             CEEE--EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe---CCCcEEEEECCCCcEeEecccCCccE
Confidence            9888  467789999999864 334444  67899999999999 888888   5679999999999998888765  56


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC-c--------------------eeeeeec--c--cceeeEEEcCCC
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-S--------------------LFFKKMF--D--KLFQAEWKPVSP  337 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g-~--------------------~~~~~~~--~--~~~~~~w~p~~~  337 (434)
                      ..++|+|+|++|++++.      |+.|+||++.. .                    ++.....  .  .+..+.|.|++.
T Consensus       334 ~~~~~s~~~~~l~~~~~------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFM------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             EEEEECTTSSEEEEEET------TSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred             EEEEEcCCCCEEEEEEC------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence            67999999999999999      99999999953 3                    3444332  2  789999999987


Q ss_pred             CCCCC
Q 013871          338 DKFGD  342 (434)
Q Consensus       338 ~~~~~  342 (434)
                      .++..
T Consensus       408 ~l~~~  412 (425)
T 1r5m_A          408 KISVA  412 (425)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            66554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.3e-29  Score=239.90  Aligned_cols=282  Identities=11%  Similarity=0.075  Sum_probs=191.4

Q ss_pred             cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcE--------EEEEeecCcCCCCCCeeeecCCCcEEEEec---
Q 013871            2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEA--------VYQLFQKNMTKTTWPSIRFSSDEAVACRMA---   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~--------~~~~~~~~~~~~~~~~~~~S~d~~~la~~~---   68 (434)
                      |++++|||||++|++++....  .-++.|+||++..+..        ...+.... +...+.++  ++++..++.+.   
T Consensus        17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~--~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAI--DASKGIILVGCNEN   93 (365)
T ss_dssp             EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEE--EEETTEEEEECCCC
T ss_pred             EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEE--EeCCCEEEEEECCC
Confidence            789999999999999873211  1245699999875531        22222221 22444454  55666666542   


Q ss_pred             ---------CCeEEEEeCCCCCCceee--eee-------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           69 ---------TNEIQFFDTTDFPKGILY--RLR-------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        69 ---------~~~i~v~~~~~~~~~~~~--~~~-------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                               ++.|++|++.........  ...       ...++.++|||+ +.++++.   +++.++.|+||++.+   
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD-g~~la~a---s~~~d~~i~iwd~~~---  166 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE-GTVAAIA---SSKVPAIMRIIDPSD---  166 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT-SSCEEEE---ESCSSCEEEEEETTT---
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC-CCEEEEE---ECCCCCEEEEeECCC---
Confidence                     457999997654321111  111       123778999999 4555442   245678999999988   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee-e-eecCCCCCeEEEEECcCCC
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-L-VPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~-v~l~~~~~i~~v~wspdg~  208 (434)
                      .+.+.... +...+..+.|+|+|+.|+...    +..         +..+........ . ....+...|.+++|+|+|+
T Consensus       167 ~~~~~~~~-~~~~V~~v~fspdg~~l~s~s----~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~  232 (365)
T 4h5i_A          167 LTEKFEIE-TRGEVKDLHFSTDGKVVAYIT----GSS---------LEVISTVTGSCIARKTDFDKNWSLSKINFIADDT  232 (365)
T ss_dssp             TEEEEEEE-CSSCCCEEEECTTSSEEEEEC----SSC---------EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred             CcEEEEeC-CCCceEEEEEccCCceEEecc----cee---------EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence            66666654 667789999999999876541    211         222322222111 1 1223467899999999999


Q ss_pred             EEEEEEccCCC--eEEEEecccce-----eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-e
Q 013871          209 EFAVVYGFMPA--SATIFNKKCRP-----ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-R  278 (434)
Q Consensus       209 ~~av~~g~~~~--~v~l~d~~~~~-----~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~  278 (434)
                      .++..+.....  .+.+||+....     ...+  +...+++++|||||++||+|+   .||.|+|||+++++++..+ .
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs---~D~~V~iwd~~~~~~~~~~~~  309 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS---NDNSIALVKLKDLSMSKIFKQ  309 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE---TTSCEEEEETTTTEEEEEETT
T ss_pred             EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc---CCCEEEEEECCCCcEEEEecC
Confidence            99864433222  56778875322     2223  678899999999999999999   5579999999999999875 5


Q ss_pred             CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       279 ~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +|  .++.++|||||++|++++.      |++||||++..
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~------D~tvrvw~ip~  343 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSA------ANTIHIIKLPL  343 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEET------TSEEEEEECCT
T ss_pred             cccCCEEEEEECCCCCEEEEEeC------CCeEEEEEcCC
Confidence            56  5677999999999999999      99999999843

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=246.25  Aligned_cols=272  Identities=15%  Similarity=0.156  Sum_probs=209.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++++     .|+.|+||| .+++.+..+..+.   ..+.+++|+||+++|+++. ++.|++|++...
T Consensus       111 v~~~~~s~~~~~l~~~~-----~dg~i~i~~-~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGV-----ENGELRLWN-KTGALLNVLNFHR---APIVSVKWNKDGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEE-TTSCEEEEECCCC---SCEEEEEECTTSSEEEEEETTCCEEEEETTTT
T ss_pred             eEEEEEcCCCCEEEEEe-----CCCeEEEEe-CCCCeeeeccCCC---ccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Confidence            78999999999999999     889999999 7788888876543   6677999999999998874 689999999775


Q ss_pred             CCceeeeeecCC---------------eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           81 PKGILYRLRVPG---------------VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~~~~~~~~~~---------------v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ........+...               +..+.|+|+ +. +++     .+..+.|++|++..   ...+.....+...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-----~~~~g~i~~~d~~~---~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DK-FVI-----PGPKGAIFVYQITE---KTPTGKLIGHHGPIS  251 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEET-TE-EEE-----ECGGGCEEEEETTC---SSCSEEECCCSSCEE
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CE-EEE-----EcCCCeEEEEEcCC---CceeeeeccCCCceE
Confidence            432222233333               788889987 33 322     24567899999987   677777777888899


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      .+.|+|+|+.|++..   .|..         ++.++............+...|.+++|+|++ .++  ++..++.+.+||
T Consensus       252 ~~~~~~~~~~l~~~~---~d~~---------i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~d~~i~i~d  316 (425)
T 1r5m_A          252 VLEFNDTNKLLLSAS---DDGT---------LRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVI--SCSMDGSVRLWS  316 (425)
T ss_dssp             EEEEETTTTEEEEEE---TTSC---------EEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEE--EEETTSEEEEEE
T ss_pred             EEEECCCCCEEEEEc---CCCE---------EEEEECCCCccceEecCCCccEEEEEECCCC-EEE--EEeCCCcEEEEE
Confidence            999999999765532   2322         3334433322222222357899999999999 555  577789999999


Q ss_pred             ccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--------------------EEEEeeCC--
Q 013871          226 KKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--------------------QLGTTRAE--  280 (434)
Q Consensus       226 ~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--------------------~i~~~~~~--  280 (434)
                      ++. ..+..+  +...+.+++|+|+|++|++++   .+|.|.+||+.+++                    .+..+..+  
T Consensus       317 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (425)
T 1r5m_A          317 LKQNTLLALSIVDGVPIFAGRISQDGQKYAVAF---MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD  393 (425)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEECTTSSEEEEEE---TTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred             CCCCcEeEecccCCccEEEEEEcCCCCEEEEEE---CCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence            964 334433  678999999999999999998   56799999999877                    88888877  


Q ss_pred             --CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          281 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 --~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                        .+..++|+|||++|++++.      |+.|+||++.|
T Consensus       394 ~~~v~~~~~s~~~~~l~~~~~------dg~i~iw~~~g  425 (425)
T 1r5m_A          394 NDYIFDLSWNCAGNKISVAYS------LQEGSVVAIPG  425 (425)
T ss_dssp             CCCEEEEEECTTSSEEEEEES------SSCCEEEECCC
T ss_pred             CCceEEEEccCCCceEEEEec------CceEEEEeecC
Confidence              5667999999999999999      99999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=7.8e-29  Score=235.22  Aligned_cols=301  Identities=9%  Similarity=0.053  Sum_probs=218.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+++|||||++|++..     .++.+.+|+............   |...+.+++|+||+++++++.++.|++|++....
T Consensus        12 v~~~~~s~dg~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~   83 (337)
T 1gxr_A           12 AYSFHVTADGQMQPVPF-----PPDALIGPGIPRHARQINTLN---HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG   83 (337)
T ss_dssp             CCEEEECSSSCEEECCC-----CTTSSSSTTCCSEEEEEEEEC---CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred             eeEEEECCCCCEEEeec-----CCCcEeccccCCccccceecc---CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence            67899999999999766     344455555443333333223   3367789999999999999999999999997644


Q ss_pred             Cceee-e----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC--ceeeeeecccceeEEEECCCCC
Q 013871           82 KGILY-R----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        82 ~~~~~-~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ..... .    .+...|.+++|+|+ +..+++.     +..+.|++|++..   ..  .......+...+..+.|+|+|+
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~i~~~d~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~  154 (337)
T 1gxr_A           84 NKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIVG-----GEASTLSIWDLAA---PTPRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             CCSCSEEEECSCTTSBEEEEEECTT-SSEEEEE-----ESSSEEEEEECCC---C--EEEEEEECSSSCEEEEEECTTSS
T ss_pred             ceeeeecccccCCCCcEEEEEEcCC-CCEEEEE-----cCCCcEEEEECCC---CCcceeeecccCCCceEEEEECCCCC
Confidence            22211 1    23457999999998 4555442     3457999999987   44  4455556677788999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~  233 (434)
                      .+++..   .|..         ++.+++...........+.+.|.+++|+|+++.|+  ++..++.+.+||++.. .+..
T Consensus       155 ~l~~~~---~dg~---------v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~  220 (337)
T 1gxr_A          155 VCFSCC---SDGN---------IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW--TGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEe---CCCc---------EEEEeCCCCceeeeeecccCceEEEEECCCCCEEE--EEecCCcEEEEECCCCceEee
Confidence            876532   2222         34444444322222223578999999999999988  4667899999999744 3444


Q ss_pred             e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       234 ~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      + +...+.+++|+|+|++|++++   .+|.|++||+.+++......+. .+..++|+|||++|++++.      |+.|++
T Consensus       221 ~~~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~  291 (337)
T 1gxr_A          221 HDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNA  291 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC------CCcEEE
Confidence            4 578899999999999999998   5579999999988765443332 5667999999999999999      999999


Q ss_pred             EeecC-ceeeee-ecccceeeEEEcCCCCCCCC
Q 013871          312 FHHNG-SLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       312 w~~~g-~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      |++.. +.+... +...+..+.|.|++..++..
T Consensus       292 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  324 (337)
T 1gxr_A          292 WRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             EECCCCeEEEEecCCCcEEEEEECCCCCEEEEe
Confidence            99854 444333 45679999999998766654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.3e-28  Score=232.61  Aligned_cols=276  Identities=16%  Similarity=0.205  Sum_probs=201.1

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCCCc-----EEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEE
Q 013871            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTETGE-----AVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~g~-----~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v   74 (434)
                      |++|+|||+ +++|+|++     .|+.|+|||+.+++     ++..+..   |...+.++.|+||+++|+++ .++.|++
T Consensus        41 V~~v~~sp~~~~~l~S~s-----~D~~i~vWd~~~~~~~~~~~~~~l~~---h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           41 VTQIATTPQFPDMILSAS-----RDKTIIMWKLTRDETNYGIPQRALRG---HSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EEEEEECTTCTTEEEEEE-----TTSCEEEEEECCSSSCSEEEEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEEEEEeCCCCCEEEEEc-----CCCeEEEEECCCCCcccceeeEEEeC---CCCCEEEEEECCCCCEEEEEcccccceE
Confidence            789999998 68999999     89999999997654     3445544   33677799999999999988 4679999


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      |+................+....++|++ ..++.     .+.++.+++|++...  .........+...+..+.|++++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s-----~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVS-----GSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTSC--EEEEECSSSCSSCEEEEEECSCSS
T ss_pred             EeecccceeeeecCCCCceeEEEEeecC-cccee-----ecCCCeEEEEEeCCC--ceEEEEeccccCcccceEEccCCC
Confidence            9988754433334445567788888884 44443     245578999998652  223333445566777889998876


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE  233 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~  233 (434)
                      ..++++ ...|...+         .++............+.++|.+++|+|+++.|+  +|..|+.|.+||++. ..+..
T Consensus       185 ~~~~~s-~~~d~~i~---------i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          185 NPIIVS-CGWDKLVK---------VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA--SGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             SCEEEE-EETTSCEE---------EEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTCEEEEEETTTTEEEEE
T ss_pred             CcEEEE-EcCCCEEE---------EEECCCCceeeEecCCCCcEEEEEECCCCCEEE--EEeCCCeEEEEEeccCceeee
Confidence            544433 22344433         333333322222234578999999999999988  578899999999974 44444


Q ss_pred             e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------C--CceEEEECCCCCEEEEEEcCC
Q 013871          234 L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------E--CSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       234 ~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------~--~~~~~~wspdg~~l~tas~~p  301 (434)
                      + +...++++.|+|++.+++.+    .++.|+|||++++..+..+..         |  .++.++|+|||++|++++.  
T Consensus       253 ~~~~~~v~~~~~~~~~~~~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~--  326 (340)
T 4aow_A          253 LDGGDIINALCFSPNRYWLCAA----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT--  326 (340)
T ss_dssp             EECSSCEEEEEECSSSSEEEEE----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET--
T ss_pred             ecCCceEEeeecCCCCceeecc----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC--
Confidence            4 56789999999998776544    346999999998877766542         2  5667999999999999999  


Q ss_pred             ceeeCCcEEEEeec
Q 013871          302 RLQIDNGIKIFHHN  315 (434)
Q Consensus       302 rl~~D~~i~iw~~~  315 (434)
                          |+.|+||++.
T Consensus       327 ----Dg~v~iW~~~  336 (340)
T 4aow_A          327 ----DNLVRVWQVT  336 (340)
T ss_dssp             ----TSCEEEEEEE
T ss_pred             ----CCEEEEEeCC
Confidence                9999999984

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.5e-30  Score=252.42  Aligned_cols=284  Identities=13%  Similarity=0.216  Sum_probs=203.5

Q ss_pred             cceEEecCCCc-EEEEEecCC-----CCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCe
Q 013871            2 LLLLTCLRVGL-IIQTFQKSS-----TPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNE   71 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~-----~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~   71 (434)
                      |.+++|||+|+ +|++.....     ...|+.|+|||+.+++   .+..+.    +...+.+++|+||+++|+++. ++.
T Consensus        15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~   90 (416)
T 2pm9_A           15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ----VDSKFNDLDWSHNNKIIAGALDNGS   90 (416)
T ss_dssp             SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC----CSSCEEEEEECSSSSCEEEEESSSC
T ss_pred             cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe----cCCceEEEEECCCCCeEEEEccCCe
Confidence            67899999998 888873211     0378999999999885   333332    236677999999999999884 679


Q ss_pred             EEEEeCCCC----CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC------CCCceeeeeecc
Q 013871           72 IQFFDTTDF----PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL------QSQPLARRSFFR  141 (434)
Q Consensus        72 i~v~~~~~~----~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~------~~~~i~~~~~~~  141 (434)
                      |++|++...    ........+...|.+++|+|+++..++.     .+.++.|++|++....      ....+.....+.
T Consensus        91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  165 (416)
T 2pm9_A           91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS-----GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV  165 (416)
T ss_dssp             EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE-----ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSS
T ss_pred             EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE-----EcCCCeEEEEECCCCccccccccccccccccCCC
Confidence            999999762    1222233455679999999985555553     3556789999998731      001122234567


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-------CCCeEEEEECcCCC-EEEEE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-------EGPVHDVQWSYSGS-EFAVV  213 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-------~~~i~~v~wspdg~-~~av~  213 (434)
                      ..+..+.|+|++..+++.++  .|..         +..+++... .....+..       ...|.+++|+|++. .++  
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~--~dg~---------v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--  231 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAG--SSNF---------ASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA--  231 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEES--SSSC---------EEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE--
T ss_pred             CCeeEEEeCCCCCcEEEEEc--CCCC---------EEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEE--
Confidence            78889999999554444332  2333         333333332 22222221       67899999999985 555  


Q ss_pred             EccCCC---eEEEEeccc--ceeEE---eCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cc
Q 013871          214 YGFMPA---SATIFNKKC--RPILE---LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS  282 (434)
Q Consensus       214 ~g~~~~---~v~l~d~~~--~~~~~---~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~  282 (434)
                      ++..++   .|++||++.  ..+..   .|...+++++|+| ++++|++++   .+|.|++||+.+++.+..+..|  .+
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~dg~v~~wd~~~~~~~~~~~~~~~~v  308 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG---RDNTVLLWNPESAEQLSQFPARGNWC  308 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE---SSSEEEEECSSSCCEEEEEECSSSCC
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe---CCCCEEEeeCCCCccceeecCCCCce
Confidence            456677   999999974  23333   3678899999999 999999998   5679999999999999888776  56


Q ss_pred             eEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          283 VTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       283 ~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ..++|+|+| ++|++++.      |+.|+||++...
T Consensus       309 ~~~~~s~~~~~~l~s~~~------d~~i~iw~~~~~  338 (416)
T 2pm9_A          309 FKTKFAPEAPDLFACASF------DNKIEVQTLQNL  338 (416)
T ss_dssp             CCEEECTTCTTEEEECCS------SSEEEEEESCCC
T ss_pred             EEEEECCCCCCEEEEEec------CCcEEEEEccCC
Confidence            679999999 89999998      999999999543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=4.3e-28  Score=239.15  Aligned_cols=280  Identities=14%  Similarity=0.155  Sum_probs=209.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|+||++ +.|+++.      |++|+|||+.+|+++..+..+. +...|.+++|+|||++||++. |++|+||++...
T Consensus       108 ~~~l~wS~~-n~lAvgl------d~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~  179 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ  179 (420)
T ss_dssp             CBCEEECTT-SEEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ceeEEECCC-CEEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC
Confidence            357999985 5777654      7899999999999888776543 346678999999999999985 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........|...+.++++++   ..++.     ++.++.+.+|+....  ...+.....+...++.+.|+++|..++...
T Consensus       180 ~~~~~~~~h~~~v~~~s~~~---~~l~s-----gs~d~~i~~~d~~~~--~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          180 KRLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             EEEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cEEEEEeCCCCceEEEeeCC---CEEEE-----EeCCCceeEeeeccc--ceeeEEecccccceeeeeecCCCCeeeeee
Confidence            54444445556677777654   34443     345678999998763  556677788889999999999999865432


Q ss_pred             EecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEecccc-eeEEe-C
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCR-PILEL-G  235 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~-av~~g~~~~~v~l~d~~~~-~~~~~-~  235 (434)
                         .|....       ++.+......  .......+.+.|..++|+|++..+ ++..|..|+.|++||+... .+..+ +
T Consensus       250 ---~D~~v~-------i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          250 ---NDNLVN-------VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             ---TTSCEE-------EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred             ---ccccce-------EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence               343333       2222111110  111223357899999999977654 5556778999999999754 34444 5


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      ...+.++.|+|+++.+++++.. .+|.|+|||+.+++++..+.+|  .+..++|||||++|+||+.      |++|+||+
T Consensus       320 ~~~v~~~~~~~~~~~lv~~sg~-~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~------D~tvriWd  392 (420)
T 4gga_A          320 HSQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWR  392 (420)
T ss_dssp             SSCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEEC
T ss_pred             ccceeeeeecCCCCeEEEEEec-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEE
Confidence            6788999999999998877522 4689999999999999999887  5677999999999999999      99999999


Q ss_pred             ecC
Q 013871          314 HNG  316 (434)
Q Consensus       314 ~~g  316 (434)
                      +..
T Consensus       393 v~~  395 (420)
T 4gga_A          393 CFE  395 (420)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1.3e-28  Score=236.13  Aligned_cols=272  Identities=12%  Similarity=0.149  Sum_probs=196.5

Q ss_pred             cceEEe-----cC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCCcEEEEec
Q 013871            2 LLLLTC-----LR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA   68 (434)
Q Consensus         2 V~~l~f-----SP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~   68 (434)
                      |++|+|     +| +|++|+|++     .|++|+|||+.++       ..+..+..+   ...+.+++|+||+.++++++
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs-----~D~~v~iWd~~~~~~~~~~~~~~~~l~~h---~~~V~~~~~~~~~~~l~s~s   95 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGS-----RDKTVMIWKLYEEEQNGYFGIPHKALTGH---NHFVSDLALSQENCFAISSS   95 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEE-----TTSCEEEEEECSSCCSSBSEEEEEEECCC---SSCEEEEEECSSTTEEEEEE
T ss_pred             hhheeeEEEeecCCCCCEEEEEc-----CCCEEEEEECCcCCcccccccccchhccC---CCceEEEEECCCCCEEEEEc
Confidence            788999     77 999999999     8999999999754       344555443   36677999999999999885


Q ss_pred             -CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee--eeeccccee
Q 013871           69 -TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR--RSFFRCSTV  145 (434)
Q Consensus        69 -~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~--~~~~~~~~~  145 (434)
                       |++|++||+...........|...|.+++|+|+ +..++.     .+.++.|++|++..   ......  ...+...+.
T Consensus        96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s-----~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-NRQILS-----AGAEREIKLWNILG---ECKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSS-TTEEEE-----EETTSCEEEEESSS---CEEEECCTTTSCSSCEE
T ss_pred             CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCC-CCEEEE-----EcCCCEEEEEeccC---CceeeeecccCCCceee
Confidence             689999999876544444556778999999998 455543     24568999999864   221111  114556678


Q ss_pred             EEEECCCC----------CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871          146 QLNWNRGS----------TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       146 ~~~ws~~G----------~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g  215 (434)
                      .+.|+|++          ..++.   ...|...+.|         +.... .......+.++|.+++|+|+|++|+  +|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw---------d~~~~-~~~~~~~h~~~v~~~~~s~~g~~l~--sg  231 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFAS---VGWDGRLKVW---------NTNFQ-IRYTFKAHESNVNHLSISPNGKYIA--TG  231 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEE---EETTSEEEEE---------ETTTE-EEEEEECCSSCEEEEEECTTSSEEE--EE
T ss_pred             eeeeccccccccccCCCCCEEEE---EcCCCEEEEE---------cCCCc-eeEEEcCccccceEEEECCCCCEEE--EE
Confidence            99999987          33322   2244444333         22221 1111223578999999999999988  57


Q ss_pred             cCCCeEEEEecc--cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE--Eee-----------C
Q 013871          216 FMPASATIFNKK--CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG--TTR-----------A  279 (434)
Q Consensus       216 ~~~~~v~l~d~~--~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~--~~~-----------~  279 (434)
                      ..|+.|++||+.  ......+ +...+++++|+|++++++++.    ++.|++||+.+++.+.  .+.           +
T Consensus       232 s~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (343)
T 2xzm_R          232 GKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG  307 (343)
T ss_dssp             ETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred             cCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence            889999999983  2233344 566799999999999887553    3479999998764322  332           2


Q ss_pred             C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          280 E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       280 ~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |  .+..++|+|+|++|++|+.      |+.|+||++.
T Consensus       308 ~~~~v~~~~~sp~g~~l~sg~~------Dg~v~~w~~~  339 (343)
T 2xzm_R          308 KNPQCTSLAWNALGKKLFAGFT------DGVIRTFSFE  339 (343)
T ss_dssp             SCCCEEEEEECSSSCCEEEEET------TSEEEEEEEE
T ss_pred             CCCceEEEEECCCCCeEEEecC------CceEEEEEEE
Confidence            2  4567999999999999999      9999999984

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-28  Score=231.13  Aligned_cols=278  Identities=13%  Similarity=0.146  Sum_probs=192.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+  +|+|++     .|+.|+|||+.++.  .+..+.. ..|...+.+++|+||+++|++++ |++|++|+..
T Consensus        17 v~~~~~s~~--~las~~-----~D~~i~lw~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           17 IWSFDFSQG--ILATGS-----TDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             EEEEEEETT--EEEEEE-----SSSCEEEEECSSSCCEEEEEECT-TCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             eeeeccCCC--EEEEEc-----CCCEEEEEEecCCCeEEEEEEec-CCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            789999998  999999     89999999998763  3444421 11446777999999999999985 6899999985


Q ss_pred             CCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccceeEEEEC
Q 013871           79 DFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        79 ~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      ...       .......|...|.+++|+|+ +.+++.     .+.++.|++|++.... ....+.....|...+..+.|+
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-g~~las-----~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSND-GYYLAT-----CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTT-SCEEEE-----EETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCC-CCEEEE-----EeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            321       11123345667999999998 555553     3456799999995321 123455666788889999999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK  227 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~  227 (434)
                      |+|..|+.   ...|.+.+.|.       +.. +...+...+ .+.+.|.+++|+|+  +..|+  ++..|+.|++||++
T Consensus       163 p~~~~l~s---~s~D~~i~iW~-------~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~--s~s~D~~v~iw~~~  229 (330)
T 2hes_X          163 PSEALLAS---SSYDDTVRIWK-------DYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFRLC--SGSDDSTVRVWKYM  229 (330)
T ss_dssp             SSSSEEEE---EETTSCEEEEE-------EET-TEEEEEEEECCCSSCEEEEEECCSSSSCEEE--EEETTSCEEEEEEE
T ss_pred             CCCCEEEE---EcCCCeEEEEE-------CCC-CCeeEEEEccCCCCcEEEEEecCCCCeeEEE--EEeCCCeEEEEEec
Confidence            99997543   33566655442       211 111222222 35789999999999  55555  68889999999985


Q ss_pred             cc---------eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEe-eCC---CceEEEECC
Q 013871          228 CR---------PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTT-RAE---CSVTSEWSP  289 (434)
Q Consensus       228 ~~---------~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~-~~~---~~~~~~wsp  289 (434)
                      ..         ....+   |...+.+++|+|++ +|++++   .+|.|+|||..+++  .+... .+|   .+..++|+|
T Consensus       230 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~---~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~  305 (330)
T 2hes_X          230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG---ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE  305 (330)
T ss_dssp             EECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE---TTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-
T ss_pred             CCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe---CCCEEEEEEcCCCceEEEeccccccccceEEEEEEec
Confidence            42         22222   67889999999766 788888   56799999998874  33332 334   456699999


Q ss_pred             --CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          290 --DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       290 --dg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                        ||++|++++.      |+.|+||++..
T Consensus       306 ~~~~~~las~s~------Dg~v~~W~~~~  328 (330)
T 2hes_X          306 LNGKTILATGGD------DGIVNFWSLEK  328 (330)
T ss_dssp             ----CCEEEEET------TSEEEEEEC--
T ss_pred             CCCceEEEEecC------CCcEEEEEecc
Confidence              7999999999      99999999754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-29  Score=246.62  Aligned_cols=279  Identities=12%  Similarity=0.163  Sum_probs=205.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC----CcEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET----GEAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~----g~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~   75 (434)
                      |.+++|||+|++|++++     .|+.|+|||+.+    .+.+..+..+   ...+.+++|+|| +.+|+++. ++.|++|
T Consensus        70 v~~~~~s~~~~~l~~~~-----~dg~v~vw~~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           70 FNDLDWSHNNKIIAGAL-----DNGSLELYSTNEANNAINSMARFSNH---SSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             EEEEEECSSSSCEEEEE-----SSSCEEEECCSSTTSCCCEEEECCCS---SSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             eEEEEECCCCCeEEEEc-----cCCeEEEeecccccccccchhhccCC---ccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            68999999999999998     789999999987    3466666554   367779999998 88888885 6799999


Q ss_pred             eCCCCC------Ccee---eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------
Q 013871           76 DTTDFP------KGIL---YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------  140 (434)
Q Consensus        76 ~~~~~~------~~~~---~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------  140 (434)
                      |+....      ....   ...+...|.+++|+|+++..+++     .+.++.|++|++..   .+.+.....+      
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~  213 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNFASIWDLKA---KKEVIHLSYTSPNSGI  213 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSCEEEEETTT---TEEEEEECCCCCSSCC
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCCEEEEECCC---CCcceEEecccccccc
Confidence            997754      2111   12345679999999986566654     24567899999987   6677766665      


Q ss_pred             ccceeEEEECCCCCeEEEEEEecc-cccCceeecceeEEEEeeCCcceeeeec--CCCCCeEEEEECc-CCCEEEEEEcc
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLVPL--RKEGPVHDVQWSY-SGSEFAVVYGF  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v~l--~~~~~i~~v~wsp-dg~~~av~~g~  216 (434)
                      ...+..+.|+|+|..+++.++.+. +...+       +|  ++.........+  .+...|.+++|+| +++.|+  ++.
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~-------~~--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--s~~  282 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSIL-------IW--DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLL--SSG  282 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCC-------EE--ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEE--EEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEE-------EE--eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEE--EEe
Confidence            677899999999865555443221 00332       33  333321222223  3578999999999 888888  577


Q ss_pred             CCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEe---------------
Q 013871          217 MPASATIFNKKC-RPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTT---------------  277 (434)
Q Consensus       217 ~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~---------------  277 (434)
                      .++.|.+||++. ..+..+  |...+++++|+|+| ++|++++   .+|.|+|||+.+.+.....               
T Consensus       283 ~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (416)
T 2pm9_A          283 RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS---FDNKIEVQTLQNLTNTLDEQETETKQQESETDFW  359 (416)
T ss_dssp             SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC---SSSEEEEEESCCCCCSSCC---------------
T ss_pred             CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe---cCCcEEEEEccCCCCCcccccccccccCCccccc
Confidence            799999999864 445544  68899999999999 7888888   5579999999865421111               


Q ss_pred             ----------------------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          278 ----------------------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ----------------------~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                                            ....+..++|||||++|++++.      |+.|+||++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~------d~~v~~w~~~~  414 (416)
T 2pm9_A          360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD------GKGVSITNPKI  414 (416)
T ss_dssp             -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT------SSCBCCBCCCC
T ss_pred             ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC------CCeEEEEEecc
Confidence                                  0113336899999999999998      99999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.2e-27  Score=222.54  Aligned_cols=278  Identities=14%  Similarity=0.152  Sum_probs=204.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .+|+|||++ +|+++.      |++|+|||+.+|++++.+..+. |...+.+++|+|++++|++++ |++|++|++....
T Consensus        29 ~~l~WS~~~-~lAvg~------D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVAL------DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             BCEEECTTS-EEEEEE------TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             eEEEECCCC-EEEEEe------CCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            579999986 676644      8999999999999988876543 446677999999999999985 6799999998765


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .......+...+..+.+.+   ..++.     .+..+.+.+|.....  ...+.....+......+.|+++|+.++..  
T Consensus       101 ~~~~~~~h~~~~~~~~~~~---~~l~s-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~--  168 (318)
T 4ggc_A          101 RLRNMTSHSARVGSLSWNS---YILSS-----GSRSGHIHHHDVRVA--EHHVATLSGHSQEVCGLRWAPDGRHLASG--  168 (318)
T ss_dssp             EEEEEECCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEE--
T ss_pred             eEEEecCccceEEEeecCC---CEEEE-----EecCCceEeeecCCC--ceeEEEEcCccCceEEEEEcCCCCEEEEE--
Confidence            4333344444555544443   34443     244567888888763  45666777788888999999999986542  


Q ss_pred             ecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEE-EEEEccCCCeEEEEecccceeEE--eCC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEF-AVVYGFMPASATIFNKKCRPILE--LGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~-av~~g~~~~~v~l~d~~~~~~~~--~~~  236 (434)
                       ..|.+.+.       |.+......  .........+.|..++|+|++..+ .+.++..++.|++||.+......  .+.
T Consensus       169 -~~d~~i~i-------wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~  240 (318)
T 4ggc_A          169 -GNDNLVNV-------WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH  240 (318)
T ss_dssp             -ETTSCEEE-------EESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS
T ss_pred             -ecCcceeE-------EECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce
Confidence             24444443       322211110  111222346889999999987655 44567788899999997544332  367


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..+..+.|+|+++.+++++.. .+|.|+|||+.+++++..+.+|  .+..++|+|||++|++++.      |+.|+|||+
T Consensus       241 ~~v~~~~~~~~~~~~~~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~------D~~v~iWd~  313 (318)
T 4ggc_A          241 SQVCSILWSPHYKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA------DETLRLWRC  313 (318)
T ss_dssp             SCEEEEEEETTTTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TTEEEEECC
T ss_pred             eeeeeeeecccccceEEEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec------CCeEEEEEC
Confidence            889999999999998876532 5689999999999999999887  5667999999999999999      999999997


Q ss_pred             c
Q 013871          315 N  315 (434)
Q Consensus       315 ~  315 (434)
                      .
T Consensus       314 ~  314 (318)
T 4ggc_A          314 F  314 (318)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=3.9e-28  Score=235.94  Aligned_cols=275  Identities=11%  Similarity=0.123  Sum_probs=196.8

Q ss_pred             cceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEe-cCCeEEEEeCC
Q 013871            2 LLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRM-ATNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~   78 (434)
                      |++++|||+| ++|++++     .|+.|+|||+.+++....+.... +...+.+++|+| ++.+|+++ .++.|++||+.
T Consensus        76 v~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGS-----KGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             EEEEEECSSCTTEEEEEE-----BTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             EEEEEECCCCCCEEEEEc-----CCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            7899999999 9999999     89999999999988777665322 346777999999 67888887 46899999998


Q ss_pred             CCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           79 DFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        79 ~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ... ......+   ...|.+++|+|+ +..+++     .+.++.|++|++.    +..+.....+...+..+.|+|+|..
T Consensus       150 ~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~~d~~i~i~d~~----~~~~~~~~~h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          150 GSV-IQVFAKTDSWDYWYCCVDVSVS-RQMLAT-----GDSTGRLLLLGLD----GHEIFKEKLHKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             SCE-EEEEECCCCSSCCEEEEEEETT-TTEEEE-----EETTSEEEEEETT----SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred             CCc-eEEEeccCCCCCCeEEEEECCC-CCEEEE-----ECCCCCEEEEECC----CCEEEEeccCCCcEEEEEECCCCCC
Confidence            522 1222212   245999999998 455554     2456799999993    5778888888899999999999995


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCc-ceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PIL  232 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~  232 (434)
                      +++.++  .|...+       +|.+..... ......+.+.+.|.+++|+| +++.|+  ++..++.|.+||++.. .+.
T Consensus       219 ~l~s~~--~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~--~~~~d~~i~iwd~~~~~~~~  287 (383)
T 3ei3_B          219 LMATSS--VDATVK-------LWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLL--TTDQRNEIRVYSSYDWSKPD  287 (383)
T ss_dssp             EEEEEE--TTSEEE-------EEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEE--EEESSSEEEEEETTBTTSCS
T ss_pred             EEEEEe--CCCEEE-------EEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEE--EEcCCCcEEEEECCCCcccc
Confidence            444332  333333       333322111 12233345688999999999 999988  5777899999998632 212


Q ss_pred             Ee--C-------C----------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---Cce-EEEECC
Q 013871          233 EL--G-------S----------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSV-TSEWSP  289 (434)
Q Consensus       233 ~~--~-------~----------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~-~~~wsp  289 (434)
                      .+  +       .          +.+..+.|+|+|++  +++   .+|.|+|||+.+++.+..+..+   .+. .++|+|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s---~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~  362 (383)
T 3ei3_B          288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLN---DKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP  362 (383)
T ss_dssp             EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTT---CCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred             ccccccccccccccceEEeccCCCCceEEEecCCccc--ccC---CCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence            11  1       1          22333555555555  333   5689999999999998888753   333 469999


Q ss_pred             CCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          290 DGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       290 dg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ||++|+++ .      |+.|+||+++.
T Consensus       363 ~g~~l~s~-s------d~~i~iw~~~~  382 (383)
T 3ei3_B          363 TGDVLASG-M------GFNILIWNRED  382 (383)
T ss_dssp             TSSEEEEE-E------TTEEEEEECC-
T ss_pred             CccEEEEe-c------CCcEEEEecCC
Confidence            99999998 4      89999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=7.1e-28  Score=229.17  Aligned_cols=263  Identities=12%  Similarity=0.182  Sum_probs=199.3

Q ss_pred             CCCCCCeeeecCC----CcEEEEec-CCeEEEEeCCCCCCce--eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871           48 TKTTWPSIRFSSD----EAVACRMA-TNEIQFFDTTDFPKGI--LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        48 ~~~~~~~~~~S~d----~~~la~~~-~~~i~v~~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      |...+.+++|+++    +.+|++++ |++|+||+........  ....|...|.++.|+|+ ...++.     .+.++.|
T Consensus        31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~-~~~l~s-----~s~D~~i  104 (321)
T 3ow8_A           31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT-LPIAAS-----SSLDAHI  104 (321)
T ss_dssp             SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSS-SSEEEE-----EETTSEE
T ss_pred             CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCC-CCEEEE-----EeCCCcE
Confidence            4577779999985    56888884 7899999986543211  23345668999999998 455553     3567899


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      ++|++.+   ++.+.....+......+.|+|+|+.|+...   .|..         +..+++...........+...|.+
T Consensus       105 ~lWd~~~---~~~~~~~~~~~~~~~~~~~spdg~~l~~g~---~dg~---------v~i~~~~~~~~~~~~~~~~~~v~~  169 (321)
T 3ow8_A          105 RLWDLEN---GKQIKSIDAGPVDAWTLAFSPDSQYLATGT---HVGK---------VNIFGVESGKKEYSLDTRGKFILS  169 (321)
T ss_dssp             EEEETTT---TEEEEEEECCTTCCCCEEECTTSSEEEEEC---TTSE---------EEEEETTTCSEEEEEECSSSCEEE
T ss_pred             EEEECCC---CCEEEEEeCCCccEEEEEECCCCCEEEEEc---CCCc---------EEEEEcCCCceeEEecCCCceEEE
Confidence            9999988   777777777777888999999999876531   2222         333333333222211223568999


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          201 VQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      ++|+|+|+.|+  +|..++.|++||++. ..+..+  |..++++++|+|+|++|++++   .+|.|+|||+++++.+..+
T Consensus       170 ~~~spdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~dg~i~iwd~~~~~~~~~~  244 (321)
T 3ow8_A          170 IAYSPDGKYLA--SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS---DDGYIKIYDVQHANLAGTL  244 (321)
T ss_dssp             EEECTTSSEEE--EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC---TTSCEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEE--EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc---CCCeEEEEECCCcceeEEE
Confidence            99999999998  578899999999964 444555  678899999999999999998   5679999999999988888


Q ss_pred             eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+|  .+..++|+|||++|++++.      |+.|+|||+. ++++...  +...++.++|.|++..+++.
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~  308 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSS------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV  308 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            877  4667999999999999999      9999999995 5555443  55689999999998877765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=9.3e-28  Score=251.91  Aligned_cols=275  Identities=16%  Similarity=0.205  Sum_probs=201.8

Q ss_pred             CcceEEecCCC-cEEEEEecCCCCCCCcEEEEEcCCC-----cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013871            1 MLLLLTCLRVG-LIIQTFQKSSTPQEKNVILWKTETG-----EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ   73 (434)
Q Consensus         1 ~V~~l~fSP~g-~~L~t~~~~~~~~d~~v~iWd~~~g-----~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~   73 (434)
                      .|++|+|+|++ ++|+|++     .|+.|+|||+.++     ...+.+..+.   ..+.+++|+||+++|++++ |++|+
T Consensus       384 ~V~~v~~~~~~~~~l~s~s-----~D~~i~~W~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSAS-----RDKSIILWKLTKDDKAYGVAQRRLTGHS---HFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEE-----TTSEEEEEECCCSTTCSCEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeEEEEecCCCCCEEEEEe-----CCCcEEEEEccCCCcccccccceecCCC---CcEEEEEECCCCCEEEEEeCCCcEE
Confidence            37899999975 7999999     8999999999753     3445555543   6777999999999999985 68999


Q ss_pred             EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEEEEC
Q 013871           74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQLNWN  150 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~~ws  150 (434)
                      |||+...........|...|.+++|+|++ ..++.     .+.++.|++|++..   ......   ...|...+.++.|+
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s-----~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~  526 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVS-----ASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFS  526 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEE-----EETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEEC
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEE-----EeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEe
Confidence            99998755434445567789999999995 44442     35567999999754   221111   12356668899999


Q ss_pred             CCCCe-EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871          151 RGSTG-LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       151 ~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~  228 (434)
                      |++.. +++.  ...|.+.+.|         ++...........+.+.|.+++|+|+|+.|+  +|+.|+.|++||++ +
T Consensus       527 ~~~~~~~l~s--~s~d~~v~vw---------d~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          527 PNTLQPTIVS--ASWDKTVKVW---------NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA--SGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             SCSSSCEEEE--EETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECTTSSEEE--EEETTSBCEEEETTTT
T ss_pred             CCCCcceEEE--EeCCCeEEEE---------ECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE--EEeCCCeEEEEECCCC
Confidence            98843 3222  2244444433         3333222222233578999999999999988  67889999999996 4


Q ss_pred             ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---------------------CceEEE
Q 013871          229 RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------------------CSVTSE  286 (434)
Q Consensus       229 ~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---------------------~~~~~~  286 (434)
                      ..+..+ +...+++++|||++.+|+++.    ++.|+|||+++++.+..+..+                     .++.++
T Consensus       594 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          594 KKLYSLEANSVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             EEEECCBCSSCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             ceEEEecCCCcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            445555 467799999999999888765    246999999999887765421                     145689


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |||||++|++++.      |+.|+||++.
T Consensus       670 ~spdg~~l~sgs~------Dg~i~iW~i~  692 (694)
T 3dm0_A          670 WSADGSTLFSGYT------DGVIRVWGIG  692 (694)
T ss_dssp             ECTTSSEEEEEET------TSEEEEEEC-
T ss_pred             EcCCCCEEEEEcC------CCeEEEEecc
Confidence            9999999999999      9999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=2e-27  Score=224.12  Aligned_cols=265  Identities=12%  Similarity=0.119  Sum_probs=201.8

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      .++|..+.   ..+.+++|+||+++|+++. |++|++||+...........+...|..+.|+|+ +..++.     ++.+
T Consensus         6 ~~~~~~h~---~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~s~d   76 (304)
T 2ynn_A            6 KKTFSNRS---DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR-KNWIIV-----GSDD   76 (304)
T ss_dssp             EEEEEEEC---SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG-GTEEEE-----EETT
T ss_pred             EEeecCCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC-CCEEEE-----ECCC
Confidence            45565543   6777999999999999884 689999999875443444455667999999998 455543     3456


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee-eeecCCCC
Q 013871          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEG  196 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~  196 (434)
                      +.|++|++.+   ++.+.....|...+..+.|+|++..|+.   ...|.+.+.|.       +  ...... .....+..
T Consensus        77 ~~i~vwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s---gs~D~~v~lWd-------~--~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           77 FRIRVFNYNT---GEKVVDFEAHPDYIRSIAVHPTKPYVLS---GSDDLTVKLWN-------W--ENNWALEQTFEGHEH  141 (304)
T ss_dssp             SEEEEEETTT---CCEEEEEECCSSCEEEEEECSSSSEEEE---EETTSCEEEEE-------G--GGTTEEEEEECCCCS
T ss_pred             CEEEEEECCC---CcEEEEEeCCCCcEEEEEEcCCCCEEEE---ECCCCeEEEEE-------C--CCCcchhhhhcccCC
Confidence            8999999988   7888888889999999999999997643   33555555443       2  121111 12223578


Q ss_pred             CeEEEEECc-CCCEEEEEEccCCCeEEEEeccc-ceeEEe---CCcCeeEEEECC--CCCeEEEEecCCCCCeEEEEEcc
Q 013871          197 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNP--KGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       197 ~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~-~~~~~~---~~~~~~~i~~SP--~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .|.+++|+| ++..|+  +|..|+.|++||++. .....+   +...++.+.|+|  ++++|++++   .+|.|+|||++
T Consensus       142 ~v~~v~~~p~~~~~l~--sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~D~~i~iWd~~  216 (304)
T 2ynn_A          142 FVMCVAFNPKDPSTFA--SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS---DDLTIKIWDYQ  216 (304)
T ss_dssp             CEEEEEECTTCTTEEE--EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE---TTSEEEEEETT
T ss_pred             cEEEEEECCCCCCEEE--EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc---CCCeEEEEeCC
Confidence            999999999 567777  688899999999853 333333   457788999987  778999998   56799999999


Q ss_pred             CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013871          270 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       270 ~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~  338 (434)
                      +++++..+.+|  .+..++|+|++++|++++.      |+.|+|||.. ++++...  +.+.++.++|.|.+..
T Consensus       217 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          217 TKSCVATLEGHMSNVSFAVFHPTLPIIISGSE------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             TTEEEEEEECCSSCEEEEEECSSSSEEEEEET------TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             CCccceeeCCCCCCEEEEEECCCCCEEEEEcC------CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence            99999999887  5566999999999999999      9999999995 4555444  3467899999998754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=2.5e-29  Score=247.05  Aligned_cols=304  Identities=12%  Similarity=0.096  Sum_probs=214.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +++++|||+|++|++.+     .|+.|++||+.+++....+..+    .......|++|+++|+++. ++.|++|++...
T Consensus        59 ~~~~~~s~~g~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  129 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKAR-----LDGHDFLFNTIIRDGSKMLKRA----DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN  129 (420)
T ss_dssp             CTTCEEEEEETTEEEEE-----ETTEEEEEECCSEETTTTSCSC----CEEEEEEECSSSCEEEEEETTSCEEEECTTSC
T ss_pred             ccceeeeecCCeEEEEE-----cCCcEEEEEecccceeeEEecC----CceEEEEEecCCCEEEEEECCCCEEEEeCCCc
Confidence            35789999999999999     7899999999887654333222    2232457899999999884 679999998764


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|.+++|+|+ +..++.     .+.++.|++|++.+   .+.+.....|...+..+.|+|+|+.|+.. 
T Consensus       130 ~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-  199 (420)
T 3vl1_A          130 LQREIDQAHVSEITKLKFFPS-GEALIS-----SSQDMQLKIWSVKD---GSNPRTLIGHRATVTDIAIIDRGRNVLSA-  199 (420)
T ss_dssp             EEEEETTSSSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETTT---CCCCEEEECCSSCEEEEEEETTTTEEEEE-
T ss_pred             ceeeecccccCccEEEEECCC-CCEEEE-----EeCCCeEEEEeCCC---CcCceEEcCCCCcEEEEEEcCCCCEEEEE-
Confidence            432222345678999999998 455553     24567999999988   67778888889999999999999987543 


Q ss_pred             EecccccCceeecce--eEEEEeeCCcceee---e----------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          161 QSDVDKTNQSYYGES--KLNYLTTDGTHEGL---V----------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~--~l~~l~~~~~~~~~---v----------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                        ..|.+.+.|.-..  .+..+.........   +          ......++.+++|+|+|+.++  +|..++.|.+||
T Consensus       200 --~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~~~~dg~i~i~d  275 (420)
T 3vl1_A          200 --SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI--AGHVSGVITVHN  275 (420)
T ss_dssp             --ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE--EEETTSCEEEEE
T ss_pred             --cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE--EEcCCCeEEEEE
Confidence              2455555443211  11111110000000   0          000135666677789998887  577899999999


Q ss_pred             ccc-ceeEEe---CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCE-EEEEeeC-C-CceEEEECCCCCEEEEE
Q 013871          226 KKC-RPILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGK-QLGTTRA-E-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       226 ~~~-~~~~~~---~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~-~i~~~~~-~-~~~~~~wspdg~~l~ta  297 (434)
                      ++. ..+..+   +...+++++|+|+|+ +|++++   .+|.|++||+.+++ .+..+.. + ..+...++|+|++|+++
T Consensus       276 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~  352 (420)
T 3vl1_A          276 VFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY---ENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSS  352 (420)
T ss_dssp             TTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEE
T ss_pred             CCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe---CCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEe
Confidence            964 334444   567899999999999 899888   56799999999874 3444443 2 44444466789999999


Q ss_pred             EcCCceeeCCcEEEEeecCc------------eeeeeecccceeeEEEcCCC
Q 013871          298 TTAPRLQIDNGIKIFHHNGS------------LFFKKMFDKLFQAEWKPVSP  337 (434)
Q Consensus       298 s~~prl~~D~~i~iw~~~g~------------~~~~~~~~~~~~~~w~p~~~  337 (434)
                      +.      |+.|+||++...            .....+...+..++|.|++.
T Consensus       353 ~~------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          353 GF------DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             TT------TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred             cC------CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence            98      999999998651            12223446789999999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=2e-27  Score=264.66  Aligned_cols=306  Identities=13%  Similarity=0.136  Sum_probs=228.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|++++ +++|+|||+.+.
T Consensus       618 v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~  689 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHE---DEVLCCAFSSDDSYIATCSADKKVKIWDSATG  689 (1249)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCC---CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999999     89999999999999999887643   6777999999999999985 679999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|.++.|+|+++..+.+.    ++.++.|++|++.+   +..+.....|...+..+.|+|+|..++...
T Consensus       690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s----g~~d~~v~vwd~~~---~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          690 KLVHTYDEHSEQVNCCHFTNKSNHLLLAT----GSNDFFLKLWDLNQ---KECRNTMFGHTNSVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             CEEEEEECCSSCEEEEEECSSSSCCEEEE----EETTSCEEEEETTS---SSEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred             ceEEEEcCCCCcEEEEEEecCCCceEEEE----EeCCCeEEEEECCC---cchhheecCCCCCEEEEEEecCCCEEEEEE
Confidence            65445556677899999999754433221    34567899999988   777888888888999999999999765432


Q ss_pred             EecccccCceeecce---------------------------------------------e-------------------
Q 013871          161 QSDVDKTNQSYYGES---------------------------------------------K-------------------  176 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~---------------------------------------------~-------------------  176 (434)
                         .|.+.+.|.-..                                             .                   
T Consensus       763 ---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~  839 (1249)
T 3sfz_A          763 ---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH  839 (1249)
T ss_dssp             ---SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSS
T ss_pred             ---CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCC
Confidence               333333331100                                             0                   


Q ss_pred             ------------------------EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---
Q 013871          177 ------------------------LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---  229 (434)
Q Consensus       177 ------------------------l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---  229 (434)
                                              +..++............+.+.|.+++|+|+|+.|+  +++.++.+.+||+...   
T Consensus       840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~--s~s~dg~v~vw~~~~~~~~  917 (1249)
T 3sfz_A          840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFL--TASDDQTIRVWETKKVCKN  917 (1249)
T ss_dssp             SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEEHHHHHSC
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEE--EEeCCCeEEEEEcccccee
Confidence                                    01111111111111123467899999999999988  5777899999996421   


Q ss_pred             -------------------------------------eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          230 -------------------------------------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       230 -------------------------------------~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                                                           .....+...+.+++|+|+|+++++++   .+|.|.+||+.+++
T Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~---~~g~i~i~d~~~~~  994 (1249)
T 3sfz_A          918 SAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGD---EDGAIKIIELPNNR  994 (1249)
T ss_dssp             CSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEE---TTSCCEEEETTTTS
T ss_pred             eeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEc---CCCCEEEEEcCCCc
Confidence                                                 01112356788999999999999998   56799999999998


Q ss_pred             EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eee-eecccceeeEEEcCC
Q 013871          273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFK-KMFDKLFQAEWKPVS  336 (434)
Q Consensus       273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~-~~~~~~~~~~w~p~~  336 (434)
                      .+..+.+|  .+..++|+|||++|++++.      |+.|++|++.... +.. .+...+..+.|.|..
T Consensus       995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A          995 VFSSGVGHKKAVRHIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp             CEEECCCCSSCCCCEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred             eeeecccCCCceEEEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence            88877766  5666999999999999999      9999999996543 322 244567888888854

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=2.4e-27  Score=227.04  Aligned_cols=280  Identities=10%  Similarity=0.129  Sum_probs=198.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~   77 (434)
                      |.+++|||+|.+|++.+.. ...|+.|+|||+.+++........  +...+.+++|+|+   +.+|+++. ++.|++|++
T Consensus        21 v~~~~~~p~~~~l~~~~s~-~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           21 VFDCKWVPCSAKFVTMGNF-ARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             EEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             eEEEEEcCCCceEEEecCc-cCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            7899999999766644410 012799999999999875543322  2367779999998   68888874 689999999


Q ss_pred             CCCC-CceeeeeecCCeeEEEE------eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc----ceeE
Q 013871           78 TDFP-KGILYRLRVPGVAAFEV------SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC----STVQ  146 (434)
Q Consensus        78 ~~~~-~~~~~~~~~~~v~~~~~------sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~----~~~~  146 (434)
                      .... .......+...|.++.|      +|+ +..+++     .+.++.|++|++...  ...+.....+..    .+..
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~-----~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVT-----GSRDGTVKVWDPRQK--DDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEE-----EETTSCEEEECTTSC--SSCSEEECCCTTSCCCCEEE
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCC-ccEEEE-----EeCCCeEEEEeCCCC--CCcceeccccCCCCCCceEE
Confidence            8765 33444556677888865      555 445543     245678999999873  224555544333    5566


Q ss_pred             EE----ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc---CCCEEEEEEccCCC
Q 013871          147 LN----WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY---SGSEFAVVYGFMPA  219 (434)
Q Consensus       147 ~~----ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp---dg~~~av~~g~~~~  219 (434)
                      +.    |+++|..+++..   .|.         .++.+++... .......+...|.+++|+|   ++..|++  +..++
T Consensus       170 ~~~~~~~~~~~~~l~~~~---~d~---------~i~i~d~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg  234 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGY---DNG---------DIKLFDLRNM-ALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEG  234 (357)
T ss_dssp             EEEECCCC-CCCEEEEEE---TTS---------EEEEEETTTT-EEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTT
T ss_pred             EEEEeccCCCCCEEEEEc---cCC---------eEEEEECccC-ceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCC
Confidence            66    789999876532   222         2444554444 2333344578999999999   8988884  67789


Q ss_pred             eEEEEecccce---eEE-----eCCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCC-------------------
Q 013871          220 SATIFNKKCRP---ILE-----LGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-------------------  271 (434)
Q Consensus       220 ~v~l~d~~~~~---~~~-----~~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~-------------------  271 (434)
                      .|.+||++...   ...     .|...+++++|+|+|+ +|++++   .+|.|++||++++                   
T Consensus       235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          235 KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAG---GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEe---CCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            99999986322   111     4788999999999999 788888   5679999998853                   


Q ss_pred             EEEEEeeCC--CceEEEECCCCCEEE-EEEcCCceeeCCcEEEEeecC
Q 013871          272 KQLGTTRAE--CSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 ~~i~~~~~~--~~~~~~wspdg~~l~-tas~~prl~~D~~i~iw~~~g  316 (434)
                      +.+..+..|  .+..++|+|+|++|+ +++.      |+.|+||++..
T Consensus       312 ~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~------d~~i~iw~~~~  353 (357)
T 3i2n_A          312 SLLQNVTLSTQPISSLDWSPDKRGLCVCSSF------DQTVRVLIVTK  353 (357)
T ss_dssp             EEEEEEECCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECC
T ss_pred             ceeeccccCCCCeeEEEEcCCCCeEEEEecC------CCcEEEEECCC
Confidence            456666665  566799999999998 7888      99999999854

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.8e-27  Score=229.54  Aligned_cols=277  Identities=15%  Similarity=0.211  Sum_probs=206.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      .+++||+  ..|++++     .|+.|+|||+.+++.+..+...  +...+.+++|+||+++|+++. ++.|++|++....
T Consensus        97 ~~~~~s~--~~l~~~~-----~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~  167 (401)
T 4aez_A           97 NLLDWSN--LNVVAVA-----LERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT  167 (401)
T ss_dssp             BCEEECT--TSEEEEE-----ETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             EEEeecC--CCEEEEE-----CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe
Confidence            3466665  5577777     7899999999999988777654  336777999999999999885 6899999998765


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .......+...|.+++|++   ..+++     ++.++.|++|++...  ...+.....+...+..+.|+|+|..+++.. 
T Consensus       168 ~~~~~~~~~~~v~~~~~~~---~~l~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  236 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNR---HVLSS-----GSRSGAIHHHDVRIA--NHQIGTLQGHSSEVCGLAWRSDGLQLASGG-  236 (401)
T ss_dssp             EEEEECCCSSCEEEEEEET---TEEEE-----EETTSEEEEEETTSS--SCEEEEEECCSSCEEEEEECTTSSEEEEEE-
T ss_pred             EEEEecCCCCceEEEEECC---CEEEE-----EcCCCCEEEEecccC--cceeeEEcCCCCCeeEEEEcCCCCEEEEEe-
Confidence            4444455667899999964   34443     245679999999842  566777778889999999999999876532 


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEecc-cceeEEe-CCcC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK-CRPILEL-GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~-g~~~~~v~l~d~~-~~~~~~~-~~~~  238 (434)
                        .|...         ..+++...........+...|.+++|+|++..+++.. |..++.+.+||++ +..+..+ +...
T Consensus       237 --~d~~v---------~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~  305 (401)
T 4aez_A          237 --NDNVV---------QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ  305 (401)
T ss_dssp             --TTSCE---------EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred             --CCCeE---------EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence              33333         3333333322222224578999999999887776643 3479999999996 4445555 5778


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +++++|+|+|++|++++. ..+|.|.|||+.+++....  +.+|  .+..++|+|||++|++++.      |+.|+||++
T Consensus       306 v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~------dg~i~iw~~  378 (401)
T 4aez_A          306 VTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS------DENLKFWRV  378 (401)
T ss_dssp             EEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT------TSEEEEEEC
T ss_pred             EEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC------CCcEEEEEC
Confidence            999999999999998642 1468999999998754443  4454  6677999999999999999      999999999


Q ss_pred             cCc
Q 013871          315 NGS  317 (434)
Q Consensus       315 ~g~  317 (434)
                      ...
T Consensus       379 ~~~  381 (401)
T 4aez_A          379 YDG  381 (401)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=4e-27  Score=229.31  Aligned_cols=274  Identities=14%  Similarity=0.194  Sum_probs=202.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc------EEEEEeecCcCCCCCCeeeecCC----C---cEEEEec
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE------AVYQLFQKNMTKTTWPSIRFSSD----E---AVACRMA   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~------~~~~~~~~~~~~~~~~~~~~S~d----~---~~la~~~   68 (434)
                      |++|+|+|  ++|++++     .|+.|+|||+.+++      .+..+..+.   ..+.+++|+|+    +   ++|+++.
T Consensus        19 i~~~~~~~--~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~g~~~~~l~s~~   88 (397)
T 1sq9_A           19 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHK---SGLHHVDVLQAIERDAFELCLVATTS   88 (397)
T ss_dssp             EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCT---TCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             eEEEEecC--CeEEEEc-----CCCEEEEEECCCcccccCCCcceEEecCC---CcEEEEEEecccccCCccccEEEEEc
Confidence            78999999  8999999     89999999999887      667776543   67779999999    9   8888874


Q ss_pred             -CCeEEEEeCCCCCC-----ceeeeee-----cCCeeEEEEe----CCCCCe-EEEEecCCCCCCceEEEEEcCCCCC--
Q 013871           69 -TNEIQFFDTTDFPK-----GILYRLR-----VPGVAAFEVS----KAPGSH-VAVFVPESKGSPASVQIYACGKDLQ--  130 (434)
Q Consensus        69 -~~~i~v~~~~~~~~-----~~~~~~~-----~~~v~~~~~s----p~~~~~-ia~~~~~~~~~~~~v~i~~~~~~~~--  130 (434)
                       ++.|++|++.....     ......+     ...|.++.|+    |++ .. +++.     +.++.|++|++.....  
T Consensus        89 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~-----~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           89 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVAT-----DVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEE-----ETTSCEEEEEEESSSSHH
T ss_pred             CCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEE-----eCCCcEEEEeCCcccccc
Confidence             68999999877553     2333334     3679999999    874 44 5432     3457899999976100  


Q ss_pred             -CCcee-----ee-------eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----
Q 013871          131 -SQPLA-----RR-------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----  193 (434)
Q Consensus       131 -~~~i~-----~~-------~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----  193 (434)
                       ...+.     ..       ..+...+..+.|+|+| .+++. .  .|..         ++.+++... .....+.    
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~-~--~dg~---------i~i~d~~~~-~~~~~~~~~~~  228 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG-F--NNGT---------VQISELSTL-RPLYNFESQHS  228 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE-C--TTSE---------EEEEETTTT-EEEEEEECCC-
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE-e--CCCc---------EEEEECCCC-ceeEEEecccc
Confidence             01222     33       2356778899999999 54432 1  2222         334444332 2222222    


Q ss_pred             C---CCCeEEEEECcCCCEEEEEEccCC---CeEEEEecc-cceeEEe---------------CCcCeeEEEECCCCCeE
Q 013871          194 K---EGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKK-CRPILEL---------------GSGPYNTVRWNPKGKFL  251 (434)
Q Consensus       194 ~---~~~i~~v~wspdg~~~av~~g~~~---~~v~l~d~~-~~~~~~~---------------~~~~~~~i~~SP~g~~l  251 (434)
                      +   ..+|.+++|+|+++.|++  +..+   +.|.+||++ ...+..+               |...+.+++|+|+|++|
T Consensus       229 h~~~~~~i~~i~~~~~~~~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  306 (397)
T 1sq9_A          229 MINNSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  306 (397)
T ss_dssp             --CCCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             ccccCCccceEEECCCCCEEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence            3   789999999999999884  6667   899999986 3444444               57889999999999999


Q ss_pred             EEEecCCCCCeEEEEEccCCEEEEEee------C-----------------CCceEEEECCCC----------CEEEEEE
Q 013871          252 CLAGFGNLPGDMAFWDYVDGKQLGTTR------A-----------------ECSVTSEWSPDG----------RYFMTAT  298 (434)
Q Consensus       252 ~~~~~~~~~g~i~iwd~~~~~~i~~~~------~-----------------~~~~~~~wspdg----------~~l~tas  298 (434)
                      ++++   .+|.|+|||+.+++.+..+.      .                 ..+..++|+|+|          ++|++++
T Consensus       307 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~  383 (397)
T 1sq9_A          307 CSAG---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC  383 (397)
T ss_dssp             EEEE---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred             EEEe---CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence            9998   56799999999999998888      3                 356679999999          7999999


Q ss_pred             cCCceeeCCcEEEEeecC
Q 013871          299 TAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~g  316 (434)
                      .      |+.|+||++.+
T Consensus       384 ~------dg~i~iw~~~~  395 (397)
T 1sq9_A          384 L------DRSIRWFREAG  395 (397)
T ss_dssp             T------TTEEEEEEEEC
T ss_pred             C------CCcEEEEEcCC
Confidence            9      99999999864

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.2e-27  Score=237.03  Aligned_cols=281  Identities=14%  Similarity=0.131  Sum_probs=196.9

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~   78 (434)
                      |+||+||| ++++||+++     .|++|+|||+.+++....+... .|...|.+++|+| |+.+|++++ |++|++||+.
T Consensus       122 V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            78999999 578999999     8999999999887654333222 2447788999998 788888884 6899999986


Q ss_pred             CCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           79 DFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        79 ~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ..........+  ...+.+++|+|+ +.++++     ++.++.|++|++..    +.+.....|...+..+.|+|++..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~-----g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~  265 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSAS-SRMVVT-----GDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWF  265 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETT-TTEEEE-----ECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred             CCceeEEeccCCCCccEEEEEECCC-CCEEEE-----EeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceE
Confidence            53211111111  124678999998 455553     35678999999853    5666777888899999999999877


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCccee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~  234 (434)
                      ++.++  .|.+.+.       |.+........ .....+..+|.+++|+|+|++|+  +++.|+.|+|||++. .....+
T Consensus       266 ~~s~s--~d~~v~i-------wd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~--s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          266 LATAS--VDQTVKI-------WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL--TTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             EEEEE--TTSBCCE-------EETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE--EEESSSCEEEEESSSSSSEEEE
T ss_pred             EEEec--CcceeeE-------EecccccccceEEEeeeccccccceeECCCCCeeE--EEcCCCEEEEEECCCCccceEE
Confidence            65433  4555543       33322111111 11233578999999999999988  578899999999863 333322


Q ss_pred             --CC------cCeeEEEECCCCCeEEEEecCC---------CCCeEEEEEccCCEEEEEeeC-C--CceE-EEECCCCCE
Q 013871          235 --GS------GPYNTVRWNPKGKFLCLAGFGN---------LPGDMAFWDYVDGKQLGTTRA-E--CSVT-SEWSPDGRY  293 (434)
Q Consensus       235 --~~------~~~~~i~~SP~g~~l~~~~~~~---------~~g~i~iwd~~~~~~i~~~~~-~--~~~~-~~wspdg~~  293 (434)
                        +.      .....+.|+|++.+++++...+         .++.|++||..+++.+..+.. |  .+.. ++|||||++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence              11      1234567888888888775422         235799999999988887643 3  3444 479999999


Q ss_pred             EEEEEcCCceeeCCcEEEEeecC
Q 013871          294 FMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       294 l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      |++++       |+.|+||++..
T Consensus       415 lasg~-------d~~i~iW~~~~  430 (435)
T 4e54_B          415 LASAM-------GYHILIWSQQE  430 (435)
T ss_dssp             EEEEC-------SSEEEECCCC-
T ss_pred             EEEEc-------CCcEEEEECCc
Confidence            98764       78999999843

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=4.2e-27  Score=250.63  Aligned_cols=274  Identities=12%  Similarity=0.077  Sum_probs=211.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+||+++|+++. ++.|++|+..+.
T Consensus        16 v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~   87 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG   87 (814)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCC---CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence            78999999999999998     78999999999999998887654   6777999999999999885 679999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAV  159 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l~~~  159 (434)
                      ........+...|.+++|+|+ +..+++.     +.++.|++|++...  .........+...+..+.|+| +|..+++.
T Consensus        88 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~-----~~dg~i~vw~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           88 EKVVDFEAHPDYIRSIAVHPT-KPYVLSG-----SDDLTVKLWNWENN--WALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             CEEEEEECCSSCEEEEEECSS-SSEEEEE-----ETTSEEEEEEGGGT--SEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             cEEEEEecCCCCEEEEEEeCC-CCEEEEE-----cCCCEEEEEECCCC--ceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            654444556678999999999 5555532     45679999999762  255666677888899999999 66665442


Q ss_pred             EEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe-
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL-  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~-  234 (434)
                       +  .|.+         +..+++.... ...+......++..++|+|  ++..++  ++..++.+.+||++. ..+..+ 
T Consensus       160 -~--~dg~---------v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          160 -C--LDRT---------VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI--TASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             -E--TTSE---------EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE--EECTTSEEEEEETTTTEEEEEEE
T ss_pred             -e--CCCe---------EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE--EEeCCCEEEEEECCCCcEEEEEc
Confidence             2  2322         3333333221 2222233358899999999  888888  577889999999864 334444 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEE-EEEEcCCceeeCCcEE
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYF-MTATTAPRLQIDNGIK  310 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l-~tas~~prl~~D~~i~  310 (434)
                       |...+.+++|+|+|++|++++   .+|.|++||+.+++.+..+..+  .+..++|+|+|+.+ ++++.      |+++.
T Consensus       226 ~~~~~v~~~~~~~~~~~l~~~~---~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~  296 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTLPIIISGS---EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFT  296 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE------TTEEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe------CCCEE
Confidence             678999999999999999998   5679999999999888888765  66679999999843 44445      78888


Q ss_pred             EEee
Q 013871          311 IFHH  314 (434)
Q Consensus       311 iw~~  314 (434)
                      +|++
T Consensus       297 ~~~~  300 (814)
T 3mkq_A          297 VLSL  300 (814)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8886

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=1.7e-26  Score=221.34  Aligned_cols=273  Identities=12%  Similarity=0.073  Sum_probs=202.8

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +...++..+   ...+.+++|+||+++|++++ |++|++||............+...|..++|+|+ +..+++     ++
T Consensus        46 ~~~~~l~gH---~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s-----~~  116 (340)
T 1got_B           46 RTRRTLRGH---LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVAC-----GG  116 (340)
T ss_dssp             CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTT-SSEEEE-----EE
T ss_pred             hhheeecCC---CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCC-CCEEEE-----Ee
Confidence            345556554   36777999999999999985 679999999876654445566677999999998 555554     34


Q ss_pred             CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC
Q 013871          116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      .++.|++|++..... .........|...+..+.|++++. ++.   ...|.+.+.|         ++........-..+
T Consensus       117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s---~s~d~~i~~w---------d~~~~~~~~~~~~h  183 (340)
T 1got_B          117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT---SSGDTTCALW---------DIETGQQTTTFTGH  183 (340)
T ss_dssp             TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE---EETTSCEEEE---------ETTTTEEEEEECCC
T ss_pred             CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE---EECCCcEEEE---------ECCCCcEEEEEcCC
Confidence            568999999976311 123344556777888899998876 322   2244444433         33332111122235


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+.|.+++|+|+++.|+  +|..|+.|++||++. ..+..+  |...+++++|+|+|++|++++   .+|.|+|||+.++
T Consensus       184 ~~~v~~~~~~~~~~~l~--sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~d~~v~iwd~~~~  258 (340)
T 1got_B          184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD  258 (340)
T ss_dssp             SSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred             CCceEEEEECCCCCEEE--EEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc---CCCcEEEEECCCC
Confidence            78999999999999888  688899999999964 344444  788999999999999999999   5679999999999


Q ss_pred             EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--eecccceeeEEEcCCCCCCCC
Q 013871          272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+..+..+    .+..++|+|+|++|++++.      |+.|+|||+. +..+..  .+...+..+.|.|++..+++.
T Consensus       259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~  330 (340)
T 1got_B          259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred             cEEEEEccCCcccceEEEEECCCCCEEEEECC------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence            888777543    4667999999999999999      9999999984 444433  355689999999998877665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.96  E-value=5.7e-27  Score=230.57  Aligned_cols=263  Identities=11%  Similarity=0.116  Sum_probs=206.0

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+|++.+|++++ |++|+|||............|...|.+++|+|+ +..++.     ++.++.|++|++.
T Consensus       107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~s-----gs~D~~i~iwd~~  180 (410)
T 1vyh_C          107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLAS-----CSADMTIKLWDFQ  180 (410)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSCCCEEETT
T ss_pred             cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEE-----EeCCCeEEEEeCC
Confidence            346778999999999999985 679999999886655556667788999999998 455553     3566789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      .   ...+.....|...+..+.|+|+|+.|+..   ..|.+.+.|         ++........-..+...|..+.|+|+
T Consensus       181 ~---~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~w---------d~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          181 G---FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMW---------EVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             S---SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             C---CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEE---------ECCCCcEEEEEeCCCccEEEEEECCC
Confidence            7   67778888888899999999999986543   245444433         32222111111234678999999999


Q ss_pred             CCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCC--------------------CCeEEEEecCCCCCeE
Q 013871          207 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPK--------------------GKFLCLAGFGNLPGDM  263 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~--------------------g~~l~~~~~~~~~g~i  263 (434)
                      |..|+  ++..|+.|++||++.. ....+  |...+++++|+|+                    |.+|++++   .+|.|
T Consensus       246 g~~l~--s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---~D~~i  320 (410)
T 1vyh_C          246 GTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---RDKTI  320 (410)
T ss_dssp             SSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---TTSEE
T ss_pred             CCEEE--EEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---CCCeE
Confidence            99888  5778999999999643 33444  7889999999997                    67899998   56799


Q ss_pred             EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcCCCC
Q 013871          264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~~~~  338 (434)
                      ++||+.+++++..+.+|  .+..++|+|+|++|++++.      |+.|+|||+. ++++...  +...+..+.|+|..+.
T Consensus       321 ~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~  394 (410)
T 1vyh_C          321 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY  394 (410)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSC
T ss_pred             EEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCE
Confidence            99999999999988877  4567999999999999999      9999999995 4444443  4567999999999887


Q ss_pred             CCCC
Q 013871          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      +++.
T Consensus       395 l~sg  398 (410)
T 1vyh_C          395 VVTG  398 (410)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-26  Score=215.71  Aligned_cols=267  Identities=10%  Similarity=0.080  Sum_probs=203.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++| |+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++++++. ++.|++|++...
T Consensus        21 v~~~~~-~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~   91 (313)
T 3odt_A           21 VRDVVA-VDDSKVASVS-----RDGTVRLWSKDDQWLGTVVYTGQ---GFLNSVCYDSEKELLLFGGKDTMINGVPLFAT   91 (313)
T ss_dssp             EEEEEE-EETTEEEEEE-----TTSEEEEEEESSSEEEEEEEECS---SCEEEEEEETTTTEEEEEETTSCEEEEETTCC
T ss_pred             cEEEEe-cCCCEEEEEE-----cCCcEEEEECCCCEEEEEeecCC---ccEEEEEECCCCCEEEEecCCCeEEEEEeeec
Confidence            789999 9999999999     89999999999998887777653   6777999999999999884 679999998764


Q ss_pred             CC---ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC-CCCeE
Q 013871           81 PK---GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGL  156 (434)
Q Consensus        81 ~~---~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~-~G~~l  156 (434)
                      ..   ......+...|.++.|.   +..+++     .+.++.|++|+  .   ...+.....+...+..+.|++ +++.+
T Consensus        92 ~~~~~~~~~~~~~~~i~~~~~~---~~~l~~-----~~~d~~i~~~d--~---~~~~~~~~~~~~~v~~~~~~~~~~~~l  158 (313)
T 3odt_A           92 SGEDPLYTLIGHQGNVCSLSFQ---DGVVIS-----GSWDKTAKVWK--E---GSLVYNLQAHNASVWDAKVVSFSENKF  158 (313)
T ss_dssp             TTSCC-CEECCCSSCEEEEEEE---TTEEEE-----EETTSEEEEEE--T---TEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred             CCCCcccchhhcccCEEEEEec---CCEEEE-----EeCCCCEEEEc--C---CcEEEecccCCCceeEEEEccCCCCEE
Confidence            32   12233455678888884   334443     24567899999  3   677777888888899999988 77776


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-  234 (434)
                      ++..   .|.....|         + .+.....+...+...|.+++|+|++. |+  ++..++.+.+||++ .+.+..+ 
T Consensus       159 ~~~~---~d~~i~i~---------d-~~~~~~~~~~~~~~~i~~~~~~~~~~-~~--~~~~dg~i~i~d~~~~~~~~~~~  222 (313)
T 3odt_A          159 LTAS---ADKTIKLW---------Q-NDKVIKTFSGIHNDVVRHLAVVDDGH-FI--SCSNDGLIKLVDMHTGDVLRTYE  222 (313)
T ss_dssp             EEEE---TTSCEEEE---------E-TTEEEEEECSSCSSCEEEEEEEETTE-EE--EEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEE---CCCCEEEE---------e-cCceEEEEeccCcccEEEEEEcCCCe-EE--EccCCCeEEEEECCchhhhhhhh
Confidence            5432   33333332         2 12212222333578999999999997 54  57789999999996 4455554 


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                       |...+++++|+|+| .|++++   .+|.|++||+.+++.+..+..+  .+..++|+|+|+ +++++.      |+.|+|
T Consensus       223 ~~~~~i~~~~~~~~~-~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~------dg~i~i  291 (313)
T 3odt_A          223 GHESFVYCIKLLPNG-DIVSCG---EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS------DNLVRI  291 (313)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEE---TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET------TSCEEE
T ss_pred             cCCceEEEEEEecCC-CEEEEe---cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC------CCcEEE
Confidence             78899999999999 577777   5679999999999888888776  566799999999 567888      999999


Q ss_pred             EeecCc
Q 013871          312 FHHNGS  317 (434)
Q Consensus       312 w~~~g~  317 (434)
                      |++...
T Consensus       292 w~~~~~  297 (313)
T 3odt_A          292 FSQEKS  297 (313)
T ss_dssp             EESCGG
T ss_pred             EeCCCC
Confidence            999654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=3.3e-27  Score=227.50  Aligned_cols=274  Identities=13%  Similarity=0.093  Sum_probs=199.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++  .+..+..+.   ..+.+++|+||+++|+++. ++.|++|++.
T Consensus        11 i~~~~~s~~~~~l~~~~-----~d~~v~i~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEeCCCCcEEeeeeecCCC---CcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            78999999999999988     78999999999987  777776543   6777999999999999885 6799999987


Q ss_pred             CCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc---eee-eeecccceeEEEECCC
Q 013871           79 DFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP---LAR-RSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~---i~~-~~~~~~~~~~~~ws~~  152 (434)
                      ........  ..+...|.++.|+|+ +..+++.     +..+.|++|++..   ...   ... ...+...+..+.|+|+
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~d~~v~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~  153 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQ---ENDWWVCKHIKKPIRSTVLSLDWHPN  153 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEET---TTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             CCeeeeeEEeecCCCceeEEEECCC-CCEEEEE-----eCCCEEEEEEecC---CCcceeeeeeecccCCCeeEEEEcCC
Confidence            64321222  224457999999998 4555543     3457899999977   332   122 2335678899999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEe----------------eCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEc
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLT----------------TDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~----------------~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g  215 (434)
                      |..+++..   .|...+       +|.+.                .... .....+ .+.+.|.+++|+|+++.|+  ++
T Consensus       154 ~~~l~~~~---~dg~i~-------~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~  220 (372)
T 1k8k_C          154 SVLLAAGS---CDFKCR-------IFSAYIKEVEERPAPTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANGSRVA--WV  220 (372)
T ss_dssp             SSEEEEEE---TTSCEE-------EEECCCTTTSCCCCCBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSSSEEE--EE
T ss_pred             CCEEEEEc---CCCCEE-------EEEcccccccccccccccccccchh-hheEecCCCCCeEEEEEECCCCCEEE--EE
Confidence            99765532   333332       23321                0111 222223 3578999999999999888  46


Q ss_pred             cCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC--CEE--E--------------
Q 013871          216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD--GKQ--L--------------  274 (434)
Q Consensus       216 ~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~--~~~--i--------------  274 (434)
                      ..++.|.+||++ ...+..+  +..++++++|+|+|++|+++    .+|.|++||+.+  ++.  +              
T Consensus       221 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (372)
T 1k8k_C          221 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG----HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  296 (372)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE----TTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             eCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE----eCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence            788999999996 4455554  67789999999999988866    346999999987  421  1              


Q ss_pred             ----------------------EEe-eCC--CceEEEEC-CCC---CEEEEEEcCCceeeCCcEEEEeec
Q 013871          275 ----------------------GTT-RAE--CSVTSEWS-PDG---RYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       275 ----------------------~~~-~~~--~~~~~~ws-pdg---~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                                            ..+ .+|  .+..++|+ ++|   .+|++++.      |+.|+||++.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~------Dg~i~~W~~~  360 (372)
T 1k8k_C          297 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVR  360 (372)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHH
T ss_pred             chhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecC------CCceEEEEec
Confidence                                  112 234  56668866 777   99999999      9999999984

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=3.7e-27  Score=226.44  Aligned_cols=276  Identities=12%  Similarity=0.133  Sum_probs=187.2

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC---------CC--CceeeeeecCCeeE
Q 013871           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD---------FP--KGILYRLRVPGVAA   95 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~---------~~--~~~~~~~~~~~v~~   95 (434)
                      ..+.|++......    .   +...+.+++|||||++|++++++++++||...         ..  .......+..+|.+
T Consensus        15 ~~r~w~~~~~~~~----~---~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   87 (344)
T 4gqb_B           15 AAREWNLPPNAPA----C---MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD   87 (344)
T ss_dssp             --------CCSCS----S---CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEE
T ss_pred             cccccCCCCCCcc----c---ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEE
Confidence            4567876544321    1   11345689999999999999887877776311         00  00111223457999


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee----eecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013871           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR----SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY  171 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~----~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~  171 (434)
                      ++|+|+ +. +++     .+.++.|+||++.+   ++.+...    ..|...+.++.|+|+|+.|+..   ..|.+.+.|
T Consensus        88 ~~~s~d-~~-l~~-----~s~dg~v~lWd~~~---~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iw  154 (344)
T 4gqb_B           88 LTWVGE-RG-ILV-----ASDSGAVELWELDE---NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVW  154 (344)
T ss_dssp             EEEETT-TE-EEE-----EETTSEEEEEEECT---TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEE
T ss_pred             EEEeCC-Ce-EEE-----EECCCEEEEEeccC---CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEE
Confidence            999997 33 332     24567999999987   4444332    3567788999999999986543   245554433


Q ss_pred             ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe----CCcCeeEEEECC
Q 013871          172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----GSGPYNTVRWNP  246 (434)
Q Consensus       172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~----~~~~~~~i~~SP  246 (434)
                               ++...........+.+.|.+++|+|++..+++ ++..|+.|++||++. +.+..+    +...+++++|+|
T Consensus       155 ---------d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p  224 (344)
T 4gqb_B          155 ---------DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP  224 (344)
T ss_dssp             ---------ETTTTEEEEEECCCSSCEEEEEECSSCTTEEE-EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred             ---------ECCCCcEEEEEcCcCCceEEEEecCCCCCcee-eeccccccccccccccceeeeeecceeeccceeeeecC
Confidence                     33333222222235789999999999875443 578899999999964 444444    355688999999


Q ss_pred             CC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEcCCceeeCCcEEEEeecCceeee-
Q 013871          247 KG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLFFK-  321 (434)
Q Consensus       247 ~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~~prl~~D~~i~iw~~~g~~~~~-  321 (434)
                      ++ ++|++|+   .+|.|+|||+++++++..+.+|  .+..++|+||| ++|++++.      |+.|+|||.....+.. 
T Consensus       225 ~~~~~l~sg~---~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~------D~~i~vwd~~~~~~~~~  295 (344)
T 4gqb_B          225 QQSEVFVFGD---ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE------DCSLAVLDSSLSELFRS  295 (344)
T ss_dssp             SCTTEEEEEE---TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET------TSCEEEECTTCCEEEEE
T ss_pred             CCCcceEEec---cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC------CCeEEEEECCCCcEEEE
Confidence            65 5777777   5679999999999998888877  56679999998 57889998      9999999997654443 


Q ss_pred             -eecccceeeEEEcCCCCCCC
Q 013871          322 -KMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       322 -~~~~~~~~~~w~p~~~~~~~  341 (434)
                       .+.+.+..++|+|++..++.
T Consensus       296 ~~H~~~V~~v~~sp~~~~lla  316 (344)
T 4gqb_B          296 QAHRDFVRDATWSPLNHSLLT  316 (344)
T ss_dssp             CCCSSCEEEEEECSSSTTEEE
T ss_pred             cCCCCCEEEEEEeCCCCeEEE
Confidence             35578999999999988764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=2.7e-27  Score=227.25  Aligned_cols=276  Identities=10%  Similarity=0.091  Sum_probs=199.6

Q ss_pred             cceEEecCC---C-cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC--cCCCCCCeeeecCC----CcEEEEe-cCC
Q 013871            2 LLLLTCLRV---G-LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN--MTKTTWPSIRFSSD----EAVACRM-ATN   70 (434)
Q Consensus         2 V~~l~fSP~---g-~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~--~~~~~~~~~~~S~d----~~~la~~-~~~   70 (434)
                      |++|+|||+   + .++++..     .++.|+|||+.+++.+..+....  .+...+.+++|+|+    +.+|+++ .++
T Consensus        21 v~~i~~~p~~~~~~~~~~~~~-----~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           21 LFGVQFNWHSKEGDPLVFATV-----GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             EEEEEECTTCCTTSCEEEEEE-----ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             eEEEEEecccCCCCceEEEEC-----CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            789999994   3 3344444     35699999999888776665432  13356779999999    6688887 567


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---eecccceeEE
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---SFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---~~~~~~~~~~  147 (434)
                      .|++|++...........+...|.++.|+|..+..+++.     +.++.|++|++..   ++.+...   ..+...+..+
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSV-----SKDHALRLWNIQT---DTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEE-----ETTSCEEEEETTT---TEEEEEECSTTSCSSCEEEE
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEE-----eCCCeEEEEEeec---CeEEEEecccccccCceeEE
Confidence            999999987654444444667899999999435666542     4467899999987   6666665   5678889999


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee----------------------------eeecCCCCCeE
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG----------------------------LVPLRKEGPVH  199 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~----------------------------~v~l~~~~~i~  199 (434)
                      .|+|+|..|+...   .|....         .+++......                            .....+...|.
T Consensus       168 ~~~~~~~~l~~~~---~dg~i~---------i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  235 (366)
T 3k26_A          168 DYDLLGEKIMSCG---MDHSLK---------LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD  235 (366)
T ss_dssp             EECTTSSEEEEEE---TTSCEE---------EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred             EECCCCCEEEEec---CCCCEE---------EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence            9999999875532   333333         2222221100                            00011578899


Q ss_pred             EEEECcCCCEEEEEEccCCCeEEEEecccc---------------eeEEe--CCcCeeEEEECCC--CCeEEEEecCCCC
Q 013871          200 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---------------PILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLP  260 (434)
Q Consensus       200 ~v~wspdg~~~av~~g~~~~~v~l~d~~~~---------------~~~~~--~~~~~~~i~~SP~--g~~l~~~~~~~~~  260 (434)
                      +++|+  ++.++  ++..++.|.+||++..               .+..+  +...+++++|+|+  |++|++++   .+
T Consensus       236 ~~~~~--~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~---~d  308 (366)
T 3k26_A          236 CVRWL--GDLIL--SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN---QV  308 (366)
T ss_dssp             EEEEE--TTEEE--EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC---TT
T ss_pred             EEEEc--CCEEE--EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe---cC
Confidence            99998  66666  5778999999998532               13333  6788999999999  99999998   56


Q ss_pred             CeEEEEEccCCE----EEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          261 GDMAFWDYVDGK----QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       261 g~i~iwd~~~~~----~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |.|++||+.+++    .+..+..+    .+..++|+|||++|++++.      |+.|+|||+.
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iwd~~  365 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD------DASIWRWDRL  365 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSEEEEEEC-
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC------CCEEEEEEec
Confidence            799999999864    44455543    5667999999999999999      9999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.96  E-value=9.6e-26  Score=217.37  Aligned_cols=274  Identities=12%  Similarity=0.143  Sum_probs=204.9

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +..+.+..+.   ..+.+++|+||+++|++++ |++|+|||............+...|..++|+|+ +..+++     ++
T Consensus        55 ~~~~~l~gH~---~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~-g~~las-----g~  125 (354)
T 2pbi_B           55 KTRRTLKGHG---NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS-GCAIAC-----GG  125 (354)
T ss_dssp             CEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTT-SSEEEE-----ES
T ss_pred             EEEEEecCCC---CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCC-CCEEEE-----ee
Confidence            3456666543   6777999999999999985 679999998776554445556667999999999 555553     46


Q ss_pred             CCceEEEEEcCCCC---CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871          116 SPASVQIYACGKDL---QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       116 ~~~~v~i~~~~~~~---~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      .++.+++|++....   ..........|...+..+.|+|++..|+..   ..|.+.+.|         ++........-.
T Consensus       126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lw---------d~~~~~~~~~~~  193 (354)
T 2pbi_B          126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALW---------DVESGQLLQSFH  193 (354)
T ss_dssp             TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEE---------ETTTCCEEEEEE
T ss_pred             CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEE---------eCCCCeEEEEEc
Confidence            67899999986421   023345566788888999999999986543   244444433         332221111112


Q ss_pred             CCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          193 RKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       193 ~~~~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      .+...|.+++|+|  +|+.|+  +|..|+.|++||++. ..+..+  |...+++++|+|+|++|++++   .+|.|++||
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~--sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~v~lwd  268 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFV--SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS---DDATCRLYD  268 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEE
T ss_pred             CCCCCeEEEEEEeCCCCCEEE--EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEE
Confidence            3567899999988  466777  688899999999964 444444  788999999999999999999   567999999


Q ss_pred             ccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCC
Q 013871          268 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       268 ~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~  340 (434)
                      +.+.+.+..+..+    .+..++|+|+|++|++++.      |+.|+|||+ +|..+...  +...+..++|+|++..++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~------d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN------DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET------TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC------CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence            9998877776543    4567999999999999999      999999998 56655443  557899999999988777


Q ss_pred             CC
Q 013871          341 GD  342 (434)
Q Consensus       341 ~~  342 (434)
                      +.
T Consensus       343 sg  344 (354)
T 2pbi_B          343 SG  344 (354)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=4e-27  Score=229.23  Aligned_cols=290  Identities=12%  Similarity=0.154  Sum_probs=213.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCC
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGS  104 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  104 (434)
                      ..+.+|+..+..+.+++.++.   ..+.+++|+||+++|++++ |++|+|||............+...|.+++|+|+ +.
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~---~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~-g~  121 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHS---GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN-GQ  121 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCS---SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTT-SS
T ss_pred             ccccccccceeEEeecccccc---cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCC-CC
Confidence            445667777777888887654   6778999999999999985 679999999876554555667778999999999 56


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeeccee--EE
Q 013871          105 HVAVFVPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK--LN  178 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~  178 (434)
                      .+++     ++.++.+++|++....    ..........|...+..+.|+|++...++.  ...|.+.+.|.-...  +.
T Consensus       122 ~las-----~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          122 SVAC-----GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             EEEE-----CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEE
T ss_pred             EEEE-----eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEE
Confidence            6653     5678899999986421    012334456677778888999986654333  335555554432111  00


Q ss_pred             EEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecc--cceeEEe--CCcCeeEEEECCCCCeEEE
Q 013871          179 YLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~--~~~~~~~--~~~~~~~i~~SP~g~~l~~  253 (434)
                      .+   +   ...+..+...|.+++|+| ++..|+  +|..|+.|++||++  ...+..+  |.+.+++++|+|+|++|++
T Consensus       195 ~~---~---~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s  266 (380)
T 3iz6_a          195 IF---G---SEFPSGHTADVLSLSINSLNANMFI--SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT  266 (380)
T ss_dssp             EE---C---CCSSSSCCSCEEEEEECSSSCCEEE--EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred             Ee---e---cccCCCCccCeEEEEeecCCCCEEE--EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence            00   0   001123567899999987 677777  68889999999986  2444444  7889999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC---------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-  322 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~---------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~-  322 (434)
                      ++   .||.|+|||+.+++.+..+..+         .+..++|+|+|++|++++.      |+.|+|||.. ++.+... 
T Consensus       267 ~s---~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~------dg~i~vwd~~~~~~~~~~~  337 (380)
T 3iz6_a          267 GS---DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS------NGDCYVWDTLLAEMVLNLG  337 (380)
T ss_dssp             EC---SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT------TSCEEEEETTTCCEEEEEC
T ss_pred             Ec---CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC------CCCEEEEECCCCceEEEEe
Confidence            98   6679999999999888877543         2567999999999999999      9999999984 4444332 


Q ss_pred             -----ecccceeeEEEcCCCCCCCCc
Q 013871          323 -----MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 -----~~~~~~~~~w~p~~~~~~~~~  343 (434)
                           +...+.++.|+|++..+++..
T Consensus       338 ~~~~~h~~~v~~l~~s~dg~~l~sgs  363 (380)
T 3iz6_a          338 TLQNSHEGRISCLGLSSDGSALCTGS  363 (380)
T ss_dssp             CSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred             cccCCCCCceEEEEECCCCCEEEEee
Confidence                 456799999999998877753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9e-27  Score=250.57  Aligned_cols=311  Identities=11%  Similarity=0.095  Sum_probs=204.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+||| |++|++++     .|+.|+|||+.+++++..+...    ..+.+++|+||+++|+++. +++|++||+...
T Consensus        61 V~~l~fsp-g~~L~S~s-----~D~~v~lWd~~~~~~~~~~~~~----~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~  130 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVIN-----AKDTVYVLSLYSQKVLTTVFVP----GKITSIDTDASLDWMLIGLQNGSMIVYDIDRD  130 (902)
T ss_dssp             EEEEEEET-TTEEEEEE-----TTCEEEEEETTTCSEEEEEECS----SCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred             EEEEEEcC-CCEEEEEE-----CcCeEEEEECCCCcEEEEEcCC----CCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence            78999999 99999999     8999999999999999888633    5567999999999999984 689999998764


Q ss_pred             CCce-----------eeeeecCCeeEEEEeCCC-----------------------------------------------
Q 013871           81 PKGI-----------LYRLRVPGVAAFEVSKAP-----------------------------------------------  102 (434)
Q Consensus        81 ~~~~-----------~~~~~~~~v~~~~~sp~~-----------------------------------------------  102 (434)
                      ....           ....|...|.+++|+|++                                               
T Consensus       131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h  210 (902)
T 2oaj_A          131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR  210 (902)
T ss_dssp             EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred             ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCccccccccccc
Confidence            3210           001122345555555531                                               


Q ss_pred             ------------CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------------------cccceeEEEEC--
Q 013871          103 ------------GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------------------FRCSTVQLNWN--  150 (434)
Q Consensus       103 ------------~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------------------~~~~~~~~~ws--  150 (434)
                                  +.+++.     .+.++.|++|++.+   ++.+..+++                  +...+..+.|+  
T Consensus       211 ~~~V~~v~fspdg~~las-----gs~Dg~i~lWd~~~---g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~  282 (902)
T 2oaj_A          211 TPKVIQSLYHPNSLHIIT-----IHEDNSLVFWDANS---GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE  282 (902)
T ss_dssp             CCCEEEEEECTTSSEEEE-----EETTCCEEEEETTT---CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred             CCCeEEEEEcCCCCEEEE-----EECCCeEEEEECCC---CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence                        222221     24567899999977   555543322                  13357789994  


Q ss_pred             --CCCCeEEEEEEeccc---ccCceee-c---------------------------------------------------
Q 013871          151 --RGSTGLLAVAQSDVD---KTNQSYY-G---------------------------------------------------  173 (434)
Q Consensus       151 --~~G~~l~~~~~~~~d---~~~~~~~-g---------------------------------------------------  173 (434)
                        |++..+++..+.+.+   .....+. +                                                   
T Consensus       283 ~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~  362 (902)
T 2oaj_A          283 NNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH  362 (902)
T ss_dssp             SSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred             CCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence              555455444322110   0111110 0                                                   


Q ss_pred             ----------ceeEEEEeeCCcceeee----------------------------------------ecC-CCCCeEEEE
Q 013871          174 ----------ESKLNYLTTDGTHEGLV----------------------------------------PLR-KEGPVHDVQ  202 (434)
Q Consensus       174 ----------~~~l~~l~~~~~~~~~v----------------------------------------~l~-~~~~i~~v~  202 (434)
                                ...|+.+++..+.....                                        ++. +...+.+++
T Consensus       363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~  442 (902)
T 2oaj_A          363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL  442 (902)
T ss_dssp             SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred             CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence                      01122332211100000                                        000 112334456


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEeccccee-----EE---------eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKKCRPI-----LE---------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~~~~~-----~~---------~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      |+|+|+.|+  +|..|++|++||+....+     ..         -|...+++++|||||++||+|+   .+|+|+|||+
T Consensus       443 ~spdg~~la--Sgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs---~DgtV~lwd~  517 (902)
T 2oaj_A          443 PAEYGTAFI--TGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSI---ETGDVVLFKY  517 (902)
T ss_dssp             CCSEEEEEE--EEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEE---TTSCEEEEEE
T ss_pred             ccccCcEEE--EecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEe---cCcEEEEEEe
Confidence            788888887  688899999999864322     11         3567899999999999999999   6679999998


Q ss_pred             cCC---------------------------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCC
Q 013871          269 VDG---------------------------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       269 ~~~---------------------------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~p  301 (434)
                      .++                                             +++..+.+|  .++.++||||| +|++|+.  
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~--  594 (902)
T 2oaj_A          518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA--  594 (902)
T ss_dssp             EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET--
T ss_pred             cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC--
Confidence            865                                             235666655  66779999999 9999999  


Q ss_pred             ceeeCCcEEEEeecCcee-ee--------eecccceeeEEE-----cCC---CCCCCC
Q 013871          302 RLQIDNGIKIFHHNGSLF-FK--------KMFDKLFQAEWK-----PVS---PDKFGD  342 (434)
Q Consensus       302 rl~~D~~i~iw~~~g~~~-~~--------~~~~~~~~~~w~-----p~~---~~~~~~  342 (434)
                          |+.|+|||+.+..+ +.        .+...++.++|.     |++   ..|++.
T Consensus       595 ----D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg  648 (902)
T 2oaj_A          595 ----AGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG  648 (902)
T ss_dssp             ----TSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred             ----CCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence                99999999987643 21        233459999999     875   455543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=3.5e-26  Score=222.76  Aligned_cols=281  Identities=11%  Similarity=0.082  Sum_probs=199.1

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec----------CcCCCCCCeeeecC-CCcEEEEec-
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK----------NMTKTTWPSIRFSS-DEAVACRMA-   68 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~----------~~~~~~~~~~~~S~-d~~~la~~~-   68 (434)
                      |.+|+||| +|++|++++     .|+.|+|||+.+++....+...          ..+...+.+++|+| ++.+|+++. 
T Consensus        46 v~~~~~s~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           46 INTLDIEPVEGRYMLSGG-----SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             EEEEEECTTTCCEEEEEE-----TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             EEEEEEecCCCCEEEEEc-----CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            78999999 999999999     8999999999988654443311          11446778999999 777888775 


Q ss_pred             CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871           69 TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ++.|++|++......... .....+..+.++|.+.  ..+++-     +..+.|++|++..   +..+.....+...+..
T Consensus       121 d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~d~~~---~~~~~~~~~~~~~v~~  191 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVF-NFEETVYSHHMSPVSTKHCLVAVG-----TRGPKVQLCDLKS---GSCSHILQGHRQEILA  191 (408)
T ss_dssp             TSEEEEEETTTTEEEEEE-ECSSCEEEEEECSSCSSCCEEEEE-----ESSSSEEEEESSS---SCCCEEECCCCSCEEE
T ss_pred             CCeEEEeeCCCCccceec-cCCCceeeeEeecCCCCCcEEEEE-----cCCCeEEEEeCCC---cceeeeecCCCCcEEE
Confidence            789999999875432222 2345688899998643  244432     3457899999987   6777778888889999


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee----------------cCCCCCeEEEEECcCCCEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP----------------LRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~----------------l~~~~~i~~v~wspdg~~~  210 (434)
                      +.|+|+|.++++.++  .|...+.         +++.........                ..+.+.|.+++|+|+++.|
T Consensus       192 ~~~~~~~~~ll~~~~--~dg~i~i---------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          192 VSWSPRYDYILATAS--ADSRVKL---------WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EEECSSCTTEEEEEE--TTSCEEE---------EETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             EEECCCCCcEEEEEc--CCCcEEE---------EECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            999999997655433  3333332         222211111111                2346889999999999999


Q ss_pred             EEEEccCCCeEEEEeccccee-EEe-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          211 AVVYGFMPASATIFNKKCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~~~~-~~~-------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +  ++..++.+.+||++.... ..+       .............+..+++++   .+|.|++||+.+++.+..+.+|  
T Consensus       261 ~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~  335 (408)
T 4a11_B          261 L--TVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP---YGSTIAVYTVYSGEQITMLKGHYK  335 (408)
T ss_dssp             E--EEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE---ETTEEEEEETTTCCEEEEECCCSS
T ss_pred             E--EecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe---cCCEEEEEECcCCcceeeeccCCC
Confidence            8  467789999999964332 211       111222223333345555565   3469999999999999999876  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      .+..++|+|||++|++++.      |+.|+||++....
T Consensus       336 ~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~  367 (408)
T 4a11_B          336 TVDCCVFQSNFQELYSGSR------DCNILAWVPSLYE  367 (408)
T ss_dssp             CEEEEEEETTTTEEEEEET------TSCEEEEEECC--
T ss_pred             eEEEEEEcCCCCEEEEECC------CCeEEEEeCCCCC
Confidence            5667999999999999999      9999999996543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=5.4e-27  Score=226.42  Aligned_cols=292  Identities=11%  Similarity=0.098  Sum_probs=179.8

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-------CCeEEEEeC
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-------TNEIQFFDT   77 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-------~~~i~v~~~   77 (434)
                      +.+++++.|+.+.+      +.....|++....+    .   .|...+.+++|||||++||+++       ++.|++|+.
T Consensus        11 ~d~g~~~~~~~~~g------~~~~~~w~~p~~~p----~---~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~   77 (357)
T 4g56_B           11 VDLGTENLYFQSNG------SSKGSAWGRPVTAP----A---CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD   77 (357)
T ss_dssp             ------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS
T ss_pred             CCCCccceEEecCC------CccccccCCCCCCc----c---cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC
Confidence            45666666665433      45678888754332    1   1336677999999999999986       457999987


Q ss_pred             CCCCCc----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee----eeeecccceeEEEE
Q 013871           78 TDFPKG----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA----RRSFFRCSTVQLNW  149 (434)
Q Consensus        78 ~~~~~~----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~----~~~~~~~~~~~~~w  149 (434)
                      ......    .....+..+|.+++|+|+ +.+++.      +.++.|+||++.+   ++.+.    ....|...+.++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~------s~dg~v~lWd~~~---~~~~~~~~~~~~~h~~~V~~v~~  147 (357)
T 4g56_B           78 PEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVA------SDSGAVELWEILE---KESLLVNKFAKYEHDDIVKTLSV  147 (357)
T ss_dssp             CC---CGGGCSEEEECSSCEEEEEEETT-TEEEEE------ETTSCEEEC-----------CCCCEEECCCSSCEEEEEE
T ss_pred             CCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEE------ECCCEEEEeeccc---cceeEEEeeccCCCCCCEEEEEE
Confidence            654321    112234567999999998 444432      3457899999977   33322    22346678899999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      +|+|+.|+..   ..|.+.+.|         +.... .....+ .+.+.|.+++|+|++..+++ ++..|+.|++||++.
T Consensus       148 spdg~~l~sg---s~dg~v~iw---------d~~~~-~~~~~~~~h~~~v~~v~~s~~~~~~~~-s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          148 FSDGTQAVSG---GKDFSVKVW---------DLSQK-AVLKSYNAHSSEVNCVAACPGKDTIFL-SCGEDGRILLWDTRK  213 (357)
T ss_dssp             CSSSSEEEEE---ETTSCEEEE---------ETTTT-EEEEEECCCSSCEEEEEECTTCSSCEE-EEETTSCEEECCTTS
T ss_pred             CCCCCEEEEE---eCCCeEEEE---------ECCCC-cEEEEEcCCCCCEEEEEEccCCCceee-eeccCCceEEEECCC
Confidence            9999986543   244444433         33332 222222 24789999999999875443 577799999999964


Q ss_pred             c-eeEEe----CCcCeeEEEECCCC-CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCC-CEEEEEEc
Q 013871          229 R-PILEL----GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDG-RYFMTATT  299 (434)
Q Consensus       229 ~-~~~~~----~~~~~~~i~~SP~g-~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg-~~l~tas~  299 (434)
                      . .+..+    +...+++++|+|++ .+|++|+   .++.|++||+.+++.+..+.++  .+..++|+|+| ++|++++.
T Consensus       214 ~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~  290 (357)
T 4g56_B          214 PKPATRIDFCASDTIPTSVTWHPEKDDTFACGD---ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE  290 (357)
T ss_dssp             SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE---SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET
T ss_pred             CceeeeeeeccccccccchhhhhcccceEEEee---cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC
Confidence            3 33222    46678999999986 5777777   5579999999999888777766  56679999998 57888998


Q ss_pred             CCceeeCCcEEEEeecCce-eee-eecccceeeEEEcC-CCCCCCC
Q 013871          300 APRLQIDNGIKIFHHNGSL-FFK-KMFDKLFQAEWKPV-SPDKFGD  342 (434)
Q Consensus       300 ~prl~~D~~i~iw~~~g~~-~~~-~~~~~~~~~~w~p~-~~~~~~~  342 (434)
                            |+.|+|||+.... +.. .+...+..++|+|. +..+++.
T Consensus       291 ------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          291 ------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             ------TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred             ------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEE
Confidence                  9999999996544 333 25568999999995 4444443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=7.9e-27  Score=259.88  Aligned_cols=314  Identities=11%  Similarity=0.101  Sum_probs=231.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc----------CCCCCCeeeecCCCcEEEEecCCe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM----------TKTTWPSIRFSSDEAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~----------~~~~~~~~~~S~d~~~la~~~~~~   71 (434)
                      |++++|||+|++|++++     .|+.|++||+.+++.+..+.....          ....+.++.|+|||++++.+.++.
T Consensus       746 v~~~~~sp~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          746 VNHCRFSPDDELLASCS-----ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             EEEEEECSSTTEEEEEE-----SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             EEEEEEecCCCEEEEEE-----CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence            67899999999999999     899999999999988777653221          112566899999999999999999


Q ss_pred             EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      |.+|+........... .+...|..++|+|+ +..+++     .+..+.|++|++.+   +..+.....|...+..+.|+
T Consensus       821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~h~~~v~~v~~s  891 (1249)
T 3sfz_A          821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-DHLAVI-----ALSQYCVELWNIDS---RLKVADCRGHLSWVHGVMFS  891 (1249)
T ss_dssp             EEEEETTTCCEEEEEECSSSSCCCEEEECSS-TTEEEE-----ECSSSCEEEEETTT---TEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEEecCCCceeEEcCCCCCceEEEEEcCC-CCEEEE-----EeCCCeEEEEEcCC---CceeeecCCCccceEEEEEC
Confidence            9999998765432222 34567999999998 455554     24567899999988   77888888888899999999


Q ss_pred             CCCCeEEEEEEecccccCceeecc--------------------------------------------------------
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGE--------------------------------------------------------  174 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~--------------------------------------------------------  174 (434)
                      |+|..++...   .|...+.|.-.                                                        
T Consensus       892 pdg~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          892 PDGSSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             TTSSEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             CCCCEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            9999865432   34444333210                                                        


Q ss_pred             --------------eeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce----------
Q 013871          175 --------------SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP----------  230 (434)
Q Consensus       175 --------------~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~----------  230 (434)
                                    ..++.++............+.+.|.+++|+|+|+.++  +++.++.+.+||+....          
T Consensus       969 ~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1046 (1249)
T 3sfz_A          969 LSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI--SSSEDSVIQVWNWQTGDYVFLQAHQET 1046 (1249)
T ss_dssp             ECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEE--EECSSSBEEEEETTTTEEECCBCCSSC
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEE--EEcCCCEEEEEECCCCceEEEecCCCc
Confidence                          0111222212111111123467889999999999888  46677788888754211          


Q ss_pred             -------------------------------eE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          231 -------------------------------IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       231 -------------------------------~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                                                     +.  ..|.+.+.+++|+|+|++|++++   .+|.|++||+.+++.+..+
T Consensus      1047 v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s---~d~~v~iwd~~~~~~~~~l 1123 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS---ADKTAKIWSFDLLSPLHEL 1123 (1249)
T ss_dssp             EEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC---CSSCCCEECSSSSSCSBCC
T ss_pred             EEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc---CCCcEEEEECCCcceeeee
Confidence                                           11  12566788899999999999988   5679999999988877777


Q ss_pred             eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCCCc
Q 013871          278 RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       278 ~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      .+|  .+..++|||||++|++++.      |+.|+||++. |+.+...           +...+..++|+|++..++...
T Consensus      1124 ~~h~~~v~~~~~s~dg~~lat~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1124 KGHNGCVRCSAFSLDGILLATGDD------NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEET------TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             ccCCCcEEEEEECCCCCEEEEEeC------CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            766  5667999999999999999      9999999995 5544332           445689999999998887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.95  E-value=3e-26  Score=220.05  Aligned_cols=275  Identities=13%  Similarity=0.120  Sum_probs=194.9

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecC
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      +++.++..+.  ...+.+++|+|||++||+++ |++|+||++.........   ..|...|.+++|+|+ +.+++.    
T Consensus         6 ~~~~~~~~h~--~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~l~s----   78 (345)
T 3fm0_A            6 VLLGRVPAHP--DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS----   78 (345)
T ss_dssp             EEEEEECCST--TSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT-SSEEEE----
T ss_pred             EEeeeecCCC--CCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC-CCEEEE----
Confidence            4556665543  12555899999999999985 679999998764311111   234567999999998 555654    


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-
Q 013871          113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-  191 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-  191 (434)
                       .+.++.++||++.... ...+.....|...+..+.|+|+|+.|+..   ..|.+.+       +|.+........... 
T Consensus        79 -~s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~-------iwd~~~~~~~~~~~~~  146 (345)
T 3fm0_A           79 -ASFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVW-------VWEVDEEDEYECVSVL  146 (345)
T ss_dssp             -EETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEE-------EEEECTTSCEEEEEEE
T ss_pred             -EECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEE-------EEECCCCCCeEEEEEe
Confidence             3456789999987621 23456667788899999999999986543   2444444       333322221122222 


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ..+...|.+++|+|+++.|+  ++..|+.|++||.+...   ...+  |...+++++|+|+|++|++++   .||.|+||
T Consensus       147 ~~h~~~v~~~~~~p~~~~l~--s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s---~D~~v~iW  221 (345)
T 3fm0_A          147 NSHTQDVKHVVWHPSQELLA--SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS---DDRTVRIW  221 (345)
T ss_dssp             CCCCSCEEEEEECSSSSCEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEE
T ss_pred             cCcCCCeEEEEECCCCCEEE--EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe---CCCeEEEe
Confidence            23578899999999999888  57789999999986542   2333  788999999999999999999   56799999


Q ss_pred             EccC---------------CEEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce---------e
Q 013871          267 DYVD---------------GKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F  319 (434)
Q Consensus       267 d~~~---------------~~~i~~~~~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~---------~  319 (434)
                      |...               .+++..+.+ |  .+..++|+|++..|++++.      |+.|+||+.....         .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~------d~~i~vw~~~~~~~~~~~~~~~~  295 (345)
T 3fm0_A          222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG------DDAIRVFQEDPNSDPQQPTFSLT  295 (345)
T ss_dssp             EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET------TSCEEEEEECTTSCTTSCCEEEE
T ss_pred             ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC------CCeEEEEEeCCCCCcceeeEEEE
Confidence            9632               134444443 3  5667999999999999999      9999999985431         1


Q ss_pred             ---eeeecccceeeEEEcCCCCCCC
Q 013871          320 ---FKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       320 ---~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         ...+...+..++|+|..+.++.
T Consensus       296 ~~~~~~h~~~V~~v~~~p~~~~~la  320 (345)
T 3fm0_A          296 AHLHQAHSQDVNCVAWNPKEPGLLA  320 (345)
T ss_dssp             EEETTSSSSCEEEEEECSSSTTEEE
T ss_pred             eeecccccCcEeEeEEeCCCceEEE
Confidence               1124567999999999865443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=226.17  Aligned_cols=273  Identities=12%  Similarity=0.156  Sum_probs=186.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-----------EEEEEeecCcC---------CCCCCeeeecCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-----------AVYQLFQKNMT---------KTTWPSIRFSSDE   61 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-----------~~~~~~~~~~~---------~~~~~~~~~S~d~   61 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++           .+..+..+...         ...+.+++|+|++
T Consensus        31 V~~v~~s~~g~~la~g~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           31 ISTVEFNHSGELLATGD-----KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             EEEEEECCCCCEEEEEc-----CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            78999999999999999     89999999998877           45666554200         1557799999998


Q ss_pred             --cEEEEe-cCCeEEEEeCCCCCCc----------------------------------------eeeeeecCCeeEEEE
Q 013871           62 --AVACRM-ATNEIQFFDTTDFPKG----------------------------------------ILYRLRVPGVAAFEV   98 (434)
Q Consensus        62 --~~la~~-~~~~i~v~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~   98 (434)
                        .+|+++ .|+.|++|++......                                        .....|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              666666 5789999997542110                                        001234557999999


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-------eeeecccceeEEEECCCC-CeEEEEEEecccccCce
Q 013871           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-------RRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-------~~~~~~~~~~~~~ws~~G-~~l~~~~~~~~d~~~~~  170 (434)
                      +|+ +..++.     + .++.|++|++...  ...+.       ....+...+..+.|+|+| ..|+.. +  .|...+ 
T Consensus       186 ~~~-~~~l~s-----~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-~--~dg~i~-  252 (447)
T 3dw8_B          186 NSD-YETYLS-----A-DDLRINLWHLEIT--DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-S--SKGTIR-  252 (447)
T ss_dssp             CTT-SSEEEE-----E-CSSEEEEEETTEE--EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-E--TTSCEE-
T ss_pred             cCC-CCEEEE-----e-CCCeEEEEECCCC--CceeeeeecccccccccCcceEEEEECCCCCcEEEEE-e--CCCeEE-
Confidence            998 555553     1 3689999999741  23332       234567788999999999 654432 2  333333 


Q ss_pred             eecceeEEEEeeCCccee---eeecC-CC------------CCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeE
Q 013871          171 YYGESKLNYLTTDGTHEG---LVPLR-KE------------GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL  232 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~---~v~l~-~~------------~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~  232 (434)
                              ++++......   ...+. +.            +.|.+++|+|+|+.|+.  +.. +.|++||++  ...+.
T Consensus       253 --------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          253 --------LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             --------EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSC
T ss_pred             --------EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccc
Confidence                    3333222110   11111 12            38999999999999884  555 899999996  34444


Q ss_pred             Ee--CCcC---------------eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----------------
Q 013871          233 EL--GSGP---------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------  279 (434)
Q Consensus       233 ~~--~~~~---------------~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----------------  279 (434)
                      .+  |...               +..++|+|+|++|++++   .+|.|+|||+.+++.+.....                
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS---YNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVC  398 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC---STTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEE
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEec---cCCEEEEEEcCCCcceeeeecccccccccccCCcccc
Confidence            44  3221               22399999999999998   567999999999876642211                


Q ss_pred             ------------------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          280 ------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       280 ------------------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                                        ..+..++|+|+|.+|++++.       +.+.||.
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~-------~~~~~~~  443 (447)
T 3dw8_B          399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT-------NNLYIFQ  443 (447)
T ss_dssp             CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS-------SCEEEEE
T ss_pred             ccCCcccccccccccccCCceeEEEECCCCCEEEEEec-------ceeeeec
Confidence                              13566999999999999885       4577875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=1.5e-25  Score=221.02  Aligned_cols=290  Identities=12%  Similarity=0.113  Sum_probs=208.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      +.+++|||++.++++.+     .++.|++||+.+++.+..+...  ..+...+.+++|++++++++++. ++.|++||+.
T Consensus       125 ~~~~~~s~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          125 PKSVRFIDNTRLAIPLL-----EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             BCCCEESSSSEEEEEBT-----TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEeCCCeEEEEeC-----CCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            45789999777777766     6788999999999987643321  11334566899999999999885 5899999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..........+...+..++|+|++ ..+.+.    ....+.|.+|++.+   ++.+..... ......+.|+|+|+.|++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~----~~~~~~i~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIR-DLVYCS----NWISEDISVIDRKT---KLEIRKTDK-IGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTT-TEEEEE----ETTTTEEEEEETTT---TEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCC-CEEEEE----ecCCCcEEEEECCC---CcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence            755333333445678999999984 444322    12456899999976   555554443 335778999999998776


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-CC
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GS  236 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-~~  236 (434)
                      ...... ...   .....|+.++..... ....+...+.+..++|+|+++.+++ ++..++.+.+||++.. .+..+ +.
T Consensus       271 ~~~~~~-~~~---~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~l~~-~~~~~~~v~v~d~~~~~~~~~~~~~  344 (433)
T 3bws_A          271 AQFSAS-NQE---SGGGRLGIYSMDKEK-LIDTIGPPGNKRHIVSGNTENKIYV-SDMCCSKIEVYDLKEKKVQKSIPVF  344 (433)
T ss_dssp             EEEESC-TTC---SCCEEEEEEETTTTE-EEEEEEEEECEEEEEECSSTTEEEE-EETTTTEEEEEETTTTEEEEEEECS
T ss_pred             EECCCC-ccc---cCCCeEEEEECCCCc-EEeeccCCCCcceEEECCCCCEEEE-EecCCCEEEEEECCCCcEEEEecCC
Confidence            542211 000   012245666654432 2222333457889999999988776 4677899999999744 34444 56


Q ss_pred             cCeeEEEECCCCCeEEEEecCCC------------CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCce
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNL------------PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~------------~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl  303 (434)
                      ..+.+++|+|+|++|++++.++.            +|.|++||..+++.+..+..+ .+..++|+|||++|++++..   
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---  421 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFL---  421 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETT---
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECC---
Confidence            77899999999999988875432            579999999999988888765 55669999999999988754   


Q ss_pred             eeCCcEEEEeecC
Q 013871          304 QIDNGIKIFHHNG  316 (434)
Q Consensus       304 ~~D~~i~iw~~~g  316 (434)
                        |+.|+||++++
T Consensus       422 --d~~i~v~~~~~  432 (433)
T 3bws_A          422 --DHQIRVYRRDG  432 (433)
T ss_dssp             --TTEEEEEEETT
T ss_pred             --CCeEEEEEecC
Confidence              99999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=8e-26  Score=212.37  Aligned_cols=236  Identities=12%  Similarity=0.175  Sum_probs=160.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|+|++     .|++|+|||+.++  +.+.++..+.   ..+.+++|+++  +++|++++ |++|++||
T Consensus        12 V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH~---~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGHE---GPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCCS---SCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEcccc---CCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            78999999999999999     8999999999743  5667776543   66779999874  88998885 68999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +..........+                                                 ..+...+..+.|+|+  |.
T Consensus        84 ~~~~~~~~~~~~-------------------------------------------------~~h~~~v~~v~~~p~~~g~  114 (297)
T 2pm7_B           84 EENGRWSQIAVH-------------------------------------------------AVHSASVNSVQWAPHEYGP  114 (297)
T ss_dssp             BSSSCBCCCEEE-------------------------------------------------CCCSSCEEEEEECCGGGCS
T ss_pred             cCCCceEEEEEe-------------------------------------------------ecCCCceeEEEeCcCCCCc
Confidence            865321000000                                                 012223345556665  44


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC-------------CCEEEEEEccCCCeE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-------------GSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd-------------g~~~av~~g~~~~~v  221 (434)
                      .|+..   ..|.+.+       +|.+.............+...|.+++|+|+             ++.|+  +|..|+.|
T Consensus       115 ~l~s~---s~d~~v~-------~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~--sgs~D~~v  182 (297)
T 2pm7_B          115 MLLVA---SSDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  182 (297)
T ss_dssp             EEEEE---ETTSEEE-------EEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEE--EEETTSCE
T ss_pred             EEEEE---ECCCcEE-------EEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEE--EEcCCCcE
Confidence            43322   1222222       222221111111112234678999999997             35666  68889999


Q ss_pred             EEEecccc-----eeEEe--CCcCeeEEEECCCC---CeEEEEecCCCCCeEEEEEccCCE---EEEEe--eCC--CceE
Q 013871          222 TIFNKKCR-----PILEL--GSGPYNTVRWNPKG---KFLCLAGFGNLPGDMAFWDYVDGK---QLGTT--RAE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~g---~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~--~~~--~~~~  284 (434)
                      ++||++..     ....+  |...+++++|+|++   ++|++++   .||.|+|||+++..   ....+  ..+  .+..
T Consensus       183 ~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s---~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~  259 (297)
T 2pm7_B          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  259 (297)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred             EEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE---CCCcEEEEEeCCCCCccceeeeecccCCCcEEE
Confidence            99998642     23334  78899999999995   7899998   56799999987642   11222  222  5566


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++|+|||++|++++.      |+.|+||+..
T Consensus       260 ~~~s~~g~~las~~~------D~~v~lw~~~  284 (297)
T 2pm7_B          260 ASWSLSGNVLALSGG------DNKVTLWKEN  284 (297)
T ss_dssp             EEECSSSCCEEEEET------TSCEEEEEEC
T ss_pred             EEECCCCCEEEEEcC------CCcEEEEEEC
Confidence            999999999999999      9999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=2.2e-27  Score=229.85  Aligned_cols=238  Identities=11%  Similarity=0.077  Sum_probs=163.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||+|++|++++     .|+.|+|||+.++  +.+..+..+   ...+.+++|+||+++|++++ |+.|++||+.
T Consensus        14 v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C           14 SYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDH---DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             CSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCC---SSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             EEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecC---CceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            78999999999999987     7899999999988  566666543   36777999999999999885 6799999998


Q ss_pred             CCC---CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cccceeEEEECCCCC
Q 013871           79 DFP---KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGST  154 (434)
Q Consensus        79 ~~~---~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~~~~~~~~ws~~G~  154 (434)
                      ...   .......+...|.+++|+|++ ..+++-     +.++.|++|++........+..... +...+..+.|+|+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  159 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVG-----SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV  159 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEE-----ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred             CCCceeeeeEecccCCceEEEEECCCC-CEEEEE-----ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence            754   222233455679999999984 444432     3457899999987211113455555 788899999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCC---------------cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDG---------------THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~---------------~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      .|+...   .|...+       +|.+....               .......+.+.+.|.+++|+|+|+.|+  ++..++
T Consensus       160 ~l~~~~---~d~~i~-------iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~--~~~~d~  227 (377)
T 3dwl_C          160 LLAAGC---ADRKAY-------VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALA--YAGHDS  227 (377)
T ss_dssp             EEEEEE---SSSCEE-------EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEE--EEETTT
T ss_pred             EEEEEe---CCCEEE-------EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEE--EEeCCC
Confidence            765532   343333       33332110               012222335678999999999999888  577899


Q ss_pred             eEEEEecccce-----eE--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          220 SATIFNKKCRP-----IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       220 ~v~l~d~~~~~-----~~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      .|++||++...     +.  ..|...+.+++|+|+|++|++++.+    .+.+|+..
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~----~~~~~~~~  280 (377)
T 3dwl_C          228 SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNY----SPILLQGN  280 (377)
T ss_dssp             EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSS----SEEEECCC
T ss_pred             cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCC----cEEEEEeC
Confidence            99999986432     23  3378889999999999999887632    35577654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=2.7e-25  Score=228.62  Aligned_cols=305  Identities=13%  Similarity=0.140  Sum_probs=214.7

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC---CCCeeeecCC-CcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT---TWPSIRFSSD-EAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~---~~~~~~~S~d-~~~la~~~-~~~i~v~   75 (434)
                      |.+++|+|+|+ +|++.+     .|+.|+|||+.+++.+..+..+.   .   .+.+++|+|| +++|+++. ++.|++|
T Consensus       163 v~~~~~~~~~~~~l~~~~-----~d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw  234 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVG-----DDGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCF  234 (615)
T ss_dssp             EEEEEECSSSSCEEEEEE-----TTTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEE
T ss_pred             EEEEEECCCCCcEEEEEe-----CCCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            68999999998 788888     89999999999999988887643   4   6779999999 99999874 6899999


Q ss_pred             eCCCCCCceee-e---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----ccceeEE
Q 013871           76 DTTDFPKGILY-R---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----RCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----~~~~~~~  147 (434)
                      |+.+....... .   .+...|..+.|+ + +..+++.     +.++.|++|++.+   .+.+.....+    ......+
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~-----~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~  304 (615)
T 1pgu_A          235 DGKSGEFLKYIEDDQEPVQGGIFALSWL-D-SQKFATV-----GADATIRVWDVTT---SKCVQKWTLDKQQLGNQQVGV  304 (615)
T ss_dssp             ETTTCCEEEECCBTTBCCCSCEEEEEES-S-SSEEEEE-----ETTSEEEEEETTT---TEEEEEEECCTTCGGGCEEEE
T ss_pred             ECCCCCEeEEecccccccCCceEEEEEc-C-CCEEEEE-----cCCCcEEEEECCC---CcEEEEEcCCCCcccCceeEE
Confidence            99876543333 2   455679999999 6 5555542     3457899999987   6666665554    3456677


Q ss_pred             EECCCCCeEEEEEEecccccCceeeccee--EEEEe--------------------------------------------
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESK--LNYLT--------------------------------------------  181 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~--l~~l~--------------------------------------------  181 (434)
                      .|+ ++..+++..   .|.....|.-...  +..+.                                            
T Consensus       305 ~~~-~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~  380 (615)
T 1pgu_A          305 VAT-GNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN  380 (615)
T ss_dssp             EEE-ETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC
T ss_pred             EeC-CCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE
Confidence            775 677655432   2333333221110  00000                                            


Q ss_pred             -------------------eCC---------------------------------cceeeeecCCCCCeEEEEECcCCCE
Q 013871          182 -------------------TDG---------------------------------THEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       182 -------------------~~~---------------------------------~~~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                                         ...                                 .......+....++.+++|+  ++.
T Consensus       381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  458 (615)
T 1pgu_A          381 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNY  458 (615)
T ss_dssp             CSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSE
T ss_pred             CCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCE
Confidence                               000                                 00000000112334444444  444


Q ss_pred             EEEEEccC-CCeEEEEeccccee--EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-C--C
Q 013871          210 FAVVYGFM-PASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--C  281 (434)
Q Consensus       210 ~av~~g~~-~~~v~l~d~~~~~~--~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~--~  281 (434)
                      ++  ++.. ++.+++||+....+  ..+  |...+++++|+|+|++|++++   .+|.|++||+.+++.+..+.+ |  .
T Consensus       459 l~--~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~h~~~  533 (615)
T 1pgu_A          459 VA--VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQSREVKTSRWAFRTSK  533 (615)
T ss_dssp             EE--EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTTEEEECCSCCCSSC
T ss_pred             EE--EeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcC---CCCeEEEeeCCCCcceeEeecCCCCc
Confidence            44  3555 78888998876544  333  678899999999999999998   567999999999999988865 4  5


Q ss_pred             ceEEEECC----------CCCEEEEEEcCCceeeCCcEEEEeecC--ceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          282 SVTSEWSP----------DGRYFMTATTAPRLQIDNGIKIFHHNG--SLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ~~~~~wsp----------dg~~l~tas~~prl~~D~~i~iw~~~g--~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +..++|+|          ||++|++++.      |+.|+||++..  +++...  +...+..+.|.|++. ++..
T Consensus       534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          534 INAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS  601 (615)
T ss_dssp             EEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred             eeEEEEcCccccccccccCCCEEEEEcC------CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence            67799999          9999999999      99999999965  344432  556899999999998 7665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=4.3e-25  Score=208.37  Aligned_cols=263  Identities=16%  Similarity=0.215  Sum_probs=198.6

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+||+++|+++. ++.|++|+..+.........+...|.+++|+|+ +..++.     .+.++.|++|++.
T Consensus        22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~i~vwd~~   95 (312)
T 4ery_A           22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVS-----ASDDKTLKIWDVS   95 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETT
T ss_pred             cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCC-CCEEEE-----ECCCCEEEEEECC
Confidence            346788999999999999885 689999999775543444456668999999998 455553     2456799999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      +   ++.+.....+...+..+.|+|+|+.|+..   ..|...+         .+++...........+..+|.+++|+|+
T Consensus        96 ~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~---------iwd~~~~~~~~~~~~~~~~v~~~~~~~~  160 (312)
T 4ery_A           96 S---GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVR---------IWDVKTGKCLKTLPAHSDPVSAVHFNRD  160 (312)
T ss_dssp             T---CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEE---------EEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             C---CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEE---------EEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence            8   77788888888889999999999986543   2343333         3333332221222234679999999999


Q ss_pred             CCEEEEEEccCCCeEEEEeccc-ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-
Q 013871          207 GSEFAVVYGFMPASATIFNKKC-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-  281 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~~-~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-  281 (434)
                      ++.|+  ++..++.|.+||++. ..+..+   +..++..++|+|+|++|++++   .+|.|++||+.+++.+..+.++. 
T Consensus       161 ~~~l~--~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          161 GSLIV--SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             SSEEE--EEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCC
T ss_pred             CCEEE--EEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCC
Confidence            99888  577899999999974 334443   456789999999999999998   56799999999999988887652 


Q ss_pred             ---ceEEEE-CCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeee--ecccceeeEEEcCCCCCCCC
Q 013871          282 ---SVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       282 ---~~~~~w-spdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                         .....| .+++++|++++.      |+.|+|||+... ++...  +.+.+..++|+|....++..
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSE------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCT------TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECC------CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence               122444 478899999999      999999999654 44333  45679999999998776654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.5e-25  Score=219.24  Aligned_cols=305  Identities=11%  Similarity=0.085  Sum_probs=213.4

Q ss_pred             ceEEecCCCc-EEEEEecCCCCCCC----cEEEEEc--CCCcEEE--EEeecCcCCCCCCeeeecC--------------
Q 013871            3 LLLTCLRVGL-IIQTFQKSSTPQEK----NVILWKT--ETGEAVY--QLFQKNMTKTTWPSIRFSS--------------   59 (434)
Q Consensus         3 ~~l~fSP~g~-~L~t~~~~~~~~d~----~v~iWd~--~~g~~~~--~~~~~~~~~~~~~~~~~S~--------------   59 (434)
                      ....|++.|. +|++.+-. ...|+    .|+|||+  .+|+++.  .+..+.   ..+..+++++              
T Consensus        66 ~~~~w~~~g~~~~~~g~~~-~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           66 QPAAWSALGIDAVVVGQVT-PNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             CHHHHHTTTCCEEEEEEEE-ECTTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CHHHHHhcCCCEEEEEEEE-ECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHHHHHHHHHHHHHcCCCCc
Confidence            3456788885 55565421 11345    8999999  9999874  355443   3454556654              


Q ss_pred             CCcEEEEe-cC------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013871           60 DEAVACRM-AT------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        60 d~~~la~~-~~------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      .+..++++ .+      ++|++||..... ......+...+.+++|||+ +..+++...+.  ....|++|++.+   ++
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~--~~~~i~~~d~~t---g~  214 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLAN---GA  214 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETTT---CC
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC-CCEEEEEEecC--CCcEEEEEECCC---Cc
Confidence            25555554 32      699999997533 3444456678999999999 55665544322  236899999986   44


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE
Q 013871          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av  212 (434)
                      .. ....+......+.|+|||+.|++..+.+         +...|+.+++.+.... ....+.+.+.+++|+|||+.+++
T Consensus       215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             EE-EEECCSSCEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEE
T ss_pred             EE-EeecCCCcccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEE
Confidence            43 4455666788999999999987654321         2335788877665332 22234678999999999999997


Q ss_pred             EEccCCC--eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEEC
Q 013871          213 VYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWS  288 (434)
Q Consensus       213 ~~g~~~~--~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~ws  288 (434)
                      .+. .++  .|.+||+.+.....+  +...+.+++|||+|++|++++.++.++.|++||+.+++......+..+..++|+
T Consensus       284 ~s~-~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~s  362 (415)
T 2hqs_A          284 TSD-QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLA  362 (415)
T ss_dssp             EEC-TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEEC
T ss_pred             EEC-CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEc
Confidence            543 233  788889876554444  556778899999999999988654346899999998876544444456679999


Q ss_pred             CCCCEEEEEEcCCceeeCC---cEEEEeecCceeeee--ecccceeeEEEcCC
Q 013871          289 PDGRYFMTATTAPRLQIDN---GIKIFHHNGSLFFKK--MFDKLFQAEWKPVS  336 (434)
Q Consensus       289 pdg~~l~tas~~prl~~D~---~i~iw~~~g~~~~~~--~~~~~~~~~w~p~~  336 (434)
                      |||++|++++.      |+   .|++|+++|..+...  +..++.+++|.|..
T Consensus       363 pdg~~l~~~s~------~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          363 PNGTMVIYSSS------QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             TTSSEEEEEEE------ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred             CCCCEEEEEEc------CCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence            99999999998      66   799999998876655  33579999999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=2.6e-25  Score=217.40  Aligned_cols=254  Identities=12%  Similarity=0.142  Sum_probs=188.2

Q ss_pred             CCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec------------------CCeeEEEEeCCCCCeEEEEe
Q 013871           49 KTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV------------------PGVAAFEVSKAPGSHVAVFV  110 (434)
Q Consensus        49 ~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~------------------~~v~~~~~sp~~~~~ia~~~  110 (434)
                      ...+.+++|||||++||++.++.+++|++.+.........+.                  ..|.+++|+|+ +..++.  
T Consensus        64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-g~~l~s--  140 (393)
T 1erj_A           64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLAT--  140 (393)
T ss_dssp             SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEE--
T ss_pred             CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-CCEEEE--
Confidence            367779999999999999988999999987754322111111                  13889999998 555554  


Q ss_pred             cCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee
Q 013871          111 PESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV  190 (434)
Q Consensus       111 ~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v  190 (434)
                         ++.++.|+||++.+   ++.+.....|...+..+.|+|+|+.|+..   ..|.+.+         ++++... ....
T Consensus       141 ---~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~---------iwd~~~~-~~~~  201 (393)
T 1erj_A          141 ---GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVR---------IWDLRTG-QCSL  201 (393)
T ss_dssp             ---EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEE---------EEETTTT-EEEE
T ss_pred             ---EcCCCeEEEEECCC---CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEE---------EEECCCC-eeEE
Confidence               34567999999987   77777888888999999999999986543   2344433         3333333 3334


Q ss_pred             ecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe---------CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          191 PLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL---------GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       191 ~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      .+.....+..++|+| +++.|+  +|..++.|++||++.. .+..+         |...+.+++|+|+|++|++++   .
T Consensus       202 ~~~~~~~v~~~~~~~~~~~~l~--~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~  276 (393)
T 1erj_A          202 TLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---L  276 (393)
T ss_dssp             EEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred             EEEcCCCcEEEEEECCCCCEEE--EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe---C
Confidence            444567899999999 888887  5788999999998643 33322         567899999999999999998   5


Q ss_pred             CCeEEEEEccCC------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee--e
Q 013871          260 PGDMAFWDYVDG------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--K  322 (434)
Q Consensus       260 ~g~i~iwd~~~~------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~--~  322 (434)
                      +|.|++||+.+.            .+...+.+|  .+..++|+|+|++|++++.      |+.|+|||.. |+.+..  .
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~------D~~v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK------DRGVLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC------CCeEEEEECCCCeEEEEECC
Confidence            679999998753            234455555  4667999999999999999      9999999984 555443  3


Q ss_pred             ecccceeeEEEcC
Q 013871          323 MFDKLFQAEWKPV  335 (434)
Q Consensus       323 ~~~~~~~~~w~p~  335 (434)
                      +...+..+.|.|.
T Consensus       351 h~~~v~~v~~~~~  363 (393)
T 1erj_A          351 HRNSVISVAVANG  363 (393)
T ss_dssp             CSSCEEEEEECSS
T ss_pred             CCCCEEEEEecCC
Confidence            5567999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=7.8e-26  Score=216.98  Aligned_cols=262  Identities=12%  Similarity=0.113  Sum_probs=184.0

Q ss_pred             cceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCC-CcEE-EEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTET-GEAV-YQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~-~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~   75 (434)
                      |++|+|||+   |++|++++     .|+.|+|||+.+ +..+ ..+..+.   ..+.+++|+||+++|+++. ++.|++|
T Consensus        42 v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           42 IGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHT---GPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             EEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEecccc---CCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            789999999   69999999     899999999987 6665 4555443   6777999999999999885 6799999


Q ss_pred             eCCCCCCceeeeeecCCeeEEEE--eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEV--SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~--sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      |+..... .....+...|.++.|  +|+ +..+++     .+.++.|++|++..   .+.+.....+. ....+.+..  
T Consensus       114 d~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~~l~~-----~~~dg~i~vwd~~~---~~~~~~~~~~~-~~~~~~~~~--  180 (368)
T 3mmy_A          114 DLSSNQA-IQIAQHDAPVKTIHWIKAPN-YSCVMT-----GSWDKTLKFWDTRS---SNPMMVLQLPE-RCYCADVIY--  180 (368)
T ss_dssp             ETTTTEE-EEEEECSSCEEEEEEEECSS-CEEEEE-----EETTSEEEEECSSC---SSCSEEEECSS-CEEEEEEET--
T ss_pred             EcCCCCc-eeeccccCceEEEEEEeCCC-CCEEEE-----ccCCCcEEEEECCC---CcEEEEEecCC-CceEEEecC--
Confidence            9987543 233445667999999  666 344443     24567999999987   66666655443 444444443  


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeee--cCCCCCeEEEEECcCCCE--EEEEEccCCCeEEEEecccc
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSE--FAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~v~wspdg~~--~av~~g~~~~~v~l~d~~~~  229 (434)
                      ..+++..   .+..         +..++..........  ......+..+.+.++...  -.++++..++.+.+||++..
T Consensus       181 ~~~~~~~---~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          181 PMAVVAT---AERG---------LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             TEEEEEE---GGGC---------EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             CeeEEEe---CCCc---------EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence            3443322   2222         233333222111111  122345566666555433  22336888999999999643


Q ss_pred             ----eeEEe--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECC
Q 013871          230 ----PILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP  289 (434)
Q Consensus       230 ----~~~~~--~~~------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wsp  289 (434)
                          .+..+  +..            .+++++|+|+|++|++++   .+|.|+|||+.+++++..+..|  .+..++|+|
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG---SDGRFSFWDKDARTKLKTSEQLDQPISACCFNH  325 (368)
T ss_dssp             CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSCEEEEEECT
T ss_pred             CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc---cCCeEEEEECCCCcEEEEecCCCCCceEEEECC
Confidence                23333  333            699999999999999999   6679999999999999988876  566799999


Q ss_pred             CCCEEEEEEc
Q 013871          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                      ||++|++++.
T Consensus       326 ~g~~l~~~s~  335 (368)
T 3mmy_A          326 NGNIFAYASS  335 (368)
T ss_dssp             TSSCEEEEEC
T ss_pred             CCCeEEEEec
Confidence            9999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=3.7e-25  Score=227.55  Aligned_cols=292  Identities=10%  Similarity=0.051  Sum_probs=215.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeecCcCCCC-CCeeeecC--CCcEEEEec-CCeEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQKNMTKTT-WPSIRFSS--DEAVACRMA-TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~~~~~~~-~~~~~~S~--d~~~la~~~-~~~i~   73 (434)
                      |.+++|||+|++|++.+      ++.|+|||+.++    +.+..+..+.   .. +.+++|+|  |+++|+++. ++.|+
T Consensus        21 v~~~~~spdg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~h~---~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           21 TTHLSYDPTTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTGHG---SSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCCCEEETTTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECTTT---TSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             eeEEEECCCCCEEEEec------CCeEEEEECCCCCCccccceEEecCC---CceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            78999999999999987      578999999999    8888886654   56 77999999  999999985 67999


Q ss_pred             EEeCCCC--------CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           74 FFDTTDF--------PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        74 v~~~~~~--------~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +|++...        ........+...|..++|+|+ +..+++...+ ....+.|.+|+.     +..+.....+...+.
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~-~~~~~~v~~~d~-----~~~~~~~~~~~~~v~  164 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVGEG-RDNFGVFISWDS-----GNSLGEVSGHSQRIN  164 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEECC-SSCSEEEEETTT-----CCEEEECCSCSSCEE
T ss_pred             EEeCCCCcccccccccccchhhcccccEEEEEEeCC-CCEEEEeccC-CCCccEEEEEEC-----CCcceeeecCCccEE
Confidence            9999642        111222334567999999999 4555443221 222467777773     567777778888999


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCC---CeEEEEECcC-CCEEEEEEccCCCe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG---PVHDVQWSYS-GSEFAVVYGFMPAS  220 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~---~i~~v~wspd-g~~~av~~g~~~~~  220 (434)
                      .+.|+|+|..+++.++  .|...+         .++.... .....+ .+.+   .|.+++|+|+ ++.++  ++..++.
T Consensus       165 ~~~~~~~~~~~l~~~~--~d~~v~---------vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~~~~dg~  230 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVG--DDGSVV---------FYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVI--TVGSDRK  230 (615)
T ss_dssp             EEEECSSSSCEEEEEE--TTTEEE---------EEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEE--EEETTCC
T ss_pred             EEEECCCCCcEEEEEe--CCCcEE---------EEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEE--EEeCCCe
Confidence            9999999986544432  333333         3333222 222222 2455   8999999999 98888  4677899


Q ss_pred             EEEEecc-cceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------CceEEEE
Q 013871          221 ATIFNKK-CRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------CSVTSEW  287 (434)
Q Consensus       221 v~l~d~~-~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~w  287 (434)
                      |.+||++ ...+..+      |...+.++.|+ ++++|++++   .+|.|++||+.+++.+..+..+      .+..+.|
T Consensus       231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (615)
T 1pgu_A          231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA  306 (615)
T ss_dssp             EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE
T ss_pred             EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe
Confidence            9999986 4444444      56889999999 999999998   5579999999999988888765      3445778


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--ecccceeeEEEcC
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQAEWKPV  335 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~~~w~p~  335 (434)
                      + ++.+|++++.      |+.|++|++. ++.+...  +...+..+.| |.
T Consensus       307 ~-~~~~l~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~  349 (615)
T 1pgu_A          307 T-GNGRIISLSL------DGTLNFYELGHDEVLKTISGHNKGITALTV-NP  349 (615)
T ss_dssp             E-ETTEEEEEET------TSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred             C-CCCeEEEEEC------CCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence            5 9999999999      9999999986 4443332  4456777777 65

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=9.6e-26  Score=221.38  Aligned_cols=273  Identities=9%  Similarity=0.078  Sum_probs=196.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      ....|+|+|++|++++     .|+.|+|||+.+++.+..+..+   ...+.+++|+||+++|++++ ++.|++||+....
T Consensus       101 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          101 AVDTAKLQMRRFILGT-----TEGDIKVLDSNFNLQREIDQAH---VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             EEEEECSSSCEEEEEE-----TTSCEEEECTTSCEEEEETTSS---SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEecCCCEEEEEE-----CCCCEEEEeCCCcceeeecccc---cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            4557999999999999     8999999999999877665443   36778999999999999885 6799999998866


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------------------
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------------------  140 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------------------  140 (434)
                      .......+...|.+++|+|+ +..++.     .+.++.|++|++.+   ++.+.....+                     
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  243 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDR-GRNVLS-----ASLDGTIRLWECGT---GTTIHTFNRKENPHDGVNSIALFVGTDRQLH  243 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETT-TTEEEE-----EETTSCEEEEETTT---TEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred             CceEEcCCCCcEEEEEEcCC-CCEEEE-----EcCCCcEEEeECCC---CceeEEeecCCCCCCCccEEEEecCCcceee
Confidence            55555566778999999998 455543     24567899999987   5555544432                     


Q ss_pred             ---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCC-EEEEEEc
Q 013871          141 ---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGS-EFAVVYG  215 (434)
Q Consensus       141 ---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~-~~av~~g  215 (434)
                         ...+..+.|+|+|+.|++..   .|..         +..+++..... ..+...+...|.+++|+|++. .|+  +|
T Consensus       244 ~~~~~~v~~~~~s~~~~~l~~~~---~dg~---------i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~--~g  309 (420)
T 3vl1_A          244 EISTSKKNNLEFGTYGKYVIAGH---VSGV---------ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIY--AG  309 (420)
T ss_dssp             GGCCCCCCTTCSSCTTEEEEEEE---TTSC---------EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEE--EE
T ss_pred             ecccCcccceEEcCCCCEEEEEc---CCCe---------EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEE--EE
Confidence               23344566789998765532   2332         33334333221 222223468999999999998 666  57


Q ss_pred             cCCCeEEEEecccc--eeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC---EEE-------EEe-eC
Q 013871          216 FMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQL-------GTT-RA  279 (434)
Q Consensus       216 ~~~~~v~l~d~~~~--~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~---~~i-------~~~-~~  279 (434)
                      ..++.|.+||++..  ++..+   +...++++.| |+|++|++++   .+|.|++||+.+.   +.+       ... ..
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  385 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSG---FDTSIKLDIISDPESERPAIEFETPTFLVSND  385 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEET---TTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEec---CCccEEEEeccCCCCCccceeccCccEEccCC
Confidence            78999999999642  23333   5677777755 5788999988   5679999998762   111       111 12


Q ss_pred             CCceEEEECCCCC---EEEEEEcCCceeeCCcEEEEeecC
Q 013871          280 ECSVTSEWSPDGR---YFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       280 ~~~~~~~wspdg~---~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ..+..++|+|||.   .|++++.      ++.+.+|+++.
T Consensus       386 ~~v~~~~~s~~~~~~g~l~a~g~------~g~~~~~~~~~  419 (420)
T 3vl1_A          386 DAVSQFCYVSDDESNGEVLEVGK------NNFCALYNLSN  419 (420)
T ss_dssp             CCCCEEEEECCSSSSCEEEEEET------TTEEEEEESCC
T ss_pred             cceEEEEEccCCCCcceEEEEcC------CceEEEEeccC
Confidence            2666799999999   7888888      99999999753

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-26  Score=231.94  Aligned_cols=284  Identities=7%  Similarity=0.042  Sum_probs=189.5

Q ss_pred             cceEEecCCC---------cEEEEEecC--------------CCCCCCcEEEEEcCCCcEE----EEEeecCcCCCCCCe
Q 013871            2 LLLLTCLRVG---------LIIQTFQKS--------------STPQEKNVILWKTETGEAV----YQLFQKNMTKTTWPS   54 (434)
Q Consensus         2 V~~l~fSP~g---------~~L~t~~~~--------------~~~~d~~v~iWd~~~g~~~----~~~~~~~~~~~~~~~   54 (434)
                      |++|+|+|++         +|||+....              +++.|+.|+|||+.++++.    ..+.++   ...+..
T Consensus       136 V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~---~~~V~~  212 (524)
T 2j04_B          136 VTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS---FGEVWD  212 (524)
T ss_dssp             -CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC---CCSEEE
T ss_pred             eeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec---CCcEEE
Confidence            7899999997         899987632              2346889999999887642    223332   255668


Q ss_pred             eeecCC------CcEEEEe-cCCeEEEEeCCCCCCc-----------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871           55 IRFSSD------EAVACRM-ATNEIQFFDTTDFPKG-----------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        55 ~~~S~d------~~~la~~-~~~~i~v~~~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ++|+|+      +.+||++ .|++|++|++......           .....+...|.+++|+|+ + .|+.     ++.
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~-~las-----gs~  285 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T-TVVC-----GFK  285 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S-EEEE-----EET
T ss_pred             EEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C-eEEE-----EeC
Confidence            999997      5788887 4689999999764321           012234467999999986 3 4543     356


Q ss_pred             CceEEEEEcCCCCCCCceeeeeecccceeEE--EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-C
Q 013871          117 PASVQIYACGKDLQSQPLARRSFFRCSTVQL--NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R  193 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~--~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~  193 (434)
                      ++.|++|++.+.  ..+......|...+..+  .|+++|..+++.  ...|.+.+.|.       +  ... .+...+ .
T Consensus       286 DgtV~lWD~~~~--~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS--~S~D~tvklWD-------~--~~~-~~~~~~~~  351 (524)
T 2j04_B          286 NGFVAEFDLTDP--EVPSFYDQVHDSYILSVSTAYSDFEDTVVST--VAVDGYFYIFN-------P--KDI-ATTKTTVS  351 (524)
T ss_dssp             TSEEEEEETTBC--SSCSEEEECSSSCEEEEEEECCTTSCCEEEE--EETTSEEEEEC-------G--GGH-HHHCEEEE
T ss_pred             CCEEEEEECCCC--CCceEEeecccccEEEEEEEcCCCCCeEEEE--eccCCeEEEEE-------C--CCC-Cccccccc
Confidence            789999999762  24455677788888888  678888443333  33555555443       2  111 111111 1


Q ss_pred             --CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          194 --KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       194 --~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                        ..+.|.+++|+|++..|+  ++..++.|++||++. ..+..  -|.+.|++++|||+|++|++|+   .||+|++||+
T Consensus       352 ~~~~~~v~~v~fsp~~~~l~--s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs---~Dgtv~lwd~  426 (524)
T 2j04_B          352 RFRGSNLVPVVYCPQIYSYI--YSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS---ADGSLIITNA  426 (524)
T ss_dssp             ECSCCSCCCEEEETTTTEEE--EECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE---TTTEEECCBS
T ss_pred             ccccCcccceEeCCCcCeEE--EeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE---CCCEEEEEec
Confidence              123578999999999877  567788999999864 33333  3889999999999999999998   5578988875


Q ss_pred             cCC--------------------------------------------EEEEEeeCC--CceEEEECCCCC---EEEEEEc
Q 013871          269 VDG--------------------------------------------KQLGTTRAE--CSVTSEWSPDGR---YFMTATT  299 (434)
Q Consensus       269 ~~~--------------------------------------------~~i~~~~~~--~~~~~~wspdg~---~l~tas~  299 (434)
                      ..+                                            .++..+.+|  .+..++|+|++.   .+++|+.
T Consensus       427 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~  506 (524)
T 2j04_B          427 ARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS  506 (524)
T ss_dssp             CSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred             hHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc
Confidence            311                                            011112222  345599999965   8999888


Q ss_pred             CCceeeCCcEEEEeecCceee
Q 013871          300 APRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       300 ~prl~~D~~i~iw~~~g~~~~  320 (434)
                            |+.||||++.++..+
T Consensus       507 ------~g~vrlw~l~~~~~~  521 (524)
T 2j04_B          507 ------AGLLTLEYLSLEHHH  521 (524)
T ss_dssp             ------TSEEEEEECSCC---
T ss_pred             ------CceEEEEEccccccc
Confidence                  999999999987644

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=3.4e-25  Score=212.41  Aligned_cols=269  Identities=12%  Similarity=0.116  Sum_probs=193.4

Q ss_pred             EEEEEeecCcCCCCCCeeee-----cC-CCcEEEEec-CCeEEEEeCCCCCC-------ceeeeeecCCeeEEEEeCCCC
Q 013871           38 AVYQLFQKNMTKTTWPSIRF-----SS-DEAVACRMA-TNEIQFFDTTDFPK-------GILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-----S~-d~~~la~~~-~~~i~v~~~~~~~~-------~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      +...+.++   ...+.+++|     ++ |+++|++++ |++|++|++.....       ......|...|.+++|+|+ +
T Consensus        13 ~~~~l~gH---~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~   88 (343)
T 2xzm_R           13 KRGILEGH---SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-N   88 (343)
T ss_dssp             EEEEEECC---SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-T
T ss_pred             eeeeeccc---hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-C
Confidence            34455554   367779999     76 999999985 67999999865321       1122345567999999998 4


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      .+++.     .+.++.|++|++.+   ++.+.....|...+..+.|+|+|+.|+..   ..|.+.+.|         ++.
T Consensus        89 ~~l~s-----~s~D~~v~lwd~~~---~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~w---------d~~  148 (343)
T 2xzm_R           89 CFAIS-----SSWDKTLRLWDLRT---GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLW---------NIL  148 (343)
T ss_dssp             TEEEE-----EETTSEEEEEETTS---SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEE---------ESS
T ss_pred             CEEEE-----EcCCCcEEEEECCC---CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEE---------ecc
Confidence            55543     35678999999988   77888888899999999999999986543   245444433         222


Q ss_pred             Ccceeeee--cCCCCCeEEEEECcCC----------CEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCC
Q 013871          184 GTHEGLVP--LRKEGPVHDVQWSYSG----------SEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGK  249 (434)
Q Consensus       184 ~~~~~~v~--l~~~~~i~~v~wspdg----------~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~  249 (434)
                      +.......  ..+...|.+++|+|++          ..|+  ++..|+.|++||.+......+  |...+++++|+|+|+
T Consensus       149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~  226 (343)
T 2xzm_R          149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA--SVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK  226 (343)
T ss_dssp             SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE--EEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEE--EEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCC
Confidence            22111111  1346789999999987          4566  577899999999876665554  788999999999999


Q ss_pred             eEEEEecCCCCCeEEEEEccC-CEEEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eee--e---
Q 013871          250 FLCLAGFGNLPGDMAFWDYVD-GKQLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--K---  321 (434)
Q Consensus       250 ~l~~~~~~~~~g~i~iwd~~~-~~~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~--~---  321 (434)
                      +|++++   .+|.|+|||+.+ ......+ ..+.+..++|+|++++|+++ .      |++|+||++... ...  .   
T Consensus       227 ~l~sgs---~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~------d~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          227 YIATGG---KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-T------DQGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EEEEEE---TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-E------SSCEEEEESSSCCSCSEEECCC
T ss_pred             EEEEEc---CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-C------CCCEEEEEeCCCCCCceEEeec
Confidence            999999   667999999843 3333344 33467779999999987654 5      889999998543 221  1   


Q ss_pred             ----------eecccceeeEEEcCCCCCCCC
Q 013871          322 ----------KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       322 ----------~~~~~~~~~~w~p~~~~~~~~  342 (434)
                                .+...+..++|+|++..++..
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg  327 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAG  327 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence                      123457899999999888765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.95  E-value=7.4e-26  Score=214.58  Aligned_cols=252  Identities=12%  Similarity=0.112  Sum_probs=176.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|+|++     .|++|+|||+.++.  .+..+..+   ...+.+++|++  ++++|++++ |++|++||
T Consensus        16 V~~v~~s~~g~~lasgs-----~D~~v~lwd~~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCS-----SDRSVKIFDVRNGGQILIADLRGH---EGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             EEEEEECGGGCEEEEEE-----TTTEEEEEEEETTEEEEEEEEECC---SSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             EEEeeEcCCCCEEEEEe-----CCCeEEEEEecCCCcEEEEEEcCC---CccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            78999999999999999     89999999998875  34566554   36677999986  488888874 78999999


Q ss_pred             CCCCCCcee--eeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCC
Q 013871           77 TTDFPKGIL--YRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS  153 (434)
Q Consensus        77 ~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G  153 (434)
                      +........  ...|...|.+++|+|+. +.+++.     .+.++.|++|++..............|...+..+.|+|++
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            876432122  22355679999999984 345553     3567899999987521001122233455566677777764


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc----
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----  229 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~----  229 (434)
                      ..-.++                   . ...+.                 ..++++.|+  +|..|+.|++||++..    
T Consensus       163 ~~~~~~-------------------~-~~~~~-----------------~~~~~~~l~--sgs~D~~v~lWd~~~~~~~~  203 (316)
T 3bg1_A          163 VPGSLI-------------------D-HPSGQ-----------------KPNYIKRFA--SGGCDNLIKLWKEEEDGQWK  203 (316)
T ss_dssp             CC--------------------------CCSC-----------------CCCCCCBEE--CCBTTSBCCEEEECTTSCEE
T ss_pred             CCcccc-------------------c-ccccc-----------------CccccceEE--EecCCCeEEEEEeCCCCccc
Confidence            310000                   0 00000                 012345666  6888999999998632    


Q ss_pred             eeEEe--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCCCceEEEECCCCCEEEE
Q 013871          230 PILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       230 ~~~~~--~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      .+..+  |...+++++|+|++    ++|++++   .||+|+|||+.+.       +.+..+ ...+..++|+|+|++|++
T Consensus       204 ~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s---~D~~v~iw~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~g~~las  279 (316)
T 3bg1_A          204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS---QDGRVFIWTCDDASSNTWSPKLLHKF-NDVVWHVSWSITANILAV  279 (316)
T ss_dssp             EEECCBCCSSCEEEEECCCCSSCSCCEEEEEE---TTCEEEEEECSSTTCCCCBCCEEEEC-SSCEEEEEECTTTCCEEE
T ss_pred             eeeecccCCCceEEEEecCCCCCCCceEEEEc---CCCeEEEEEccCccccchhhhhhhcC-CCcEEEEEEcCCCCEEEE
Confidence            34444  78899999999997    7899998   5679999998762       223222 236677999999999999


Q ss_pred             EEcCCceeeCCcEEEEeec
Q 013871          297 ATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       297 as~~prl~~D~~i~iw~~~  315 (434)
                      ++.      |+.|+||+..
T Consensus       280 ~~~------D~~v~lw~~~  292 (316)
T 3bg1_A          280 SGG------DNKVTLWKES  292 (316)
T ss_dssp             EES------SSCEEEEEEC
T ss_pred             EcC------CCeEEEEEEC
Confidence            999      9999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=3.2e-25  Score=210.44  Aligned_cols=247  Identities=11%  Similarity=0.181  Sum_probs=179.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc----EEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE----AVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQF   74 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~----~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v   74 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.++.    .+..+..+   ...+.+++|+|  |+++|+++. |+.|++
T Consensus        14 v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAH---DSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECC---SSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             eeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccC---CCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            78999999999999999     89999999998773    45555543   36777999999  689998885 679999


Q ss_pred             EeCCCCCC---------ceeeeeecCCeeEEEEeCCC-CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce
Q 013871           75 FDTTDFPK---------GILYRLRVPGVAAFEVSKAP-GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST  144 (434)
Q Consensus        75 ~~~~~~~~---------~~~~~~~~~~v~~~~~sp~~-~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~  144 (434)
                      ||+.....         ......+...|.+++|+|+. +..+++     .+.++.|++|++..   .+.+.......   
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iwd~~~---~~~~~~~~~~~---  154 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC-----LGNDGILRLYDALE---PSDLRSWTLTS---  154 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTCEEEEEECSS---TTCTTCCEEEE---
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE-----ecCCCcEEEecCCC---hHHhccccccc---
Confidence            99876431         11222345679999999983 334443     24567999999976   33322111000   


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC---CCEEEEEEccCCCeE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASA  221 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd---g~~~av~~g~~~~~v  221 (434)
                                                     .+..+       ...+..+...+.+++|+|+   +..|++  +..++.+
T Consensus       155 -------------------------------~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~  194 (351)
T 3f3f_A          155 -------------------------------EMKVL-------SIPPANHLQSDFCLSWCPSRFSPEKLAV--SALEQAI  194 (351)
T ss_dssp             -------------------------------EEESC-------SCCCSSCSCCCEEEEECCCSSSCCEEEE--EETTEEE
T ss_pred             -------------------------------ccccc-------ccccCCcccceeEEEeccCCCCCcEEEE--ecCCCcE
Confidence                                           00000       0011123578899999997   777774  6667788


Q ss_pred             EEEecccce---eEEe--CCcCeeEEEECCCC----CeEEEEecCCCCCeEEEEEccCC---------------------
Q 013871          222 TIFNKKCRP---ILEL--GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMAFWDYVDG---------------------  271 (434)
Q Consensus       222 ~l~d~~~~~---~~~~--~~~~~~~i~~SP~g----~~l~~~~~~~~~g~i~iwd~~~~---------------------  271 (434)
                      .+|+.....   +..+  |...+++++|+|+|    ++|++++   .+|.|++||+.++                     
T Consensus       195 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  271 (351)
T 3f3f_A          195 IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC---KDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD  271 (351)
T ss_dssp             EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE---TTSCEEEEEEEECC--------------------
T ss_pred             EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc---CCCeEEEEeCCCCcCccccCCcccceeccCCCcc
Confidence            777665433   3344  68899999999999    7899998   6679999999864                     


Q ss_pred             -------------------------EEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          272 -------------------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 -------------------------~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                                               +.+..+.+|  .+..++|+|||++|++++.      |+.|+||+++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~------dg~v~iw~~~~  337 (351)
T 3f3f_A          272 VDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD------DGKVRLWKATY  337 (351)
T ss_dssp             -------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET------TSCEEEEEECT
T ss_pred             cccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC------CCcEEEEecCc
Confidence                                     566667665  5667999999999999999      99999999964

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=2.3e-24  Score=214.72  Aligned_cols=288  Identities=11%  Similarity=0.125  Sum_probs=204.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +.++.|  ++++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|++++ +++++ .|++|++||+.+.
T Consensus       125 ~~~~~~--~~~~l~sgs-----~dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~  193 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG  193 (464)
T ss_dssp             EEEEEE--ETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTSCEEEEETTTT
T ss_pred             EEEEEE--CCCEEEEEc-----CCCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC
Confidence            345555  678999999     89999999999999998887643   677799999999 55555 6789999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEEcCCCCCCC--------------------ceeeeee
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYACGKDLQSQ--------------------PLARRSF  139 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~~~~~~~~~--------------------~i~~~~~  139 (434)
                      ........+...|..+.|++..+ ..+++     .+.++.|++|++.......                    .+.....
T Consensus       194 ~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          194 CCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             cEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            54344445667899999996433 44443     2456789999998632100                    0222333


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      +...+..+  +++|..+++..   .|..         +..+++...........+...|.+++|+|+++.++  +|..++
T Consensus       269 ~~~~v~~~--~~~~~~l~~~~---~d~~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--sg~~dg  332 (464)
T 3v7d_B          269 HMASVRTV--SGHGNIVVSGS---YDNT---------LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMDT  332 (464)
T ss_dssp             CSSCEEEE--EEETTEEEEEE---TTSC---------EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETTS
T ss_pred             ccceEEEE--cCCCCEEEEEe---CCCe---------EEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEE--EEeCCC
Confidence            33344343  56677655432   3333         33334333322222223578999999999999988  578899


Q ss_pred             eEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013871          220 SATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM  295 (434)
Q Consensus       220 ~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~  295 (434)
                      .|++||++ +..+..+  |...+.++.|+  +++|++++   .+|.|++||+.+++........ .+..++|+|+|++|+
T Consensus       333 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  407 (464)
T 3v7d_B          333 TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV  407 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe---CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEE
Confidence            99999996 4555555  78899999998  58999998   5679999999988766666544 455689999999998


Q ss_pred             EEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEE
Q 013871          296 TATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWK  333 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~  333 (434)
                      +++       |+.|+|||+ +|+++...   +...++.+.|+
T Consensus       408 ~~~-------dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          408 SGS-------ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             EEE-------TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             Eec-------CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            876       789999998 56666542   44578999997

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=3.5e-24  Score=203.32  Aligned_cols=266  Identities=14%  Similarity=0.162  Sum_probs=197.6

Q ss_pred             EEEeecCcCCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecC
Q 013871           40 YQLFQKNMTKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      .++.+   |...+.+++|+|++ ++|++++ |++|++|++......     .....|...|.++.|+|+ +.+++.    
T Consensus        11 ~~l~g---H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s----   82 (319)
T 3frx_A           11 GTLEG---HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALS----   82 (319)
T ss_dssp             EEECC---CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT-SSEEEE----
T ss_pred             EEEcc---ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC-CCEEEE----
Confidence            34544   34777799999965 7888874 689999998643221     123345668999999998 455543    


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871          113 SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                       .+.++.|++|++.+   ++.+.....|...+..+.|+|+|..|+..   ..|.+.+.|.         +.+. ......
T Consensus        83 -~s~D~~v~~wd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd---------~~~~-~~~~~~  145 (319)
T 3frx_A           83 -ASWDKTLRLWDVAT---GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWT---------IKGQ-CLATLL  145 (319)
T ss_dssp             -EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEE---------TTSC-EEEEEC
T ss_pred             -EeCCCEEEEEECCC---CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEE---------CCCC-eEEEEe
Confidence             35678999999988   77888888899999999999999976542   3555554332         2222 222223


Q ss_pred             CCCCCeEEEEECcCCC------EEEEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          193 RKEGPVHDVQWSYSGS------EFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       193 ~~~~~i~~v~wspdg~------~~av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      .+...|.++.|+|.+.      .++  ++..|+.|++||++... ...+  |...+++++|+|+|++|++++   .+|.|
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~--s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~---~dg~i  220 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTII--SAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG---KDGEI  220 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEE--EEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE---TTCEE
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEE--EEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence            4578999999999643      454  68889999999997543 3344  788999999999999999999   66799


Q ss_pred             EEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-----------ecccceeeE
Q 013871          264 AFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----------MFDKLFQAE  331 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-----------~~~~~~~~~  331 (434)
                      +|||+.+++.+..+..+ .+..++|+|||.+|++++       ++++++|+++...+...           +...+..++
T Consensus       221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~-------~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  293 (319)
T 3frx_A          221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT-------ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA  293 (319)
T ss_dssp             EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE-------TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred             EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc-------CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence            99999999998888776 556699999999998876       66799999976543221           123467899


Q ss_pred             EEcCCCCCCCC
Q 013871          332 WKPVSPDKFGD  342 (434)
Q Consensus       332 w~p~~~~~~~~  342 (434)
                      |+|++..++..
T Consensus       294 ~spdg~~l~sg  304 (319)
T 3frx_A          294 WSADGQTLFAG  304 (319)
T ss_dssp             ECTTSSEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999888765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=1.8e-24  Score=205.99  Aligned_cols=268  Identities=10%  Similarity=0.069  Sum_probs=194.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCcCCCCCCeeeecCCCc-EEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNMTKTTWPSIRFSSDEA-VACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++   .+..+..+   ...+.+++|+||++ +|+++. ++.|++|+
T Consensus        14 v~~~~~s~~~~~l~~~~-----~d~~v~iw~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRY---KHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEEC---SSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEc-----CCCeEEEEEeCCCCccccceeeeec---CCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            78999999999999999     89999999998887   23333333   36777999999999 888874 68999999


Q ss_pred             C-CCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC------CCceeeeeecccceeEE
Q 013871           77 T-TDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ------SQPLARRSFFRCSTVQL  147 (434)
Q Consensus        77 ~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~------~~~i~~~~~~~~~~~~~  147 (434)
                      + ..... .....  +...|.++.|+|  +..+++     .+.++.|++|++.....      .+++.... +...+..+
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~  156 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIA-----ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM  156 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEE-----EETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC--CCEEEE-----EcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence            9 76443 33444  666899999999  444443     24567999999865100      12222333 66778899


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cc--eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEE
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH--EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATI  223 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~--~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l  223 (434)
                      .|++++  +++. .  .|..         ++.++... ..  .......+...|.+++|+| +++.|+  ++..++.+.+
T Consensus       157 ~~~~~~--l~~~-~--~d~~---------i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~--~~~~dg~i~i  220 (342)
T 1yfq_A          157 DTNSSR--LIVG-M--NNSQ---------VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAV  220 (342)
T ss_dssp             EECSSE--EEEE-E--STTE---------EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEE
T ss_pred             EecCCc--EEEE-e--CCCe---------EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEE--EEecCCcEEE
Confidence            999987  3332 1  2222         34444433 11  2223344578999999999 999888  4677899999


Q ss_pred             Eeccc-------ceeEEe--CCc---------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C--c
Q 013871          224 FNKKC-------RPILEL--GSG---------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C--S  282 (434)
Q Consensus       224 ~d~~~-------~~~~~~--~~~---------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~--~  282 (434)
                      ||++.       .....+  +..         .+++++|+|+|++|++++   .+|.|++||+.+++.+..+..+ .  +
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~h~~~v  297 (342)
T 1yfq_A          221 EFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSV  297 (342)
T ss_dssp             EECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEE
T ss_pred             EEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec---CCceEEEEcCccHhHhhhhhcccCCCc
Confidence            98853       333333  433         899999999999999998   5679999999999999988875 3  3


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCc-EEEEe
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNG-IKIFH  313 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~-i~iw~  313 (434)
                      ..++  |||++|++++.      |+. .+.|.
T Consensus       298 ~~~~--~~~~~l~s~s~------Dg~~~~~~~  321 (342)
T 1yfq_A          298 VKIA--CSDNILCLATS------DDTFKTNAA  321 (342)
T ss_dssp             EEEE--ECSSEEEEEEE------CTHHHHCSS
T ss_pred             eEec--CCCCeEEEEec------CCccccccc
Confidence            3466  99999999999      887 44444

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.6e-24  Score=204.09  Aligned_cols=269  Identities=9%  Similarity=0.107  Sum_probs=199.3

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |...+.+++|+||+++|+++. ++.|++|++.+.........+...|.+++|+|+ +..+++.     +.++.|++|++.
T Consensus        31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-----~~dg~i~iwd~~  104 (369)
T 3zwl_B           31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTG-----SADYSIKLWDVS  104 (369)
T ss_dssp             CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT-SSEEEEE-----ETTTEEEEEETT
T ss_pred             eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC-CCEEEEE-----eCCCeEEEEECC
Confidence            347788999999999999985 679999999876544444456678999999998 4555432     446799999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---------eeecCCCC-
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---------LVPLRKEG-  196 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---------~v~l~~~~-  196 (434)
                      +   ++.+.... +...+..+.|+|+|+.+++.... ..    ...|...+|.+........         .....+.+ 
T Consensus       105 ~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~-~~----~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B          105 N---GQCVATWK-SPVPVKRVEFSPCGNYFLAILDN-VM----KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             T---CCEEEEEE-CSSCEEEEEECTTSSEEEEEECC-BT----TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             C---CcEEEEee-cCCCeEEEEEccCCCEEEEecCC-cc----CCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            7   66666665 77788999999999987765321 00    0012222343332221100         00111223 


Q ss_pred             -CeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          197 -PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       197 -~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                       .+.+++|+|+++.|++  +..++.|.+||++.  ..+..+  +...+.+++|+|+|++|++++   .+|.|.+||+.++
T Consensus       176 ~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~  250 (369)
T 3zwl_B          176 DAATVAGWSTKGKYIIA--GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTL  250 (369)
T ss_dssp             CCEEEEEECGGGCEEEE--EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTC
T ss_pred             cceeEEEEcCCCCEEEE--EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCC
Confidence             8999999999998884  67789999999975  444444  788999999999999999998   5679999999999


Q ss_pred             EEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCC--------------cEEEEeec-Cceeeee--ecccceeeEEE
Q 013871          272 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDN--------------GIKIFHHN-GSLFFKK--MFDKLFQAEWK  333 (434)
Q Consensus       272 ~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~--------------~i~iw~~~-g~~~~~~--~~~~~~~~~w~  333 (434)
                      +.+..+... .+..++|+|+|+++++++.      ++              .+++|+.. ++.+...  +...+..+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s  324 (369)
T 3zwl_B          251 QVLKKYETDCPLNTAVITPLKEFIILGGG------QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS  324 (369)
T ss_dssp             CEEEEEECSSCEEEEEECSSSSEEEEEEC------CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             ceeeeecCCCCceeEEecCCCceEEEeec------CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC
Confidence            888888765 5566999999999999998      66              79999984 4444333  45679999999


Q ss_pred             cCCCCCCCC
Q 013871          334 PVSPDKFGD  342 (434)
Q Consensus       334 p~~~~~~~~  342 (434)
                      |++..++..
T Consensus       325 ~~~~~l~s~  333 (369)
T 3zwl_B          325 PQGTSYASG  333 (369)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            998877765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.94  E-value=8.8e-24  Score=205.46  Aligned_cols=272  Identities=11%  Similarity=0.081  Sum_probs=195.6

Q ss_pred             EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCCCCCCceeeeeec
Q 013871           13 IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        13 ~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+++.+     .|+.|++||+.+++.+..+..+    ..+.+++|+||++++ +++ .+++|++||..+......... .
T Consensus         4 l~vs~~-----~d~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-~   73 (391)
T 1l0q_A            4 AYIANS-----ESDNISVIDVTSNKVTATIPVG----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G   73 (391)
T ss_dssp             EEEEET-----TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S
T ss_pred             EEEEcC-----CCCEEEEEECCCCeEEEEeecC----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-C
Confidence            445555     7899999999999998887765    335589999999977 444 578999999977543222222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ..+..++|+|++ ..+++.    ....+.|++|++.+   ++.+..... ......+.|+|+|+.|++...  .+.    
T Consensus        74 ~~v~~~~~spdg-~~l~~~----~~~~~~v~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~----  138 (391)
T 1l0q_A           74 SSPQGVAVSPDG-KQVYVT----NMASSTLSVIDTTS---NTVAGTVKT-GKSPLGLALSPDGKKLYVTNN--GDK----  138 (391)
T ss_dssp             SSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEEC-SSSEEEEEECTTSSEEEEEET--TTT----
T ss_pred             CCccceEECCCC-CEEEEE----ECCCCEEEEEECCC---CeEEEEEeC-CCCcceEEECCCCCEEEEEeC--CCC----
Confidence            378999999984 444332    23347899999987   555555443 346678999999998765432  121    


Q ss_pred             eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCC
Q 013871          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKG  248 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g  248 (434)
                           .++.++.... .....+.....+..++|+|+|+.+++ ++..++.|.+||++.... ..+ +...+.+++|+|+|
T Consensus       139 -----~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~dg~~l~~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          139 -----TVSVINTVTK-AVINTVSVGRSPKGIAVTPDGTKVYV-ANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             -----EEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEE-EETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             -----EEEEEECCCC-cEEEEEecCCCcceEEECCCCCEEEE-EeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence                 3555555443 22233333567799999999998866 467788999999975443 333 45678899999999


Q ss_pred             CeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871          249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~  321 (434)
                      ++|++++.+..++.|.+||+.+++.+..+..+ .+..++|+|||++|++++..     |+.|++||+. |+++..
T Consensus       212 ~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~~  281 (391)
T 1l0q_A          212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITAT  281 (391)
T ss_dssp             SEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEEE
Confidence            99999875334579999999999988888766 55569999999998655433     9999999995 454443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-25  Score=239.78  Aligned_cols=220  Identities=11%  Similarity=0.079  Sum_probs=150.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++||+++     .|+.|+||+..+++.+..+.    +...+.+++|+| +++|+++ .|++|++||+...
T Consensus        20 V~~lafspdg~~lAsgs-----~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIAT-----VTGEVHIYGQQQVEVVIKLE----DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEEEEETTTTEEEEEE-----TTSEEEEECSTTCEEEEECS----SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cEEEEECCCCCEEEEEe-----CCCEEEEEeCCCcEEEEEcC----CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            78999999999999999     89999999998887655543    236677999999 8888877 5689999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce-----------eeeeecccceeEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL-----------ARRSFFRCSTVQLNW  149 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-----------~~~~~~~~~~~~~~w  149 (434)
                      ....... +...|.+++|+|+ +..+++     +..++.|++|++..   ....           .....|...+.++.|
T Consensus        90 ~~~~~~~-~~~~V~~v~~sp~-g~~l~s-----gs~dg~V~lwd~~~---~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~  159 (902)
T 2oaj_A           90 KVLTTVF-VPGKITSIDTDAS-LDWMLI-----GLQNGSMIVYDIDR---DQLSSFKLDNLQKSSFFPAARLSPIVSIQW  159 (902)
T ss_dssp             SEEEEEE-CSSCEEEEECCTT-CSEEEE-----EETTSCEEEEETTT---TEEEEEEECCHHHHHTCSSSCCCCCCEEEE
T ss_pred             cEEEEEc-CCCCEEEEEECCC-CCEEEE-----EcCCCcEEEEECCC---CccccceeccccccccccccCCCCeEEEEE
Confidence            4322222 3457999999999 455554     24567899999976   3322           112335667889999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-------------------CCCCeEEEEECcCCCEE
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------------------KEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------------------~~~~i~~v~wspdg~~~  210 (434)
                      +|++..+++.+.  .|... .|         ++... .....+.                   +...|.+++|+|+|+.|
T Consensus       160 sp~~~~~l~~g~--~dg~v-lW---------d~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l  226 (902)
T 2oaj_A          160 NPRDIGTVLISY--EYVTL-TY---------SLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI  226 (902)
T ss_dssp             ETTEEEEEEEEC--SSCEE-EE---------ETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE
T ss_pred             ccCCCCEEEEEe--CCCcE-EE---------ECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE
Confidence            997654444332  33332 33         22222 1111111                   13679999999999999


Q ss_pred             EEEEccCCCeEEEEeccc-ceeEE--e-----C-------------CcCeeEEEEC----CCC-CeEEEEec
Q 013871          211 AVVYGFMPASATIFNKKC-RPILE--L-----G-------------SGPYNTVRWN----PKG-KFLCLAGF  256 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~-~~~~~--~-----~-------------~~~~~~i~~S----P~g-~~l~~~~~  256 (434)
                      +  ++..|+.|++||++. +.+..  +     |             ...+++++|+    |++ .+|++++.
T Consensus       227 a--sgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~  296 (902)
T 2oaj_A          227 I--TIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS  296 (902)
T ss_dssp             E--EEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred             E--EEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence            8  678899999999964 43331  2     2             3368999994    554 45565543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-25  Score=221.55  Aligned_cols=274  Identities=9%  Similarity=0.019  Sum_probs=188.8

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCC---CcE---EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEE
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTET---GEA---VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~---g~~---~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~   73 (434)
                      |++|+||| +|++|+|++     .|+.|+|||+.+   +..   ...+.    |...+.+++|+|++++|+++. |+.|+
T Consensus        66 V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             EEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            78999999 999999999     899999999977   432   22332    236777999999999999885 68999


Q ss_pred             EEeCC---CCCCceeeeeecCCeeEEEEeCC--CCCeEEEE---ecC-----CCCCCceEEEEEcCCCCCCCceeeeee-
Q 013871           74 FFDTT---DFPKGILYRLRVPGVAAFEVSKA--PGSHVAVF---VPE-----SKGSPASVQIYACGKDLQSQPLARRSF-  139 (434)
Q Consensus        74 v~~~~---~~~~~~~~~~~~~~v~~~~~sp~--~~~~ia~~---~~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~-  139 (434)
                      +||+.   ....  ........+..+.++|+  ....+++.   .++     ..+.++.|++|++.+   .+.+..... 
T Consensus       137 vwd~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~  211 (437)
T 3gre_A          137 VLKVNHYQQESE--VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT---LERLQIIENS  211 (437)
T ss_dssp             EEEEEEEEETTE--EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---CCEEEEEECC
T ss_pred             EEEeccccCCce--eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeEEEccC
Confidence            99984   2221  12222224555665551  11111111   000     134568999999988   777777776 


Q ss_pred             -cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECc----CCCEEEEE
Q 013871          140 -FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY----SGSEFAVV  213 (434)
Q Consensus       140 -~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wsp----dg~~~av~  213 (434)
                       +...+..+.|+|+|..|+...   .|...+         .+++.... ...+.+.+..+|.+++|+|    ++..|+  
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~---~dg~i~---------iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~--  277 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGT---TRGIID---------IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV--  277 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEE---TTSCEE---------EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE--
T ss_pred             CCCCceEEEEECCCCCEEEEEc---CCCeEE---------EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE--
Confidence             778899999999999876532   343333         33332221 1222335567899997775    455555  


Q ss_pred             EccCCCeEEEEeccc-ceeEEe----------------------------CCcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871          214 YGFMPASATIFNKKC-RPILEL----------------------------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       214 ~g~~~~~v~l~d~~~-~~~~~~----------------------------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~  264 (434)
                      ++..|+.|++||++. ..+..+                            +...+++++|+ ++++|++++   .+|.|+
T Consensus       278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~---~d~~i~  353 (437)
T 3gre_A          278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE---ATSSIV  353 (437)
T ss_dssp             EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG---GGTEEE
T ss_pred             EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC---CCCeEE
Confidence            688899999999963 333222                            33457889999 778999998   567999


Q ss_pred             EEEccCCEEEEEeeC-------------------------------------C--CceEEEECCC--CCEEEEEEcCCce
Q 013871          265 FWDYVDGKQLGTTRA-------------------------------------E--CSVTSEWSPD--GRYFMTATTAPRL  303 (434)
Q Consensus       265 iwd~~~~~~i~~~~~-------------------------------------~--~~~~~~wspd--g~~l~tas~~prl  303 (434)
                      +||+.+++.+..+.+                                     |  .+..++|+++  +.+|++|+.    
T Consensus       354 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~----  429 (437)
T 3gre_A          354 MFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN----  429 (437)
T ss_dssp             EEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET----
T ss_pred             EEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC----
Confidence            999998764444432                                     2  4566899998  889999999    


Q ss_pred             eeCCcEEEEe
Q 013871          304 QIDNGIKIFH  313 (434)
Q Consensus       304 ~~D~~i~iw~  313 (434)
                        |+.|+||+
T Consensus       430 --dG~I~iw~  437 (437)
T 3gre_A          430 --SGLIGIFQ  437 (437)
T ss_dssp             --TSCEEEEC
T ss_pred             --CceEEEeC
Confidence              99999995

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.3e-24  Score=211.05  Aligned_cols=244  Identities=15%  Similarity=0.209  Sum_probs=184.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|  ++.+++++ .++.|++||+...
T Consensus       137 v~~v~~s~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          137 VASVKWSHDGSFLSVGL-----GNGLVDIYDVESQTKLRTMAGHQ---ARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCS---SCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEC-----CCCeEEEEECcCCeEEEEecCCC---CceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence            78999999999999999     89999999999999988887543   66768888  56778777 5689999999853


Q ss_pred             CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      .. ......+...|.+++|+|+ +..+++     .+.++.|++|++..   ...+.....+...+..+.|+|+|..+++.
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~-~~~l~s-----~~~d~~v~iwd~~~---~~~~~~~~~~~~~v~~~~~~p~~~~ll~~  277 (401)
T 4aez_A          207 NHQIGTLQGHSSEVCGLAWRSD-GLQLAS-----GGNDNVVQIWDARS---SIPKFTKTNHNAAVKAVAWCPWQSNLLAT  277 (401)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEETTC---SSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred             cceeeEEcCCCCCeeEEEEcCC-CCEEEE-----EeCCCeEEEccCCC---CCccEEecCCcceEEEEEECCCCCCEEEE
Confidence            32 2333445668999999997 555554     24567899999987   67777777788889999999999888765


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce---eEE--e
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILE--L  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~~~--~  234 (434)
                      ++...|..         ++.+++... .....+.....|.+++|+|+++.+++++|..++.+.+||+....   ...  .
T Consensus       278 ~~gs~d~~---------i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~  347 (401)
T 4aez_A          278 GGGTMDKQ---------IHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPA  347 (401)
T ss_dssp             ECCTTTCE---------EEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEEC
T ss_pred             ecCCCCCE---------EEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecC
Confidence            43222333         344444333 33334445678999999999999998778889999999986532   222  2


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      |...+.+++|+|+|++|++++   .+|.|+|||+.+++.+...
T Consensus       348 h~~~v~~~~~s~dg~~l~s~~---~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          348 HDTRVLYSALSPDGRILSTAA---SDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC---TTSEEEEEECCC-------
T ss_pred             CCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcccccc
Confidence            788999999999999999998   5679999999988766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=3.8e-24  Score=227.81  Aligned_cols=298  Identities=13%  Similarity=0.080  Sum_probs=212.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||+|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+||+++|+++. ++.|++|++...
T Consensus        58 v~~~~~s~~~~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           58 VRAGKFIARKNWIIVGS-----DDFRIRVFNYNTGEKVVDFEAHP---DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEETTTCCEEEEEECCS---SCEEEEEECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             EEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC
Confidence            78999999999999999     79999999999999998887643   6677999999999999885 579999998764


Q ss_pred             CC-ceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECC--CCCeE
Q 013871           81 PK-GILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR--GSTGL  156 (434)
Q Consensus        81 ~~-~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~--~G~~l  156 (434)
                      .. ......+...|.+++|+|..+..+++     .+.++.|++|++..   .........+. ..+..+.|+|  +|..|
T Consensus       130 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-----~~~dg~v~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          130 WALEQTFEGHEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWSLGQ---STPNFTLTTGQERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             SEEEEEEECCSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---SSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred             ceEEEEEcCCCCcEEEEEEEcCCCCEEEE-----EeCCCeEEEEECCC---CcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence            22 22233455679999999943455544     24457999999976   45554444443 6778899999  88876


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~  234 (434)
                      ++..   .|..         +..++..... ....+ .+.+.|.+++|+|+++.++  ++..++.|.+||+.. ..+..+
T Consensus       202 ~~~~---~dg~---------i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          202 ITAS---DDLT---------IKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIII--SGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EEEC---TTSE---------EEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEE--EEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEe---CCCE---------EEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEE--EEeCCCeEEEEECCCCcEEEEe
Confidence            5531   2222         3334433332 22222 3578999999999999888  577789999999964 444444


Q ss_pred             --CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCC----------EEEEEe------------------------
Q 013871          235 --GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDG----------KQLGTT------------------------  277 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~----------~~i~~~------------------------  277 (434)
                        +...+.+++|+|+|+. +++++.+   +.+.+|++...          +.+...                        
T Consensus       267 ~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (814)
T 3mkq_A          267 NVGLERSWCIATHPTGRKNYIASGFD---NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE  343 (814)
T ss_dssp             CCSSSSEEEEEECTTCGGGEEEEEET---TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred             ecCCCcEEEEEEccCCCceEEEEEeC---CCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence              6788999999999983 2334423   46888886532          222210                        


Q ss_pred             ---------eCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCCC
Q 013871          278 ---------RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       278 ---------~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                               ..+  .+..++|+|||++|++++       |+.+.||++......  ....+..+.|+|++..+...
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-------~~~~~i~~~~~~~~~--~~~~i~~~~~spdg~~la~~  410 (814)
T 3mkq_A          344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWRNK--AFGKCQDFVWGPDSNSYALI  410 (814)
T ss_dssp             CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-------TTEEEEEETTTTEEE--EEEECSEEEECTTSSCEEEE
T ss_pred             cceeeeecCCCCccCCceeEECCCCCEEEEec-------CCEEEEEECcccccc--CCCceEEEEEeCCCCeEEEE
Confidence                     111  345699999999999886       789999997654322  24567889999988766543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=4e-24  Score=205.87  Aligned_cols=236  Identities=9%  Similarity=0.103  Sum_probs=177.4

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|+||+++|+++ .++.|++|+.....  .......+...|.+++|+|+ +..+++.     +.++.|++|++.
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-----~~dg~i~vwd~~   82 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTC-----GTDRNAYVWTLK   82 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEE-----ETTSCEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCC-CCEEEEE-----cCCCeEEEEECC
Confidence            677799999999999998 57899999987753  22333445668999999998 4555542     345789999997


Q ss_pred             CCCCCCceee--eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEE
Q 013871          127 KDLQSQPLAR--RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       127 ~~~~~~~i~~--~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~  202 (434)
                      .   .+....  ...+...+..+.|+|+|+.|++..   .|...       .+|.++.....  ...+...+...|.+++
T Consensus        83 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v-------~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           83 G---RTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVI-------SICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             T---TEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSE-------EEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             C---CeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCCEE-------EEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            6   443333  244677888999999999876542   23222       24444332211  1122233578999999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEecc-------------------cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~-------------------~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      |+|+++.|+  ++..++.+.+||++                   ...+..+  |...+++++|+|+|++|++++   .+|
T Consensus       150 ~~~~~~~l~--~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~  224 (372)
T 1k8k_C          150 WHPNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HDS  224 (372)
T ss_dssp             ECTTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TTT
T ss_pred             EcCCCCEEE--EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe---CCC
Confidence            999999888  57778999999953                   3445555  578899999999999999998   567


Q ss_pred             eEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          262 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .|++||+.+++.+..+..+  .+..++|+|+|++|+++ .      |+.|+||++..
T Consensus       225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------d~~i~i~~~~~  274 (372)
T 1k8k_C          225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS  274 (372)
T ss_dssp             EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred             EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-e------CCeEEEEEccC
Confidence            9999999999888888776  56679999999988887 6      99999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-24  Score=208.99  Aligned_cols=236  Identities=13%  Similarity=0.189  Sum_probs=165.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.  +++.+..+..+   ...+.+++|+++  +.+|+++. |+.|++||
T Consensus        14 v~~~~~s~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd   85 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK   85 (379)
T ss_dssp             EEEEEECSSSSEEEEEE-----TTSCEEEEEEETTEEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEE-----CCCcEEEEecCCCcceeeeEecCC---CCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence            78999999999999998     89999999998  55666666554   366779999987  89998885 67999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +.........                                                 ....+...+..+.|+|+  |.
T Consensus        86 ~~~~~~~~~~-------------------------------------------------~~~~~~~~v~~~~~~~~~~~~  116 (379)
T 3jrp_A           86 EENGRWSQIA-------------------------------------------------VHAVHSASVNSVQWAPHEYGP  116 (379)
T ss_dssp             EETTEEEEEE-------------------------------------------------EECCCSSCEEEEEECCGGGCS
T ss_pred             cCCCceeEee-------------------------------------------------eecCCCcceEEEEeCCCCCCC
Confidence            7652200000                                                 00112234456777777  66


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-------------dg~~~av~~g~~~~~v  221 (434)
                      .+++..   .|...+       +|.+.............+..+|.+++|+|             ++..|+  ++..++.|
T Consensus       117 ~l~~~~---~d~~i~-------v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~dg~i  184 (379)
T 3jrp_A          117 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  184 (379)
T ss_dssp             EEEEEE---TTSEEE-------EEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEE--EEETTSCE
T ss_pred             EEEEec---CCCcEE-------EEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEE--EEeCCCeE
Confidence            654431   222222       23332221111222224578999999999             688887  57788999


Q ss_pred             EEEecccc-----eeEEe--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE---EEEEee--CC--CceE
Q 013871          222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTR--AE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~---g~~l~~~~~~~~~g~i~iwd~~~~~---~i~~~~--~~--~~~~  284 (434)
                      ++||++..     .+..+  |...+++++|+|+   |++|++++   .+|.|+|||+.++.   ......  .+  .+..
T Consensus       185 ~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~  261 (379)
T 3jrp_A          185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  261 (379)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEE
T ss_pred             EEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe---CCCEEEEEeCCCCCccceeeeeccccCCCcEEE
Confidence            99998632     22233  6889999999999   89999998   66799999998762   222221  12  5667


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++|+|||++|++++.      |+.|+||++.
T Consensus       262 ~~~s~~g~~l~~~~~------dg~i~iw~~~  286 (379)
T 3jrp_A          262 ASWSLSGNVLALSGG------DNKVTLWKEN  286 (379)
T ss_dssp             EEECSSSCCEEEEES------SSSEEEEEEE
T ss_pred             EEEcCCCCEEEEecC------CCcEEEEeCC
Confidence            999999999999999      9999999996

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=2.5e-23  Score=197.77  Aligned_cols=282  Identities=17%  Similarity=0.147  Sum_probs=198.6

Q ss_pred             cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCC-CcEEEEec-CCeEEEEeCCCCCCce-----eeeeecCCeeEEE
Q 013871           27 NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTDFPKGI-----LYRLRVPGVAAFE   97 (434)
Q Consensus        27 ~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~~~~~~-----~~~~~~~~v~~~~   97 (434)
                      ++.++...+.  +...++.+   |...|.+++|+|+ +++|++++ |++|+|||+.......     ....|...|.++.
T Consensus        17 ~~~~~~~~~~~~~l~~tL~G---H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~   93 (340)
T 4aow_A           17 NLYFQSMMTEQMTLRGTLKG---HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV   93 (340)
T ss_dssp             ---------CEEEEEEEECC---CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE
T ss_pred             cEEEEEccCCceEEEEEECC---ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE
Confidence            4555554433  33445655   4478889999997 58999874 6899999987644221     1223456799999


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeE
Q 013871           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                      |+|+ +..++.     .+.++.|++|+...   ................+.+++++..|+..   ..|...+        
T Consensus        94 ~s~d-g~~l~s-----~~~d~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~--------  153 (340)
T 4aow_A           94 ISSD-GQFALS-----GSWDGTLRLWDLTT---GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIK--------  153 (340)
T ss_dssp             ECTT-SSEEEE-----EETTSEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEE--------
T ss_pred             ECCC-CCEEEE-----EcccccceEEeecc---cceeeeecCCCCceeEEEEeecCccceee---cCCCeEE--------
Confidence            9998 455553     34567899999987   56666666677777888999999886543   2343333        


Q ss_pred             EEEeeCCcceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEE
Q 013871          178 NYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       178 ~~l~~~~~~~~~v~-l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~  253 (434)
                       .++.......... ..+...+..++|++++....++++..++.|++||++.. .+..+  |.+.+++++|+|+|++|++
T Consensus       154 -~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  232 (340)
T 4aow_A          154 -LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS  232 (340)
T ss_dssp             -EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             -EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE
Confidence             2233232222222 22467899999999887655557888999999999754 34444  7889999999999999999


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee-e----------
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF-K----------  321 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~-~----------  321 (434)
                      ++   .+|.|++||+.+.+.+..+.++ .+..+.|+|++.++ +++.      |+.|+|||+.+..+. .          
T Consensus       233 ~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~  302 (340)
T 4aow_A          233 GG---KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAAT------GPSIKIWDLEGKIIVDELKQEVISTSS  302 (340)
T ss_dssp             EE---TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEE------TTEEEEEETTTTEEEEEECCC------
T ss_pred             Ee---CCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccC------CCEEEEEECCCCeEEEeccccceeeec
Confidence            98   6679999999999999888876 45569999998755 5556      999999999765432 2          


Q ss_pred             -eecccceeeEEEcCCCCCCCC
Q 013871          322 -KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       322 -~~~~~~~~~~w~p~~~~~~~~  342 (434)
                       .+...+..++|.|++..|++.
T Consensus       303 ~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          303 KAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             -CCCCCEEEEEECTTSSEEEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEEE
Confidence             133568899999999888765

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-23  Score=200.52  Aligned_cols=275  Identities=14%  Similarity=0.137  Sum_probs=184.3

Q ss_pred             CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee----ecCCeeEEEEeCCCCCeEEEE
Q 013871           35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL----RVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      +.+++..+..+.   ..+.+++|+++  +||++ .|++|++|++..........+    |...|.+++|+|+ +.+++. 
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~las-   75 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAA-   75 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT-SSEEEE-
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC-CCEEEE-
Confidence            455667776654   56669999998  77777 578999999876332122222    5557999999998 555654 


Q ss_pred             ecCCCCCCceEEEEEcCCCC----CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc
Q 013871          110 VPESKGSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT  185 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~----~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~  185 (434)
                          .+.++.|+||++....    ....+.....|...+..+.|+|+|++|+..   ..|.+.+.|       .+...+.
T Consensus        76 ----~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iw-------d~~~~~~  141 (330)
T 2hes_X           76 ----GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIW-------ETDESGE  141 (330)
T ss_dssp             ----EETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEE-------ECCTTCC
T ss_pred             ----EeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEE-------eccCCCC
Confidence                3456789999985311    023455666788889999999999986543   245554433       3211111


Q ss_pred             -ceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ceeEEe--CCcCeeEEEECCC--CCeEEEEec
Q 013871          186 -HEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPK--GKFLCLAGF  256 (434)
Q Consensus       186 -~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~~~~~--~~~~~~~i~~SP~--g~~l~~~~~  256 (434)
                       ......+ .+...|.+++|+|++..|+  +++.|+.|++||...   ..+..+  |.+.+.++.|+|+  +.+|++++ 
T Consensus       142 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~--s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-  218 (330)
T 2hes_X          142 EYECISVLQEHSQDVKHVIWHPSEALLA--SSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-  218 (330)
T ss_dssp             CCEEEEEECCCSSCEEEEEECSSSSEEE--EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-
T ss_pred             CeEEEEEeccCCCceEEEEECCCCCEEE--EEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-
Confidence             1122222 3578999999999999888  678899999999853   344444  7889999999999  67899998 


Q ss_pred             CCCCCeEEEEEccCC--------EEEEEeeC-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc---eeeee
Q 013871          257 GNLPGDMAFWDYVDG--------KQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFFKK  322 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~--------~~i~~~~~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~---~~~~~  322 (434)
                        .+|.|++||+.++        ..+..+.. |  .+..++|++++ +|++++.      |+.|+||+....   .+...
T Consensus       219 --~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~------dg~v~iw~~~~~~~~~~~~~  289 (330)
T 2hes_X          219 --DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA------DGVLAVYEEVDGEWKVFAKR  289 (330)
T ss_dssp             --TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEET------TSCEEEEEEETTEEEEEEEE
T ss_pred             --CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeC------CCEEEEEEcCCCceEEEecc
Confidence              5679999998754        34444443 3  56679999776 7899998      999999998653   22222


Q ss_pred             ---ecc-cceeeEEEcC--CCCCCCC
Q 013871          323 ---MFD-KLFQAEWKPV--SPDKFGD  342 (434)
Q Consensus       323 ---~~~-~~~~~~w~p~--~~~~~~~  342 (434)
                         +.. .+..++|.|.  +..|++.
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             SCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             ccccccceEEEEEEecCCCceEEEEe
Confidence               233 6889999994  4445443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.9e-23  Score=205.49  Aligned_cols=284  Identities=9%  Similarity=-0.030  Sum_probs=194.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc---EEEEEeecCc-------------------------------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE---AVYQLFQKNM-------------------------------   47 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~---~~~~~~~~~~-------------------------------   47 (434)
                      |.+++|||||++|++..      ++.|++||+.+|+   .+..+.....                               
T Consensus         7 ~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            7 LQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             EEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            57899999999888765      5789999999999   6666653210                               


Q ss_pred             --------------------CCCCCCeeeecCCCcEE-EEe-cCCeEEEEeCC--CCCCceeee--eecCCeeEEEEeCC
Q 013871           48 --------------------TKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDTT--DFPKGILYR--LRVPGVAAFEVSKA  101 (434)
Q Consensus        48 --------------------~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~~--~~~~~~~~~--~~~~~v~~~~~sp~  101 (434)
                                          +...+.+++|+||+++| +++ .++.|++|++.  .........  .+...|.+++|+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  160 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED  160 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence                                11146789999999996 666 56899999998  544333332  23457999999998


Q ss_pred             CCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeeecccceeEEEECCC---CCeEEEEEEecccccCceeecceeE
Q 013871          102 PGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRG---STGLLAVAQSDVDKTNQSYYGESKL  177 (434)
Q Consensus       102 ~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l  177 (434)
                       +..+++-     +..+.|.+|++.+..... .+.....+...+.++.|+|+   |..|+..   +.|...         
T Consensus       161 -~~~l~~~-----~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i---------  222 (450)
T 2vdu_B          161 -DTTVIIA-----DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHI---------  222 (450)
T ss_dssp             -SSEEEEE-----ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCE---------
T ss_pred             -CCEEEEE-----eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcE---------
Confidence             4555442     346789999987632121 33356677888999999999   7765432   234333         


Q ss_pred             EEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEeC--------------------
Q 013871          178 NYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG--------------------  235 (434)
Q Consensus       178 ~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~~--------------------  235 (434)
                      +++++........ ...+.+.|.+++|+ +++.|+  ++..|+.|.+||++. ..+..+.                    
T Consensus       223 ~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~--s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          223 KISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL--SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             EEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE--EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             EEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE--EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence            3333333322222 23467899999999 999988  577899999999864 3333331                    


Q ss_pred             -------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC---EEEEEeeCC-CceEEEECCCCCEEEEEEcCCc
Q 013871          236 -------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG---KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       236 -------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~---~~i~~~~~~-~~~~~~wspdg~~l~tas~~pr  302 (434)
                             ...+..++|+|+|++|++++.+  ++.|.|||+  .++   +.+..+..+ .+..++|+|++ .+++......
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~--d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~~~~~~  376 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA--TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTLDNKES  376 (450)
T ss_dssp             -----CBCCCEEEEEECSSSSEEEEEETT--CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEECCTTC
T ss_pred             ccccccceEEEEEEEEeCCCCEEEEEECC--CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEEecccC
Confidence                   2457899999999999988733  379999999  555   677777665 56679999964 4444433100


Q ss_pred             ee-eCCcEEEEeec
Q 013871          303 LQ-IDNGIKIFHHN  315 (434)
Q Consensus       303 l~-~D~~i~iw~~~  315 (434)
                      .. -++.|.||.++
T Consensus       377 ~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          377 SGVQKNFAKFIEYN  390 (450)
T ss_dssp             CSSCCCSEEEEEEE
T ss_pred             CCCCCcceEEEEEE
Confidence            00 15668999875

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=7.9e-24  Score=204.04  Aligned_cols=245  Identities=13%  Similarity=0.149  Sum_probs=167.0

Q ss_pred             EEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013871           30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      ||++.+++.+.++..+   ...+.+++|||||++||++.++.++||++....  ........++..+.++++ ...+++.
T Consensus         3 i~s~~~~~~~~~~~~h---~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~   76 (355)
T 3vu4_A            3 LGSMITRNPIVPENHV---SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVA--HIMSQEMRHLSKVRMLHR-TNYVAFV   76 (355)
T ss_dssp             -------------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEE--EEEEEECSCCCEEEECTT-SSEEEEE
T ss_pred             cccccccCCccccccC---CCceEEEEECCCCCEEEEEcCCEEEEEecCCcc--eeeeeecCCeEEEEEcCC-CCEEEEE
Confidence            5677777776655443   367889999999999999988889999987643  223344456888888887 4444432


Q ss_pred             ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee
Q 013871          110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                          ++.++.|++|++.+   ++.+.... +...+..+.|++++  +++.    .|.         .++.+++.......
T Consensus        77 ----~~~d~~v~iWd~~~---~~~~~~~~-~~~~v~~v~~~~~~--~~~~----~~~---------~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           77 ----TGVKEVVHIWDDVK---KQDVSRIK-VDAPVKDLFLSREF--IVVS----YGD---------VISVFKFGNPWKRI  133 (355)
T ss_dssp             ----CSSTTEEEEEETTT---TEEEEEEE-CSSCEEEEEECSSE--EEEE----ETT---------EEEEEESSTTCCBS
T ss_pred             ----ECCccEEEEEECCC---CcEEEEEE-CCCceEEEEEcCCE--EEEE----EcC---------EEEEEECCCCceee
Confidence                23446999999987   67777666 45578889998864  3332    122         13333333321111


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-----------------eEEe--CCcCeeEEEECCCCCe
Q 013871          190 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------------ILEL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       190 v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-----------------~~~~--~~~~~~~i~~SP~g~~  250 (434)
                      ..+.  .+...+++++  ..+++.+|..++.|++||++...                 +..+  |.+.+++++|||+|++
T Consensus       134 ~~~~--~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~  209 (355)
T 3vu4_A          134 TDDI--RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM  209 (355)
T ss_dssp             SCCE--EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred             EEec--cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence            1111  1445567777  67776558899999999997532                 3444  7899999999999999


Q ss_pred             EEEEecCCCCCe-EEEEEccCCEEEEEee-C-C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          251 LCLAGFGNLPGD-MAFWDYVDGKQLGTTR-A-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       251 l~~~~~~~~~g~-i~iwd~~~~~~i~~~~-~-~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      |++++   .+|+ |+|||+.+++++..+. + |  .+..++|+|||++|++++.      |+.|+||++..
T Consensus       210 l~s~s---~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~------d~~v~iw~~~~  271 (355)
T 3vu4_A          210 VATCS---QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD------KWTLHVFEIFN  271 (355)
T ss_dssp             EEEEE---TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET------TCEEEEEESSC
T ss_pred             EEEEe---CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC------CCEEEEEEccC
Confidence            99999   6678 9999999999998887 3 4  5667999999999999999      99999999954

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=214.00  Aligned_cols=243  Identities=8%  Similarity=0.119  Sum_probs=168.7

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCC-----------ceeeeeec------------CCeeEEEEeCCCC-C
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPK-----------GILYRLRV------------PGVAAFEVSKAPG-S  104 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~-----------~~~~~~~~------------~~v~~~~~sp~~~-~  104 (434)
                      ..+.+++|+|||++||++. ++.|+||++.....           ......|.            ..|.++.|+|+++ .
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~  108 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA  108 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence            5677999999999999985 68999999876441           12233344            5699999999853 3


Q ss_pred             eEEEEecCCCCCCceEEEEEcCCCCCCCce---------------------------------------ee-eeecccce
Q 013871          105 HVAVFVPESKGSPASVQIYACGKDLQSQPL---------------------------------------AR-RSFFRCST  144 (434)
Q Consensus       105 ~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---------------------------------------~~-~~~~~~~~  144 (434)
                      .++.-     +.++.|++|++...   ...                                       .. ...|...+
T Consensus       109 ~l~s~-----s~d~~i~iw~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  180 (447)
T 3dw8_B          109 QFLLS-----TNDKTIKLWKISER---DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI  180 (447)
T ss_dssp             EEEEE-----ECSSCEEEEEEEEE---EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred             eEEEe-----CCCCeEEEEecccc---cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence            44432     45678999998651   110                                       01 23467788


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCC-CEEEEEEccCCCeEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSG-SEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg-~~~av~~g~~~~~v~l  223 (434)
                      ..+.|+|+|+.|+..    .|...+.|.-...-..+..... .......+...|.+++|+|++ +.|+  ++..++.|++
T Consensus       181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~--s~~~dg~i~i  253 (447)
T 3dw8_B          181 NSISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFV--YSSSKGTIRL  253 (447)
T ss_dssp             CEEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEE--EEETTSCEEE
T ss_pred             EEEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEE--EEeCCCeEEE
Confidence            899999999986542    3555554432211000000000 000011347889999999998 7777  5778999999


Q ss_pred             Eecccce-----eEEe--CCc------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CEEEEEeeCCC--
Q 013871          224 FNKKCRP-----ILEL--GSG------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAEC--  281 (434)
Q Consensus       224 ~d~~~~~-----~~~~--~~~------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~~--  281 (434)
                      ||++...     +..+  +..            .+++++|+|+|++|++++   . |.|+|||+.+ ++.+..+..|.  
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~-~~v~iwd~~~~~~~~~~~~~~~~~  329 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---Y-LSVKVWDLNMENRPVETYQVHEYL  329 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---S-SEEEEEETTCCSSCSCCEESCGGG
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---C-CeEEEEeCCCCccccceeeccccc
Confidence            9997533     3444  333            899999999999999987   4 6999999987 77777777663  


Q ss_pred             ---------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          282 ---------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       282 ---------------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                                     ...++|+|||++|++++.      |+.|+|||+...
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~------dg~v~iwd~~~~  374 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY------NNFFRMFDRNTK  374 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS------TTEEEEEETTTC
T ss_pred             cccccccccccccccceEEEECCCCCEEEEecc------CCEEEEEEcCCC
Confidence                           223899999999999999      999999999654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=4.3e-24  Score=209.02  Aligned_cols=276  Identities=9%  Similarity=0.101  Sum_probs=196.5

Q ss_pred             ceEEecCCCcEEEE-EecCCCCCCCcEEEEEcCCCcE----EEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013871            3 LLLTCLRVGLIIQT-FQKSSTPQEKNVILWKTETGEA----VYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         3 ~~l~fSP~g~~L~t-~~~~~~~~d~~v~iWd~~~g~~----~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~   75 (434)
                      ..++++|+...++. .+     .|+.|+||++.+...    +..+..   |...+.+++|+| ++.+|+++. |+.|++|
T Consensus        38 ~~~~~~~~~~~~~~~~~-----~~g~i~v~~~~~~~~~~~~~~~~~~---h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw  109 (402)
T 2aq5_A           38 GFCAVNPKFMALICEAS-----GGGAFLVLPLGKTGRVDKNVPLVCG---HTAPVLDIAWCPHNDNVIASGSEDCTVMVW  109 (402)
T ss_dssp             CSEEECSSEEEEEBCCS-----SSCCEEEEETTCCEECCTTCCCBCC---CSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred             CcEEECCCeEEEEEEEc-----CCCEEEEEECccCCCCCCCCceEec---CCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence            35778887765553 33     689999999865432    222322   447788999999 999999985 6799999


Q ss_pred             eCCCCC-------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee--eecccceeE
Q 013871           76 DTTDFP-------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR--SFFRCSTVQ  146 (434)
Q Consensus        76 ~~~~~~-------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~--~~~~~~~~~  146 (434)
                      ++....       .......|...|.+++|+|++...++..     +.++.|++|++.+   ++.+...  ..+...+..
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-----~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~  181 (402)
T 2aq5_A          110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-----GCDNVILVWDVGT---GAAVLTLGPDVHPDTIYS  181 (402)
T ss_dssp             ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-----ETTSCEEEEETTT---TEEEEEECTTTCCSCEEE
T ss_pred             EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-----cCCCEEEEEECCC---CCccEEEecCCCCCceEE
Confidence            998752       2233445667899999999964566542     4567899999987   6777666  668888999


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee--cCCCC-CeEEEEECcCCCEEEEEEc---cCCCe
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEG-PVHDVQWSYSGSEFAVVYG---FMPAS  220 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~-~i~~v~wspdg~~~av~~g---~~~~~  220 (434)
                      +.|+|+|+.|+...   .|..         +..+++.... ....  ..+.+ .+..++|+|+++.+++  |   ..++.
T Consensus       182 ~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~d~~  246 (402)
T 2aq5_A          182 VDWSRDGALICTSC---RDKR---------VRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTT--GFSRMSERQ  246 (402)
T ss_dssp             EEECTTSSCEEEEE---TTSE---------EEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEE--EECTTCCEE
T ss_pred             EEECCCCCEEEEEe---cCCc---------EEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEE--eccCCCCce
Confidence            99999999876532   3332         3444443332 2222  23344 4899999999987774  5   57889


Q ss_pred             EEEEecccce----eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----EEEEeeC-CCceEEEECCC
Q 013871          221 ATIFNKKCRP----ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRA-ECSVTSEWSPD  290 (434)
Q Consensus       221 v~l~d~~~~~----~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~-~~~~~~~wspd  290 (434)
                      |.+||++...    ...+ +...+.+++|+|+|++|++++.  .+|.|++||+.+++    .+..+.+ ..+..++|+|+
T Consensus       247 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~--~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          247 VALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGK--GDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK  324 (402)
T ss_dssp             EEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEET--TCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred             EEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEc--CCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence            9999996422    2333 5677999999999999987663  35799999999875    3444432 35677999999


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      |.++++  .      |+.+++|++....+
T Consensus       325 ~~~~~s--~------~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          325 RGLEVN--K------CEIARFYKLHERKC  345 (402)
T ss_dssp             GGSCGG--G------TEEEEEEEEETTEE
T ss_pred             ccccee--c------ceeEEEEEcCCCcE
Confidence            998764  4      77999999976543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=2.9e-23  Score=200.08  Aligned_cols=265  Identities=8%  Similarity=0.066  Sum_probs=179.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      |++++|||||++|++++     .+ .++|||+.+++.+.....     ..+..+.|++++++++..  .+++|++||...
T Consensus        22 V~~v~fs~dg~~la~g~-----~~-~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~   90 (355)
T 3vu4_A           22 VTDYEFNQDQSCLILST-----LK-SFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK   90 (355)
T ss_dssp             CCEEEECTTSSEEEEEC-----SS-EEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred             eEEEEECCCCCEEEEEc-----CC-EEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence            78999999999999877     34 589999998877655432     234578899998887654  346999999887


Q ss_pred             CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           80 FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        80 ~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ........ +...|.++.++++.   +++.      ..+.|++|++.+.  .+.+.....   ....+.+++  ..+++ 
T Consensus        91 ~~~~~~~~-~~~~v~~v~~~~~~---~~~~------~~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~--~~la~-  152 (355)
T 3vu4_A           91 KQDVSRIK-VDAPVKDLFLSREF---IVVS------YGDVISVFKFGNP--WKRITDDIR---FGGVCEFSN--GLLVY-  152 (355)
T ss_dssp             TEEEEEEE-CSSCEEEEEECSSE---EEEE------ETTEEEEEESSTT--CCBSSCCEE---EEEEEEEET--TEEEE-
T ss_pred             CcEEEEEE-CCCceEEEEEcCCE---EEEE------EcCEEEEEECCCC--ceeeEEecc---CCceEEEEc--cEEEE-
Confidence            54322222 33468899998762   2222      1357999999872  144433332   222334444  44433 


Q ss_pred             EEecccccCceeecceeEEEEeeCCcc---------------e-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCe-EE
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTH---------------E-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS-AT  222 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~---------------~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~-v~  222 (434)
                      ++...|...+       +|.+  ....               . ......+.++|.+++|+|+|+.|+  +++.|++ |+
T Consensus       153 ~sg~~~g~v~-------iwd~--~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~--s~s~d~~~v~  221 (355)
T 3vu4_A          153 SNEFNLGQIH-------ITKL--QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA--TCSQDGTIIR  221 (355)
T ss_dssp             EESSCTTCEE-------EEEC--CC------------------CCEEECCCSSCEEEEEECTTSSEEE--EEETTCSEEE
T ss_pred             eCCCcCcEEE-------EEEC--CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE--EEeCCCCEEE
Confidence            2222333332       2322  2211               0 122234678999999999999998  6888998 99


Q ss_pred             EEecc-cceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEE-------------------
Q 013871          223 IFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGT-------------------  276 (434)
Q Consensus       223 l~d~~-~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~-------------------  276 (434)
                      +||++ +..+..+    |...+++++|||+|++|++++   .+|.|+|||+++...  ...                   
T Consensus       222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s---~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (355)
T 3vu4_A          222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS---DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF  298 (355)
T ss_dssp             EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE---TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred             EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE---CCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence            99996 4555544    678899999999999999999   557999999875421  111                   


Q ss_pred             -eeC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          277 -TRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       277 -~~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                       +..   .....++|+|||++|++++.      |+.+++|++.
T Consensus       299 ~~~~~~~~~~~~~a~~~d~~~l~~~~~------dg~~~~~~~~  335 (355)
T 3vu4_A          299 KLSVDKHVRGCKIAWISESSLVVVWPH------TRMIETFKVV  335 (355)
T ss_dssp             ECCCCTTCCCCEEEESSSSEEEEEETT------TTEEEEEEEE
T ss_pred             EeccCCCCCceEEEEeCCCCEEEEEeC------CCeEEEEEEE
Confidence             111   11255899999999999998      9999999984

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=2.7e-23  Score=219.25  Aligned_cols=314  Identities=10%  Similarity=0.040  Sum_probs=204.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCC-CC-----cEEEEEcCCCcEEEEEeecCcCC---------------------CCCCe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQ-EK-----NVILWKTETGEAVYQLFQKNMTK---------------------TTWPS   54 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~-d~-----~v~iWd~~~g~~~~~~~~~~~~~---------------------~~~~~   54 (434)
                      |.+++|||||++|++.+     . |+     +|++||+.+|+....+..+....                     ..+..
T Consensus        39 ~~~~~~SpdG~~la~~~-----~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           39 LMKPKVAPDGSRVTFLR-----GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CEEEEECTTSSEEEEEE-----CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCceEecCCCEEEEEe-----ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            67899999999999988     4 55     89999999998766654432110                     12558


Q ss_pred             eeecCCCcEEEEecCCeEEEEeCCCCC--CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013871           55 IRFSSDEAVACRMATNEIQFFDTTDFP--KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        55 ~~~S~d~~~la~~~~~~i~v~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      ++|||||++|+++.+++|.+|++....  .......+...+..++|||+ +..|++...      ..|.+|++..   +.
T Consensus       114 ~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPD-G~~la~~~~------~~i~~~d~~~---g~  183 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPK-GGFVSFIRG------RNLWVIDLAS---GR  183 (741)
T ss_dssp             CEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTT-SSEEEEEET------TEEEEEETTT---TE
T ss_pred             eEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCC-CCEEEEEeC------CcEEEEecCC---CC
Confidence            999999999999988999999998751  11222333456899999999 566655431      3799999876   33


Q ss_pred             ceeeeeeccc----------------ceeEEEECCCCCeEEEEEEecccccCc---------------ee-------ecc
Q 013871          133 PLARRSFFRC----------------STVQLNWNRGSTGLLAVAQSDVDKTNQ---------------SY-------YGE  174 (434)
Q Consensus       133 ~i~~~~~~~~----------------~~~~~~ws~~G~~l~~~~~~~~d~~~~---------------~~-------~g~  174 (434)
                      ..........                ....+.|||||+.|++...... ....               ..       .+.
T Consensus       184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            3222111111                1357999999999887643211 0000               00       022


Q ss_pred             eeEEEEeeCC-cceeeeecC--CCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEecccceeEEe---CCc----CeeE
Q 013871          175 SKLNYLTTDG-THEGLVPLR--KEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKCRPILEL---GSG----PYNT  241 (434)
Q Consensus       175 ~~l~~l~~~~-~~~~~v~l~--~~~~i~~v~wspdg~~~av~~g~---~~~~v~l~d~~~~~~~~~---~~~----~~~~  241 (434)
                      ..|+.+++.+ .....+...  +...+.+++| |||+.+++....   .+..|.+||+.......+   +..    .+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence            3677777766 543333322  3567889999 999999976432   234899999865433322   222    4468


Q ss_pred             EEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC--CceEE-EECCCCCEEEEEEcCCceeeCC--cEEEEeec
Q 013871          242 VRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVTS-EWSPDGRYFMTATTAPRLQIDN--GIKIFHHN  315 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~~-~wspdg~~l~tas~~prl~~D~--~i~iw~~~  315 (434)
                      ++|||||+++++++   .+|.+.||.++ +++ +..+..+  .+..+ .|||||+.|++.+..     |+  .++||++.
T Consensus       342 ~~~spdg~~~~~~~---~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~-----~~~~~~~l~~~~  412 (741)
T 2ecf_A          342 LRFLDDGSILWSSE---RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGI-----ESARESQIYAVP  412 (741)
T ss_dssp             CEECTTSCEEEEEC---TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECS-----SCTTCBEEEEEE
T ss_pred             eEECCCCeEEEEec---CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeC-----CCCceEEEEEEE
Confidence            99999999777765   34556666544 333 5555443  34455 699999998777662     44  89999984


Q ss_pred             --Cceeeeee-cccceeeEEEcCCCCCCC
Q 013871          316 --GSLFFKKM-FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       316 --g~~~~~~~-~~~~~~~~w~p~~~~~~~  341 (434)
                        |..+.... ...+..+.|+|++..++.
T Consensus       413 ~~g~~~~~l~~~~~~~~~~~spdg~~l~~  441 (741)
T 2ecf_A          413 LQGGQPQRLSKAPGMHSASFARNASVYVD  441 (741)
T ss_dssp             TTCCCCEECCCSCSEEEEEECTTSSEEEE
T ss_pred             cCCCCeeecccCCCceEEEECCCCCEEEE
Confidence              55333322 345678899998876553

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=1.8e-23  Score=202.32  Aligned_cols=202  Identities=8%  Similarity=-0.001  Sum_probs=141.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++++|||||++|++++   +..|+.|+|||+.+++++..+.+.    ..+.+++|||||++++++.++.+.+|+.....
T Consensus       136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~~~~~----~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~  208 (365)
T 4h5i_A          136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFEIETR----GEVKDLHFSTDGKVVAYITGSSLEVISTVTGS  208 (365)
T ss_dssp             EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEEEECS----SCCCEEEECTTSSEEEEECSSCEEEEETTTCC
T ss_pred             EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEEeCCC----CceEEEEEccCCceEEeccceeEEEEEeccCc
Confidence            56899999999998776   236899999999999998887543    45779999999999999998888888876644


Q ss_pred             Cceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           82 KGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ......  .+...|..++|+|++ ..++....+ .+....+++|++...                         ......
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d-~~~~~~i~~~~~~~~-------------------------~~~~~~  261 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADD-TVLIAASLK-KGKGIVLTKISIKSG-------------------------NTSVLR  261 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETT-EEEEEEEES-SSCCEEEEEEEEETT-------------------------EEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCC-CEEEEEecC-CcceeEEeecccccc-------------------------eeccee
Confidence            221111  122346777777773 333322211 112223444444220                         000000


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe---C
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL---G  235 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~---~  235 (434)
                                       ...           ...+..+|.+++|||||++||  +|+.|+.|+|||++. +.+..+   |
T Consensus       262 -----------------~~~-----------~~~~~~~V~~~~~Spdg~~la--sgs~D~~V~iwd~~~~~~~~~~~~gH  311 (365)
T 4h5i_A          262 -----------------SKQ-----------VTNRFKGITSMDVDMKGELAV--LASNDNSIALVKLKDLSMSKIFKQAH  311 (365)
T ss_dssp             -----------------EEE-----------EESSCSCEEEEEECTTSCEEE--EEETTSCEEEEETTTTEEEEEETTSS
T ss_pred             -----------------eee-----------ecCCCCCeEeEEECCCCCceE--EEcCCCEEEEEECCCCcEEEEecCcc
Confidence                             000           011257899999999999998  578899999999964 555554   7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ...|++++|||||++|++++   .|++|+|||+..
T Consensus       312 ~~~V~~v~fSpdg~~laS~S---~D~tvrvw~ip~  343 (365)
T 4h5i_A          312 SFAITEVTISPDSTYVASVS---AANTIHIIKLPL  343 (365)
T ss_dssp             SSCEEEEEECTTSCEEEEEE---TTSEEEEEECCT
T ss_pred             cCCEEEEEECCCCCEEEEEe---CCCeEEEEEcCC
Confidence            88999999999999999999   556999999853

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=7.3e-24  Score=205.71  Aligned_cols=277  Identities=10%  Similarity=0.083  Sum_probs=189.3

Q ss_pred             EEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCe
Q 013871           30 LWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSH  105 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~  105 (434)
                      +|++.+.+....+..+   ...+.+++|+||+ ++|+++ .++.|++|++...........  +...|.+++|+|+++..
T Consensus        57 ~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPF---DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCC---SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCC---CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            3444556666666554   3677799999999 888888 468999999987654333332  56689999999953455


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871          106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +++.     +.++.|++|++..    ..+.....+   ...+..+.|+|+|+.|+...   .|..         ++.+++
T Consensus       134 l~s~-----~~d~~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~---------i~i~d~  192 (383)
T 3ei3_B          134 LFVS-----SIRGATTLRDFSG----SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD---STGR---------LLLLGL  192 (383)
T ss_dssp             EEEE-----ETTTEEEEEETTS----CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE---TTSE---------EEEEET
T ss_pred             EEEE-----eCCCEEEEEECCC----CceEEEeccCCCCCCeEEEEECCCCCEEEEEC---CCCC---------EEEEEC
Confidence            5542     4567999999974    333333322   35688999999999765432   2322         344444


Q ss_pred             CCcceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeccc-----ceeEEe-CCcCeeEEEECC-CCCeEEEE
Q 013871          183 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC-----RPILEL-GSGPYNTVRWNP-KGKFLCLA  254 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~-----~~~~~~-~~~~~~~i~~SP-~g~~l~~~  254 (434)
                      .+. .......+.+.|.+++|+|+++ .|+  ++..|+.|++||++.     ..+..+ +...+.+++|+| +|++|+++
T Consensus       193 ~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~--s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~  269 (383)
T 3ei3_B          193 DGH-EIFKEKLHKAKVTHAEFNPRCDWLMA--TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT  269 (383)
T ss_dssp             TSC-EEEEEECSSSCEEEEEECSSCTTEEE--EEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE
T ss_pred             CCC-EEEEeccCCCcEEEEEECCCCCCEEE--EEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE
Confidence            332 2222223578999999999998 555  577799999999974     333333 788999999999 99999999


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEE---------EEEcCCceeeCCcEEEEee-cC
Q 013871          255 GFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFM---------TATTAPRLQIDNGIKIFHH-NG  316 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~---------tas~~prl~~D~~i~iw~~-~g  316 (434)
                      +   .+|.|++||+.+++.+..+..+        ....+.|+|++..++         +++.      |+.|+|||+ +|
T Consensus       270 ~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~------d~~i~iwd~~~~  340 (383)
T 3ei3_B          270 D---QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLND------KRTIDIYDANSG  340 (383)
T ss_dssp             E---SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTC------CCCEEEEETTTC
T ss_pred             c---CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCC------CCeEEEEecCCC
Confidence            8   5679999999887544433321        112245555555444         3345      999999998 56


Q ss_pred             ceeeeee----cccceeeEEEcCCCCCCCC
Q 013871          317 SLFFKKM----FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       317 ~~~~~~~----~~~~~~~~w~p~~~~~~~~  342 (434)
                      +++....    ...+..++|+|++..++..
T Consensus       341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~  370 (383)
T 3ei3_B          341 GLVHQLRDPNAAGIISLNKFSPTGDVLASG  370 (383)
T ss_dssp             CEEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred             ceeeeecCCCCCceEEEEEEecCccEEEEe
Confidence            6666553    2346666999998877665

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.92  E-value=2.8e-23  Score=217.88  Aligned_cols=264  Identities=16%  Similarity=0.170  Sum_probs=194.4

Q ss_pred             CCCCCCeeeecCCC-cEEEEec-CCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceE
Q 013871           48 TKTTWPSIRFSSDE-AVACRMA-TNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASV  120 (434)
Q Consensus        48 ~~~~~~~~~~S~d~-~~la~~~-~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v  120 (434)
                      |...+.+++|++++ .+|++++ |++|++|++......     .....|...|.+++|+|+ +.+++.     ++.++.|
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~s-----gs~Dg~v  454 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALS-----GSWDGEL  454 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSEE
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC-CCEEEE-----EeCCCcE
Confidence            44778899999875 6888874 689999998753321     123345667999999998 455553     3567899


Q ss_pred             EEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee---cCCCCC
Q 013871          121 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP---LRKEGP  197 (434)
Q Consensus       121 ~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~---l~~~~~  197 (434)
                      +||++.+   +..+.....|...+.++.|+|+|+.|+..   ..|.+.+.|.         ..+.....+.   ..+...
T Consensus       455 ~vwd~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd---------~~~~~~~~~~~~~~~h~~~  519 (694)
T 3dm0_A          455 RLWDLAA---GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWN---------TLGECKYTISEGGEGHRDW  519 (694)
T ss_dssp             EEEETTT---TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEEC---------TTSCEEEEECSSTTSCSSC
T ss_pred             EEEECCC---CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEE---------CCCCcceeeccCCCCCCCc
Confidence            9999987   77788888899999999999999986543   3555555443         2221111111   124678


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      |.+++|+|++....+++++.|+.|++||++.. ....+  |.+.+++++|||+|++|++++   .+|.|+|||+.+++.+
T Consensus       520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~---~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG---KDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSBCEEEETTTTEEE
T ss_pred             EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCceE
Confidence            99999999985323336888999999999744 33344  788999999999999999999   6679999999999998


Q ss_pred             EEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce-eeeeec---------------------ccceeeE
Q 013871          275 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFKKMF---------------------DKLFQAE  331 (434)
Q Consensus       275 ~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~-~~~~~~---------------------~~~~~~~  331 (434)
                      ..+..+ .+..++|+|++.+|++++       |++|+|||+.... +.....                     -.+..+.
T Consensus       597 ~~~~~~~~v~~~~~sp~~~~l~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  669 (694)
T 3dm0_A          597 YSLEANSVIHALCFSPNRYWLCAAT-------EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLN  669 (694)
T ss_dssp             ECCBCSSCEEEEEECSSSSEEEEEE-------TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEE
T ss_pred             EEecCCCcEEEEEEcCCCcEEEEEc-------CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEE
Confidence            888766 455599999999887765       7889999996543 332211                     0146789


Q ss_pred             EEcCCCCCCCC
Q 013871          332 WKPVSPDKFGD  342 (434)
Q Consensus       332 w~p~~~~~~~~  342 (434)
                      |+|++..|++.
T Consensus       670 ~spdg~~l~sg  680 (694)
T 3dm0_A          670 WSADGSTLFSG  680 (694)
T ss_dssp             ECTTSSEEEEE
T ss_pred             EcCCCCEEEEE
Confidence            99998888765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=4.3e-23  Score=204.04  Aligned_cols=246  Identities=10%  Similarity=0.168  Sum_probs=174.9

Q ss_pred             CCCCCeeeecCC-CcEEEEec-CCeEEEEeCCC----------CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCC
Q 013871           49 KTTWPSIRFSSD-EAVACRMA-TNEIQFFDTTD----------FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGS  116 (434)
Q Consensus        49 ~~~~~~~~~S~d-~~~la~~~-~~~i~v~~~~~----------~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~  116 (434)
                      ...+.+++|+|+ +.+||++. ++.|++|++..          .........|...+.+++|+|++...+++     ++.
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s-----~~~  202 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS-----ASD  202 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE-----ECT
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE-----EeC
Confidence            367789999997 67888875 67999999865          23333344556679999999996546654     355


Q ss_pred             CceEEEEEcCCCCCC-C---ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--ceeee
Q 013871          117 PASVQIYACGKDLQS-Q---PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLV  190 (434)
Q Consensus       117 ~~~v~i~~~~~~~~~-~---~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v  190 (434)
                      ++.|++|++...... .   .......+...+..+.|+|++..+++.++  .|..         |+.+++...  .....
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~--~dg~---------i~i~d~~~~~~~~~~~  271 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQK---------LMIWDTRNNNTSKPSH  271 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE--TTSE---------EEEEETTCSCSSSCSE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe--CCCe---------EEEEECCCCCCCccee
Confidence            689999999762111 1   13344567778899999996555544432  2222         333333322  11222


Q ss_pred             ec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEE
Q 013871          191 PL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA  264 (434)
Q Consensus       191 ~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~  264 (434)
                      .+ .+..+|.+++|+|++..+++ +|..++.|.+||++.  .++..+  |...+.++.|+|+|+ +|++++   .+|.|.
T Consensus       272 ~~~~~~~~v~~i~~~p~~~~~l~-tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~---~d~~i~  347 (430)
T 2xyi_A          272 TVDAHTAEVNCLSFNPYSEFILA-TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG---TDRRLH  347 (430)
T ss_dssp             EEECCSSCEEEEEECSSCTTEEE-EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE---TTSCCE
T ss_pred             EeecCCCCeEEEEeCCCCCCEEE-EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe---CCCcEE
Confidence            22 45789999999999986444 578899999999974  344444  789999999999996 577777   557999


Q ss_pred             EEEccC--------------CEEEEEeeCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecCceee
Q 013871          265 FWDYVD--------------GKQLGTTRAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       265 iwd~~~--------------~~~i~~~~~~--~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~g~~~~  320 (434)
                      |||+..              .+.+..+.+|  .+..++|+|++. +|++++.      |+.|+||++....+.
T Consensus       348 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~------dg~i~iw~~~~~~~~  414 (430)
T 2xyi_A          348 VWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE------DNIMQVWQMAENVYN  414 (430)
T ss_dssp             EEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET------TSEEEEEEECHHHHC
T ss_pred             EEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC------CCCEEEeEccccccc
Confidence            999986              3566666665  467799999999 8888888      999999999776544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=4.1e-23  Score=203.43  Aligned_cols=242  Identities=14%  Similarity=0.191  Sum_probs=184.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.++++++.+..+.   ..+  ..++.++.+|+++. ++.+++|+....
T Consensus       150 V~sv~fspdg~~lasgs-----~Dg~v~iWd~~~~~~~~~~~~h~---~~v--~~~s~~~~~l~sgs~d~~i~~~d~~~~  219 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---ARV--GSLSWNSYILSSGSRSGHIHHHDVRVA  219 (420)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCE--EEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCeEEEEEcCCCcEEEEEeCCC---Cce--EEEeeCCCEEEEEeCCCceeEeeeccc
Confidence            78999999999999999     89999999999999999887653   444  34555788898885 679999998764


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013871           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ... .....+...+..+.++|+ +..++..     +.++.+++|++..... ...+.....+...+..+.|+|.+..+++
T Consensus       220 ~~~~~~~~~h~~~~~~~~~~~~-g~~l~s~-----~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la  293 (420)
T 4gga_A          220 EHHVATLSGHSQEVCGLRWAPD-GRHLASG-----GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  293 (420)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEE
T ss_pred             ceeeEEecccccceeeeeecCC-CCeeeee-----eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEE
Confidence            332 233455677899999998 4555532     4567899999876321 2234556667788899999999988877


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~  235 (434)
                      .+....|.+.+.|         ++... .....+.....+.++.|+|+++.+++.+|+.++.|.|||.. ...+..+  |
T Consensus       294 ~~~gs~D~~I~iw---------d~~t~-~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          294 TGGGTSDRHIRIW---------NVCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             EEECTTTCEEEEE---------ETTTT-EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             EEeecCCCEEEEE---------eCCcc-ccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            7665556555433         33332 23333444678999999999999998888889999999995 5566666  7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .+.|++++|||||++|++|+   .||+|+|||+.+..
T Consensus       364 ~~~V~~l~~spdg~~l~S~s---~D~tvriWdv~~~~  397 (420)
T 4gga_A          364 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFELD  397 (420)
T ss_dssp             SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCSS
T ss_pred             CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCCC
Confidence            89999999999999999999   56799999987653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.5e-24  Score=213.19  Aligned_cols=250  Identities=11%  Similarity=0.038  Sum_probs=175.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+|+|||||++|||.+     .|++|+  |...++.+   .+   |...+.+++|+|||      .++.+.+|+.....
T Consensus        18 v~sv~~SpDG~~iASas-----~D~TV~--d~~~~~~l---~g---h~~~v~~V~FsPdg------~~~~~~~~~~~~~~   78 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTF-----PDISIG--QPKYAKDI---NC---NSKNLFHVKEFPLE------FENKLDFELAQQNG   78 (588)
T ss_dssp             SCCEEECTTSCEEEECS-----SSEEEE--EECCCSCC---SS---BGGGTEEEEEECCC------CCCTTTTSCCCSSC
T ss_pred             EEEEEECCCCCEEEEEc-----CCceee--ccccccee---cC---CCccEEEEEECCCC------CcceEEEEeCCCce
Confidence            68999999999999998     889999  77666554   22   33556699999999      44555555543211


Q ss_pred             Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013871           82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG  155 (434)
Q Consensus        82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~  155 (434)
                         ... .+.+.|.+++|||+ +..+|+.     +.++.|+||+..     ..+.... +..     .+.+++|||||+.
T Consensus        79 ---~~~~~~~~~V~~vawSPd-G~~LAs~-----s~dg~V~iwd~~-----~~l~~l~-~~~~~~~~sv~svafSPDG~~  143 (588)
T 2j04_A           79 ---LLNSQPVCYPRVCKPSPI-DDWMAVL-----SNNGNVSVFKDN-----KMLTNLD-SKGNLSSRTYHCFEWNPIESS  143 (588)
T ss_dssp             ---SSTTSCSCCEEEEEECSS-SSCEEEE-----ETTSCEEEEETT-----EEEEECC-CSSCSTTTCEEEEEECSSSSC
T ss_pred             ---EeecCCCCcEEEEEECCC-CCEEEEE-----eCCCcEEEEeCC-----ceeeecc-CCCccccccEEEEEEcCCCCE
Confidence               111 22567999999999 5666643     456789999952     3444444 443     4779999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcce--------eeee---cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--------GLVP---LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--------~~v~---l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      |+...   .|.+.+       ||.+.  +...        ..+.   -.+...|.+++|+|||  ++  ++..|+.+++|
T Consensus       144 LAsgs---~DGtVk-------IWd~~--~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La--ass~D~tVrlW  207 (588)
T 2j04_A          144 IVVGN---EDGELQ-------FFSIR--KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV--AALSNNSVFSM  207 (588)
T ss_dssp             EEEEE---TTSEEE-------EEECC--CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE--EEETTCCEEEE
T ss_pred             EEEEc---CCCEEE-------EEECC--CCccccccceeeeeeecccccccccEEEEEEcCCc--EE--EEeCCCeEEEE
Confidence            76642   444444       33332  2210        1111   2235799999999999  44  46668999999


Q ss_pred             eccccee----E---EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE--CCCCCE
Q 013871          225 NKKCRPI----L---ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW--SPDGRY  293 (434)
Q Consensus       225 d~~~~~~----~---~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w--spdg~~  293 (434)
                      |+..+..    .   ..|...|.+++|+  |+.|++++ +   |.|++||+.+++......+|  .+..++|  +|||..
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~---~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P---GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI  281 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S---SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C---CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence            9975542    2   2466789999999  78888886 2   69999999998773333244  5666999  999999


Q ss_pred             EEEEEcCCceeeCCcEEEEee
Q 013871          294 FMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       294 l~tas~~prl~~D~~i~iw~~  314 (434)
                      |++|..      ||+ ++|.+
T Consensus       282 La~a~e------dG~-klw~~  295 (588)
T 2j04_A          282 LLMSNK------TSY-KVLLE  295 (588)
T ss_dssp             EEECSS------CEE-EEEES
T ss_pred             EEEEcC------CCC-EEEee
Confidence            999997      777 77775

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.92  E-value=1.4e-22  Score=197.04  Aligned_cols=260  Identities=16%  Similarity=0.211  Sum_probs=187.0

Q ss_pred             CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC------CceeeeeecCCeeEEEEeCC----CC--CeEEEEecCCC
Q 013871           48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP------KGILYRLRVPGVAAFEVSKA----PG--SHVAVFVPESK  114 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~------~~~~~~~~~~~v~~~~~sp~----~~--~~ia~~~~~~~  114 (434)
                      |...+.+++|+|  ++|+++ .++.|++|++....      .......+...|.++.|+|+    +.  ..+++     .
T Consensus        15 h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s-----~   87 (397)
T 1sq9_A           15 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT-----T   87 (397)
T ss_dssp             SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE-----E
T ss_pred             hhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE-----E
Confidence            457888999999  677766 57899999998765      23334455668999999997    40  33433     2


Q ss_pred             CCCceEEEEEcCCCCCCCc-----eeeeeec-----ccceeEEEEC----CCCCe-EEEEEEecccccCceeecceeEEE
Q 013871          115 GSPASVQIYACGKDLQSQP-----LARRSFF-----RCSTVQLNWN----RGSTG-LLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~-----i~~~~~~-----~~~~~~~~ws----~~G~~-l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++.|++|++..   ...     +.....+     ...+..+.|+    |+|.. |++. +  .|...       .+|.
T Consensus        88 ~~dg~i~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~--~dg~i-------~iwd  154 (397)
T 1sq9_A           88 SFSGDLLFYRITR---EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-D--VKGTT-------YIWK  154 (397)
T ss_dssp             ETTSCEEEEEEEE---CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-E--TTSCE-------EEEE
T ss_pred             cCCCCEEEEEccC---CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-e--CCCcE-------EEEe
Confidence            3457899999987   454     6666667     5788999999    99998 5543 2  23222       2343


Q ss_pred             Eee------CCccee-----eee------cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-----C-
Q 013871          180 LTT------DGTHEG-----LVP------LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-----G-  235 (434)
Q Consensus       180 l~~------~~~~~~-----~v~------l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-----~-  235 (434)
                      +..      ... ..     .+.      ..+...|.+++|+|++ .|+  ++..++.|.+||++. ..+..+     | 
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~h~  230 (397)
T 1sq9_A          155 FHPFADESNSLT-LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA--TGFNNGTVQISELSTLRPLYNFESQHSMI  230 (397)
T ss_dssp             EESSSSHHHHTT-TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE--EECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred             CCccccccccce-eeccCcceeeeeeccccCCCCCceEEEECCCc-eEE--EEeCCCcEEEEECCCCceeEEEecccccc
Confidence            332      111 11     111      2247789999999999 666  578899999999973 444443     4 


Q ss_pred             --CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-------------C--CceEEEECCCCCEEEEEE
Q 013871          236 --SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-------------E--CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       236 --~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-------------~--~~~~~~wspdg~~l~tas  298 (434)
                        ...+.+++|+|+|++|++++.++..|.|++||+.+++.+..+..             |  .+..++|+|+|++|++++
T Consensus       231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  310 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  310 (397)
T ss_dssp             CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe
Confidence              78899999999999999998431127999999999988888875             4  566799999999999999


Q ss_pred             cCCceeeCCcEEEEeec-Cceeeeee-----------------------cccceeeEEEcCCC
Q 013871          299 TAPRLQIDNGIKIFHHN-GSLFFKKM-----------------------FDKLFQAEWKPVSP  337 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~-g~~~~~~~-----------------------~~~~~~~~w~p~~~  337 (434)
                      .      |+.|+||++. ++++....                       ...+..+.|.|++.
T Consensus       311 ~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          311 W------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             T------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             C------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence            9      9999999994 55555444                       56699999999973

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.4e-22  Score=201.37  Aligned_cols=253  Identities=13%  Similarity=0.057  Sum_probs=182.8

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---Cceeeee---------------------------------------
Q 013871           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---KGILYRL---------------------------------------   88 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---~~~~~~~---------------------------------------   88 (434)
                      .+.+++|++||++|+++.++.|++|++.+..   .......                                       
T Consensus         6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK   85 (450)
T ss_dssp             CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred             cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence            4568999999999998889999999987654   1111110                                       


Q ss_pred             ---------------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC--CCCCCCceeeee--ecccceeEEEE
Q 013871           89 ---------------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG--KDLQSQPLARRS--FFRCSTVQLNW  149 (434)
Q Consensus        89 ---------------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~--~~~~~~~i~~~~--~~~~~~~~~~w  149 (434)
                                     +...|.+++|+|++..++++     ++.++.|+||++.  .   +..+....  .+...+..+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-----~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~~~v~~~~~  157 (450)
T 2vdu_B           86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIAC-----ADSDKSLLVFDVDKTS---KNVLKLRKRFCFSKRPNAISI  157 (450)
T ss_dssp             --------------CCCCCEEEEEECTTSSEEEEE-----EGGGTEEEEEEECSSS---SSCEEEEEEEECSSCEEEEEE
T ss_pred             ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEE-----ECCCCeEEEEECcCCC---CceeeeeecccCCCCceEEEE
Confidence                           11158999999994333343     2356799999998  5   56666554  44577889999


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee----eecCCCCCeEEEEECcC---CCEEEEEEccCCCeEE
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL----VPLRKEGPVHDVQWSYS---GSEFAVVYGFMPASAT  222 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~----v~l~~~~~i~~v~wspd---g~~~av~~g~~~~~v~  222 (434)
                      +|+|+.|++..   .+       |  .++.+++.......    ....+.+.|.+++|+|+   ++.|+  ++..|+.|+
T Consensus       158 sp~~~~l~~~~---~~-------g--~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~--s~~~d~~i~  223 (450)
T 2vdu_B          158 AEDDTTVIIAD---KF-------G--DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFII--TSDRDEHIK  223 (450)
T ss_dssp             CTTSSEEEEEE---TT-------S--EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEE--EEETTSCEE
T ss_pred             cCCCCEEEEEe---CC-------C--cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEE--EEcCCCcEE
Confidence            99999876542   11       1  24555443322111    11235789999999999   77777  577899999


Q ss_pred             EEeccc-ceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC------------------
Q 013871          223 IFNKKC-RPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------------------  280 (434)
Q Consensus       223 l~d~~~-~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~------------------  280 (434)
                      +||++. ..+.. +  |...+++++|+ +|++|++++   .+|.|+|||+.+++++..+..+                  
T Consensus       224 vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          224 ISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG---GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             EEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE---SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-----
T ss_pred             EEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe---CCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccc
Confidence            999964 44444 2  67899999999 999999999   5679999999999887776521                  


Q ss_pred             ---------CceEEEECCCCCEEEEEE-cCCceeeCCcEEEEee--c-C---ceeeeeec-ccceeeEEEcC
Q 013871          281 ---------CSVTSEWSPDGRYFMTAT-TAPRLQIDNGIKIFHH--N-G---SLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       281 ---------~~~~~~wspdg~~l~tas-~~prl~~D~~i~iw~~--~-g---~~~~~~~~-~~~~~~~w~p~  335 (434)
                               .+..+.|+|||++|++++ .      |+.|+||++  . +   ..+..... ..+..+.|.|.
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~~~l~~~~~~------d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNLPFVAFFVEA------TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             -----CBCCCEEEEEECSSSSEEEEEETT------CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             ccccccceEEEEEEEEeCCCCEEEEEECC------CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence                     355699999999999999 6      999999999  3 2   22222221 57899999994

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.92  E-value=4.3e-22  Score=197.44  Aligned_cols=283  Identities=12%  Similarity=0.134  Sum_probs=207.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +++++|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+  +.+++++ .++.|++||+.+.....
T Consensus       124 ~~~~~g~~l~sg~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~  193 (445)
T 2ovr_B          124 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIH  193 (445)
T ss_dssp             EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEcCCEEEEEE-----CCCcEEEEECCCCcEEEEEcCCC---CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEE
Confidence            3566799999999     89999999999999998887653   566688887  5577776 57899999998765434


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....+...|.++.++++   .+++     .+.++.|++|++.+   ++.+.....+...+..+.|  +|..++...   .
T Consensus       194 ~~~~h~~~v~~~~~~~~---~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~  257 (445)
T 2ovr_B          194 TLYGHTSTVRCMHLHEK---RVVS-----GSRDATLRVWDIET---GQCLHVLMGHVAAVRCVQY--DGRRVVSGA---Y  257 (445)
T ss_dssp             EECCCSSCEEEEEEETT---EEEE-----EETTSEEEEEESSS---CCEEEEEECCSSCEEEEEE--CSSCEEEEE---T
T ss_pred             EECCCCCcEEEEEecCC---EEEE-----EeCCCEEEEEECCC---CcEEEEEcCCcccEEEEEE--CCCEEEEEc---C
Confidence            44456667889888753   3432     24568999999988   7778888888888889998  667655432   3


Q ss_pred             cccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcCee
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYN  240 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~  240 (434)
                      |...+         .++.... .....+ .+.+.|.+++|  ++..++  ++..++.|.+||++ ...+..+  +...+.
T Consensus       258 dg~i~---------iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~  323 (445)
T 2ovr_B          258 DFMVK---------VWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS  323 (445)
T ss_dssp             TSCEE---------EEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             CCEEE---------EEECCCC-cEeEEecCCCCceEEEEE--CCCEEE--EEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence            43333         3333222 222222 24688999999  777777  57789999999996 4445555  566666


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       241 ~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++.+  ++++|++++   .+|.|++||+.+++.+..+..   +  .+..++|+  +++|++++.      |+.|+||++.
T Consensus       324 ~~~~--~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~  390 (445)
T 2ovr_B          324 GMEL--KDNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSD------DGTVKLWDLK  390 (445)
T ss_dssp             EEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEET------TSEEEEEETT
T ss_pred             EEEE--eCCEEEEEe---CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeC------CCeEEEEECC
Confidence            6666  577999998   567999999999998888875   3  45557785  689999999      9999999984


Q ss_pred             -Cceeeee-------ecccceeeEEEcCCCCCCC
Q 013871          316 -GSLFFKK-------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       316 -g~~~~~~-------~~~~~~~~~w~p~~~~~~~  341 (434)
                       |+.+...       +...++.+.|+|.+..+..
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~  424 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  424 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEE
Confidence             5555544       2246899999998765544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=9.2e-23  Score=201.83  Aligned_cols=260  Identities=12%  Similarity=0.125  Sum_probs=188.9

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCce
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~   84 (434)
                      +++++|++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|  |+++|++++ +++|++||+.+.....
T Consensus       138 ~~~~d~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          138 CLQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             EEECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             EEEECCCEEEEEe-----CCCeEEEEeCCCCeEEEEEcCCC---CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3455999999999     89999999999999988887653   56668888  888888884 6899999998866544


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce---eeeeecccceeEEEECCCCCeEEEEEE
Q 013871           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i---~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ....+...|.++.|+++   .++.     ++.++.|++|++..   ...+   .....+...+..+.|  +|+.++... 
T Consensus       208 ~~~~h~~~v~~l~~~~~---~l~s-----~s~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-  273 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNNG---MMVT-----CSKDRSIAVWDMAS---PTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-  273 (435)
T ss_dssp             EECCCCSCEEEEECCTT---EEEE-----EETTSCEEEEECSS---SSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-
T ss_pred             EEcCCCCcEEEEEEcCC---EEEE-----eeCCCcEEEEeCCC---CCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-
Confidence            44556678999998753   3433     24567999999987   4433   455567777888888  677655432 


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--CCcC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP  238 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~  238 (434)
                        .|..         +..+++.........-.+.+.|.+++|+  ++.++  +|..++.|++||++ +..+..+  |...
T Consensus       274 --~dg~---------i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~g~~dg~i~iwd~~~~~~~~~~~~h~~~  338 (435)
T 1p22_A          274 --GDRT---------IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHEEL  338 (435)
T ss_dssp             --TTSE---------EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             --CCCe---------EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEE--EEeCCCeEEEEECCCCCEEEEEeCCcCc
Confidence              3333         3333333321111112346789999994  56666  57889999999997 4455555  6788


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE---------EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---------QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~---------~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      +.++.|  +|++|++++   .+|.|++||+.+++         .+..+.+|  .+..++|  ||.+|++++.      |+
T Consensus       339 v~~~~~--~~~~l~sg~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------Dg  405 (435)
T 1p22_A          339 VRCIRF--DNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD  405 (435)
T ss_dssp             EEEEEC--CSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred             EEEEEe--cCCEEEEEe---CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC------CC
Confidence            999999  789999998   56799999987655         77777766  4556888  8899999999      99


Q ss_pred             cEEEEeecCc
Q 013871          308 GIKIFHHNGS  317 (434)
Q Consensus       308 ~i~iw~~~g~  317 (434)
                      .|+||++...
T Consensus       406 ~i~iwd~~~~  415 (435)
T 1p22_A          406 TILIWDFLND  415 (435)
T ss_dssp             EEEEEC----
T ss_pred             EEEEEECCCC
Confidence            9999999664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=9.5e-23  Score=194.90  Aligned_cols=262  Identities=11%  Similarity=0.123  Sum_probs=185.3

Q ss_pred             CCCCCCeeeecCCCcEEE-Eec----CCeEEEEeCCCCCCceeee-eecCCeeEEEEeCCC--CCeEEEEecCCCCCCce
Q 013871           48 TKTTWPSIRFSSDEAVAC-RMA----TNEIQFFDTTDFPKGILYR-LRVPGVAAFEVSKAP--GSHVAVFVPESKGSPAS  119 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la-~~~----~~~i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~~ia~~~~~~~~~~~~  119 (434)
                      |...+.+++|+||+..++ ++.    ++.|++|++.......... .+...|.+++|+|+.  +..+++     .+.++.
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~-----~~~dg~   91 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLAT-----GDFGGN   91 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEE-----EETTSC
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEE-----ecCCCe
Confidence            346778999999996554 442    6799999998755322222 355689999999984  355554     245678


Q ss_pred             EEEEEcCCCCCCC-ceeeeeecccceeEEE------ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec
Q 013871          120 VQIYACGKDLQSQ-PLARRSFFRCSTVQLN------WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       120 v~i~~~~~~~~~~-~i~~~~~~~~~~~~~~------ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l  192 (434)
                      |++|++..   .. .+.....+...+..+.      |+++|+.|+...   .|...         ..+++.........+
T Consensus        92 i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i---------~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEA---PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTV---------KVWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTS---CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCE---------EEECTTSCSSCSEEE
T ss_pred             EEEEeCCC---CCccEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeE---------EEEeCCCCCCcceec
Confidence            99999987   44 7777778888888885      578898765432   33333         333333221111111


Q ss_pred             C-----CCCCeEEEE----ECcCCCEEEEEEccCCCeEEEEecccceeEE--eCCcCeeEEEECC---CCCeEEEEecCC
Q 013871          193 R-----KEGPVHDVQ----WSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNP---KGKFLCLAGFGN  258 (434)
Q Consensus       193 ~-----~~~~i~~v~----wspdg~~~av~~g~~~~~v~l~d~~~~~~~~--~~~~~~~~i~~SP---~g~~l~~~~~~~  258 (434)
                      .     ....+.+++    |+|+++.|+  ++..++.|.+||++......  .+...++++.|+|   ++++|++++   
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---  231 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVC--AGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS---  231 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEE--EEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE---
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEE--EEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC---
Confidence            1     134788888    789999888  47778999999997654432  2688999999999   999999998   


Q ss_pred             CCCeEEEEEccCCEEEEEe-----eCC--CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeecC--------------
Q 013871          259 LPGDMAFWDYVDGKQLGTT-----RAE--CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNG--------------  316 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~-----~~~--~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~g--------------  316 (434)
                      .+|.|++||+.+++.+..+     .+|  .+..++|+|+|+ +|++++.      |+.|+||++..              
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~g~~~  305 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG------AGGLHLWKYEYPIQRSKKDSEGIEM  305 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET------TSEEEEEEEECCSCC--CCTTSCCC
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC------CCcEEEeecCCCcccccccCCCCcc
Confidence            5679999999876533222     244  566799999999 7899998      99999999963              


Q ss_pred             ------ceeee--eecccceeeEEEcCCCCCC
Q 013871          317 ------SLFFK--KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       317 ------~~~~~--~~~~~~~~~~w~p~~~~~~  340 (434)
                            +++..  .+...+..+.|.|++..++
T Consensus       306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  337 (357)
T 3i2n_A          306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC  337 (357)
T ss_dssp             CCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred             ccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence                  12222  2445799999999998887

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=2.4e-23  Score=218.95  Aligned_cols=312  Identities=12%  Similarity=0.041  Sum_probs=198.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------Ce
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~   71 (434)
                      +.+++|||||++|++ +     .|++|++||+.+|+....+..+......+..++|||||++|+++.+          +.
T Consensus        19 ~~~~~~spdg~~~~~-~-----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-E-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCBSSSSCBCCC-C-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             ccccEEcCCCcEEEE-e-----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            467899999998865 4     5789999999999877666543211113668999999999998854          68


Q ss_pred             EEEEeCCCCCCceeeee---ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-----
Q 013871           72 IQFFDTTDFPKGILYRL---RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-----  143 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-----  143 (434)
                      |.+||+.+... .....   +...+..++|||+ +..|++...      +.|.+|++..   +............     
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPd-G~~la~~~~------~~i~~~~~~~---g~~~~~~~~~~~~~~~~g  161 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPK-GQQLIFIFE------NNIYYCAHVG---KQAIRVVSTGKEGVIYNG  161 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSS-TTCEEEEET------TEEEEESSSS---SCCEEEECCCBTTTEEEE
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCC-CCEEEEEEC------CeEEEEECCC---CceEEEecCCCCCceECc
Confidence            99999987543 11111   1123778999999 556655432      4789999876   4433322222221     


Q ss_pred             -------------eeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCcc
Q 013871          144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTH  186 (434)
Q Consensus       144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~  186 (434)
                                   ...+.|||||+.|++....+.  ....|                        .....|+.+++.+..
T Consensus       162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS--RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT--TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             ccceeEEEEeccCcceEEECCCCCEEEEEEECCC--ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                         257999999999887653321  01110                        012367777776653


Q ss_pred             eeeeecCC-------CCCeEEEEECcCCCEEEEEEcc--CCCeEEEEecccceeEEe----CCcCee----EEEECCCCC
Q 013871          187 EGLVPLRK-------EGPVHDVQWSYSGSEFAVVYGF--MPASATIFNKKCRPILEL----GSGPYN----TVRWNPKGK  249 (434)
Q Consensus       187 ~~~v~l~~-------~~~i~~v~wspdg~~~av~~g~--~~~~v~l~d~~~~~~~~~----~~~~~~----~i~~SP~g~  249 (434)
                       ....+..       ...+.+++|||||+.+++....  .+..|.+||+.+.....+    +.+.+.    .++|||||+
T Consensus       240 -~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          240 -HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             -CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             -eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC
Confidence             2122221       4568899999999977654322  234789999865433222    233333    789999999


Q ss_pred             eEEEE-ecCCCCC------eEEEEE-ccCCE--EEEEee-CC-CceE-EEECCCCCEEEEEEcCCceeeC--CcEEEEee
Q 013871          250 FLCLA-GFGNLPG------DMAFWD-YVDGK--QLGTTR-AE-CSVT-SEWSPDGRYFMTATTAPRLQID--NGIKIFHH  314 (434)
Q Consensus       250 ~l~~~-~~~~~~g------~i~iwd-~~~~~--~i~~~~-~~-~~~~-~~wspdg~~l~tas~~prl~~D--~~i~iw~~  314 (434)
                      .|+++ +.  .+|      .|++|| ..+++  ++..+. ++ .+.. ++|||||++|++.+..     +  +.++||++
T Consensus       319 ~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~  391 (723)
T 1xfd_A          319 KFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-----DLPRRRQLYSA  391 (723)
T ss_dssp             SEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-----SCTTCCEEEEE
T ss_pred             eEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcC-----CCCcceEEEEE
Confidence            88875 32  234      678888 44444  133333 23 3443 6999999999888762     3  78999998


Q ss_pred             c--Cc-eeeee-----ecccceeeEEEcCCCCCC
Q 013871          315 N--GS-LFFKK-----MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       315 ~--g~-~~~~~-----~~~~~~~~~w~p~~~~~~  340 (434)
                      +  |. .....     +...+..+.|+|++..++
T Consensus       392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~  425 (723)
T 1xfd_A          392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFL  425 (723)
T ss_dssp             CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred             eCCCCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence            4  32 22211     234578899999887554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=8.6e-22  Score=184.66  Aligned_cols=262  Identities=11%  Similarity=0.077  Sum_probs=190.8

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +.+..+..+   ...+.+++| +|+.+|+++. ++.|++|++...........+...|.+++|+|+ +..+++     .+
T Consensus         9 ~~~~~l~~h---~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~-----~~   78 (313)
T 3odt_A            9 QLSATLKGH---DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSE-KELLLF-----GG   78 (313)
T ss_dssp             EEEEEECCC---SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETT-TTEEEE-----EE
T ss_pred             HHHHHhhCC---CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCC-CCEEEE-----ec
Confidence            455666554   377889999 8998888884 689999999775444444556678999999998 455554     24


Q ss_pred             CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC
Q 013871          116 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE  195 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~  195 (434)
                      .++.+++|++........+.....+...+..+.|  ++..++..   ..|....         .++ .+. .......+.
T Consensus        79 ~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~---------~~d-~~~-~~~~~~~~~  142 (313)
T 3odt_A           79 KDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAK---------VWK-EGS-LVYNLQAHN  142 (313)
T ss_dssp             TTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEE---------EEE-TTE-EEEEEECCS
T ss_pred             CCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEE---------EEc-CCc-EEEecccCC
Confidence            5678999999764434667777778888899999  46655432   1333333         222 121 111122347


Q ss_pred             CCeEEEEECc-CCCEEEEEEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          196 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       196 ~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      .++.+++|+| +++.++  ++..++.+.+||..... .... +...+.+++|+|+|+ +++++   .+|.|++||+.+++
T Consensus       143 ~~v~~~~~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~---~dg~i~i~d~~~~~  216 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFL--TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCS---NDGLIKLVDMHTGD  216 (313)
T ss_dssp             SCEEEEEEEETTTTEEE--EEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEE---TTSEEEEEETTTCC
T ss_pred             CceeEEEEccCCCCEEE--EEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEcc---CCCeEEEEECCchh
Confidence            8999999999 888877  46778999999954322 2222 678899999999999 77777   56799999999999


Q ss_pred             EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCC
Q 013871          273 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSP  337 (434)
Q Consensus       273 ~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~  337 (434)
                      .+..+..|  .+..++|+|+| .|++++.      |+.|+|||+ +++++...  +...+..+.|.|++.
T Consensus       217 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          217 VLRTYEGHESFVYCIKLLPNG-DIVSCGE------DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             EEEEEECCSSCEEEEEECTTS-CEEEEET------TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             hhhhhhcCCceEEEEEEecCC-CEEEEec------CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence            99888766  56679999999 5888888      999999998 45554443  445799999999987

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.91  E-value=1e-23  Score=204.04  Aligned_cols=236  Identities=11%  Similarity=0.107  Sum_probs=166.8

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC--CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF--PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~--~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      ..+.+++|+||+++|+++ .++.|++|++...  ........|...|.+++|+|++ ..++..     +.++.|++|++.
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~-----s~d~~v~vwd~~   85 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTC-----SQDRNAYVYEKR   85 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEE-----ETTSSEEEC---
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEE-----eCCCeEEEEEcC
Confidence            567799999999999998 5789999999764  2223344556689999999994 445432     456789999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc----eeeeecCCCCCeEEEE
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----EGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~----~~~v~l~~~~~i~~v~  202 (434)
                      .......+.....+...+..+.|+|+|+.|+...   .|...+         .++.....    ...+.-.+.+.|.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~---------iwd~~~~~~~~~~~~~~~~h~~~v~~~~  153 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVIS---------VCYFEQENDWWVSKHLKRPLRSTILSLD  153 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEE---------ECCC-----CCCCEEECSSCCSCEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEE---------EEEECCcccceeeeEeecccCCCeEEEE
Confidence            7211125556666888899999999999876542   333333         22222221    1122222578999999


Q ss_pred             ECcCCCEEEEEEccCCCeEEEEecc-------------------cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCe
Q 013871          203 WSYSGSEFAVVYGFMPASATIFNKK-------------------CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       203 wspdg~~~av~~g~~~~~v~l~d~~-------------------~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~  262 (434)
                      |+|+++.|+  ++..++.+++||++                   ...+..+ |...+++++|+|+|++|++++   .+|.
T Consensus       154 ~~~~~~~l~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---~d~~  228 (377)
T 3dwl_C          154 WHPNNVLLA--AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAG---HDSS  228 (377)
T ss_dssp             ECTTSSEEE--EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEE---TTTE
T ss_pred             EcCCCCEEE--EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEe---CCCc
Confidence            999999888  57778999999984                   2233333 677899999999999999998   5679


Q ss_pred             EEEEEccCCEE----EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          263 MAFWDYVDGKQ----LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       263 i~iwd~~~~~~----i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |+|||+.+++.    +..+..|  .+..++|+|||++|++++       |+.+.+|+..
T Consensus       229 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------~~~~~~~~~~  280 (377)
T 3dwl_C          229 VTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-------NYSPILLQGN  280 (377)
T ss_dssp             EC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES-------SSSEEEECCC
T ss_pred             EEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc-------CCcEEEEEeC
Confidence            99999998865    6666666  466799999999998876       5555588775

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.91  E-value=8.5e-22  Score=194.07  Aligned_cols=313  Identities=10%  Similarity=0.061  Sum_probs=212.4

Q ss_pred             ceEE---ecCCCcEEEEEecCC---------CCCCC--cEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecCCCcEEEE
Q 013871            3 LLLT---CLRVGLIIQTFQKSS---------TPQEK--NVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         3 ~~l~---fSP~g~~L~t~~~~~---------~~~d~--~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~d~~~la~   66 (434)
                      ..++   |+|++..+.......         +.+++  .|.+||..++  +.+..+...    ....+++|+|++.++++
T Consensus        64 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~  139 (433)
T 3bws_A           64 VEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG----FQPKSVRFIDNTRLAIP  139 (433)
T ss_dssp             EEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCEESSSSEEEEE
T ss_pred             EEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC----CCceEEEEeCCCeEEEE
Confidence            4566   899998887655321         12334  4444454445  455555543    22338899997777777


Q ss_pred             ec-CCeEEEEeCCCCCCceee-----eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871           67 MA-TNEIQFFDTTDFPKGILY-----RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      +. ++.|++||..+.......     ..+...|.+++|+|+ +..++.     ...++.|++|++..   .+.+.....+
T Consensus       140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s-----~~~d~~v~~~d~~~---~~~~~~~~~~  210 (433)
T 3bws_A          140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH-NELWVS-----QMQANAVHVFDLKT---LAYKATVDLT  210 (433)
T ss_dssp             BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEE-----EGGGTEEEEEETTT---CCEEEEEECS
T ss_pred             eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC-CEEEEE-----ECCCCEEEEEECCC---ceEEEEEcCC
Confidence            75 468999999875432211     123346889999887 344432     23457899999987   6777777777


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc----
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF----  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~----  216 (434)
                      ......+.|+|+|+.+++...  .|.         .++.++.... .....+...+.+..++|+|+|+.+++....    
T Consensus       211 ~~~~~~~~~~~~~~~l~~~~~--~~~---------~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~  278 (433)
T 3bws_A          211 GKWSKILLYDPIRDLVYCSNW--ISE---------DISVIDRKTK-LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ  278 (433)
T ss_dssp             SSSEEEEEEETTTTEEEEEET--TTT---------EEEEEETTTT-EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred             CCCeeEEEEcCCCCEEEEEec--CCC---------cEEEEECCCC-cEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc
Confidence            778889999999998765421  121         3555555443 333344445678999999999988864321    


Q ss_pred             --CCCeEEEEecccceeE-Ee-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013871          217 --MPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       217 --~~~~v~l~d~~~~~~~-~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                        .++.|.+||++...+. .+ +...+..++|+|+|+++++++.  .++.|.+||+.+++.+..+... .+..++|+|||
T Consensus       279 ~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg  356 (433)
T 3bws_A          279 ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG  356 (433)
T ss_dssp             CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred             ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence              3679999999754433 33 3557889999999987766543  4579999999999888877654 56679999999


Q ss_pred             CEEEEEEcCCce---------eeCCcEEEEee-cCceeeeee-cccceeeEEEcCCCCCCCC
Q 013871          292 RYFMTATTAPRL---------QIDNGIKIFHH-NGSLFFKKM-FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~prl---------~~D~~i~iw~~-~g~~~~~~~-~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++|++++.....         ..|+.|++||. +++.+.... ...+..+.|.|++..++..
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEE
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEE
Confidence            999998863110         01468999998 455554433 3467899999998877653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=3.1e-21  Score=187.42  Aligned_cols=246  Identities=10%  Similarity=0.024  Sum_probs=175.1

Q ss_pred             cceEEecCCCcEE-EEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-c-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLII-QTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-A-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L-~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~-~~~i~v~~~~   78 (434)
                      +.+++|||+|++| ++.+     .|+.|++||+.+++.+..+..+    ..+.+++|+||+++++.+ . ++.|++||+.
T Consensus        34 ~~~~~~s~dg~~l~~~~~-----~d~~i~v~d~~~~~~~~~~~~~----~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANA-----HSNDVSIIDTATNNVIATVPAG----SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             EEEEEECTTSSEEEEEEG-----GGTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             cceEEECCCCCEEEEECC-----CCCeEEEEECCCCeEEEEEECC----CCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence            5789999999988 4554     5789999999999998887664    355689999999987654 3 4799999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ....... ......+..++|+|++ ..+.+.    ....+.|.+|++.+   ++.+.....+ .....+.|+|+|+.|++
T Consensus       105 ~~~~~~~-~~~~~~~~~~~~s~dg-~~l~~~----~~~~~~v~~~d~~~---~~~~~~~~~~-~~~~~~~~~~dg~~l~~  174 (391)
T 1l0q_A          105 SNTVAGT-VKTGKSPLGLALSPDG-KKLYVT----NNGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (391)
T ss_dssp             TTEEEEE-EECSSSEEEEEECTTS-SEEEEE----ETTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             CCeEEEE-EeCCCCcceEEECCCC-CEEEEE----eCCCCEEEEEECCC---CcEEEEEecC-CCcceEEECCCCCEEEE
Confidence            7543221 1224468899999994 444322    23457999999977   5655555443 45578999999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEEeccc-ceeEEe-C
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIFNKKC-RPILEL-G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~-~~~~v~l~d~~~-~~~~~~-~  235 (434)
                      ...  .+         ..++.++.... .....+.....+..++|+|+|+++++.... .++.+.+||++. ..+..+ .
T Consensus       175 ~~~--~~---------~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          175 ANF--DS---------MSISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             EET--TT---------TEEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             EeC--CC---------CEEEEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            422  11         12555555443 233333345678999999999998874321 578999999974 344444 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ...+.+++|+|+|++|++++.  .++.|++||+.+++.+..+..+
T Consensus       243 ~~~~~~~~~s~dg~~l~~s~~--~d~~v~v~d~~~~~~~~~~~~~  285 (391)
T 1l0q_A          243 GPDPAGIAVTPDGKKVYVALS--FXNTVSVIDTATNTITATMAVG  285 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECS
T ss_pred             CCCccEEEEccCCCEEEEEcC--CCCEEEEEECCCCcEEEEEECC
Confidence            445788999999998865543  3479999999999988877654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.91  E-value=9.7e-22  Score=184.92  Aligned_cols=241  Identities=14%  Similarity=0.196  Sum_probs=180.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|++++     .|+.|+|||+.+++++..+..+.   ..  ...+++++.+++++. ++.+++|+....
T Consensus        70 V~~v~~~~~~~~l~sgs-----~Dg~v~iw~~~~~~~~~~~~~h~---~~--~~~~~~~~~~l~s~~~~~~~~~~~~~~~  139 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRNMTSHS---AR--VGSLSWNSYILSSGSRSGHIHHHDVRVA  139 (318)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS---SC--EEEEEEETTEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCcEEEeecCCceeEEEecCcc---ce--EEEeecCCCEEEEEecCCceEeeecCCC
Confidence            78999999999999999     89999999999999999887653   33  456788889999885 579999998764


Q ss_pred             CCc-eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEE
Q 013871           81 PKG-ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~-~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ... .....+...+..+.++++ +..++.     .+.++.|++|++.+... .........+...+..+.|++++..++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  213 (318)
T 4ggc_A          140 EHHVATLSGHSQEVCGLRWAPD-GRHLAS-----GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA  213 (318)
T ss_dssp             SCEEEEEECCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred             ceeEEEEcCccCceEEEEEcCC-CCEEEE-----EecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence            332 223345667888999998 455543     24567899999976321 1223344455667788999999988877


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~  235 (434)
                      +++...+.+.+.|.         .... ...........+..+.|+|+++.+++.+|..++.|++||++ ++.+..+  |
T Consensus       214 ~~~~~~~~~i~lwd---------~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH  283 (318)
T 4ggc_A          214 TGGGTSDRHIRIWN---------VCSG-ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  283 (318)
T ss_dssp             EEECTTTCEEEEEE---------TTTC-CEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             EEecCCCCEEEEEe---------cccc-cccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC
Confidence            76655554444332         2222 22222334678999999999999998888899999999996 5556666  7


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+.|++++|||+|++|++++   .||+|+|||+.+.
T Consensus       284 ~~~V~~l~~spdg~~l~S~s---~D~~v~iWd~~~~  316 (318)
T 4ggc_A          284 TSRVLSLTMSPDGATVASAA---ADETLRLWRCFEL  316 (318)
T ss_dssp             SSCEEEEEECTTSSCEEEEE---TTTEEEEECCSCC
T ss_pred             CCCEEEEEEcCCCCEEEEEe---cCCeEEEEECCCC
Confidence            89999999999999999999   6679999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=5.1e-23  Score=203.32  Aligned_cols=265  Identities=12%  Similarity=0.091  Sum_probs=180.3

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEEeCCC---C
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFFDTTD---F   80 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~~~~~---~   80 (434)
                      .|+|+|+.+++..           +|+ .+|+.+..+...  |...+.+++|+| |+++|++++ |++|+||++..   .
T Consensus        34 ~f~~~~~~~~~~~-----------~w~-~~g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~   99 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----------MGN-LRGKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG   99 (437)
T ss_dssp             GGCCCCCCCCCCC-----------GGG-CCCCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT
T ss_pred             hcCCccccccccc-----------ccc-ccceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC
Confidence            4788888776533           377 568888888332  347788999999 999999985 67999999865   2


Q ss_pred             CCc-eeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------ccceeE
Q 013871           81 PKG-ILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------RCSTVQ  146 (434)
Q Consensus        81 ~~~-~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------~~~~~~  146 (434)
                      ... .... .+...|.+++|+|+ +..+++     .+.++.|++|++.....++.+.....+            ......
T Consensus       100 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s-----~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (437)
T 3gre_A          100 EVYSSSLTYDCSSTVTQITMIPN-FDAFAV-----SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVR  173 (437)
T ss_dssp             CCCSCSEEEECSSCEEEEEECTT-SSEEEE-----EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEE
T ss_pred             cccceeeeccCCCCEEEEEEeCC-CCEEEE-----EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceE
Confidence            111 1122 35668999999997 455543     245679999999521003333222211            122233


Q ss_pred             EE--ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          147 LN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       147 ~~--ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      +.  |++++..|+...   .|..         +..+++... .....+.   +.+.|.+++|+|+++.|+  +|..++.|
T Consensus       174 ~~~~~~~~~~~l~~~~---~d~~---------i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~--s~~~dg~i  238 (437)
T 3gre_A          174 MRAFVNEEKSLLVALT---NLSR---------VIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLI--LGTTRGII  238 (437)
T ss_dssp             EEEEECSSCEEEEEEE---TTSE---------EEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEE--EEETTSCE
T ss_pred             EEEEEcCCCCEEEEEe---CCCe---------EEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEE--EEcCCCeE
Confidence            33  566776654432   2322         334444332 2222222   468999999999999988  57889999


Q ss_pred             EEEeccc-ceeEEe---CCcCeeEEEEC----CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------------
Q 013871          222 TIFNKKC-RPILEL---GSGPYNTVRWN----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------------  280 (434)
Q Consensus       222 ~l~d~~~-~~~~~~---~~~~~~~i~~S----P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------------  280 (434)
                      ++||++. ..+..+   +..++++++|+    |+|++|++++   .+|.|++||+.+++++..+.++             
T Consensus       239 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (437)
T 3gre_A          239 DIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE  315 (437)
T ss_dssp             EEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBC
T ss_pred             EEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEc---CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccc
Confidence            9999974 444443   56789999554    5688999988   5679999999999888877643             


Q ss_pred             ---------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          281 ---------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       281 ---------------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                                     .+..++|+ ++++|++++.      |+.|++||+.
T Consensus       316 ~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~------d~~i~~wd~~  358 (437)
T 3gre_A          316 KGLEELNFCGIRSLNALSTISVS-NDKILLTDEA------TSSIVMFSLN  358 (437)
T ss_dssp             SSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG------GTEEEEEETT
T ss_pred             cccccceecccccCCceEEEEEC-CceEEEecCC------CCeEEEEECC
Confidence                           24558899 8899999999      9999999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.91  E-value=3.7e-22  Score=197.34  Aligned_cols=241  Identities=13%  Similarity=0.174  Sum_probs=175.6

Q ss_pred             cceEEecCC-CcEEEEEecCCCCCCCcEEEEEcCC----------CcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-c
Q 013871            2 LLLLTCLRV-GLIIQTFQKSSTPQEKNVILWKTET----------GEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-A   68 (434)
Q Consensus         2 V~~l~fSP~-g~~L~t~~~~~~~~d~~v~iWd~~~----------g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~   68 (434)
                      |++|+|+|+ +.+|++++     .|+.|+|||+.+          ++.+..+..+.   ..+.+++|+|++. +|+++ .
T Consensus       131 v~~l~~~p~~~~~lat~~-----~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          131 VNRARYMPQNACVIATKT-----PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ---KEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             CSEEEEETTEEEEEEEEC-----SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS---SCCCCEEECTTSTTEEEEECT
T ss_pred             EEEEEECCCCCcEEEEEC-----CCCcEEEEECCCcccccCccccCCCcEEecCCC---CCeEEEEeCCCCCCeEEEEeC
Confidence            789999998 78999988     789999999986          55666666543   5666999999998 88887 4


Q ss_pred             CCeEEEEeCCCCCCc-------eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871           69 TNEIQFFDTTDFPKG-------ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        69 ~~~i~v~~~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      ++.|++|++......       .....+...|.+++|+|+++..+++.     +..+.|++|++........+.....+.
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV-----ADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE-----ETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE-----eCCCeEEEEECCCCCCCcceeEeecCC
Confidence            689999999763321       12223455799999999656666542     456799999998732125666667788


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      ..+..+.|+|+|..+++.++.  |..         +.++++.........+ .+.+.|.+++|+|+++.+++ ++..++.
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~--dg~---------v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~-s~~~d~~  345 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSA--DKT---------VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA-SSGTDRR  345 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEET--TSE---------EEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE-EEETTSC
T ss_pred             CCeEEEEeCCCCCCEEEEEeC--CCe---------EEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE-EEeCCCc
Confidence            889999999999976655432  222         3333333321222222 25789999999999976444 4677899


Q ss_pred             EEEEeccc---------------ceeEEe--CCcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccC
Q 013871          221 ATIFNKKC---------------RPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       221 v~l~d~~~---------------~~~~~~--~~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      |.+||+..               ..+..+  |...+++++|+|+++ +|++++   .+|.|.||++.+
T Consensus       346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s---~dg~i~iw~~~~  410 (430)
T 2xyi_A          346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS---EDNIMQVWQMAE  410 (430)
T ss_dssp             CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE---TTSEEEEEEECH
T ss_pred             EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE---CCCCEEEeEccc
Confidence            99999965               444444  577899999999999 777777   557999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=9.4e-24  Score=206.38  Aligned_cols=260  Identities=12%  Similarity=0.042  Sum_probs=160.2

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEe--ecCcCCCCCCeeeecC--------CCcEEEEec-CCeE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLF--QKNMTKTTWPSIRFSS--------DEAVACRMA-TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~--~~~~~~~~~~~~~~S~--------d~~~la~~~-~~~i   72 (434)
                      ...++|++++|++++     .|++|+|||+.+++......  ....|...|.+++|+|        |+++||+++ |++|
T Consensus        94 ~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           94 VNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             ---CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             eeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            345678888999999     89999999999987654322  2233557788999998        899999985 6799


Q ss_pred             EEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           73 QFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +|||+...........+...+.+++|+|++..+++.     .+.++.|++|++..   ++.......+.....       
T Consensus       169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~-----~~~d~~v~~wd~~t---~~~~~~~~~~~~~~~-------  233 (393)
T 4gq1_A          169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIV-----GERNGNIRIFDWTL---NLSAEENSQTELVKN-------  233 (393)
T ss_dssp             EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEE-----EETTSEEEEEETTC---CC----------CSC-------
T ss_pred             EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEe-----cCCCCEEEEEECCC---CcccccccccCCccc-------
Confidence            999987654333344456679999999985455554     35568999999976   333222111110000       


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeccccee
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~ws-pdg~~~av~~g~~~~~v~l~d~~~~~~  231 (434)
                       .. ++...  .....         ..         .....+...+..+.|+ |||+.++  ++..++.+.+||+.....
T Consensus       234 -~~-~~s~~--~~~~~---------~~---------~~~~~~~~~v~~v~~~~~dg~~l~--s~s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          234 -PW-LLTLN--TLPLV---------NT---------CHSSGIASSLANVRWIGSDGSGIL--AMCKSGAWLRWNLFANND  289 (393)
T ss_dssp             -CC-SEEEE--SGGGC------------------------CCSSSCSEEEEETTTTCEEE--EECTTSEEEEEEC-----
T ss_pred             -ce-EEecc--cccce---------ee---------eecccccccceeeeeecCCCCEEE--EEeCCCCEEEEECccCCC
Confidence             00 00000  00000         00         0001125678889886 7999888  578899999999853321


Q ss_pred             -EEe--CCc-------------------CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871          232 -LEL--GSG-------------------PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       232 -~~~--~~~-------------------~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                       ..+  +..                   .+..+.+.+.+++++++|.  .+|.|+|||+.+++.+.....+  .+..++|
T Consensus       290 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V~lwd~~~~~~~~~~~~~~~~V~svaf  367 (393)
T 4gq1_A          290 YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLIQLINTYEKDSNSIPIQLGMPIVDFCW  367 (393)
T ss_dssp             --------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEEEEEETTCTTCCEEEEECSSCEEEEEE
T ss_pred             CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEEEEEECCCCcEEEEecCCCCcEEEEEE
Confidence             111  111                   1222333334444444332  5689999999988655544433  5667999


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ||||++|++++       ++++.||++.|
T Consensus       368 spdG~~LA~as-------~~Gv~lvrL~g  389 (393)
T 4gq1_A          368 HQDGSHLAIAT-------EGSVLLTRLMG  389 (393)
T ss_dssp             CTTSSEEEEEE-------SSEEEEEEEGG
T ss_pred             cCCCCEEEEEe-------CCCeEEEEEeC
Confidence            99999999987       67888888765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=8e-21  Score=180.21  Aligned_cols=284  Identities=11%  Similarity=0.094  Sum_probs=185.1

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCC
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPK   82 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~   82 (434)
                      ..|+++++++.....    .++.|.+||+.+++.+..+....   ... .++|+||+++++...  ++.|.+||......
T Consensus         3 ~~~~~~~~~~~v~~~----~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQ----HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP   74 (331)
T ss_dssp             ----CCCCEEEEEEG----GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC
T ss_pred             eeEcCCCCEEEEEec----CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce
Confidence            467888777554431    57899999999999887776432   334 899999999666553  57999999987553


Q ss_pred             -ceeeeeecCCeeE-EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           83 -GILYRLRVPGVAA-FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        83 -~~~~~~~~~~v~~-~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                       ...... ...... ++|+|+ +..+++  ....+....|.+|++..   ++.+..... ......+.|+|+|++|++..
T Consensus        75 ~~~~~~~-~~~~~~~~~~s~d-g~~l~~--~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           75 KVVAIQE-GQSSMADVDITPD-DQFAVT--VTGLNHPFNMQSYSFLK---NKFISTIPI-PYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             EEEEEEE-CSSCCCCEEECTT-SSEEEE--CCCSSSSCEEEEEETTT---TEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred             eEEeccc-CCCCccceEECCC-CCEEEE--ecCCCCcccEEEEECCC---CCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence             222222 234455 899998 444442  22222334899999977   555554443 33457899999999876542


Q ss_pred             EecccccCceeecceeEEEEeeCCcce-e-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce---eEEe
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHE-G-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~-~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~---~~~~  234 (434)
                      ..  +..      ...+|.++..+... . ...+........++|+|||+++++. +..++.+.+||++. ..   +..+
T Consensus       147 ~~--~~~------~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~  217 (331)
T 3u4y_A          147 RS--SAN------TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAV  217 (331)
T ss_dssp             ET--TTT------EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEE
T ss_pred             cC--CCc------eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeec
Confidence            21  111      01233333222110 0 1112234567899999999988764 55678999999964 33   4444


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE--EEEeeCC---------CceEEEECCCCCEEEEEEcCCc
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ--LGTTRAE---------CSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~--i~~~~~~---------~~~~~~wspdg~~l~tas~~pr  302 (434)
                       .......++|+|||++|+++..+  ++.|.+||..+++.  +..+...         ....++|+|||++|++++..  
T Consensus       218 ~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--  293 (331)
T 3u4y_A          218 GTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI--  293 (331)
T ss_dssp             ECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--
T ss_pred             cCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC--
Confidence             34566889999999988877643  36899999999876  4443322         12237999999999888773  


Q ss_pred             eeeCCcEEEEeecCceee
Q 013871          303 LQIDNGIKIFHHNGSLFF  320 (434)
Q Consensus       303 l~~D~~i~iw~~~g~~~~  320 (434)
                         ++.|.||++.+..+.
T Consensus       294 ---~~~v~v~d~~~~~~~  308 (331)
T 3u4y_A          294 ---SRELKVFTISGKVVG  308 (331)
T ss_dssp             ---TTEEEEEETTSCEEE
T ss_pred             ---CCcEEEEEecCCccc
Confidence               679999999887543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=7.7e-23  Score=202.48  Aligned_cols=268  Identities=9%  Similarity=0.064  Sum_probs=183.3

Q ss_pred             CCCCeeeecC-CCcEEEEe-cCCeEEEEeCCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           50 TTWPSIRFSS-DEAVACRM-ATNEIQFFDTTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        50 ~~~~~~~~S~-d~~~la~~-~~~~i~v~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      ..+.+++|+| ++++||++ .|++|+|||+..........  .|...|.+++|+|.++..++.     .+.++.|++|++
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s-----~s~D~~v~iwd~  194 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYA-----SSMEGTTRLQDF  194 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEE-----ECSSSCEEEEET
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEE-----EeCCCEEEEeec
Confidence            5677999999 56788888 47899999987654333332  356679999999965566653     356789999999


Q ss_pred             CCCCCCCceeee--eecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE
Q 013871          126 GKDLQSQPLARR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       126 ~~~~~~~~i~~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w  203 (434)
                      ..   .......  .......+.+.|+++|..|+..   ..|..         ++++++.+.. ......+.+.|.+++|
T Consensus       195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~---------i~~wd~~~~~-~~~~~~h~~~v~~v~~  258 (435)
T 4e54_B          195 KG---NILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGN---------VILLNMDGKE-LWNLRMHKKKVTHVAL  258 (435)
T ss_dssp             TS---CEEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSB---------EEEEESSSCB-CCCSBCCSSCEEEEEE
T ss_pred             cC---CceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCc---------EeeeccCcce-eEEEecccceEEeeee
Confidence            65   2221111  1223345789999999986543   22322         3344444431 1111235789999999


Q ss_pred             CcCCCEEEEEEccCCCeEEEEecccce-eE-----EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          204 SYSGSEFAVVYGFMPASATIFNKKCRP-IL-----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       204 spdg~~~av~~g~~~~~v~l~d~~~~~-~~-----~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +|++..+++ ++..|+.|++||++... ..     ..|...|++++|+|+|++|++++   .+|.|+|||+.+++....+
T Consensus       259 ~p~~~~~~~-s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~---~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          259 NPCCDWFLA-TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD---QKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CTTCSSEEE-EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE---SSSCEEEEESSSSSSEEEE
T ss_pred             cCCCceEEE-EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc---CCCEEEEEECCCCccceEE
Confidence            999986554 57789999999986322 11     12678999999999999999999   5679999999988766555


Q ss_pred             eCC--------CceEEEECCCCCEEEEEEcCC-cee-----eCCcEEEEee-cCceeeee---ecccceee-EEEcCCCC
Q 013871          278 RAE--------CSVTSEWSPDGRYFMTATTAP-RLQ-----IDNGIKIFHH-NGSLFFKK---MFDKLFQA-EWKPVSPD  338 (434)
Q Consensus       278 ~~~--------~~~~~~wspdg~~l~tas~~p-rl~-----~D~~i~iw~~-~g~~~~~~---~~~~~~~~-~w~p~~~~  338 (434)
                      ..+        ....+.|+|++.+++++.... ...     -++.|+|||. +|+++...   +...+..+ .|+|++..
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~  414 (435)
T 4e54_B          335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT  414 (435)
T ss_dssp             CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred             ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence            433        233478999999988876421 111     1467999998 46665543   33456666 69999877


Q ss_pred             CCCC
Q 013871          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      |...
T Consensus       415 lasg  418 (435)
T 4e54_B          415 LASA  418 (435)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.90  E-value=8.8e-23  Score=195.64  Aligned_cols=233  Identities=8%  Similarity=0.097  Sum_probs=167.3

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecC-CCcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSS-DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~-d~~~la~~~-~~~i~v~   75 (434)
                      |.+++|||+    |++|++++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+| ++.+|+++. ++.|++|
T Consensus        72 v~~~~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~s~~~dg~i~iw  143 (366)
T 3k26_A           72 FYTCAWTYDSNTSHPLLAVAG-----SRGIIRIINPITMQCIKHYVGHG---NAINELKFHPRDPNLLLSVSKDHALRLW  143 (366)
T ss_dssp             EEEEEEEECTTTCCEEEEEEE-----TTCEEEEECTTTCCEEEEEESCC---SCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred             EEEEEeccCCCCCCCEEEEec-----CCCEEEEEEchhceEeeeecCCC---CcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            689999999    77999999     89999999999999988887543   6777999999 899999885 6799999


Q ss_pred             eCCCCCCceee---eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee----------------
Q 013871           76 DTTDFPKGILY---RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR----------------  136 (434)
Q Consensus        76 ~~~~~~~~~~~---~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~----------------  136 (434)
                      |+.........   ..+...|.++.|+|+ +..+++.     +.++.|++|++..   .+.+..                
T Consensus       144 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-----~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          144 NIQTDTLVAIFGGVEGHRDEVLSADYDLL-GEKIMSC-----GMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             ETTTTEEEEEECSTTSCSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCC
T ss_pred             EeecCeEEEEecccccccCceeEEEECCC-CCEEEEe-----cCCCCEEEEECCC---CccccccceeEEecCCCCcccc
Confidence            99875432222   235567999999998 4455432     4467899999976   322221                


Q ss_pred             ------------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-------------eeee
Q 013871          137 ------------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-------------GLVP  191 (434)
Q Consensus       137 ------------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-------------~~v~  191 (434)
                                  ...+...+..+.|+  |+.++..   ..|...+       +|.+  .....             ....
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~---~~d~~i~-------~wd~--~~~~~~~~~~~~~~~~~~~~~~  280 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK---SCENAIV-------CWKP--GKMEDDIDKIKPSESNVTILGR  280 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE---CSSSEEE-------EEEE--SSTTCCGGGCCTTCCCEEEEEE
T ss_pred             cceeeccCccccccCCcceEEEEEEc--CCEEEEE---ecCCEEE-------EEeC--CCccccccccccCCcchheecc
Confidence                        12266778889998  5654432   1233322       2322  22111             0111


Q ss_pred             -cCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc-----eeEEe--C--CcCeeEEEECCCCCeEEEEecCCC
Q 013871          192 -LRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILEL--G--SGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       192 -l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~-----~~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                       ..+...|.+++|+|+  ++.|+  +|..++.|.+||++..     ....+  +  ...+++++|+|+|++|++++   .
T Consensus       281 ~~~~~~~v~~~~~s~~~~~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~  355 (366)
T 3k26_A          281 FDYSQCDIWYMRFSMDFWQKMLA--LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC---D  355 (366)
T ss_dssp             EECSSCCSSCCCCEECTTSSEEE--EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE---T
T ss_pred             ccccCCcEEEEEEcCCCCCcEEE--EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe---C
Confidence             123568899999999  98888  5788999999999643     22233  3  68999999999999999999   6


Q ss_pred             CCeEEEEEccC
Q 013871          260 PGDMAFWDYVD  270 (434)
Q Consensus       260 ~g~i~iwd~~~  270 (434)
                      +|.|+|||+.+
T Consensus       356 dg~i~iwd~~~  366 (366)
T 3k26_A          356 DASIWRWDRLR  366 (366)
T ss_dssp             TSEEEEEEC--
T ss_pred             CCEEEEEEecC
Confidence            67999999853

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=4.9e-21  Score=189.82  Aligned_cols=264  Identities=11%  Similarity=0.136  Sum_probs=193.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++++|+  +++|++++     .|+.|+|||+.+++.+..+..+.   ..+.++.|+  +.+++++ .++.|++||+...
T Consensus       162 v~~~~~~--~~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          162 VWSSQMR--DNIIISGS-----TDRTLKVWNAETGECIHTLYGHT---STVRCMHLH--EKRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             EEEEEEE--TTEEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred             EEEEEec--CCEEEEEe-----CCCeEEEEECCcCcEEEEECCCC---CcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence            6788887  67999999     89999999999999988887643   566688884  5667666 5789999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...|.++.+  + +..+++     ++.++.|++|++.+   ...+.....+...+..+.|  +|..++...
T Consensus       230 ~~~~~~~~~~~~v~~~~~--~-~~~l~~-----~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~--~~~~l~~~~  296 (445)
T 2ovr_B          230 QCLHVLMGHVAAVRCVQY--D-GRRVVS-----GAYDFMVKVWDPET---ETCLHTLQGHTNRVYSLQF--DGIHVVSGS  296 (445)
T ss_dssp             CEEEEEECCSSCEEEEEE--C-SSCEEE-----EETTSCEEEEEGGG---TEEEEEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred             cEEEEEcCCcccEEEEEE--C-CCEEEE-----EcCCCEEEEEECCC---CcEeEEecCCCCceEEEEE--CCCEEEEEe
Confidence            544444556667888888  3 344443     24467899999987   7777777788888889998  677755432


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe-----
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL-----  234 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~-----  234 (434)
                         .|...         ..++............+...+.++.++  ++.++  +|..++.|.+||++ +..+..+     
T Consensus       297 ---~d~~i---------~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~  360 (445)
T 2ovr_B          297 ---LDTSI---------RVWDVETGNCIHTLTGHQSLTSGMELK--DNILV--SGNADSTVKIWDIKTGQCLQTLQGPNK  360 (445)
T ss_dssp             ---TTSCE---------EEEETTTCCEEEEECCCCSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECSTTS
T ss_pred             ---CCCeE---------EEEECCCCCEEEEEcCCcccEEEEEEe--CCEEE--EEeCCCeEEEEECCCCcEEEEEccCCC
Confidence               34333         333333322111112346677777774  56666  57789999999995 4445554     


Q ss_pred             CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-----CC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          235 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       235 ~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-----~~--~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      +...++++.|+  +++|++++   .+|.|++||+.+++.+..+.     .+  .+..++|+|+|.+|++++.      |+
T Consensus       361 ~~~~v~~~~~~--~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~------dg  429 (445)
T 2ovr_B          361 HQSAVTCLQFN--KNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR------NG  429 (445)
T ss_dssp             CSSCEEEEEEC--SSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS------SS
T ss_pred             CCCCEEEEEEC--CCEEEEEe---CCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc------CC
Confidence            56789999996  68999998   66799999999998887772     22  4566999999999999998      88


Q ss_pred             c----EEEEeecCc
Q 013871          308 G----IKIFHHNGS  317 (434)
Q Consensus       308 ~----i~iw~~~g~  317 (434)
                      .    +.|||+...
T Consensus       430 ~~~~~l~v~df~~~  443 (445)
T 2ovr_B          430 TEETKLLVLDFDVD  443 (445)
T ss_dssp             SSCCEEEEEECCCC
T ss_pred             CCccEEEEEECCCC
Confidence            7    999998754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.90  E-value=1.3e-22  Score=198.44  Aligned_cols=239  Identities=13%  Similarity=0.091  Sum_probs=173.6

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCC-------cEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCe
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETG-------EAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g-------~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~   71 (434)
                      |.+++||| ++++|++++     .|+.|+|||+.++       +.+..+..+.   ..+.+++|+|++ .+|+++ .++.
T Consensus        84 V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           84 VLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHT---KRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             EEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCS---SCEEEEEECSSBTTEEEEEETTSC
T ss_pred             EEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCC---CeEEEEEECcCCCCEEEEEcCCCE
Confidence            78999999 999999999     8999999999988       5566666543   677799999998 588777 5689


Q ss_pred             EEEEeCCCCCCceee--eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc-eeEE
Q 013871           72 IQFFDTTDFPKGILY--RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS-TVQL  147 (434)
Q Consensus        72 i~v~~~~~~~~~~~~--~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~-~~~~  147 (434)
                      |++||+.........  ..+...|.+++|+|++ ..+++-     +.++.|++|++.+   ++.+... ..+... ...+
T Consensus       156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-----~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~  226 (402)
T 2aq5_A          156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTS-----CRDKRVRVIEPRK---GTVVAEKDRPHEGTRPVHA  226 (402)
T ss_dssp             EEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEE-----ETTSEEEEEETTT---TEEEEEEECSSCSSSCCEE
T ss_pred             EEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEE-----ecCCcEEEEeCCC---CceeeeeccCCCCCcceEE
Confidence            999999875432222  2356679999999984 444432     4567999999987   6666665 455544 6889


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      .|+|+|..|++..+...|.         .+..+++....  .....+.....+..++|+|+++.+++ +|..++.|.+||
T Consensus       227 ~~~~~~~~l~~g~~~~~d~---------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~g~~dg~i~i~d  296 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSER---------QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYL-CGKGDSSIRYFE  296 (402)
T ss_dssp             EECSTTEEEEEEECTTCCE---------EEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEE-EETTCSCEEEEE
T ss_pred             EEcCCCcEEEEeccCCCCc---------eEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEE-EEcCCCeEEEEE
Confidence            9999998665432111222         23444443321  22334455778999999999999876 466789999999


Q ss_pred             cccce--eEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE
Q 013871          226 KKCRP--ILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       226 ~~~~~--~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +....  +..+    +..++.+++|+|+|.+++++     ++.+++|++.+++
T Consensus       297 ~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~-----~~~~~~~~l~~~~  344 (402)
T 2aq5_A          297 ITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK-----CEIARFYKLHERK  344 (402)
T ss_dssp             ECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG-----TEEEEEEEEETTE
T ss_pred             ecCCCcceEeecccccCCcccceEEecccccceec-----ceeEEEEEcCCCc
Confidence            97443  3322    46889999999999987642     2589999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.8e-22  Score=191.05  Aligned_cols=266  Identities=8%  Similarity=0.010  Sum_probs=179.3

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC----
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF----   80 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~----   80 (434)
                      .+++++++|+|++     .|+.|+|||+.+++.+..+..     ..+.++.|+|+   ++++ .|++|++|+....    
T Consensus        43 ~~~~d~~~l~sg~-----~Dg~v~iwd~~~~~~~~~~~~-----~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           43 SMYYDKWVCMCRC-----EDGALHFTQLKDSKTITTITT-----PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSEEEEEEEEEE-----ETTEEEEEEESSSSCEEEEEE-----ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhcCCCCEEEEEC-----CCCcEEEEECCCCcEEEEEec-----CCceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence            4567899999999     899999999999998888763     34457889988   5555 5789999987631    


Q ss_pred             --CCceeeee----ecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee-ecccceeEEEECC
Q 013871           81 --PKGILYRL----RVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNR  151 (434)
Q Consensus        81 --~~~~~~~~----~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~  151 (434)
                        ........    +...|.+++|+|  + +..++.     .+.++.|++|++.+   +..+.... .+...+.++.|+|
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s-----~s~dg~i~~wd~~~---~~~~~~~~~~~~~~i~~~~~~p  180 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVN-TEYFIW-----ADNRGTIGFQSYED---DSQYIVHSAKSDVEYSSGVLHK  180 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC----CCEEEE-----EETTCCEEEEESSS---SCEEEEECCCSSCCCCEEEECT
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCC-CCEEEE-----EeCCCcEEEEECCC---CcEEEEEecCCCCceEEEEECC
Confidence              11111111    124699999999  7 444543     24567999999987   55544432 2344678999999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR  229 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~  229 (434)
                      +|..|+..   ..|...         ..+++......  .+...+.++|.+++|+|+|..|+.  +. ++.|++||++..
T Consensus       181 dg~~lasg---~~dg~i---------~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          181 DSLLLALY---SPDGIL---------DVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKD  245 (343)
T ss_dssp             TSCEEEEE---CTTSCE---------EEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSS
T ss_pred             CCCEEEEE---cCCCEE---------EEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCC
Confidence            99976543   233333         33333333222  233335789999999999999985  44 349999999743


Q ss_pred             -eeEEe-----CCcCee--EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECC---CCCEEEEEE
Q 013871          230 -PILEL-----GSGPYN--TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSP---DGRYFMTAT  298 (434)
Q Consensus       230 -~~~~~-----~~~~~~--~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wsp---dg~~l~tas  298 (434)
                       .+..+     +...++  +++|+|+|++|++++.+  ++.|.||++++.......  ..+..+.|+|   +++.|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~  321 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVC  321 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEe
Confidence             22222     223444  69999999999998741  469999998655322211  2344578999   999999999


Q ss_pred             cCCceeeCCcEEEEeecCce
Q 013871          299 TAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       299 ~~prl~~D~~i~iw~~~g~~  318 (434)
                      .      |+.+.++-.++..
T Consensus       322 ~------d~~~~~~~~~~~~  335 (343)
T 3lrv_A          322 G------DGGIAAILKTNDS  335 (343)
T ss_dssp             E------TTEEEEEEECSSE
T ss_pred             c------CCceEEEEecCCe
Confidence            9      9999999887764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.8e-22  Score=204.10  Aligned_cols=259  Identities=8%  Similarity=-0.041  Sum_probs=175.6

Q ss_pred             CCCCeeeecCCC---------cEEEEec--------------------CCeEEEEeCCCCCCce----eeeeecCCeeEE
Q 013871           50 TTWPSIRFSSDE---------AVACRMA--------------------TNEIQFFDTTDFPKGI----LYRLRVPGVAAF   96 (434)
Q Consensus        50 ~~~~~~~~S~d~---------~~la~~~--------------------~~~i~v~~~~~~~~~~----~~~~~~~~v~~~   96 (434)
                      ..+.+++|+|++         ++||++.                    |++|+||++.......    ....+...|..+
T Consensus       134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v  213 (524)
T 2j04_B          134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL  213 (524)
T ss_dssp             C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred             CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence            455588999886         7777642                    3589999986643211    122335679999


Q ss_pred             EEeCCC-----CCeEEEEecCCCCCCceEEEEEcCCCCC--------CCceeeeeecccceeEEEECCCCCeEEEEEEec
Q 013871           97 EVSKAP-----GSHVAVFVPESKGSPASVQIYACGKDLQ--------SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD  163 (434)
Q Consensus        97 ~~sp~~-----~~~ia~~~~~~~~~~~~v~i~~~~~~~~--------~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~  163 (434)
                      +|+|++     ..++|.     .+.++.|+||++.....        ..+......+...+.++.|++++ .|+   +..
T Consensus       214 ~wsp~~~~~~~~~~LAs-----~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~la---sgs  284 (524)
T 2j04_B          214 KWHEGCHAPHLVGCLSF-----VSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVV---CGF  284 (524)
T ss_dssp             EECSSCCCSSSSCEEEE-----EETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEE---EEE
T ss_pred             EECCCCCCCCCCceEEE-----EecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEE---EEe
Confidence            999972     245654     34567999999976310        11233455677888999999864 332   222


Q ss_pred             ccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEE--EECcCC-CEEEEEEccCCCeEEEEecccc-ee--EEeCC
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDV--QWSYSG-SEFAVVYGFMPASATIFNKKCR-PI--LELGS  236 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v--~wspdg-~~~av~~g~~~~~v~l~d~~~~-~~--~~~~~  236 (434)
                      .|.+.+       ||.+  ........ ...+.++|.++  +|+|+| ..|+  +++.|++|+|||++.. .+  ...+.
T Consensus       285 ~DgtV~-------lWD~--~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la--S~S~D~tvklWD~~~~~~~~~~~~~~  353 (524)
T 2j04_B          285 KNGFVA-------EFDL--TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS--TVAVDGYFYIFNPKDIATTKTTVSRF  353 (524)
T ss_dssp             TTSEEE-------EEET--TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE--EEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred             CCCEEE-------EEEC--CCCCCceEEeecccccEEEEEEEcCCCCCeEEE--EeccCCeEEEEECCCCCccccccccc
Confidence            444443       3333  22111111 12357899999  678888 6777  6888999999999642 22  22222


Q ss_pred             --cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          237 --GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 --~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                        ..+.+++|||+|+.+++++   .+++|++||++++.++..+.+|  .+..++|||+|++|++|+.      |+.|+||
T Consensus       354 ~~~~v~~v~fsp~~~~l~s~~---~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~------Dgtv~lw  424 (524)
T 2j04_B          354 RGSNLVPVVYCPQIYSYIYSD---GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSA------DGSLIIT  424 (524)
T ss_dssp             SCCSCCCEEEETTTTEEEEEC---SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEET------TTEEECC
T ss_pred             ccCcccceEeCCCcCeEEEeC---CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEEC------CCEEEEE
Confidence              3578999999999999888   4469999999988766666555  5677999999999999999      9999999


Q ss_pred             eecCceeeeee-c------ccceeeEEEcCCC
Q 013871          313 HHNGSLFFKKM-F------DKLFQAEWKPVSP  337 (434)
Q Consensus       313 ~~~g~~~~~~~-~------~~~~~~~w~p~~~  337 (434)
                      +..++++.... .      ..++.++|+|++.
T Consensus       425 d~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          425 NAARRLLHGIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             BSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred             echHhhccccccCccceeeeEEEEeccCCCCC
Confidence            99877554311 1      1467889998875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6.8e-23  Score=216.81  Aligned_cols=236  Identities=14%  Similarity=0.198  Sum_probs=166.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeecCC--CcEEEEec-CCeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFSSD--EAVACRMA-TNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~~-~~~i~v~~   76 (434)
                      |++++|||+|++|++++     .|+.|+|||+.  +++.+..+..+   ...+.+++|+++  +++|++++ |+.|++|+
T Consensus        12 V~~l~~s~dg~~latg~-----~dg~I~vwd~~~~~~~~~~~l~~h---~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCS-----SDKTIKIFEVEGETHKLIDTLTGH---EGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             EEEECCCSSSCCEEEEE-----TTTEEEEEEEETTEEEEEEEECCC---SSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             eEEEEECCCCCeEEEEE-----CCCcEEEEecCCCCCccceeccCC---cCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            78999999999999999     89999999998  44566666554   367779999988  89998884 68999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CC
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--ST  154 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~  154 (434)
                      +.......                                                 +.....+...+.++.|+|+  |.
T Consensus        84 ~~~~~~~~-------------------------------------------------~~~~~~h~~~V~~v~~sp~~~~~  114 (753)
T 3jro_A           84 EENGRWSQ-------------------------------------------------IAVHAVHSASVNSVQWAPHEYGP  114 (753)
T ss_dssp             EETTEEEE-------------------------------------------------EEEECCCSSCEEEEEECCGGGCS
T ss_pred             CCCCcccc-------------------------------------------------cccccCCCCCeEEEEECCCCCCC
Confidence            76521000                                                 0001112234556777777  66


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-------------CCCEEEEEEccCCCeE
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-------------SGSEFAVVYGFMPASA  221 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-------------dg~~~av~~g~~~~~v  221 (434)
                      .+++..   .|...+       +|.+.............+.+.|.+++|+|             ++..|+  +|..++.|
T Consensus       115 ~l~sgs---~dg~I~-------vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~--sgs~dg~I  182 (753)
T 3jro_A          115 LLLVAS---SDGKVS-------VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFV--TGGADNLV  182 (753)
T ss_dssp             EEEEEE---TTSEEE-------EEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEE--EEETTSCE
T ss_pred             EEEEEe---CCCcEE-------EEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEE--EEECCCeE
Confidence            654431   222222       33332221111222233578999999999             577777  57789999


Q ss_pred             EEEecccc-----eeEEe--CCcCeeEEEECCC---CCeEEEEecCCCCCeEEEEEccCCE-----EEEEeeCC--CceE
Q 013871          222 TIFNKKCR-----PILEL--GSGPYNTVRWNPK---GKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRAE--CSVT  284 (434)
Q Consensus       222 ~l~d~~~~-----~~~~~--~~~~~~~i~~SP~---g~~l~~~~~~~~~g~i~iwd~~~~~-----~i~~~~~~--~~~~  284 (434)
                      ++||++..     .+..+  |...+++++|+|+   |++|++++   .+|.|++||+.+++     .+.....+  .+..
T Consensus       183 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~  259 (753)
T 3jro_A          183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS---QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR  259 (753)
T ss_dssp             EEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE---SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred             EEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe---cCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence            99998642     22333  7889999999999   89999998   56799999998763     22222222  5567


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      ++|+|+|++|++++.      |+.|+||++.
T Consensus       260 l~~spdg~~l~s~s~------Dg~I~vwd~~  284 (753)
T 3jro_A          260 ASWSLSGNVLALSGG------DNKVTLWKEN  284 (753)
T ss_dssp             EEECTTTCCEEEECS------SSCEECCBCC
T ss_pred             EEEcCCCCEEEEEcC------CCEEEEEecC
Confidence            999999999999999      9999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=7.4e-22  Score=187.82  Aligned_cols=257  Identities=10%  Similarity=0.006  Sum_probs=187.2

Q ss_pred             CCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCC---ceeeeeecCCeeEEEEeCCCCC-eEEEEecCCCCCCceEEE
Q 013871           48 TKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPK---GILYRLRVPGVAAFEVSKAPGS-HVAVFVPESKGSPASVQI  122 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~---~~~~~~~~~~v~~~~~sp~~~~-~ia~~~~~~~~~~~~v~i  122 (434)
                      |...+.+++|+||+++|+++ .++.|++|++.....   ......+...|.+++|+|+ +. .+++-     +.++.|++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~-----~~dg~i~~   83 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVG-----TVQGEILK   83 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEE-----ETTSCEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEE-----cCCCeEEE
Confidence            45778899999999999887 468999999877551   1223345668999999998 45 55542     34578999


Q ss_pred             EEc-CCCCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--c------ceeeee
Q 013871          123 YAC-GKDLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T------HEGLVP  191 (434)
Q Consensus       123 ~~~-~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~------~~~~v~  191 (434)
                      |++ ..   . .......  +...+..+.|+| +..++...   .|...         ..+++..  .      ......
T Consensus        84 wd~~~~---~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i---------~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           84 VDLIGS---P-SFQALTNNEANLGICRICKYG-DDKLIAAS---WDGLI---------EVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             ECSSSS---S-SEEECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEE---------EEECHHHHTTBCEEEEESCSSS
T ss_pred             EEeccC---C-ceEeccccCCCCceEEEEeCC-CCEEEEEc---CCCeE---------EEEcccccccccccccCCeeeE
Confidence            999 76   3 3355566  788889999999 87765432   33333         2332221  0      122223


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-c--ee--EE-eCCcCeeEEEECC-CCCeEEEEecCCCCCeEE
Q 013871          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R--PI--LE-LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~--~~--~~-~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~  264 (434)
                      +.+.+.|.+++|+|++  ++  ++..++.|.+||++. .  ..  .. .+...+.+++|+| +|++|++++   .+|.|.
T Consensus       147 ~~~~~~v~~~~~~~~~--l~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~---~dg~i~  219 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR--LI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVA  219 (342)
T ss_dssp             SSSCCCEEEEEECSSE--EE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEE
T ss_pred             EeeCCceEEEEecCCc--EE--EEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe---cCCcEE
Confidence            4467899999999987  44  477789999999976 2  11  22 2577899999999 999999998   567999


Q ss_pred             EEEccCC------EEEEEeeCC-----------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--e-
Q 013871          265 FWDYVDG------KQLGTTRAE-----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--M-  323 (434)
Q Consensus       265 iwd~~~~------~~i~~~~~~-----------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~-  323 (434)
                      +||++..      +.+..+..+           .+..++|+|+|++|++++.      |+.|+|||+. ++++...  + 
T Consensus       220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~h  293 (342)
T 1yfq_A          220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCS
T ss_pred             EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC------CceEEEEcCccHhHhhhhhccc
Confidence            9999876      556666655           5667999999999999999      9999999996 5555543  3 


Q ss_pred             cccceeeEEEcCCCCCCCC
Q 013871          324 FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       324 ~~~~~~~~w~p~~~~~~~~  342 (434)
                      ...+..+.  |++..++..
T Consensus       294 ~~~v~~~~--~~~~~l~s~  310 (342)
T 1yfq_A          294 EDSVVKIA--CSDNILCLA  310 (342)
T ss_dssp             SSEEEEEE--ECSSEEEEE
T ss_pred             CCCceEec--CCCCeEEEE
Confidence            45677777  887776665

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.90  E-value=1.4e-21  Score=189.65  Aligned_cols=291  Identities=10%  Similarity=0.029  Sum_probs=180.3

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFPK   82 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~~   82 (434)
                      ..+|||||++|++.+...  ...+|.+||+.+|+.........   .....+.|||||+.|++... ..|.+|++.....
T Consensus        40 ~~~~SpDg~~l~~~~~~~--g~~~l~~~d~~~g~~~~lt~~~~---~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~  114 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFD--GPWNYYLLDLNTQVATQLTEGRG---DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE  114 (388)
T ss_dssp             SCCBCTTSCEEEEEECTT--SSCEEEEEETTTCEEEECCCSSC---BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred             CccCCCCCCEEEEEEcCC--CCceEEEEeCCCCceEEeeeCCC---CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence            478999999999988311  12369999999887655443322   23325789999999998864 5999999987543


Q ss_pred             ceeeeeecCCeeE--EEEeCCCCCeEEEE-ecCC----------------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           83 GILYRLRVPGVAA--FEVSKAPGSHVAVF-VPES----------------KGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        83 ~~~~~~~~~~v~~--~~~sp~~~~~ia~~-~~~~----------------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      ......+...+..  +.++|++ ..++.. ....                .+....|.+|++.+   ++ ..........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~---g~-~~~l~~~~~~  189 (388)
T 3pe7_A          115 NVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT---GE-STVILQENQW  189 (388)
T ss_dssp             EEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT---CC-EEEEEEESSC
T ss_pred             eeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCC---Cc-eEEeecCCcc
Confidence            2222333332332  3347874 444332 2111                12346788888876   33 3344444455


Q ss_pred             eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC-CCeEEEEECcCCCEEEEEEccCCC--
Q 013871          144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFMPA--  219 (434)
Q Consensus       144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~-~~i~~v~wspdg~~~av~~g~~~~--  219 (434)
                      ...+.|+| +|+.|++......+.      +...|+.++..+.....+.-... ..+..++|||||+.+++++.....  
T Consensus       190 ~~~~~~sp~dg~~l~~~~~~~~~~------~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (388)
T 3pe7_A          190 LGHPIYRPYDDSTVAFCHEGPHDL------VDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD  263 (388)
T ss_dssp             EEEEEEETTEEEEEEEEECSCTTT------SSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred             ccccEECCCCCCEEEEEEecCCCC------CcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence            67899999 999988765321110      12357888776653333322212 257789999999998875443222  


Q ss_pred             -eEEEEecccceeEE---eCC-----cCeeEEEECCCCCeEEEEecC------CCCCeEEEEEccCCEEEEEeeCCC---
Q 013871          220 -SATIFNKKCRPILE---LGS-----GPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGKQLGTTRAEC---  281 (434)
Q Consensus       220 -~v~l~d~~~~~~~~---~~~-----~~~~~i~~SP~g~~l~~~~~~------~~~g~i~iwd~~~~~~i~~~~~~~---  281 (434)
                       .|.+||+.+.....   +..     .....+.|||||+.|++...+      ..+..|++||+.+++......+..   
T Consensus       264 ~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~  343 (388)
T 3pe7_A          264 RFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWK  343 (388)
T ss_dssp             EEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCC
T ss_pred             ceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccc
Confidence             39999997554332   221     012234799999988865321      235689999999887654444333   


Q ss_pred             ---------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          282 ---------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       282 ---------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                               ...++|||||++|+.++..     ++...||.++
T Consensus       344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~-----~g~~~l~~~~  381 (388)
T 3pe7_A          344 VFEGDRQVTHPHPSFTPDDKQILFTSDV-----HGKPALYLAT  381 (388)
T ss_dssp             CBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEEE
T ss_pred             ccccccccCCCCccCCCCCCEEEEEecC-----CCceeEEEEE
Confidence                     4568999999999988864     6667777653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=7.2e-21  Score=199.66  Aligned_cols=291  Identities=13%  Similarity=0.113  Sum_probs=186.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC--
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD--   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~--   79 (434)
                      |.+++|||| ++|+...      ++.|++||+.+++....... .   ..+..++|||||++|++..++.|.+|++..  
T Consensus        84 v~~~~~spd-~~~~~~~------~~~i~~~d~~~~~~~~l~~~-~---~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~  152 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFT------QGGLVGFDMLARKVTYLFDT-N---EETASLDFSPVGDRVAYVRNHNLYIARGGKLG  152 (706)
T ss_dssp             CEEEEETTT-TEEEEEE------TTEEEEEETTTTEEEEEECC-T---TCCTTCEECTTSSEEEEEETTEEEEEECBCTT
T ss_pred             ceeEEECCC-CeEEEEE------CCEEEEEECCCCceEEccCC-c---ccccCCcCCCCCCEEEEEECCeEEEEecCccc
Confidence            678999999 6665544      48999999998876443322 2   445588999999999999889999999876  


Q ss_pred             ---CCCceeeeeecCC--------------eeEEEEeCCCCCeEEEEecC----------------------------CC
Q 013871           80 ---FPKGILYRLRVPG--------------VAAFEVSKAPGSHVAVFVPE----------------------------SK  114 (434)
Q Consensus        80 ---~~~~~~~~~~~~~--------------v~~~~~sp~~~~~ia~~~~~----------------------------~~  114 (434)
                         .............              +..+.|||+ +..|++..-+                            ..
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~  231 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP  231 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence               4332211222222              478999999 5556554311                            11


Q ss_pred             CCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc-ceeeee
Q 013871          115 GSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP  191 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~  191 (434)
                      .....|.+|++.+   +.......  .+......+.|+|||+.|++....   ...    ....++.++..+. ....+.
T Consensus       232 ~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~---~~~----~~~~v~~~d~~~g~~~~~~~  301 (706)
T 2z3z_A          232 SHHVTVGIYHLAT---GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVN---RAQ----NECKVNAYDAETGRFVRTLF  301 (706)
T ss_dssp             CCEEEEEEEETTT---TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEEC---TTS----CEEEEEEEETTTCCEEEEEE
T ss_pred             CCeeEEEEEECCC---CceEeeccCCCCceeEeeEEEECCCCEEEEEEeC---CCC----CeeEEEEEECCCCceeeEEE
Confidence            2346789999876   33222111  233456789999999988765322   111    1224667766554 222221


Q ss_pred             c-CCC---CCeEEEEECc--CCCEEEEEEccCCCeEEEEe--cccceeEEe--CCcCeeE-EEECCCCCeEEEEecCCC-
Q 013871          192 L-RKE---GPVHDVQWSY--SGSEFAVVYGFMPASATIFN--KKCRPILEL--GSGPYNT-VRWNPKGKFLCLAGFGNL-  259 (434)
Q Consensus       192 l-~~~---~~i~~v~wsp--dg~~~av~~g~~~~~v~l~d--~~~~~~~~~--~~~~~~~-i~~SP~g~~l~~~~~~~~-  259 (434)
                      . ...   ..+.+++|+|  ||+.++  ++..++.+.||+  ..+..+..+  +...+.. +.|||+|+.|++++.++. 
T Consensus       302 ~~~~~~~~~~~~~~~~sp~~dg~~l~--~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~  379 (706)
T 2z3z_A          302 VETDKHYVEPLHPLTFLPGSNNQFIW--QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP  379 (706)
T ss_dssp             EEECSSCCCCCSCCEECTTCSSEEEE--EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred             EccCCCeECccCCceeecCCCCEEEE--EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence            1 111   2346789999  998655  355566666664  456656655  3445665 799999998888775432 


Q ss_pred             -CCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          260 -PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       260 -~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                       ...|+.||..+++.........+..++|||||++|+++...+.  ..+.|++|+..+..
T Consensus       380 ~~~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          380 LERHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIGKGS  437 (706)
T ss_dssp             TCBEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESSSCE
T ss_pred             ceEEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECCCCe
Confidence             2378888887775333223335667999999999998866321  12569999987654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=8.6e-21  Score=188.83  Aligned_cols=255  Identities=11%  Similarity=0.108  Sum_probs=183.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeec--CCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFS--SDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S--~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|+|++ +|++++     .|+.|+|||+.+++++..+..+.   ..+.+++|+  +++.++++++ ++.|++|++.
T Consensus       165 V~~l~~~~~~-~l~s~s-----~dg~i~vwd~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~  235 (464)
T 3v7d_B          165 VWALKYAHGG-ILVSGS-----TDRTVRVWDIKKGCCTHVFEGHN---STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP  235 (464)
T ss_dssp             EEEEEECSTT-EEEEEE-----TTSCEEEEETTTTEEEEEECCCS---SCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred             EEEEEEcCCC-EEEEEe-----CCCCEEEEECCCCcEEEEECCCC---CccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence            7899999998 899998     89999999999999988887543   667788888  5888888884 6899999987


Q ss_pred             CCCCce-----------------------eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871           79 DFPKGI-----------------------LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        79 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      ......                       ....+...+..+  +++ +..+++     ++.++.|++|++.+   .+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~~-----~~~d~~i~vwd~~~---~~~~~  304 (464)
T 3v7d_B          236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLY  304 (464)
T ss_dssp             CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-TTEEEE-----EETTSCEEEEETTT---TEEEE
T ss_pred             CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-CCEEEE-----EeCCCeEEEEECCC---CcEEE
Confidence            643211                       111122234443  454 334443     24567899999987   77888


Q ss_pred             eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 013871          136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~  214 (434)
                      ....+...+..+.|+|+|..++...   .|...+         .++.... .....+ .+...|.+++|+  ++.++  +
T Consensus       305 ~~~~~~~~v~~~~~~~~~~~l~sg~---~dg~i~---------vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~--s  367 (464)
T 3v7d_B          305 ILSGHTDRIYSTIYDHERKRCISAS---MDTTIR---------IWDLENG-ELMYTLQGHTALVGLLRLS--DKFLV--S  367 (464)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEE---TTSCEE---------EEETTTT-EEEEEECCCSSCEEEEEEC--SSEEE--E
T ss_pred             EecCCCCCEEEEEEcCCCCEEEEEe---CCCcEE---------EEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEE--E
Confidence            8888888999999999999865432   344333         3333333 222222 357899999998  45666  5


Q ss_pred             ccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECC
Q 013871          215 GFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSP  289 (434)
Q Consensus       215 g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wsp  289 (434)
                      +..|+.|++||++. .....+ +...+..++|+|+|++|++++ +   |.|++||+++++.+.. ...+  .+..++|+ 
T Consensus       368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d---g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-  442 (464)
T 3v7d_B          368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E---NQFNIYNLRSGKLVHANILKDADQIWSVNFK-  442 (464)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T---TEEEEEETTTCCEEESCTTTTCSEEEEEEEE-
T ss_pred             EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C---CeEEEEECCCCcEEehhhccCCCcEEEEEec-
Confidence            77899999999964 344444 566778899999999999886 3   6999999999998876 3333  45558886 


Q ss_pred             CCCEEEEEEc
Q 013871          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                       ++.+++++.
T Consensus       443 -~~~l~~~~~  451 (464)
T 3v7d_B          443 -GKTLVAAVE  451 (464)
T ss_dssp             -TTEEEEEEE
T ss_pred             -CCEEEEEEE
Confidence             566666665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.7e-23  Score=205.11  Aligned_cols=246  Identities=9%  Similarity=0.014  Sum_probs=175.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |++++|||||++|++.+     .|++|+|||..+  ++..+. +..  ....+.+++|||||++||+++ |++|+||++.
T Consensus        88 V~~vawSPdG~~LAs~s-----~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           88 PRVCKPSPIDDWMAVLS-----NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             EEEEEECSSSSCEEEEE-----TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEe-----CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            78999999999999999     899999999544  555554 321  023577999999999999996 6899999998


Q ss_pred             CCCC-------ceeee----eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccceeE
Q 013871           79 DFPK-------GILYR----LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCSTVQ  146 (434)
Q Consensus        79 ~~~~-------~~~~~----~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~~~  146 (434)
                      ....       ....+    .|...|.+++|||++   ++..     +.+..|++|++............ ..+...+..
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laas-----s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s  231 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAA-----LSNNSVFSMTVSASSHQPVSRMIQNASRRKITD  231 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEE-----ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEE-----eCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence            7432       11221    123579999999985   3332     34679999999762100122333 467778889


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE--CcCCCEEEEEEccCCCeEEEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW--SYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w--spdg~~~av~~g~~~~~v~l~  224 (434)
                      +.|+  |+.|+..    .++         .+++++..+.........+...|.+++|  +||+..++  .++.+++ ++|
T Consensus       232 vaFs--g~~LASa----~~~---------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La--~a~edG~-klw  293 (588)
T 2j04_A          232 LKIV--DYKVVLT----CPG---------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILL--MSNKTSY-KVL  293 (588)
T ss_dssp             EEEE--TTEEEEE----CSS---------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEE--ECSSCEE-EEE
T ss_pred             EEEE--CCEEEEE----eCC---------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEE--EEcCCCC-EEE
Confidence            9999  6665543    122         3555555565444555567889999999  99997777  4788888 888


Q ss_pred             ecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC
Q 013871          225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       225 d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~  300 (434)
                      ...             .+.++||+..++.+     ++++++|+..... +..+++. .+..++|||||+.+|+++.-
T Consensus       294 ~~d-------------~~~~spd~~l~a~~-----d~~v~lW~~~g~~-l~~~~~~~~I~~va~SPdG~~lA~~~~i  351 (588)
T 2j04_A          294 LED-------------ELHVTADNIIAPYL-----EKKFKKWSTIWNE-FNNYETTLVIHGISLSPDGYSIAIVYDM  351 (588)
T ss_dssp             ESS-------------SEEEECCCSSHHHH-----HHHHHHTTTTTTS-SSSSCCEEEEEEEEECTTSSEEEEEEEE
T ss_pred             eec-------------cEEECCCceEEEEc-----CCEEEEEECCCCc-eeeeccceEEEEEEECCCCCEEEEEEec
Confidence            766             26699999988764     3699999876443 3234332 34459999999999999873

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=7.7e-21  Score=176.06  Aligned_cols=256  Identities=11%  Similarity=0.043  Sum_probs=171.2

Q ss_pred             CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC-CCCceeeeee-cCCeeEEEEeC
Q 013871           23 PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD-FPKGILYRLR-VPGVAAFEVSK  100 (434)
Q Consensus        23 ~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~-~~~~~~~~~~-~~~v~~~~~sp  100 (434)
                      ..|+.|++||+.+++....+.+ .   ..+.+++||||+++|+++.++.|.+|++.. .........+ ...+..+.|+|
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~-~---~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQT-P---ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEE-S---SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CcceeEEEEeCCCCceeeeccC-C---cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            3678999999999886644433 2   566699999999999999999999999987 5432222222 24578899999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      + +..+++.... ......|.++++..   + ........ .....+.|+|+|+.|++....+         +...||.+
T Consensus        95 d-g~~l~~~~~~-~~~~~~l~~~~~~~---~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~---------~~~~l~~~  158 (297)
T 2ojh_A           95 D-GALYAISDKV-EFGKSAIYLLPSTG---G-TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRD---------QVFDIYSM  158 (297)
T ss_dssp             T-SSEEEEEECT-TTSSCEEEEEETTC---C-CCEECCSS-SSEEEEEECTTSSEEEEEEEET---------TEEEEEEE
T ss_pred             C-CCEEEEEEeC-CCCcceEEEEECCC---C-ceEEeecC-CCccceEECCCCCEEEEEECCC---------CceEEEEE
Confidence            9 4555544321 11223444444433   2 23333222 2367789999999987654432         22357777


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec--ccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~--~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      +..+... .........+.+++|+|+|+.+++. +..++.+.+|++  .+..+..+  +...+..+.|+|+|++|++++.
T Consensus       159 ~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          159 DIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             ETTTCCE-EECCCSSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred             ECCCCcc-eEcccCCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence            6655432 2222345789999999999998874 334566777765  45555555  4566788999999999988875


Q ss_pred             CC--------CCCeEEEEEccCCEE--EEEeeCC--CceEEEECCCCCEEEEEEcC
Q 013871          257 GN--------LPGDMAFWDYVDGKQ--LGTTRAE--CSVTSEWSPDGRYFMTATTA  300 (434)
Q Consensus       257 ~~--------~~g~i~iwd~~~~~~--i~~~~~~--~~~~~~wspdg~~l~tas~~  300 (434)
                      +.        ..+.|++||+.+++.  +..+..+  .+..++|+|||++|++++..
T Consensus       237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            42        125799999988743  4443332  55669999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=3.6e-21  Score=187.15  Aligned_cols=273  Identities=13%  Similarity=0.105  Sum_probs=163.0

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEe-cCCeEEEEe
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRM-ATNEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~-~~~~i~v~~   76 (434)
                      |.+++|+| ++++|++++     .|+.|+|||+.+++.+..+...    ..+.++.|+++   +.+++++ .++.|++||
T Consensus       102 v~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFNFE----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             EEEEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEECS----SCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             EEEEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceeccCC----CceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            78999999 788999998     8999999999999988877643    44558888884   4478777 567999999


Q ss_pred             CCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee---------------eecc
Q 013871           77 TTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR---------------SFFR  141 (434)
Q Consensus        77 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~---------------~~~~  141 (434)
                      +...........+...|.+++|+|++...+++     .+.++.|++|++...  ...+...               ..+.
T Consensus       173 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (408)
T 4a11_B          173 LKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLWDVRRA--SGCLITLDQHNGKKSQAVESANTAHN  245 (408)
T ss_dssp             SSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEEETTCS--SCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred             CCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEEECCCC--Ccccccccccccccceeecccccccc
Confidence            98766544455566789999999996555554     245678999999763  1222222               4566


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEc
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g  215 (434)
                      ..+..+.|+|+|+.|+...   .|..         +..+++...........      .......+... .+..+++  +
T Consensus       246 ~~v~~~~~~~~~~~l~~~~---~dg~---------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~  310 (408)
T 4a11_B          246 GKVNGLCFTSDGLHLLTVG---TDNR---------MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG-CSSEFVF--V  310 (408)
T ss_dssp             SCEEEEEECTTSSEEEEEE---TTSC---------EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCS-SSSCEEE--E
T ss_pred             CceeEEEEcCCCCEEEEec---CCCe---------EEEEECCCCccceeccccccccccccceeEEecC-CCceEEE--E
Confidence            7788999999999876542   3333         33333332211111000      01111222222 3344443  3


Q ss_pred             cCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCC
Q 013871          216 FMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGR  292 (434)
Q Consensus       216 ~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~  292 (434)
                      ..++.+.+||+. ...+..+  |...+++++|+|+|++|++++   .+|.|++||+++++.+........ ...++|...
T Consensus       311 ~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~  386 (408)
T 4a11_B          311 PYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS---RDCNILAWVPSLYEPVPDDDETTT-KSQLNPAFE  386 (408)
T ss_dssp             EETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE---TTSCEEEEEECC----------------------
T ss_pred             ecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC---CCCeEEEEeCCCCCccCCCCceEe-ccccccccc
Confidence            457899999986 4555555  678999999999999999999   567999999999987765544322 234444333


Q ss_pred             E-EEEEEcCCceeeCCcEEEEeec
Q 013871          293 Y-FMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       293 ~-l~tas~~prl~~D~~i~iw~~~  315 (434)
                      . +.++..      |+.++||+..
T Consensus       387 ~~~~~~~~------~~~~~~W~~~  404 (408)
T 4a11_B          387 DAWSSSDE------EGGTSAWSHP  404 (408)
T ss_dssp             ------------------------
T ss_pred             eeecccCc------cCceeecCCc
Confidence            3 334444      8999999853

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=4.2e-21  Score=201.82  Aligned_cols=287  Identities=10%  Similarity=0.037  Sum_probs=182.0

Q ss_pred             cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.+++|||||++|++......    ..++.|.|||+.+++. ..+.....+...+..++|||||++||++.+++|++|+.
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEEC
Confidence            678999999999999874322    1247899999999876 44433322223356899999999999999899999998


Q ss_pred             CCCCCceeeeeecCC------------------eeEEEEeCCCCCeEEEEecCC--------------------------
Q 013871           78 TDFPKGILYRLRVPG------------------VAAFEVSKAPGSHVAVFVPES--------------------------  113 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~------------------v~~~~~sp~~~~~ia~~~~~~--------------------------  113 (434)
                      ...............                  +..+.|||+ +..|++...+.                          
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            774432221221222                  378999999 55665543221                          


Q ss_pred             ---CCCCceEEEEEcCCCCCCCceeeeeec------ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC
Q 013871          114 ---KGSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG  184 (434)
Q Consensus       114 ---~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~  184 (434)
                         ......|.+|++.+   +.........      ......+.|+|||+.|++.....   .     ....|+.+++.+
T Consensus       221 ~G~~~~~~~l~~~d~~~---~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~-----~~~~i~~~d~~~  289 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNG---PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA---Q-----NVSILTLCDATT  289 (723)
T ss_dssp             TTSCCCEEEEEEEESSS---SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---S-----CEEEEEEEETTT
T ss_pred             CCCCCCeeEEEEEECCC---CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC---C-----CeEEEEEEeCCC
Confidence               01123788999876   4433333322      34567899999999664432211   0     123467777655


Q ss_pred             cceeeee-cCCCCCe----EEEEECcCCCEEEEEEccCCC------eEEEEe-cccce---eEEeC--CcCeeE-EEECC
Q 013871          185 THEGLVP-LRKEGPV----HDVQWSYSGSEFAVVYGFMPA------SATIFN-KKCRP---ILELG--SGPYNT-VRWNP  246 (434)
Q Consensus       185 ~~~~~v~-l~~~~~i----~~v~wspdg~~~av~~g~~~~------~v~l~d-~~~~~---~~~~~--~~~~~~-i~~SP  246 (434)
                      .....+. ....+.+    ..++|||||+.|+++++..++      .+.+|| ..+..   ...+.  ...+.. ++|||
T Consensus       290 g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp  369 (723)
T 1xfd_A          290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE  369 (723)
T ss_dssp             CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred             CcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC
Confidence            4322221 1123333    378999999999886455555      677788 44444   44442  333444 69999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEccCC--EEEEEee-----CCCceEEEECCCCCEEEEEEcCC
Q 013871          247 KGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR-----AECSVTSEWSPDGRYFMTATTAP  301 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~-----~~~~~~~~wspdg~~l~tas~~p  301 (434)
                      ||+.|+..+.+...+.+.||+++..  .....+.     ...+..++|||||++|+.....+
T Consensus       370 dg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~  431 (723)
T 1xfd_A          370 KGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGP  431 (723)
T ss_dssp             TTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSS
T ss_pred             CCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCC
Confidence            9999987764422368889987532  2222232     22456799999999999877643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=5.6e-21  Score=194.30  Aligned_cols=302  Identities=13%  Similarity=0.116  Sum_probs=207.0

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeC--CCCCC
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDT--TDFPK   82 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~--~~~~~   82 (434)
                      .|||+|.++++.+     .|+.|.+||..+++++.++....   . +..++|||||++|+++. ++.|.+||+  .+.. 
T Consensus       144 ~~~p~~~~~vs~~-----~d~~V~v~D~~t~~~~~~i~~g~---~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-  213 (543)
T 1nir_A          144 DLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTGY---A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-  213 (543)
T ss_dssp             CCCGGGEEEEEEG-----GGTEEEEEETTTCCEEEEEECST---T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-
T ss_pred             ccCCCCEEEEEEc-----CCCeEEEEECCCceEEEEEecCc---c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-
Confidence            4899999888877     78999999999999998887432   2 44789999999998874 689999999  4432 


Q ss_pred             ceeeeee-cCCeeEEEEeC----CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec----------cc-ceeE
Q 013871           83 GILYRLR-VPGVAAFEVSK----APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF----------RC-STVQ  146 (434)
Q Consensus        83 ~~~~~~~-~~~v~~~~~sp----~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~----------~~-~~~~  146 (434)
                       ....+. ...+..++|||    + +.++.+..    ..++.|.+|+..+   .+++......          .. ....
T Consensus       214 -~~~~i~~g~~p~~va~sp~~~~d-g~~l~v~~----~~~~~v~v~D~~t---~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          214 -KVAEIKIGIEARSVESSKFKGYE-DRYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             -EEEEEECCSEEEEEEECCSTTCT-TTEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             -EEEEEecCCCcceEEeCCCcCCC-CCEEEEEE----ccCCeEEEEeccc---cccceeecccCcccCccccccCCceEE
Confidence             223333 34578999999    8 44443321    2356899999877   5666655432          12 4567


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      +.+++++..+++...    .       ...|+.++...... ....+.....+++++|+|||++|++ ++..+++|.+||
T Consensus       285 i~~s~~~~~~~vs~~----~-------~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~v-a~~~~~~v~v~D  352 (543)
T 1nir_A          285 IIASHEHPEFIVNVK----E-------TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMT-AANNSNKVAVID  352 (543)
T ss_dssp             EEECSSSSEEEEEET----T-------TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEE-EEGGGTEEEEEE
T ss_pred             EEECCCCCEEEEEEC----C-------CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEE-EecCCCeEEEEE
Confidence            899999988765421    1       11355555433211 1112233456889999999998876 455678999999


Q ss_pred             ccccee-EEeC------CcCeeEEEECCC-CCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEEC
Q 013871          226 KKCRPI-LELG------SGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWS  288 (434)
Q Consensus       226 ~~~~~~-~~~~------~~~~~~i~~SP~-g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~ws  288 (434)
                      ++...+ ..+.      .+.... .++|+ |.+++++..+  +++|.|||+.+       ++++.++..+  .+..+.++
T Consensus       353 ~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          353 SKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             TTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC
T ss_pred             CCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC
Confidence            975443 3332      111222 25787 5555555433  36999999998       8899999876  45569999


Q ss_pred             CCCCEEEEEEc-CCceeeCCcEEEEeec-Cceeeee-----------ecccceeeEEEcCCCCCCC
Q 013871          289 PDGRYFMTATT-APRLQIDNGIKIFHHN-GSLFFKK-----------MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       289 pdg~~l~tas~-~prl~~D~~i~iw~~~-g~~~~~~-----------~~~~~~~~~w~p~~~~~~~  341 (434)
                      |||++|++++. .|....+++|.|||.. ++..++.           .-..+.++.|+|++..++.
T Consensus       430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            99999999872 3332237899999995 5544332           1346889999999998884

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=1.1e-19  Score=173.45  Aligned_cols=272  Identities=11%  Similarity=0.005  Sum_probs=187.6

Q ss_pred             cceEEecCCCcEEEEEecCCC--CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSST--PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~--~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~   77 (434)
                      +..++|||+|++|++.+....  ..++.|.+||+.+++.+..+....    ....+.|++|+++++..  .++.|.+||.
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----KPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            457899999999988773211  125789999999999988887642    23478999999966554  3479999999


Q ss_pred             CCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE
Q 013871           78 TDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN  148 (434)
Q Consensus        78 ~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~  148 (434)
                      .+............         .+..+.|+|+++ .+.+...   +..+.|.+|++.+   .+.+............+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~---~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~  191 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGI---GKESVIWVVDGGN---IKLKTAIQNTGKMSTGLA  191 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEE---SSSCEEEEEETTT---TEEEEEECCCCTTCCCCE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEec---CCCceEEEEcCCC---CceEEEecCCCCccceEE
Confidence            87543222222111         267899999854 3333221   2356899999977   566655554455567889


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~---~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      |+|+|+.+++..   .+         ..++.++...... ..+...   ....+..++|+|+|+.+++. ...++.+.+|
T Consensus       192 ~s~dg~~l~~~~---~~---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~  258 (353)
T 3vgz_A          192 LDSEGKRLYTTN---AD---------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVV  258 (353)
T ss_dssp             EETTTTEEEEEC---TT---------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEE
T ss_pred             ECCCCCEEEEEc---CC---------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEE
Confidence            999999876642   11         1345555444322 222331   24457789999999988764 5556899999


Q ss_pred             eccc-ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871          225 NKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       225 d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                      |.+. ..+..+.......+.|+|+|+++++++.+  ++.|.+||..+++.+..+... .+..++|+|||++|+++..
T Consensus       259 d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          259 DTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             ETTTCCEEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEE
T ss_pred             ECCCCcEEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEc
Confidence            9964 44444433334679999999987777643  379999999999988887765 4556999999998888776

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.89  E-value=3.3e-20  Score=188.66  Aligned_cols=292  Identities=12%  Similarity=0.073  Sum_probs=193.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecC----CCcEEEEec--CCeEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSS----DEAVACRMA--TNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~----d~~~la~~~--~~~i~   73 (434)
                      +.+++|||||++|++.+     .|+.|.+||+  .+++++.++...    .....++|||    ||++++++.  +++|.
T Consensus       181 ~~~v~~spdg~~l~v~~-----~d~~V~v~D~~~~t~~~~~~i~~g----~~p~~va~sp~~~~dg~~l~v~~~~~~~v~  251 (543)
T 1nir_A          181 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIG----IEARSVESSKFKGYEDRYTIAGAYWPPQFA  251 (543)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECC----SEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             cceEEECCCCCEEEEEC-----CCCeEEEEECcCCCCcEEEEEecC----CCcceEEeCCCcCCCCCEEEEEEccCCeEE
Confidence            46789999999999998     6799999999  899988887653    3344899999    999998874  68999


Q ss_pred             EEeCCCCCCceeeee----------ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec
Q 013871           74 FFDTTDFPKGILYRL----------RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF  140 (434)
Q Consensus        74 v~~~~~~~~~~~~~~----------~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~  140 (434)
                      +||..+.........          +. ..+..+.+||++...++. .    ...+.|.+|++..   ...+.  ... .
T Consensus       252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs-~----~~~g~i~vvd~~~---~~~l~~~~i~-~  322 (543)
T 1nir_A          252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN-V----KETGKVLLVNYKD---IDNLTVTSIG-A  322 (543)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE-E----TTTTEEEEEECTT---SSSCEEEEEE-C
T ss_pred             EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE-E----CCCCeEEEEEecC---CCcceeEEec-c
Confidence            999877654322222          11 257889999985443332 1    3457899999976   33322  222 2


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC---CCCCeEEEEECcCCCEEEEEEcc
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      ......+.|+|+|+++++...  .+.         .+..++..... ...+...   +.+....+ ++|++..+.+....
T Consensus       323 ~~~~~~~~~spdg~~l~va~~--~~~---------~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~  390 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAAN--NSN---------KVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL  390 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEG--GGT---------EEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             CcCccCceECCCCCEEEEEec--CCC---------eEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC
Confidence            334557899999998865432  122         23444443331 1122221   22223333 47885555543233


Q ss_pred             CCCeEEEEeccc--------ceeEEe--CCcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCCEEE-EEe----
Q 013871          217 MPASATIFNKKC--------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDGKQL-GTT----  277 (434)
Q Consensus       217 ~~~~v~l~d~~~--------~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~----~g~i~iwd~~~~~~i-~~~----  277 (434)
                      .+++|.+||+..        +.+..+  +.+....+.+||+|++|.++...+.    ++.|.|||+++++.. ..+    
T Consensus       391 ~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~  470 (543)
T 1nir_A          391 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE  470 (543)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH
T ss_pred             CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh
Confidence            578999999854        445555  4566788999999999998863221    469999999988655 332    


Q ss_pred             -----e-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          278 -----R-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       278 -----~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                           . ...+..++|+|||++++++.-.- ..-|+.|.|||. +++++.....
T Consensus       471 ~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~-~~~~~~i~v~D~~t~~~~~~i~~  523 (543)
T 1nir_A          471 WADLGEGAKRVVQPEYNKRGDEVWFSVWNG-KNDSSALVVVDDKTLKLKAVVKD  523 (543)
T ss_dssp             HHCCCSSCCEEEEEEECSSSSEEEEEEECC-TTSCCEEEEEETTTTEEEEEECC
T ss_pred             hcccCCCCCceEeccCCCCCCEEEEEeecC-CCCCCeEEEEECCCceEEEeecC
Confidence                 1 23667799999999999874210 001799999998 4566555443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=6.1e-21  Score=201.24  Aligned_cols=291  Identities=10%  Similarity=0.046  Sum_probs=183.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      |.+++|||||++|++.+     . +.|++||+.++.  .+..+....   ..+..++|||||++|+++.+++|.+|++..
T Consensus       111 v~~~~~SpDg~~l~~~~-----~-~~i~~~d~~~~~~~~~~~l~~~~---~~~~~~~~SPDG~~la~~~~~~i~~~d~~~  181 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPL-----G-GELYLYDLKQEGKAAVRQLTHGE---GFATDAKLSPKGGFVSFIRGRNLWVIDLAS  181 (741)
T ss_dssp             SCCCEECTTSSEEEEEE-----T-TEEEEEESSSCSTTSCCBCCCSS---SCEEEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred             cceeEECCCCCEEEEEe-----C-CcEEEEECCCCCcceEEEcccCC---cccccccCCCCCCEEEEEeCCcEEEEecCC
Confidence            57899999999999988     2 889999999882  233443322   445589999999999999989999999876


Q ss_pred             CCCceeeeeecC----------------CeeEEEEeCCCCCeEEEEecCCC--------------------------CCC
Q 013871           80 FPKGILYRLRVP----------------GVAAFEVSKAPGSHVAVFVPESK--------------------------GSP  117 (434)
Q Consensus        80 ~~~~~~~~~~~~----------------~v~~~~~sp~~~~~ia~~~~~~~--------------------------~~~  117 (434)
                      ............                .+..+.|||++ ..|++...+..                          ...
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  260 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN  260 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence            322111111111                14779999994 55554432211                          111


Q ss_pred             c--eEEEEEcCC-CCCCCceeeee---ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871          118 A--SVQIYACGK-DLQSQPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       118 ~--~v~i~~~~~-~~~~~~i~~~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                      .  .|.+|++.+ .    ......   .+......+.| |||+.|++.......       ....|+.++..+.....+.
T Consensus       261 ~~~~l~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          261 VQVKLGVISPAEQA----QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ-------KKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             CEEEEEEECSSTTC----CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS-------SEEEEEEEETTTCCEEEEE
T ss_pred             CeeEEEEEECCCCC----ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC-------CeEEEEEEECCCCceEEEE
Confidence            2  566667654 2    222222   23455678999 999998876532111       1235777776654322222


Q ss_pred             cCC-CC---CeEEEEECcCCCEEEEEEccCCCeEEE--EecccceeEEe--CCcCeeEE-EECCCCCeEEEEecCCCCCe
Q 013871          192 LRK-EG---PVHDVQWSYSGSEFAVVYGFMPASATI--FNKKCRPILEL--GSGPYNTV-RWNPKGKFLCLAGFGNLPGD  262 (434)
Q Consensus       192 l~~-~~---~i~~v~wspdg~~~av~~g~~~~~v~l--~d~~~~~~~~~--~~~~~~~i-~~SP~g~~l~~~~~~~~~g~  262 (434)
                      -.. .+   .+.+++|+|||+.++  ++..++.+.|  +|..+. ...+  +...+..+ .|||+|+.|++.+.++..+.
T Consensus       329 ~~~~~~~~~~~~~~~~spdg~~~~--~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~  405 (741)
T 2ecf_A          329 HETSPTWVPLHNSLRFLDDGSILW--SSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARE  405 (741)
T ss_dssp             EEECSSCCCCCSCCEECTTSCEEE--EECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTC
T ss_pred             EcCCCCcCCcCCceEECCCCeEEE--EecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCce
Confidence            111 12   456899999999444  3455665555  455555 5555  45566676 59999998877664433338


Q ss_pred             EEEEEccC-CEEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          263 MAFWDYVD-GKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       263 i~iwd~~~-~~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      +.||++.. +..+..+.. ..+..++|||||++|+.....+..  -..+.+|+..|+.+
T Consensus       406 ~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~--p~~~~l~~~~~~~~  462 (741)
T 2ecf_A          406 SQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNST--PPQIELFRANGEKI  462 (741)
T ss_dssp             BEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTE--EEEEEEEETTSCEE
T ss_pred             EEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCC--CCeEEEEEcCCCeE
Confidence            88998763 443344433 355569999999999988763221  24688888877643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.88  E-value=1.5e-20  Score=176.25  Aligned_cols=227  Identities=15%  Similarity=0.219  Sum_probs=164.1

Q ss_pred             eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEeccc
Q 013871           88 LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDVD  165 (434)
Q Consensus        88 ~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~d  165 (434)
                      .|...|.+++|+|+ +..++.     ++.++.|+||++.... ...+..+..|...+..+.|+++  |+.|+.   ...|
T Consensus         7 ~h~~~V~~~~~s~~-g~~las-----~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s---~s~D   76 (297)
T 2pm7_B            7 AHNEMIHDAVMDYY-GKRMAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILAS---CSYD   76 (297)
T ss_dssp             SCSSCEEEEEECTT-SSEEEE-----EETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEE---EETT
T ss_pred             CCcCceEEEEECCC-CCEEEE-----EeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCCEEEE---EcCC
Confidence            45567999999999 556654     3566899999997521 3567778889999999999864  776433   2345


Q ss_pred             ccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc-----eeEEeCCc
Q 013871          166 KTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR-----PILELGSG  237 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~-----~~~~~~~~  237 (434)
                      .+.+.       |.+.. +.......+ .+...|.+++|+|+  |..|+  ++..|+.|++||++..     ....-|..
T Consensus        77 ~~v~i-------Wd~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~--s~s~d~~v~~wd~~~~~~~~~~~~~~h~~  146 (297)
T 2pm7_B           77 GKVMI-------WKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLL--VASSDGKVSVVEFKENGTTSPIIIDAHAI  146 (297)
T ss_dssp             TEEEE-------EEBSS-SCBCCCEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred             CEEEE-------EEcCC-CceEEEEEeecCCCceeEEEeCcCCCCcEEE--EEECCCcEEEEEecCCCceeeeeeecccC
Confidence            55543       33321 111111222 25789999999998  77777  5778999999998643     12234788


Q ss_pred             CeeEEEECCC-------------CCeEEEEecCCCCCeEEEEEccCCE----EEEEeeCC--CceEEEECCCC---CEEE
Q 013871          238 PYNTVRWNPK-------------GKFLCLAGFGNLPGDMAFWDYVDGK----QLGTTRAE--CSVTSEWSPDG---RYFM  295 (434)
Q Consensus       238 ~~~~i~~SP~-------------g~~l~~~~~~~~~g~i~iwd~~~~~----~i~~~~~~--~~~~~~wspdg---~~l~  295 (434)
                      .+++++|+|+             +++|++++   .+|.|+|||+++++    .+..+.+|  .+..++|+|++   .+|+
T Consensus       147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la  223 (297)
T 2pm7_B          147 GVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA  223 (297)
T ss_dssp             CEEEEEECCCC------------CCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred             ccceEeecCCcccccccCCCCCCcceEEEEc---CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence            9999999997             57999998   56799999998764    56677766  56679999995   8999


Q ss_pred             EEEcCCceeeCCcEEEEeecCc------eee--eeecccceeeEEEcCCCCCCCCc
Q 013871          296 TATTAPRLQIDNGIKIFHHNGS------LFF--KKMFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~~~g~------~~~--~~~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++.      |+.|+||++...      .+.  ..+...++.++|+|++..|....
T Consensus       224 s~s~------D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          224 SVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEC------CCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence            9999      999999999652      111  12345689999999998877653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.88  E-value=3.5e-20  Score=173.82  Aligned_cols=258  Identities=15%  Similarity=0.122  Sum_probs=157.6

Q ss_pred             CCcEEEEEcCCC---cEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cC---CeEEEEeCCCC----CCceeeeeecCC
Q 013871           25 EKNVILWKTETG---EAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--AT---NEIQFFDTTDF----PKGILYRLRVPG   92 (434)
Q Consensus        25 d~~v~iWd~~~g---~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~---~~i~v~~~~~~----~~~~~~~~~~~~   92 (434)
                      +..|++|++.++   ++++++..+.   ..|..+.|+||..-|++.  ++   +.|+..-....    ........+...
T Consensus        62 ~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~  138 (356)
T 2w18_A           62 EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKA  138 (356)
T ss_dssp             SSEEEEEEESSSSBEEEEEEEECCS---SCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEE
T ss_pred             cceEEEcccCCCccceeeEEEeccC---ceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEE
Confidence            578999999999   8899987764   456688889977544333  22   12222211111    100011111111


Q ss_pred             eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC---CCCeEEEEEEecccccCc
Q 013871           93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR---GSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~---~G~~l~~~~~~~~d~~~~  169 (434)
                      |.+  + ++ +..+...   ..+..+.|++|++...  ++.+.....+...+..+.|++   +|..|   ++...|++.+
T Consensus       139 v~~--l-~~-g~lv~ss---~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~l~fs~~~g~~~~L---aSgS~D~TIk  206 (356)
T 2w18_A          139 VLG--L-TK-RRLVSSS---GTLSDQQVEVMTFAED--GGGKENQFLMPPEETILTFAEVQGMQEAL---LGTTIMNNIV  206 (356)
T ss_dssp             EEE--E-TT-TEEEEEE---SSSTTCEEEEEEECTT--SCEEEEEEECCCSSCEEEEEEEETSTTEE---EEEETTSEEE
T ss_pred             EEe--c-CC-CcEEEec---ccCCCCcEEEEEECCC--CceeeeeccCCCceeeEEeeccCCCCceE---EEecCCCcEE
Confidence            222  2 22 3333321   1346789999999332  677788888888888889998   55653   3344677777


Q ss_pred             eeeccee--EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE----------EEccCCCeEEEEeccccee-EEe--
Q 013871          170 SYYGESK--LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV----------VYGFMPASATIFNKKCRPI-LEL--  234 (434)
Q Consensus       170 ~~~g~~~--l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av----------~~g~~~~~v~l~d~~~~~~-~~~--  234 (434)
                      .|.-.+.  ++.+.  +.+      .....+..++|+|+|..+++          ++|..|+++++||.+.... ..+  
T Consensus       207 IWDl~TGk~l~tL~--g~~------~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~  278 (356)
T 2w18_A          207 IWNLKTGQLLKKMH--IDD------SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLY  278 (356)
T ss_dssp             EEETTTCCEEEEEE--CCC---------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEE
T ss_pred             EEECCCCcEEEEEc--CCC------cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEe
Confidence            5543221  12221  100      01236778899999988753          4678889999999875443 221  


Q ss_pred             --CCcC-eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--Cce-EEEECCCCCEEEEEEcCCceeeCCc
Q 013871          235 --GSGP-YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       235 --~~~~-~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~-~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                        ..+. ...+..+.+|.++++++   .||+|+|||+.+++++.++.+|  .+. .++|||||++|++|+.      |++
T Consensus       279 ~~p~Gh~~~~lsg~~sg~~lASgS---~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~------D~T  349 (356)
T 2w18_A          279 CLPPGQAGRFLEGDVKDHCAAAIL---TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK------DGN  349 (356)
T ss_dssp             CCCTTCCCCEEEEEEETTEEEEEE---TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT------TSC
T ss_pred             eccCCCcceeEccccCCCEEEEEc---CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC------CCc
Confidence              1111 11222222366788887   5679999999999999999876  344 4899999999999999      999


Q ss_pred             EEEEee
Q 013871          309 IKIFHH  314 (434)
Q Consensus       309 i~iw~~  314 (434)
                      |||||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=4e-19  Score=168.66  Aligned_cols=294  Identities=11%  Similarity=0.041  Sum_probs=181.9

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcC-CCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEEeCC--CCCC
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTE-TGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFFDTT--DFPK   82 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~-~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~~~~--~~~~   82 (434)
                      .+++|++..    ..|+.|.+||+. +++  .+..+...    ..+..++|+||+++|+.+..  +.|.+|++.  ....
T Consensus         3 ~~~~l~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~   74 (343)
T 1ri6_A            3 LKQTVYIAS----PESQQIHVWNLNHEGALTLTQVVDVP----GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL   74 (343)
T ss_dssp             CEEEEEEEE----GGGTEEEEEEECTTSCEEEEEEEECS----SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             ceEEEEEeC----CCCCeEEEEEECCCCcEEEeeeEecC----CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce
Confidence            345555543    157899999995 453  33333322    45558999999998877743  799999987  3222


Q ss_pred             ceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           83 GILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        83 ~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      .....+. ...+..++|+|++ ..+.+..    ...+.|.+|++........+.... .......+.|+|+|+.|++...
T Consensus        75 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A           75 TFAAESALPGSLTHISTDHQG-QFVFVGS----YNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             EEEEEEECSSCCSEEEECTTS-SEEEEEE----TTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEG
T ss_pred             eeccccccCCCCcEEEEcCCC-CEEEEEe----cCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecC
Confidence            1222222 2367889999994 4443322    224689999994210022222222 2234667899999998765321


Q ss_pred             ecccccCceeecceeEEEEeeCC-ccee-----eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDG-THEG-----LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---  230 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~-~~~~-----~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---  230 (434)
                        .+       +  .++.+++.. ....     .........+..++|+|+|+++++. +..++.+.+||+..  ..   
T Consensus       149 --~~-------~--~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~-~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          149 --KQ-------D--RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             --GG-------T--EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEE
T ss_pred             --CC-------C--EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEE
Confidence              11       1  234444433 2111     2233334578899999999988764 55678999999842  21   


Q ss_pred             eEEe---C-----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc----CCEEEEEeeCC-CceEEEECCCCCEEEEE
Q 013871          231 ILEL---G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----DGKQLGTTRAE-CSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       231 ~~~~---~-----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~----~~~~i~~~~~~-~~~~~~wspdg~~l~ta  297 (434)
                      ...+   .     ......++|+|+|++|+++..  .++.|.+||+.    +.+.+..+..+ .+..++|+|||++|+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  294 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAA  294 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEe
Confidence            1111   1     123457999999998887664  34799999998    33555555433 46669999999999998


Q ss_pred             EcCCceeeCCcEEEEeec---Cce--eeeeec-ccceeeEEEcCC
Q 013871          298 TTAPRLQIDNGIKIFHHN---GSL--FFKKMF-DKLFQAEWKPVS  336 (434)
Q Consensus       298 s~~prl~~D~~i~iw~~~---g~~--~~~~~~-~~~~~~~w~p~~  336 (434)
                      ...     |+.|.||+++   |++  +..... ..-..+.|.|+.
T Consensus       295 ~~~-----~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~  334 (343)
T 1ri6_A          295 GQK-----SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE  334 (343)
T ss_dssp             CTT-----TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred             cCC-----CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence            853     8999999775   433  222222 345566666654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=1.1e-19  Score=178.79  Aligned_cols=261  Identities=11%  Similarity=0.036  Sum_probs=176.3

Q ss_pred             CCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCce
Q 013871           10 VGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGI   84 (434)
Q Consensus        10 ~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~   84 (434)
                      .+..|++.+...+ ...+.|++||+..+ .++.+..+.   ..+.+++|||||++|+++..    ..|++||+.+... .
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~---~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~  216 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R  216 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCC---CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-E
Confidence            3677777663211 11279999998754 455555543   55668999999999998853    3999999987543 2


Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                      ....+...+..++|||+ +..+++....  .....|.+|++.+   ++ ......+......+.|+|+|+.|++...  .
T Consensus       217 ~l~~~~~~~~~~~~spd-g~~la~~~~~--~g~~~i~~~d~~~---~~-~~~l~~~~~~~~~~~~spdg~~l~~~s~--~  287 (415)
T 2hqs_A          217 QVASFPRHNGAPAFSPD-GSKLAFALSK--TGSLNLYVMDLAS---GQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSD--Q  287 (415)
T ss_dssp             EEECCSSCEEEEEECTT-SSEEEEEECT--TSSCEEEEEETTT---CC-EEECCCCSSCEEEEEECTTSSEEEEEEC--T
T ss_pred             EeecCCCcccCEEEcCC-CCEEEEEEec--CCCceEEEEECCC---CC-EEeCcCCCCcccceEECCCCCEEEEEEC--C
Confidence            22223446889999999 5555543221  2235789999876   33 3455556677889999999999876532  1


Q ss_pred             cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccC-CCeEEEEecccceeEEe-CCcCeeEE
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL-GSGPYNTV  242 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~-~~~v~l~d~~~~~~~~~-~~~~~~~i  242 (434)
                      +       +...||.++..+.....+. .....+.+++|+|||+++++..... ...|.+||+.+.....+ ....+.++
T Consensus       288 ~-------g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~  359 (415)
T 2hqs_A          288 A-------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP  359 (415)
T ss_dssp             T-------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE
T ss_pred             C-------CCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCe
Confidence            1       2235788877665333222 2356788999999999998754321 24899999986655555 23478899


Q ss_pred             EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCE
Q 013871          243 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY  293 (434)
Q Consensus       243 ~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~  293 (434)
                      +|+|+|++|++++.++..+.|++||+..+. +..+..+  .+..++|||--.|
T Consensus       360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~~~~~~v~~~~~~~~~~~  411 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPYLHH  411 (415)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCCCCC
T ss_pred             EEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEeeCCCCCCcCCcccccccc
Confidence            999999999998854423389999997554 4444444  5667999997543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=1.1e-19  Score=190.62  Aligned_cols=314  Identities=11%  Similarity=0.071  Sum_probs=189.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE-EEEeecCcC--------------CCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV-YQLFQKNMT--------------KTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~-~~~~~~~~~--------------~~~~~~~~~S~d~~~la~   66 (434)
                      +..+.|+  |..+++.+     .|+ | +||+.+|+.+ ..+......              ...+.+++|||| ++++.
T Consensus        28 ~~~~~w~--g~~~~~~~-----~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIE-----GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEE-----TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEE
T ss_pred             CCCCcCc--CCeEEEEe-----CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEE
Confidence            3457788  66666666     455 8 9999999873 333332100              034668999999 77777


Q ss_pred             ecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CCCceeeeeecccc--
Q 013871           67 MATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QSQPLARRSFFRCS--  143 (434)
Q Consensus        67 ~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~~~i~~~~~~~~~--  143 (434)
                      ..++.|++||+.+... .....+...+..++|||+ +..+++. .     .+.|.+|++.+.. ..............  
T Consensus        98 ~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~Spd-G~~la~~-~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           98 FTQGGLVGFDMLARKV-TYLFDTNEETASLDFSPV-GDRVAYV-R-----NHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             EETTEEEEEETTTTEE-EEEECCTTCCTTCEECTT-SSEEEEE-E-----TTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             EECCEEEEEECCCCce-EEccCCcccccCCcCCCC-CCEEEEE-E-----CCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            7889999999976432 112222346788999999 5566553 2     2689999986500 00111221211111  


Q ss_pred             -------------eeEEEECCCCCeEEEEEEecccccCce---------------------eecceeEEEEeeCCcceee
Q 013871          144 -------------TVQLNWNRGSTGLLAVAQSDVDKTNQS---------------------YYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       144 -------------~~~~~ws~~G~~l~~~~~~~~d~~~~~---------------------~~g~~~l~~l~~~~~~~~~  189 (434)
                                   ...+.|+|||+.|++....+.......                     -.+...|+.+++.+.....
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence                         368999999999887642111000000                     0133467888877654333


Q ss_pred             eec--CCCCCeEEEEECcCCCEEEEEEccCC---CeEEEEecccc-eeEEe----CCc---CeeEEEECC--CCCeEEEE
Q 013871          190 VPL--RKEGPVHDVQWSYSGSEFAVVYGFMP---ASATIFNKKCR-PILEL----GSG---PYNTVRWNP--KGKFLCLA  254 (434)
Q Consensus       190 v~l--~~~~~i~~v~wspdg~~~av~~g~~~---~~v~l~d~~~~-~~~~~----~~~---~~~~i~~SP--~g~~l~~~  254 (434)
                      +..  .+...+.+++|+|||+.+++......   ..|.+||+... ....+    +..   .++.+.|||  ||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence            332  23467899999999999987443221   28999999755 43332    121   246789999  99988877


Q ss_pred             ecCCCCCeEEEEEcc-CCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCC----cEEEEeecCceeeee-ecc
Q 013871          255 GFGNLPGDMAFWDYV-DGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDN----GIKIFHHNGSLFFKK-MFD  325 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~-~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~prl~~D~----~i~iw~~~g~~~~~~-~~~  325 (434)
                      .   .+|.+.||+++ +++.+..+..+  .+.. ++|||||+.|++++..     ++    .|.+|+..+..+... +..
T Consensus       330 ~---~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~  401 (706)
T 2z3z_A          330 R---RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE-----ASPLERHFYCIDIKGGKTKDLTPES  401 (706)
T ss_dssp             C---TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS-----SCTTCBEEEEEETTCCCCEESCCSS
T ss_pred             c---cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC-----CCCceEEEEEEEcCCCCceeccCCC
Confidence            6   34678888766 55555555544  3444 7999999999888773     43    455555544333222 334


Q ss_pred             cceeeEEEcCCCCCCC
Q 013871          326 KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       326 ~~~~~~w~p~~~~~~~  341 (434)
                      .+..+.|+|++..++.
T Consensus       402 ~~~~~~~spdg~~l~~  417 (706)
T 2z3z_A          402 GMHRTQLSPDGSAIID  417 (706)
T ss_dssp             SEEEEEECTTSSEEEE
T ss_pred             ceEEEEECCCCCEEEE
Confidence            5788999999876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=2.6e-20  Score=191.17  Aligned_cols=271  Identities=12%  Similarity=0.032  Sum_probs=175.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~   77 (434)
                      |++++|||||++|++.+.    .|++++||++.+|+. ..+....  ...+..+.|||| +++++...    ...++|.+
T Consensus        24 ~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~-~~lt~~~--~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGET-VKLNREP--INSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             EEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEE-EECCSSC--CSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             hheeecCCCCCeEEEEEc----cCCceeEEEEcCCCc-Eeeeccc--ccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            688999999999999872    278999999976654 4443332  134558999999 76665532    45566655


Q ss_pred             CC--CCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           78 TD--FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        78 ~~--~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +.  ..... ......++...+|+|+++..+.+ ..    ..+.+.||++.+   ++. ..+.....  ..+.|+|||+.
T Consensus        96 ~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~-s~----~~~~~~l~d~~~---g~~-~~l~~~~~--~~~~~spDG~~  163 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFT-GA----TEDRVALYALDG---GGL-RELARLPG--FGFVSDIRGDL  163 (582)
T ss_dssp             ETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEE-EE----CSSCEEEEEEET---TEE-EEEEEESS--CEEEEEEETTE
T ss_pred             eccCCCccc-cccCCCCceeeeeCCCCCeEEEE-ec----CCCCceEEEccC---CcE-EEeecCCC--ceEEECCCCCE
Confidence            43  22211 11223456677999986543322 21    112345999876   332 22222222  78999999999


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILE  233 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~  233 (434)
                      |++.....   .     +...||.+++.++....+ ..+.+.+.+++|||||+.++  ++..++  .|.+||+.+.....
T Consensus       164 la~~~~~~---~-----~~~~i~~~d~~~g~~~~l-~~~~~~~~~~~~SpDG~~l~--~~~~~~~~~i~~~d~~~~~~~~  232 (582)
T 3o4h_A          164 IAGLGFFG---G-----GRVSLFTSNLSSGGLRVF-DSGEGSFSSASISPGMKVTA--GLETAREARLVTVDPRDGSVED  232 (582)
T ss_dssp             EEEEEEEE---T-----TEEEEEEEETTTCCCEEE-CCSSCEEEEEEECTTSCEEE--EEECSSCEEEEEECTTTCCEEE
T ss_pred             EEEEEEcC---C-----CCeEEEEEcCCCCCceEe-ecCCCccccceECCCCCEEE--EccCCCeeEEEEEcCCCCcEEE
Confidence            87653221   1     113478888766533332 34467789999999999999  345566  89999997655443


Q ss_pred             e--CCcCeeEEE--------ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCce
Q 013871          234 L--GSGPYNTVR--------WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       234 ~--~~~~~~~i~--------~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl  303 (434)
                      +  +...+..+.        |||||++++++.   .+|.+.+|++  ++.+.... ..+..++|| ||+.+++++.    
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~---~~g~~~l~~~--g~~~~~~~-~~v~~~~~s-dg~~l~~~s~----  301 (582)
T 3o4h_A          233 LELPSKDFSSYRPTAITWLGYLPDGRLAVVAR---REGRSAVFID--GERVEAPQ-GNHGRVVLW-RGKLVTSHTS----  301 (582)
T ss_dssp             CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE---ETTEEEEEET--TEEECCCS-SEEEEEEEE-TTEEEEEEEE----
T ss_pred             ccCCCcChhhhhhccccceeEcCCCcEEEEEE---cCCcEEEEEE--CCeeccCC-CceEEEEec-CCEEEEEEcC----
Confidence            3  344455566        999997777776   4579999999  76655322 345569999 9999998887    


Q ss_pred             eeCC---cEEEEeecC
Q 013871          304 QIDN---GIKIFHHNG  316 (434)
Q Consensus       304 ~~D~---~i~iw~~~g  316 (434)
                        +.   .+.+|+..+
T Consensus       302 --~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          302 --LSTPPRIVSLPSGE  315 (582)
T ss_dssp             --TTEEEEEEEETTCC
T ss_pred             --CCCCCeEEEEcCCC
Confidence              43   356666554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.86  E-value=7e-20  Score=175.31  Aligned_cols=273  Identities=11%  Similarity=0.093  Sum_probs=187.3

Q ss_pred             EcCCCcEEEEEeecCcCCCCCCeeeecCC---CcEEEEec-CCeEEEEeCCCCCCc--eeeeeecCCeeEEEEeCCCCCe
Q 013871           32 KTETGEAVYQLFQKNMTKTTWPSIRFSSD---EAVACRMA-TNEIQFFDTTDFPKG--ILYRLRVPGVAAFEVSKAPGSH  105 (434)
Q Consensus        32 d~~~g~~~~~~~~~~~~~~~~~~~~~S~d---~~~la~~~-~~~i~v~~~~~~~~~--~~~~~~~~~v~~~~~sp~~~~~  105 (434)
                      +....+.+..+..   |...+.+++|+||   |++|+++. ++.|++|++......  .....+...|.+++|+|+ +..
T Consensus        25 ~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~  100 (368)
T 3mmy_A           25 NHNPMKDIEVTSS---PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSK  100 (368)
T ss_dssp             SSCTTCCEECSSC---CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT-SSE
T ss_pred             CCCCcceeEeccC---CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcC-CCE
Confidence            3344445555444   3477889999999   58998885 689999999863322  233445678999999998 455


Q ss_pred             EEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE--CCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          106 VAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW--NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       106 ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w--s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      +++.     +.++.|++|++.+   .+.+. ...+...+..+.|  +++|..++...   .|..         +..+++.
T Consensus       101 l~s~-----~~dg~v~iwd~~~---~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~---------i~vwd~~  159 (368)
T 3mmy_A          101 VFTA-----SCDKTAKMWDLSS---NQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKT---------LKFWDTR  159 (368)
T ss_dssp             EEEE-----ETTSEEEEEETTT---TEEEE-EEECSSCEEEEEEEECSSCEEEEEEE---TTSE---------EEEECSS
T ss_pred             EEEE-----cCCCcEEEEEcCC---CCcee-eccccCceEEEEEEeCCCCCEEEEcc---CCCc---------EEEEECC
Confidence            5532     4567999999987   44443 5567888999999  88888765432   2322         3344433


Q ss_pred             CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--eEEe---CCcCeeEEEECCCCCe----EEEE
Q 013871          184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--ILEL---GSGPYNTVRWNPKGKF----LCLA  254 (434)
Q Consensus       184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~~~~---~~~~~~~i~~SP~g~~----l~~~  254 (434)
                      .. .....+.....+..+.+.++  .+++  +..++.+.+||++...  ....   ......++.+.+++..    ++++
T Consensus       160 ~~-~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (368)
T 3mmy_A          160 SS-NPMMVLQLPERCYCADVIYP--MAVV--ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG  234 (368)
T ss_dssp             CS-SCSEEEECSSCEEEEEEETT--EEEE--EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             CC-cEEEEEecCCCceEEEecCC--eeEE--EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence            32 22223333456667776653  4553  4557799999996432  2222   3455666776666654    8888


Q ss_pred             ecCCCCCeEEEEEccCC---EEEEEeeCC--------------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-C
Q 013871          255 GFGNLPGDMAFWDYVDG---KQLGTTRAE--------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-G  316 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~---~~i~~~~~~--------------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g  316 (434)
                      +   .+|.|.+||++..   +.+..+..+              .+..++|+|||++|++++.      |+.|+|||+. +
T Consensus       235 ~---~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~------dg~i~iwd~~~~  305 (368)
T 3mmy_A          235 S---IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS------DGRFSFWDKDAR  305 (368)
T ss_dssp             E---TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET------TSCEEEEETTTT
T ss_pred             c---CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc------CCeEEEEECCCC
Confidence            8   5679999999876   444555554              3667999999999999999      9999999996 4


Q ss_pred             ceeeee--ecccceeeEEEcCCCCCCCCc
Q 013871          317 SLFFKK--MFDKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       317 ~~~~~~--~~~~~~~~~w~p~~~~~~~~~  343 (434)
                      +++...  +...+..++|.|++..++...
T Consensus       306 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          306 TKLKTSEQLDQPISACCFNHNGNIFAYAS  334 (368)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred             cEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence            555443  346799999999998888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=1.1e-19  Score=199.05  Aligned_cols=307  Identities=11%  Similarity=0.012  Sum_probs=196.2

Q ss_pred             cceEEecCCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeec-----------------------------------
Q 013871            2 LLLLTCLRVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQK-----------------------------------   45 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~-----------------------------------   45 (434)
                      +.+++|||||+.|++.+.... ..+..|.+|++.+++........                                   
T Consensus       109 ~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw  188 (1045)
T 1k32_A          109 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIW  188 (1045)
T ss_dssp             SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEE
T ss_pred             cccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEE
Confidence            478999999996665542111 12246888888776542211000                                   


Q ss_pred             -----------CcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecC
Q 013871           46 -----------NMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        46 -----------~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                                 ..+...+.++.|++| .+++.+ .++.+++|.+..... ....+ ....+..+.|||+ +..+++.   
T Consensus       189 ~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~~~~~~~~SpD-G~~la~~---  262 (1045)
T 1k32_A          189 IEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK-DLRKHTSFTDYYPRHLNTD-GRRILFS---  262 (1045)
T ss_dssp             EEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC-SCEECCCCCSSCEEEEEES-SSCEEEE---
T ss_pred             EECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC-cceEecCCCCcceeeEcCC-CCEEEEE---
Confidence                       001234456788888 444444 346778887543111 11121 2234667799999 4555543   


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeee-----------cccceeEEEEC-CCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          113 SKGSPASVQIYACGKDLQSQPLARRSF-----------FRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~-----------~~~~~~~~~ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                         ..+.|.+|++.    ...+.....           +......+.|+ |+|+.|++..             ...++.+
T Consensus       263 ---~~~~i~~~d~~----~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-------------~~~i~~~  322 (1045)
T 1k32_A          263 ---KGGSIYIFNPD----TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-------------RGQAFIQ  322 (1045)
T ss_dssp             ---ETTEEEEECTT----TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-------------TTEEEEE
T ss_pred             ---eCCEEEEecCC----ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-------------cCEEEEE
Confidence               24678888873    233333222           22356789999 9999987753             1136666


Q ss_pred             eeCCcceeeeecCCCC-CeEEEEECcCCCEEEEEEccCCCeEE-EEecccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871          181 TTDGTHEGLVPLRKEG-PVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~-~i~~v~wspdg~~~av~~g~~~~~v~-l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      +..+.....+ ..+.+ .+..++|+ ||+.+++++.  +..+. +||+.+.....+  +...+..++|||||++|++++ 
T Consensus       323 ~~~~~~~~~~-~~~~~~~~~~~~~s-dg~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~-  397 (1045)
T 1k32_A          323 DVSGTYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTR--EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-  397 (1045)
T ss_dssp             CTTSSBEEEC-SCCSCEEEEEECSS-SEEEEEEEET--TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-
T ss_pred             cCCCCceEEc-cCCCcceEEeeeEc-CCCeEEEEEC--CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-
Confidence            6655432222 22345 78999999 9999997543  66888 899876655544  456788999999999999988 


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCC---c-eeeCCcEEEEeecCceeeee--ecccce
Q 013871          257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAP---R-LQIDNGIKIFHHNGSLFFKK--MFDKLF  328 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~p---r-l~~D~~i~iw~~~g~~~~~~--~~~~~~  328 (434)
                        .++.|++||+.+++.......+  .+..++|||||++|++++...   . ...++.|++||+.+..+...  +.....
T Consensus       398 --~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~  475 (1045)
T 1k32_A          398 --DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY  475 (1045)
T ss_dssp             --TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE
T ss_pred             --CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccC
Confidence              4569999999999877766444  445699999999999987620   0 00124899999976544332  334577


Q ss_pred             eeEEEcCCCCCCC
Q 013871          329 QAEWKPVSPDKFG  341 (434)
Q Consensus       329 ~~~w~p~~~~~~~  341 (434)
                      .+.|.|++..++.
T Consensus       476 ~~~~spdG~~l~~  488 (1045)
T 1k32_A          476 APAFDADSKNLYY  488 (1045)
T ss_dssp             EEEECTTSCEEEE
T ss_pred             CceEcCCCCEEEE
Confidence            8899999987664

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=1.8e-19  Score=190.32  Aligned_cols=315  Identities=10%  Similarity=0.015  Sum_probs=191.6

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC--CeeeecCCCcEEEEecC----------C
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW--PSIRFSSDEAVACRMAT----------N   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~--~~~~~S~d~~~la~~~~----------~   70 (434)
                      .++.|||||++|++.       |++|++||+.+|++...+..+......+  ..++|||||++|++..+          +
T Consensus        20 ~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            578999999999872       6899999999999866665543211112  13789999999998865          5


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---------
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---------  141 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---------  141 (434)
                      .+.+||+.+... .....+...+...+|||+ +..||+..      ...|.+|++..   +.. .+++...         
T Consensus        93 ~~~~~d~~~~~~-~~l~~~~~~~~~~~~SPd-G~~la~~~------~~~i~~~~~~~---~~~-~~lt~~g~~~~~~~g~  160 (740)
T 4a5s_A           93 SYDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW------NNDIYVKIEPN---LPS-YRITWTGKEDIIYNGI  160 (740)
T ss_dssp             EEEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE------TTEEEEESSTT---SCC-EECCSCCBTTTEEESB
T ss_pred             EEEEEECCCCcE-EEcccCCCcceeeEECCC-CCEEEEEE------CCeEEEEECCC---Cce-EEEcCCCCccceecCc
Confidence            778999987432 112223456899999999 55665532      24788888865   332 2222211         


Q ss_pred             ----------cceeEEEECCCCCeEEEEEEecccccCcee--------------------------ecceeEEEEeeCC-
Q 013871          142 ----------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY--------------------------YGESKLNYLTTDG-  184 (434)
Q Consensus       142 ----------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~--------------------------~g~~~l~~l~~~~-  184 (434)
                                .....+.|||||+.|++....+..  ...|                          .....|+.+++.+ 
T Consensus       161 ~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~  238 (740)
T 4a5s_A          161 TDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL  238 (740)
T ss_dssp             CCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred             ccccccchhcCCCcceEECCCCCEEEEEEEcccC--CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence                      111348999999998876422110  1110                          1123577777766 


Q ss_pred             --c---ceeeeec-----CCCCCeEEEEECcCCCEEEEEEccC--CCeEEEEecccce-------eEE----eCCcCee-
Q 013871          185 --T---HEGLVPL-----RKEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRP-------ILE----LGSGPYN-  240 (434)
Q Consensus       185 --~---~~~~v~l-----~~~~~i~~v~wspdg~~~av~~g~~--~~~v~l~d~~~~~-------~~~----~~~~~~~-  240 (434)
                        .   ....+..     .+...+..++|||||+.+++.....  ...|.+||+.+..       +..    -+...++ 
T Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~  318 (740)
T 4a5s_A          239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR  318 (740)
T ss_dssp             CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred             CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence              4   2223322     1455688999999998666543322  2378899986432       222    2344443 


Q ss_pred             ----EEEECCCCCeEE-EEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEe
Q 013871          241 ----TVRWNPKGKFLC-LAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFH  313 (434)
Q Consensus       241 ----~i~~SP~g~~l~-~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~-prl~~D~~i~iw~  313 (434)
                          .+.|||||+.|+ ..+..+....|++||..+++......+. .+..+ +++||+.|+..+.. ..-.....|...+
T Consensus       319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~-~~~d~~~i~f~~~~~~~~~~~~~ly~v~  397 (740)
T 4a5s_A          319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQ  397 (740)
T ss_dssp             SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEE-EEEeCCEEEEEEecCCCCCceeEEEEEE
Confidence                789999999877 6654433468999999887666555554 33332 33558877776652 0000012344444


Q ss_pred             ecCceee-eee------cccceeeEEEcCCCCC
Q 013871          314 HNGSLFF-KKM------FDKLFQAEWKPVSPDK  339 (434)
Q Consensus       314 ~~g~~~~-~~~------~~~~~~~~w~p~~~~~  339 (434)
                      +.|.... ...      ......+.|+|++..+
T Consensus       398 ~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~  430 (740)
T 4a5s_A          398 LIDYTKVTCLSCELNPERCQYYSVSFSKEAKYY  430 (740)
T ss_dssp             TTEEEEEEESSTTTSTTTBCBEEEEECTTSSEE
T ss_pred             CCCCCcceeeccccCCCCCceEEEEECCCCCEE
Confidence            4554322 111      1346788899887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=4.3e-19  Score=167.96  Aligned_cols=269  Identities=9%  Similarity=-0.010  Sum_probs=181.0

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCC-CCCeeeecCCCcEEEEe-c-CCeEEEEeCCCCCCceeeee
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKT-TWPSIRFSSDEAVACRM-A-TNEIQFFDTTDFPKGILYRL   88 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~-~~~~~~~S~d~~~la~~-~-~~~i~v~~~~~~~~~~~~~~   88 (434)
                      .+|++.+     .++.|.+||+.+++.+..+.....  . ....++|+||+++++.. . ++.|.+||..+....  ..+
T Consensus         2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~--~~~   72 (337)
T 1pby_B            2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL--GRI   72 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE--EEE
T ss_pred             cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCC--CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE--eeE
Confidence            5788888     789999999999998888765421  1 34589999999866544 3 569999998775432  223


Q ss_pred             ecC-------CeeEEEEeCCCCCeEEEEecC----CCC---CCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           89 RVP-------GVAAFEVSKAPGSHVAVFVPE----SKG---SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        89 ~~~-------~v~~~~~sp~~~~~ia~~~~~----~~~---~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...       .+..++|+|++ ..+++....    ...   .++.|.+|++.+   .+.+..... ......+.|+|+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~  147 (337)
T 1pby_B           73 DLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGS  147 (337)
T ss_dssp             ECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSS
T ss_pred             EcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC-CCCcceeEECCCCC
Confidence            321       56789999984 444433210    011   357899999976   555544443 33456788999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC---------------
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA---------------  219 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~---------------  219 (434)
                      .|++.     +         ..++.++...... ...+........+.|+|||+.+++. +...+               
T Consensus       148 ~l~~~-----~---------~~i~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~~~~  211 (337)
T 1pby_B          148 KLYGL-----G---------RDLHVMDPEAGTL-VEDKPIQSWEAETYAQPDVLAVWNQ-HESSGVMATPFYTARKDIDP  211 (337)
T ss_dssp             CEEEE-----S---------SSEEEEETTTTEE-EEEECSTTTTTTTBCCCBCCCCCCC-CTTTTEEEEEEEEEBTTSCT
T ss_pred             EEEEe-----C---------CeEEEEECCCCcE-eeeeeccccCCCceeCCCccEEeee-ccCCCceeeeeecccccccc
Confidence            87664     1         1256666554422 1112111111234889999877642 32222               


Q ss_pred             --------eEEEEecccceeEEe----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEE
Q 013871          220 --------SATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE  286 (434)
Q Consensus       220 --------~v~l~d~~~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~  286 (434)
                              .+.+||++...+..+    +......++|+|+|++|+++.     +.|.+||+.+++.+..+..+ .+..++
T Consensus       212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~  286 (337)
T 1pby_B          212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSVN  286 (337)
T ss_dssp             TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEEE
T ss_pred             ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEeC-----CeEEEEECCCCcCcceecCCCceeeEE
Confidence                    468889875443222    345677899999999998872     69999999999888777644 666799


Q ss_pred             ECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871          287 WSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       287 wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~  321 (434)
                      |+|||++|++++.      |+.|++|+.. ++.+..
T Consensus       287 ~s~dg~~l~~~~~------~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          287 VSTDGSTVWLGGA------LGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             ECTTSCEEEEESB------SSEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEEcC------CCcEEEEECcCCcEEEE
Confidence            9999999999876      9999999985 454443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=9.6e-20  Score=199.46  Aligned_cols=291  Identities=11%  Similarity=0.030  Sum_probs=196.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~   80 (434)
                      |.++.|||+ .++++.+     .|+.+.||.+.. +..+..+..+    ..+..+.|||||++++++.+++|.+|+... 
T Consensus       206 v~~~~~s~d-~l~~~~~-----~dg~~~l~~~~~~g~~~~~l~~~----~~~~~~~~SpDG~~la~~~~~~i~~~d~~~-  274 (1045)
T 1k32_A          206 VSSPVIVGH-RIYFITD-----IDGFGQIYSTDLDGKDLRKHTSF----TDYYPRHLNTDGRRILFSKGGSIYIFNPDT-  274 (1045)
T ss_dssp             CEEEEEETT-EEEEEEC-----TTSSCEEEEEETTSCSCEECCCC----CSSCEEEEEESSSCEEEEETTEEEEECTTT-
T ss_pred             ccceEEeCC-EEEEEEe-----ccCceEEEEEeCCCCcceEecCC----CCcceeeEcCCCCEEEEEeCCEEEEecCCc-
Confidence            567889988 5555544     567788887642 3334444433    234578999999999999999999999833 


Q ss_pred             CCceeeeeec-------------CCeeEEEEe-CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-cee
Q 013871           81 PKGILYRLRV-------------PGVAAFEVS-KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-STV  145 (434)
Q Consensus        81 ~~~~~~~~~~-------------~~v~~~~~s-p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~  145 (434)
                      ..  ...+..             ..+..++|| |+ +..+++..      .+.+.+|++..   +. ......+.. ...
T Consensus       275 ~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~------~~~i~~~~~~~---~~-~~~~~~~~~~~~~  341 (1045)
T 1k32_A          275 EK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS------RGQAFIQDVSG---TY-VLKVPEPLRIRYV  341 (1045)
T ss_dssp             CC--EEECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE------TTEEEEECTTS---SB-EEECSCCSCEEEE
T ss_pred             eE--eeeeccCcccccccccccccccceeeecCCC-CCEEEEEE------cCEEEEEcCCC---Cc-eEEccCCCcceEE
Confidence            21  112221             258899999 98 45555543      35788888765   33 333444444 667


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEE-EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN-YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~-~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      .+.|+ +|+.|++...            ...++ .++..+.....+. .+...+..++|||||+.+++  +..++.+.+|
T Consensus       342 ~~~~s-dg~~l~~~s~------------~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~  405 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTR------------EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVV--ANDRFEIMTV  405 (1045)
T ss_dssp             EECSS-SEEEEEEEET------------TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEE--EETTSEEEEE
T ss_pred             eeeEc-CCCeEEEEEC------------CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEE--ECCCCeEEEE
Confidence            89999 9998876521            12466 6666555333333 45678999999999999995  4557899999


Q ss_pred             ecccceeEE---eCCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCC
Q 013871          225 NKKCRPILE---LGSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGR  292 (434)
Q Consensus       225 d~~~~~~~~---~~~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~  292 (434)
                      |+.......   .+.+.+..++|||||++|++++.+.       .++.|++||+.+++ +..+..+  ....++|+|||+
T Consensus       406 d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          406 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSK  484 (1045)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSC
T ss_pred             ECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCC
Confidence            997544332   3667789999999999998876421       23589999999988 4444433  345589999999


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCC
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK  339 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~  339 (434)
                      +|++++.      ++..++|+.....+.......++.+.+.+.....
T Consensus       485 ~l~~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (1045)
T 1k32_A          485 NLYYLSY------RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  525 (1045)
T ss_dssp             EEEEEES------CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             EEEEEec------ccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence            9999998      8888888864332222222345555555554443

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.85  E-value=5.8e-20  Score=173.88  Aligned_cols=226  Identities=15%  Similarity=0.186  Sum_probs=160.8

Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEecc
Q 013871           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSDV  164 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~~  164 (434)
                      ..|...|.+++|+|+ +..++.     ++.++.|+||++.+.. ...+.....|...+..+.|+++  |+.|+.   ...
T Consensus        10 ~~H~~~V~~v~~s~~-g~~las-----gs~D~~v~lwd~~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s---~s~   79 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYY-GTRLAT-----CSSDRSVKIFDVRNGG-QILIADLRGHEGPVWQVAWAHPMYGNILAS---CSY   79 (316)
T ss_dssp             ----CCEEEEEECGG-GCEEEE-----EETTTEEEEEEEETTE-EEEEEEEECCSSCEEEEEECCGGGSSCEEE---EET
T ss_pred             ccccCeEEEeeEcCC-CCEEEE-----EeCCCeEEEEEecCCC-cEEEEEEcCCCccEEEEEeCCCCCCCEEEE---EEC
Confidence            345667999999998 455653     3567899999997621 1245667778889999999863  776543   235


Q ss_pred             cccCceeecceeEEEEeeCCc-ceeeeec-CCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccce----eEE--e
Q 013871          165 DKTNQSYYGESKLNYLTTDGT-HEGLVPL-RKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCRP----ILE--L  234 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~-~~~~v~l-~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~~----~~~--~  234 (434)
                      |.+.+.|.       +  ... ......+ .+.+.|.+++|+|+  |..|+  +|..|+.|++||++...    ...  .
T Consensus        80 D~~v~iWd-------~--~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~la--sgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           80 DRKVIIWR-------E--ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA--CGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             TSCEEEEC-------C--SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEE--EECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             CCEEEEEE-------C--CCCcceEEEEccCCCCceEEEEECCCCCCcEEE--EEcCCCCEEEEecCCCCCcceeeeecc
Confidence            55555432       2  211 1122222 35789999999998  66676  68889999999987532    122  2


Q ss_pred             CCcCeeEEEECCC-----------------CCeEEEEecCCCCCeEEEEEccCC---EEEEEeeCC--CceEEEECCCC-
Q 013871          235 GSGPYNTVRWNPK-----------------GKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDG-  291 (434)
Q Consensus       235 ~~~~~~~i~~SP~-----------------g~~l~~~~~~~~~g~i~iwd~~~~---~~i~~~~~~--~~~~~~wspdg-  291 (434)
                      |...++++.|+|+                 +++|++++   .+|.|++||++..   +.+..+.+|  .+..++|+|++ 
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG---CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB---TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEec---CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            6778999999998                 47888888   5679999999754   567777776  56679999997 


Q ss_pred             ---CEEEEEEcCCceeeCCcEEEEeecCc-------eeeeeecccceeeEEEcCCCCCCCC
Q 013871          292 ---RYFMTATTAPRLQIDNGIKIFHHNGS-------LFFKKMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ---~~l~tas~~prl~~D~~i~iw~~~g~-------~~~~~~~~~~~~~~w~p~~~~~~~~  342 (434)
                         .+|++++.      |+.|+||++...       .+...+...++.++|+|++..++..
T Consensus       226 ~~~~~las~s~------D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~  280 (316)
T 3bg1_A          226 LPTSTIASCSQ------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS  280 (316)
T ss_dssp             CSCCEEEEEET------TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEE
T ss_pred             CCCceEEEEcC------CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEE
Confidence               89999999      999999998641       1223345679999999998877765

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=3.9e-19  Score=170.98  Aligned_cols=228  Identities=14%  Similarity=0.225  Sum_probs=166.4

Q ss_pred             eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEe
Q 013871           85 LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQS  162 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~  162 (434)
                      ....|...|.+++|+|+ +..+++-     +.++.|+||++.... ...+.....|...+..+.|+++  +..|+..   
T Consensus         6 ~~~~h~~~v~~~~~s~~-~~~l~~~-----~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---   75 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYY-GKRLATC-----SSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASC---   75 (379)
T ss_dssp             CEEECCCCEEEEEECSS-SSEEEEE-----ETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEE---
T ss_pred             EecCCcccEEEEEEcCC-CCEEEEE-----ECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCCEEEEe---
Confidence            45667788999999998 5556542     456789999997321 4556667778889999999987  7776543   


Q ss_pred             cccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc---eeE--E
Q 013871          163 DVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PIL--E  233 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~---~~~--~  233 (434)
                      ..|...+       +|.+  ....  .......+...|.+++|+|+  +..|+  ++..++.|.+||++..   ...  .
T Consensus        76 ~~dg~v~-------iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           76 SYDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             ETTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCTTSCCCEEEEE
T ss_pred             ccCCEEE-------EEEc--CCCceeEeeeecCCCcceEEEEeCCCCCCCEEE--EecCCCcEEEEecCCCCceeeEEec
Confidence            2343333       3333  2221  11222235789999999999  88888  4677899999999643   222  2


Q ss_pred             eCCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---C
Q 013871          234 LGSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---G  291 (434)
Q Consensus       234 ~~~~~~~~i~~SP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g  291 (434)
                      .+...++++.|+|             ++++|++++   .+|.|++||+.++    ..+..+.+|  .+..++|+|+   |
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEe---CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            3788999999999             699999998   5679999999865    345566655  5667999999   8


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeecCc------eeeee--ecccceeeEEEcCCCCCCCC
Q 013871          292 RYFMTATTAPRLQIDNGIKIFHHNGS------LFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~~prl~~D~~i~iw~~~g~------~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ++|++++.      |+.|+||++...      .+...  +...+..+.|.|++..++..
T Consensus       222 ~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~  274 (379)
T 3jrp_A          222 SYLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  274 (379)
T ss_dssp             EEEEEEET------TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             CeEEEEeC------CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEe
Confidence            99999999      999999999653      11111  44578999999999887764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.6e-19  Score=189.92  Aligned_cols=315  Identities=10%  Similarity=0.019  Sum_probs=190.5

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQ   73 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~   73 (434)
                      .++|||||+++++ +     .|++|++||+.+|+....+..+......+.+++|||||++|+++.+          ++|+
T Consensus        20 ~~~~s~dg~~~~~-~-----~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~   93 (719)
T 1z68_A           20 FPNWISGQEYLHQ-S-----ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY   93 (719)
T ss_dssp             CCEESSSSEEEEE-C-----TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             ccEECCCCeEEEE-c-----CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence            5789999977764 3     4789999999999876655443210113558999999999998754          6999


Q ss_pred             EEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc------------
Q 013871           74 FFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR------------  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~------------  141 (434)
                      +||+..........+. ..+..++|||+ +..|++..      .+.|++|++..   +.... .+...            
T Consensus        94 ~~d~~~g~~~~~~~l~-~~~~~~~~SPD-G~~la~~~------~~~i~~~~~~~---g~~~~-l~~~~~~~~v~~g~~~~  161 (719)
T 1z68_A           94 IYDLSNGEFVRGNELP-RPIQYLCWSPV-GSKLAYVY------QNNIYLKQRPG---DPPFQ-ITFNGRENKIFNGIPDW  161 (719)
T ss_dssp             EEETTTTEECCSSCCC-SSBCCEEECSS-TTCEEEEE------TTEEEEESSTT---SCCEE-CCCCCBTTTEEESSCCH
T ss_pred             EEECCCCccccceecC-cccccceECCC-CCEEEEEE------CCeEEEEeCCC---CCcEE-EecCCCcCCeEcccccc
Confidence            9998764321002222 46888999999 55565532      24899999876   33322 11111            


Q ss_pred             -------cceeEEEECCCCCeEEEEEEecccccCcee------------------------ecceeEEEEeeCCccee--
Q 013871          142 -------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSY------------------------YGESKLNYLTTDGTHEG--  188 (434)
Q Consensus       142 -------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~------------------------~g~~~l~~l~~~~~~~~--  188 (434)
                             .....+.|||||+.|++....+.  ....+                        .....|+.+++.+....  
T Consensus       162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~  239 (719)
T 1z68_A          162 VYEEEMLATKYALWWSPNGKFLAYAEFNDT--DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP  239 (719)
T ss_dssp             HHHHHTTCSSCCEEECTTSSEEEEEEEECT--TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC
T ss_pred             eeeeecccCcccEEECCCCCEEEEEEECCC--CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce
Confidence                   11147999999999887643211  11111                        02235777777665321  


Q ss_pred             -eeec-----CCCCCeEEEEECcCCCEEEEEEccCC--CeEEEEe----ccccee---E----EeCCcCee-----EEEE
Q 013871          189 -LVPL-----RKEGPVHDVQWSYSGSEFAVVYGFMP--ASATIFN----KKCRPI---L----ELGSGPYN-----TVRW  244 (434)
Q Consensus       189 -~v~l-----~~~~~i~~v~wspdg~~~av~~g~~~--~~v~l~d----~~~~~~---~----~~~~~~~~-----~i~~  244 (434)
                       .+..     .+.+.+.+++||||++.++.......  ..|.+||    ..+...   .    ..+.+.+.     .+.|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (719)
T 1z68_A          240 QEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVF  319 (719)
T ss_dssp             EECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEE
T ss_pred             eEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEE
Confidence             1111     24567899999999754443222222  2588889    653322   2    22345555     7899


Q ss_pred             CCCCCeEEEE-ecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cce-
Q 013871          245 NPKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL-  318 (434)
Q Consensus       245 SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~-  318 (434)
                      ||||+.|++. +..+....|++||+.+++......+. .+..+.++ ||+.|+..+..- -..++.++||.+.   |.. 
T Consensus       320 spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~~~~g~~~  397 (719)
T 1z68_A          320 SYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRISIGSYPPS  397 (719)
T ss_dssp             CTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEECSSSSCC
T ss_pred             CCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEeCCCCCCC
Confidence            9999977663 32222347888898776533332322 34455666 999988888610 0002778999884   321 


Q ss_pred             eeee------ecccceeeEEEcCCCCCC
Q 013871          319 FFKK------MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       319 ~~~~------~~~~~~~~~w~p~~~~~~  340 (434)
                      ....      +...+..+.|+|++..++
T Consensus       398 ~~~l~~~~~~~~~~~~~~~~s~dg~~l~  425 (719)
T 1z68_A          398 KKCVTCHLRKERCQYYTASFSDYAKYYA  425 (719)
T ss_dssp             EEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred             ceeccCccCCCCCceEEEEECCCCCEEE
Confidence            1111      112456788888876654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=3.7e-17  Score=157.13  Aligned_cols=301  Identities=14%  Similarity=0.122  Sum_probs=179.1

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEc--CCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEeCC
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKT--ETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFDTT   78 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~--~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~~~   78 (434)
                      ...+...+|...+ +....++.|.+|++  .+|+.........   .....++|||||++|+++..     +.|.+|++.
T Consensus         8 ~~~~~~~~~~vg~-y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~   83 (361)
T 3scy_A            8 STTDSELTMLVGT-YTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFD   83 (361)
T ss_dssp             CGGGGEEEEEEEE-CCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEE
T ss_pred             hhCCCceEEEEEe-ccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEe
Confidence            3445445555444 44445788999966  5675433222111   33447899999998888754     599999876


Q ss_pred             CC-CCc-eeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------ccc
Q 013871           79 DF-PKG-ILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------RCS  143 (434)
Q Consensus        79 ~~-~~~-~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------~~~  143 (434)
                      .. ... ......  ......+++  + +..+.+..    ...+.|.+|++.....-..+.....+           ...
T Consensus        84 ~~~g~~~~~~~~~~~~~~p~~~~~--d-g~~l~~~~----~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~  156 (361)
T 3scy_A           84 KEKGTLHLLNTQKTMGADPCYLTT--N-GKNIVTAN----YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH  156 (361)
T ss_dssp             TTTTEEEEEEEEECSSSCEEEEEE--C-SSEEEEEE----TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred             CCCCcEEEeeEeccCCCCcEEEEE--C-CCEEEEEE----CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence            53 111 112222  223455555  4 44443322    23468999998752111111111111           112


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc------c-----eeeeecCCCCCeEEEEECcCCCEEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT------H-----EGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~------~-----~~~v~l~~~~~i~~v~wspdg~~~av  212 (434)
                      ...+.|+|+|++|++...  .+       +...+|.++..+.      .     .....+........++|+|||+++++
T Consensus       157 ~~~~~~spdg~~l~~~~~--~~-------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  227 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDL--GT-------DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYL  227 (361)
T ss_dssp             EEEEEECTTSSEEEEEET--TT-------TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             ceEEEECCCCCEEEEEeC--CC-------CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEE
Confidence            256899999998766421  11       1112344433221      0     02233444556789999999998876


Q ss_pred             EEccCCCeEEEEeccccee---EEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc--CCE--EEEEeeC-
Q 013871          213 VYGFMPASATIFNKKCRPI---LEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DGK--QLGTTRA-  279 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~~~~~---~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~--~~~--~i~~~~~-  279 (434)
                      . +..++.|.+||+....+   ..+     +......++|||||++|+++..+ .++.|.+|+++  +++  .+..+.. 
T Consensus       228 ~-~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-~~~~i~v~~~~~~~g~~~~~~~~~~g  305 (361)
T 3scy_A          228 I-NEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-KADGVAIFKVDETNGTLTKVGYQLTG  305 (361)
T ss_dssp             E-ETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-SSCEEEEEEECTTTCCEEEEEEEECS
T ss_pred             E-cCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-CCCEEEEEEEcCCCCcEEEeeEecCC
Confidence            4 55678999999864432   222     12335689999999999887754 13689999985  443  4444443 


Q ss_pred             CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec---Cceeee---eecccceeeEEE
Q 013871          280 ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFK---KMFDKLFQAEWK  333 (434)
Q Consensus       280 ~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~---g~~~~~---~~~~~~~~~~w~  333 (434)
                      ..+..++|+|||++|+++...     ++.|.+|+++   |++...   .+.....++.|.
T Consensus       306 ~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          306 IHPRNFIITPNGKYLLVACRD-----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             SCCCEEEECTTSCEEEEEETT-----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCceEEECCCCCEEEEEECC-----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            356679999999999999853     7899998774   544332   234556667664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=3.2e-19  Score=165.09  Aligned_cols=230  Identities=12%  Similarity=0.027  Sum_probs=153.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC-CcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET-GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~-g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~   75 (434)
                      |.+++|||||++|++.+      ++.|.+||+.+ ++....+...  +...+.+++|+||+++|+++..     ..|.++
T Consensus        44 v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~  115 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEFGKSAIYLL  115 (297)
T ss_dssp             CEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEE
T ss_pred             eEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCCCcceEEEE
Confidence            67899999999999865      57899999999 8765544332  1245668999999999998862     355555


Q ss_pred             eCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           76 DTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      +...... . .-.....+..+.|+|+ +..+++...    ..+.++||.+...  .........+......+.|+|+|+.
T Consensus       116 ~~~~~~~-~-~~~~~~~~~~~~~spd-g~~l~~~~~----~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~  186 (297)
T 2ojh_A          116 PSTGGTP-R-LMTKNLPSYWHGWSPD-GKSFTYCGI----RDQVFDIYSMDID--SGVETRLTHGEGRNDGPDYSPDGRW  186 (297)
T ss_dssp             ETTCCCC-E-ECCSSSSEEEEEECTT-SSEEEEEEE----ETTEEEEEEEETT--TCCEEECCCSSSCEEEEEECTTSSE
T ss_pred             ECCCCce-E-EeecCCCccceEECCC-CCEEEEEEC----CCCceEEEEEECC--CCcceEcccCCCccccceECCCCCE
Confidence            5544221 1 1122335888899999 455543221    2356788887532  3344445555667789999999998


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEec
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNK  226 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~---------~~~~v~l~d~  226 (434)
                      |++....  +       +...||.++..+.....+ ......+..++|+|+|+++++.+..         .+..+.+||+
T Consensus       187 l~~~~~~--~-------~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          187 IYFNSSR--T-------GQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             EEEEECT--T-------SSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred             EEEEecC--C-------CCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence            8765321  2       223467776555432222 2234678899999999999876543         2257999999


Q ss_pred             ccce---eEEe--CCcCeeEEEECCCCCeEEEEecCC
Q 013871          227 KCRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       227 ~~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      ++..   +..+  +...+..+.|+|+|++|++++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          257 DGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            7543   3332  567889999999999999887654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=9.5e-20  Score=174.30  Aligned_cols=243  Identities=10%  Similarity=0.082  Sum_probs=157.7

Q ss_pred             eecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC------
Q 013871           56 RFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD------  128 (434)
Q Consensus        56 ~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~------  128 (434)
                      .+.+|+.+|+++ .|+.|++||+.+....  ..+....|..+.++|.    ++.     .+.++.|++|+....      
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~--~~~~~~~v~~~~~~~~----~~s-----~s~D~~i~~w~~~~~~~~~~~  111 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI--TTITTPNPRTGGEHPA----IIS-----RGPCNRLLLLYPGNQITILDS  111 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCE--EEEEEECCCTTCCCCS----EEE-----ECSTTEEEEEETTTEEEEEET
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEE--EEEecCCceeeeeCCc----eEE-----ecCCCeEEEEEccCceEEeec
Confidence            456788889888 5789999999875532  3333455666667765    221     244567777765421      


Q ss_pred             CCCCceeeee-ecccceeEEEECC--CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEEC
Q 013871          129 LQSQPLARRS-FFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWS  204 (434)
Q Consensus       129 ~~~~~i~~~~-~~~~~~~~~~ws~--~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~ws  204 (434)
                      ...+.+.... .+...+..+.|+|  +|+.++..   ..|.+.+         ++++.......+ .......|.+++|+
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~---------~wd~~~~~~~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIG---------FQSYEDDSQYIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEE---------EEESSSSCEEEEECCCSSCCCCEEEEC
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEE---------EEECCCCcEEEEEecCCCCceEEEEEC
Confidence            0033233322 3346788999999  99886543   2444433         233333222111 12235679999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccce-e---EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKCRP-I---LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~~~-~---~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      |+|..|+  +|..++.|++||++... +   ... |.+++++++|+|+|++|++++ +   +.|++||+++++.+..+..
T Consensus       180 pdg~~la--sg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~~v~iwd~~~~~~~~~~~~  253 (343)
T 3lrv_A          180 KDSLLLA--LYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---QTVVCFDLRKDVGTLAYPT  253 (343)
T ss_dssp             TTSCEEE--EECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---SBEEEEETTSSTTCBSSCC
T ss_pred             CCCCEEE--EEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---CeEEEEEcCCCCcceeecc
Confidence            9999988  58889999999996432 2   233 689999999999999999998 3   2899999998765544332


Q ss_pred             ---C--Cc--eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeeecccceeeEEEc
Q 013871          280 ---E--CS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKMFDKLFQAEWKP  334 (434)
Q Consensus       280 ---~--~~--~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~~~~~~~~~w~p  334 (434)
                         +  .+  ..++|+|+|++|++++..     |+.++||++... .....  ..+..+.|.|
T Consensus       254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~-----d~~i~v~~~~~~~~~~~~--~~~~~~~~~~  309 (343)
T 3lrv_A          254 YTIPEFKTGTVTYDIDDSGKNMIAYSNE-----SNSLTIYKFDKKTKNWTK--DEESALCLQS  309 (343)
T ss_dssp             CBC-----CCEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCSEEE--EEEEECCC--
T ss_pred             cccccccccceEEEECCCCCEEEEecCC-----CCcEEEEEEcccccceEe--cCceeEecCc
Confidence               1  11  359999999999998865     889999999543 11111  3455566776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.84  E-value=8e-19  Score=166.08  Aligned_cols=210  Identities=18%  Similarity=0.288  Sum_probs=140.1

Q ss_pred             cceEEecC--CCcEEEEEecCCCCCCCcEEEEEcCCC---------cEEEEEeecCcCCCCCCeeeecCC--CcEEEEe-
Q 013871            2 LLLLTCLR--VGLIIQTFQKSSTPQEKNVILWKTETG---------EAVYQLFQKNMTKTTWPSIRFSSD--EAVACRM-   67 (434)
Q Consensus         2 V~~l~fSP--~g~~L~t~~~~~~~~d~~v~iWd~~~g---------~~~~~~~~~~~~~~~~~~~~~S~d--~~~la~~-   67 (434)
                      |.+|+|+|  ||++|++++     .|+.|+|||+.++         +.+..+..+   ...+.+++|+|+  +.+|+++ 
T Consensus        60 v~~~~~~~~~d~~~l~s~~-----~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~  131 (351)
T 3f3f_A           60 IVAIDWASPEYGRIIASAS-----YDKTVKLWEEDPDQEECSGRRWNKLCTLNDS---KGSLYSVKFAPAHLGLKLACLG  131 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEE-----TTSCEEEEEECTTSCTTSSCSEEEEEEECCC---SSCEEEEEECCGGGCSEEEEEE
T ss_pred             EEEEEEcCCCCCCEEEEEc-----CCCeEEEEecCCCcccccccCcceeeeeccc---CCceeEEEEcCCCCCcEEEEec
Confidence            78999999  699999999     8999999999887         445565543   366779999999  9988887 


Q ss_pred             cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871           68 ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        68 ~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      .++.|++||+..........+.. .+..+.+.+                                     ..+...+..+
T Consensus       132 ~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------------~~~~~~~~~~  173 (351)
T 3f3f_A          132 NDGILRLYDALEPSDLRSWTLTS-EMKVLSIPP-------------------------------------ANHLQSDFCL  173 (351)
T ss_dssp             TTCEEEEEECSSTTCTTCCEEEE-EEESCSCCC-------------------------------------SSCSCCCEEE
T ss_pred             CCCcEEEecCCChHHhccccccc-ccccccccc-------------------------------------CCcccceeEE
Confidence            46899999987754322111100 000000000                                     0122345577


Q ss_pred             EECCC---CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCC----CEEEEEEccCCC
Q 013871          148 NWNRG---STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSG----SEFAVVYGFMPA  219 (434)
Q Consensus       148 ~ws~~---G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg----~~~av~~g~~~~  219 (434)
                      .|+|+   +..+++..   .+...        ++.....+.......+ .+.++|.+++|+|++    +.|+  ++..|+
T Consensus       174 ~~~p~~~~~~~l~~~~---~~~~~--------~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~--s~~~dg  240 (351)
T 3f3f_A          174 SWCPSRFSPEKLAVSA---LEQAI--------IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA--TGCKDG  240 (351)
T ss_dssp             EECCCSSSCCEEEEEE---TTEEE--------EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE--EEETTS
T ss_pred             EeccCCCCCcEEEEec---CCCcE--------EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE--EEcCCC
Confidence            88886   66554432   11111        1111111111112222 247899999999998    4555  578899


Q ss_pred             eEEEEeccc-----------------------------------------------ceeEEe--CCcCeeEEEECCCCCe
Q 013871          220 SATIFNKKC-----------------------------------------------RPILEL--GSGPYNTVRWNPKGKF  250 (434)
Q Consensus       220 ~v~l~d~~~-----------------------------------------------~~~~~~--~~~~~~~i~~SP~g~~  250 (434)
                      .|++||++.                                               ..+..+  |...+++++|+|+|++
T Consensus       241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  320 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI  320 (351)
T ss_dssp             CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred             eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence            999999864                                               233334  6789999999999999


Q ss_pred             EEEEecCCCCCeEEEEEccCCEE
Q 013871          251 LCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      |++++   .+|.|+|||+.+++.
T Consensus       321 l~s~~---~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          321 LSSAG---DDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEE---TTSCEEEEEECTTSC
T ss_pred             EEEec---CCCcEEEEecCcCcc
Confidence            99999   667999999997743

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.84  E-value=3.2e-19  Score=173.06  Aligned_cols=291  Identities=10%  Similarity=0.003  Sum_probs=170.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~   80 (434)
                      +..++|||||++|+.....  ..+..|.+||+.+++... +....  ......+.|||||++|++... +.|.+|++...
T Consensus        38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~-l~~~~--~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~  112 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQ-LTEGK--GDNTFGGFISTDERAFFYVKNELNLMKVDLETL  112 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEE-CCCSS--CBCTTTCEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred             eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEE-eecCC--CCccccceECCCCCEEEEEEcCCcEEEEECCCC
Confidence            5678899999999887632  123579999998887543 32221  122324789999999988754 58999998764


Q ss_pred             CCceeeeeecCCeeE-------------------EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871           81 PKGILYRLRVPGVAA-------------------FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~-------------------~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      ........+......                   +.|+|++ ..+++...........|.+|++..   ++. .......
T Consensus       113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~---g~~-~~~~~~~  187 (396)
T 3c5m_A          113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIET---GEL-EVIHQDT  187 (396)
T ss_dssp             CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTT---CCE-EEEEEES
T ss_pred             CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCC---CcE-EeeccCC
Confidence            421111111111111                   1233432 111110000013445788888865   333 2233344


Q ss_pred             cceeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-CCCeEEEEECcCCCEEEEEEccC-C
Q 013871          142 CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EGPVHDVQWSYSGSEFAVVYGFM-P  218 (434)
Q Consensus       142 ~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-~~~i~~v~wspdg~~~av~~g~~-~  218 (434)
                      .....+.|+| +|..|+++...   ....   ....|+.++..+.....+.... ...+..++|+|||+.+++++... .
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~---~~~~---~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEG---PHDL---VDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ  261 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECS---CSSS---CSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred             cccccceECCCCCCEEEEEecC---CCCC---CCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence            5567889999 88887776421   1100   0124777776554322222111 22477899999999888653321 1


Q ss_pred             --CeEEEEecccceeEEeC-CcCeeEEEECC-CCCeEEEEecC-------------CCCCeEEEEEccCCEEEEEeeCCC
Q 013871          219 --ASATIFNKKCRPILELG-SGPYNTVRWNP-KGKFLCLAGFG-------------NLPGDMAFWDYVDGKQLGTTRAEC  281 (434)
Q Consensus       219 --~~v~l~d~~~~~~~~~~-~~~~~~i~~SP-~g~~l~~~~~~-------------~~~g~i~iwd~~~~~~i~~~~~~~  281 (434)
                        ..|.+||+.......+. ..... +.|+| ||++|++++.+             ..++.|++||+.+++.........
T Consensus       262 ~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  340 (396)
T 3c5m_A          262 TDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHST  340 (396)
T ss_dssp             CCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCC
T ss_pred             ccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCC
Confidence              24999999754433331 11234 89999 99988876532             123689999998875433322222


Q ss_pred             ------------ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          282 ------------SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       282 ------------~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                                  ...+.|+|||++|++++..     ++...||.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~-----~~~~~l~~~  380 (396)
T 3c5m_A          341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDF-----EGVPAIYIA  380 (396)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECT-----TSSCEEEEE
T ss_pred             ccccccccccCCCCCceEccCCCeEEEEecC-----CCCceEEEE
Confidence                        3458999999999988863     455556554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=6.7e-18  Score=160.67  Aligned_cols=276  Identities=10%  Similarity=0.059  Sum_probs=172.5

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      +.++|+++++++++.+     .++.|.+||+.+++.+..+.....  .....++|+||+++++..  .++.|.+||+.+.
T Consensus         3 ~g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             -CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSC--CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCC--CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence            3578999999999988     789999999999998888765421  134589999999866544  3579999998764


Q ss_pred             CCceeeeeecC--------CeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           81 PKGILYRLRVP--------GVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        81 ~~~~~~~~~~~--------~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ..  ...+...        .+..++|+|+ +..+++....       .....+.|.+|++.+......+.... ......
T Consensus        76 ~~--~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~  151 (349)
T 1jmx_B           76 KN--TFHANLSSVPGEVGRSMYSFAISPD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY  151 (349)
T ss_dssp             EE--EEEEESCCSTTEEEECSSCEEECTT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred             cE--EEEEEcccccccccccccceEECCC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence            32  2233322        2678999999 4455443211       00113689999987621111122222 222456


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCC-----------------------CeEEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEG-----------------------PVHDV  201 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~-----------------------~i~~v  201 (434)
                      .+.|+|+|+ +++. +.             .++.++..... ...++....+                       ....+
T Consensus       152 ~~~~s~dg~-l~~~-~~-------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (349)
T 1jmx_B          152 LMRAADDGS-LYVA-GP-------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI  216 (349)
T ss_dssp             CEEECTTSC-EEEE-SS-------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE
T ss_pred             ceeECCCCc-EEEc-cC-------------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeee
Confidence            788999999 5442 11             14445443321 1112211100                       23456


Q ss_pred             EECcCCCEE---------EEEEccCCCeEEEEecccceeEEeCCcCeeEEEECC-CCCeEEEEecCCCCCeEEEEEccCC
Q 013871          202 QWSYSGSEF---------AVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       202 ~wspdg~~~---------av~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP-~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++++++...         .+......+++.+++...      .......++|+| +|++++++     ++.|.+||+.++
T Consensus       217 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~  285 (349)
T 1jmx_B          217 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQR  285 (349)
T ss_dssp             EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTT
T ss_pred             eecCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE-----cCeEEEEECccC
Confidence            677655221         111223334455444421      345677899999 99999887     258999999999


Q ss_pred             EEEEEeeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871          272 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       272 ~~i~~~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~  321 (434)
                      +.+..+.. +.+..++|+|||++|++++.      ++.|++||.. ++.+..
T Consensus       286 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          286 KLIKAANLDHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             EEEEEEECSSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEE
T ss_pred             eEEEEEcCCCCccceEECCCCCEEEEecC------CCeEEEEeccccceeee
Confidence            88877754 35667999999999998766      8999999995 444443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=5.7e-19  Score=185.65  Aligned_cols=296  Identities=10%  Similarity=-0.015  Sum_probs=180.7

Q ss_pred             cceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.+++|||||++|++.+...+    ..++.|+|||+.+|+.+......    ..+..++|||||++||++.+++|++|++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC----cccccceECCCCCEEEEEECCeEEEEeC
Confidence            678999999999998773110    12689999999998763111111    2344799999999999999999999998


Q ss_pred             CCCCCceee-eeec-----------------CCeeEEEEeCCCCCeEEEEecCCC-------------------------
Q 013871           78 TDFPKGILY-RLRV-----------------PGVAAFEVSKAPGSHVAVFVPESK-------------------------  114 (434)
Q Consensus        78 ~~~~~~~~~-~~~~-----------------~~v~~~~~sp~~~~~ia~~~~~~~-------------------------  114 (434)
                      ......... ..+.                 .....+.|||+ +..|++...+..                         
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence            764321111 0000                 11247999999 566665533211                         


Q ss_pred             ----CCCceEEEEEcCCCCCCCce--ee------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEe-
Q 013871          115 ----GSPASVQIYACGKDLQSQPL--AR------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLT-  181 (434)
Q Consensus       115 ----~~~~~v~i~~~~~~~~~~~i--~~------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~-  181 (434)
                          .....|.+|++.+   +..+  ..      ...+......+.|+|||+ +++......+       +...|+.++ 
T Consensus       217 ~g~~~~~~~l~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~-------~~~~l~~~d~  285 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTY---PAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQ-------NVSVLSICDF  285 (719)
T ss_dssp             TTSCCCEEEEEEEESSC---HHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-EEEEEEESST-------TEEEEEEEEE
T ss_pred             CCCCCCeeEEEEEECCC---CCccceeEccCCccCCCCcceEEEeEEeCCCe-EEEEEecccc-------CeEEEEEEcc
Confidence                1223788899876   3321  01      112344567899999975 4443322111       123467777 


Q ss_pred             ---eCCcceeeee----cCCCCCeE-----EEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeC--CcCeeEEEEC
Q 013871          182 ---TDGTHEGLVP----LRKEGPVH-----DVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELG--SGPYNTVRWN  245 (434)
Q Consensus       182 ---~~~~~~~~v~----l~~~~~i~-----~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~--~~~~~~i~~S  245 (434)
                         ..++....+.    ..+.+.+.     .++|+|||+.++++....++  .|.+||+.+.....+.  ...+..+.++
T Consensus       286 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~  365 (719)
T 1z68_A          286 REDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV  365 (719)
T ss_dssp             CSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE
T ss_pred             cCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE
Confidence               5444222221    12345555     78999999988875555455  6777888765555553  3446677777


Q ss_pred             CCCCeEEEEecC--CCCCeEEEEEccC--CE-EEEEeeC----C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          246 PKGKFLCLAGFG--NLPGDMAFWDYVD--GK-QLGTTRA----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       246 P~g~~l~~~~~~--~~~g~i~iwd~~~--~~-~i~~~~~----~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                       +|+.|+..+.+  ..++.+.+|.+..  +. ....+..    +  ....+.|||||++|+.....+.   ...+.+|+.
T Consensus       366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~---~p~~~l~d~  441 (719)
T 1z68_A          366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG---IPISTLHDG  441 (719)
T ss_dssp             -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS---SCEEEEECS
T ss_pred             -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC---CCeEEEEEC
Confidence             88888877754  2246778887653  31 1222221    2  4456899999999887655432   135777877


Q ss_pred             -cCc
Q 013871          315 -NGS  317 (434)
Q Consensus       315 -~g~  317 (434)
                       +|+
T Consensus       442 ~~g~  445 (719)
T 1z68_A          442 RTDQ  445 (719)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence             444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=4.8e-17  Score=155.38  Aligned_cols=264  Identities=9%  Similarity=0.062  Sum_probs=160.8

Q ss_pred             CCCcEEEEEc--CCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEec---CCeEEEEeCCCCCCceeee--eecCCeeE
Q 013871           24 QEKNVILWKT--ETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMA---TNEIQFFDTTDFPKGILYR--LRVPGVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~--~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~---~~~i~v~~~~~~~~~~~~~--~~~~~v~~   95 (434)
                      .++.|.+|++  .+|+... ......   .....++|||||++++...   ++.|.+|++..........  .+...+..
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            4567777765  4565432 222211   3334689999999444443   3699999986533211112  23556888


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec---------ccceeEEEECCCCCeEEEEEEecccc
Q 013871           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF---------RCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~---------~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ++|+|++ ..+.+..    ...+.|.+|++........+......         ......+.|+|+|+ +++. .. .+ 
T Consensus        91 ~a~spdg-~~l~~~~----~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~-~~-  161 (347)
T 3hfq_A           91 VAVDEAR-QLVYSAN----YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL-GS-  161 (347)
T ss_dssp             EEEETTT-TEEEEEE----TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET-TT-
T ss_pred             EEECCCC-CEEEEEe----CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC-CC-
Confidence            9999994 4443322    23468999999642101222222111         11255699999999 5442 21 11 


Q ss_pred             cCceeecceeEEEEeeC--Cccee--eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---eEEeC--
Q 013871          167 TNQSYYGESKLNYLTTD--GTHEG--LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILELG--  235 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~--~~~~~--~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---~~~~~--  235 (434)
                              ..++.+++.  +....  .+..........++|+|||+++++. +..++.+.+|++..  ..   +..+.  
T Consensus       162 --------~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~~~  232 (347)
T 3hfq_A          162 --------DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA-GELSSQIASLKYDTQTGAFTQLGIVKTI  232 (347)
T ss_dssp             --------TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred             --------CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE-eCCCCEEEEEEecCCCCceEEeeeeeec
Confidence                    123444433  21111  1122233467789999999987764 56678999998752  22   22221  


Q ss_pred             C------cCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCcee
Q 013871          236 S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       236 ~------~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      .      .....++|||||++|+++..+  ++.|.+||+.   ..+.+..+..+  .+..++|+|||++|+++...    
T Consensus       233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----  306 (347)
T 3hfq_A          233 PADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----  306 (347)
T ss_dssp             CTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----
T ss_pred             CCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----
Confidence            1      346789999999988766543  3699999987   33566655543  56679999999999999873    


Q ss_pred             eCCcEEEEeec
Q 013871          305 IDNGIKIFHHN  315 (434)
Q Consensus       305 ~D~~i~iw~~~  315 (434)
                       ++.|.||+++
T Consensus       307 -~~~v~v~~~d  316 (347)
T 3hfq_A          307 -TDNATLYARD  316 (347)
T ss_dssp             -TTEEEEEEEC
T ss_pred             -CCcEEEEEEe
Confidence             5899999763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=2.2e-17  Score=157.43  Aligned_cols=261  Identities=6%  Similarity=-0.031  Sum_probs=181.6

Q ss_pred             CeeeecCCCcEEEEec--------CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013871           53 PSIRFSSDEAVACRMA--------TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        53 ~~~~~S~d~~~la~~~--------~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ..++|+||+++++...        ++.|.+||..+......... ...+..+.|+|++. .+.+..    ...+.|.+|+
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~v~~----~~~~~v~~~d  117 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQ-TLWFGN----TVNSAVTAID  117 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTT-EEEEEE----TTTTEEEEEE
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCC-EEEEEe----cCCCEEEEEe
Confidence            3789999999887765        45899999987553222222 23577899999854 333322    2345899999


Q ss_pred             cCCCCCCCceeeeeecccc---------eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-C
Q 013871          125 CGKDLQSQPLARRSFFRCS---------TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K  194 (434)
Q Consensus       125 ~~~~~~~~~i~~~~~~~~~---------~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~  194 (434)
                      +.+   ++.+.........         ...+.|+|+|+.+++....          ....++.++.... .....+. .
T Consensus       118 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~~i~~~d~~~~-~~~~~~~~~  183 (353)
T 3vgz_A          118 AKT---GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG----------KESVIWVVDGGNI-KLKTAIQNT  183 (353)
T ss_dssp             TTT---CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------SSCEEEEEETTTT-EEEEEECCC
T ss_pred             CCC---CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC----------CCceEEEEcCCCC-ceEEEecCC
Confidence            977   5665555543221         4678999999987664311          1123666666544 2222333 2


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ...++.++|+|+|+.+++  +..++.+.+||+....+ ..+      +......++|+|+|++|++++.+  ++.|.+||
T Consensus       184 ~~~~~~~~~s~dg~~l~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d  259 (353)
T 3vgz_A          184 GKMSTGLALDSEGKRLYT--TNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVD  259 (353)
T ss_dssp             CTTCCCCEEETTTTEEEE--ECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEE
T ss_pred             CCccceEEECCCCCEEEE--EcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEE
Confidence            345789999999999886  34578999999975443 332      23346779999999988887744  37999999


Q ss_pred             ccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeec-ccceeeEEEcCCCCCCCC
Q 013871          268 YVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF-DKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       268 ~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~-~~~~~~~w~p~~~~~~~~  342 (434)
                      ..+++.+..+..+....++|+|||++++++...     ++.|.+||.. ++.+..... .....+.|.|++..+|..
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          260 TRNGNILAKVAAPESLAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             TTTCCEEEEEECSSCCCEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCceEEECCCCCEEEEEECC-----CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEE
Confidence            999988888776666679999999988777743     8999999995 555554433 357889999998877664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.82  E-value=1.3e-17  Score=157.92  Aligned_cols=239  Identities=9%  Similarity=0.035  Sum_probs=156.7

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE-EEEEeecCcCCCCCCeeeecCCCcEEEEecCC----eEEEEeCC
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA-VYQLFQKNMTKTTWPSIRFSSDEAVACRMATN----EIQFFDTT   78 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~-~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~----~i~v~~~~   78 (434)
                      +++|||||++|++.+.    .++.|.+||+.+++. +..+....   ....+++|+||+++++....+    .|.+|+..
T Consensus        44 ~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQ---SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL  116 (331)
T ss_dssp             EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECS---SCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred             eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCC---CCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence            7899999998887772    367999999999987 66655542   334238999999999865443    89999997


Q ss_pred             CCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCce-EEEEEcCCCCCCCceee----eeecccceeEEEECCC
Q 013871           79 DFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPAS-VQIYACGKDLQSQPLAR----RSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~-v~i~~~~~~~~~~~i~~----~~~~~~~~~~~~ws~~  152 (434)
                      ....  ...+. ......++|+|++...++. ..    .... +.+|++..   ...+..    ..........+.|+|+
T Consensus       117 ~~~~--~~~~~~~~~~~~~~~spdg~~l~~~-~~----~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~spd  186 (331)
T 3u4y_A          117 KNKF--ISTIPIPYDAVGIAISPNGNGLILI-DR----SSANTVRRFKIDA---DGVLFDTGQEFISGGTRPFNITFTPD  186 (331)
T ss_dssp             TTEE--EEEEECCTTEEEEEECTTSSCEEEE-EE----TTTTEEEEEEECT---TCCEEEEEEEEECSSSSEEEEEECTT
T ss_pred             CCCe--EEEEECCCCccceEECCCCCEEEEE-ec----CCCceEEEEEECC---CCcEeecCCccccCCCCccceEECCC
Confidence            7443  22232 3457899999995443332 11    1235 89999875   222211    1122344678999999


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcce--eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP  230 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~--~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~  230 (434)
                      |+++++....           ...++.++......  ....+.....+..++|+|||+++++. ...++.|.+||++...
T Consensus       187 g~~l~v~~~~-----------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          187 GNFAFVANLI-----------GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVFNFNQLSGT  254 (331)
T ss_dssp             SSEEEEEETT-----------TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEEEEETTTTE
T ss_pred             CCEEEEEeCC-----------CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEEEEECCCCc
Confidence            9987664311           11245555443321  02223335677899999999988764 4456789999997544


Q ss_pred             eE---Ee------CCc---CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          231 IL---EL------GSG---PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       231 ~~---~~------~~~---~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      +.   .+      +..   ..+.++|+|||++|++++.++  +.|.+||+.+...
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~d~~~~~~  307 (331)
T 3u4y_A          255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS--RELKVFTISGKVV  307 (331)
T ss_dssp             EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT--TEEEEEETTSCEE
T ss_pred             eeeecccccccccCCCCcccccceEECCCCCEEEEecCCC--CcEEEEEecCCcc
Confidence            41   11      111   125689999999988877543  7999999987543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.81  E-value=2e-17  Score=163.41  Aligned_cols=247  Identities=10%  Similarity=0.153  Sum_probs=176.1

Q ss_pred             CCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCC
Q 013871           50 TTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKD  128 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~  128 (434)
                      ..+.+++  .|+++++++ .++.|++||..+.........+...|.+++|  + +..+++     ++.++.|++|++.+ 
T Consensus       134 ~~v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-----g~~dg~i~vwd~~~-  202 (435)
T 1p22_A          134 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--D-ERVIIT-----GSSDSTVRVWDVNT-  202 (435)
T ss_dssp             CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--C-SSEEEE-----EETTSCEEEEESSS-
T ss_pred             CcEEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--C-CCEEEE-----EcCCCeEEEEECCC-
Confidence            4454544  489999888 4679999999876554444556667888887  3 445543     34567999999988 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---eeecCCCCCeEEEEECc
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~~~~~i~~v~wsp  205 (434)
                        ++.+.....+...+..+.|++  ..++. +  ..|....       +|  +.......   .....+.+.|.+++|  
T Consensus       203 --~~~~~~~~~h~~~v~~l~~~~--~~l~s-~--s~dg~i~-------vw--d~~~~~~~~~~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          203 --GEMLNTLIHHCEAVLHLRFNN--GMMVT-C--SKDRSIA-------VW--DMASPTDITLRRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             --CCEEEEECCCCSCEEEEECCT--TEEEE-E--ETTSCEE-------EE--ECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred             --CcEEEEEcCCCCcEEEEEEcC--CEEEE-e--eCCCcEE-------EE--eCCCCCCceeeeEecCCCCcEEEEEe--
Confidence              778888888888899999975  34332 2  2343333       33  33222111   233445789999999  


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      +++.++  +|..++.|.+||++. ..+..+  |...+.++.|  ++++|++++   .+|.|++||+.+++.+..+.+|  
T Consensus       265 ~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~h~~  337 (435)
T 1p22_A          265 DDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE  337 (435)
T ss_dssp             ETTEEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred             CCCEEE--EEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe---CCCeEEEEECCCCCEEEEEeCCcC
Confidence            677777  577799999999964 444444  6788999998  478999998   5679999999999999998877  


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      .+..++|  +|.+|++++.      |+.|+|||+...          ++..  .+...+..+.|  ++..++..
T Consensus       338 ~v~~~~~--~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  401 (435)
T 1p22_A          338 LVRCIRF--DNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS  401 (435)
T ss_dssp             CEEEEEC--CSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC
T ss_pred             cEEEEEe--cCCEEEEEeC------CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE
Confidence            3445666  8999999999      999999998432          3332  24467888988  44555554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=3.7e-18  Score=165.47  Aligned_cols=302  Identities=11%  Similarity=-0.023  Sum_probs=179.0

Q ss_pred             EEEcCCCcEEEEEeecCcC--CCCCCeeeecCCCcEEEEecC--C--eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871           30 LWKTETGEAVYQLFQKNMT--KTTWPSIRFSSDEAVACRMAT--N--EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~~--~~~~~~~~~S~d~~~la~~~~--~--~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      .+|..+|..+..+..+...  ..-+..++|||||++|++..+  +  .|.+|++...........+...+..+.|||+ +
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd-g   92 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD-D   92 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT-S
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC-C
Confidence            3477888888877654310  011223789999999998854  3  5888888764321111111222335789999 5


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE--EEECCCCCeEEEEEEecccccC-c---------ee
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ--LNWNRGSTGLLAVAQSDVDKTN-Q---------SY  171 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~--~~ws~~G~~l~~~~~~~~d~~~-~---------~~  171 (434)
                      ..|++...     ...+.+|++.+   ++..............  ..++++|+.++.......+... .         ..
T Consensus        93 ~~l~~~~~-----~~~l~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           93 DALFYVKD-----GRNLMRVDLAT---LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SEEEEEET-----TTEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             CEEEEEeC-----CCeEEEEECCC---CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            66655432     25789999877   4444333333322222  3349999987754332211100 0         00


Q ss_pred             ecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccC----CCeEEEEecccceeEEeCC----cCeeEE
Q 013871          172 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM----PASATIFNKKCRPILELGS----GPYNTV  242 (434)
Q Consensus       172 ~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~----~~~v~l~d~~~~~~~~~~~----~~~~~i  242 (434)
                      .....|+.+++.++....+. .....+..++||| ||+.++++....    ...+.++|..+.....+..    ..+..+
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE  243 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred             CCcceEEEEECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence            12246888887765333332 3356789999999 999998765432    3478888987666555532    246778


Q ss_pred             EECCCCCeEEEEecCCC--CCeEEEEEccCCEE--EEEeeCC-----CceEEEECCCCCEEEEEEcCC---ceeeCCcEE
Q 013871          243 RWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQ--LGTTRAE-----CSVTSEWSPDGRYFMTATTAP---RLQIDNGIK  310 (434)
Q Consensus       243 ~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~--i~~~~~~-----~~~~~~wspdg~~l~tas~~p---rl~~D~~i~  310 (434)
                      .|||||+.|+..+..+.  ++.|++||+.+++.  +..+...     ....+.|||||+.|+......   ...-+..|+
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            99999998877654322  23499999998863  3333331     011247999999988764210   001156899


Q ss_pred             EEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013871          311 IFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       311 iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~  341 (434)
                      +|+..+..+.....  .           ....+.|.|++..++.
T Consensus       324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~  367 (388)
T 3pe7_A          324 VFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF  367 (388)
T ss_dssp             EEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             EEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence            99998765433321  2           3677899999876654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=2.6e-17  Score=155.63  Aligned_cols=252  Identities=9%  Similarity=0.061  Sum_probs=165.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-----------   68 (434)
                      +..++|||+|++|+....    .++.|.+||+.+++.+..+.....  +......++|+|||++++.+.           
T Consensus        36 ~~~~~~s~dg~~l~v~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVN----KSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             ccceEEcCCCCEEEEEeC----CCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            567999999998766551    467899999999998877764320  011445899999999888773           


Q ss_pred             --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                        ++.|.+||+.....  ...+. ...+..+.|+|++.. +.+.       .+.|.+|++.+   ++.+........ ..
T Consensus       112 ~~~~~i~v~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~-l~~~-------~~~i~~~d~~~---~~~~~~~~~~~~-~~  177 (337)
T 1pby_B          112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSK-LYGL-------GRDLHVMDPEA---GTLVEDKPIQSW-EA  177 (337)
T ss_dssp             ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSC-EEEE-------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred             ccCceEEEEECCCCcE--EEEEeCCCCcceeEECCCCCE-EEEe-------CCeEEEEECCC---CcEeeeeecccc-CC
Confidence              58999999976432  22232 335778899999543 3332       25799999977   555444433221 12


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeec--------------ceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYG--------------ESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g--------------~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~  210 (434)
                      .+.|+|+|..+++...  .+......|.              ...++.++........+.+. ....+..++|+|||+++
T Consensus       178 ~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  255 (337)
T 1pby_B          178 ETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA  255 (337)
T ss_dssp             TTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred             CceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEE
Confidence            4478999987654211  1110000000              01356666655432222222 23567889999999998


Q ss_pred             EEEEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871          211 AVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ++.    ++.|.+||++... +..+ ....+.+++|+|+|++|++++   .++.|.+||+.+++.+..+..+
T Consensus       256 ~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          256 FGA----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEECG
T ss_pred             EEe----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc---CCCcEEEEECcCCcEEEEEEcC
Confidence            864    4799999997543 3333 345678999999999998886   3579999999999888777654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=2.3e-16  Score=150.61  Aligned_cols=247  Identities=9%  Similarity=0.081  Sum_probs=150.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~   77 (434)
                      +..|+|||||+ |++.+..  ..++.|.+|++.+++.  +..+....   .....++|+|||++|+++.  ++.|.+|++
T Consensus        42 p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~---~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           42 PTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPG---TPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             CCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEES---CCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCC---CCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            35699999999 6555411  1357899999987763  33333222   4445899999999887764  579999998


Q ss_pred             CCCCCc-eeeeeec-----------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--eeeec-cc
Q 013871           78 TDFPKG-ILYRLRV-----------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RRSFF-RC  142 (434)
Q Consensus        78 ~~~~~~-~~~~~~~-----------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~~~~-~~  142 (434)
                      ...... ....+..           ..+..++|+|++. .++. .    ...+.|.+|++...  +....  ..... ..
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~----~~~~~v~~~~~~~~--g~~~~~~~~~~~~g~  187 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-D----LGSDKVYVYNVSDA--GQLSEQSVLTMEAGF  187 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-E----TTTTEEEEEEECTT--SCEEEEEEEECCTTC
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-e----CCCCEEEEEEECCC--CcEEEeeeEEcCCCC
Confidence            642221 1122222           1367899999965 3321 1    22358999999731  22211  11121 22


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-e--eee-cCC----CCCeEEEEECcCCCEEEEEE
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-G--LVP-LRK----EGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~--~v~-l~~----~~~i~~v~wspdg~~~av~~  214 (434)
                      ....+.|+|+|++|++...  .+.       ...+|.++...... .  .+. +..    ...+..++|+|||+++++. 
T Consensus       188 ~p~~~~~spdg~~l~v~~~--~~~-------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~-  257 (347)
T 3hfq_A          188 GPRHLVFSPDGQYAFLAGE--LSS-------QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVS-  257 (347)
T ss_dssp             CEEEEEECTTSSEEEEEET--TTT-------EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEE-
T ss_pred             CCceEEECCCCCEEEEEeC--CCC-------EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEE-
Confidence            4557899999998766421  111       11233333211111 1  111 111    1357899999999988763 


Q ss_pred             ccCCCeEEEEeccc----ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEE
Q 013871          215 GFMPASATIFNKKC----RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQL  274 (434)
Q Consensus       215 g~~~~~v~l~d~~~----~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i  274 (434)
                      +..++.|.+||+..    ..+..+  +......++|+|||++|++++.++  +.|.+|  |.+++++.
T Consensus       258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT--DNATLYARDLTSGKLS  323 (347)
T ss_dssp             EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEE
T ss_pred             eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEeCCCCeEE
Confidence            55578999999852    223333  344578999999999999988643  689999  55566544

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.80  E-value=5.5e-17  Score=153.79  Aligned_cols=260  Identities=8%  Similarity=0.041  Sum_probs=162.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcE--EEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~   75 (434)
                      +.+++|||+|++|++.+.    .++.|.+|++.  +++.  +..+...    .....++|+||+++++.+.  ++.|.+|
T Consensus        40 ~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~i~~~  111 (343)
T 1ri6_A           40 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALP----GSLTHISTDHQGQFVFVGSYNAGNVSVT  111 (343)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECS----SCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccC----CCCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence            568999999999998882    23899999997  6653  3444332    2445899999999876653  5789999


Q ss_pred             eCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee-----eeee-cccceeEE
Q 013871           76 DTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA-----RRSF-FRCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~-----~~~~-~~~~~~~~  147 (434)
                      ++.+...... ..+. ...+..++|+|++ ..+.+..    ...+.|.+|++...   ..+.     .... .......+
T Consensus       112 d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~----~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  183 (343)
T 1ri6_A          112 RLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPA----LKQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHM  183 (343)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEE----GGGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEE
T ss_pred             ECCCCccccccccccCCCCceEEEECCCC-CEEEEec----CCCCEEEEEEecCC---CceeeecccccccCCCCCcceE
Confidence            9852111111 1121 3357889999984 4443322    13468999999752   2222     1222 12355679


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--cce---eeee-cCC----CCCeEEEEECcCCCEEEEEEccC
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--THE---GLVP-LRK----EGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~~~---~~v~-l~~----~~~i~~v~wspdg~~~av~~g~~  217 (434)
                      .|+|+|+++++...  .+.         .+..++...  ...   ..+. +..    ...+..++|+|+|+++++ ++..
T Consensus       184 ~~~pdg~~l~~~~~--~~~---------~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v-~~~~  251 (343)
T 1ri6_A          184 VFHPNEQYAYCVNE--LNS---------SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYA-CDRT  251 (343)
T ss_dssp             EECTTSSEEEEEET--TTT---------EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEE-EETT
T ss_pred             EECCCCCEEEEEeC--CCC---------EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEE-EecC
Confidence            99999998766421  111         133333321  110   0111 111    235668999999998876 4556


Q ss_pred             CCeEEEEecc--c---ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cCC--EEEEEeeC-CCceEEE
Q 013871          218 PASATIFNKK--C---RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG--KQLGTTRA-ECSVTSE  286 (434)
Q Consensus       218 ~~~v~l~d~~--~---~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~~--~~i~~~~~-~~~~~~~  286 (434)
                      ++.+.+||++  .   ..+..+ ....+..++|+|+|++|++++.+  ++.|.+|++  +++  +.+..+.. ..+..++
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--CCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence            8899999986  2   223233 23447899999999999888743  379999954  466  34444443 3566677


Q ss_pred             ECCCC
Q 013871          287 WSPDG  291 (434)
Q Consensus       287 wspdg  291 (434)
                      |.|+-
T Consensus       330 ~~~~~  334 (343)
T 1ri6_A          330 VNAHE  334 (343)
T ss_dssp             EEEEC
T ss_pred             EEccc
Confidence            77653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.79  E-value=8.8e-18  Score=177.67  Aligned_cols=227  Identities=15%  Similarity=0.211  Sum_probs=165.7

Q ss_pred             eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC--CCeEEEEEEec
Q 013871           86 YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG--STGLLAVAQSD  163 (434)
Q Consensus        86 ~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~--G~~l~~~~~~~  163 (434)
                      ...|...|.+++|+|++ ..+++     ++.++.|++|++.... ...+.....|...+..+.|+++  |+.|+...   
T Consensus         5 l~gH~~~V~~l~~s~dg-~~lat-----g~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---   74 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYG-KRLAT-----CSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS---   74 (753)
T ss_dssp             ---CCCCEEEECCCSSS-CCEEE-----EETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCSEEEEEE---
T ss_pred             cccCcceeEEEEECCCC-CeEEE-----EECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCCEEEEEe---
Confidence            34566789999999994 44543     2456899999997421 4566677778889999999988  87765432   


Q ss_pred             ccccCceeecceeEEEEeeCCcc--eeeeecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEecccc---eeE--Ee
Q 013871          164 VDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKKCR---PIL--EL  234 (434)
Q Consensus       164 ~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~~~~~i~~v~wspd--g~~~av~~g~~~~~v~l~d~~~~---~~~--~~  234 (434)
                      .|...+       +|.+  ....  .......+.++|.+++|+|+  ++.|+  +|..++.|.+||++..   ...  ..
T Consensus        75 ~Dg~I~-------vwd~--~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~--sgs~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           75 YDGKVL-------IWKE--ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL--VASSDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             TTSCEE-------EEEE--ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE--EEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred             CCCeEE-------EEEC--CCCcccccccccCCCCCeEEEEECCCCCCCEEE--EEeCCCcEEEEEeecCCCcceeEeec
Confidence            344333       3333  2321  11222335789999999999  88888  5778999999999643   222  33


Q ss_pred             CCcCeeEEEECC-------------CCCeEEEEecCCCCCeEEEEEccCC----EEEEEeeCC--CceEEEECCC---CC
Q 013871          235 GSGPYNTVRWNP-------------KGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD---GR  292 (434)
Q Consensus       235 ~~~~~~~i~~SP-------------~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~~~--~~~~~~wspd---g~  292 (434)
                      |...+.++.|+|             +|++|++++   .+|.|++||+.++    ..+..+.+|  .+..++|+|+   |+
T Consensus       144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG---ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             CSSCEEEEEECCCC---------CGGGCCEEEEE---TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             CCCceEEEEecCcccccccccccCCCCCEEEEEE---CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            788999999999             589999998   5679999999876    566666665  5667999999   99


Q ss_pred             EEEEEEcCCceeeCCcEEEEeecCc------eeee--eecccceeeEEEcCCCCCCCC
Q 013871          293 YFMTATTAPRLQIDNGIKIFHHNGS------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~~g~------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +|++++.      |+.|+||++...      .+..  .+...+..+.|.|++..++..
T Consensus       221 ~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          221 YLASVSQ------DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEEES------SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred             EEEEEec------CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence            9999999      999999999653      2221  244678999999998877764

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.79  E-value=2.8e-18  Score=167.41  Aligned_cols=211  Identities=11%  Similarity=0.023  Sum_probs=127.3

Q ss_pred             cceEEecC--------CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc-EEEEe-cCCe
Q 013871            2 LLLLTCLR--------VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA-VACRM-ATNE   71 (434)
Q Consensus         2 V~~l~fSP--------~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~-~la~~-~~~~   71 (434)
                      |.+|+|||        ||++|++++     .|++|+|||+.++.++..+..+.   ..+.+++|+|++. +|+++ .|++
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~  210 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGN  210 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCE
Confidence            78999998        899999999     89999999998887777666543   5566999999875 67777 5689


Q ss_pred             EEEEeCCCCCCceee-------------------------eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           72 IQFFDTTDFPKGILY-------------------------RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        72 i~v~~~~~~~~~~~~-------------------------~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      |++||+.........                         ..+...+..+.|++..+..++.     ...++.+++|++.
T Consensus       211 v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s-----~s~d~~i~vwd~~  285 (393)
T 4gq1_A          211 IRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA-----MCKSGAWLRWNLF  285 (393)
T ss_dssp             EEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE-----ECTTSEEEEEEC-
T ss_pred             EEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE-----EeCCCCEEEEECc
Confidence            999998653321100                         1122346667776322444443     2455789999986


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      .   .........+......+.+.+++..                        .            ..........|+|.
T Consensus       286 ~---~~~~~~l~~~~~~~~~~~~~~~~~~------------------------~------------~~~~~~~~~~~~~~  326 (393)
T 4gq1_A          286 A---NNDYNEISDSTMKLGPKNLLPNVQG------------------------I------------SLFPSLLGACPHPR  326 (393)
T ss_dssp             ---------------------CCSCSEEE------------------------E------------CSSCCSSCCEECSS
T ss_pred             c---CCCCceEeeecCccccEEEcccccc------------------------c------------cccCcceeEEEccC
Confidence            5   3322222222211112222221110                        0            00112223445554


Q ss_pred             -CCEEEEEEccCCCeEEEEeccc-ceeEE--eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          207 -GSEFAVVYGFMPASATIFNKKC-RPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       207 -g~~~av~~g~~~~~v~l~d~~~-~~~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                       +..|+ ++|..|+.|+|||... ..+..  -+..+|++++|||||++||+++.+    .+.+|.+.
T Consensus       327 ~~~~~~-~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~----Gv~lvrL~  388 (393)
T 4gq1_A          327 YMDYFA-TAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG----SVLLTRLM  388 (393)
T ss_dssp             CTTEEE-EEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS----EEEEEEEG
T ss_pred             CCCEEE-EEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEe
Confidence             44444 4788899999999863 33332  377899999999999999999733    47777653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.77  E-value=2.1e-16  Score=166.86  Aligned_cols=291  Identities=10%  Similarity=0.049  Sum_probs=171.8

Q ss_pred             eEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCC
Q 013871            4 LLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD   79 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~   79 (434)
                      .++|||||++|+..+....    ...+.+.|||+.+|+... +....   ..+..++|||||+.||++.++.|.+|+...
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~---~~~~~~~~SPdG~~la~~~~~~i~~~~~~~  141 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIEPN  141 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCC---TTEEEEEECSSTTCEEEEETTEEEEESSTT
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCC---CcceeeEECCCCCEEEEEECCeEEEEECCC
Confidence            3789999999998772100    112578899999997533 33221   344589999999999999999999999876


Q ss_pred             CCCceeeeeec---------------------CCeeEEEEeCCCCCeEEEEecCCC------------------------
Q 013871           80 FPKGILYRLRV---------------------PGVAAFEVSKAPGSHVAVFVPESK------------------------  114 (434)
Q Consensus        80 ~~~~~~~~~~~---------------------~~v~~~~~sp~~~~~ia~~~~~~~------------------------  114 (434)
                      ...   .++..                     .....+.|||| +..|++...+..                        
T Consensus       142 ~~~---~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpD-g~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          142 LPS---YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             SCC---EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             Cce---EEEcCCCCccceecCcccccccchhcCCCcceEECCC-CCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            432   22211                     11235899999 566665532111                        


Q ss_pred             -------CCCceEEEEEcCC---CCCCCceeeeee------cccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871          115 -------GSPASVQIYACGK---DLQSQPLARRSF------FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus       115 -------~~~~~v~i~~~~~---~~~~~~i~~~~~------~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                             .....+.+|++.+   .. ......+..      +......+.|+|||+.+++.....  .      ....|+
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~--~------~~~~i~  288 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVT-NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI--Q------NYSVMD  288 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSS-CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS--T------TEEEEE
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCC-cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC--C------CEEEEE
Confidence                   1112677888865   21 002222222      344567889999999655433221  1      122466


Q ss_pred             EEeeCCcce---eee-----ecCCCCCe-----EEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEeCC--cCeeE
Q 013871          179 YLTTDGTHE---GLV-----PLRKEGPV-----HDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILELGS--GPYNT  241 (434)
Q Consensus       179 ~l~~~~~~~---~~v-----~l~~~~~i-----~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~~~--~~~~~  241 (434)
                      .+++.++..   +..     .-.+.+.|     .+++|||||+.|++.....++  .|.+||+.+.....+..  ..+..
T Consensus       289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~  368 (740)
T 4a5s_A          289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIG  368 (740)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEE
T ss_pred             EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEE
Confidence            666655420   111     11123333     378999999998843444444  78888988766666633  33444


Q ss_pred             EEECCCCCeEEEEecC--CC--CCeEEEEEccCCEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          242 VRWNPKGKFLCLAGFG--NL--PGDMAFWDYVDGKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       242 i~~SP~g~~l~~~~~~--~~--~g~i~iwd~~~~~~i~~~~~------~~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      +. ++||+.|+..+.+  ..  ...|+..++..++....+..      .....+.|||||++++.....|.   -..+.+
T Consensus       369 ~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~---~p~~~l  444 (740)
T 4a5s_A          369 IE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTL  444 (740)
T ss_dssp             EE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEE
T ss_pred             EE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC---CCEEEE
Confidence            43 3557776666543  22  23555556655443323321      24556999999999988877543   234566


Q ss_pred             Eeec
Q 013871          312 FHHN  315 (434)
Q Consensus       312 w~~~  315 (434)
                      ++..
T Consensus       445 ~~~~  448 (740)
T 4a5s_A          445 HSSV  448 (740)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            6654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.77  E-value=8.9e-18  Score=172.27  Aligned_cols=255  Identities=13%  Similarity=0.025  Sum_probs=161.6

Q ss_pred             CCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceeeeee--c-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEc
Q 013871           51 TWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILYRLR--V-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYAC  125 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~--~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~  125 (434)
                      .+.+++|||||++||+++  +++++||++....   ..++.  . ..+..+.|||+   .+++..... +.....+||.+
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---~~~lt~~~~~~~~~~~~spd---~~l~~~~~~-~g~~~~~l~~~   95 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---TVKLNREPINSVLDPHYGVG---RVILVRDVS-KGAEQHALFKV   95 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---EEECCSSCCSEECEECTTCS---EEEEEEECS-TTSCCEEEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCCC---cEeeecccccccccccCCCC---eEEEEeccC-CCCcceEEEEE
Confidence            344889999999999874  6899999984422   22222  2 36888999987   344433321 12234556555


Q ss_pred             CCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc
Q 013871          126 GKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY  205 (434)
Q Consensus       126 ~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp  205 (434)
                      .....+... ...... ....+.|+|+|+.+++.... .+.        ..||  ++.++....+.- ...  .+++|||
T Consensus        96 ~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~-~~~--------~~l~--d~~~g~~~~l~~-~~~--~~~~~sp  159 (582)
T 3o4h_A           96 NTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGAT-EDR--------VALY--ALDGGGLRELAR-LPG--FGFVSDI  159 (582)
T ss_dssp             ETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEEC-SSC--------EEEE--EEETTEEEEEEE-ESS--CEEEEEE
T ss_pred             eccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecC-CCC--------ceEE--EccCCcEEEeec-CCC--ceEEECC
Confidence            430002222 222222 22356899999987665332 111        1134  333432222221 122  8999999


Q ss_pred             CCCEEEEEEccCC--CeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC--eEEEEEccCCEEEEEeeC
Q 013871          206 SGSEFAVVYGFMP--ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       206 dg~~~av~~g~~~--~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g--~i~iwd~~~~~~i~~~~~  279 (434)
                      ||+.++..+....  ..|++||+.+.....+  +.+.++.++|||||++|+.+.   .+|  .|++||+++++.. .+..
T Consensus       160 DG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~---~~~~~~i~~~d~~~~~~~-~~~~  235 (582)
T 3o4h_A          160 RGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE---TAREARLVTVDPRDGSVE-DLEL  235 (582)
T ss_dssp             ETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE---CSSCEEEEEECTTTCCEE-ECCC
T ss_pred             CCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc---CCCeeEEEEEcCCCCcEE-EccC
Confidence            9999996443211  4799999876555555  456789999999999999655   345  8999999998776 5554


Q ss_pred             C--CceEEE--------ECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871          280 E--CSVTSE--------WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       280 ~--~~~~~~--------wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                      +  .+..+.        |||||..+++++.      |+.++||++ |+++. .....+..+.|+ ++..++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~------~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~  298 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARR------EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTS  298 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEE------TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEc------CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEE
Confidence            4  222355        9999988888888      999999999 87654 233456777888 6554443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.77  E-value=6.6e-17  Score=151.64  Aligned_cols=215  Identities=11%  Similarity=0.031  Sum_probs=128.9

Q ss_pred             cceEEecCC----CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRV----GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~----g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |++|+||||    +++|+..+       ..+.||++.+|+.+.+....  +...+..++++|||+.++            
T Consensus       114 v~sla~spd~~~~~~~l~s~g-------~~~~v~~l~~g~lv~ss~~g--~d~~V~~~~~s~dG~~~~------------  172 (356)
T 2w18_A          114 IRALFCSSDDESEKQVLLKSG-------NIKAVLGLTKRRLVSSSGTL--SDQQVEVMTFAEDGGGKE------------  172 (356)
T ss_dssp             EEEECC------CCEEEEEEE-------EEEEEEEETTTEEEEEESSS--TTCEEEEEEECTTSCEEE------------
T ss_pred             eEEEEECCCccccccEEEeCC-------CeEEEEecCCCcEEEecccC--CCCcEEEEEECCCCceee------------
Confidence            578888888    88888755       44778887777666553211  113444555555555554            


Q ss_pred             CCCCCceeeeeecCCeeEEEEeC--CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc---cceeEEEECCC
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSK--APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR---CSTVQLNWNRG  152 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp--~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~---~~~~~~~ws~~  152 (434)
                             ...++...+..++|||  +.+..++.     ++.+++|+||++.+   ++.+.++..+.   ..++.+.|+|+
T Consensus       173 -------s~~~~~~~v~~l~fs~~~g~~~~LaS-----gS~D~TIkIWDl~T---Gk~l~tL~g~~~~v~~v~~vafSpd  237 (356)
T 2w18_A          173 -------NQFLMPPEETILTFAEVQGMQEALLG-----TTIMNNIVIWNLKT---GQLLKKMHIDDSYQASVCHKAYSEM  237 (356)
T ss_dssp             -------EEEECCCSSCEEEEEEEETSTTEEEE-----EETTSEEEEEETTT---CCEEEEEECCC---CCCEEEEEEET
T ss_pred             -------eeccCCCceeeEEeeccCCCCceEEE-----ecCCCcEEEEECCC---CcEEEEEcCCCcceeeeEEEEECCC
Confidence                   2345556677777777  22455552     45678999999988   77777776432   34556789999


Q ss_pred             CCeEEEEE---------EecccccCceeecceeEEEEeeCCcceeee-----ecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          153 STGLLAVA---------QSDVDKTNQSYYGESKLNYLTTDGTHEGLV-----PLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       153 G~~l~~~~---------~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-----~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      |..++...         +...|.+.+         .++...+....+     +-.+.+.+.+..++  +..++  ++..|
T Consensus       238 G~~lvs~s~~~~~w~laSGs~D~tIk---------lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lA--SgS~D  304 (356)
T 2w18_A          238 GLLFIVLSHPCAKESESLRSPVFQLI---------VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAA--AILTS  304 (356)
T ss_dssp             TEEEEEEC------------CCEEEE---------EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEE--EEETT
T ss_pred             CCEEEEeccCCCcceeeccCCCcEEE---------EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEE--EEcCC
Confidence            98775532         222233332         223322211111     01112223333332  44455  68889


Q ss_pred             CeEEEEeccc-ceeEEe--CCcCee-EEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          219 ASATIFNKKC-RPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~~~--~~~~~~-~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ++|+|||++. +.+.++  |...+. .++|||||++|++|+   .|++|+|||.
T Consensus       305 gTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS---~D~TIklWd~  355 (356)
T 2w18_A          305 GTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQ---KDGNIFVYHY  355 (356)
T ss_dssp             SCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEEC---TTSCEEEEEE
T ss_pred             CcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEE---CCCcEEEecC
Confidence            9999999974 556666  444444 689999999999998   5679999995

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.75  E-value=7.3e-17  Score=156.38  Aligned_cols=290  Identities=8%  Similarity=-0.037  Sum_probs=168.9

Q ss_pred             EEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceeeeeec--CCee-EEEEeC
Q 013871           30 LWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILYRLRV--PGVA-AFEVSK  100 (434)
Q Consensus        30 iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~~~~~--~~v~-~~~~sp  100 (434)
                      ..|..+|+.+..+.....  +...+..++|||||++|++..+    ..|.+|+.....   ...+..  ..+. .+.|||
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~sp   90 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ---AVQLTEGKGDNTFGGFIST   90 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE---EEECCCSSCBCTTTCEECT
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc---EEEeecCCCCccccceECC
Confidence            447888888777754321  0112457899999999988743    278888886632   222221  1222 378999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE-------------------EEECCCCCeEEEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ-------------------LNWNRGSTGLLAVAQ  161 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~-------------------~~ws~~G~~l~~~~~  161 (434)
                      + +..|++....     ..+.+|++..   ++..............                   ..|+|+|+.+++...
T Consensus        91 d-g~~l~~~~~~-----~~l~~~d~~~---~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  161 (396)
T 3c5m_A           91 D-ERAFFYVKNE-----LNLMKVDLET---LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF  161 (396)
T ss_dssp             T-SSEEEEEETT-----TEEEEEETTT---CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             C-CCEEEEEEcC-----CcEEEEECCC---CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence            9 5566544322     3688888865   3332222211110000                   123444443322100


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCC----CeEEEEecccceeEEeCC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP----ASATIFNKKCRPILELGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~----~~v~l~d~~~~~~~~~~~  236 (434)
                      .   . .   .....|+.+++.+.....+. .....+..+.|+| +|+.+++++....    ..|.++|+.+.....+..
T Consensus       162 ~---~-~---~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~  233 (396)
T 3c5m_A          162 Y---H-T---NPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE  233 (396)
T ss_dssp             H---H-T---CCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC
T ss_pred             c---c-C---CCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec
Confidence            0   0 0   12345788877665333332 3356789999999 8888887654322    478899987655444422


Q ss_pred             ----cCeeEEEECCCCCeEEEEecCCCC--CeEEEEEccCCEEEEEeeCCCceEEEECC-CCCEEEEEEcCCce------
Q 013871          237 ----GPYNTVRWNPKGKFLCLAGFGNLP--GDMAFWDYVDGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRL------  303 (434)
Q Consensus       237 ----~~~~~i~~SP~g~~l~~~~~~~~~--g~i~iwd~~~~~~i~~~~~~~~~~~~wsp-dg~~l~tas~~prl------  303 (434)
                          ..+..+.|||||++|++++.+...  +.|++||+.+++........... +.|+| ||++|++++.. ..      
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~dg~~l~~~~~~-~p~~~~~~  311 (396)
T 3c5m_A          234 HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFDGSLMVGDGCD-APVDVADA  311 (396)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSSSSEEEEEECC-C-------
T ss_pred             cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCCCceEEEecCC-cceeeccc
Confidence                246778999999988877643222  34999999888654433333333 89999 99988876531 10      


Q ss_pred             -----eeCCcEEEEeecCceeeeeec--c-----------cceeeEEEcCCCCCCC
Q 013871          304 -----QIDNGIKIFHHNGSLFFKKMF--D-----------KLFQAEWKPVSPDKFG  341 (434)
Q Consensus       304 -----~~D~~i~iw~~~g~~~~~~~~--~-----------~~~~~~w~p~~~~~~~  341 (434)
                           .-+..|.+|+..+..+.....  .           ....+.|.|++..++.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  367 (396)
T 3c5m_A          312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLF  367 (396)
T ss_dssp             ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred             cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEE
Confidence                 114679999986553332211  1           1455788888765543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.74  E-value=2e-15  Score=145.52  Aligned_cols=272  Identities=8%  Similarity=0.004  Sum_probs=163.3

Q ss_pred             CcEEEEEc--CCCcEE--EEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC-CCCCceeeeeec-CCeeEEEEe
Q 013871           26 KNVILWKT--ETGEAV--YQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT-DFPKGILYRLRV-PGVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~--~~g~~~--~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~-~~~~~~~~~~~~-~~v~~~~~s   99 (434)
                      +.|.+|++  .+|+..  .......  ......++|+||+++|+++..+.|.+|++. +........... .....++|+
T Consensus        14 ~~i~~~~~d~~~g~l~~~~~~~~~~--~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~s   91 (365)
T 1jof_A           14 GAIFTVQFDDEKLTCKLIKRTEIPQ--DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDAD   91 (365)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEECCT--TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTT
T ss_pred             CcEEEEEEECCCCCEEEeeEEccCC--CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEEC
Confidence            46777664  567542  2221111  123447999999998887755599999986 432211111111 224567889


Q ss_pred             CCCCCeEEEEecCC------CC----CCceEEEEEcCCCCCCCceeeeee----cccceeEEEECCCCCeEEEEEEeccc
Q 013871          100 KAPGSHVAVFVPES------KG----SPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVD  165 (434)
Q Consensus       100 p~~~~~ia~~~~~~------~~----~~~~v~i~~~~~~~~~~~i~~~~~----~~~~~~~~~ws~~G~~l~~~~~~~~d  165 (434)
                      |++ ..+.++....      ..    ..+.+.+|++...  +........    .......+.|+|+|++|++. +.   
T Consensus        92 pdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~-~~---  164 (365)
T 1jof_A           92 TNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--GKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA-DL---  164 (365)
T ss_dssp             SCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--CCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ET---
T ss_pred             CCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCC--CcCcceEeeEEeCCCCcceEEEECCCCCEEEEE-cC---
Confidence            984 4322222210      00    3568999999642  333222222    23456789999999987543 11   


Q ss_pred             ccCceeecceeEEEEeeC-Cccee---eeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc---ccee------
Q 013871          166 KTNQSYYGESKLNYLTTD-GTHEG---LVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---CRPI------  231 (434)
Q Consensus       166 ~~~~~~~g~~~l~~l~~~-~~~~~---~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~---~~~~------  231 (434)
                             +...++.++.. .+...   .+.+. +...+..++|+|||+++++. +..++.+.+|+.+   +...      
T Consensus       165 -------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~-~~~~~~v~v~~~~~~~g~~~~~~~~~  236 (365)
T 1jof_A          165 -------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAGNRICEYVIDPATHMPVYTHHSF  236 (365)
T ss_dssp             -------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             -------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE-ECCCCeEEEEEEeCCCCcEEEccceE
Confidence                   11234555543 22111   12222 24568899999999988764 4556799998754   2221      


Q ss_pred             EEeCC-----c-------CeeEEE-ECCCCCeEEEEecCCC---CCeEEEEEcc-CCEEEE---EeeC--CCceEEEECC
Q 013871          232 LELGS-----G-------PYNTVR-WNPKGKFLCLAGFGNL---PGDMAFWDYV-DGKQLG---TTRA--ECSVTSEWSP  289 (434)
Q Consensus       232 ~~~~~-----~-------~~~~i~-~SP~g~~l~~~~~~~~---~g~i~iwd~~-~~~~i~---~~~~--~~~~~~~wsp  289 (434)
                      ..+..     .       ....++ |||||++|+++..+..   .+.|.+|+++ +++...   ....  .....++|+|
T Consensus       237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            11211     1       367899 9999999887764321   2489999986 565432   2322  2455689999


Q ss_pred             ---CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          290 ---DGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       290 ---dg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                         ||++|+++...     ++.|+||++++..+
T Consensus       317 ~~~dg~~l~v~~~~-----~~~v~v~~~~~~~l  344 (365)
T 1jof_A          317 CPWSDEWMAITDDQ-----EGWLEIYRWKDEFL  344 (365)
T ss_dssp             CTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred             CCcCCCEEEEEEcC-----CCeEEEEEEchhhC
Confidence               89999999873     58999999987644

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=5.7e-15  Score=142.38  Aligned_cols=243  Identities=8%  Similarity=-0.029  Sum_probs=149.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC-CCcEEEEEeecCcCCCCCCeeeecCCCcE--EEEe-----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE-TGEAVYQLFQKNMTKTTWPSIRFSSDEAV--ACRM-----------   67 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~-~g~~~~~~~~~~~~~~~~~~~~~S~d~~~--la~~-----------   67 (434)
                      +..++|||||++|++.+     .+ .|.+|++. +|+.+....... . .....++|+|||++  ++.+           
T Consensus        42 ~~~~a~spdg~~l~~~~-----~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  113 (365)
T 1jof_A           42 ISWMTFDHERKNIYGAA-----MK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CSEEEECTTSSEEEEEE-----BT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CcEEEECCCCCEEEEEc-----cc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEecCCcceeccce
Confidence            45799999999999887     45 89999997 887654333211 1 12336899999994  4443           


Q ss_pred             ---cCCeEEEEeCCC-CCCceeeee----ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-CCCCCCce--ee
Q 013871           68 ---ATNEIQFFDTTD-FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-KDLQSQPL--AR  136 (434)
Q Consensus        68 ---~~~~i~v~~~~~-~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-~~~~~~~i--~~  136 (434)
                         .++.+.+|++.. .........    ....+..+.|||++ ..+.+-  +.  ....|.+|++. +   ++..  ..
T Consensus       114 ~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~--~~--~~~~v~~~~~~~~---g~~~~~~~  185 (365)
T 1jof_A          114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSA--DL--TANKLWTHRKLAS---GEVELVGS  185 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEE--ET--TTTEEEEEEECTT---SCEEEEEE
T ss_pred             eecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEE--cC--CCCEEEEEEECCC---CCEEEeee
Confidence               367899999864 322111121    23468899999994 444332  11  23589999997 4   3322  22


Q ss_pred             eee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC-Ccce---eeee-cCC--CC---------Ce
Q 013871          137 RSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHE---GLVP-LRK--EG---------PV  198 (434)
Q Consensus       137 ~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~-~~~~---~~v~-l~~--~~---------~i  198 (434)
                      ...  +......+.|+|+|++|++...  .+..       ..++.++.. +...   ..+. +..  .+         .+
T Consensus       186 ~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~-------v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  256 (365)
T 1jof_A          186 VDAPDPGDHPRWVAMHPTGNYLYALME--AGNR-------ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYR  256 (365)
T ss_dssp             EECSSTTCCEEEEEECTTSSEEEEEET--TTTE-------EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEE
T ss_pred             EecCCCCCCCCEeEECCCCCEEEEEEC--CCCe-------EEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccc
Confidence            221  2345678999999998765421  1111       123333321 2111   1111 211  11         47


Q ss_pred             EEEE-ECcCCCEEEEEEccCC----CeEEEEecc-cceeEE----e--CCcCeeEEEECC---CCCeEEEEecCCCCCeE
Q 013871          199 HDVQ-WSYSGSEFAVVYGFMP----ASATIFNKK-CRPILE----L--GSGPYNTVRWNP---KGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       199 ~~v~-wspdg~~~av~~g~~~----~~v~l~d~~-~~~~~~----~--~~~~~~~i~~SP---~g~~l~~~~~~~~~g~i  263 (434)
                      ..++ |+|||+++++.....+    +.|.+|++. ...+..    .  +......++|+|   ||++|++++.++  +.|
T Consensus       257 ~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~--~~v  334 (365)
T 1jof_A          257 ADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE--GWL  334 (365)
T ss_dssp             EEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS--CEE
T ss_pred             ccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC--CeE
Confidence            8999 9999998876432222    289999984 222221    2  333456899999   899999987542  699


Q ss_pred             EEEEccCC
Q 013871          264 AFWDYVDG  271 (434)
Q Consensus       264 ~iwd~~~~  271 (434)
                      .+|+++..
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            99998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.72  E-value=2e-14  Score=137.89  Aligned_cols=261  Identities=10%  Similarity=0.048  Sum_probs=152.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCC--CcE--EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTET--GEA--VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~--g~~--~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~   75 (434)
                      +..|+|||||++|++.+... ..++.|.+|++..  |+.  +.......   .....+++  |+++|+.+  .++.|.+|
T Consensus        52 p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~---~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           52 PSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMG---ADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSS---SCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCC---CCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            35789999999999988321 1237899998865  543  22322211   22224555  88877766  35799999


Q ss_pred             eCCCCCCceee--eee------------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC----Ccee--
Q 013871           76 DTTDFPKGILY--RLR------------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS----QPLA--  135 (434)
Q Consensus        76 ~~~~~~~~~~~--~~~------------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~----~~i~--  135 (434)
                      ++.........  ...            ...+..+.|+|++ ..+.+..    ...+.|.+|++.... .    +.+.  
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~----~~~~~v~v~~~~~~~-~~~~~~~l~~~  199 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADD----LGTDQIHKFNINPNA-NADNKEKFLTK  199 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEE----TTTTEEEEEEECTTC-CTTTCCCCEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEe----CCCCEEEEEEEcCCC-Ccccccceeec
Confidence            98653221111  111            1234679999994 4333321    234689999987531 1    1011  


Q ss_pred             ----e-eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-ee--eec--CCCCCeEEEEECc
Q 013871          136 ----R-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GL--VPL--RKEGPVHDVQWSY  205 (434)
Q Consensus       136 ----~-~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~--v~l--~~~~~i~~v~wsp  205 (434)
                          . ..........+.|+|+|+.+++...  .+..         +..++...... ..  +..  .......+++|+|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~---------v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGT---------VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCE---------EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             ccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCe---------EEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence                1 1112334568999999998766421  1111         23333222211 11  111  1123467999999


Q ss_pred             CCCEEEEEEccC-CCeEEEEecc--c-c--eeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEE
Q 013871          206 SGSEFAVVYGFM-PASATIFNKK--C-R--PILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGT  276 (434)
Q Consensus       206 dg~~~av~~g~~-~~~v~l~d~~--~-~--~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~  276 (434)
                      ||+++++. ... ++.+.+|++.  . .  .+..+. ......++|||||++|++++.++  +.|.+|  |.++++....
T Consensus       269 dg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~--~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          269 DGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT--NVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             TSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT--TEEEEEEECTTTCCEEEC
T ss_pred             CCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC--CCEEEEEEECCCCcEeec
Confidence            99988763 444 5799999984  2 2  222332 34567899999999999887543  689996  5557765543


Q ss_pred             e---eCCCceEEEEC
Q 013871          277 T---RAECSVTSEWS  288 (434)
Q Consensus       277 ~---~~~~~~~~~ws  288 (434)
                      .   ..+.++++.|.
T Consensus       346 ~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          346 KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             SCCEECSSEEEEEEE
T ss_pred             ceeeeCCCCeEEEEc
Confidence            2   33467777775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=1e-14  Score=139.00  Aligned_cols=271  Identities=10%  Similarity=0.082  Sum_probs=164.1

Q ss_pred             cceEEecCCCcEEEEEecCC----CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----C--e
Q 013871            2 LLLLTCLRVGLIIQTFQKSS----TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----N--E   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~----~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~--~   71 (434)
                      +..++|  ||++|+......    ...+.+|.+||+.+++. ..+ .     . +..++|||||++|++...    +  .
T Consensus        17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~-----~-~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-E-----N-ATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-E-----S-CEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-c-----c-CCCeEECCCCCEEEEEEeccCCCcce
Confidence            345677  999998754211    11256899999998875 333 1     2 237899999999998742    3  4


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-C---------------------CCCceEEEEEcCCCC
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-K---------------------GSPASVQIYACGKDL  129 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~---------------------~~~~~v~i~~~~~~~  129 (434)
                      |.+|++........... .. +..+.|||+ +..|++...+. .                     .....|.+|++..  
T Consensus        87 l~~~~~~~g~~~~l~~~-~~-~~~~~wspd-g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--  161 (347)
T 2gop_A           87 IWVADLETLSSKKILEA-KN-IRSLEWNED-SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--  161 (347)
T ss_dssp             EEEEETTTTEEEEEEEE-SE-EEEEEECTT-SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--
T ss_pred             EEEEECCCCceEEEEcC-CC-ccceeECCC-CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--
Confidence            77788765332111111 22 889999999 55565543220 0                     1135688888865  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                       ++.+..+.. . ....+.|+|+|  +++.+..+.+..  ...+...||.++ .+. ...+.- . +.+..  +||||+.
T Consensus       162 -~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~--~~~~~~~l~~~d-~~~-~~~l~~-~-~~~~~--~spdg~~  228 (347)
T 2gop_A          162 -EEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIP--QYFKFWDIYIWE-DGK-EEKMFE-K-VSFYA--VDSDGER  228 (347)
T ss_dssp             -TEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSC--CSSCCEEEEEEE-TTE-EEEEEE-E-ESEEE--EEECSSC
T ss_pred             -CeEEeeecC-C-CcccccCCCCe--EEEEEecccccc--cccccccEEEeC-CCc-eEEecc-C-cceee--ECCCCCE
Confidence             444344444 3 67789999999  555443221100  000133578777 332 222221 2 44444  4999999


Q ss_pred             EEEEEccC------CCeEEEEecccceeEEe---CCcCeeE-EEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          210 FAVVYGFM------PASATIFNKKCRPILEL---GSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       210 ~av~~g~~------~~~v~l~d~~~~~~~~~---~~~~~~~-i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      +++++...      ...|.+|| .+. ...+   +...+.. +.|+ || +++++.   .+|.+.|| +.+++......+
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~---~~~~~~l~-~~~g~~~~~~~~  300 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLF---EEGSVNLY-IWDGEIKPIAKG  300 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEE---ETTEEEEE-EESSSEEEEECS
T ss_pred             EEEEEccccCCccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-EEEEEe---cCCcEEEE-EcCCceEEEecC
Confidence            98765332      24788888 443 3333   2455665 8999 98 777776   44688998 876655444443


Q ss_pred             C-CceEEEECCCCCEEEEEEcCCceeeCCcE-EEEeecC
Q 013871          280 E-CSVTSEWSPDGRYFMTATTAPRLQIDNGI-KIFHHNG  316 (434)
Q Consensus       280 ~-~~~~~~wspdg~~l~tas~~prl~~D~~i-~iw~~~g  316 (434)
                      . .+..++|+|  +.+++++.      ++.. .||.++|
T Consensus       301 ~~~v~~~~~s~--~~~~~~~~------~~~~~~l~~~~g  331 (347)
T 2gop_A          301 RHWIMGFDVDE--IVVYLKET------ATRLRELFTWDG  331 (347)
T ss_dssp             SSEEEEEEESS--SEEEEEEC------SSSCCEEEEESS
T ss_pred             CCeEEeeeeeC--cEEEEEcC------CCChHHheEeCC
Confidence            3 445699999  67777776      5543 7777763

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=4.8e-15  Score=154.11  Aligned_cols=290  Identities=8%  Similarity=-0.027  Sum_probs=168.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCC---------eeeec--CCCcE-EEEecC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWP---------SIRFS--SDEAV-ACRMAT   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~---------~~~~S--~d~~~-la~~~~   69 (434)
                      |..++||+++-++++..+.   .++...||.+..+.....+....   ..+.         .+.|+  |||++ |++..+
T Consensus        26 ~~~~~~s~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~   99 (662)
T 3azo_A           26 PACVGAVGDEVWWVAPRPA---EAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF   99 (662)
T ss_dssp             CEEEEEETTEEEEEEEETT---TTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT
T ss_pred             cceeEEcCCeEEEEecCcc---cCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeEEEEEEC
Confidence            6788999887777665311   46788999865444455554432   2222         45566  99998 888765


Q ss_pred             --CeEEEEeCC--C-CCCceeeee-----ecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCC--CCC
Q 013871           70 --NEIQFFDTT--D-FPKGILYRL-----RVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDL--QSQ  132 (434)
Q Consensus        70 --~~i~v~~~~--~-~~~~~~~~~-----~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~--~~~  132 (434)
                        ..|.+++..  . ... .....     +...+..++|||+ +..|++...+.     ......|.+|++....  ...
T Consensus       100 ~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spD-g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A          100 GDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPE-RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             TTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETT-TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             CCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCC-CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence              467777665  1 221 11111     1234778999999 45555443221     0222478888876410  002


Q ss_pred             ceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-c---ceeeeecCCCCCeEEEEECcCC
Q 013871          133 PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-T---HEGLVPLRKEGPVHDVQWSYSG  207 (434)
Q Consensus       133 ~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~---~~~~v~l~~~~~i~~v~wspdg  207 (434)
                      ....+. ........+.|||||+.|++....   .....| +...|+.+++.+ +   ....+.-.+...+..++|+|||
T Consensus       178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~---~~~~~~-~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWD---HPRMPW-EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             GSEESSCSCSSEECCCEECTTSSEEEEEEEC---TTCCTT-TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             ceeEEEecCCCcccCceECCCCCEEEEEECC---CCCCCC-CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence            333443 334455678999999998775422   222211 234688888873 3   2223332235789999999999


Q ss_pred             CEEEEEEccCCC--eEEEEecccceeEEe---CCcC--------eeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCE
Q 013871          208 SEFAVVYGFMPA--SATIFNKKCRPILEL---GSGP--------YNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGK  272 (434)
Q Consensus       208 ~~~av~~g~~~~--~v~l~d~~~~~~~~~---~~~~--------~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~  272 (434)
                      + ++++ +..++  .|.+||+.+.....+   +...        +..++|+|+|++++++.   . |.+.||  |..+++
T Consensus       254 ~-l~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~---~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          254 S-LIVA-TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG---K-GAAVLGILDPESGE  327 (662)
T ss_dssp             C-EEEE-ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB---S-SSCEEEEEETTTTE
T ss_pred             e-EEEE-ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE---c-CccEEEEEECCCCc
Confidence            9 5553 45566  777788754444433   1111        46789999999988886   3 566777  666666


Q ss_pred             EEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          273 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       273 ~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                       +..+..+ ......|++||..++..+..+    +....||.+
T Consensus       328 -~~~l~~~~~~~~~~~s~~~~~~~~~~~~~----~~~~~i~~~  365 (662)
T 3azo_A          328 -LVDAAGPWTEWAATLTVSGTRAVGVAASP----RTAYEVVEL  365 (662)
T ss_dssp             -EEECCSSCCEEEEEEEEETTEEEEEEEET----TEEEEEEEE
T ss_pred             -EEEecCCCCeEEEEEecCCCEEEEEEcCC----CCCCEEEEE
Confidence             4455444 222322377776655444311    444455544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.68  E-value=4.9e-14  Score=133.77  Aligned_cols=245  Identities=9%  Similarity=-0.027  Sum_probs=148.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~----------   68 (434)
                      +..++|||+|++|+....    .++.|.+||+.+++.+..+......   ......++|+|||++++.+.          
T Consensus        45 ~~~~~~s~dg~~~~v~~~----~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           45 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CceeEECCCCCEEEEEeC----CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            457899999998766551    4688999999999888776543100   12244889999999988875          


Q ss_pred             ---CCeEEEEeCCCCCCcee-eeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013871           69 ---TNEIQFFDTTDFPKGIL-YRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-  142 (434)
Q Consensus        69 ---~~~i~v~~~~~~~~~~~-~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-  142 (434)
                         ++.|.+||+.+...... .... ...+..++|+|++. .++  . .     ..|.+|++.+   ++.+........ 
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~--~-~-----~~i~~~d~~~---~~~~~~~~~~~~~  188 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV--A-G-----PDIYKMDVKT---GKYTVALPLRNWN  188 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE--E-S-----SSEEEECTTT---CCEEEEECSTTCC
T ss_pred             ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE--c-c-----CcEEEEeCCC---CceeccccccccC
Confidence               48999999876321111 1122 23578889999954 332  1 1     2388998876   444443332210 


Q ss_pred             -----------------------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCe
Q 013871          143 -----------------------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPV  198 (434)
Q Consensus       143 -----------------------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i  198 (434)
                                             ....+.+++++.....           .+.+...+..++........+.+. ....+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (349)
T 1jmx_B          189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA-----------TADLLYGYLSVDLKTGKTHTQEFADLTELY  257 (349)
T ss_dssp             CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C-----------CCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred             CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcc-----------ccccceeEEEEeccCCcEEecccccCCCcc
Confidence                                   0111223322211000           000001111122222211112111 24567


Q ss_pred             EEEEECc-CCCEEEEEEccCCCeEEEEeccccee-EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          199 HDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       199 ~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~-~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      ..++|+| ||+.+++.    ++.|.+||++...+ ..+ .......++|+|+|++|++++   .++.|.+||+++++.+.
T Consensus       258 ~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          258 FTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             EEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEE
T ss_pred             eeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec---CCCeEEEEeccccceee
Confidence            8999999 99998864    56999999975443 333 334567899999999888865   34799999999999888


Q ss_pred             EeeCC
Q 013871          276 TTRAE  280 (434)
Q Consensus       276 ~~~~~  280 (434)
                      .+..+
T Consensus       331 ~~~~~  335 (349)
T 1jmx_B          331 NIKLP  335 (349)
T ss_dssp             EEECS
T ss_pred             eeecC
Confidence            77554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.65  E-value=1.4e-13  Score=144.48  Aligned_cols=292  Identities=11%  Similarity=-0.045  Sum_probs=172.1

Q ss_pred             cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC--C----eEEEEeCC
Q 013871            8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT--N----EIQFFDTT   78 (434)
Q Consensus         8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~--~----~i~v~~~~   78 (434)
                      +|||++++......+.....|.+.+..+++...-+....   .+...+..++|||||++||++.+  +    +|++||+.
T Consensus        80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~  159 (710)
T 2xdw_A           80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD  159 (710)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred             EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence            599999987664322222345555555554322221111   01113447899999999998732  2    89999998


Q ss_pred             CCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC-----------CCCceEEEEEcCCCCCCCce--eeeee--cccc
Q 013871           79 DFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK-----------GSPASVQIYACGKDLQSQPL--ARRSF--FRCS  143 (434)
Q Consensus        79 ~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~-----------~~~~~v~i~~~~~~~~~~~i--~~~~~--~~~~  143 (434)
                      +.... ...+....+..++|||| +..|++......           ..+..|.+|++.+   ++..  .....  +...
T Consensus       160 tg~~~-~~~~~~~~~~~~~wspD-g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~~v~~~~~~~~~  234 (710)
T 2xdw_A          160 GAKEL-PDVLERVKFSCMAWTHD-GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT---DQSEDILCAEFPDEPKW  234 (710)
T ss_dssp             TTEEE-EEEEEEECSCCEEECTT-SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS---CGGGCEEEECCTTCTTC
T ss_pred             CCCCC-cccccCcccceEEEEeC-CCEEEEEEECCccccccccccccCCCCEEEEEECCC---CcccceEEeccCCCCeE
Confidence            74431 11222223667999999 455554433222           2255799999866   3321  11111  2223


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC------cc--eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------TH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~--~~~v~l~~~~~i~~v~wspdg~~~av~~g  215 (434)
                      ...+.|+|||++|++......+       ....||++++.+      ..  ...+.. ....+.. .|+|+|+.|++.+.
T Consensus       235 ~~~~~~SpDg~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~  305 (710)
T 2xdw_A          235 MGGAELSDDGRYVLLSIREGCD-------PVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTN  305 (710)
T ss_dssp             EEEEEECTTSCEEEEEEECSSS-------SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEccCC-------CccEEEEEECcccccccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEEC
Confidence            5688999999998876532211       123577777654      21  222222 2333433 58999999998754


Q ss_pred             cC--CCeEEEEecccce---eEEe--CC--cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE
Q 013871          216 FM--PASATIFNKKCRP---ILEL--GS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT  284 (434)
Q Consensus       216 ~~--~~~v~l~d~~~~~---~~~~--~~--~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~  284 (434)
                      ..  ...|.+||+....   ...+  +.  ..+..+.|++++.+++++..+ ....|++||+.+++.+..+..+  .+..
T Consensus       306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~-g~~~l~~~~~~~g~~~~~l~~~~~~v~~  384 (710)
T 2xdw_A          306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDLATGALLKIFPLEVGSVVG  384 (710)
T ss_dssp             TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEETTTCCEEEEECCCSSEEEE
T ss_pred             CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC-CEEEEEEEECCCCCEEEecCCCCceEEE
Confidence            32  2379999986432   1222  22  257789999777777666532 2235778888777766666544  3445


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +.++||+..|+...+++.  ....|.+||+..
T Consensus       385 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~t  414 (710)
T 2xdw_A          385 YSGQKKDTEIFYQFTSFL--SPGIIYHCDLTK  414 (710)
T ss_dssp             EECCTTCSEEEEEEECSS--CCCEEEEEETTS
T ss_pred             EecCCCCCEEEEEEeCCC--CCCEEEEEECCC
Confidence            899999987775544221  157889999853

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.64  E-value=6e-15  Score=145.76  Aligned_cols=137  Identities=13%  Similarity=0.192  Sum_probs=108.7

Q ss_pred             CCCCeEEEEECcCCCEEEEE--EccCCCeEEEEecccc---------e---eEEe--CCcCeeEEEECCC-CCeEEEEec
Q 013871          194 KEGPVHDVQWSYSGSEFAVV--YGFMPASATIFNKKCR---------P---ILEL--GSGPYNTVRWNPK-GKFLCLAGF  256 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~--~g~~~~~v~l~d~~~~---------~---~~~~--~~~~~~~i~~SP~-g~~l~~~~~  256 (434)
                      ..+.|.+++|+|+|+.|+++  +|..++.|++||++..         .   +..+  |...+++++|+|+ +++|++++ 
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s-  169 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL-  169 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE-
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE-
Confidence            35789999999999999875  5788999999998532         1   2222  5789999999998 78999998 


Q ss_pred             CCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee--ec-------c
Q 013871          257 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MF-------D  325 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~--~~-------~  325 (434)
                        .+|+|++||++++..+.....|  .+..++|+|||++|++++.      |+.|+|||..++.....  +.       .
T Consensus       170 --~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          170 --ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ------NGTVVQYLPTLQEKKVIPCPPFYESDHPV  241 (434)
T ss_dssp             --TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET------TSCEEEECTTCCEEEEECCCTTCCTTSCE
T ss_pred             --CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC------CCcEEEEccCCcccccccCCcccCCCCce
Confidence              5679999999998766555443  6777999999999999999      99999999986654332  11       1


Q ss_pred             cceeeEEEcCCCCC
Q 013871          326 KLFQAEWKPVSPDK  339 (434)
Q Consensus       326 ~~~~~~w~p~~~~~  339 (434)
                      .+..+.|.|....+
T Consensus       242 ~v~~v~w~~~~~~l  255 (434)
T 2oit_A          242 RVLDVLWIGTYVFA  255 (434)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             eEEEEEEecCceEE
Confidence            67899999876554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.63  E-value=1.9e-13  Score=143.48  Aligned_cols=255  Identities=9%  Similarity=-0.032  Sum_probs=158.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE---------   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~---------   71 (434)
                      +..++|||||++|+......+.....|+|||+.+|+.+......    ..+..+.|||||+.|+++.. +.         
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            45789999999999877544444458999999999876543222    12337899999998888742 23         


Q ss_pred             -------EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC----CCCceee
Q 013871           72 -------IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL----QSQPLAR  136 (434)
Q Consensus        72 -------i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~----~~~~i~~  136 (434)
                             |.+|++............    ...+..+.|||+ +..|++...........|.+|++....    .......
T Consensus       203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  281 (710)
T 2xdw_A          203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (710)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence                   999998764321111112    123678999999 556655543322225688999986410    0113344


Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCC-CCeEEEEECcCCCEEEE
Q 013871          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKE-GPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~-~~i~~v~wspdg~~~av  212 (434)
                      +....... ...|+++|+.|++.+..+  .      ....|+.+++.+...   ..+.-... ..+.+++|++++ .+++
T Consensus       282 l~~~~~~~-~~~~s~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~  351 (710)
T 2xdw_A          282 LIDNFEGE-YDYVTNEGTVFTFKTNRH--S------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVL  351 (710)
T ss_dssp             EECSSSSC-EEEEEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEE
T ss_pred             eeCCCCcE-EEEEeccCCEEEEEECCC--C------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEE
Confidence            44333333 335899999988764321  1      122477777655421   22222212 367889999654 4544


Q ss_pred             EEccCCC--eEEEEec-ccceeEEe--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCE
Q 013871          213 VYGFMPA--SATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       213 ~~g~~~~--~v~l~d~-~~~~~~~~--~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~  272 (434)
                      . ...++  .|.+||+ .+..+..+  +.+.+..+.++|+++.|++. +.....+.|++||+.+++
T Consensus       352 ~-~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 C-YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             E-EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             E-EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            3 44455  5677787 45544444  56667889999999866544 333457899999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.63  E-value=2e-13  Score=131.48  Aligned_cols=293  Identities=10%  Similarity=0.072  Sum_probs=172.7

Q ss_pred             CCCcEEEEEecCCC-CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013871            9 RVGLIIQTFQKSST-PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD   76 (434)
Q Consensus         9 P~g~~L~t~~~~~~-~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~   76 (434)
                      |++++|........ ..|+.|.+||..+++.+.++....   .  +.++||||+++++.+.           ++.|.+||
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~---~--p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d   87 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAF---N--GHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD   87 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCE---E--EEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCC---C--CceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence            47888877652211 136799999999999888776542   2  2789999999888764           35799999


Q ss_pred             CCCCCCceeeeee------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEE
Q 013871           77 TTDFPKGILYRLR------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNW  149 (434)
Q Consensus        77 ~~~~~~~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~w  149 (434)
                      ...........+.      ......+.++|++ .++.+...   +..+.|.+|++.+   .+.+.. .....  ...+..
T Consensus        88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg-~~l~v~n~---~~~~~v~v~d~~~---~~~~~~~i~~~~--~~~v~~  158 (361)
T 2oiz_A           88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG-KFIVLQNA---SPATSIGIVDVAK---GDYVEDVTAAAG--CWSVIP  158 (361)
T ss_dssp             TTTCCEEEEEEECTTBCCBCCCGGGEEECTTS-SEEEEEEE---SSSEEEEEEETTT---TEEEEEEGGGTT--EEEEEE
T ss_pred             CcCCcEEEEEEcCccccccCCCcceEEECCCC-CEEEEECC---CCCCeEEEEECCC---CcEEEEEecCCC--cceeEE
Confidence            8765432222221      1245678999994 44433221   1246899999987   555544 32211  111233


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccce------eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHE------GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~------~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .|+|...++..+  .|..         +..+...  +...      ..+... ..++ .+.++|++..++++  ..++.+
T Consensus       159 ~p~~~~~~~~~~--~dg~---------~~~v~~~~~g~~~~~~~~~~~~~~~-~~~~-~~~~~~~g~~~~~~--~~~~~v  223 (361)
T 2oiz_A          159 QPNRPRSFMTIC--GDGG---------LLTINLGEDGKVASQSRSKQMFSVK-DDPI-FIAPALDKDKAHFV--SYYGNV  223 (361)
T ss_dssp             CTTSSSEEEEEE--TTSS---------EEEEEECTTSSEEEEEECCCCSCTT-TSCB-CSCCEECSSEEEEE--BTTSEE
T ss_pred             cCCCCeeEEEEC--CCCc---------EEEEEECCCCcEeeeccccceEcCC-CCce-EEEecccCCEEEEE--eCCCeE
Confidence            444432222111  1111         1111111  1100      001111 1222 33446788777754  346789


Q ss_pred             EEEecccceeE---Ee--CC----------cCeeEEEECCCCCeEEEEec-CC-------CCCeEEEEEccCCEEEEEee
Q 013871          222 TIFNKKCRPIL---EL--GS----------GPYNTVRWNPKGKFLCLAGF-GN-------LPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       222 ~l~d~~~~~~~---~~--~~----------~~~~~i~~SP~g~~l~~~~~-~~-------~~g~i~iwd~~~~~~i~~~~  278 (434)
                      .++|+....+.   .+  ..          .....++|+|+|+.++++.. +.       ..+.|.+||+.+++.+..+.
T Consensus       224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~  303 (361)
T 2oiz_A          224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP  303 (361)
T ss_dssp             EEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence            99998533211   11  00          11223799999988777642 10       13489999999999999887


Q ss_pred             CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC--ceeeee-ec-ccceeeEEEcCCC
Q 013871          279 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG--SLFFKK-MF-DKLFQAEWKPVSP  337 (434)
Q Consensus       279 ~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g--~~~~~~-~~-~~~~~~~w~p~~~  337 (434)
                      .+.+..++|+|||++|+++.       ++.|.|||. +|  +++... .. ..-..+.+.|++.
T Consensus       304 ~~~p~~ia~spdg~~l~v~n-------~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          304 GRDALSMTIDQQRNLMLTLD-------GGNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             CTTCCEEEEETTTTEEEEEC-------SSCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             cCCeeEEEECCCCCEEEEeC-------CCeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            66666799999999887654       489999998 45  555553 22 2346777887753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=7.5e-13  Score=127.40  Aligned_cols=264  Identities=12%  Similarity=0.088  Sum_probs=155.7

Q ss_pred             eEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCc---CCCCCCeeeecCCCcEEEEec---CCeE
Q 013871            4 LLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNM---TKTTWPSIRFSSDEAVACRMA---TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~---~~~~~~~~~~S~d~~~la~~~---~~~i   72 (434)
                      .++|||||++|.+....     .+..++.|.+||+.+++.+.++.....   .......+++||||++|+.+.   ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            58999999999987631     112356799999999999888764310   012233789999999998763   4799


Q ss_pred             EEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---eccc--ceeE
Q 013871           73 QFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRC--STVQ  146 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~--~~~~  146 (434)
                      .+||+....  .... +...+...+.+.|++...++...+     ++.+.++.+...  ++......   .+..  ....
T Consensus       134 ~v~d~~~~~--~~~~~i~~~~~~~v~~~p~~~~~~~~~~~-----dg~~~~v~~~~~--g~~~~~~~~~~~~~~~~~~~~  204 (361)
T 2oiz_A          134 GIVDVAKGD--YVEDVTAAAGCWSVIPQPNRPRSFMTICG-----DGGLLTINLGED--GKVASQSRSKQMFSVKDDPIF  204 (361)
T ss_dssp             EEEETTTTE--EEEEEGGGTTEEEEEECTTSSSEEEEEET-----TSSEEEEEECTT--SSEEEEEECCCCSCTTTSCBC
T ss_pred             EEEECCCCc--EEEEEecCCCcceeEEcCCCCeeEEEECC-----CCcEEEEEECCC--CcEeeeccccceEcCCCCceE
Confidence            999998753  2334 444444445566764444333332     234555555431  12111100   0100  0111


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecCC---------CCCeEEEEECcCCCEEEEEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~v~wspdg~~~av~~  214 (434)
                      +..+++|..+++..   .+       +  .++.++........   ..+..         ......++++||++++++..
T Consensus       205 ~~~~~~g~~~~~~~---~~-------~--~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~  272 (361)
T 2oiz_A          205 IAPALDKDKAHFVS---YY-------G--NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM  272 (361)
T ss_dssp             SCCEECSSEEEEEB---TT-------S--EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred             EEecccCCEEEEEe---CC-------C--eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence            22245555544321   11       1  24444433221111   01100         11222378999999888753


Q ss_pred             c-c--------CCCeEEEEecccce-eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CC
Q 013871          215 G-F--------MPASATIFNKKCRP-ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AE  280 (434)
Q Consensus       215 g-~--------~~~~v~l~d~~~~~-~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~  280 (434)
                      . .        ....|.+||++... +..+..+....|+|+|||++|++++.    +.|.+||..++  +.+..+.  +.
T Consensus       273 ~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~----~~v~v~D~~t~~l~~~~~i~~~G~  348 (361)
T 2oiz_A          273 HPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG----GNVNVYDISQPEPKLLRTIEGAAE  348 (361)
T ss_dssp             ESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS----SCEEEEECSSSSCEEEEEETTSCS
T ss_pred             ccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC----CeEEEEECCCCcceeeEEeccCCC
Confidence            2 1        13489999997544 44442111899999999999888762    69999999999  9998863  34


Q ss_pred             CceEEEECCCCC
Q 013871          281 CSVTSEWSPDGR  292 (434)
Q Consensus       281 ~~~~~~wspdg~  292 (434)
                      .+..+.++|||+
T Consensus       349 ~P~~~~~~p~G~  360 (361)
T 2oiz_A          349 ASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEECCCSC
T ss_pred             CcEEEEecCCCC
Confidence            667799999986

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.58  E-value=1.2e-13  Score=136.48  Aligned_cols=162  Identities=14%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             cceeEEEECCCCCeEEEEE-EecccccCceeecceeEEEEeeC--Cc-ce------eeeecCCCCCeEEEEECcC-CCEE
Q 013871          142 CSTVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTD--GT-HE------GLVPLRKEGPVHDVQWSYS-GSEF  210 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~-~~~~d~~~~~~~g~~~l~~l~~~--~~-~~------~~v~l~~~~~i~~v~wspd-g~~~  210 (434)
                      ..+..+.|+|+|+.|++.. +...|.+.+.       |.+...  +. ..      ......+...|.+++|+|+ +..|
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~i-------wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAF-------FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEE-------EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEE-------EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            4567899999999887643 2333444433       322111  00 00      0111124678999999998 6777


Q ss_pred             EEEEccCCCeEEEEecccce-eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------
Q 013871          211 AVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------  280 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~~~-~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------  280 (434)
                      +  ++..|+.|++||++... +...  |...+++++|||+|++|++|+   .+|.|.+||.+ ++....+..+       
T Consensus       166 a--s~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~~  239 (434)
T 2oit_A          166 A--VCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESDH  239 (434)
T ss_dssp             E--EEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred             E--EEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCCC
Confidence            7  57779999999997543 2222  577899999999999999999   56799999998 4444443322       


Q ss_pred             --CceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeecC
Q 013871          281 --CSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 --~~~~~~wspdg~~l~tas~~-prl~~D~~i~iw~~~g  316 (434)
                        .+..++|++++.++++.+.. -+......+++|++..
T Consensus       240 ~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          240 PVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             CEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             ceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence              45569999999988776542 1111123499999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.57  E-value=1.9e-11  Score=124.16  Aligned_cols=290  Identities=13%  Similarity=0.065  Sum_probs=178.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcC--CCcEEEEEeecCcCCCCCCeeeec----CCCcEEEEe--cCCeEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTE--TGEAVYQLFQKNMTKTTWPSIRFS----SDEAVACRM--ATNEIQ   73 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~--~g~~~~~~~~~~~~~~~~~~~~~S----~d~~~la~~--~~~~i~   73 (434)
                      +..+.|||||+||.+.+     .|+.|.+||+.  +++.+.++....    .-..+.||    |||++++.+  .+++|.
T Consensus       199 p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~----~P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          199 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS----EARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS----EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             ccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC----CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence            35789999999999887     67899999995  888888876542    22378999    699988876  458999


Q ss_pred             EEeCCCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee-cc
Q 013871           74 FFDTTDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF-FR  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~-~~  141 (434)
                      |+|..++.........           ...+..+..|++ ++.+.+...    ..+.|.++++..   ...+..... ..
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~-~~~~vv~~~----~~g~v~~vd~~~---~~~~~v~~i~~~  341 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY-RPEFIVNVK----ETGKILLVDYTD---LNNLKTTEISAE  341 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS-SSEEEEEET----TTTEEEEEETTC---SSEEEEEEEECC
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC-CCEEEEEec----CCCeEEEEecCC---Cccceeeeeecc
Confidence            9998776543222211           115667777877 343333332    336788888765   221211111 11


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeec-C---CCCCeEEEEECcCCCEEEEEEcc
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPL-R---KEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l-~---~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      .....+.|+|+|+++++....           ...+..+++.... ...+++ .   +.+.--.+ ++|++..+.+....
T Consensus       342 ~~~~d~~~~pdgr~~~va~~~-----------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~  409 (567)
T 1qks_A          342 RFLHDGGLDGSHRYFITAANA-----------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM  409 (567)
T ss_dssp             SSEEEEEECTTSCEEEEEEGG-----------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             ccccCceECCCCCEEEEEeCC-----------CCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence            123367899999998775321           1235555554432 223344 2   12211122 57886666553333


Q ss_pred             CCCeEEEEeccc--------ceeEEeC--CcCeeEEEECCCCCeEEEEecCCC----CCeEEEEEccCC---------EE
Q 013871          217 MPASATIFNKKC--------RPILELG--SGPYNTVRWNPKGKFLCLAGFGNL----PGDMAFWDYVDG---------KQ  273 (434)
Q Consensus       217 ~~~~v~l~d~~~--------~~~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~----~g~i~iwd~~~~---------~~  273 (434)
                      .++.|.++|...        +.+..+.  ...-..|..+|+|++|.+....+-    ...|.++|+.+.         +.
T Consensus       410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~  489 (567)
T 1qks_A          410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT  489 (567)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEE
T ss_pred             CCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEE
Confidence            457999999864        3445543  222245889999999988764221    358999999877         22


Q ss_pred             EEEe-------eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871          274 LGTT-------RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       274 i~~~-------~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~  321 (434)
                      +...       .+..+.+++|+|||+++.++.-. +..-++.|.|+|.. ++++..
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~-~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          490 LPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN-GKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             ECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC-CTTSCCEEEEEETTTTEEEEE
T ss_pred             eccccccccCCCCcceEeeeECCCCCEEEEEeec-CCCCCCcEEEEECCCceEEEE
Confidence            2211       12366789999999999887421 00016899999874 444433

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=6.4e-13  Score=126.40  Aligned_cols=236  Identities=12%  Similarity=0.017  Sum_probs=136.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T-----------   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----------   69 (434)
                      +..+.|||||++|++.+...+.....|.+||+.+|+........    . +..+.|||||+.|++.. +           
T Consensus        61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES----E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC----C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            46789999999999877332112345888999888765443332    2 55899999999888874 1           


Q ss_pred             ----------------CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC--c-eEEEEEcCCCCC
Q 013871           70 ----------------NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP--A-SVQIYACGKDLQ  130 (434)
Q Consensus        70 ----------------~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~--~-~v~i~~~~~~~~  130 (434)
                                      ..|.+|++...........  +.+..+.|+|++   +++........+  . ...||.+..   
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~~~~~~~~spdg---~~~~~~~~~~~~~~~~~~~l~~~d~---  207 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--PRFSSGIWHRDK---IVVNVPHREIIPQYFKFWDIYIWED---  207 (347)
T ss_dssp             -CCCC---------CEEEEEEEETTTTEEEEEEEE--ETTCEEEEETTE---EEEEEECCCSSCCSSCCEEEEEEET---
T ss_pred             ccceeecCcccccCccceEEEEECCCCeEEeeecC--CCcccccCCCCe---EEEEEecccccccccccccEEEeCC---
Confidence                            4788899876432112222  278899999985   333222211111  1 334554433   


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEE-EEECcCCCE
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD-VQWSYSGSE  209 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~-v~wspdg~~  209 (434)
                      +.. ..+... ...  ..++|+|+.|++......+.    ......|+.++ .+. ...+.......+.. +.|+ || .
T Consensus       208 ~~~-~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~----~~~~~~l~~~d-~~~-~~~l~~~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          208 GKE-EKMFEK-VSF--YAVDSDGERILLYGKPEKKY----MSEHNKLYIYD-GKE-VMGILDEVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             TEE-EEEEEE-ESE--EEEEECSSCEEEEECCSSSC----CCSSCEEEEEC-SSC-EEESSTTCCSEEEEEEEET-TE-E
T ss_pred             Cce-EEeccC-cce--eeECCCCCEEEEEEccccCC----ccccceEEEEC-CCc-eEeccccCCcccCCccEEc-Cc-E
Confidence            332 222222 232  23499999987764322110    01123577777 332 22222233567776 9999 87 4


Q ss_pred             EEEEEccCCCeEEEEecc-cceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          210 FAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~-~~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ++  .+..++.+.|| +. +.....+ +.+.+.++.|+|  +++++++.+.....|+.+|
T Consensus       276 ~~--~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          276 YF--TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE--EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE--EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            44  35567788888 64 3322222 466788999999  6666665443333455555

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=3.6e-12  Score=120.60  Aligned_cols=270  Identities=8%  Similarity=-0.015  Sum_probs=165.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |.+|.|+|++..++...     .++.+++|   .++....+....   .....++|++|++++++. .++.|.+|+....
T Consensus         8 ~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~   76 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKG---LQLEGLNFDRQGQLFLLDVFEGNIFKINPETK   76 (333)
T ss_dssp             CCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSC---CCEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred             cceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccC---ccccCcEECCCCCEEEEECCCCEEEEEeCCCC
Confidence            67899999998887664     57888899   355555554432   233488999999977766 4579999998764


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECCCCCeEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ............+..+.++|++ .+++.- .........|.+|+...   ........  ........+.++|+|..+ +
T Consensus        77 ~~~~~~~~~~~~~~~i~~~~dg-~l~v~~-~~~~~~~~~i~~~d~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~l~-v  150 (333)
T 2dg1_A           77 EIKRPFVSHKANPAAIKIHKDG-RLFVCY-LGDFKSTGGIFAATENG---DNLQDIIEDLSTAYCIDDMVFDSKGGFY-F  150 (333)
T ss_dssp             CEEEEEECSSSSEEEEEECTTS-CEEEEE-CTTSSSCCEEEEECTTS---CSCEEEECSSSSCCCEEEEEECTTSCEE-E
T ss_pred             cEEEEeeCCCCCcceEEECCCC-cEEEEe-CCCCCCCceEEEEeCCC---CEEEEEEccCccCCcccceEECCCCCEE-E
Confidence            3211111223568999999985 333221 11111224678888765   22221111  122346678999999743 3


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--cceeE----
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPIL----  232 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~~----  232 (434)
                      ......  .   ..+...|+.++..+.....+. .....+..++|+|+|+.+++. ....+.|.+||.+  +..+.    
T Consensus       151 ~~~~~~--~---~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          151 TDFRGY--S---TNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EECCCB--T---TBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEE
T ss_pred             Eecccc--c---cCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccc
Confidence            221100  0   001234777765543222221 112457899999999987764 4456799999984  22221    


Q ss_pred             ----EeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEEc
Q 013871          233 ----ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       233 ----~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas~  299 (434)
                          .+. ......++++++|++++...   .++.|.+||. +++.+..+..+        .+..++|+|||+.|+.++.
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~---~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEEEecCCCCCCCceEECCCCCEEEEEc---CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence                111 13567799999999776654   2368999998 45566655543        3567999999988877766

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=1.4e-12  Score=136.62  Aligned_cols=287  Identities=10%  Similarity=-0.045  Sum_probs=166.1

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeeecCCCcEEEEecC------CeEEEEeC
Q 013871            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRFSSDEAVACRMAT------NEIQFFDT   77 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~S~d~~~la~~~~------~~i~v~~~   77 (434)
                      .+|+|++++......+.....|.+.+...++...-+....   .+...+..++|||||++||...+      .+|++||+
T Consensus        75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence            5699999997764332222445555655554322222111   01123557899999999997621      48999999


Q ss_pred             CCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------CCCceEEEEEcCCCCCCCc----eeeeeecccc
Q 013871           78 TDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------GSPASVQIYACGKDLQSQP----LARRSFFRCS  143 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------~~~~~v~i~~~~~~~~~~~----i~~~~~~~~~  143 (434)
                      .+.....  ..+...+  ..++|||+ +..+++......        ..+..|.+|++.+   ++.    +.....+...
T Consensus       155 ~tg~~~~--~~~~~~~~~~~~~wspD-g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t---~~~~~~lv~~~~~~~~~  228 (695)
T 2bkl_A          155 DSGEWSK--VDVIEGGKYATPKWTPD-SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGT---EPSKDTVVHERTGDPTT  228 (695)
T ss_dssp             TTCCBCS--SCCBSCCTTCCCEECTT-SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTS---CGGGCEEEECCCCCTTC
T ss_pred             CCCCCcC--CcccCcccccceEEecC-CCEEEEEEecCCCCCccccCCCCCEEEEEECCC---CchhceEEEecCCCCEE
Confidence            8754310  1133333  68999999 455544433221        2345799999876   331    2121122245


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc--CCCeE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--MPASA  221 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~--~~~~v  221 (434)
                      ...+.|+|||++|++......        +...||+++..+.....+.. ....+....| |+|. |++.+..  .+.+|
T Consensus       229 ~~~~~~SpDG~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~-~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l  297 (695)
T 2bkl_A          229 FLQSDLSRDGKYLFVYILRGW--------SENDVYWKRPGEKDFRLLVK-GVGAKYEVHA-WKDR-FYVLTDEGAPRQRV  297 (695)
T ss_dssp             EEEEEECTTSCCEEEEEEETT--------TEEEEEEECTTCSSCEEEEE-CSSCCEEEEE-ETTE-EEEEECTTCTTCEE
T ss_pred             EEEEEECCCCCEEEEEEeCCC--------CceEEEEEcCCCCceEEeec-CCCceEEEEe-cCCc-EEEEECCCCCCCEE
Confidence            678899999999877543211        23457777654432233332 2345566667 7787 7665432  24689


Q ss_pred             EEEecccce---eEEe--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeCC---CceEEEECCC
Q 013871          222 TIFNKKCRP---ILEL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE---CSVTSEWSPD  290 (434)
Q Consensus       222 ~l~d~~~~~---~~~~--~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~~---~~~~~~wspd  290 (434)
                      .+||+....   ...+  +  ...+..+.|+ +++++++..   .+|..+||.++ +++.+..+..+   .+..++++||
T Consensus       298 ~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d  373 (695)
T 2bkl_A          298 FEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL---KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLED  373 (695)
T ss_dssp             EEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE---ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTT
T ss_pred             EEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCC
Confidence            999986432   1222  2  3446778888 566666655   33566666443 35455544433   2334889999


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      |..|+...+++.  .++.|++||+.+
T Consensus       374 ~~~l~~~~ss~~--~P~~v~~~d~~~  397 (695)
T 2bkl_A          374 LDDAYYVFTSFT--TPRQIYKTSVST  397 (695)
T ss_dssp             CSEEEEEEEETT--EEEEEEEEETTT
T ss_pred             CCEEEEEEcCCC--CCCEEEEEECCC
Confidence            987775544221  157899999854

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.53  E-value=1.7e-11  Score=124.60  Aligned_cols=301  Identities=13%  Similarity=0.062  Sum_probs=188.0

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC--CCCCcee
Q 013871            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT--DFPKGIL   85 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~--~~~~~~~   85 (434)
                      |.+.++++..     .++.|.++|..+++.+.++...    .....+.|||||++++.+. ++.|.+||+.  +..  ..
T Consensus       165 ~~~~~~V~~~-----~~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~--~v  233 (567)
T 1qks_A          165 LENLFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--TV  233 (567)
T ss_dssp             GGGEEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC--EE
T ss_pred             CCceEEEEeC-----CCCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc--Ee
Confidence            4344455444     6789999999999999888654    2333789999999888764 5799999985  432  33


Q ss_pred             eeeec-CCeeEEEEe----CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----------c-ceeEEEE
Q 013871           86 YRLRV-PGVAAFEVS----KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----------C-STVQLNW  149 (434)
Q Consensus        86 ~~~~~-~~v~~~~~s----p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----------~-~~~~~~w  149 (434)
                      .++.. .....+++|    |++ .++.+..    ..++.|.+++..+   .+++.......          . ....+..
T Consensus       234 ~~i~~G~~P~~ia~s~~~~pDG-k~l~v~n----~~~~~v~ViD~~t---~~~~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          234 AEIKIGSEARSIETSKMEGWED-KYAIAGA----YWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             EEEECCSEEEEEEECCSTTCTT-TEEEEEE----EETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             EEEecCCCCceeEEccccCCCC-CEEEEEE----ccCCeEEEEECCC---CcEEEEEeccccccccccccCCCceEEEEE
Confidence            44443 346789999    574 4443321    2346889999877   55555444221          1 2345666


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC  228 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~  228 (434)
                      ++++..+++..    ..++       .++.++..... .....+......+++.|+|||++|++.. ...++|.++|++.
T Consensus       306 s~~~~~~vv~~----~~~g-------~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~-~~sn~V~ViD~~t  373 (567)
T 1qks_A          306 SHYRPEFIVNV----KETG-------KILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA-NARNKLVVIDTKE  373 (567)
T ss_dssp             CSSSSEEEEEE----TTTT-------EEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE-GGGTEEEEEETTT
T ss_pred             cCCCCEEEEEe----cCCC-------eEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEe-CCCCeEEEEECCC
Confidence            77766544321    1122       24455433221 1111223345678999999999998854 4467999999976


Q ss_pred             ceeE-EeCC---cCe--eEE-EECCCCC-eEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCCC
Q 013871          229 RPIL-ELGS---GPY--NTV-RWNPKGK-FLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPDG  291 (434)
Q Consensus       229 ~~~~-~~~~---~~~--~~i-~~SP~g~-~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspdg  291 (434)
                      ..+. .+..   .+.  ..+ .++|++. ..+++..+  +++|.++|..+       .+.+.++...  ....+..+|||
T Consensus       374 ~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~  451 (567)
T 1qks_A          374 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNS  451 (567)
T ss_dssp             TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC
T ss_pred             CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCC
Confidence            5433 2222   121  122 3689855 44444433  36999999987       6777777654  33458899999


Q ss_pred             CEEEEEEc-CCceeeCCcEEEEeecCc-----e-e-eeee----------cccceeeEEEcCCCCCCCC
Q 013871          292 RYFMTATT-APRLQIDNGIKIFHHNGS-----L-F-FKKM----------FDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       292 ~~l~tas~-~prl~~D~~i~iw~~~g~-----~-~-~~~~----------~~~~~~~~w~p~~~~~~~~  342 (434)
                      +++.+... .|...+.++|.|+|....     . . ....          -..+.++.|.|++..++-.
T Consensus       452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s  520 (567)
T 1qks_A          452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFS  520 (567)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEE
Confidence            99998763 443334679999998543     1 1 1121          1357888899988876653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=6.7e-12  Score=119.02  Aligned_cols=254  Identities=9%  Similarity=0.052  Sum_probs=154.5

Q ss_pred             cceEEecCCCcEEEEEecCCC-------------------CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCc
Q 013871            2 LLLLTCLRVGLIIQTFQKSST-------------------PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEA   62 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~-------------------~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~   62 (434)
                      |.+|+|+|+|+++++......                   ..+++|.+||..+|+.+..+.....  .....+++++||+
T Consensus        26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~p~gia~d~~g~  103 (329)
T 3fvz_A           26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF--YLPHGLSIDTDGN  103 (329)
T ss_dssp             EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC--SSEEEEEECTTSC
T ss_pred             ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc--CCceEEEECCCCC
Confidence            678999999999987652100                   0124799999999998776543211  2333789999999


Q ss_pred             EEEEec-CCeEEEEeCCCCCCceeeee-----------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           63 VACRMA-TNEIQFFDTTDFPKGILYRL-----------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        63 ~la~~~-~~~i~v~~~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      ++++.. ++.|++|+...... ....+           +......++++|+.+.++..   +. .....|++|       
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~---d~-~~~~~I~~~-------  171 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS---DG-YCNSRIVQF-------  171 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE---EC-SSCCEEEEE-------
T ss_pred             EEEEECCCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE---eC-CCCCeEEEE-------
Confidence            777764 57999999754311 11111           12246677777732222211   10 011233333       


Q ss_pred             CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871          131 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       131 ~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~  210 (434)
                                         +++|..+..+...                     +..... ....-...+.++++|++..+
T Consensus       172 -------------------~~~g~~~~~~~~~---------------------g~~~~~-~~~~~~~p~gia~d~~~g~l  210 (329)
T 3fvz_A          172 -------------------SPSGKFVTQWGEE---------------------SSGSSP-RPGQFSVPHSLALVPHLDQL  210 (329)
T ss_dssp             -------------------CTTSCEEEEECEE---------------------CCSSSC-CTTEESCEEEEEEETTTTEE
T ss_pred             -------------------cCCCCEEEEeccC---------------------CCCCCC-CCcccCCCcEEEEECCCCEE
Confidence                               3334432221100                     000000 00001246889999995566


Q ss_pred             EEEEccCCCeEEEEecc-cceeEEe----CCcCeeEEEECCCCCeEEEEec----CCCCCeEEEEEccCCEEEEEee---
Q 013871          211 AVVYGFMPASATIFNKK-CRPILEL----GSGPYNTVRWNPKGKFLCLAGF----GNLPGDMAFWDYVDGKQLGTTR---  278 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~-~~~~~~~----~~~~~~~i~~SP~g~~l~~~~~----~~~~g~i~iwd~~~~~~i~~~~---  278 (434)
                      .+ +...++.|.+||.. +..+..+    .......++|+| |..++..+.    +.....|.+||..+++.+..+.   
T Consensus       211 ~v-~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~  288 (329)
T 3fvz_A          211 CV-ADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR  288 (329)
T ss_dssp             EE-EETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred             EE-EECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence            55 46667899999997 7766666    234567899999 544444331    1124589999999999888873   


Q ss_pred             CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          279 AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       279 ~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      .+  .+..++++|||..+++...      ++.|++|+.+|..
T Consensus       289 ~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~~~~  324 (329)
T 3fvz_A          289 KHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLTEKM  324 (329)
T ss_dssp             SCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEEECS
T ss_pred             CccCCeeEEEECCCCCEEEEECC------CCEEEEEeCCccc
Confidence            22  4566999999966666655      8999999998753

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=1.3e-12  Score=136.92  Aligned_cols=250  Identities=9%  Similarity=-0.002  Sum_probs=150.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-Ce---------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NE---------   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~---------   71 (434)
                      +.+++|||||++|+......+.++..|+|||+.+|+.+..-....   .....+.|||||+.|++... ..         
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~---~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG---GKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC---CTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc---ccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            467899999999998776556667899999999998641101111   11137899999999888743 33         


Q ss_pred             ----EEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           72 ----IQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        72 ----i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                          |.+|++.+..........    ...+..+.|||++ ..|++..... .....|.+++.+.   + ....+......
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~-~~~~~l~~~~~~~---~-~~~~l~~~~~~  273 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRG-WSENDVYWKRPGE---K-DFRLLVKGVGA  273 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEET-TTEEEEEEECTTC---S-SCEEEEECSSC
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCC-CCceEEEEEcCCC---C-ceEEeecCCCc
Confidence                999998764421111111    1357789999995 5554433221 1223555554433   2 33444444444


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCC-CCCeEEEEECcCCCEEEEEEccCCC
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRK-EGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~-~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      .....| ++|. +++.+.  .+.      +...|+.+++.+...   ..+.... ...+.+++|+ + ..+++ +...++
T Consensus       274 ~~~~~~-~~g~-l~~~s~--~~~------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~-~~~~dg  340 (695)
T 2bkl_A          274 KYEVHA-WKDR-FYVLTD--EGA------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSL-EYLKDA  340 (695)
T ss_dssp             CEEEEE-ETTE-EEEEEC--TTC------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEE-EEEETT
T ss_pred             eEEEEe-cCCc-EEEEEC--CCC------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEE-EEEECC
Confidence            555666 6777 655432  111      223577777654321   2222222 4467888998 4 44554 345566


Q ss_pred             eEEEE--ecccceeEEe--C-CcCeeEEEECCCCCeEEEEe-cCCCCCeEEEEEccCCEE
Q 013871          220 SATIF--NKKCRPILEL--G-SGPYNTVRWNPKGKFLCLAG-FGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       220 ~v~l~--d~~~~~~~~~--~-~~~~~~i~~SP~g~~l~~~~-~~~~~g~i~iwd~~~~~~  273 (434)
                      ..+||  ++.+.....+  + .+.+..+.++|+|+.|++.. ....+++|++||+.+++.
T Consensus       341 ~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          341 TSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            55554  6556555544  3 55677889999998666543 223467999999988753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.52  E-value=8.6e-12  Score=131.52  Aligned_cols=287  Identities=9%  Similarity=-0.019  Sum_probs=160.5

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcC---CCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEecC------CeEE
Q 013871            7 CLRVGLIIQTFQKSSTPQEKNVILWKTE---TGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMAT------NEIQ   73 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~---~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~~------~~i~   73 (434)
                      ++|||++++......+.....|.+.+..   .++. ..+...+    .+...+..++|||||++||+..+      .+|+
T Consensus       114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKG-RVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCC-EEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred             CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCC-EEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence            4699999997764322222344555544   4433 2221110    00013447899999999998743      2699


Q ss_pred             EEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC---------CCCceEEEEEcCCCCCCCc--eeeeeec
Q 013871           74 FFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK---------GSPASVQIYACGKDLQSQP--LARRSFF  140 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~---------~~~~~v~i~~~~~~~~~~~--i~~~~~~  140 (434)
                      +||+.+...   .......+  ..++|||+  ..+++......         +.+..|.+|++.+   ...  .......
T Consensus       193 v~dl~tg~~---~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt---~~~~~~lv~~~~  264 (741)
T 1yr2_A          193 FVGVADGKP---LADELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT---PQSADQPVFATP  264 (741)
T ss_dssp             EEETTTCCE---EEEEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTS---CGGGCEEEECCT
T ss_pred             EEECCCCCC---CCccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCC---CchhCEEEeccC
Confidence            999987543   22233333  57899998  44443322211         1255788999865   221  1111111


Q ss_pred             --ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--c-eeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871          141 --RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--H-EGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       141 --~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~-~~~v~l~~~~~i~~v~wspdg~~~av~~g  215 (434)
                        ......+.|+|||++|++......+       +...||++++.+.  . ...+... ...+... ++|+|+.|++.+.
T Consensus       265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~  335 (741)
T 1yr2_A          265 ELPKRGHGASVSSDGRWVVITSSEGTD-------PVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSG  335 (741)
T ss_dssp             TCTTCEEEEEECTTSCEEEEEEECTTC-------SCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCEEEEEEEccCC-------CcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEEC
Confidence              1235788999999998876532211       2335787777654  2 2222222 3334444 3499999998754


Q ss_pred             cC--CCeEEEEeccc--ceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-CCEEEEEeeC--C-CceE
Q 013871          216 FM--PASATIFNKKC--RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRA--E-CSVT  284 (434)
Q Consensus       216 ~~--~~~v~l~d~~~--~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-~~~~i~~~~~--~-~~~~  284 (434)
                      ..  ..+|.++|+..  .....+   +...+..+.|+ ++.++++..   .+|...||.++ +++.+..+..  . .+..
T Consensus       336 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~---~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~  411 (741)
T 1yr2_A          336 DGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI---HDAKSQVLAFDLDGKPAGAVSLPGIGSASG  411 (741)
T ss_dssp             TTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE---ETTEEEEEEEETTSCEEEECBCSSSCEEEE
T ss_pred             CCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE---ECCEEEEEEEeCCCCceeeccCCCCeEEEE
Confidence            32  34799999875  233333   23345567776 444555554   23455554433 3445554443  2 3445


Q ss_pred             EEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          285 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       285 ~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +.|+|||..|+...+++.  ..+.|++||+.+.
T Consensus       412 ~~~s~d~~~l~~~~ss~~--~P~~i~~~d~~tg  442 (741)
T 1yr2_A          412 LSGRPGDRHAYLSFSSFT--QPATVLALDPATA  442 (741)
T ss_dssp             EECCBTCSCEEEEEEETT--EEEEEEEEETTTT
T ss_pred             eecCCCCCEEEEEEcCCC--CCCEEEEEECCCC
Confidence            899999987664443211  1578999998553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.50  E-value=1.1e-11  Score=130.72  Aligned_cols=253  Identities=11%  Similarity=0.058  Sum_probs=152.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N----------   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~----------   70 (434)
                      +..++|||||++|+......+.+...|+|||+.+|+.+......    .....+.|||| +.|++... +          
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~----~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW----VKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE----EESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC----ceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            45789999999999877443333367999999999876542221    11226899999 88887642 2          


Q ss_pred             ----eEEEEeCCCCCCceeeeeec----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           71 ----EIQFFDTTDFPKGILYRLRV----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        71 ----~i~v~~~~~~~~~~~~~~~~----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                          .|.+|++.............    ..+..+.|||+ +..|++...........|.+|++.+.. ......+.....
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~l~~~~~  317 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD-GRWVVITSSEGTDPVNTVHVARVTNGK-IGPVTALIPDLK  317 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECTTCSCCEEEEEEEETTE-ECCCEEEECSSS
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC-CCEEEEEEEccCCCcceEEEEECCCCC-CcccEEecCCCC
Confidence                48899986543211111111    13788999999 556665544332235688899886510 021333333333


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      ..... |+++|+.|++.+..+  .      ....|+.+++.+.  .-..+.......+.+++|+  +..+++. ...++.
T Consensus       318 ~~~~~-~~~dg~~l~~~s~~~--~------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~-~~~dg~  385 (741)
T 1yr2_A          318 AQWDF-VDGVGDQLWFVSGDG--A------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFAS-YIHDAK  385 (741)
T ss_dssp             SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEE-EEETTE
T ss_pred             ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEE-EEECCE
Confidence            33333 458999988764321  1      1224777776552  1122222234456678887  4455553 445665


Q ss_pred             --EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEE
Q 013871          221 --ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       221 --v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~  273 (434)
                        +.++|+.+.....+   +.+.+..+.++|+|+.|++. ......++|++||+.+++.
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence              45556656655544   25667889999999866543 2223468999999998863

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.49  E-value=1.6e-12  Score=135.09  Aligned_cols=250  Identities=9%  Similarity=-0.021  Sum_probs=143.1

Q ss_pred             eEEec--CCCcE-EEEEecCCCCCCCcEEEEEcC--C-CcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC------
Q 013871            4 LLTCL--RVGLI-IQTFQKSSTPQEKNVILWKTE--T-GEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT------   69 (434)
Q Consensus         4 ~l~fS--P~g~~-L~t~~~~~~~~d~~v~iWd~~--~-g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~------   69 (434)
                      +..||  |||++ |+..+.    .+..|.+|++.  + ++ ...+.....  +...+..++|||||+.|++...      
T Consensus        81 ~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             cceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCC
Confidence            34454  99999 776541    24567777765  3 44 344433100  1133447899999999988742      


Q ss_pred             -----CeEEEEeCCC------CCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCC---CCceEEEEEcCCCCCC--C
Q 013871           70 -----NEIQFFDTTD------FPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKG---SPASVQIYACGKDLQS--Q  132 (434)
Q Consensus        70 -----~~i~v~~~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~---~~~~v~i~~~~~~~~~--~  132 (434)
                           .+|.+|++..      ... .... .....+..++|||+ +..|++......+   ....|.+|++...  +  .
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~  231 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEGTELKTARVTED--GRFA  231 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTT-SSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEE
T ss_pred             CCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCC-CCEEEEEECCCCCCCCCCcEEEEEEECCC--Cccc
Confidence                 3899999876      222 2122 22345677899999 5666554433222   1257999998721  3  1


Q ss_pred             ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCC--------CeEEEEE
Q 013871          133 PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG--------PVHDVQW  203 (434)
Q Consensus       133 ~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~--------~i~~v~w  203 (434)
                      ....+.. +......+.|+|||+ +++..+  .+.       ...||.++..+.....+.-....        .+..++|
T Consensus       232 ~~~~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~-------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~  301 (662)
T 3azo_A          232 DTRTLLGGPEEAIAQAEWAPDGS-LIVATD--RTG-------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAP  301 (662)
T ss_dssp             EEEEEEEETTBCEEEEEECTTSC-EEEEEC--TTS-------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEE
T ss_pred             ccEEeCCCCCceEcceEECCCCe-EEEEEC--CCC-------CeEEEEEECCCCceeecccccccccCccccccCceEeE
Confidence            3333333 356778899999999 655432  222       22477777644322222111111        1467899


Q ss_pred             CcCCCEEEEEEccCCCeEEEE--ecccceeEEe--CCcCeeEEEECCCCCeEEEE-ecCCCCCeEEEEEccCCEEEEE
Q 013871          204 SYSGSEFAVVYGFMPASATIF--NKKCRPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       204 spdg~~~av~~g~~~~~v~l~--d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~-~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      +|+++.++.  +.. +.+.||  |+.+..+..+  +...+..+ |+++|+.+++. +..+....|+++|+.+++....
T Consensus       302 ~~~~~~~~~--~~~-~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          302 LANGLIAVV--HGK-GAAVLGILDPESGELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             CTTSCEEEE--EBS-SSCEEEEEETTTTEEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             eCCCEEEEE--EEc-CccEEEEEECCCCcEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            999887664  344 666666  7766666665  34445544 26667654443 2222335677788877765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=2.8e-11  Score=111.89  Aligned_cols=231  Identities=12%  Similarity=0.131  Sum_probs=141.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC---cCCCCCCeeee-cCCCcEEEEec--CCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN---MTKTTWPSIRF-SSDEAVACRMA--TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~---~~~~~~~~~~~-S~d~~~la~~~--~~~i~v~   75 (434)
                      +.+|+++|+|+++++-.     .++.|.+||.. ++.+..+....   .+......+++ .+++.++++..  ++.|.+|
T Consensus        32 p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           32 PSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             EEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            46799999999888755     56889999976 77777664321   01122337788 57888777763  6799999


Q ss_pred             eCCCCCCceeeeee---cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           76 DTTDFPKGILYRLR---VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        76 ~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      +... .  ....+.   ...+..++++|++ ..+..   +.  ..+.|.+                          |+++
T Consensus       106 d~~g-~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~---~~--~~~~i~~--------------------------~~~~  150 (286)
T 1q7f_A          106 NQYG-Q--FVRKFGATILQHPRGVTVDNKG-RIIVV---EC--KVMRVII--------------------------FDQN  150 (286)
T ss_dssp             CTTS-C--EEEEECTTTCSCEEEEEECTTS-CEEEE---ET--TTTEEEE--------------------------ECTT
T ss_pred             CCCC-c--EEEEecCccCCCceEEEEeCCC-CEEEE---EC--CCCEEEE--------------------------EcCC
Confidence            8432 2  111221   1234555555553 11110   00  0112222                          2222


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL  232 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~  232 (434)
                      |+.+..                     +...         .....+..++++|+|+.++  +...++.|.+||..+..+.
T Consensus       151 g~~~~~---------------------~~~~---------~~~~~p~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~  198 (286)
T 1q7f_A          151 GNVLHK---------------------FGCS---------KHLEFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYLR  198 (286)
T ss_dssp             SCEEEE---------------------EECT---------TTCSSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEEE
T ss_pred             CCEEEE---------------------eCCC---------CccCCcEEEEECCCCCEEE--EECCCCEEEEEcCCCCEEE
Confidence            222110                     0000         1123578999999987444  4556789999999887777


Q ss_pred             EeCC----cCeeEEEECCCCCeEEEEecCCCCC-eEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCce
Q 013871          233 ELGS----GPYNTVRWNPKGKFLCLAGFGNLPG-DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       233 ~~~~----~~~~~i~~SP~g~~l~~~~~~~~~g-~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl  303 (434)
                      .+..    .....|+++|+|+++++..   .++ .|.+||.+ ++.+..+..+    .+..++++|||+.+++ ..    
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~---~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~----  269 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGEILIADN---HNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SK----  269 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEEC---SSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET----
T ss_pred             EEccCCccCCCcEEEECCCCCEEEEeC---CCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CC----
Confidence            6632    4568899999998776654   233 89999964 5555555432    3456999999986666 56    


Q ss_pred             eeCCcEEEEeecC
Q 013871          304 QIDNGIKIFHHNG  316 (434)
Q Consensus       304 ~~D~~i~iw~~~g  316 (434)
                        |+.|+||++..
T Consensus       270 --~~~v~v~~~~~  280 (286)
T 1q7f_A          270 --DYRLYIYRYVQ  280 (286)
T ss_dssp             --TTEEEEEECSC
T ss_pred             --CCeEEEEEccc
Confidence              99999999754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.49  E-value=1.6e-11  Score=128.41  Aligned_cols=250  Identities=11%  Similarity=0.082  Sum_probs=156.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C-----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T-----------   69 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----------   69 (434)
                      |..++|||||++|+......+.+...|+|||+.+|+.+......    .....+.|| ||+.|++.. +           
T Consensus       131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD----VKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE----EESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC----ceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            45679999999999876555555678999999999876542221    112267999 999888774 3           


Q ss_pred             --CeEEEEeCCCCCCce--eeeeec---CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc
Q 013871           70 --NEIQFFDTTDFPKGI--LYRLRV---PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC  142 (434)
Q Consensus        70 --~~i~v~~~~~~~~~~--~~~~~~---~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~  142 (434)
                        ..|.+|++.......  ......   ..+.++.|||+ +..+++... .......+.++++.+.  ......+.....
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpD-g~~l~~~~~-~~~~~~~i~~~d~~~~--~~~~~~l~~~~~  281 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED-DRFLLISAA-NSTSGNRLYVKDLSQE--NAPLLTVQGDLD  281 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTT-SCEEEEEEE-SSSSCCEEEEEETTST--TCCCEEEECSSS
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCC-CCEEEEEEc-cCCCCcEEEEEECCCC--CCceEEEeCCCC
Confidence              248999987643211  111111   23678899999 455544433 2334468899998652  223334443333


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      ..... |+++|..+++.+..+  .      ....|+.+++.+...   ..+. .+...+.  .|+|+++.+++.+. .++
T Consensus       282 ~~~~~-~~~~g~~l~~~t~~~--~------~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~-~~g  348 (693)
T 3iuj_A          282 ADVSL-VDNKGSTLYLLTNRD--A------PNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYM-VDA  348 (693)
T ss_dssp             SCEEE-EEEETTEEEEEECTT--C------TTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEE-ETT
T ss_pred             ceEEE-EeccCCEEEEEECCC--C------CCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEE-ECC
Confidence            33333 788899988765422  1      123477777665422   2222 2233333  89999999987543 344


Q ss_pred             --eEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEE
Q 013871          220 --SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       220 --~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~-~~~g~i~iwd~~~~~~  273 (434)
                        .|.+||+++.....+   +.+.+..+.++|+++.|++...+ ...+.|+.||+.+++.
T Consensus       349 ~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          349 TARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             eeEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence              788999987666555   23456677889999866665322 3468999999987753

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=3.5e-10  Score=109.07  Aligned_cols=277  Identities=8%  Similarity=0.007  Sum_probs=163.2

Q ss_pred             EecCCCcEEEEEecCCCCCCC--cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013871            6 TCLRVGLIIQTFQKSSTPQEK--NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~--~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      ..+|+++++......  ..+.  .|.++|..+++.+.++...     ..+.+++||||++++...           ++.|
T Consensus        27 ~~~~~~~~~yv~~~~--~~~~~~~v~v~D~~t~~~~~~i~~g-----~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v   99 (373)
T 2mad_H           27 APGADGRRSYINLPA--HHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             cCCCCCCEEEEeCCc--ccCCccEEEEEECCCCeEEEEecCC-----CCCCeEECCCCCEEEEEeccccccccCCCCCeE
Confidence            356889887765521  0111  8899999999988777543     223789999999888774           4689


Q ss_pred             EEEeCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeeccc
Q 013871           73 QFFDTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRC  142 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~  142 (434)
                      .+||......  ...+..         ..-..+.|||++ ..+.+...   .....|.+++ .+   ++.+.. ..... 
T Consensus       100 ~viD~~t~~~--~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~---~~~~~v~viD-~t---~~~~~~~i~~~~-  168 (373)
T 2mad_H          100 EVFDPVTFLP--IADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQF---AAGPAVGLVV-QG---GSSDDQLLSSPT-  168 (373)
T ss_pred             EEEECCCCcE--EEEEECCCccccccCCCccceEECCCC-CEEEEEec---CCCCeEEEEE-CC---CCEEeEEcCCCc-
Confidence            9999876543  222322         224578999994 44433221   1135788999 76   555544 32211 


Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec----CCCCCe-EEEEECcCCCEEEEEEccC
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPV-HDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i-~~v~wspdg~~~av~~g~~  217 (434)
                         ++...++|...++....  |.         .+..++..+........    ....++ ....+.+++..+++++  .
T Consensus       169 ---~~~~~~~~~~~~~~~~~--dg---------~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~  232 (373)
T 2mad_H          169 ---CYHIHPGAPSTFYLLCA--QG---------GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV--Y  232 (373)
T ss_pred             ---eEEEEeCCCceEEEEcC--CC---------CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc--C
Confidence               12333444443322111  11         12222221111101100    112232 2356777777766543  3


Q ss_pred             CCeEEEEecccce---eEEe--C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013871          218 PASATIFNKKCRP---ILEL--G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       218 ~~~v~l~d~~~~~---~~~~--~----------~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~  275 (434)
                      .+.+.+.|+....   +..+  .          ......+.++|+|+.+.++....       ..+.|.++|..+++.+.
T Consensus       233 ~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~  312 (373)
T 2mad_H          233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE
Confidence            5688888885432   1111  1          12234478999999777764210       13589999999999988


Q ss_pred             EeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEeec-Cceeee
Q 013871          276 TTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       276 ~~~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~~-g~~~~~  321 (434)
                      .+... ....++|+|||+ .++++...     ++.|.++|.. ++.+..
T Consensus       313 ~i~~g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          313 QISLGHDVDAISVAQDGGPDLYALSAG-----TEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCcCeEEECCCCCeEEEEEcCC-----CCeEEEEECCCCCEEee
Confidence            88654 577799999999 66666532     8999999985 455443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=1.9e-10  Score=112.16  Aligned_cols=288  Identities=8%  Similarity=0.005  Sum_probs=174.4

Q ss_pred             cCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEe
Q 013871            8 LRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFD   76 (434)
Q Consensus         8 SP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~   76 (434)
                      .|+++++...........+.|.+.|+.+++.+.++....     .+.+.+|||++++..+.           ++.|.++|
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-----~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-----LPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-----CCceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            367887776662211111689999999999999987653     23789999999777653           46899999


Q ss_pred             CCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----
Q 013871           77 TTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----  142 (434)
Q Consensus        77 ~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----  142 (434)
                      ..+...  ...+.+         .....+.++|++ .++.+...   ...+.|.+.|+.+   .+.+..+.....     
T Consensus       156 ~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~---~~~~~VsVID~~t---~kvv~~I~v~g~~~~~p  226 (426)
T 3c75_H          156 PVTFLP--IADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQF---SPAPAVGVVDLEG---KTFDRMLDVPDCYHIFP  226 (426)
T ss_dssp             TTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEEE
T ss_pred             CCCCcE--EEEEECCCccccccCCCcceEEEcCCC-CEEEEEec---CCCCeEEEEECCC---CeEEEEEEcCCceeecc
Confidence            988653  233333         234578999994 44333211   1246799999987   566655544221     


Q ss_pred             --ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCC
Q 013871          143 --STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       143 --~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i-~~v~wspdg~~~av~~g~~~~  219 (434)
                        ...-+.++++|+.+.+..     ..++.      .... .     ..+.+. ..++ ..+.+++++..++++. . .+
T Consensus       227 ~g~~~~v~~~~dG~~~~V~~-----~~~~v------~~~~-~-----~~~~v~-~~p~~~~~~~~~dg~~~~~~s-~-~g  286 (426)
T 3c75_H          227 ASPTVFYMNCRDGSLARVDF-----ADGET------KVTN-T-----EVFHTE-DELLINHPAFSLRSGRLVWPT-Y-TG  286 (426)
T ss_dssp             EETTEEEEEETTSSEEEEEC-----CTTCC------EEEE-C-----CCCSCT-TSCBCSCCEECTTTCEEEEEB-T-TS
T ss_pred             CCCcEEEEEcCCCCEEEEEC-----CCCcE------EEEe-e-----eeeccC-CCceeeEeeecCCCCEEEEEe-C-CC
Confidence              111234455555433321     01110      0000 0     011111 1222 2467899999888753 3 56


Q ss_pred             eEEEEecccceeEEeC---------------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013871          220 SATIFNKKCRPILELG---------------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~~---------------~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~  277 (434)
                      .+.+.|.....+....               ......++++|+|+.+.++....       ..+.|.++|+.+++.+..+
T Consensus       287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I  366 (426)
T 3c75_H          287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI  366 (426)
T ss_dssp             EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE
Confidence            8999998644322111               11223479999999777653210       1247999999999998888


Q ss_pred             eCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeee-ecccceeeEEEc
Q 013871          278 RAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKP  334 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~-~g~~~~~~-~~~~~~~~~w~p  334 (434)
                      ... ....++|+|||+ +++++...     ++.|.|+|. +++.+... ....-..+...|
T Consensus       367 ~vg~~P~gia~spDg~~~lyv~n~~-----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~  422 (426)
T 3c75_H          367 ELGHEIDSINVSQDAEPLLYALSAG-----TQTLHIYDAATGEELRSVDQLGRGPQIITTH  422 (426)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCSSSCCEEECC
T ss_pred             ECCCCcCeEEEccCCCEEEEEEcCC-----CCeEEEEECCCCCEEEEecCCCCCCcEEEcC
Confidence            654 467799999999 88887743     899999998 45555553 333333333333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.38  E-value=3.7e-10  Score=108.31  Aligned_cols=293  Identities=10%  Similarity=0.018  Sum_probs=177.0

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      .....|+|+.|..........++.|.+.|..+++.+.++....   .  +.+.+||||++++.+.           ++.|
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~--P~va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---L--PNPVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---S--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---C--CcEEECCCCCEEEEEcccccccccCCCCCEE
Confidence            3457899998887763211125789999999999999887643   2  3589999999876653           4689


Q ss_pred             EEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-
Q 013871           73 QFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-  142 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-  142 (434)
                      .+||..+...  ...+...         .-..+.++|++ ..+.+...   ...+.|.++|+.+   .+.+.+...... 
T Consensus       112 sviD~~t~~v--~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~---~~~~~VsVID~~t---~~vv~tI~v~g~~  182 (386)
T 3sjl_D          112 EVFDPVTLLP--TADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCY  182 (386)
T ss_dssp             EEECTTTCCE--EEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEE
T ss_pred             EEEECCCCeE--EEEEECCCccccccCCCCceEEEcCCC-CEEEEEEc---CCCCeEEEEECCC---CcEEEEEECCCcc
Confidence            9999988653  2333322         35568999995 44333211   1236899999988   666666543211 


Q ss_pred             ------ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeE-EEEEC-cCCCEEEEEE
Q 013871          143 ------STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWS-YSGSEFAVVY  214 (434)
Q Consensus       143 ------~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~-~v~ws-pdg~~~av~~  214 (434)
                            ...-+..++||+.+.+.    .+..++.      +   ...   ...+... ..++. ...|. ++|+.+.+  
T Consensus       183 ~~~P~g~~~~~~~~~DG~~~~v~----~~~~g~v------~---~~~---~~~~~~~-~~~~~~~~~~~~~dG~~~~v--  243 (386)
T 3sjl_D          183 HIFPTAPDTFFMHCRDGSLAKVA----FGTEGTP------E---ITH---TEVFHPE-DEFLINHPAYSQKAGRLVWP--  243 (386)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEE----CCSSSCC------E---EEE---CCCCSCT-TSCBCSCCEEETTTTEEEEE--
T ss_pred             eeecCCCceeEEECCCCCEEEEE----CCCCCeE------E---Eee---cceeccc-cccccccceeEcCCCcEEEE--
Confidence                  11112455666644332    1111111      0   000   0011111 23332 24664 67755443  


Q ss_pred             ccCCCeEEEEecccceeEEe---------------CCcCeeEEEECCCCCeEEEEecC----C---CCCeEEEEEccCCE
Q 013871          215 GFMPASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFG----N---LPGDMAFWDYVDGK  272 (434)
Q Consensus       215 g~~~~~v~l~d~~~~~~~~~---------------~~~~~~~i~~SP~g~~l~~~~~~----~---~~g~i~iwd~~~~~  272 (434)
                      .+ .+++.++|+.+......               ..+....++++|+++.+.++...    .   -...|.++|+++++
T Consensus       244 s~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          244 TY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             BT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             eC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence            22 57999999865432111               11233458889999987776421    0   12479999999999


Q ss_pred             EEEEeeCC-CceEEEECCCCC-EEEEEEcCCceeeCCcEEEEee-cCceeeeeec-ccceeeEEEcC
Q 013871          273 QLGTTRAE-CSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF-DKLFQAEWKPV  335 (434)
Q Consensus       273 ~i~~~~~~-~~~~~~wspdg~-~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~-~~~~~~~w~p~  335 (434)
                      .+..+.-. .+..|++||||+ +|+++...     ++.|.++|. +++.+..... ..-.++.+.++
T Consensus       323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~-----~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          323 RLAKFEMGHEIDSINVSQDEKPLLYALSTG-----DKTLYIHDAESGEELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEEEEEEECEEEECSSSSCEEEEEETT-----TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred             EEEEEECCCCcceEEECCCCCeEEEEEcCC-----CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence            88887654 556799999997 66665442     899999998 6666665543 23444555543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.38  E-value=9.9e-10  Score=103.69  Aligned_cols=243  Identities=10%  Similarity=-0.000  Sum_probs=141.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-----CeEEEEe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-----NEIQFFD   76 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-----~~i~v~~   76 (434)
                      +.+++|+|+|+.+++..     .++.|.+||..+++....+....   ..+..+.|++||++++....     +.|.+|+
T Consensus        47 ~~~~~~~~~g~l~~~~~-----~~~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d  118 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDV-----FEGNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  118 (333)
T ss_dssp             EEEEEECTTSCEEEEET-----TTCEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             ccCcEECCCCCEEEEEC-----CCCEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence            35789999999776655     56889999998887644332221   44558999999998887654     4899999


Q ss_pred             CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      ...........  .....+..+.++|++...++.  ...........||.+...  ...+............+.|+|+|+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~--~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD--FRGYSTNPLGGVYYVSPD--FRTVTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEE--CCCBTTBCCEEEEEECTT--SCCEEEEEEEESSEEEEEECTTSS
T ss_pred             CCCCEEEEEEccCccCCcccceEECCCCCEEEEe--ccccccCCCceEEEEeCC--CCEEEEeecCCCcccceEECCCCC
Confidence            87643211111  112357889999985322221  110011123355555431  122222222222456789999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeC--Cccee----e--eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTHEG----L--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~~~----~--v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      .|++....           ...|+.++..  +....    .  ..+.....+..++++++|+.++  +...++.|.+||.
T Consensus       195 ~l~v~~~~-----------~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v--~~~~~~~v~~~d~  261 (333)
T 2dg1_A          195 VLWVTETT-----------ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYV--AMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEEEEGG-----------GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEE--EEETTTEEEEECT
T ss_pred             EEEEEeCC-----------CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEE--EEcCCCEEEEECC
Confidence            87664211           1124445442  21111    1  1111123567899999998665  3444679999999


Q ss_pred             ccceeEEeC--Cc------CeeEEEECCCCCeEEEEecCC---CCCeEEEEEcc
Q 013871          227 KCRPILELG--SG------PYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYV  269 (434)
Q Consensus       227 ~~~~~~~~~--~~------~~~~i~~SP~g~~l~~~~~~~---~~g~i~iwd~~  269 (434)
                      ++..+..+.  ..      .+..++|+|||+.|++++.+.   ..|.|+-++..
T Consensus       262 ~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          262 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            776665552  22      578899999998777665331   12345555543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.33  E-value=2.5e-10  Score=119.31  Aligned_cols=247  Identities=9%  Similarity=0.008  Sum_probs=149.9

Q ss_pred             CCCeeeecCCCcEEEEecC------CeEEEEeCCCCCCceeeeeecCCe--eEEEEeCCCCCeEEEEecCCC--------
Q 013871           51 TWPSIRFSSDEAVACRMAT------NEIQFFDTTDFPKGILYRLRVPGV--AAFEVSKAPGSHVAVFVPESK--------  114 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~ia~~~~~~~--------  114 (434)
                      .+..++|||||++||.+.+      .+|++||+.+...   .....+++  ..++|+ | +..|++......        
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---~~~~~~~~k~~~~~Ws-D-g~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---LETPLKDVKFSGISWL-G-NEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---EEEEEEEEESCCCEEE-T-TTEEEEEESSCCC-------
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---CccccCCceeccEEEe-C-CCEEEEEEecCccccccccc
Confidence            3446799999999997631      3799999987542   23344444  578999 7 555655443322        


Q ss_pred             CCCceEEEEEcCCCCCCC--ceeeeee-cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871          115 GSPASVQIYACGKDLQSQ--PLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~--~i~~~~~-~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                      +.+..|.+|++.+.. ..  .+..... +......+.|+|||++|++.......        ...+|++++.+.......
T Consensus       205 ~~~~~v~~~~lgt~~-~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~--------~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQ-EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS--------GNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CCCCEEEEEETTSCG-GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS--------CCEEEEEETTSTTCCCEE
T ss_pred             CCCcEEEEEECCCCc-ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC--------CcEEEEEECCCCCCceEE
Confidence            456689999986521 11  1221111 22235678999999998775432211        125788876554222222


Q ss_pred             cC-CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccccee---EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          192 LR-KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKCRPI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       192 l~-~~~~i~~v~wspdg~~~av~~g~~--~~~v~l~d~~~~~~---~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      +. ........ |+++|..|++.+...  ..+|..+|+.....   ..+  +...+.  .|+|+|++|++....+....|
T Consensus       276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence            22 23333444 888999998876442  25888899864321   333  333333  999999999887754433479


Q ss_pred             EEEEccCCEEEEEee--CC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          264 AFWDYVDGKQLGTTR--AE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~--~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ++||++.+.. ..+.  .. .+..+.++||+..|+....++.  .-..+..||+.+.
T Consensus       353 ~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~--tP~~l~~~d~~~g  406 (693)
T 3iuj_A          353 EQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYA--QPPTLYRFEPKSG  406 (693)
T ss_dssp             EEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSS--SCCEEEEECTTTC
T ss_pred             EEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCC--CCCEEEEEECCCC
Confidence            9999886543 3332  22 3344788999988777665211  1367888887543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=5e-09  Score=100.96  Aligned_cols=245  Identities=9%  Similarity=-0.003  Sum_probs=142.7

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-CcC---CCCCCeeeecCCCcEEEEec---CCe
Q 013871            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NMT---KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~~---~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .++|||||++|.......     +..++.|.+||+.+++.+.++... ...   ...-..+.|||||++|+...   +++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            589999999999876321     123577999999999888776542 000   01112689999999998763   368


Q ss_pred             EEEEeCCCCCCceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee---ecccce---
Q 013871           72 IQFFDTTDFPKGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS---FFRCST---  144 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~---~~~~~~---  144 (434)
                      |.++| .....  ... +..++.  +.+.|++...+....     .++.+.+++. .   +..+....   .+ ...   
T Consensus       150 v~viD-~t~~~--~~~~i~~~~~--~~~~~~~~~~~~~~~-----~dg~~~~vd~-~---g~~~~~~~~~~~~-~~~~p~  214 (373)
T 2mad_H          150 VGLVV-QGGSS--DDQLLSSPTC--YHIHPGAPSTFYLLC-----AQGGLAKTDH-A---GGAAGAGLVGAML-TAAQNL  214 (373)
T ss_pred             EEEEE-CCCCE--EeEEcCCCce--EEEEeCCCceEEEEc-----CCCCEEEEEC-C---CcEEEEEeccccc-cCCcce
Confidence            99999 76432  333 443332  445555433332222     2345666666 4   33332111   11 111   


Q ss_pred             -eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee---eeecC---------CCCCeEEEEECcCCCEEE
Q 013871          145 -VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPLR---------KEGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       145 -~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~---~v~l~---------~~~~i~~v~wspdg~~~a  211 (434)
                       ....+.+++..+++...     .     +  .++.++..+....   .+.+.         .......++++||++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~-----~-----~--~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          215 LTQPAQANKSGRIVWPVY-----S-----G--KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eecceeEecCCEEEEEcC-----C-----c--eEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence             11234445554443321     0     1  2455544332111   11110         023345688999999888


Q ss_pred             EEEcc--------CCCeEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          212 VVYGF--------MPASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       212 v~~g~--------~~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +....        ..+.|.++|++... +..+. ......+.|+|||+ +++++..+  ++.|.++|..+++.+..+
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEeee
Confidence            75332        13489999997554 45553 33478999999999 66665533  369999999999988773

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.32  E-value=5e-10  Score=107.36  Aligned_cols=259  Identities=11%  Similarity=0.095  Sum_probs=146.8

Q ss_pred             EEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCc-----CCCCCCeeeecCCCcEEEEec---CCe
Q 013871            5 LTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNM-----TKTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~-----~~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      |.|||||++|.....+.     +..++.|.+||+.+++.+.++.....     ....+ .+.|||||+++....   ++.
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTSSEEEEEECSSSCE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCCCEEEEEEcCCCCe
Confidence            89999999987765211     11246799999999999888764310     00233 789999999877663   479


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccce----eE
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCST----VQ  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~~----~~  146 (434)
                      |.++|+....  ...++..++...  +.|.+...+....+     ++.+-+.++...  +..+... ..+..+.    ..
T Consensus       162 VsVID~~t~~--vv~tI~v~g~~~--~~P~g~~~~~~~~~-----DG~~~~v~~~~~--g~v~~~~~~~~~~~~~~~~~~  230 (386)
T 3sjl_D          162 VGVVDLEGKA--FKRMLDVPDCYH--IFPTAPDTFFMHCR-----DGSLAKVAFGTE--GTPEITHTEVFHPEDEFLINH  230 (386)
T ss_dssp             EEEEETTTTE--EEEEEECCSEEE--EEEEETTEEEEEET-----TSCEEEEECCSS--SCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEECCCCc--EEEEEECCCcce--eecCCCceeEEECC-----CCCEEEEECCCC--CeEEEeecceecccccccccc
Confidence            9999998854  334455444321  11221211111111     122333333220  1111111 1111110    01


Q ss_pred             EEE-CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eec-C--------CCCCeEEEEECcCCCEEEEE
Q 013871          147 LNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPL-R--------KEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       147 ~~w-s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l-~--------~~~~i~~v~wspdg~~~av~  213 (434)
                      ..| .++|+.+ +.+.     .     |  .+|.++..+.....   +.+ .        ..+....++++|+++++.+.
T Consensus       231 ~~~~~~dG~~~-~vs~-----~-----g--~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~  297 (386)
T 3sjl_D          231 PAYSQKAGRLV-WPTY-----T-----G--KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  297 (386)
T ss_dssp             CEEETTTTEEE-EEBT-----T-----S--EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ceeEcCCCcEE-EEeC-----C-----C--EEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence            244 3566433 2211     1     1  35666654432111   110 0        02344457889999999886


Q ss_pred             EccC--------CCeEEEEecccce-eEEeC-CcCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCC-C
Q 013871          214 YGFM--------PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-C  281 (434)
Q Consensus       214 ~g~~--------~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~  281 (434)
                      ....        .+.|.++|+++.. +..+. ......|.+||||+ +|+++..  .+++|.++|..+++.+.++... .
T Consensus       298 ~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~k~~~~i~~~~~  375 (386)
T 3sjl_D          298 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVNQLGH  375 (386)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTCCEEEEECCCCS
T ss_pred             eccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCCcEEEEecCCCC
Confidence            5321        2479999997554 44443 34567999999998 5665543  3479999999999999988765 5


Q ss_pred             ceEEEECCC
Q 013871          282 SVTSEWSPD  290 (434)
Q Consensus       282 ~~~~~wspd  290 (434)
                      ...+.+++|
T Consensus       376 p~~l~~s~d  384 (386)
T 3sjl_D          376 GPQVITTAD  384 (386)
T ss_dssp             SCCEEEECC
T ss_pred             CceeEECCc
Confidence            556777877

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.31  E-value=4.7e-09  Score=96.79  Aligned_cols=216  Identities=11%  Similarity=0.068  Sum_probs=140.2

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      .|++|++.+     .|+.|.+||.++|+.+.++.....  .....+.++|||++++ ..++.|..||. +..  ...++.
T Consensus         4 ~~~~lv~~~-----~~~~v~~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~--~~W~~~   72 (276)
T 3no2_A            4 PQHLLVGGS-----GWNKIAIINKDTKEIVWEYPLEKG--WECNSVAATKAGEILF-SYSKGAKMITR-DGR--ELWNIA   72 (276)
T ss_dssp             CCEEEEECT-----TCSEEEEEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEE-ECBSEEEEECT-TSC--EEEEEE
T ss_pred             CCcEEEeeC-----CCCEEEEEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEE-eCCCCEEEECC-CCC--EEEEEc
Confidence            468888866     789999999999999999876431  2345889999999998 55678888887 432  223333


Q ss_pred             cC---CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013871           90 VP---GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        90 ~~---~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      ..   .+.++.+.|++..+++. .               .               ....-+.++++|+.+.-        
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~-~---------------~---------------~~~~v~~vd~~Gk~l~~--------  113 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAW-C---------------G---------------HPSTILEVNMKGEVLSK--------  113 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEE-E---------------S---------------TTEEEEEECTTSCEEEE--------
T ss_pred             CCCCccccccEECCCCCEEEEe-c---------------C---------------CCCEEEEEeCCCCEEEE--------
Confidence            21   24444555542211110 0               0               00112344566654321        


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-CcCeeEEEEC
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-SGPYNTVRWN  245 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-~~~~~~i~~S  245 (434)
                                   +...+...     ......+.++..++|+.++  +...++.|..||.+++.+.++. ......+...
T Consensus       114 -------------~~~~~~~~-----~~~~~~~~v~~~~~G~~lv--~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~  173 (276)
T 3no2_A          114 -------------TEFETGIE-----RPHAQFRQINKNKKGNYLV--PLFATSEVREIAPNGQLLNSVKLSGTPFSSAFL  173 (276)
T ss_dssp             -------------EEECCSCS-----SGGGSCSCCEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECSSCCCEEEEC
T ss_pred             -------------EeccCCCC-----cccccccCceECCCCCEEE--EecCCCEEEEECCCCCEEEEEECCCCccceeEc
Confidence                         11111000     0012344567889999887  4566789999999988888774 3455678889


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------CceEEEECCCCCEEEEEE
Q 013871          246 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------~~~~~~wspdg~~l~tas  298 (434)
                      ++|++++++..   ++.|..+|.++++.+..+...        .+..+...++|..+++..
T Consensus       174 ~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          174 DNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             TTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            99998887663   358999999999998887532        144588899999988875

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.30  E-value=2.1e-09  Score=99.74  Aligned_cols=223  Identities=12%  Similarity=0.056  Sum_probs=136.4

Q ss_pred             eeeecCCCc-EEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           54 SIRFSSDEA-VACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~-~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.|+||++ ++++. .++.|.+|+....  ..........+..++++|++. +++. .    .....|.+|+..+   +
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~-~----~~~~~i~~~d~~~---g  100 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIAC-S----HGLRRLERQREPG---G  100 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEE-E----TTTTEEEEECSTT---C
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEE-e----cCCCeEEEEcCCC---C
Confidence            789999998 45544 4679999998764  233333445688999999853 3322 1    1235688888755   3


Q ss_pred             Cceeeeeecc----cceeEEEECCCCCeEEEEEEec--c-cc----cCceeecceeEEEEeeCCcceeeeecCCCCCeEE
Q 013871          132 QPLARRSFFR----CSTVQLNWNRGSTGLLAVAQSD--V-DK----TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHD  200 (434)
Q Consensus       132 ~~i~~~~~~~----~~~~~~~ws~~G~~l~~~~~~~--~-d~----~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~  200 (434)
                      +.........    .....+.++++|+.+ + ++..  . +.    ....-.+...||.++..+.  ...........+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~i~~d~~G~l~-v-td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~~~~~~~~~~~g  176 (296)
T 3e5z_A          101 EWESIADSFEGKKLNSPNDVCLAPDGSLW-F-SDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT--LSAPIRDRVKPNG  176 (296)
T ss_dssp             CEEEEECEETTEECCCCCCEEECTTSCEE-E-EECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC--EEEEECCCSSEEE
T ss_pred             cEEEEeeccCCCCCCCCCCEEECCCCCEE-E-ECCccccccccccccccccCCCcEEEEECCCCC--EEEeecCCCCCcc
Confidence            3221111111    123468899999743 2 2110  0 00    0000001225777765532  1222233456789


Q ss_pred             EEECcCCCEEEEEEccCCCeEEEEecc--cce---eEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          201 VQWSYSGSEFAVVYGFMPASATIFNKK--CRP---ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       201 v~wspdg~~~av~~g~~~~~v~l~d~~--~~~---~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ++|+|||+.+ + +...++.|.+||+.  +..   ...+  +.+....++++++|++++..  +   +.|.+||.+ ++.
T Consensus       177 i~~s~dg~~l-v-~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~---~~v~~~~~~-g~~  248 (296)
T 3e5z_A          177 LAFLPSGNLL-V-SDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G---DGVHVLTPD-GDE  248 (296)
T ss_dssp             EEECTTSCEE-E-EETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T---TEEEEECTT-SCE
T ss_pred             EEECCCCCEE-E-EeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C---CeEEEECCC-CCE
Confidence            9999999998 5 46667899999985  221   1122  34456789999999966654  3   589999986 666


Q ss_pred             EEEeeCC-CceEEEE-CCCCCEEEEEEc
Q 013871          274 LGTTRAE-CSVTSEW-SPDGRYFMTATT  299 (434)
Q Consensus       274 i~~~~~~-~~~~~~w-spdg~~l~tas~  299 (434)
                      +..+..+ .+..++| +|||+.|++++.
T Consensus       249 ~~~~~~~~~~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          249 LGRVLTPQTTSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred             EEEEECCCCceeEEEECCCCCEEEEEcC
Confidence            6666543 3667899 699999998885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.30  E-value=1.9e-09  Score=101.96  Aligned_cols=269  Identities=9%  Similarity=-0.017  Sum_probs=160.3

Q ss_pred             CCCCCcEEEEEcCCCcEEEEEeec-C--cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-cCCeeEEE
Q 013871           22 TPQEKNVILWKTETGEAVYQLFQK-N--MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-VPGVAAFE   97 (434)
Q Consensus        22 ~~~d~~v~iWd~~~g~~~~~~~~~-~--~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~   97 (434)
                      +..++.|.+||..+++.+..+... +  ........+.+..+.-|++...++.|.+||..+....  .++. ......++
T Consensus        13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~--~~i~~~~~p~~i~   90 (328)
T 3dsm_A           13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEV--GRITGFTSPRYIH   90 (328)
T ss_dssp             TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEE--EEEECCSSEEEEE
T ss_pred             CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEE--EEcCCCCCCcEEE
Confidence            345789999999999876544211 0  0001112456643333333335689999999875532  2232 45678889


Q ss_pred             EeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCeEEEEEEecccccCceee
Q 013871           98 VSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY  172 (434)
Q Consensus        98 ~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~  172 (434)
                      ++|++  .+  |+..  ...+.|.+++..+   .+.+.......     .....+.+  ++..|++.. ..         
T Consensus        91 ~~~~g--~l--yv~~--~~~~~v~~iD~~t---~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~-~~---------  149 (328)
T 3dsm_A           91 FLSDE--KA--YVTQ--IWDYRIFIINPKT---YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC-WS---------  149 (328)
T ss_dssp             EEETT--EE--EEEE--BSCSEEEEEETTT---TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE-CT---------
T ss_pred             EeCCC--eE--EEEE--CCCCeEEEEECCC---CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc-CC---------
Confidence            98874  22  2221  1246889999876   44444443322     02334555  455655431 10         


Q ss_pred             cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccC--------CCeEEEEecccceeE-Ee--C-CcCe
Q 013871          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFM--------PASATIFNKKCRPIL-EL--G-SGPY  239 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~--------~~~v~l~d~~~~~~~-~~--~-~~~~  239 (434)
                      ....+..++..... ...+.+  ....+.++++|+|+.+++..+..        .+.|.++|.+...+. .+  . ....
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCEEEEEECCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence            02246666654432 223333  33457899999998655432221        268999999754433 33  2 2357


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE--ee--CCCceEEEECCCCCEEEEEE----cCCceeeCCcEEE
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT--TR--AECSVTSEWSPDGRYFMTAT----TAPRLQIDNGIKI  311 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~--~~--~~~~~~~~wspdg~~l~tas----~~prl~~D~~i~i  311 (434)
                      +.++|+|+|++|.++.     +.|.+||..+++....  +.  ...+..++++|++..|.++.    ..     ++.|.+
T Consensus       228 ~~la~~~d~~~lyv~~-----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v  297 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWIN-----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYR  297 (328)
T ss_dssp             EEEEECTTSCEEEEES-----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEE
T ss_pred             eeEEEecCCCEEEEEc-----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEE
Confidence            8999999999988875     2799999988765321  12  23456699999555555554    21     789999


Q ss_pred             EeecCceeeeeecc
Q 013871          312 FHHNGSLFFKKMFD  325 (434)
Q Consensus       312 w~~~g~~~~~~~~~  325 (434)
                      |+.+|+++......
T Consensus       298 ~d~~g~~~~~i~~G  311 (328)
T 3dsm_A          298 YSPQGKLIDEFYVG  311 (328)
T ss_dssp             ECTTCCEEEEEEEE
T ss_pred             ECCCCCEEEEEEec
Confidence            99999888766443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.28  E-value=3.2e-09  Score=96.81  Aligned_cols=234  Identities=7%  Similarity=-0.017  Sum_probs=136.9

Q ss_pred             ceEEecCCCcEEE-EEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQ-TFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~-t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      .+|+++|+|+.++ +-.     .++.|.+||..++.. ..+....  ......+++++||+++++..++.|.+|+.....
T Consensus        27 ~~i~~~~~g~l~v~~~~-----~~~~i~~~~~~~~~~-~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~   98 (270)
T 1rwi_B           27 SGVAVDSAGNVYVTSEG-----MYGRVVKLATGSTGT-TVLPFNG--LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   98 (270)
T ss_dssp             EEEEECTTCCEEEEECS-----SSCEEEEECC------EECCCCS--CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             cceEECCCCCEEEEccC-----CCCcEEEecCCCccc-ceEeeCC--cCCcceeEECCCCCEEEEcCCCEEEEEeCCCce
Confidence            5789999999776 323     467899998765543 2222111  133447899999997776667799999976533


Q ss_pred             Cceeee-eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           82 KGILYR-LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        82 ~~~~~~-~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      . .... .....+..++++|++. .+   +.+  ...+.|.+|+...   ................+.++++|+ +.+. 
T Consensus        99 ~-~~~~~~~~~~p~~i~~~~~g~-l~---v~~--~~~~~i~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~-l~v~-  166 (270)
T 1rwi_B           99 Q-TVLPFDGLNYPEGLAVDTQGA-VY---VAD--RGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGN-VYVT-  166 (270)
T ss_dssp             C-EECCCCSCSSEEEEEECTTCC-EE---EEE--GGGTEEEEECTTC---CSCEECCCCSCCSCCCEEECTTCC-EEEE-
T ss_pred             E-eeeecCCcCCCcceEECCCCC-EE---EEE--CCCCEEEEEECCC---ceeEeeccccCCCceeEEEeCCCC-EEEE-
Confidence            2 1111 1234678899999743 22   211  1134667775432   221111111112345788899987 4332 


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---Cc
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG  237 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~  237 (434)
                      ..          +...|+.++..+.............+..++++++|..++  +...++.|.+||..+.......   ..
T Consensus       167 ~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v--~~~~~~~v~~~~~~~~~~~~~~~~~~~  234 (270)
T 1rwi_B          167 DT----------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV--TEHNTNQVVKLLAGSTTSTVLPFTGLN  234 (270)
T ss_dssp             EG----------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE--EETTTSCEEEECTTCSCCEECCCCSCS
T ss_pred             EC----------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEE--EECCCCcEEEEcCCCCcceeeccCCCC
Confidence            21          112356666555432222222235678999999995444  4555678999998765544332   24


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ....++++|+|+++++.. +  ++.|.+++....
T Consensus       235 ~p~~i~~~~~g~l~v~~~-~--~~~v~~~~~~~~  265 (270)
T 1rwi_B          235 TPLAVAVDSDRTVYVADR-G--NDRVVKLTSLEH  265 (270)
T ss_dssp             CEEEEEECTTCCEEEEEG-G--GTEEEEECCCGG
T ss_pred             CceeEEECCCCCEEEEEC-C--CCEEEEEcCCCc
Confidence            578899999998555544 2  369999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.27  E-value=4e-09  Score=97.92  Aligned_cols=236  Identities=6%  Similarity=-0.029  Sum_probs=140.8

Q ss_pred             cceEEecCCCc-EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCC
Q 013871            2 LLLLTCLRVGL-IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~-~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~   79 (434)
                      ..++.|+|+|+ .+++..     .++.|.+||..++  +..+....   .....+.|++||+++++.. ++.|.+|+..+
T Consensus        30 ~eg~~~d~~g~~l~~~~~-----~~~~i~~~~~~~~--~~~~~~~~---~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDV-----RQNRTWAWSDDGQ--LSPEMHPS---HHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEG-----GGTEEEEEETTSC--EEEEESSC---SSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             ccCCeEeCCCCEEEEEeC-----CCCEEEEEECCCC--eEEEECCC---CCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            35789999999 444433     4678999998877  55554432   3344789999999888775 47999999865


Q ss_pred             CCCceeeee----ecCCeeEEEEeCCCCCeEEEEec-CC---------CCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           80 FPKGILYRL----RVPGVAAFEVSKAPGSHVAVFVP-ES---------KGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        80 ~~~~~~~~~----~~~~v~~~~~sp~~~~~ia~~~~-~~---------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      .........    ....+.+++++|++ .+++.-.. ..         ......-.||.+..   ...+...........
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~g~~~~~~~~~~~~~  175 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP---DGTLSAPIRDRVKPN  175 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT---TSCEEEEECCCSSEE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC---CCCEEEeecCCCCCc
Confidence            432111111    12345678999985 33221000 00         00111225555543   222222222233446


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccc---eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      .+.|+|+|+.+ +.. . .+         ..++.++..  +..   ...+ ....+.+..++++++|+.++.  .  .+.
T Consensus       176 gi~~s~dg~~l-v~~-~-~~---------~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~--~--~~~  238 (296)
T 3e5z_A          176 GLAFLPSGNLL-VSD-T-GD---------NATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWAS--A--GDG  238 (296)
T ss_dssp             EEEECTTSCEE-EEE-T-TT---------TEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEE--E--TTE
T ss_pred             cEEECCCCCEE-EEe-C-CC---------CeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEE--c--CCe
Confidence            78999999987 432 1 11         124444443  221   1111 112445678999999985552  3  679


Q ss_pred             EEEEecccceeEEe--CCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          221 ATIFNKKCRPILEL--GSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       221 v~l~d~~~~~~~~~--~~~~~~~i~~-SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      |.+||.+++.+..+  +.. +++++| +|+|+.|.+++.+    .+.-++.++.++
T Consensus       239 v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~----~l~~~~~~~~~~  289 (296)
T 3e5z_A          239 VHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST----EFWSIETNVRGL  289 (296)
T ss_dssp             EEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT----EEEEEECSCCBC
T ss_pred             EEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC----eEEEEEcccccc
Confidence            99999987766555  445 888999 6999988888732    577777776543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.26  E-value=3e-09  Score=96.95  Aligned_cols=232  Identities=9%  Similarity=0.026  Sum_probs=137.6

Q ss_pred             eeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           54 SIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.+++||++++ .. .++.|.+|+................+..++++|++.-.++    +.   .+.|.+|+...   .
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~----~~---~~~i~~~d~~~---~   97 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVT----DF---NNRVVTLAAGS---N   97 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEE----ET---TTEEEEECTTC---S
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEE----cC---CCEEEEEeCCC---c
Confidence            788999999777 53 4579999987553221111112245778899987432222    11   35778887654   2


Q ss_pred             Cceeeeeec-ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEE
Q 013871          132 QPLARRSFF-RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF  210 (434)
Q Consensus       132 ~~i~~~~~~-~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~  210 (434)
                       .+...... ......+.++++|. +++ +..          +...|+.++................+..++++|+|+.+
T Consensus        98 -~~~~~~~~~~~~p~~i~~~~~g~-l~v-~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~  164 (270)
T 1rwi_B           98 -NQTVLPFDGLNYPEGLAVDTQGA-VYV-ADR----------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVY  164 (270)
T ss_dssp             -CCEECCCCSCSSEEEEEECTTCC-EEE-EEG----------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEE
T ss_pred             -eEeeeecCCcCCCcceEECCCCC-EEE-EEC----------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEE
Confidence             22212111 13456788899887 333 221          11134555332221111111122356889999999844


Q ss_pred             EEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee-C-CCceEE
Q 013871          211 AVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-A-ECSVTS  285 (434)
Q Consensus       211 av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~-~-~~~~~~  285 (434)
                      +  +....+.|.+||..+......   +......|+++|+|+++++.. +  ++.|.+||........... + ..+..+
T Consensus       165 v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i  239 (270)
T 1rwi_B          165 V--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH-N--TNQVVKLLAGSTTSTVLPFTGLNTPLAV  239 (270)
T ss_dssp             E--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET-T--TSCEEEECTTCSCCEECCCCSCSCEEEE
T ss_pred             E--EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC-C--CCcEEEEcCCCCcceeeccCCCCCceeE
Confidence            4  344467999999876554433   225578899999996555443 2  3689999987654333222 2 246679


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      +++|+|+.+++...      ++.|++++......
T Consensus       240 ~~~~~g~l~v~~~~------~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          240 AVDSDRTVYVADRG------NDRVVKLTSLEHHH  267 (270)
T ss_dssp             EECTTCCEEEEEGG------GTEEEEECCCGGGS
T ss_pred             EECCCCCEEEEECC------CCEEEEEcCCCccc
Confidence            99999997777666      89999999876543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.25  E-value=1.1e-07  Score=91.93  Aligned_cols=280  Identities=11%  Similarity=0.100  Sum_probs=166.1

Q ss_pred             cCCCcEEEEEecCC---CCCCCcEEEEEcCC-----CcEEEEEeecC----cCCCCC------Ceeeec--CCCcEEEEe
Q 013871            8 LRVGLIIQTFQKSS---TPQEKNVILWKTET-----GEAVYQLFQKN----MTKTTW------PSIRFS--SDEAVACRM   67 (434)
Q Consensus         8 SP~g~~L~t~~~~~---~~~d~~v~iWd~~~-----g~~~~~~~~~~----~~~~~~------~~~~~S--~d~~~la~~   67 (434)
                      .|..+++.+|.-+.   +..-..|.+-|+..     |+.++......    .|...|      .++.++  .++++|...
T Consensus        22 ~~~e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~  101 (462)
T 2ece_A           22 APPEDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVP  101 (462)
T ss_dssp             SCCCSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEE
T ss_pred             CCcceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEc
Confidence            46778888777553   22335688889987     78888766532    122334      234458  889888876


Q ss_pred             --cCCeEEEEeCCCC-CCcee-eeee---------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCce
Q 013871           68 --ATNEIQFFDTTDF-PKGIL-YRLR---------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPL  134 (434)
Q Consensus        68 --~~~~i~v~~~~~~-~~~~~-~~~~---------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i  134 (434)
                        .++.|.|+|+... ..... ..+.         ...-..+..+|++ -+|+..-...++.++.|.+++..+   .+.+
T Consensus       102 ~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T---~~v~  177 (462)
T 2ece_A          102 GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS---FEPL  177 (462)
T ss_dssp             BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT---CCEE
T ss_pred             cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC---CeEE
Confidence              4579999998532 22122 2221         0123345778885 333333222345678999999887   5666


Q ss_pred             eeeeecccc---eeEEEECCCCCeEEEEEEec-----------ccccCceeecceeEEEEeeCCc-ceeeeecCCC-CCe
Q 013871          135 ARRSFFRCS---TVQLNWNRGSTGLLAVAQSD-----------VDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKE-GPV  198 (434)
Q Consensus       135 ~~~~~~~~~---~~~~~ws~~G~~l~~~~~~~-----------~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~~~-~~i  198 (434)
                      .+...-...   -..+-|+|+++.++.. .-.           .|... . + ...|+.++.... ....+.+... ...
T Consensus       178 ~~~~~~~~~~~~~Yd~~~~p~~~~mvsS-~wg~p~~~~~g~~~~~~~~-~-~-~d~V~v~D~~~~k~~~tI~vg~~g~~P  253 (462)
T 2ece_A          178 GKWEIDRGDQYLAYDFWWNLPNEVLVSS-EWAVPNTIEDGLKLEHLKD-R-Y-GNRIHFWDLRKRKRIHSLTLGEENRMA  253 (462)
T ss_dssp             EECCSBCTTCCCCCCEEEETTTTEEEEC-BCCCHHHHTTCCCTTTHHH-H-S-CCEEEEEETTTTEEEEEEESCTTEEEE
T ss_pred             EEEccCCCCccccceEEECCCCCEEEEc-cCcCccccccccchhhhhh-c-c-CCEEEEEECCCCcEeeEEecCCCCCcc
Confidence            555432111   3458899999964331 100           00000 1 1 234666666543 2334444322 223


Q ss_pred             EEEEE--CcCCCEEEEEEcc-----CCCeEEEEecccc-----eeEEeC------------------CcCeeEEEECCCC
Q 013871          199 HDVQW--SYSGSEFAVVYGF-----MPASATIFNKKCR-----PILELG------------------SGPYNTVRWNPKG  248 (434)
Q Consensus       199 ~~v~w--spdg~~~av~~g~-----~~~~v~l~d~~~~-----~~~~~~------------------~~~~~~i~~SP~g  248 (434)
                      ..+.|  +|+|++..++ ..     ..++|.+|..+..     ++.++.                  ......|.+||||
T Consensus       254 ~~i~f~~~Pdg~~aYV~-~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          254 LELRPLHDPTKLMGFIN-MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEECSSTTCCEEEEE-EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             ceeEeeECCCCCEEEEE-EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            34545  9999988875 33     5567776543211     111111                  1335679999999


Q ss_pred             CeEEEEecCCCCCeEEEEEcc---CCEEEEEeeCC----------------CceEEEECCCCCEEEEEE
Q 013871          249 KFLCLAGFGNLPGDMAFWDYV---DGKQLGTTRAE----------------CSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~---~~~~i~~~~~~----------------~~~~~~wspdg~~l~tas  298 (434)
                      ++|.++..+.  +.|.+||+.   +.+++..+...                ....+++||||++|+++.
T Consensus       333 rfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          333 KFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEEEEETTT--TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999998765  799999986   34666665443                245699999999999998

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.25  E-value=7e-08  Score=88.89  Aligned_cols=267  Identities=7%  Similarity=-0.047  Sum_probs=156.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|+++|+|+.+++..     .++.|.+||.. ++. ..+.... .......+.++++|.+.+... ++.|..|+... 
T Consensus        17 ~~~i~~d~~g~l~v~~~-----~~~~v~~~d~~-~~~-~~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-   87 (299)
T 2z2n_A           17 PYGITVSDKGKVWITQH-----KANMISCINLD-GKI-TEYPLPT-PDAKVMCLTISSDGEVWFTENAANKIGRITKKG-   87 (299)
T ss_dssp             EEEEEECTTSCEEEEET-----TTTEEEEECTT-CCE-EEEECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred             ccceEECCCCCEEEEec-----CCCcEEEEcCC-CCe-EEecCCc-ccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-
Confidence            57899999999887644     46789999987 654 3333221 113445789999999887765 57899998752 


Q ss_pred             CCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecccceeEEEECCCCCeEE
Q 013871           81 PKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        81 ~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      . .....+  ....+..+.++|++...++    ..  ..+.|.+|+. +   +..... ..........+.+.++|.. .
T Consensus        88 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~d~-~---g~~~~~~~~~~~~~~~~i~~~~~g~l-~  155 (299)
T 2z2n_A           88 I-IKEYTLPNPDSAPYGITEGPNGDIWFT----EM--NGNRIGRITD-D---GKIREYELPNKGSYPSFITLGSDNAL-W  155 (299)
T ss_dssp             C-EEEEECSSTTCCEEEEEECTTSCEEEE----ET--TTTEEEEECT-T---CCEEEEECSSTTCCEEEEEECTTSCE-E
T ss_pred             c-EEEEeCCCcCCCceeeEECCCCCEEEE----ec--CCceEEEECC-C---CCEEEecCCCCCCCCceEEEcCCCCE-E
Confidence            1 111221  1235788888887422221    11  1346666665 3   221111 1111234567788888853 3


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--  234 (434)
                      +.. .          +...|+.++..+. ...+.+. ....+..++++++|+.++  +....+.+.+||..+. +..+  
T Consensus       156 v~~-~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~-~~~~~~  220 (299)
T 2z2n_A          156 FTE-N----------QNNAIGRITESGD-ITEFKIPTPASGPVGITKGNDDALWF--VEIIGNKIGRITTSGE-ITEFKI  220 (299)
T ss_dssp             EEE-T----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCC-EEEEEC
T ss_pred             EEe-C----------CCCEEEEEcCCCc-EEEeeCCCCCCcceeEEECCCCCEEE--EccCCceEEEECCCCc-EEEEEC
Confidence            221 1          1123566655332 2222222 234678999999988544  3445678999998433 3333  


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC--CCceEEEECCCCCEEEEEEcCCceeeCCcE
Q 013871          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGI  309 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i  309 (434)
                        +......++++|+|++++... +  ++.|.+||. +++.... ...  ..+..+.+ ++|+.+++. .      .+++
T Consensus       221 ~~~~~~~~~i~~~~~g~l~v~~~-~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~-~------~~~l  288 (299)
T 2z2n_A          221 PTPNARPHAITAGAGIDLWFTEW-G--ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAM-E------CDKI  288 (299)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEET-T--TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEE-T------TTEE
T ss_pred             CCCCCCceeEEECCCCCEEEecc-C--CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEe-c------CCcE
Confidence              235678899999999555432 2  368999998 4543322 222  25566888 888866654 3      5666


Q ss_pred             EEEeecC
Q 013871          310 KIFHHNG  316 (434)
Q Consensus       310 ~iw~~~g  316 (434)
                      ..++...
T Consensus       289 ~~~~~~~  295 (299)
T 2z2n_A          289 GKLTLIK  295 (299)
T ss_dssp             EEEEEC-
T ss_pred             EEEEcCc
Confidence            6666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.24  E-value=3.3e-09  Score=103.40  Aligned_cols=261  Identities=10%  Similarity=0.046  Sum_probs=149.7

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeec-Cc---CCCCCCeeeecCCCcEEEEec---CCe
Q 013871            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQK-NM---TKTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~-~~---~~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .|.|||||++|.......     +..++.|.++|..+++.+.++... ..   ....-..+.|||||+++....   ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            588999999998765210     113568999999999998887642 00   001122689999999888763   479


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-eecccc----eeE
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-SFFRCS----TVQ  146 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-~~~~~~----~~~  146 (434)
                      |.++|+....  ...++...+.  ..+.|++...+..+.+     ++.+.+.++..   ++..... ..+...    ...
T Consensus       202 VsVID~~t~k--vv~~I~v~g~--~~~~p~g~~~~v~~~~-----dG~~~~V~~~~---~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          202 VGVVDLEGKT--FDRMLDVPDC--YHIFPASPTVFYMNCR-----DGSLARVDFAD---GETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEEEETTTTE--EEEEEECCSE--EEEEEEETTEEEEEET-----TSSEEEEECCT---TCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEECCCCe--EEEEEEcCCc--eeeccCCCcEEEEEcC-----CCCEEEEECCC---CcEEEEeeeeeccCCCceeeE
Confidence            9999998754  3344555443  2233332222222221     12233333322   2221110 011100    123


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecC---------CCCCeEEEEECcCCCEEEEEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLR---------KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~---------~~~~i~~v~wspdg~~~av~~  214 (434)
                      +.+.++|..+++...     .+       .++.++..+.....   +.+.         .......++++||++++.+..
T Consensus       270 ~~~~~dg~~~~~~s~-----~g-------~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          270 PAFSLRSGRLVWPTY-----TG-------KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             CEECTTTCEEEEEBT-----TS-------EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeecCCCCEEEEEeC-----CC-------cEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence            456888888766421     11       35666554332111   1110         012233479999999888753


Q ss_pred             ccC--------CCeEEEEecccc-eeEEeCC-cCeeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEe-eCCCc
Q 013871          215 GFM--------PASATIFNKKCR-PILELGS-GPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECS  282 (434)
Q Consensus       215 g~~--------~~~v~l~d~~~~-~~~~~~~-~~~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~~~  282 (434)
                      ...        .+.|.++|++.. .+..+.. ..-..|.|+|||+ +++++..+  ++.|.++|+.+++.+.++ .-...
T Consensus       338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~  415 (426)
T 3c75_H          338 DQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRG  415 (426)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSS
T ss_pred             cccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCC
Confidence            321        247999999754 4445532 2367899999999 78777643  379999999999999886 32222


Q ss_pred             eEEEECCC
Q 013871          283 VTSEWSPD  290 (434)
Q Consensus       283 ~~~~wspd  290 (434)
                      -.+..+||
T Consensus       416 P~~i~~~~  423 (426)
T 3c75_H          416 PQIITTHD  423 (426)
T ss_dssp             CCEEECCC
T ss_pred             CcEEEcCC
Confidence            23555555

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.23  E-value=2.5e-09  Score=101.17  Aligned_cols=240  Identities=10%  Similarity=0.030  Sum_probs=144.0

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecC-------CeeE
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVP-------GVAA   95 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~-------~v~~   95 (434)
                      .++.|.+||..+++.+.++...    .....+++++|+++.++. .++.|.+||..+...  ...+...       ....
T Consensus        62 ~~~~v~viD~~t~~~~~~i~~~----~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~--~~~i~~g~~~~~~~~p~~  135 (328)
T 3dsm_A           62 NSHVIFAIDINTFKEVGRITGF----TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI--TGYIECPDMDMESGSTEQ  135 (328)
T ss_dssp             GGTEEEEEETTTCCEEEEEECC----SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE--EEEEECTTCCTTTCBCCC
T ss_pred             CCCEEEEEECcccEEEEEcCCC----CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE--EEEEEcCCccccCCCcce
Confidence            3578999999999998888533    233378999999766665 578999999877432  2223221       3445


Q ss_pred             EEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeec-c
Q 013871           96 FEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYG-E  174 (434)
Q Consensus        96 ~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g-~  174 (434)
                      +++ .+ + .+-+  .. .+..+.|.++++.+   .+.+...... .....+.++++|+ +++.+..+.+.  ..|.+ .
T Consensus       136 i~~-~~-~-~lyv--~~-~~~~~~v~viD~~t---~~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~~~~~~--~~~~~~~  202 (328)
T 3dsm_A          136 MVQ-YG-K-YVYV--NC-WSYQNRILKIDTET---DKVVDELTIG-IQPTSLVMDKYNK-MWTITDGGYEG--SPYGYEA  202 (328)
T ss_dssp             EEE-ET-T-EEEE--EE-CTTCCEEEEEETTT---TEEEEEEECS-SCBCCCEECTTSE-EEEEBCCBCTT--CSSCBCC
T ss_pred             EEE-EC-C-EEEE--Ec-CCCCCEEEEEECCC---CeEEEEEEcC-CCccceEEcCCCC-EEEEECCCccC--CccccCC
Confidence            556 22 2 2211  11 12356899999877   5555544432 2345678899987 33332211110  00100 1


Q ss_pred             eeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE--e-C--CcCeeEEEECCCC
Q 013871          175 SKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--L-G--SGPYNTVRWNPKG  248 (434)
Q Consensus       175 ~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~--~-~--~~~~~~i~~SP~g  248 (434)
                      ..|+.++...... ..+.+......+.++|+|+++.+.++ ..   .+.+||.....+..  + .  ......++++|++
T Consensus       203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~  278 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-NN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN  278 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-SS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT
T ss_pred             ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-cc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC
Confidence            3577777654322 23444323467899999999988864 22   89999987544321  1 1  2456789999966


Q ss_pred             CeEEEEecC--CCCCeEEEEEccCCEEEEEeeCC-CceEEEE
Q 013871          249 KFLCLAGFG--NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW  287 (434)
Q Consensus       249 ~~l~~~~~~--~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~w  287 (434)
                      ..|.++...  ..++.|.+||.+ ++.+..+... .+..++|
T Consensus       279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~  319 (328)
T 3dsm_A          279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW  319 (328)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred             CeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence            655555511  024799999998 8777766532 3333443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.15  E-value=7.5e-08  Score=89.48  Aligned_cols=225  Identities=12%  Similarity=0.083  Sum_probs=136.1

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|++++..|...  .++.|+.|+......   .... ...+..+.++|++. +++. .      ...|.+|+..+   
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~i~~~~dG~-l~v~-~------~~~l~~~d~~~---   82 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV---QRVTMDAPVSSVALRQSGG-YVAT-I------GTKFCALNWKE---   82 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCE---EEEECSSCEEEEEEBTTSS-EEEE-E------TTEEEEEETTT---
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcE---EEEeCCCceEEEEECCCCC-EEEE-E------CCeEEEEECCC---
Confidence            68999976655444  457999999876332   2222 34688899999854 3332 1      23677777654   


Q ss_pred             CCceeeeeec----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          131 SQPLARRSFF----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       131 ~~~i~~~~~~----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      ++........    ......+.++++|. +.+..................||.++..+.... + .......+.++|+||
T Consensus        83 g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~-~~~~~~pngi~~spd  159 (297)
T 3g4e_A           83 QSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y-FDQVDISNGLDWSLD  159 (297)
T ss_dssp             TEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E-EEEESBEEEEEECTT
T ss_pred             CcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEE-E-eeccccccceEEcCC
Confidence            2211111110    12245688999998 333322111000000012235777765543211 1 111234578999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc--cc------eeEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE
Q 013871          207 GSEFAVVYGFMPASATIFNKK--CR------PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT  276 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~--~~------~~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~  276 (434)
                      ++.++++ ....+.|.+||+.  ..      .+..+.  .+....+++.++|++.+....   .+.|..||.++++.+..
T Consensus       160 g~~lyv~-~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~  235 (297)
T 3g4e_A          160 HKIFYYI-DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT  235 (297)
T ss_dssp             SCEEEEE-EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred             CCEEEEe-cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence            9988764 5556799999863  21      122332  245578999999986665542   25899999998988887


Q ss_pred             eeCC--CceEEEEC-CCCCEEEEEEc
Q 013871          277 TRAE--CSVTSEWS-PDGRYFMTATT  299 (434)
Q Consensus       277 ~~~~--~~~~~~ws-pdg~~l~tas~  299 (434)
                      +..+  .++.|+|+ ||++.|..++.
T Consensus       236 i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          236 VKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EECCCCCceEEEEeCCCCCEEEEEcC
Confidence            7665  67779998 99998887776

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.14  E-value=5.6e-08  Score=89.43  Aligned_cols=219  Identities=11%  Similarity=0.103  Sum_probs=135.5

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee------cccceeEEEE-CCCCCeEEEEEEe
Q 013871           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF------FRCSTVQLNW-NRGSTGLLAVAQS  162 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~------~~~~~~~~~w-s~~G~~l~~~~~~  162 (434)
                      +.....++++|++ ..+..   +  ...+.|.+|+...    ..+.....      +......+.+ .++|. |++.. .
T Consensus        29 ~~~p~~v~~~~~g-~l~v~---~--~~~~~i~~~d~~g----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~-l~v~~-~   96 (286)
T 1q7f_A           29 FTEPSGVAVNAQN-DIIVA---D--TNNHRIQIFDKEG----RFKFQFGECGKRDSQLLYPNRVAVVRNSGD-IIVTE-R   96 (286)
T ss_dssp             BSCEEEEEECTTC-CEEEE---E--GGGTEEEEECTTS----CEEEEECCBSSSTTCBSSEEEEEEETTTTE-EEEEE-C
T ss_pred             cCCCceEEECCCC-CEEEE---E--CCCCEEEEECCCC----cEEEEecccCCCcccccCceEEEEEcCCCe-EEEEc-C
Confidence            4457788888874 32221   1  1235678887542    22222211      1124557777 45554 43321 1


Q ss_pred             cccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC----CcC
Q 013871          163 DVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGP  238 (434)
Q Consensus       163 ~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~----~~~  238 (434)
                      .         +...++.++..+.....+.......+++++++|+|+.++  +...++.|.+||..+..+..+.    ...
T Consensus        97 ~---------~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           97 S---------PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIV--VECKVMRVIIFDQNGNVLHKFGCSKHLEF  165 (286)
T ss_dssp             G---------GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEE--EETTTTEEEEECTTSCEEEEEECTTTCSS
T ss_pred             C---------CCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEE--EECCCCEEEEEcCCCCEEEEeCCCCccCC
Confidence            0         112355555444322223223345689999999997554  4555679999998877666652    245


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCC-cEEEEe
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDN-GIKIFH  313 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~-~i~iw~  313 (434)
                      .+.|+++|+|+++++..   .++.|.+||.. ++.+..+...    .+..++++|+|+.+++...      ++ .|.+|+
T Consensus       166 p~~i~~~~~g~l~v~~~---~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~------~~~~i~~~~  235 (286)
T 1q7f_A          166 PNGVVVNDKQEIFISDN---RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH------NNFNLTIFT  235 (286)
T ss_dssp             EEEEEECSSSEEEEEEG---GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS------SSCEEEEEC
T ss_pred             cEEEEECCCCCEEEEEC---CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC------CCEEEEEEC
Confidence            78999999999666554   23699999974 4555555432    4566999999988877766      66 999999


Q ss_pred             ecCceeeeeec----ccceeeEEEcCCCCCCC
Q 013871          314 HNGSLFFKKMF----DKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       314 ~~g~~~~~~~~----~~~~~~~w~p~~~~~~~  341 (434)
                      .+|+.+.....    .....+++.|++..++.
T Consensus       236 ~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs  267 (286)
T 1q7f_A          236 QDGQLISALESKVKHAQCFDVALMDDGSVVLA  267 (286)
T ss_dssp             TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEcccCCCCcceeEEECCCCcEEEE
Confidence            99987655432    23568899998753333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.14  E-value=5e-08  Score=90.85  Aligned_cols=244  Identities=9%  Similarity=0.029  Sum_probs=138.3

Q ss_pred             cceEEecCCCcEEEE-------EecCCCCCCCcEEEEEcCCCcEEEEEeec--CcCCCCCCeeeecCC-CcEEEEecCCe
Q 013871            2 LLLLTCLRVGLIIQT-------FQKSSTPQEKNVILWKTETGEAVYQLFQK--NMTKTTWPSIRFSSD-EAVACRMATNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t-------~~~~~~~~d~~v~iWd~~~g~~~~~~~~~--~~~~~~~~~~~~S~d-~~~la~~~~~~   71 (434)
                      ..+++|+|+|+.+++       ..     .++.|.+||..+++.. .+...  ..+......+.+++| +++++....+.
T Consensus        20 ~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~   93 (314)
T 1pjx_A           20 AEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEE-EEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEEEecCCCcEEEEECCCC
Confidence            357899999988877       23     4678999998888753 33220  001123447899999 88777666668


Q ss_pred             EEEEeCCCCCCcee-ee----eecCCeeEEEEeCCCCCeEEEEecCC-------CCCCceEEEEEcCCCCCCCceeeeee
Q 013871           72 IQFFDTTDFPKGIL-YR----LRVPGVAAFEVSKAPGSHVAVFVPES-------KGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        72 i~v~~~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~~ia~~~~~~-------~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      |.+|+.. ...... ..    .....+..+.++|++...++......       ........||.+...  ++ +.....
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~-~~~~~~  169 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDT  169 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEE
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CC-EEEecc
Confidence            9999986 322111 11    11224778999998532222111000       000112344544321  22 211111


Q ss_pred             cccceeEEEEC----CCCCeEEEEEEecccccCceeecceeEEEEeeC--Ccc---eeeeecCCC--CCeEEEEECcCCC
Q 013871          140 FRCSTVQLNWN----RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD--GTH---EGLVPLRKE--GPVHDVQWSYSGS  208 (434)
Q Consensus       140 ~~~~~~~~~ws----~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~--~~~---~~~v~l~~~--~~i~~v~wspdg~  208 (434)
                      .......+.|+    ++|+.|++....  +         ..|+.++..  +..   .....+...  +....++++++|+
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~--~---------~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~  238 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETP--T---------KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETT--T---------TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECC--C---------CeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence            12234578899    998876553211  1         123333322  110   011122211  4578899999997


Q ss_pred             EEEEEEccCCCeEEEEecc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          209 EFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .++  +...++.|.+||.+ +..+..+  +...+.+++|+|+|+.|.+++.+  ++.|..|++..
T Consensus       239 l~v--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~  299 (314)
T 1pjx_A          239 LLV--ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR  299 (314)
T ss_dssp             EEE--EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred             EEE--EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence            666  34446799999987 5444333  45678899999999977776643  36899999764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.12  E-value=1e-07  Score=93.04  Aligned_cols=228  Identities=10%  Similarity=0.077  Sum_probs=130.7

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-C--eEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-N--EIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~--~i~v~~~~   78 (434)
                      ...|+|+|+|+.+++-.     .++.|++||..++.... +....   ... +++|++++++|+.... +  .|.+|+..
T Consensus       133 P~~la~d~~g~lyv~d~-----~~~~I~~id~~~g~~~~-~~~~~---~~~-~ia~~~~g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQR-----DDPRVRLISVDDNKVTT-VHPGF---KGG-KPAVTKDKQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             EEEEEECSTTEEEEEET-----TTTEEEEEETTTTEEEE-EEETC---CBC-BCEECTTSSEEEEEBSSTTCEEEEEEGG
T ss_pred             ceEEEEeCCCCEEEEec-----CCCcEEEEECCCCEEEE-eeccC---CCC-ceeEecCCCcEEEEecCCCceEEEEEcC
Confidence            35799999999666544     46789999998776543 33321   222 4899999998776643 2  78888865


Q ss_pred             CCCCceeeee------ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCC
Q 013871           79 DFPKGILYRL------RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG  152 (434)
Q Consensus        79 ~~~~~~~~~~------~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~  152 (434)
                      .....  ..+      ....+.+++++|                                                   +
T Consensus       203 ~~~~~--~~~g~~~~~~~~~p~~iav~p---------------------------------------------------~  229 (409)
T 3hrp_A          203 SGWAP--TRIGQLGSTFSGKIGAVALDE---------------------------------------------------T  229 (409)
T ss_dssp             GTTCE--EEEEECCTTSCSCCCBCEECT---------------------------------------------------T
T ss_pred             CCcee--EEeeeccchhcCCcEEEEEeC---------------------------------------------------C
Confidence            42211  111      112233334443                                                   2


Q ss_pred             CCeEEEEEEecccccCceeecceeEEEEeeCCcceeee----ecCCCC--CeEEEEECcCCCEEEEEEccCCCeEEEEec
Q 013871          153 STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV----PLRKEG--PVHDVQWSYSGSEFAVVYGFMPASATIFNK  226 (434)
Q Consensus       153 G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v----~l~~~~--~i~~v~wspdg~~~av~~g~~~~~v~l~d~  226 (434)
                      +..|++ +  +.  .+       .++.++..+.....+    .....+  |.+.++|+|++..+.+ +....+.|..||.
T Consensus       230 ~g~lyv-~--d~--~~-------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv-~d~~~~~I~~~~~  296 (409)
T 3hrp_A          230 EEWLYF-V--DS--NK-------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM-SDQNLSSVYKITP  296 (409)
T ss_dssp             SSEEEE-E--CT--TC-------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE-EETTTTEEEEECT
T ss_pred             CCeEEE-E--EC--CC-------cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE-EeCCCCEEEEEec
Confidence            222222 1  00  00       122222221111111    000111  2239999997666665 4556779999998


Q ss_pred             ccceeEEeCC----------------cCeeEEEECCCCCeEEEEec-CCCCCeEEEEEccCCEEEEEeeC----------
Q 013871          227 KCRPILELGS----------------GPYNTVRWNPKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGTTRA----------  279 (434)
Q Consensus       227 ~~~~~~~~~~----------------~~~~~i~~SP~g~~l~~~~~-~~~~g~i~iwd~~~~~~i~~~~~----------  279 (434)
                      .+......+.                ..-+.++++|+|+ |.++.. ++  +.|+.||..+++.......          
T Consensus       297 ~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~--~~I~~~~~~~G~v~~~~g~~~~~g~~~g~  373 (409)
T 3hrp_A          297 DGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKG--YCLRKLDILDGYVSTVAGQVDVASQIDGT  373 (409)
T ss_dssp             TCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTT--CEEEEEETTTTEEEEEEECTTCBSCCCBS
T ss_pred             CCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCC--CEEEEEECCCCEEEEEeCCCCCCCcCCCC
Confidence            7653322221                2356899999999 445554 44  6999999888865433322          


Q ss_pred             ------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          280 ------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       280 ------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                            ..+..++++|+|..+++-..      ++.|+.+++
T Consensus       374 ~~~~~~~~P~giavd~~g~lyVad~~------n~~Ir~i~~  408 (409)
T 3hrp_A          374 PLEATFNYPYDICYDGEGGYWIAEAW------GKAIRKYAV  408 (409)
T ss_dssp             TTTCCBSSEEEEEECSSSEEEEEEST------TCEEEEEEE
T ss_pred             hhceEeCCceEEEEcCCCCEEEEECC------CCeEEEEEe
Confidence                  13556999999876666555      677777654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=9.2e-07  Score=81.31  Aligned_cols=255  Identities=8%  Similarity=0.019  Sum_probs=148.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      +.+|.++++|+..++..     .++.|.+||.. ++... +.... .......+.+.+++.+.+... ++.|.+|+.. .
T Consensus        22 p~~i~~d~~g~l~v~~~-----~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           22 PYGITSSEDGKVWFTQH-----KANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             EEEEEECTTSCEEEEET-----TTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cceeeECCCCCEEEEcC-----CCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            46789999999887654     46789999987 65433 33221 113344788999998777664 5789999876 2


Q ss_pred             CCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee--cccceeEEEECCCCCeE
Q 013871           81 PKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF--FRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l  156 (434)
                      .. ....+.  ...+..+++.+++...++    ..  ..+.|..++...    . +.....  .......+.+.++|+ |
T Consensus        93 ~~-~~~~~~~~~~~~~~i~~~~~g~l~v~----~~--~~~~i~~~~~~g----~-~~~~~~~~~~~~~~~i~~d~~g~-l  159 (300)
T 2qc5_A           93 GF-TEYPLPQPDSGPYGITEGLNGDIWFT----QL--NGDRIGKLTADG----T-IYEYDLPNKGSYPAFITLGSDNA-L  159 (300)
T ss_dssp             CE-EEEECSSTTCCEEEEEECSTTCEEEE----ET--TTTEEEEECTTS----C-EEEEECSSTTCCEEEEEECTTSS-E
T ss_pred             Ce-EEecCCCCCCCCccceECCCCCEEEE----cc--CCCeEEEECCCC----C-EEEccCCCCCCCceeEEECCCCC-E
Confidence            21 212221  245778888887432222    11  123555555431    1 111111  123456778888887 3


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE-e
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~-~  234 (434)
                      .+. ..          +...|+.++..+.. ..+.+. ....+..+++.++|+.++  +....+.|.+||..+..... +
T Consensus       160 ~v~-~~----------~~~~i~~~~~~g~~-~~~~~~~~~~~~~~i~~d~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~  225 (300)
T 2qc5_A          160 WFT-EN----------QNNSIGRITNTGKL-EEYPLPTNAAAPVGITSGNDGALWF--VEIMGNKIGRITTTGEISEYDI  225 (300)
T ss_dssp             EEE-ET----------TTTEEEEECTTCCE-EEEECSSTTCCEEEEEECTTSSEEE--EETTTTEEEEECTTCCEEEEEC
T ss_pred             EEE-ec----------CCCeEEEECCCCcE-EEeeCCCCCCCcceEEECCCCCEEE--EccCCCEEEEEcCCCcEEEEEC
Confidence            332 11          11135555553332 223332 234678999999986555  34445689999985443322 2


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE-Eee--CCCceEEEECCCCCEEEE
Q 013871          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTR--AECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~-~~~--~~~~~~~~wspdg~~l~t  296 (434)
                        +......++++|+|++.++. .+  ++.|..||.. ++... ...  ...+..+..+++|+.+++
T Consensus       226 ~~~~~~~~~i~~d~~g~l~v~~-~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  288 (300)
T 2qc5_A          226 PTPNARPHAITAGKNSEIWFTE-WG--ANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFA  288 (300)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEE-TT--TTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEE
T ss_pred             CCCCCCceEEEECCCCCEEEec-cC--CCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEE
Confidence              23456789999999855544 32  3689999984 43322 122  124556899999985443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=1.5e-08  Score=97.09  Aligned_cols=256  Identities=8%  Similarity=-0.028  Sum_probs=139.8

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcC----CCCCCeeeecCCCcEEEEec---CCe
Q 013871            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMT----KTTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~----~~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .+.|||||++|.......     +..++.|.+||+.+++.+.++......    ...-..+++||||++++.+.   ++.
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            589999999999876311     123578999999999999998653100    01223789999999888763   357


Q ss_pred             EEE--EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC----CCCCCceeee-eecccce
Q 013871           72 IQF--FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK----DLQSQPLARR-SFFRCST  144 (434)
Q Consensus        72 i~v--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~----~~~~~~i~~~-~~~~~~~  144 (434)
                      |.+  +|...     ...+...+.  +.+.|++......     ...++.+.+.++..    .  ++.+... .+.....
T Consensus       149 v~V~~iD~~t-----v~~i~v~~~--~~~~p~g~~~~~~-----~~~dg~~~~vd~~~~~~~~--~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          149 AGLSVPGASD-----DQLTKSASC--FHIHPGAAATHYL-----GSCPASLAASDLAAAPAAA--GIVGAQCTGAQNCSS  214 (368)
T ss_dssp             EEEEETTTEE-----EEEEECSSC--CCCEEEETTEEEC-----CCCTTSCEEEECCSSCCCC--EECCCCSCTTSCBCS
T ss_pred             EEEEEEchhh-----ceEEECCCc--eEEccCCCeEEEE-----EcCCCCEEEEECccccccC--CeEEEEeeeeeeCCC
Confidence            888  88755     223333322  1223432222211     11223344444432    0  1111000 0011111


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee---eecCC---------CCCeEEEEECcCCCEEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL---VPLRK---------EGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~---v~l~~---------~~~i~~v~wspdg~~~av  212 (434)
                      .... .+++..+++...      +       .++.++..+.....   +.+..         ......++++||++++.+
T Consensus       215 ~P~~-~~~~~~~~~vs~------~-------~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV  280 (368)
T 1mda_H          215 QAAQ-ANYPGMLVWAVA------S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             CCEE-ETTTTEEEECBS------S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             Cccc-cccCCEEEEEcC------C-------EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence            1112 455555544311      1       24555553321111   11110         112223789999999887


Q ss_pred             EEc-c-C-----CCeEEEEecccce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc
Q 013871          213 VYG-F-M-----PASATIFNKKCRP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS  282 (434)
Q Consensus       213 ~~g-~-~-----~~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~  282 (434)
                      ... . .     ...+.++|+.... +..+. ......|+|+|||++++++... .+++|.++|+.+++.+..+... ..
T Consensus       281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~-~~~~VsVID~~t~kvv~~I~vg~~P  359 (368)
T 1mda_H          281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA-GTEVLDIYDAASDQDQSSVELDKGP  359 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET-TTTEEEEEESSSCEEEEECCCCSCC
T ss_pred             EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC-CCCeEEEEECCCCcEEEEEECCCCC
Confidence            433 1 1     2356699997544 44442 2246789999999865555431 1369999999999999888754 44


Q ss_pred             eEEEEC
Q 013871          283 VTSEWS  288 (434)
Q Consensus       283 ~~~~ws  288 (434)
                      ..+++.
T Consensus       360 ~~i~~~  365 (368)
T 1mda_H          360 ESLSVQ  365 (368)
T ss_dssp             CEEECC
T ss_pred             CEEEee
Confidence            445544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.07  E-value=1.6e-07  Score=87.35  Aligned_cols=239  Identities=10%  Similarity=-0.004  Sum_probs=140.4

Q ss_pred             CeeeecCCCcEEEE--------ecCCeEEEEeCCCCCCceeeee-----ecCCeeEEEEeCC-CCCeEEEEecCCCCCCc
Q 013871           53 PSIRFSSDEAVACR--------MATNEIQFFDTTDFPKGILYRL-----RVPGVAAFEVSKA-PGSHVAVFVPESKGSPA  118 (434)
Q Consensus        53 ~~~~~S~d~~~la~--------~~~~~i~v~~~~~~~~~~~~~~-----~~~~v~~~~~sp~-~~~~ia~~~~~~~~~~~  118 (434)
                      ..++|++++.+++.        ..++.|.+|+..+... .....     ....+..+.++++ +...++.    .   ..
T Consensus        21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~----~---~~   92 (314)
T 1pjx_A           21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVAD----M---RL   92 (314)
T ss_dssp             EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEE----T---TT
T ss_pred             cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEE----C---CC
Confidence            37899999998887        4567999999765432 11111     2356788999987 3222221    1   12


Q ss_pred             eEEEEEcCCCCCCCceee-ee----ecccceeEEEECCCCCeEEEEEEecc----cccCceeecceeEEEEeeCCcceee
Q 013871          119 SVQIYACGKDLQSQPLAR-RS----FFRCSTVQLNWNRGSTGLLAVAQSDV----DKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       119 ~v~i~~~~~~~~~~~i~~-~~----~~~~~~~~~~ws~~G~~l~~~~~~~~----d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                      .|.+|+.. .   +.... ..    ........+.+.++|+. .+....+.    +...........|+.++..+.....
T Consensus        93 ~l~~~d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  167 (314)
T 1pjx_A           93 GLLVVQTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV  167 (314)
T ss_dssp             EEEEEETT-S---CEEECCSBCTTSCBCBCCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE
T ss_pred             CEEEEeCC-C---CEEEEEeccCCCccccCCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEEECCCCCEEEe
Confidence            56777764 1   11110 00    01123568899999974 33221110    0000000011346777654322111


Q ss_pred             eecCCCCCeEEEEEC----cCCCEEEEEEccCCCeEEEEecc-cc------eeEEeCC---cCeeEEEECCCCCeEEEEe
Q 013871          190 VPLRKEGPVHDVQWS----YSGSEFAVVYGFMPASATIFNKK-CR------PILELGS---GPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       190 v~l~~~~~i~~v~ws----pdg~~~av~~g~~~~~v~l~d~~-~~------~~~~~~~---~~~~~i~~SP~g~~l~~~~  255 (434)
                        .......+.++|+    |+|+.+.+. ....+.|.+||.+ ..      ....+..   .....++++++|++++...
T Consensus       168 --~~~~~~~~~i~~~~~~d~dg~~l~v~-~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          168 --DTAFQFPNGIAVRHMNDGRPYQLIVA-ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             --EEEESSEEEEEEEECTTSCEEEEEEE-ETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             --ccCCCCcceEEEecccCCCCCEEEEE-ECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence              1112356889999    999777653 4456799999975 22      1222321   4467899999998777654


Q ss_pred             cCCCCCeEEEEEccCCEEEEEeeC--CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          256 FGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       256 ~~~~~g~i~iwd~~~~~~i~~~~~--~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                         .++.|.+||.++++.+..+..  ..+..++++|||++|..++..     ++.|..|+..
T Consensus       245 ---~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-----~~~l~~~~~~  298 (314)
T 1pjx_A          245 ---GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQ  298 (314)
T ss_dssp             ---TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEECS
T ss_pred             ---CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC-----CCeEEEEeCC
Confidence               235899999986655444443  356679999999977766653     6788888864

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.06  E-value=1.4e-08  Score=97.14  Aligned_cols=255  Identities=9%  Similarity=-0.029  Sum_probs=144.7

Q ss_pred             cEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEEEEeCCCCCCceeeeeec-----
Q 013871           27 NVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQFFDTTDFPKGILYRLRV-----   90 (434)
Q Consensus        27 ~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~v~~~~~~~~~~~~~~~~-----   90 (434)
                      +|.+.|..+++.+.++....   .  +.+.+|||++++..+.           ++.|.+||+.+....  .++..     
T Consensus        47 ~vsvID~~t~~v~~~i~vG~---~--P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--~~I~v~~~~~  119 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--ADIELPDAPR  119 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE--EEEEETTSCS
T ss_pred             eEEEEECCCCeEEEEEeCCC---C--CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE--EEEECCCccc
Confidence            88899999999999988753   2  3799999999888774           478999999886543  33333     


Q ss_pred             ----CCeeEEEEeCCCCCeEEEEecCCCCCCceEEE--EEcCCCCCCCceeeeeec-------ccceeEEEECCCCCeEE
Q 013871           91 ----PGVAAFEVSKAPGSHVAVFVPESKGSPASVQI--YACGKDLQSQPLARRSFF-------RCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        91 ----~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i--~~~~~~~~~~~i~~~~~~-------~~~~~~~~ws~~G~~l~  157 (434)
                          .....+.+||++...+ +...   +....+.+  +|+.+      +.....-       .....-+..+++|+.+.
T Consensus       120 ~~~g~~P~~ia~SpDGk~ly-Van~---~~~~~v~V~~iD~~t------v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~  189 (368)
T 1mda_H          120 FSVGPRVHIIGNCASSACLL-FFLF---GSSAAAGLSVPGASD------DQLTKSASCFHIHPGAAATHYLGSCPASLAA  189 (368)
T ss_dssp             CCBSCCTTSEEECTTSSCEE-EEEC---SSSCEEEEEETTTEE------EEEEECSSCCCCEEEETTEEECCCCTTSCEE
T ss_pred             cccCCCcceEEEcCCCCEEE-EEcc---CCCCeEEEEEEchhh------ceEEECCCceEEccCCCeEEEEEcCCCCEEE
Confidence                2356789999954433 3221   11234555  55432      1111110       01111123334444322


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce--e-EEe
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I-LEL  234 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~--~-~~~  234 (434)
                      +-    .+.... +.+    ..+....   ..+.+. ..|.   + ++++..++++  .. +.+.+.|.....  + ..+
T Consensus       190 vd----~~~~~~-~~~----~v~~~~t---~~i~vg-~~P~---~-~~~~~~~~~v--s~-~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          190 SD----LAAAPA-AAG----IVGAQCT---GAQNCS-SQAA---Q-ANYPGMLVWA--VA-SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             EE----CCSSCC-CCE----ECCCCSC---TTSCBC-SCCE---E-ETTTTEEEEC--BS-SCCEEEECCSSCCEEECCC
T ss_pred             EE----Cccccc-cCC----eEEEEee---eeeeCC-CCcc---c-cccCCEEEEE--cC-CEEEEEECCCCcceEEEEE
Confidence            11    000000 000    0000000   112222 3454   3 6677777753  33 789999986432  1 111


Q ss_pred             --C----------CcCeeEEEECCCCCeEEEEec---CC---CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEE
Q 013871          235 --G----------SGPYNTVRWNPKGKFLCLAGF---GN---LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFM  295 (434)
Q Consensus       235 --~----------~~~~~~i~~SP~g~~l~~~~~---~~---~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~  295 (434)
                        .          ......+.++|||+.+.++..   +.   ..+.+.++|+.+++.+..+... ....++|+|||++++
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~  329 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN  329 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEE
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEE
Confidence              1          011223789999998887642   10   0125669999999988877654 566799999998655


Q ss_pred             EEEc-CCceeeCCcEEEEeec-Cceeeeee
Q 013871          296 TATT-APRLQIDNGIKIFHHN-GSLFFKKM  323 (434)
Q Consensus       296 tas~-~prl~~D~~i~iw~~~-g~~~~~~~  323 (434)
                      .+.. .     ++.|.++|.. ++.+....
T Consensus       330 va~~~~-----~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          330 YANSAG-----TEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEETT-----TTEEEEEESSSCEEEEECC
T ss_pred             EEccCC-----CCeEEEEECCCCcEEEEEE
Confidence            5543 3     8999999994 55555443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.02  E-value=4.4e-07  Score=84.27  Aligned_cols=227  Identities=8%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCc
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKG   83 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~   83 (434)
                      +..|+|++..|.....    .++.|..||..+++. ..+...    ..+.++.|++||++++.. ++.|.+|+..+....
T Consensus        17 gp~w~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDI----PAKKVCRWDSFTKQV-QRVTMD----APVSSVALRQSGGYVATI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             EEEEETTTTEEEEEET----TTTEEEEEETTTCCE-EEEECS----SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred             CCeEECCCCEEEEEEC----CCCEEEEEECCCCcE-EEEeCC----CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence            5789997776665442    457899999988765 333322    344588999999966654 679999998653221


Q ss_pred             eeeeee----cCCeeEEEEeCCCCCeEEEEecCCC---CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           84 ILYRLR----VPGVAAFEVSKAPGSHVAVFVPESK---GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        84 ~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~---~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      ......    ...+.++.++|++.-.++.......   .......||.+...  +. +............+.|+|+|+.|
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--g~-~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD--HH-VKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT--SC-EEEEEEEESBEEEEEECTTSCEE
T ss_pred             EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC--CC-EEEEeeccccccceEEcCCCCEE
Confidence            111111    1236788999985433332211100   11234567776542  22 22221122234578999999987


Q ss_pred             EEEEEecccccCceeecceeEEEEeeC---Ccc---eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-c
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTD---GTH---EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-C  228 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~---~~~---~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~  228 (434)
                      ++..+.    .+       .|+.++..   +..   .....+. ..+....+++.++|+..+  +....+.|.+||.+ +
T Consensus       164 yv~~~~----~~-------~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv--a~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          164 YYIDSL----SY-------SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV--ACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             EEEEGG----GT-------EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE--EEETTTEEEEECTTTC
T ss_pred             EEecCC----CC-------cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE--EEcCCCEEEEEcCCCc
Confidence            654211    11       23444331   110   1111222 134567899999997555  34446789999997 5


Q ss_pred             ceeEEe--CCcCeeEEEEC-CCCCeEEEEec
Q 013871          229 RPILEL--GSGPYNTVRWN-PKGKFLCLAGF  256 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~S-P~g~~l~~~~~  256 (434)
                      +.+..+  +...+++++|+ |+++.|.+++.
T Consensus       231 ~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          231 KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence            655554  44678899998 89987766553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.00  E-value=3.8e-06  Score=77.04  Aligned_cols=248  Identities=8%  Similarity=-0.064  Sum_probs=145.0

Q ss_pred             CCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCC
Q 013871           51 TWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGK  127 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~  127 (434)
                      .+.++.+++||++.+... ++.|.+|+.. .. .....+  ....+..+.+++++...++    .  ...+.|..|+...
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~i~~~~~~g   87 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYPLPTPDAKVMCLTISSDGEVWFT----E--NAANKIGRITKKG   87 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEecCCcccCceeeEEECCCCCEEEe----C--CCCCeEEEECCCC
Confidence            344889999999887765 5799999977 22 122221  1346788888887432222    1  1124566665431


Q ss_pred             CCCCCceeeeee--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEEC
Q 013871          128 DLQSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWS  204 (434)
Q Consensus       128 ~~~~~~i~~~~~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~ws  204 (434)
                           .+.....  .......+.+.++|.. .+. ..          +...++.++..+. ...+.+. ....++.+++.
T Consensus        88 -----~~~~~~~~~~~~~~~~i~~~~~g~l-~v~-~~----------~~~~i~~~d~~g~-~~~~~~~~~~~~~~~i~~~  149 (299)
T 2z2n_A           88 -----IIKEYTLPNPDSAPYGITEGPNGDI-WFT-EM----------NGNRIGRITDDGK-IREYELPNKGSYPSFITLG  149 (299)
T ss_dssp             -----CEEEEECSSTTCCEEEEEECTTSCE-EEE-ET----------TTTEEEEECTTCC-EEEEECSSTTCCEEEEEEC
T ss_pred             -----cEEEEeCCCcCCCceeeEECCCCCE-EEE-ec----------CCceEEEECCCCC-EEEecCCCCCCCCceEEEc
Confidence                 1211111  2234567788888763 222 11          1123555555332 2222222 24568999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccceeEE-e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeC-
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKCRPILE-L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRA-  279 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~~~~~~-~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~-  279 (434)
                      ++|+.++  +....+.+..||..+..... +  .......++++|+|++++...   ..+.|.+||. +++.... ... 
T Consensus       150 ~~g~l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~  223 (299)
T 2z2n_A          150 SDNALWF--TENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEI---IGNKIGRITT-SGEITEFKIPTP  223 (299)
T ss_dssp             TTSCEEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSST
T ss_pred             CCCCEEE--EeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEcc---CCceEEEECC-CCcEEEEECCCC
Confidence            9997655  34556789999984333221 2  234567899999999665543   2368999999 6653332 221 


Q ss_pred             -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeee-e--cccceeeEEEcCCC
Q 013871          280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-M--FDKLFQAEWKPVSP  337 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~-~--~~~~~~~~w~p~~~  337 (434)
                       ..+..++++++|+.+++...      ++.|.+|+.+|...... .  ......+.+ +.+.
T Consensus       224 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~-~~g~  278 (299)
T 2z2n_A          224 NARPHAITAGAGIDLWFTEWG------ANKIGRLTSNNIIEEYPIQIKSAEPHGICF-DGET  278 (299)
T ss_dssp             TCCEEEEEECSTTCEEEEETT------TTEEEEEETTTEEEEEECSSSSCCEEEEEE-CSSC
T ss_pred             CCCceeEEECCCCCEEEeccC------CceEEEECCCCceEEEeCCCCCCccceEEe-cCCC
Confidence             25566999999996655545      78999999877543221 1  134566666 5543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.00  E-value=1.2e-07  Score=89.56  Aligned_cols=204  Identities=12%  Similarity=0.096  Sum_probs=121.8

Q ss_pred             ceEEEEEcCCCCCCCceeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC---
Q 013871          118 ASVQIYACGKDLQSQPLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---  193 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~---  193 (434)
                      +.|.+|+..+   ++.+.... ..-.....+.++++|+ |++ +.. .         ...++.++..+.......+.   
T Consensus        69 ~~i~~~d~~~---g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~-~---------~~~v~~~~~~g~~~~~~~~~~~~  133 (329)
T 3fvz_A           69 DTILVIDPNN---AEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV-A---------LHQVFKLDPHSKEGPLLILGRSM  133 (329)
T ss_dssp             CCEEEECTTT---CCEEEEECTTTCSSEEEEEECTTSC-EEE-EET-T---------TTEEEEECTTCSSCCSEEESBTT
T ss_pred             CcEEEEECCC---CeEEeccCCCccCCceEEEECCCCC-EEE-EEC-C---------CCEEEEEeCCCCeEEEEEecccC
Confidence            4677777655   33332221 1112456788999998 333 222 1         11345555444311222221   


Q ss_pred             -------CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccceeEEeCC------------cCeeEEEECCCCCeEEE
Q 013871          194 -------KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRPILELGS------------GPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       194 -------~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~~~~~~~------------~~~~~i~~SP~g~~l~~  253 (434)
                             .-.....++++| +|..++ +.+..++.|.+||..+..+..+..            ...+.|+++|++..|++
T Consensus       134 ~~g~~~~~~~~P~~ia~~~~~g~lyv-~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v  212 (329)
T 3fvz_A          134 QPGSDQNHFCQPTDVAVEPSTGAVFV-SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCV  212 (329)
T ss_dssp             BCCCSTTCCSSEEEEEECTTTCCEEE-EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEE
T ss_pred             CCCCCccccCCCcEEEEeCCCCeEEE-EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEE
Confidence                   123578999999 565554 222357899999988777776631            12578999999555555


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCc-eeeCCcEEEEee-cCceeeee-----
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPR-LQIDNGIKIFHH-NGSLFFKK-----  322 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~pr-l~~D~~i~iw~~-~g~~~~~~-----  322 (434)
                      +..++  +.|.+||.++++.+..+...    .+..++|+| |..+.+.+...- -..++.|++|++ +|+++...     
T Consensus       213 ~d~~~--~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~  289 (329)
T 3fvz_A          213 ADREN--GRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK  289 (329)
T ss_dssp             EETTT--TEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS
T ss_pred             EECCC--CEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC
Confidence            65443  79999999988888877432    456689999 444443332000 001568999996 67666553     


Q ss_pred             ecccceeeEEEcCCCCCCC
Q 013871          323 MFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       323 ~~~~~~~~~w~p~~~~~~~  341 (434)
                      .......+++.|++ .+|-
T Consensus       290 ~~~~p~~ia~~~dG-~lyv  307 (329)
T 3fvz_A          290 HFDMPHDIVASEDG-TVYI  307 (329)
T ss_dssp             CCSSEEEEEECTTS-EEEE
T ss_pred             ccCCeeEEEECCCC-CEEE
Confidence            33457788898887 4443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.97  E-value=8.1e-08  Score=96.07  Aligned_cols=261  Identities=10%  Similarity=0.091  Sum_probs=155.3

Q ss_pred             CCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeee-c-CCCcEEEEec------------------
Q 013871            9 RVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRF-S-SDEAVACRMA------------------   68 (434)
Q Consensus         9 P~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~-S-~d~~~la~~~------------------   68 (434)
                      |||+||.....    .+..|.+.|+.+.++...+.....  .....+.+ + ||++++....                  
T Consensus        99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A           99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNA--KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSC--CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCC--CCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence            49999988662    356799999999998775433221  23336676 5 8999887763                  


Q ss_pred             -CCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEecCC-C---------CCCceEEEEEcCCCCCCCceee
Q 013871           69 -TNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPES-K---------GSPASVQIYACGKDLQSQPLAR  136 (434)
Q Consensus        69 -~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~~-~---------~~~~~v~i~~~~~~~~~~~i~~  136 (434)
                       ++.+.+.|.....  ...++.. .....+.++|++...+.. ...+ .         .....|.+.+.+..   ..   
T Consensus       173 ~~~~vtvID~~t~~--v~~qI~Vgg~pd~~~~spdGk~~~vt-~~~se~~~~i~~~~~~~~d~v~V~~~~~~---~~---  243 (595)
T 1fwx_A          173 YVNVFTAVDADKWE--VAWQVLVSGNLDNCDADYEGKWAFST-SYNSEKGMTLPEMTAAEMDHIVVFNIAEI---EK---  243 (595)
T ss_dssp             EEEEEEEEETTTTE--EEEEEEESSCCCCEEECSSSSEEEEE-ESCTTCCSSHHHHTCCSEEEEEEEEHHHH---HH---
T ss_pred             cCceEEEEECCCCe--EEEEEEeCCCccceEECCCCCEEEEE-ecCcccCcchhhccccccceEEEeeccce---eE---
Confidence             2478888887643  3445544 244567789984332222 2111 1         11134555554431   00   


Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCC--c-c-eeeeecCCCCCeEEEEECcCCCEEEE
Q 013871          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG--T-H-EGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~--~-~-~~~v~l~~~~~i~~v~wspdg~~~av  212 (434)
                                  ..++|+.+.+              +  .+-.++...  . . ...++..  ...+.+.++|||+++++
T Consensus       244 ------------~v~~Gk~~~i--------------~--~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          244 ------------AIAAGDYQEL--------------N--GVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             ------------HHHHTCSEEE--------------T--TEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSSEEEE
T ss_pred             ------------eccCCCeeEE--------------C--cEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCCEEEE
Confidence                        1223443221              1  123333332  1 1 1233332  35688999999999887


Q ss_pred             EEccCCCeEEEEecccc-------------eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------
Q 013871          213 VYGFMPASATIFNKKCR-------------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------  270 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~~~-------------~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-------  270 (434)
                       ++....++.+||....             .+.+.  +.+ -..++|+|+| ++.+..+  ++++|.+||+++       
T Consensus       294 -~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~--ldsqV~kwdi~~a~~~~~g  368 (595)
T 1fwx_A          294 -AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLF--LDSQVVKWNIEDAIRAYAG  368 (595)
T ss_dssp             -ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEET--TTTEEEEEEHHHHHHHHHT
T ss_pred             -eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEe--cCCcEEEEEhhHhhhhhcc
Confidence             5777779999999743             22233  233 3568999999 6655554  567999999987       


Q ss_pred             ---CEEEEEeeCCCc-eE------EEECCCCCEEEEEEcCCceee-------CCcEEEEeecCcee
Q 013871          271 ---GKQLGTTRAECS-VT------SEWSPDGRYFMTATTAPRLQI-------DNGIKIFHHNGSLF  319 (434)
Q Consensus       271 ---~~~i~~~~~~~~-~~------~~wspdg~~l~tas~~prl~~-------D~~i~iw~~~g~~~  319 (434)
                         .+.+.++..+.. -+      ...+|||++|+++.....=|.       -..-.|+|++|..+
T Consensus       369 ~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          369 EKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred             cccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence               567777766522 22      345899999999876422110       01128899987643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.91  E-value=2.9e-06  Score=79.84  Aligned_cols=218  Identities=9%  Similarity=0.053  Sum_probs=130.6

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC
Q 013871           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~  130 (434)
                      .+.|++++..++..  .++.|.+|+.....   ...+. ...+..+.++|++ .+++. . .     ..|.+|+..+   
T Consensus        53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~---~~~~~~~~~v~~i~~~~dg-~l~v~-~-~-----~gl~~~d~~~---  118 (326)
T 2ghs_A           53 GPTFDPASGTAWWFNILERELHELHLASGR---KTVHALPFMGSALAKISDS-KQLIA-S-D-----DGLFLRDTAT---  118 (326)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTE---EEEEECSSCEEEEEEEETT-EEEEE-E-T-----TEEEEEETTT---
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEECCCcceEEEEeCCC-eEEEE-E-C-----CCEEEEECCC---
Confidence            68999986544443  45799999987632   12222 2468889999984 33322 1 1     2377777655   


Q ss_pred             CCceeeeeec----ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcC
Q 013871          131 SQPLARRSFF----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS  206 (434)
Q Consensus       131 ~~~i~~~~~~----~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspd  206 (434)
                      ++........    ......+.++++|+. ++.... .+.    ......||.++ .+.. ..+ .......+.++|+||
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l-~v~~~~-~~~----~~~~~~l~~~~-~g~~-~~~-~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGAL-WIGTMG-RKA----ETGAGSIYHVA-KGKV-TKL-FADISIPNSICFSPD  189 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCE-EEEEEE-TTC----CTTCEEEEEEE-TTEE-EEE-EEEESSEEEEEECTT
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCE-EEEeCC-CcC----CCCceEEEEEe-CCcE-EEe-eCCCcccCCeEEcCC
Confidence            3221111110    123567899999984 332211 110    01223577777 4321 111 111235678999999


Q ss_pred             CCEEEEEEccCCCeEEEEecc--cc-e------eEEeC--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          207 GSEFAVVYGFMPASATIFNKK--CR-P------ILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       207 g~~~av~~g~~~~~v~l~d~~--~~-~------~~~~~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      |+.++++ ....+.|.+||..  .. .      +..+.  ......+++.++|++.+... +  .+.|.+||. +++.+.
T Consensus       190 g~~lyv~-~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~-~--~~~v~~~d~-~g~~~~  264 (326)
T 2ghs_A          190 GTTGYFV-DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-G--EGAVDRYDT-DGNHIA  264 (326)
T ss_dssp             SCEEEEE-ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-T--TTEEEEECT-TCCEEE
T ss_pred             CCEEEEE-ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe-C--CCEEEEECC-CCCEEE
Confidence            9988774 4456799999974  22 1      22332  34457899999998666543 2  258999998 566666


Q ss_pred             EeeCC--CceEEEEC-CCCCEEEEEEc
Q 013871          276 TTRAE--CSVTSEWS-PDGRYFMTATT  299 (434)
Q Consensus       276 ~~~~~--~~~~~~ws-pdg~~l~tas~  299 (434)
                      .+..+  .+..++|+ ||++.|++++.
T Consensus       265 ~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          265 RYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEECCCCCcEEEEEecCCCCEEEEEec
Confidence            65544  46779998 99988877766

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.89  E-value=9.3e-07  Score=82.31  Aligned_cols=222  Identities=9%  Similarity=0.027  Sum_probs=129.2

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .+.|++|++.|+..  .++.|..|+... . ..........+..+.++|++ .++++-     .....|.+|+...    
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~g-~-~~~~~~~~~~~~gl~~d~dG-~l~v~~-----~~~~~v~~~~~~g----  116 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWREDG-T-VDVLLDATAFTNGNAVDAQQ-RLVHCE-----HGRRAITRSDADG----  116 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETTS-C-EEEEEESCSCEEEEEECTTS-CEEEEE-----TTTTEEEEECTTS----
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCCC-C-EEEEeCCCCccceeeECCCC-CEEEEE-----CCCCEEEEECCCC----
Confidence            68999999954444  457999998732 2 22333344567889999984 343321     1123566666531    


Q ss_pred             Cceeeee-ecc----cceeEEEECCCCCeEEEEEEecccccCc--------eeecceeEEEEeeCCcceeeeecCCCCCe
Q 013871          132 QPLARRS-FFR----CSTVQLNWNRGSTGLLAVAQSDVDKTNQ--------SYYGESKLNYLTTDGTHEGLVPLRKEGPV  198 (434)
Q Consensus       132 ~~i~~~~-~~~----~~~~~~~ws~~G~~l~~~~~~~~d~~~~--------~~~g~~~l~~l~~~~~~~~~v~l~~~~~i  198 (434)
                      + +.... ...    .....+.+.++|+..  +++... .+..        .-.+...||.++..+.....+.  .....
T Consensus       117 ~-~~~~~~~~~~~~~~~~~~i~~d~dG~l~--~td~~~-g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          117 Q-AHLLVGRYAGKRLNSPNDLIVARDGAIW--FTDPPF-GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             C-EEEEECEETTEECSCCCCEEECTTSCEE--EECCSG-GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             C-EEEEEeccCCCccCCCCCEEECCCCCEE--EeCcCC-CccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence            1 11111 011    123468899999733  221100 0000        0011245788876433222332  23456


Q ss_pred             EEEEECcCCCEEEEEEccC----CCeEEEEeccccee------EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          199 HDVQWSYSGSEFAVVYGFM----PASATIFNKKCRPI------LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~----~~~v~l~d~~~~~~------~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      +.++|+|||+.++++....    .+.|.+||+....+      .....+....+++.++|++.+ +. .   +.|.+||.
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~---~gv~~~~~  265 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-G---TGVCVFDS  265 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-S---SEEEEECT
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-C---CcEEEECC
Confidence            7899999999887753321    26899999864322      122344456799999999544 33 1   25999998


Q ss_pred             cCCEEEEEeeCC-CceEEEECCCCCEEEEEEc
Q 013871          269 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       269 ~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~  299 (434)
                       +++.+..+..+ .+..++|+||++.|..++.
T Consensus       266 -~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          266 -DGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             -TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             -CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence             46666655544 5667999999999888876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.88  E-value=2.4e-06  Score=80.44  Aligned_cols=225  Identities=10%  Similarity=-0.013  Sum_probs=130.9

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK   82 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~   82 (434)
                      .+..|+|++..|+....    .++.|.+||..+++. ..+...    ..+.++.|++||++++.. .+.|.+|+..+...
T Consensus        52 egp~~~~~~~~l~~~d~----~~~~i~~~d~~~~~~-~~~~~~----~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCE
T ss_pred             cCCeEeCCCCEEEEEEC----CCCEEEEEECCCCcE-EEEECC----CcceEEEEeCCCeEEEEE-CCCEEEEECCCCcE
Confidence            36789998766655442    357899999887754 334322    345588999999988866 45699999765432


Q ss_pred             ceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           83 GILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        83 ~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .......    ...+.++.++|++...++....  ........||.+.+   ++.. ...........+.|+++|+.+++
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~--~~~~~~~~l~~~~~---g~~~-~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVT-KLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEE-EEEEEESSEEEEEECTTSCEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC--cCCCCceEEEEEeC---CcEE-EeeCCCcccCCeEEcCCCCEEEE
Confidence            1111110    1247789999985422222111  11122344555543   3222 11111123457899999998766


Q ss_pred             EEEecccccCceeecceeEEEEeeC--Cc-c----eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTD--GT-H----EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP  230 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~--~~-~----~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~  230 (434)
                      ..+.           ...|+.++..  .+ .    .....+. ..+....+++.++|..++.  ....+.|.+||.+++.
T Consensus       196 ~~~~-----------~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~~g~~  262 (326)
T 2ghs_A          196 VDTK-----------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDTDGNH  262 (326)
T ss_dssp             EETT-----------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECTTCCE
T ss_pred             EECC-----------CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECCCCCE
Confidence            4211           1135555543  11 1    1111222 1345678999999976553  3345689999987665


Q ss_pred             eEEe--CCcCeeEEEEC-CCCCeEEEEec
Q 013871          231 ILEL--GSGPYNTVRWN-PKGKFLCLAGF  256 (434)
Q Consensus       231 ~~~~--~~~~~~~i~~S-P~g~~l~~~~~  256 (434)
                      +..+  +...+.+++|+ |+++.|.++..
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            5544  45568899998 99887766543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=4.6e-07  Score=86.03  Aligned_cols=259  Identities=8%  Similarity=-0.027  Sum_probs=140.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecC----cCCCCCCeeeecCCCcEEEEec------CCe
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKN----MTKTTWPSIRFSSDEAVACRMA------TNE   71 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~----~~~~~~~~~~~S~d~~~la~~~------~~~   71 (434)
                      +..|+++|+|+.+++..+..   ++.++||.+.+|+ +..|....    .+......+++++++++.+.-.      +..
T Consensus        19 p~~va~~~~g~~~v~~~~~~---~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           19 PGNITLTPDGRLFLSLHQFY---QPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             EEEEEECTTSCEEEEECGGG---CCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred             cceEEECCCCCEEEEeCCCC---CCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence            46789999999999865432   2225666655664 34443210    0113344789999998776542      479


Q ss_pred             EEEEeCCCCCCceeeeeec------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           72 IQFFDTTDFPKGILYRLRV------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      |.+||+.+........+..      ..+..++++|+++ .+ ++...+.+....|.+|++.+   ++.......+..-..
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~-yvtd~~~~~~~~i~v~d~~~---g~~~r~~~~~~~~~~  169 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHN-FV-YISDPAPDDKAALIRVDLQT---GLAARVLQGYPGIAP  169 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTT-EE-EEEECCSGGGCEEEEEETTT---CCEEEECTTCTTTSC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCC-EE-EEEcCccCCCCeEEEEECCC---CCEEEEecCCCcccc
Confidence            9999987643222222211      2357889998633 22 22221111345788888865   333222211100000


Q ss_pred             -EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          146 -QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 -~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                       ...+..+|..+                     +..+..+. ..  .+  ...+..++|+|||+.+++. ......+..+
T Consensus       170 ~~~~~~~~g~~~---------------------~~~~~~g~-~~--~~--~~~~~gia~s~dg~~ly~~-~~~~~~l~~~  222 (343)
T 2qe8_A          170 EDIDLVIDGVPV---------------------QIGQPDGT-VI--RP--HLGVNGIVLDAENEWLYLS-PMHSTSMYRI  222 (343)
T ss_dssp             CSCCCEETTEEC---------------------BEECTTSC-EE--CC--CCCEEEEEECTTSCEEEEE-ESSCSEEEEE
T ss_pred             cccceeECCEEE---------------------EeccCCCc-ee--ce--ecccceeEeccCCCEEEEE-eCCCCeEEEE
Confidence             01111122211                     11111111 00  01  1346789999999988864 2223366666


Q ss_pred             ecccc------------eeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---CCceEEEEC
Q 013871          225 NKKCR------------PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWS  288 (434)
Q Consensus       225 d~~~~------------~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---~~~~~~~ws  288 (434)
                      +....            .+..+ +.+....++++++|+++++..   ..+.|.+||.++++.......   ..+..++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~---~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDL---AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEG---GGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEcc---CCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            64210            01111 233456799999998776654   236999999866654333322   256679999


Q ss_pred             CCCCEEEEEEc
Q 013871          289 PDGRYFMTATT  299 (434)
Q Consensus       289 pdg~~l~tas~  299 (434)
                      ++|+.++++..
T Consensus       300 ~~g~l~v~~~~  310 (343)
T 2qe8_A          300 SDGYLYFDCNQ  310 (343)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCCcEEEEeCc
Confidence            99998887765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.87  E-value=4.3e-07  Score=83.57  Aligned_cols=181  Identities=10%  Similarity=0.108  Sum_probs=123.8

Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecc-cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC
Q 013871          115 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~-~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                      ...+.|.+|+..+   ++.+-+..... .....+.+.|+|+.++ .  .  +.         .++.++..+...-.+...
T Consensus        12 ~~~~~v~~~d~~t---G~~~w~~~~~~~~~~~~~~~~pdG~ilv-s--~--~~---------~V~~~d~~G~~~W~~~~~   74 (276)
T 3no2_A           12 SGWNKIAIINKDT---KEIVWEYPLEKGWECNSVAATKAGEILF-S--Y--SK---------GAKMITRDGRELWNIAAP   74 (276)
T ss_dssp             TTCSEEEEEETTT---TEEEEEEECCTTCCCCEEEECTTSCEEE-E--C--BS---------EEEEECTTSCEEEEEECC
T ss_pred             CCCCEEEEEECCC---CeEEEEeCCCccCCCcCeEECCCCCEEE-e--C--CC---------CEEEECCCCCEEEEEcCC
Confidence            3456778888766   56665555443 3556788899998554 1  1  11         244444433322222332


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC--C------cCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG--S------GPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~--~------~~~~~i~~SP~g~~l~~~~~~~~~g~i~i  265 (434)
                      ....++++++.|+|+.++..++ .++.+..+|.+++.+.++.  .      .....+.+.++|++|++..   .++.|..
T Consensus        75 ~~~~~~~~~~~~dG~~lv~~~~-~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~---~~~~v~~  150 (276)
T 3no2_A           75 AGCEMQTARILPDGNALVAWCG-HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF---ATSEVRE  150 (276)
T ss_dssp             TTCEEEEEEECTTSCEEEEEES-TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET---TTTEEEE
T ss_pred             CCccccccEECCCCCEEEEecC-CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec---CCCEEEE
Confidence            2346889999999998885333 1568888888887766652  1      1344578899999998765   4579999


Q ss_pred             EEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee
Q 013871          266 WDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM  323 (434)
Q Consensus       266 wd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~  323 (434)
                      ||.+ ++.+..+..+ .+..+...++|+.++++..      ++.|..+|.. |+.+.+..
T Consensus       151 ~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~------~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          151 IAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD------AHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             ECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT------TSEEEEECTTTCCEEEEEE
T ss_pred             ECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC------CCeEEEEeCcCCcEEEEec
Confidence            9998 9999888764 4556788999999988877      6778899987 88876654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.85  E-value=7.8e-06  Score=74.34  Aligned_cols=249  Identities=10%  Similarity=0.024  Sum_probs=142.3

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcE-------EEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEA-------VYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP   81 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~-------~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~   81 (434)
                      |.+|+...      .+.|+.+++.....       +.....     .....++|++++..|...  .++.|.+++.....
T Consensus         1 ~~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~-----~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~   69 (267)
T 1npe_A            1 GTHLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPA-----KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE   69 (267)
T ss_dssp             CEEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEE-----EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred             CcEEEEEc------CCeEEEEEecCcccccccceeeecCCC-----CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC
Confidence            55666655      24688888765431       111111     112278999977655554  35799999986533


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ..............++++|+++. +- +..   ...+.|.++++..   ................+.++|++..|.+.. 
T Consensus        70 ~~~~~~~~~~~p~~ia~d~~~~~-ly-v~d---~~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~-  140 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALDHLGRT-IF-WTD---SQLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVRGNLYWTD-  140 (267)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTE-EE-EEE---TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTTTEEEEEE-
T ss_pred             cEEEEECCCCCccEEEEEecCCe-EE-EEE---CCCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCCCEEEEEE-
Confidence            21111112346788899986332 22 221   1235777777753   111111111112345788888777765532 


Q ss_pred             ecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCe
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPY  239 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~  239 (434)
                      ..  .      ....|+.+..++.....+....-.....++++|++..+.++ ....+.|.++|..+.....+  ....-
T Consensus       141 ~~--~------~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~~~~P  211 (267)
T 1npe_A          141 WN--R------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQYP  211 (267)
T ss_dssp             CC--S------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCCSE
T ss_pred             CC--C------CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecCCCCc
Confidence            10  0      01235666655543222221223456889999998888774 45567999999976543333  11222


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCC
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGR  292 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~  292 (434)
                      ..++  +++..|.++..++  +.|..+|..+++.+..+...   ....+++.||+.
T Consensus       212 ~gi~--~d~~~lyva~~~~--~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          212 FAVT--SYGKNLYYTDWKT--NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEE--EETTEEEEEETTT--TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             eEEE--EeCCEEEEEECCC--CeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            3454  4567777777654  69999999999888877543   355688888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.79  E-value=3.7e-05  Score=70.32  Aligned_cols=231  Identities=11%  Similarity=-0.021  Sum_probs=135.5

Q ss_pred             CeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC
Q 013871           53 PSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL  129 (434)
Q Consensus        53 ~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~  129 (434)
                      ..+.+.+||++.+.. .++.|.+|+.. .. .....+.  ...+..+.+++++.-.++    .  ...+.|..++...  
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~----~--~~~~~v~~~d~~g--   92 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GR-IKEFEVPTPDAKVMCLIVSSLGDIWFT----E--NGANKIGKLSKKG--   92 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEE----E--TTTTEEEEECTTS--
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-Cc-eEEEECCCCCCcceeEEECCCCCEEEE----e--cCCCeEEEECCCC--
Confidence            378899999987776 46799999976 22 1211221  245778888887432222    1  1124566665431  


Q ss_pred             CCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEECcCCC
Q 013871          130 QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGS  208 (434)
Q Consensus       130 ~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~wspdg~  208 (434)
                       ................+.+.++|... +. ..          +...|+.++..+. ...+.+. ....++.+++.++|+
T Consensus        93 -~~~~~~~~~~~~~~~~i~~~~~g~l~-v~-~~----------~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~g~  158 (300)
T 2qc5_A           93 -GFTEYPLPQPDSGPYGITEGLNGDIW-FT-QL----------NGDRIGKLTADGT-IYEYDLPNKGSYPAFITLGSDNA  158 (300)
T ss_dssp             -CEEEEECSSTTCCEEEEEECSTTCEE-EE-ET----------TTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSS
T ss_pred             -CeEEecCCCCCCCCccceECCCCCEE-EE-cc----------CCCeEEEECCCCC-EEEccCCCCCCCceeEEECCCCC
Confidence             11111111112345677788887632 22 11          1123556655433 2223333 245688999999998


Q ss_pred             EEEEEEccCCCeEEEEecccceeE-Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-ee--CCCc
Q 013871          209 EFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TR--AECS  282 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~~~~-~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~--~~~~  282 (434)
                      .++  +....+.|..||..+.... ..  +......++++++|+++++..   ..+.|.+||. +++.... ..  ...+
T Consensus       159 l~v--~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~-~g~~~~~~~~~~~~~~  232 (300)
T 2qc5_A          159 LWF--TENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEI---MGNKIGRITT-TGEISEYDIPTPNARP  232 (300)
T ss_dssp             EEE--EETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEE--EecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEcc---CCCEEEEEcC-CCcEEEEECCCCCCCc
Confidence            444  3444678999998544332 11  234567899999997665443   2358999998 4443332 22  2256


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      ..++++++|+.+++...      ++.|.+|+.+|...
T Consensus       233 ~~i~~d~~g~l~v~~~~------~~~i~~~~~~g~~~  263 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWG------ANQIGRITNDNTIQ  263 (300)
T ss_dssp             EEEEECSTTCEEEEETT------TTEEEEECTTSCEE
T ss_pred             eEEEECCCCCEEEeccC------CCeEEEECCCCcEE
Confidence            67999999996555544      78999999877644

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.76  E-value=2.6e-05  Score=70.84  Aligned_cols=248  Identities=8%  Similarity=-0.036  Sum_probs=143.0

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871           61 EAVACRMATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      |.+|..+..+.|+.+++......     ............++|+|+++ .+ +|..   ...+.|..+++..   .....
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~-~l-y~~d---~~~~~I~~~~~~g---~~~~~   72 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK-VV-YWTD---ISEPSIGRASLHG---GEPTT   72 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT-EE-EEEE---TTTTEEEEEESSS---CCCEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC-EE-EEEE---CCCCEEEEEecCC---CCcEE
Confidence            34566665568888887653211     11112233567889998633 32 2222   1235778888754   22211


Q ss_pred             eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871          136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g  215 (434)
                      ...........+.+++++..|.+. +.          +...++.++..+.....+..........++++|++..+.+...
T Consensus        73 ~~~~~~~~p~~ia~d~~~~~lyv~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~  141 (267)
T 1npe_A           73 IIRQDLGSPEGIALDHLGRTIFWT-DS----------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (267)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCccEEEEEecCCeEEEE-EC----------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEEC
Confidence            111111244577888877776553 11          1123566665554322221111245689999998777766432


Q ss_pred             cC-CCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCC
Q 013871          216 FM-PASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPD  290 (434)
Q Consensus       216 ~~-~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspd  290 (434)
                      .. .+.|..++..+.....+   ....-+.++++|+++.|.++..++  +.|.++|.+.......... ..+..++  +|
T Consensus       142 ~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d  217 (267)
T 1npe_A          142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLEGLQYPFAVT--SY  217 (267)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEECCCSEEEEE--EE
T ss_pred             CCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCceEEEecCCCCceEEE--Ee
Confidence            21 45888888875543333   233467899999999888887654  7999999876543333332 2333454  45


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeec-Cceeeeeecc---cceeeEEEcCC
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD---KLFQAEWKPVS  336 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~~~---~~~~~~w~p~~  336 (434)
                      +.+|+.+...     .+.|.+++.. |+.+......   ..+.+.+.|+.
T Consensus       218 ~~~lyva~~~-----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          218 GKNLYYTDWK-----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTEEEEEETT-----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCEEEEEECC-----CCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            6777777653     6789999985 6766665443   36777777764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.76  E-value=8.1e-06  Score=85.89  Aligned_cols=200  Identities=11%  Similarity=-0.022  Sum_probs=110.2

Q ss_pred             Ceeeec-CCCcEEEEecC--C----eEEEEeCCCC-CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEE
Q 013871           53 PSIRFS-SDEAVACRMAT--N----EIQFFDTTDF-PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        53 ~~~~~S-~d~~~la~~~~--~----~i~v~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ..++|| |||++||...+  +    +|+++|+... ... ...+.. ...++.|||++ ..|++...+..+.+..|.+++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~-~~~~~~WspDg-~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSG-TNGEIVWGPDH-TSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEE-ECSCCEECSST-TEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccC-ceeeEEEecCC-CEEEEEEECCCCCCCEEEEEE
Confidence            368999 99999998742  1    5999998875 321 111111 13578999994 555544333334445777787


Q ss_pred             cCCCCCCCc--eeeee-ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee--eec-C-CCCC
Q 013871          125 CGKDLQSQP--LARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPL-R-KEGP  197 (434)
Q Consensus       125 ~~~~~~~~~--i~~~~-~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~--v~l-~-~~~~  197 (434)
                      +.+   .+.  ..... ....-...+.|+|||++|++.....         +...||++++.+.....  ..+ . ..++
T Consensus       254 lgt---~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          254 MGK---LQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP---------ETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTS---CGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS---------SCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCC---CchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC---------CCceEEEEECCCCCCCceeEEeecCCCCc
Confidence            755   221  11111 1112245788999999988765321         23468888876542111  222 2 2345


Q ss_pred             eEEEEECcCCCEEEEEEccC---CCeEEEEeccc-ceeEE--e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          198 VHDVQWSYSGSEFAVVYGFM---PASATIFNKKC-RPILE--L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~---~~~v~l~d~~~-~~~~~--~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..++.|+ +|+.|++.+...   ...|..+|+.. .....  + +...+.--.|+++++.|++....+....|+++|+
T Consensus       322 ~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          322 RYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             eEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            5555554 378888765442   23777778763 22222  2 2222222234455676666554332336777775

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.75  E-value=3.7e-06  Score=88.54  Aligned_cols=249  Identities=9%  Similarity=-0.039  Sum_probs=132.7

Q ss_pred             ceEEec-CCCcEEEEEecCCCCCCCcEEEEEcCCC-cEEEE-EeecCcCCCCCCeeeecCCCcEEEEec-C-----CeEE
Q 013871            3 LLLTCL-RVGLIIQTFQKSSTPQEKNVILWKTETG-EAVYQ-LFQKNMTKTTWPSIRFSSDEAVACRMA-T-----NEIQ   73 (434)
Q Consensus         3 ~~l~fS-P~g~~L~t~~~~~~~~d~~v~iWd~~~g-~~~~~-~~~~~~~~~~~~~~~~S~d~~~la~~~-~-----~~i~   73 (434)
                      ...+|| |||++|+......+.+...|+++|+.+| +.+.. +..      ....+.|||||+.|++.. +     ..|.
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~------~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG------TNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE------ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC------ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            467899 9999999776544444457999999998 63221 111      123679999998887763 2     2677


Q ss_pred             EEeCCCCCCceeeee--ec-CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc-eeeeee-cccceeEEE
Q 013871           74 FFDTTDFPKGILYRL--RV-PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP-LARRSF-FRCSTVQLN  148 (434)
Q Consensus        74 v~~~~~~~~~~~~~~--~~-~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~-i~~~~~-~~~~~~~~~  148 (434)
                      ++++...........  .. ....++.|||+ +..|++....  .....|.++++.... ... +..+.. .......+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-g~~l~~~~~~--~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-TNTLCIGSQS--PETAEVHLLDLRKGN-AHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTT-SSEEEEEEEC--SSCEEEEEEESSSCT-TCCCEEESSCCCTTCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCC-CCEEEEEecC--CCCceEEEEECCCCC-CCceeEEeecCCCCceEEEe
Confidence            788765322111111  11 23567899999 5666554432  234577888876521 111 022211 112222333


Q ss_pred             ECCCCCeEEEEEEecccccCceeecceeEEEEeeCC-cc-ee-eeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEE
Q 013871          149 WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-TH-EG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATI  223 (434)
Q Consensus       149 ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~-~~-~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l  223 (434)
                      |+ .|..|++.+..+    +.   +...|+.++..+ .. .. .++-.....+.++.|  +++.+++. ...++  .+.+
T Consensus       327 ~~-~g~~l~~~t~~~----~a---~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~-~~~~g~~~l~~  395 (751)
T 2xe4_A          327 MH-GTSHLVILTNEG----GA---VNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVA-GRRAGLTRIWT  395 (751)
T ss_dssp             EE-TTTEEEEEECTT----TC---TTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEE-EEETTEEEEEE
T ss_pred             ee-eCCEEEEEeCCC----CC---CCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEE-EEeCCEEEEEE
Confidence            32 378877764322    00   223577777653 11 12 222211123445555  46677664 34455  5667


Q ss_pred             Eec-------ccce-eEEe--CC-cCeeEEEE----CCCCCeE-EEEecCCCCCeEEEEEccCCE
Q 013871          224 FNK-------KCRP-ILEL--GS-GPYNTVRW----NPKGKFL-CLAGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       224 ~d~-------~~~~-~~~~--~~-~~~~~i~~----SP~g~~l-~~~~~~~~~g~i~iwd~~~~~  272 (434)
                      +|+       .+.. ...+  .. ..+..+.+    ++++..+ ++.+.-...+.++.+|+.+++
T Consensus       396 ~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          396 MMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             EECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             EecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            775       3333 4444  22 22233333    4577644 443333345789999988764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.74  E-value=2.5e-07  Score=88.86  Aligned_cols=126  Identities=9%  Similarity=-0.052  Sum_probs=92.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+ |+.++|  |++.+++.   .++.|.+||++..   .....+..+++++.+.+..  ++++.   .+|.|.+||++++
T Consensus        88 p~-V~~l~f--d~~~L~v~---~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~---~dG~L~v~dl~~~  156 (388)
T 1xip_A           88 PD-VIFVCF--HGDQVLVS---TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILN---SVNDLSALDLRTK  156 (388)
T ss_dssp             TT-EEEEEE--ETTEEEEE---ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEE---TTSEEEEEETTTC
T ss_pred             CC-eeEEEE--CCCEEEEE---cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEE---CCCCEEEEEccCC
Confidence            45 999999  99999974   5689999998522   2222345668888877653  66666   5689999999987


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceee---ee-----------ecccceeeEEEcCCC
Q 013871          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF---KK-----------MFDKLFQAEWKPVSP  337 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~---~~-----------~~~~~~~~~w~p~~~  337 (434)
                      .....  ...+++++|||+|  ++.+..      ||.+++|+..+..+.   ..           +...+..+.|-+...
T Consensus       157 ~~~~~--~~~Vs~v~WSpkG--~~vg~~------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          157 STKQL--AQNVTSFDVTNSQ--LAVLLK------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             CEEEE--EESEEEEEECSSE--EEEEET------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             ccccc--cCCceEEEEcCCc--eEEEEc------CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            65542  3478889999999  677777      999999999887752   22           123477888988766


Q ss_pred             CCCC
Q 013871          338 DKFG  341 (434)
Q Consensus       338 ~~~~  341 (434)
                      .++.
T Consensus       227 flv~  230 (388)
T 1xip_A          227 FLAV  230 (388)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.73  E-value=8.5e-06  Score=78.87  Aligned_cols=241  Identities=9%  Similarity=0.050  Sum_probs=131.6

Q ss_pred             Eec--CCCcEEEEEecCCCCCCCcEEEEEcCCC----cEEEEEeec----CcCCCCCCeeeecCCCcEEEEe-cC-----
Q 013871            6 TCL--RVGLIIQTFQKSSTPQEKNVILWKTETG----EAVYQLFQK----NMTKTTWPSIRFSSDEAVACRM-AT-----   69 (434)
Q Consensus         6 ~fS--P~g~~L~t~~~~~~~~d~~v~iWd~~~g----~~~~~~~~~----~~~~~~~~~~~~S~d~~~la~~-~~-----   69 (434)
                      .||  +++++|+.-+-    .+.+|.|.|+.+.    +.+..+...    ......-..+..+||| ++++. ++     
T Consensus        88 ~~~~~~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           88 NGKPNIERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG  162 (462)
T ss_dssp             TCCTTCCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred             ccCCCccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence            458  99999987652    4578999999755    555555200    0000011145778999 44444 43     


Q ss_pred             -CeEEEEeCCCCCCceeeeee-cC-C-eeEEEEeCCCCCeEEE-E----------ecCC--CCCCceEEEEEcCCCCCCC
Q 013871           70 -NEIQFFDTTDFPKGILYRLR-VP-G-VAAFEVSKAPGSHVAV-F----------VPES--KGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        70 -~~i~v~~~~~~~~~~~~~~~-~~-~-v~~~~~sp~~~~~ia~-~----------~~~~--~~~~~~v~i~~~~~~~~~~  132 (434)
                       +.|.++|..++......... .+ . -.++.|+|+.+.++.. |          .++.  .....+|.+|++..   .+
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~---~k  239 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK---RK  239 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT---TE
T ss_pred             CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC---Cc
Confidence             58999999876643222211 11 1 2357889986533322 1          0000  01246899999987   55


Q ss_pred             ceeeeeecc--cceeEE--EECCCCCeEEEEEEecc-cccCcee---eccee---EEEEeeCCcc-eeeee-cCC-----
Q 013871          133 PLARRSFFR--CSTVQL--NWNRGSTGLLAVAQSDV-DKTNQSY---YGESK---LNYLTTDGTH-EGLVP-LRK-----  194 (434)
Q Consensus       133 ~i~~~~~~~--~~~~~~--~ws~~G~~l~~~~~~~~-d~~~~~~---~g~~~---l~~l~~~~~~-~~~v~-l~~-----  194 (434)
                      .+.++....  .....+  .++|+|+++.+....+. |.++..+   +....   +..+++.... ...++ +..     
T Consensus       240 ~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          240 RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            555555421  122233  45999998877654111 1111111   00000   0111111100 00000 000     


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc----cceeEEeCCc----------------CeeEEEECCCCCeEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILELGSG----------------PYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~----~~~~~~~~~~----------------~~~~i~~SP~g~~l~~~  254 (434)
                      .....++.+||||+++.+ +....+.|.+||+.    ...+..+..+                .-..+.+||||++|+++
T Consensus       320 ~~~pa~I~lS~DGrfLYV-Snrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYL-SLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEE-EETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEE-EeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence            245678999999999887 45667799999974    2233333222                13679999999999988


Q ss_pred             e
Q 013871          255 G  255 (434)
Q Consensus       255 ~  255 (434)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.70  E-value=2.2e-05  Score=72.85  Aligned_cols=226  Identities=11%  Similarity=0.021  Sum_probs=127.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC-CeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT-NEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~-~~i~v~~~~~~~   81 (434)
                      ....|+|+|++|+....    .++.|..|+. +|+ +..+....   .....+.|++||+++++... +.|.+|+.. ..
T Consensus        48 egp~~~~~g~~l~~~d~----~~~~i~~~~~-~g~-~~~~~~~~---~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           48 EGPAWWEAQRTLVWSDL----VGRRVLGWRE-DGT-VDVLLDAT---AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             EEEEEEGGGTEEEEEET----TTTEEEEEET-TSC-EEEEEESC---SCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             cCCeEeCCCCEEEEEEC----CCCEEEEEeC-CCC-EEEEeCCC---CccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            46789999997665552    4578999997 565 34444332   33447899999998877644 689999875 22


Q ss_pred             Cceeeeee-----cCCeeEEEEeCCCCCeEEEEec--CC-----------CCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           82 KGILYRLR-----VPGVAAFEVSKAPGSHVAVFVP--ES-----------KGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        82 ~~~~~~~~-----~~~v~~~~~sp~~~~~ia~~~~--~~-----------~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      . ......     ...+.++.++|++. +... .+  ..           ....+.|..++..+   ++. .... ....
T Consensus       118 ~-~~~~~~~~~~~~~~~~~i~~d~dG~-l~~t-d~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~---g~~-~~~~-~~~~  189 (305)
T 3dr2_A          118 A-HLLVGRYAGKRLNSPNDLIVARDGA-IWFT-DPPFGLRKPSQGCPADPELAHHSVYRLPPDG---SPL-QRMA-DLDH  189 (305)
T ss_dssp             E-EEEECEETTEECSCCCCEEECTTSC-EEEE-CCSGGGSCGGGSCCCCCSSSCEEEEEECSSS---CCC-EEEE-EESS
T ss_pred             E-EEEEeccCCCccCCCCCEEECCCCC-EEEe-CcCCCccccccccccccccCCCeEEEEcCCC---CcE-EEEe-cCCC
Confidence            1 111111     22456788999853 2211 11  00           00113344444323   222 2222 2233


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc--eeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~--~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      ...+.|+|+|+.|++.. .....     .+...|+.+++.+..  ...+... ..+....+++.++|+.++   +. ...
T Consensus       190 p~gl~~spdg~~lyv~~-~~~~~-----~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv---~~-~~g  259 (305)
T 3dr2_A          190 PNGLAFSPDEQTLYVSQ-TPEQG-----HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS---SS-GTG  259 (305)
T ss_dssp             EEEEEECTTSSEEEEEE-CCC--------CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE---CC-SSE
T ss_pred             CcceEEcCCCCEEEEEe-cCCcC-----CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE---ec-CCc
Confidence            45789999999876642 21100     011235555443321  0111111 134456789999998444   33 346


Q ss_pred             EEEEecccceeEEeC-CcCeeEEEECCCCCeEEEEec
Q 013871          221 ATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       221 v~l~d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      |.+||.++..+..+. ...+..++|+|+++.|.+++.
T Consensus       260 v~~~~~~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          260 VCVFDSDGQLLGHIPTPGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             EEEECTTSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EEEECCCCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence            999999877766552 235788999999998888763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.68  E-value=7.9e-06  Score=79.54  Aligned_cols=198  Identities=8%  Similarity=0.008  Sum_probs=115.9

Q ss_pred             cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCc
Q 013871           90 VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQ  169 (434)
Q Consensus        90 ~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~  169 (434)
                      +.....++|+|++. +   |+.+.  ....|++|+...   +........ ..... +.|+++|..|++..   .+    
T Consensus       130 ~~~P~~la~d~~g~-l---yv~d~--~~~~I~~id~~~---g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d---~~----  191 (409)
T 3hrp_A          130 FKYMWGIAAVGNNT-V---LAYQR--DDPRVRLISVDD---NKVTTVHPG-FKGGK-PAVTKDKQRVYSIG---WE----  191 (409)
T ss_dssp             CCCEEEEEECSTTE-E---EEEET--TTTEEEEEETTT---TEEEEEEET-CCBCB-CEECTTSSEEEEEB---SS----
T ss_pred             cCCceEEEEeCCCC-E---EEEec--CCCcEEEEECCC---CEEEEeecc-CCCCc-eeEecCCCcEEEEe---cC----
Confidence            34577888988742 2   22221  345888998865   332222222 22233 89999999765531   11    


Q ss_pred             eeecceeEEEEeeCCccee-ee-e--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CC-c-
Q 013871          170 SYYGESKLNYLTTDGTHEG-LV-P--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GS-G-  237 (434)
Q Consensus       170 ~~~g~~~l~~l~~~~~~~~-~v-~--l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~-~-  237 (434)
                         +...++.++..+.... .+ .  ......+++++++|++..|.+  ...++.|..||........+      +. . 
T Consensus       192 ---~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv--~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          192 ---GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF--VDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             ---TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE--ECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ---CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE--EECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence               1113566665443321 11 0  112456789999996666665  33467899999875443332      11 1 


Q ss_pred             -CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC---------------CCceEEEECCCCCEEEEEE-cC
Q 013871          238 -PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTAT-TA  300 (434)
Q Consensus       238 -~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~---------------~~~~~~~wspdg~~l~tas-~~  300 (434)
                       |.+.++|+|++..|.++...  .+.|+.||.+.......-..               ..+..++++|+|+.+++-+ . 
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~--~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-  343 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQN--LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-  343 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETT--TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-
T ss_pred             CccccEEEeCCCCEEEEEeCC--CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-
Confidence             22489999976666666543  37899999765421111110               1355699999999666555 5 


Q ss_pred             CceeeCCcEEEEe-ecCce
Q 013871          301 PRLQIDNGIKIFH-HNGSL  318 (434)
Q Consensus       301 prl~~D~~i~iw~-~~g~~  318 (434)
                           ++.|+.|+ -+|.+
T Consensus       344 -----~~~I~~~~~~~G~v  357 (409)
T 3hrp_A          344 -----GYCLRKLDILDGYV  357 (409)
T ss_dssp             -----TCEEEEEETTTTEE
T ss_pred             -----CCEEEEEECCCCEE
Confidence                 88999999 45654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.67  E-value=3.3e-06  Score=81.05  Aligned_cols=215  Identities=13%  Similarity=0.068  Sum_probs=136.0

Q ss_pred             CCCeeeecCCCcEEEEecCCeEEEEeCCCCC---------CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEE
Q 013871           51 TWPSIRFSSDEAVACRMATNEIQFFDTTDFP---------KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~  121 (434)
                      .+..+++++...+++.++.+.+.+|++.+..         ........++.|..++|  + +..+++-      ..+.|.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d-~~~L~v~------~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--H-GDQVLVS------TRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--E-TTEEEEE------ESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--C-CCEEEEE------cCCcEE
Confidence            4568999999999999988899999965422         11123344566999999  4 5666553      236899


Q ss_pred             EEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEE
Q 013871          122 IYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDV  201 (434)
Q Consensus       122 i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v  201 (434)
                      +|++.+.   ........+...+..+.|.+..  ++++. .  |       |  .|+.+++......  .+  ...|.++
T Consensus       110 v~dv~sl---~~~~~~~~~~~~v~~i~~~~p~--~av~~-~--d-------G--~L~v~dl~~~~~~--~~--~~~Vs~v  168 (388)
T 1xip_A          110 SLDLEEL---SEFRTVTSFEKPVFQLKNVNNT--LVILN-S--V-------N--DLSALDLRTKSTK--QL--AQNVTSF  168 (388)
T ss_dssp             EEESSST---TCEEEEEECSSCEEEEEECSSE--EEEEE-T--T-------S--EEEEEETTTCCEE--EE--EESEEEE
T ss_pred             EEEchhh---hccCccceeecceeeEEecCCC--EEEEE-C--C-------C--CEEEEEccCCccc--cc--cCCceEE
Confidence            9999874   2333444556667777777652  44332 1  1       1  3566665543222  22  3589999


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEeccccee---EEe-----------CCcCeeEEEECCCCCeEEEEecCC---C-----
Q 013871          202 QWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-----------GSGPYNTVRWNPKGKFLCLAGFGN---L-----  259 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~v~l~d~~~~~~---~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~---~-----  259 (434)
                      +|||+|  ++  .|..++++.+|+..+..+   ..+           |...+.+|.|.+++.++++-+...   .     
T Consensus       169 ~WSpkG--~~--vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~  244 (388)
T 1xip_A          169 DVTNSQ--LA--VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSY  244 (388)
T ss_dssp             EECSSE--EE--EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCC
T ss_pred             EEcCCc--eE--EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCC
Confidence            999999  44  367789999998876553   334           457789999999999998754322   1     


Q ss_pred             CCeEEEEEccCCEE-EEEeeC-----------C--Cc-eEEEECCCCCEEEEEEc
Q 013871          260 PGDMAFWDYVDGKQ-LGTTRA-----------E--CS-VTSEWSPDGRYFMTATT  299 (434)
Q Consensus       260 ~g~i~iwd~~~~~~-i~~~~~-----------~--~~-~~~~wspdg~~l~tas~  299 (434)
                      +-.++|.....+.. ...+..           +  .. ..-.|.|+.+.|+..++
T Consensus       245 ~~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~S  299 (388)
T 1xip_A          245 DQKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLAS  299 (388)
T ss_dssp             CEEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEE
T ss_pred             cceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeC
Confidence            22577777444432 122211           1  11 11589888877665554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.52  E-value=4.4e-06  Score=83.62  Aligned_cols=267  Identities=6%  Similarity=-0.014  Sum_probs=158.6

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC------------------------------C------CCCCee
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT------------------------------K------TTWPSI   55 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~------------------------------~------~~~~~~   55 (434)
                      .|...|+   +...+.|+|+-+-+++++..+.-.+..                              .      ..-+.+
T Consensus        14 ~~~~f~s---~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~   90 (595)
T 1fwx_A           14 DYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV   90 (595)
T ss_dssp             SEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCE
T ss_pred             cEEEEee---CCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCcc
Confidence            4666666   345689999999999988776532210                              0      011234


Q ss_pred             eecC-----CCcEEEEec--CCeEEEEeCCCCCCceeeeeec-CCeeEEEE-e-CCCCCeEEEE---e--cCC-------
Q 013871           56 RFSS-----DEAVACRMA--TNEIQFFDTTDFPKGILYRLRV-PGVAAFEV-S-KAPGSHVAVF---V--PES-------  113 (434)
Q Consensus        56 ~~S~-----d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~-s-p~~~~~ia~~---~--~~~-------  113 (434)
                      ..|.     ||+++....  ++.|.+.|+..+.......+.. .+...+.+ + |+++..++.-   .  +..       
T Consensus        91 ~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~  170 (595)
T 1fwx_A           91 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  170 (595)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             ccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence            4454     888887763  4589999999876433334432 45778887 5 7744433221   1  110       


Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee-----cceeEEEEeeCCccee
Q 013871          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY-----GESKLNYLTTDGTHEG  188 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~-----g~~~l~~l~~~~~~~~  188 (434)
                      ....+.+.+.+..+   .+.+.+...-. .--.+..+|+|+++.+......  .+....     -...+..++....   
T Consensus       171 ~~~~~~vtvID~~t---~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se--~~~~i~~~~~~~~d~v~V~~~~~~---  241 (595)
T 1fwx_A          171 ANYVNVFTAVDADK---WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSE--KGMTLPEMTAAEMDHIVVFNIAEI---  241 (595)
T ss_dssp             GGEEEEEEEEETTT---TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTT--CCSSHHHHTCCSEEEEEEEEHHHH---
T ss_pred             cccCceEEEEECCC---CeEEEEEEeCC-CccceEECCCCCEEEEEecCcc--cCcchhhccccccceEEEeeccce---
Confidence            12235788888876   66666665433 3345678999998765432110  000000     0001111111100   


Q ss_pred             eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc---ce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          189 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       189 ~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~---~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                                  .++.++|+...+      +.|.+.|.+.   .. +..+. ...-.++.+||||+++++++.+  ..+|
T Consensus       242 ------------~~~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~--s~~V  301 (595)
T 1fwx_A          242 ------------EKAIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL--SPTV  301 (595)
T ss_dssp             ------------HHHHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT--SSBE
T ss_pred             ------------eEeccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC--CCeE
Confidence                        013456665443      3599999875   23 33332 2344689999999999998754  3799


Q ss_pred             EEEEccCCE------------EEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          264 AFWDYVDGK------------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       264 ~iwd~~~~~------------~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .++|+.+.+            .+.... +.....++|+||| ++.++..-     |+.|.+|++..
T Consensus       302 sVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~  361 (595)
T 1fwx_A          302 TVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFL-----DSQVVKWNIED  361 (595)
T ss_dssp             EEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETT-----TTEEEEEEHHH
T ss_pred             EEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEec-----CCcEEEEEhhH
Confidence            999999653            344443 3478889999999 66665542     99999999965

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.21  E-value=0.00029  Score=66.45  Aligned_cols=180  Identities=8%  Similarity=0.001  Sum_probs=105.6

Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCC-----CCCeEEEEECcCCCEEEEEEc
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-----EGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-----~~~i~~v~wspdg~~~av~~g  215 (434)
                      .....+.++++|+ |.++ +.....     .+...|+.++...+. ...+.+..     ...+++++++|++..+.+ +.
T Consensus        67 ~~p~gv~~d~~g~-L~v~-D~g~~~-----~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yv-td  138 (343)
T 2qe8_A           67 DTVLGIKSDGNGI-VWML-DNGNQS-----KSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYI-SD  138 (343)
T ss_dssp             SCEEEEEECSSSE-EEEE-ECHHHH-----TSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEE-EE
T ss_pred             eEeeEEEEcCCCc-EEEE-cCCCCc-----CCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEE-Ec
Confidence            3556788899876 4332 221000     012246666655332 33334321     235689999987665554 44


Q ss_pred             c---CCCeEEEEecccceeEE-eCC-------------------------------cCeeEEEECCCCCeEEEEecCCCC
Q 013871          216 F---MPASATIFNKKCRPILE-LGS-------------------------------GPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       216 ~---~~~~v~l~d~~~~~~~~-~~~-------------------------------~~~~~i~~SP~g~~l~~~~~~~~~  260 (434)
                      .   ..+.|.+||+....+.. ++.                               ...+.|+|||+|+.|+++....  
T Consensus       139 ~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~--  216 (343)
T 2qe8_A          139 PAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS--  216 (343)
T ss_dssp             CCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC--
T ss_pred             CccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC--
Confidence            4   56799999986332222 211                               1257899999999888887432  


Q ss_pred             CeEEEEEcc---CCE--------EEEEe-eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee---c
Q 013871          261 GDMAFWDYV---DGK--------QLGTT-RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM---F  324 (434)
Q Consensus       261 g~i~iwd~~---~~~--------~i~~~-~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~---~  324 (434)
                      ..|+.+|..   .+.        .+... ....+..++++++|+.+++...      ++.|.+|+. +|+......   .
T Consensus       217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~------~~~V~~~d~~~G~~~~~~~~~~~  290 (343)
T 2qe8_A          217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLA------HSAIGVITSADRAYKLLVTDEKL  290 (343)
T ss_dssp             SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGG------GTEEEEEETTTTEEEEEEECGGG
T ss_pred             CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccC------CCeEEEEECCCCCEEEEEECCce
Confidence            367766643   110        01111 1123345899999998888777      899999999 887533222   2


Q ss_pred             ccceeeEEEcCCC
Q 013871          325 DKLFQAEWKPVSP  337 (434)
Q Consensus       325 ~~~~~~~w~p~~~  337 (434)
                      .....+++.|++.
T Consensus       291 ~~p~~va~~~~g~  303 (343)
T 2qe8_A          291 SWTDSFNFGSDGY  303 (343)
T ss_dssp             SCEEEEEECTTSC
T ss_pred             ecCCeeEECCCCc
Confidence            3356778887654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.13  E-value=0.001  Score=68.87  Aligned_cols=58  Identities=17%  Similarity=0.276  Sum_probs=45.5

Q ss_pred             CeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          261 GDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      |.|..||+.+++.+..+.... .....++.+|..+++++.      |+.+++||. +|+++.....
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~------dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA------DGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC------CCcEEEEECCCCceeeeeeC
Confidence            789999999999988876542 233456678888888877      999999997 6888776644

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.11  E-value=0.00092  Score=60.46  Aligned_cols=194  Identities=7%  Similarity=0.028  Sum_probs=112.3

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      ..|.|+|||...++.+.+   .+..|.+.|+.+|+.+.++....   ... ...++.++..|..+  .++.+.++|..++
T Consensus        24 ~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l~~---~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~   96 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKMDD---SYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTL   96 (266)
T ss_dssp             EEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEETTCSEEEEEETTTT
T ss_pred             ccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEecCC---Ccc-eEEEEEeCCEEEEEEecCCEEEEEECCCC
Confidence            478999997555544321   35789999999999998876532   111 22334445444444  4689999999876


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----ceeEEEECCCCCe
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----STVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----~~~~~~ws~~G~~  155 (434)
                      ..  ..++....-....++++++..+.   .+  + .+.|.+++..+   .+.+........     ....+.|. +| .
T Consensus        97 ~v--~~~i~~g~~~g~glt~Dg~~l~v---s~--g-s~~l~viD~~t---~~v~~~I~Vg~~~~p~~~~nele~~-dg-~  163 (266)
T 2iwa_A           97 SN--IKNFTHQMKDGWGLATDGKILYG---SD--G-TSILYEIDPHT---FKLIKKHNVKYNGHRVIRLNELEYI-NG-E  163 (266)
T ss_dssp             EE--EEEEECCSSSCCEEEECSSSEEE---EC--S-SSEEEEECTTT---CCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred             cE--EEEEECCCCCeEEEEECCCEEEE---EC--C-CCeEEEEECCC---CcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence            53  23343331123446667444332   22  2 46888888876   455555443221     22355666 55 4


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC------------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR------------KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~------------~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      |.+.  .         +....+..++..... ...+.+.            .....+.++|+|++++|.| ++..-.++.
T Consensus       164 lyvn--~---------~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV-Tgk~~~~v~  231 (266)
T 2iwa_A          164 VWAN--I---------WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV-TGKLWPKLF  231 (266)
T ss_dssp             EEEE--E---------TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE-EETTCSEEE
T ss_pred             EEEe--c---------CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE-ECCCCCeEE
Confidence            3321  1         112246666664432 2334332            0135589999999998887 566566888


Q ss_pred             EEeccc
Q 013871          223 IFNKKC  228 (434)
Q Consensus       223 l~d~~~  228 (434)
                      ..++..
T Consensus       232 ~i~l~~  237 (266)
T 2iwa_A          232 EIKLHL  237 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            877643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.06  E-value=0.0033  Score=65.14  Aligned_cols=76  Identities=13%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             CeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCE
Q 013871          219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRY  293 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~  293 (434)
                      +.|..||+++ +.+-++ +..+.....++.+|.++++++   .+|.+++||.++++.+..+..+.   ..-+.|++||+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT---ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ  533 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC---CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEE
Confidence            5788899864 444444 234455566777888888876   66899999999999999887542   223788899986


Q ss_pred             EEEE
Q 013871          294 FMTA  297 (434)
Q Consensus       294 l~ta  297 (434)
                      ++..
T Consensus       534 ~v~~  537 (677)
T 1kb0_A          534 YVSV  537 (677)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.05  E-value=0.0041  Score=59.66  Aligned_cols=223  Identities=7%  Similarity=-0.034  Sum_probs=117.4

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      ...|+..++..+.........    .....++|.+.+..|...  ..+.|+.++...................+++.+.+
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~----~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~  170 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNL----ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVH  170 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTT
T ss_pred             CccceeeccCCCcEEEEecCC----CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCC
Confidence            356777787655432222211    223378999766655544  45799999987533211111122345667777753


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +. | +|...   ....|.++++..   ..........-.....+...|.+..|.+. ..  ..       ...|+.++.
T Consensus       171 g~-l-Y~~d~---~~~~I~~~~~dg---~~~~~l~~~~l~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r~~~  232 (386)
T 3v65_B          171 DK-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSM  232 (386)
T ss_dssp             TE-E-EEEET---TTTEEEECBTTS---CSCEEEECSSCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEET
T ss_pred             Ce-E-EEEcC---CCCeEEEEeCCC---CceEEeecCCCCCCcEEEEEcCCCeEEEe-cc--CC-------CCEEEEEeC
Confidence            32 2 22222   123566655543   11111111111233567778877766542 11  11       134777777


Q ss_pred             CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      .+.....+....-..-+.++|+|++..|.++ ....+.|..+|+.+.....+   ....-..|++  ++..|.++..++ 
T Consensus       233 dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~-  308 (386)
T 3v65_B          233 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT-  308 (386)
T ss_dssp             TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT-
T ss_pred             CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCC-
Confidence            7653333222222346789999988888874 44567999999876443333   2223345666  344555555443 


Q ss_pred             CCeEEEEEccCCEEE
Q 013871          260 PGDMAFWDYVDGKQL  274 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i  274 (434)
                       +.|..+|..+++.+
T Consensus       309 -~~V~~~~~~~G~~~  322 (386)
T 3v65_B          309 -KSINSANKFTGKNQ  322 (386)
T ss_dssp             -TEEEEEETTTCCSC
T ss_pred             -CeEEEEECCCCcce
Confidence             57777775555433

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.03  E-value=0.01  Score=56.08  Aligned_cols=220  Identities=7%  Similarity=-0.020  Sum_probs=116.7

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      ..|+..++..... ..+... .  .....++|.+.+..|...  ..+.|+.++...................+++.+.++
T Consensus        53 ~~I~~i~~~g~~~-~~~~~~-~--~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g  128 (349)
T 3v64_C           53 IDIRQVLPHRSEY-TLLLNN-L--ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHD  128 (349)
T ss_dssp             SCEEEECTTSCCE-EEEECS-C--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             cceEEEeCCCCee-EEeecC-C--CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCC
Confidence            4577777655443 222221 1  223378999866655544  357999999876432121111233456778877533


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      . | +|...   ....|.+.++..   ..........-.....+...|.+..|.+. +.  ..       ...|+.++.+
T Consensus       129 ~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~l~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~r~~~d  190 (349)
T 3v64_C          129 K-L-YWTDS---GTSRIEVANLDG---AHRKVLLWQSLEKPRAIALHPMEGTIYWT-DW--GN-------TPRIEASSMD  190 (349)
T ss_dssp             E-E-EEEET---TTTEEEEEETTS---CSCEEEECTTCSCEEEEEEETTTTEEEEE-EC--SS-------SCEEEEEETT
T ss_pred             e-E-EEEcC---CCCeEEEEcCCC---CceEEEEeCCCCCcceEEEecCcCeEEEe-cc--CC-------CCEEEEEeCC
Confidence            2 2 23222   234677777654   11111111111234567788877766542 11  11       1347777777


Q ss_pred             CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871          184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~  260 (434)
                      |.....+....-..-+.++|+|++..+.++ ....+.|..+|+.+.....+   ....-..|++  ++..|.++..++  
T Consensus       191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~--  265 (349)
T 3v64_C          191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHT--  265 (349)
T ss_dssp             SCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTT--
T ss_pred             CCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCC--
Confidence            653222211123345789999988888874 44567999999876543333   2223345555  334555555443  


Q ss_pred             CeEEEEEccCCE
Q 013871          261 GDMAFWDYVDGK  272 (434)
Q Consensus       261 g~i~iwd~~~~~  272 (434)
                      +.|..+|..+++
T Consensus       266 ~~V~~~~~~~G~  277 (349)
T 3v64_C          266 KSINSANKFTGK  277 (349)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CeEEEEEccCCC
Confidence            567766655543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.01  E-value=0.012  Score=56.44  Aligned_cols=233  Identities=9%  Similarity=-0.101  Sum_probs=128.2

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec
Q 013871           61 EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF  140 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~  140 (434)
                      ..+|+....+.|+.+++..... ....-.......++|++.. ..| +|...   ..+.|..+++..   ..........
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~-~~~~~~~~~~~gl~~d~~~-~~l-y~~D~---~~~~I~r~~~~g---~~~~~~~~~~  157 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDV---TLDRILRANLNG---SNVEEVVSTG  157 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCC-EEEECSCSCEEEEEEETTT-TEE-EEEET---TTTEEEEEETTS---CCEEEEECSS
T ss_pred             cceeEeecCccceeeccCCCcE-EEEecCCCccEEEEEecCC-CeE-EEEeC---CCCcEEEEecCC---CCcEEEEeCC
Confidence            4455556667888888765332 1111224567889999863 333 33322   124666666654   2211111111


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      ......+.+.+.+..|.+. ..          +...|+.++..+.....+....-....++++.|.+..+.+.-....+.
T Consensus       158 ~~~p~glavd~~~g~lY~~-d~----------~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~  226 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR  226 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEE-ET----------TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE
T ss_pred             CCCccEEEEEeCCCeEEEE-cC----------CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE
Confidence            1122345555555555432 11          112356666655432222222224568999999887777643322378


Q ss_pred             EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013871          221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM  295 (434)
Q Consensus       221 v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~  295 (434)
                      |..+++.+.....+   .-..-+.|+|+|++..|.++..++  +.|+.+|++..  +.+.......+..++.  ++..|+
T Consensus       227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly  302 (386)
T 3v65_B          227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLY  302 (386)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEE
T ss_pred             EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEE
Confidence            99999886554444   223458899999999888887654  78999998743  2222212224445666  333555


Q ss_pred             EEEcCCceeeCCcEEEEe-ecCceeeee
Q 013871          296 TATTAPRLQIDNGIKIFH-HNGSLFFKK  322 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~-~~g~~~~~~  322 (434)
                      .+...     .+.|..++ .+|+.+...
T Consensus       303 ~td~~-----~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          303 WTDWH-----TKSINSANKFTGKNQEII  325 (386)
T ss_dssp             EEETT-----TTEEEEEETTTCCSCEEE
T ss_pred             EeeCC-----CCeEEEEECCCCcceEEE
Confidence            54442     67788787 677655443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.94  E-value=0.00046  Score=62.47  Aligned_cols=175  Identities=13%  Similarity=0.127  Sum_probs=111.6

Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                      ..+.|+++| .|.+. +..        ++...|..++...+. ...+++........+++  +++++.+. ...++.+.+
T Consensus        24 ~Gl~~~~dg-~Lyvs-tg~--------~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~-t~~~~~v~v   90 (266)
T 2iwa_A           24 QGLVYAEND-TLFES-TGL--------YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQV-VWLKNIGFI   90 (266)
T ss_dssp             EEEEECSTT-EEEEE-ECS--------TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEE-ETTCSEEEE
T ss_pred             ccEEEeCCC-eEEEE-CCC--------CCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEE-EecCCEEEE
Confidence            467888886 44443 221        133457777765432 33344433222234444  46677764 567889999


Q ss_pred             Eeccc-ceeEEeCCc-CeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEE
Q 013871          224 FNKKC-RPILELGSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYF  294 (434)
Q Consensus       224 ~d~~~-~~~~~~~~~-~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l  294 (434)
                      +|... +.+.++..+ + ....+++||+.++++. +  .+.|.++|.++.+.+..+.-.       ....++|. ||+.+
T Consensus        91 iD~~t~~v~~~i~~g~~-~g~glt~Dg~~l~vs~-g--s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           91 YDRRTLSNIKNFTHQMK-DGWGLATDGKILYGSD-G--TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             EETTTTEEEEEEECCSS-SCCEEEECSSSEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EECCCCcEEEEEECCCC-CeEEEEECCCEEEEEC-C--CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            99864 455566332 2 2345677898888775 3  469999999998777666531       24458888 78544


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceeeeeecc---------------cceeeEEEcCCCCCCCCc
Q 013871          295 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD---------------KLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~-~g~~~~~~~~~---------------~~~~~~w~p~~~~~~~~~  343 (434)
                      +....      ++.|.+-|. +|+.+......               .+..++|.|+...+|-..
T Consensus       166 vn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          166 ANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             EEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE
T ss_pred             EecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC
Confidence            44334      788999998 66666665542               458999999988888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.93  E-value=0.00097  Score=61.83  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=67.0

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ..+.++...++|..++   +..++.+..+|..+..+..+  .......+...++|++. +++   .+|.|..+|. +++.
T Consensus       215 ~~~~~~~~~~~g~l~v---~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t---~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYV---TSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIY-FGS---YDGHLYAINP-DGTE  286 (330)
T ss_dssp             CCCSCCEECTTSCEEE---EETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEE-EEC---TTCEEEEECT-TSCE
T ss_pred             cceeceEECCCCeEEE---EcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEE-Eec---CCCCEEEECC-CCcE
Confidence            4577888888886555   44467888888777666554  23334556677777654 454   3468999996 6666


Q ss_pred             EEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          274 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       274 i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      +..+...  .+..+..+++|+.+ .++.      ++.+++....
T Consensus       287 ~~~~~~~~~~~~~~~~d~~g~l~-~gt~------~G~~~~~~~~  323 (330)
T 3hxj_A          287 KWNFETGSWIIATPVIDENGTIY-FGTR------NGKFYALFNL  323 (330)
T ss_dssp             EEEEECSSCCCSCCEECTTCCEE-EECT------TSCEEEEEC-
T ss_pred             EEEEEcCCccccceEEcCCCEEE-EEcC------CCeEEEEecc
Confidence            6555432  34446777888754 4666      7777766543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.90  E-value=0.015  Score=53.94  Aligned_cols=224  Identities=5%  Similarity=-0.107  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~   98 (434)
                      ...|+..|+.+++....+...    .....+.|.+++..|...  .++.|+.++....    ...............+++
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~----~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav   84 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV   84 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred             CCeEEEEECCCcceEehhcCC----CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEE
Confidence            356899998877654433221    223378999876655544  3579999998651    111111111234567788


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++. + +|...   ....|.++++..   ..........-.....+...|.+..|.+. ..  ..       ...|+
T Consensus        85 d~~~~~-l-y~~d~---~~~~I~~~~~~g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~-d~--~~-------~~~I~  146 (316)
T 1ijq_A           85 DWIHSN-I-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW--GT-------PAKIK  146 (316)
T ss_dssp             ETTTTE-E-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC--SS-------SCEEE
T ss_pred             eecCCe-E-EEEEC---CCCEEEEEeCCC---CceEEEEECCCCCcceEEeCCCCCEEEEE-cc--CC-------CCeEE
Confidence            765332 2 22221   235777777653   21111111111233567778777765542 11  11       12467


Q ss_pred             EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---C--CcCeeEEEECCCCCeEEE
Q 013871          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---G--SGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~--~~~~~~i~~SP~g~~l~~  253 (434)
                      .++.+|.....+....-...+.++|+|++..+.++ ....+.|..+|..+.....+   .  ...-..|++.  +..|.+
T Consensus       147 ~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~  223 (316)
T 1ijq_A          147 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFW  223 (316)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEE
T ss_pred             EEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEE
Confidence            77766654332221223456799999998888874 44567999999876443333   1  1223456663  455666


Q ss_pred             EecCCCCCeEEEEEccCCEEEE
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      +..++  +.|..+|..+++.+.
T Consensus       224 ~d~~~--~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          224 TDIIN--EAIFSANRLTGSDVN  243 (316)
T ss_dssp             EETTT--TEEEEEETTTCCCCE
T ss_pred             EECCC--CeEEEEeCCCCcceE
Confidence            65543  678888876664333

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.89  E-value=0.011  Score=61.19  Aligned_cols=58  Identities=14%  Similarity=0.233  Sum_probs=45.5

Q ss_pred             CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      |.|..||+.+++.+..+..+.. ..-.++..|..+++++.      |+.|++||. +|+++.+...
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~------dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA------DGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC------CCcEEEEECCCCccceeeeC
Confidence            7899999999999888776532 22466677888888887      999999997 6888766543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.82  E-value=0.021  Score=52.92  Aligned_cols=238  Identities=9%  Similarity=-0.012  Sum_probs=125.1

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-----------------CCCCCCeeeecC-CCcEE
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-----------------TKTTWPSIRFSS-DEAVA   64 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-----------------~~~~~~~~~~S~-d~~~l   64 (434)
                      .+++++|+|++|.+..     .++.|..||..+++. ..+.....                 .......+++.+ +++++
T Consensus        22 ~~i~~d~~g~~l~v~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSV-----QDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             CCEECCTTCSSEEEEC-----TTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             eEEEEcCCCCEEEEEc-----CCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            4688999999666544     567899998776653 33332100                 001223678887 77766


Q ss_pred             EEecCCeEEEEeCCCCCCceeee----eecCCeeEEEEeC-CCCCeEEEEecCC-------------CCCCceEEEEEcC
Q 013871           65 CRMATNEIQFFDTTDFPKGILYR----LRVPGVAAFEVSK-APGSHVAVFVPES-------------KGSPASVQIYACG  126 (434)
Q Consensus        65 a~~~~~~i~v~~~~~~~~~~~~~----~~~~~v~~~~~sp-~~~~~ia~~~~~~-------------~~~~~~v~i~~~~  126 (434)
                      ++...+.|..++...........    ........+.+.| ++.-+++-  ...             ....+.|..++..
T Consensus        96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d--~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTD--VSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEE--SCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEEC--CcccccccccceehcccCCCceEEEEeCC
Confidence            66555668888865421111111    1123467788998 64322221  110             0123566666654


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc----ceeeeecCCCCCeEEEE
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT----HEGLVPLRKEGPVHDVQ  202 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~----~~~~v~l~~~~~i~~v~  202 (434)
                      .   ++....... -.....+.|+++|+.|++.- +          +...|+.++..+.    ......+  .+ ...++
T Consensus       174 ~---~~~~~~~~~-~~~p~gia~~~dg~~lyv~d-~----------~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~  235 (322)
T 2fp8_A          174 T---KETTLLLKE-LHVPGGAEVSADSSFVLVAE-F----------LSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIK  235 (322)
T ss_dssp             T---TEEEEEEEE-ESCCCEEEECTTSSEEEEEE-G----------GGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEE
T ss_pred             C---CEEEEeccC-CccCcceEECCCCCEEEEEe-C----------CCCeEEEEECCCCcCCccceEEeC--CC-CCCeE
Confidence            3   221111111 12334689999999776532 1          1113555554431    1111122  34 67899


Q ss_pred             ECcCCCEEEEEEc--------cCCCeEEEEecccceeEEeC--C----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          203 WSYSGSEFAVVYG--------FMPASATIFNKKCRPILELG--S----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       203 wspdg~~~av~~g--------~~~~~v~l~d~~~~~~~~~~--~----~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      +.++|+.++...+        ...+.|..||..++.+..+.  .    ..+..+.+ .+|+ |.+++..  .+.|.++++
T Consensus       236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~-L~v~~~~--~~~i~~~~~  311 (322)
T 2fp8_A          236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGL-LYIGTLF--HGSVGILVY  311 (322)
T ss_dssp             ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTE-EEEECSS--CSEEEEEEC
T ss_pred             ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCE-EEEeecC--CCceEEEec
Confidence            9999985553322        11357888888777665552  1    23455655 3444 4444432  257888876


Q ss_pred             cC
Q 013871          269 VD  270 (434)
Q Consensus       269 ~~  270 (434)
                      ..
T Consensus       312 ~~  313 (322)
T 2fp8_A          312 DK  313 (322)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.76  E-value=0.031  Score=57.92  Aligned_cols=77  Identities=14%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             CeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-Cc--eEEEECCCCCE
Q 013871          219 ASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~--~~~~wspdg~~  293 (434)
                      +.+..||+++ +.+.++ ...+...-.++..|.++++++   .+|.|+.||.++++.+..++.+ .+  .-+.|+.||+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS---ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC---CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEE
Confidence            5688899964 444444 233344446667788888876   6789999999999999888754 22  23888999986


Q ss_pred             EEEEE
Q 013871          294 FMTAT  298 (434)
Q Consensus       294 l~tas  298 (434)
                      ++...
T Consensus       532 yv~~~  536 (689)
T 1yiq_A          532 YVTFM  536 (689)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.75  E-value=0.0017  Score=58.24  Aligned_cols=157  Identities=14%  Similarity=0.111  Sum_probs=98.3

Q ss_pred             cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCe
Q 013871          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  250 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~  250 (434)
                      |...|..++...+. ...++++  .........++++.+.++ ...++.+.+||.+ .+.+.++.... ....+++||+.
T Consensus        63 g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g~~ly~l-tw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~  138 (262)
T 3nol_A           63 GRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWKDKIVGL-TWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQY  138 (262)
T ss_dssp             TEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSC
T ss_pred             CCceEEEEECCCCcEEEEEecC--CccceeEEEEeCCEEEEE-EeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCE
Confidence            44456677665432 2334443  333333344567777775 4567899999986 45555653221 22344467887


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |+.+..   .+.|.++|..+.+.+..+.-.       ....++|. +|+.++..-.      ++.|.+-|. +|+.+...
T Consensus       139 L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~I  208 (262)
T 3nol_A          139 LIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGII  208 (262)
T ss_dssp             EEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEE
T ss_pred             EEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEE
Confidence            777652   358999999999877765431       22347887 7864443334      777888877 56655544


Q ss_pred             ec--------------ccceeeEEEcCCCCCCCCc
Q 013871          323 MF--------------DKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 ~~--------------~~~~~~~w~p~~~~~~~~~  343 (434)
                      ..              +.+..++|.|+...+|-..
T Consensus       209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            33              2467899999988888765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.74  E-value=0.031  Score=52.67  Aligned_cols=237  Identities=9%  Similarity=-0.074  Sum_probs=131.1

Q ss_pred             eeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc
Q 013871           54 SIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP  133 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~  133 (434)
                      |....+ ..+|.....+.|+..++..... ....-.......++|++.. ..| +|....   .+.|..+++..   ...
T Consensus        38 C~~~~~-~~~ll~~~~~~I~~i~~~g~~~-~~~~~~~~~~~~l~~d~~~-~~l-y~~D~~---~~~I~r~~~~g---~~~  107 (349)
T 3v64_C           38 CKALGP-EPVLLFANRIDIRQVLPHRSEY-TLLLNNLENAIALDFHHRR-ELV-FWSDVT---LDRILRANLNG---SNV  107 (349)
T ss_dssp             EEESSS-CCEEEEECBSCEEEECTTSCCE-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEETTS---CSC
T ss_pred             cccccc-CceeEeecccceEEEeCCCCee-EEeecCCCceEEEEEeccc-cEE-EEEecc---CCceEEEecCC---CCc
Confidence            544445 4456656667788888765321 1111124457888999863 333 333221   24666666654   221


Q ss_pred             eeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEE
Q 013871          134 LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       134 i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~  213 (434)
                      .............+...+.+..|.+. ..          +...|+.++..+.....+....-....++++.|.+..+.+.
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWT-DS----------GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEE-cC----------CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEe
Confidence            11111111122345566555555442 11          11246666666653222222223456899999977777664


Q ss_pred             EccCC-CeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEE
Q 013871          214 YGFMP-ASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEW  287 (434)
Q Consensus       214 ~g~~~-~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~w  287 (434)
                       .... +.|..+++.+.....+.   -..-+.|+|+|++..|.++..++  +.|+.+|.+..  +.+.......+..++.
T Consensus       177 -d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~dG~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          177 -DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             -ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred             -ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCC--CEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence             4444 78999998876555442   23458899999999888887654  78999998743  2222222224445666


Q ss_pred             CCCCCEEEEEEcCCceeeCCcEEEEe-ecCceeee
Q 013871          288 SPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK  321 (434)
Q Consensus       288 spdg~~l~tas~~prl~~D~~i~iw~-~~g~~~~~  321 (434)
                        ++..|..+...     .+.|...+ .+|+.+..
T Consensus       254 --~~~~ly~td~~-----~~~V~~~~~~~G~~~~~  281 (349)
T 3v64_C          254 --FEDSLYWTDWH-----TKSINSANKFTGKNQEI  281 (349)
T ss_dssp             --ETTEEEEEETT-----TTEEEEEETTTCCSCEE
T ss_pred             --ECCEEEEecCC-----CCeEEEEEccCCCccEE
Confidence              33455555442     66777777 67765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.74  E-value=0.011  Score=54.61  Aligned_cols=208  Identities=10%  Similarity=0.031  Sum_probs=113.1

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPG  103 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  103 (434)
                      .++.|..+|.. |+.+..+....   ..+.++...+++.+++...++.|..|+.. .............+..+...+++ 
T Consensus       115 ~~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-  188 (330)
T 3hxj_A          115 MDGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-  188 (330)
T ss_dssp             TTSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-
T ss_pred             cCCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-
Confidence            46789999987 87776665432   34446677778887776667899999987 33212222223334555555442 


Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                      ..   |+..     +.+..++ ++   +..+............+...++|.. .+.+ .           ...|+.++..
T Consensus       189 ~l---~v~t-----~~l~~~d-~~---g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t-~-----------~~gl~~~~~~  243 (330)
T 3hxj_A          189 TI---YFGS-----DKVYAIN-PD---GTEKWNFYAGYWTVTRPAISEDGTI-YVTS-L-----------DGHLYAINPD  243 (330)
T ss_dssp             CE---EEES-----SSEEEEC-TT---SCEEEEECCSSCCCSCCEECTTSCE-EEEE-T-----------TTEEEEECTT
T ss_pred             EE---EEEe-----CEEEEEC-CC---CcEEEEEccCCcceeceEECCCCeE-EEEc-C-----------CCeEEEECCC
Confidence            22   2111     4556666 33   3333333322233445555666542 2221 1           1135555433


Q ss_pred             CcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCC
Q 013871          184 GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG  261 (434)
Q Consensus       184 ~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g  261 (434)
                      +...-..... ...+..+...+++..++   +..++.+..||.+++.+..+  ....+.++...++|++.+ ++   .+|
T Consensus       244 g~~~~~~~~~-~~~~~~~~~~~~g~l~v---~t~~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt---~~G  315 (330)
T 3hxj_A          244 GTEKWRFKTG-KRIESSPVIGNTDTIYF---GSYDGHLYAINPDGTEKWNFETGSWIIATPVIDENGTIYF-GT---RNG  315 (330)
T ss_dssp             SCEEEEEECS-SCCCSCCEECTTSCEEE---ECTTCEEEEECTTSCEEEEEECSSCCCSCCEECTTCCEEE-EC---TTS
T ss_pred             CCEeEEeeCC-CCccccceEcCCCeEEE---ecCCCCEEEECCCCcEEEEEEcCCccccceEEcCCCEEEE-Ec---CCC
Confidence            3322222221 22234456666665444   55567899999866655544  455667788888888655 54   557


Q ss_pred             eEEEEEccC
Q 013871          262 DMAFWDYVD  270 (434)
Q Consensus       262 ~i~iwd~~~  270 (434)
                      .+.+...+.
T Consensus       316 ~~~~~~~~~  324 (330)
T 3hxj_A          316 KFYALFNLE  324 (330)
T ss_dssp             CEEEEEC--
T ss_pred             eEEEEeccc
Confidence            888876543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.72  E-value=0.0093  Score=55.33  Aligned_cols=241  Identities=9%  Similarity=0.033  Sum_probs=122.1

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeee--------------------ecCCeeEEEEeCCCCCeEEEEecC
Q 013871           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRL--------------------RVPGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~--------------------~~~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      .++|.++++++... .++.|..|+...... .....                    .......+++.++.+.++.   .+
T Consensus        23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v---~d   98 (322)
T 2fp8_A           23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI---VD   98 (322)
T ss_dssp             CEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE---EE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE---EE
Confidence            68999999844444 567999998765321 11111                    0124677888873232221   11


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeee--ecccceeEEEECC-CCCeEEEEEEecccccCce-------eecceeEEEEee
Q 013871          113 SKGSPASVQIYACGKDLQSQPLARRS--FFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQS-------YYGESKLNYLTT  182 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~--~~~~~~~~~~ws~-~G~~l~~~~~~~~d~~~~~-------~~g~~~l~~l~~  182 (434)
                      ..   ..+..++..... ...+....  ........+...+ +|. |.+ ++.........       ......|+.++.
T Consensus        99 ~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v-~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~  172 (322)
T 2fp8_A           99 CY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGI-VYF-TDVSTLYDDRGVQQIMDTSDKTGRLIKYDP  172 (322)
T ss_dssp             TT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCC-EEE-EESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred             CC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCE-EEE-ECCcccccccccceehcccCCCceEEEEeC
Confidence            11   235555543210 01111100  0001234678888 886 333 22210000000       001234666665


Q ss_pred             CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------eeEEeCCcCeeEEEECCCCCeEEEEec
Q 013871          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~~~~~~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      .+.....+ .......+.++|+|+|+.+.+. ....+.|.+|++.+.      ....+ .+ -..+++.++|++.+....
T Consensus       173 ~~~~~~~~-~~~~~~p~gia~~~dg~~lyv~-d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          173 STKETTLL-LKELHVPGGAEVSADSSFVLVA-EFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTTEEEEE-EEEESCCCEEEECTTSSEEEEE-EGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEe-ccCCccCcceEECCCCCEEEEE-eCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEEecC
Confidence            43322111 1111234679999999977764 444579999998642      11122 23 567999999986555432


Q ss_pred             C-------CCCCeEEEEEccCCEEEEEeeCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          257 G-------NLPGDMAFWDYVDGKQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       257 ~-------~~~g~i~iwd~~~~~~i~~~~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .       ...+.|..+|.+ ++.+..+..+      .++.+.+ .+|+.+++...      .+.|.++++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~------~~~i~~~~~~~  313 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF------HGSVGILVYDK  313 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS------CSEEEEEEC--
T ss_pred             cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC------CCceEEEeccc
Confidence            0       012578888874 6666555432      3444555 45655554444      77888887654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.71  E-value=0.025  Score=50.72  Aligned_cols=198  Identities=17%  Similarity=0.160  Sum_probs=115.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      +..|+|+|++..|.+...    .++.|...|+. |+.++++.....  ...-.+++.+++.++++. .++.|.++++...
T Consensus        29 lSGla~~~~~~~L~aV~d----~~~~I~~ld~~-g~v~~~i~l~g~--~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTIN----KPAAIVEMTTN-GDLIRTIPLDFV--KDLETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             EEEEEEETTTTEEEEEEE----TTEEEEEEETT-CCEEEEEECSSC--SSEEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             cceeEEeCCCCEEEEEEC----CCCeEEEEeCC-CCEEEEEecCCC--CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            467999999887776552    35778888987 888888754321  233367888999887765 4579999988664


Q ss_pred             CCc-eeeeee--------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeee-------eecccce
Q 013871           81 PKG-ILYRLR--------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARR-------SFFRCST  144 (434)
Q Consensus        81 ~~~-~~~~~~--------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~-------~~~~~~~  144 (434)
                      ... ......        -.+...++|+|.++..+.+  .+  ..+..|..|+  .......+...       ..+..+.
T Consensus       102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va--~E--~~p~~i~~~~--g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A          102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF--KE--KNPIEVYKVN--GLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE--EE--SSSEEEEEEE--STTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE--EC--cCCceEEEEc--ccccCCceeeecchhhccccccCCc
Confidence            421 111121        1245789999984433332  22  2233444443  11001111111       1223355


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCC--------CCeEEEEECcCCCEEEEEEcc
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--------GPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~--------~~i~~v~wspdg~~~av~~g~  216 (434)
                      ..+.++|.-..++++.+    .+.       .|..++..|.......|...        ..-..|++.|+|+.+++   +
T Consensus       176 S~l~~dp~tg~lliLS~----~s~-------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---s  241 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSH----ESR-------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---S  241 (255)
T ss_dssp             CEEEEETTTTEEEEEET----TTT-------EEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---E
T ss_pred             eeEEEcCCCCeEEEEEC----CCC-------eEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---c
Confidence            67888888777777632    222       25555655554445555421        24578999999985553   4


Q ss_pred             CCCeEEEEec
Q 013871          217 MPASATIFNK  226 (434)
Q Consensus       217 ~~~~v~l~d~  226 (434)
                      +++.++.|..
T Consensus       242 E~n~~y~f~~  251 (255)
T 3qqz_A          242 EPNRFYRFTP  251 (255)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCceEEEEEe
Confidence            5667777643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.68  E-value=0.033  Score=51.29  Aligned_cols=259  Identities=8%  Similarity=-0.019  Sum_probs=145.0

Q ss_pred             ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC---------------Ce
Q 013871            7 CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT---------------NE   71 (434)
Q Consensus         7 fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~---------------~~   71 (434)
                      |+++|.+|......   .+..|...+. +|.....+....       +--++++|.+++....               ..
T Consensus        21 ~~~~g~~iy~~n~~---d~~~ly~~~~-dg~~~~~l~~~~-------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           21 FCESDGEVFFSNTN---DNGRLYAMNI-DGSNIHKLSNDT-------AMYINADKNYVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             EEEETTEEEEEEGG---GTTEEEEEET-TSCSCEEEEEEE-------EEEEEECSSEEEEEEECC------CCSSCCSEE
T ss_pred             EEEeCCEEEEEeCC---CCceEEEEcC-CCCCCEEccCCc-------eeeEEEcCCEEEEEECCCCcccccceeccCCCe
Confidence            67889988876532   2355666664 343344443321       3356889999988742               24


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECC
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR  151 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~  151 (434)
                      |+..++...+.   ..+...  ....|+|+ +..|.+ ...+......|...++..    .....++-...    ..+++
T Consensus        90 Iy~i~~dg~~~---~~l~~~--~~~~~s~~-g~~Iy~-~~~~~~~~~~Iy~~~~dG----s~~~~lt~~~~----~~~~~  154 (302)
T 3s25_A           90 LCRIKRNGHGS---TVLDPD--PCIYASLI-GNYIYY-LHYDTQTATSLYRIRIDG----EEKKKIKNHYL----FTCNT  154 (302)
T ss_dssp             EEEEETTSCCC---EEEECS--CEEEEEEE-TTEEEE-EEESSSSCEEEEEEETTS----CCCEEEESSCC----CCSEE
T ss_pred             EEEEeCCCCcc---eEeecC--CccEEEEe-CCEEEE-EeecCCCCceEEEEECCC----CCeEEEeCCCc----eEeeE
Confidence            56666554321   223222  22366776 445543 321112223455555543    22222322222    34577


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI  231 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~  231 (434)
                      +|+.|...    .+       +...|+.+++.+....++ +  ++.... .++|++..++.+.......|..-++.+...
T Consensus       155 ~g~~iy~t----~~-------g~~~Iy~~~l~g~~~~~l-~--~~~~~~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~  219 (302)
T 3s25_A          155 SDRYFYYN----NP-------KNGQLYRYDTASQSEALF-Y--DCNCYK-PVVLDDTNVYYMDVNRDNAIVHVNINNPNP  219 (302)
T ss_dssp             ETTEEEEE----CT-------TTCCEEEEETTTTEEEEE-E--CSCEEE-EEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred             ECCEEEEE----eC-------CCceEEEEECCCCCEEEE-e--CCCccc-eeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence            88887653    11       334588898888755544 2  344443 456999999876554446888888887766


Q ss_pred             EEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          232 LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       232 ~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      ..+....+  ..|+|+|++|..+... ..+.|+.-+++.......... .  ...+++.+.+|......     .+.|..
T Consensus       220 ~~Lt~~~~--~~~~~~g~~Iy~~~~~-~~~~i~~~~~DG~~r~~l~~~-~--~~~i~i~~d~Iy~td~~-----~~~i~~  288 (302)
T 3s25_A          220 VVLTEANI--EHYNVYGSLIFYQRGG-DNPALCVVKNDGTGFKELAKG-E--FCNINVTSQYVYFTDFV-----SNKEYC  288 (302)
T ss_dssp             EECSCSCE--EEEEEETTEEEEEECS-SSCEEEEEETTSCCCEEEEES-C--EEEEEECSSEEEEEETT-----TCCEEE
T ss_pred             EEEeCCCc--ceEEECCCEEEEEECC-CCcEEEEEECCCCccEEeeCC-c--cceEEEeCCEEEEEECC-----CCeEEE
Confidence            66654444  4589999999876432 226788888874422222222 1  23566777888776642     334444


Q ss_pred             EeecCc
Q 013871          312 FHHNGS  317 (434)
Q Consensus       312 w~~~g~  317 (434)
                      -+++|.
T Consensus       289 ~~~dGs  294 (302)
T 3s25_A          289 TSTQNP  294 (302)
T ss_dssp             EESSSC
T ss_pred             EECCCC
Confidence            455554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.65  E-value=0.026  Score=53.31  Aligned_cols=95  Identities=9%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCC
Q 013871          215 GFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD  290 (434)
Q Consensus       215 g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspd  290 (434)
                      +..++.+..+|.+ ++.+..........+..  ++..|.+++   .+|.|..+|..+++.+......   .......  .
T Consensus       245 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~  317 (376)
T 3q7m_A          245 LAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--Y  317 (376)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--E
T ss_pred             EecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--E
Confidence            4456789999985 45555554444444444  356666666   4568999999999888776521   1222222  3


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      +..|++++.      ++.+.++|. +|+++...
T Consensus       318 ~~~l~v~~~------~g~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          318 NGNLVVGDS------EGYLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             TTEEEEECT------TSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence            567788877      889999996 66665443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.63  E-value=0.018  Score=51.57  Aligned_cols=183  Identities=9%  Similarity=0.152  Sum_probs=99.0

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF   80 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~   80 (434)
                      ..|.|+ +|....+.+.+   ....|+++|+.+|+.+.++....   ... ..-.++++..|..+  .++.+.+||..++
T Consensus        46 qGL~~~-~~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~---~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~  117 (262)
T 3nol_A           46 EGFFYR-NGYFYESTGLN---GRSSIRKVDIESGKTLQQIELGK---RYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEE-TTEEEEEEEET---TEEEEEEECTTTCCEEEEEECCT---TCC-EEEEEEETTEEEEEESSSSEEEEEETTTC
T ss_pred             ceEEEE-CCEEEEECCCC---CCceEEEEECCCCcEEEEEecCC---ccc-eeEEEEeCCEEEEEEeeCCEEEEEECccC
Confidence            568898 67655555521   12489999999999998876542   222 22233344444433  4789999999887


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----cceeEEEECCCCCe
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----CSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----~~~~~~~ws~~G~~  155 (434)
                      ...  .++..++ ....++++++..+   +.+  + .+.|.++|..+   .+.+.......     .....+.|. +|. 
T Consensus       118 ~~~--~ti~~~~-eG~glt~dg~~L~---~Sd--G-s~~i~~iDp~T---~~v~~~I~V~~~g~~~~~lNELe~~-~G~-  183 (262)
T 3nol_A          118 RQV--RSFNYDG-EGWGLTHNDQYLI---MSD--G-TPVLRFLDPES---LTPVRTITVTAHGEELPELNELEWV-DGE-  183 (262)
T ss_dssp             CEE--EEEECSS-CCCCEEECSSCEE---ECC--S-SSEEEEECTTT---CSEEEEEECEETTEECCCEEEEEEE-TTE-
T ss_pred             cEE--EEEECCC-CceEEecCCCEEE---EEC--C-CCeEEEEcCCC---CeEEEEEEeccCCccccccceeEEE-CCE-
Confidence            643  3344332 2234445533322   222  2 46788888776   45555544321     111235665 553 


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC-----------CCCCeEEEEECcCCCEEEEEEccCC
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR-----------KEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~-----------~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      |.+-  .         +....+..++...+. ...+.+.           ...-.+.++|+|+++.|.|..-..|
T Consensus       184 lyan--~---------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp  247 (262)
T 3nol_A          184 IFAN--V---------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP  247 (262)
T ss_dssp             EEEE--E---------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred             EEEE--E---------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence            3321  1         112235555543322 1222221           1235688999999999988543343

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.62  E-value=0.04  Score=50.64  Aligned_cols=232  Identities=8%  Similarity=-0.042  Sum_probs=118.5

Q ss_pred             CCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeec-CCeeEEEEeCCCCCeEEEEecC
Q 013871           35 TGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRV-PGVAAFEVSKAPGSHVAVFVPE  112 (434)
Q Consensus        35 ~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~ia~~~~~  112 (434)
                      ..+.+.+|...    .....++|+++++++++- .++.|+.|+....   ....... .....++++|++..+++-+   
T Consensus        21 ~~~~~~~~p~~----~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~---~~~~~~~~~~p~gia~~~dG~l~vad~---   90 (306)
T 2p4o_A           21 PAKIITSFPVN----TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGDLVATGW---   90 (306)
T ss_dssp             CEEEEEEECTT----CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSCEEEEEE---
T ss_pred             CceEeEeCCCC----CCcceEEECCCCCEEEEeCCCCeEEEECCCCc---eEEEEeCCCCceeEEEcCCCcEEEEec---
Confidence            34555666432    122278999999877665 4679999987642   1122222 3467888998854222221   


Q ss_pred             CCCCCceEEEEEcCCCCCCCceeeeeeccc-ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-
Q 013871          113 SKGSPASVQIYACGKDLQSQPLARRSFFRC-STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-  190 (434)
Q Consensus       113 ~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-  190 (434)
                       ......|..++.++   ++.......... ....+...+ +..+++ +..          +...||.++..+...... 
T Consensus        91 -~~~~~~v~~~d~~~---g~~~~~~~~~~~~~~~g~~~~~-~~~~~v-~d~----------~~g~i~~~d~~~~~~~v~~  154 (306)
T 2p4o_A           91 -NADSIPVVSLVKSD---GTVETLLTLPDAIFLNGITPLS-DTQYLT-ADS----------YRGAIWLIDVVQPSGSIWL  154 (306)
T ss_dssp             -CTTSCEEEEEECTT---SCEEEEEECTTCSCEEEEEESS-SSEEEE-EET----------TTTEEEEEETTTTEEEEEE
T ss_pred             -cCCcceEEEEcCCC---CeEEEEEeCCCccccCcccccC-CCcEEE-EEC----------CCCeEEEEeCCCCcEeEEE
Confidence             11112344444443   222111111000 001112122 233332 211          111356665443210110 


Q ss_pred             ---------ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ce---eEEe-CCcCeeEEEECCCCCeEEEEec
Q 013871          191 ---------PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RP---ILEL-GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       191 ---------~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~---~~~~-~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                               ....-...+.+  +|+++.+.+. ....+.|..||... ..   ...+ ....-..+++.++|++++ +..
T Consensus       155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~-d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~v-a~~  230 (306)
T 2p4o_A          155 EHPMLARSNSESVFPAANGL--KRFGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYG-ATH  230 (306)
T ss_dssp             ECGGGSCSSTTCCSCSEEEE--EEETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEE-ECB
T ss_pred             ECCccccccccCCCCcCCCc--CcCCCEEEEE-eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEE-EeC
Confidence                     00111233455  8999888764 55567999999863 11   1111 112345689999998654 443


Q ss_pred             CCCCCeEEEEEccCCEE--EEEeeC--CCceEEEEC---CCCCEEEEEEc
Q 013871          257 GNLPGDMAFWDYVDGKQ--LGTTRA--ECSVTSEWS---PDGRYFMTATT  299 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~--i~~~~~--~~~~~~~ws---pdg~~l~tas~  299 (434)
                      +  .+.|.++|.. ++.  +..+..  ..++.++|.   ||+..|+.++.
T Consensus       231 ~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          231 I--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             T--TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             C--CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            3  3689999976 544  323332  367789999   89888887776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.0009  Score=69.57  Aligned_cols=228  Identities=5%  Similarity=-0.112  Sum_probs=117.5

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCC----CCceeeeeecCCeeEEEE
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDF----PKGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~----~~~~~~~~~~~~v~~~~~   98 (434)
                      ...|++.++.+++....+...    .....++|.+++..|...  ..+.|+.+++...    .........+.....+++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~----~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCC----TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeeccC----cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence            356777787766543322221    223378999877766655  3469999988641    111111111223445666


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++.+  +|. +  ...+.|.++++..   ................+++.|.+..|++. .  ...       ...|+
T Consensus       461 D~~~g~L--Y~t-D--~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~g~ly~t-d--~~~-------~~~I~  522 (699)
T 1n7d_A          461 DWIHSNI--YWT-D--SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVHGFMYWT-D--WGT-------PAKIK  522 (699)
T ss_dssp             CCSSSBC--EEC-C--TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSSSCCEEC-C--CSS-------SCCEE
T ss_pred             EeeCCcE--EEE-e--ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCCCcEEEc-c--cCC-------CCeEE
Confidence            6542322  222 1  2234677777643   11111111111223456777766655432 1  100       12356


Q ss_pred             EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCC-----cCeeEEEECCCCCeEEE
Q 013871          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS-----GPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~-----~~~~~i~~SP~g~~l~~  253 (434)
                      .++..+.....+....-..-+.|+|+|++..|.++ ....+.|..+|+.+.....+..     ..-..|++  ++..|++
T Consensus       523 ~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glav--d~~~lyw  599 (699)
T 1n7d_A          523 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  599 (699)
T ss_dssp             BCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEE--ETTEEEE
T ss_pred             EEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEE--ECCEEEE
Confidence            66655543222211112334689999998877764 4556799999987654443321     11223444  3456666


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      +..++  +.|..+|..+++.+..+..
T Consensus       600 td~~~--~~V~~~d~~~G~~~~~i~~  623 (699)
T 1n7d_A          600 TDIIN--EAIFSANRLTGSDVNLLAE  623 (699)
T ss_dssp             ECSTT--TCEEEEETTTEEEEECCCT
T ss_pred             EeCCC--CeEEEEEccCCCceEEeec
Confidence            66543  6899999888877766643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.60  E-value=0.0057  Score=59.61  Aligned_cols=133  Identities=11%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC----CeEEEEeccccee--EEe-CCcCeeEEEECCCC
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP----ASATIFNKKCRPI--LEL-GSGPYNTVRWNPKG  248 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~----~~v~l~d~~~~~~--~~~-~~~~~~~i~~SP~g  248 (434)
                      .|+.++..+.....+ .........++|+++|+.+.+. ....    ..+.+++..+...  ..+ .....+.++++|++
T Consensus       160 ~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyva-d~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~  237 (430)
T 3tc9_A          160 PTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIIT-NDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPIN  237 (430)
T ss_dssp             EEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEE-ECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTT
T ss_pred             cEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEE-eCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCC
Confidence            466666655432222 2234557899999999977664 3311    1345555443221  222 12345778999944


Q ss_pred             CeEEEEecCCCCCeEEEEEccCCEEEEEee--C-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          249 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~--~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ..|.++..++  +.|..+|..++.......  . .....++|+|+|++|+.+...     .+.|..+++++.
T Consensus       238 g~lyv~d~~~--~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-----~~~I~~~~~d~~  302 (430)
T 3tc9_A          238 GELYFNSWNA--GQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-----QHYILRSDYDWK  302 (430)
T ss_dssp             CCEEEEETTT--TEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred             CEEEEEECCC--CEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-----CCEEEEEeCCcc
Confidence            4455555443  799999998776422222  2 246679999999977777653     788999998763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.59  E-value=0.00012  Score=69.92  Aligned_cols=62  Identities=6%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013871           10 VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus        10 ~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      ++..|++.+     .|+.|..||..+|+.+.++.. .   ... +..+..++..++.+ .++.|..||..+..
T Consensus         8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~-~---~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~   70 (369)
T 2hz6_A            8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE-D---PVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNE   70 (369)
T ss_dssp             CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC-C---CSC-CCC-----CCEEECTTTCCEEEC-----C
T ss_pred             eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC-C---Cce-ecceEcCCCEEEEeCCCCEEEEEECCCCc
Confidence            577888877     789999999999999988765 2   222 34456677666664 67899999986644

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.57  E-value=0.063  Score=52.17  Aligned_cols=139  Identities=9%  Similarity=0.011  Sum_probs=69.7

Q ss_pred             ceEEecCC---CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCC-----eEEE
Q 013871            3 LLLTCLRV---GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATN-----EIQF   74 (434)
Q Consensus         3 ~~l~fSP~---g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~-----~i~v   74 (434)
                      ..|+|+|+   |+..++-.     . +.|+.+|..+++... +....   .....++|+++|+++++...+     .+..
T Consensus       142 ~gvavd~~s~~g~Lyv~D~-----~-~~I~~id~~~g~v~~-~~~~~---~~P~giavd~dG~lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          142 WRMMFDPNSNYDDLYWVGQ-----R-DAFRHVDFVNQYVDI-KTTNI---GQCADVNFTLNGDMVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CEEEECTTTTTCEEEEECB-----T-SCEEEEETTTTEEEE-ECCCC---SCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred             ceEEEccccCCCEEEEEeC-----C-CCEEEEECCCCEEEE-eecCC---CCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence            47899995   55444422     1 789999988876543 33211   223378999999955554321     2333


Q ss_pred             EeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEEEECCC
Q 013871           75 FDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRG  152 (434)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~~ws~~  152 (434)
                      ++...........-.......++++|..+.+   |+.+.  ..+.|..++..+   +.........  ......+.|+|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~l---yv~d~--~~~~V~~~d~~~---g~~~~~~~~~~~~~~~~~ia~dpd  283 (433)
T 4hw6_A          212 FTRASGFTERLSLCNARGAKTCAVHPQNGKI---YYTRY--HHAMISSYDPAT---GTLTEEEVMMDTKGSNFHIVWHPT  283 (433)
T ss_dssp             ECGGGTTCCEEEEEECSSBCCCEECTTTCCE---EECBT--TCSEEEEECTTT---CCEEEEEEECSCCSSCEEEEECTT
T ss_pred             EECCCCeeccccccccCCCCEEEEeCCCCeE---EEEEC--CCCEEEEEECCC---CeEEEEEeccCCCCCcccEEEeCC
Confidence            3332211100111123445667888842332   22221  224566666543   2221111111  111235999999


Q ss_pred             CCeEEEE
Q 013871          153 STGLLAV  159 (434)
Q Consensus       153 G~~l~~~  159 (434)
                      |+.|.+.
T Consensus       284 G~~LYva  290 (433)
T 4hw6_A          284 GDWAYII  290 (433)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9976653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.55  E-value=0.047  Score=50.65  Aligned_cols=223  Identities=7%  Similarity=-0.049  Sum_probs=118.1

Q ss_pred             CCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC-ceeeeeecCCeeEEEEe
Q 013871           25 EKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK-GILYRLRVPGVAAFEVS   99 (434)
Q Consensus        25 d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~-~~~~~~~~~~v~~~~~s   99 (434)
                      ...|+..++....  ....+....   ..+ .+.|.+.+..|...  .++.|+.++...... .......+.....+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~---~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLE---DAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEE---EEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEecCCC---ccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence            4678899987653  111111111   233 78999866555444  457999999865421 11222223456677887


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++. + +|...   ....|.++++..   .............-..+...|.+..|.+. ..  ..       ...|+.
T Consensus        88 ~~~g~-l-y~~d~---~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~g~ly~t-d~--~~-------~~~I~r  149 (318)
T 3sov_A           88 WLGEK-L-YWTDS---ETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSSGFMYWT-DW--GE-------VPKIER  149 (318)
T ss_dssp             TTTTE-E-EEEET---TTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGGTEEEEE-EC--SS-------SCEEEE
T ss_pred             cCCCe-E-EEEEC---CCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCCCEEEEE-ec--CC-------CCEEEE
Confidence            65332 2 23221   235777777654   11111111111223456666665555432 11  00       124677


Q ss_pred             EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEec
Q 013871          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      ++.+|.....+....-..-+.++|+|++..+.++ ....+.|..+|..+.....+.   ...-..+++.  +..+..+..
T Consensus       150 ~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~  226 (318)
T 3sov_A          150 AGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDW  226 (318)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEET
T ss_pred             EEcCCCCeEEEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEec
Confidence            7776653222211222345789999988888874 455679999998764443331   2223445553  445555554


Q ss_pred             CCCCCeEEEEEccCCEEE
Q 013871          257 GNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~~i  274 (434)
                      ++  +.|..+|..+++.+
T Consensus       227 ~~--~~V~~~~~~~G~~~  242 (318)
T 3sov_A          227 ST--HSILACNKYTGEGL  242 (318)
T ss_dssp             TT--TEEEEEETTTCCSC
T ss_pred             CC--CeEEEEECCCCCce
Confidence            43  67888887666443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.55  E-value=0.0045  Score=57.18  Aligned_cols=177  Identities=11%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             EEECCCCCeEEEEEEecccccCcee--ecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEE--ccCCCeEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSY--YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY--GFMPASAT  222 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~--~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~--g~~~~~v~  222 (434)
                      -.++++|.+|.++...+.......+  .....|+.+++.+.....+.   ..+.  ..|+++++.++.+.  ......|.
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~---~~~~--~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD---PDPC--IYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE---CSCE--EEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee---cCCc--cEEEEeCCEEEEEeecCCCCceEE
Confidence            4568999999887543221111111  12346889988887533332   2232  37888999999754  12344677


Q ss_pred             EEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCc
Q 013871          223 IFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPR  302 (434)
Q Consensus       223 l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~pr  302 (434)
                      ..++.+.....+.....  ..|+|+|+.|...+.+  ...|+..++..+.....+.+..  ...++|+|.+|+.....  
T Consensus       133 ~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g--~~~Iy~~~l~g~~~~~l~~~~~--~~~~~P~g~~iy~t~~~--  204 (302)
T 3s25_A          133 RIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPK--NGQLYRYDTASQSEALFYDCNC--YKPVVLDDTNVYYMDVN--  204 (302)
T ss_dssp             EEETTSCCCEEEESSCC--CCSEEETTEEEEECTT--TCCEEEEETTTTEEEEEECSCE--EEEEEEETTEEEEEEGG--
T ss_pred             EEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCC--CceEEEEECCCCCEEEEeCCCc--cceeeecCCEEEEEEcC--
Confidence            77777655555533333  5678999999887653  3689999988775444344322  23456999999987651  


Q ss_pred             eeeCC-cEEEEeecCceeeeeecccceeeEEEcCCCCCCC
Q 013871          303 LQIDN-GIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       303 l~~D~-~i~iw~~~g~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         ++ .|..-+++|..........+  ..|.|.+..|+-
T Consensus       205 ---~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~  239 (302)
T 3s25_A          205 ---RDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFY  239 (302)
T ss_dssp             ---GTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEE
T ss_pred             ---CCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEE
Confidence               22 34444456654333222222  336776666653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.54  E-value=0.1  Score=54.78  Aligned_cols=269  Identities=8%  Similarity=0.050  Sum_probs=143.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCC-CCeeeecCCCcEEEEecCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTT-WPSIRFSSDEAVACRMATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~-~~~~~~S~d~~~la~~~~~~i~v~~~~~~   80 (434)
                      |++|...++|+..+...       ..|.+||..+++.. .+.... .... +.++...+++.+.+...++.|..|+....
T Consensus       133 i~~i~~d~~g~lwi~t~-------~gl~~~~~~~~~~~-~~~~~~-~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~  203 (795)
T 4a2l_A          133 VNGIEEISPEQLLISTP-------EGLIMFDIKESKFI-DDSFST-AMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQK  203 (795)
T ss_dssp             CCEEEEEETTEEEEEET-------TEEEEEETTTTEEE-CSSSCH-HHHTCCEEEEEEETTEEEEEESSSCEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEC-------CceEEEECCCCEEE-eccCCC-CCCcceEEEEECCCCCEEEEECCCCEEEEeCCCC
Confidence            56777778887665422       45888887766432 221100 0012 54677777888777555557888987553


Q ss_pred             CCcee-eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------ecccceeEEEECC
Q 013871           81 PKGIL-YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTVQLNWNR  151 (434)
Q Consensus        81 ~~~~~-~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~~~~ws~  151 (434)
                      ..... .......|.++...+++.-.++  ...     .-+.+|+..+   .+ +....        .....+.++...+
T Consensus       204 ~~~~~~~~~~~~~i~~i~~d~~g~lwig--t~~-----~Gl~~~~~~~---~~-~~~~~~~~~~~~~l~~~~i~~i~~d~  272 (795)
T 4a2l_A          204 TFEKVIPILGTKQIQAILQQSPTRIWVA--TEG-----AGLFLINPKT---KE-IKNYLHSPSNPKSISSNYIRSLAMDS  272 (795)
T ss_dssp             CEEECC----CCCEEEEEEEETTEEEEE--EBS-----SCEEEEETTT---TE-EEEECCCTTCTTSCSCSBEEEEEECT
T ss_pred             eEEEecCCCCCCeeEEEEEcCCCCEEEE--ECC-----CCeEEEeCCC---Ce-EEEeecCCCCccccCCCeEEEEEEcC
Confidence            21110 0011234555555544211111  111     1245555432   11 11111        1112344555566


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-------CCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-------KEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-------~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      +|... +.+.             .+|+.++.....-..+...       ....|.++...++|..-+   |...+-+..|
T Consensus       273 ~g~lW-igt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi---gt~~~Gl~~~  335 (795)
T 4a2l_A          273 QNRLW-IGTF-------------NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL---GTYFGGLNYY  335 (795)
T ss_dssp             TSCEE-EEES-------------SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE---EESSSCEEEE
T ss_pred             CCCEE-EEeC-------------ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE---EECCCCeEEe
Confidence            66532 2210             1244444332211111100       135799999999887655   5555678888


Q ss_pred             ecccceeEEe---------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe----------eCCCceEE
Q 013871          225 NKKCRPILEL---------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------RAECSVTS  285 (434)
Q Consensus       225 d~~~~~~~~~---------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~----------~~~~~~~~  285 (434)
                      |........+         ....|.++...++|++.+ |.   .++-|..||..+++.....          ....+..+
T Consensus       336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i  411 (795)
T 4a2l_A          336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GT---NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV  411 (795)
T ss_dssp             CGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE-EE---SSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred             CCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE-EE---CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence            8765443322         234588999999998655 44   2346999998876443221          12345567


Q ss_pred             EECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          286 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       286 ~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ...++|+.|..|+.      ++++.+|+..+.
T Consensus       412 ~~d~~g~~lWigt~------~~Gl~~~d~~~~  437 (795)
T 4a2l_A          412 YVDEKKSLVYIGTH------AGGLSILHRNSG  437 (795)
T ss_dssp             EEETTTTEEEEEET------TTEEEEEETTTC
T ss_pred             EEcCCCCEEEEEeC------cCceeEEeCCCC
Confidence            88889986677777      788888887543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.50  E-value=0.076  Score=50.98  Aligned_cols=226  Identities=5%  Similarity=-0.117  Sum_probs=119.0

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEE
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEV   98 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~   98 (434)
                      ...|+..++............    .....++|.+.+..|...  ..+.|+.+++....    ..............+++
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~----~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glav  166 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV  166 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSC----SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEE
T ss_pred             cceeEEEccCCcceeEecccc----CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEE
Confidence            356777777655433222221    233388999866655554  45789999876521    11111112345677888


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      .+.++ .| +|...   ..+.|.+.++..   ..........-.....+...|.+..|.+. ..  ..       ...|+
T Consensus       167 D~~~~-~l-Y~~d~---~~~~I~~~~~~g---~~~~~l~~~~~~~P~~iavdp~~g~ly~t-d~--~~-------~~~I~  228 (400)
T 3p5b_L          167 DWIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW--GT-------PAKIK  228 (400)
T ss_dssp             ETTTT-EE-EEEET---TTTEEEEECTTT---CSEEEEEECSSCCEEEEEEETTTTEEEEE-EC--SS-------SCCEE
T ss_pred             EecCC-ce-EEEEC---CCCeEEEEeCCC---CceEEEEeCCCCCcceEEEecccCeEEEE-eC--CC-------CCEEE
Confidence            77422 22 22221   224677776653   22111111111224467777766665442 11  11       12467


Q ss_pred             EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC-----CcCeeEEEECCCCCeEEE
Q 013871          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG-----SGPYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~-----~~~~~~i~~SP~g~~l~~  253 (434)
                      .++.+|.....+....-...+.++++|++..+.++ ......|..+|+.+.....+.     ...-..|+.  ++..|+.
T Consensus       229 ~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lyw  305 (400)
T 3p5b_L          229 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  305 (400)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEE
T ss_pred             EEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEE
Confidence            77777754333322222456889999998888874 445679999999765444331     112234444  4556666


Q ss_pred             EecCCCCCeEEEEEccCCEEEEEe
Q 013871          254 AGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +..++  +.|..+|..+++.+..+
T Consensus       306 td~~~--~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          306 TDIIN--EAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EESSS--CSEEEEESSSCCCCEEE
T ss_pred             ecCCC--CeEEEEEcCCCCceEEE
Confidence            65443  57777776666444433

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.45  E-value=0.039  Score=53.65  Aligned_cols=158  Identities=8%  Similarity=0.131  Sum_probs=87.4

Q ss_pred             CeeEEEEeC-CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871           92 GVAAFEVSK-APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        92 ~v~~~~~sp-~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ....++++| +.+. |  |+.+..   ..|+.+++..   . .+............+.|+++|+.|++.- .... ... 
T Consensus       138 ~P~~lavdp~~~g~-L--yv~d~~---~~I~~id~~~---~-~v~~~~~~~~~P~~ia~d~~G~~lyvad-~~~~-~~~-  204 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-L--YLVGEQ---HPTRLIDFEK---E-YVSTVYSGLSKVRTICWTHEADSMIITN-DQNN-NDR-  204 (430)
T ss_dssp             CCCEEEEETTEEEE-E--EEEEBT---EEEEEEETTT---T-EEEEEECCCSCEEEEEECTTSSEEEEEE-CCSC-TTS-
T ss_pred             CCCEEEECCCCCCe-E--EEEeCC---CcEEEEECCC---C-EEEEEecCCCCcceEEEeCCCCEEEEEe-CCCC-ccc-
Confidence            456778887 3222 2  222221   6777777754   2 2322222334567899999999766542 1110 110 


Q ss_pred             eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE---EeCC-cCeeEEEECC
Q 013871          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGS-GPYNTVRWNP  246 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~---~~~~-~~~~~i~~SP  246 (434)
                          ..++.+...+.......+......+.++++|++..+.+ +....++|..||..+..+.   .... ..-+.|+|+|
T Consensus       205 ----~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv-~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p  279 (430)
T 3tc9_A          205 ----PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYF-NSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP  279 (430)
T ss_dssp             ----EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEE-EETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT
T ss_pred             ----ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEE-EECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC
Confidence                12333333333221111112234578999994334443 3445679999998765442   2222 2356899999


Q ss_pred             CCCeEEEEecCCCCCeEEEEEcc
Q 013871          247 KGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       247 ~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      +|++|.++...+  +.|..+|.+
T Consensus       280 dG~~lyv~d~~~--~~I~~~~~d  300 (430)
T 3tc9_A          280 SGNYAYIVVVNQ--HYILRSDYD  300 (430)
T ss_dssp             TSSEEEEEETTT--TEEEEEEEE
T ss_pred             CCCEEEEEECCC--CEEEEEeCC
Confidence            999777776543  689998766

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.43  E-value=0.072  Score=50.25  Aligned_cols=242  Identities=12%  Similarity=0.077  Sum_probs=117.5

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCC-e------eEE
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPG-V------AAF   96 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~-v------~~~   96 (434)
                      .++.|..+|..+|+.+.++....   .....+.. .++.+++...++.|..+|..+...  ..+..... +      ...
T Consensus       111 ~~g~l~a~d~~tG~~~W~~~~~~---~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~  184 (376)
T 3q7m_A          111 EKAQVYALNTSDGTVAWQTKVAG---EALSRPVV-SDGLVLIHTSNGQLQALNEADGAV--KWTVNLDMPSLSLRGESAP  184 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSS---CCCSCCEE-ETTEEEEECTTSEEEEEETTTCCE--EEEEECCC-----CCCCCC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCC---ceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcE--EEEEeCCCCceeecCCCCc
Confidence            56889999999999987776542   11112222 256555555678999999876542  22222211 1      111


Q ss_pred             EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc-e---eE---EEECC--CCCeEEEEEEeccccc
Q 013871           97 EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS-T---VQ---LNWNR--GSTGLLAVAQSDVDKT  167 (434)
Q Consensus        97 ~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~-~---~~---~~ws~--~G~~l~~~~~~~~d~~  167 (434)
                      ....   ..  +|+.   ...+.+..++..+   ++.+-........ .   ..   +.-.|  .+..+++..   .   
T Consensus       185 ~~~~---~~--v~~g---~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~---~---  247 (376)
T 3q7m_A          185 TTAF---GA--AVVG---GDNGRVSAVLMEQ---GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA---Y---  247 (376)
T ss_dssp             EEET---TE--EEEC---CTTTEEEEEETTT---CCEEEEEECCC-----------CCCCCCEEETTEEEEEC---T---
T ss_pred             EEEC---CE--EEEE---cCCCEEEEEECCC---CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe---c---
Confidence            1111   11  1221   2234566666654   3333222211000 0   00   00000  122222211   0   


Q ss_pred             CceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeC---CcCeeEEE
Q 013871          168 NQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGPYNTVR  243 (434)
Q Consensus       168 ~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~---~~~~~~i~  243 (434)
                            ...|+.++...+... -... ......+..  ++..+.+  +..++.+..+|.+ ++.+....   ........
T Consensus       248 ------~g~l~~~d~~tG~~~-w~~~-~~~~~~~~~--~~~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~  315 (376)
T 3q7m_A          248 ------NGNLTALDLRSGQIM-WKRE-LGSVNDFIV--DGNRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV  315 (376)
T ss_dssp             ------TSCEEEEETTTCCEE-EEEC-CCCEEEEEE--ETTEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCE
T ss_pred             ------CcEEEEEECCCCcEE-eecc-CCCCCCceE--ECCEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCE
Confidence                  113555554332111 1111 122333433  3455554  3446789999985 44444432   12222222


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEe
Q 013871          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~  313 (434)
                      .  .+..|++++   .+|.|+++|.++++.+......  .+.. ...  .+..|+.++.      ++.+..|+
T Consensus       316 ~--~~~~l~v~~---~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~------~G~l~~~~  375 (376)
T 3q7m_A          316 L--YNGNLVVGD---SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK------DGTVYSIT  375 (376)
T ss_dssp             E--ETTEEEEEC---TTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT------TSCEEEEE
T ss_pred             E--ECCEEEEEe---CCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC------CCEEEEEe
Confidence            2  245666676   4579999999999988777652  2211 222  2456777777      88888876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.43  E-value=0.0043  Score=55.08  Aligned_cols=157  Identities=10%  Similarity=0.065  Sum_probs=96.0

Q ss_pred             cceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCCcCeeEEEECCCCCe
Q 013871          173 GESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKF  250 (434)
Q Consensus       173 g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~~~~~~i~~SP~g~~  250 (434)
                      |...|..++...+. ...+.+.  .........++++++.++ ...++.+.+||.+ .+.+.++.... ......++|+.
T Consensus        41 g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~~~ly~l-tw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~  116 (243)
T 3mbr_X           41 GRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWRDRLIQL-TWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSH  116 (243)
T ss_dssp             TSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEETTEEEEE-ESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSC
T ss_pred             CCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeCCEEEEE-EeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCE
Confidence            33456666665432 2333443  233333334456777775 4567899999996 45555553211 22344467887


Q ss_pred             EEEEecCCCCCeEEEEEccCCEEEEEeeCC-------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          251 LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       251 l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      |.++..   .+.|.++|.++.+.+..+.-.       ....++|. +|+.++..-.      ++.|.+-|. +|+.+...
T Consensus       117 L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~i  186 (243)
T 3mbr_X          117 LYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWI  186 (243)
T ss_dssp             EEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEE
T ss_pred             EEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEE
Confidence            777652   369999999999877766431       33457777 7775544334      667777776 45544443


Q ss_pred             ec---------------ccceeeEEEcCCCCCCCCc
Q 013871          323 MF---------------DKLFQAEWKPVSPDKFGDI  343 (434)
Q Consensus       323 ~~---------------~~~~~~~w~p~~~~~~~~~  343 (434)
                      ..               +.+..++|.|....+|-.+
T Consensus       187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            21               2567899999988888775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.42  E-value=0.096  Score=50.25  Aligned_cols=235  Identities=10%  Similarity=-0.087  Sum_probs=127.8

Q ss_pred             cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeec
Q 013871           62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFF  140 (434)
Q Consensus        62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~  140 (434)
                      .+|+....+.|+..++..... .........+..++|++.. ..| +|....   ...|..+++........... ....
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~-~~~~~~~~~~~~l~~d~~~-~~l-ywsD~~---~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVAS-NRI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSC-EEEECSCSCEEEEEEETTT-TEE-EEEETT---TTEEEEEEC------CCCEEEECSS
T ss_pred             ceeEEeccceeEEEccCCcce-eEeccccCcceEEeeeecc-Cce-EEEecC---CCeEEEEEcccCCCCCcceEEEeCC
Confidence            466667778999999876432 1122234567889999863 333 333221   23566666543100001111 1101


Q ss_pred             ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 013871          141 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS  220 (434)
Q Consensus       141 ~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~  220 (434)
                      -.....++..+.+..|.+. +.          +...|..++..+.....+....-.....++..|.+..+.+.-....+.
T Consensus       158 ~~~p~glavD~~~~~lY~~-d~----------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~  226 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK  226 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEE-ET----------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC
T ss_pred             CCCcccEEEEecCCceEEE-EC----------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE
Confidence            1122344455444544432 11          112356666666533222222234468999999777777643233468


Q ss_pred             EEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeC--CCceEEEECCCCCE
Q 013871          221 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRY  293 (434)
Q Consensus       221 v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~--~~~~~~~wspdg~~  293 (434)
                      |..+++.+.....+   .-..-+.|+++|++..|.++..++  +.|+.+|++..  +.+.....  .....++.  ++..
T Consensus       227 I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~  302 (400)
T 3p5b_L          227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDK  302 (400)
T ss_dssp             EEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTE
T ss_pred             EEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCE
Confidence            99999987655444   224568899999999998887554  68999998754  23322211  23344555  4555


Q ss_pred             EEEEEcCCceeeCCcEEEEe-ecCceeeee
Q 013871          294 FMTATTAPRLQIDNGIKIFH-HNGSLFFKK  322 (434)
Q Consensus       294 l~tas~~prl~~D~~i~iw~-~~g~~~~~~  322 (434)
                      |+.+...     .+.|..++ .+|+.+...
T Consensus       303 lywtd~~-----~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          303 VFWTDII-----NEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEEESS-----SCSEEEEESSSCCCCEEE
T ss_pred             EEEecCC-----CCeEEEEEcCCCCceEEE
Confidence            5555442     67788887 677655443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.41  E-value=0.17  Score=52.98  Aligned_cols=230  Identities=10%  Similarity=-0.101  Sum_probs=124.2

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCC-CCceeeeeecc
Q 013871           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQ-SQPLARRSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~-~~~i~~~~~~~  141 (434)
                      +|+......|+..++..... .........+..+++.+.. ..| +|....   ...|..+++..... ...........
T Consensus       397 ~Ll~an~~~Ir~i~l~~~~~-~~l~~~~~~~~gl~~d~~~-~~l-Y~sD~~---~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVAS-NRI-YWSDLS---QRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEECBSSEEEECTTSCCC-EEEECSCSSEEEEEEETTT-TEE-EEEETT---TTEEEEEEC--------CEEEECSSC
T ss_pred             ccccccccceeEeeccCCcc-eeeecCCCceEEEeecccC-Cee-EEeecc---ceeEEEEeccCCCCCcceeEEEecCC
Confidence            55555556788887765332 2222234567788888753 222 333221   24566666643100 01111111011


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .....|+....+..|.+. ..          +...|+.++..|.....+..........|++.|.+..|++.--...+.|
T Consensus       471 ~~P~GLAvD~~~~~LY~t-D~----------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcceeeeeecCCcEEEE-ec----------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence            122345555556555442 11          1224666676665433332222345789999998777776433334689


Q ss_pred             EEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC----CCceEEEECCCCCEE
Q 013871          222 TIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----ECSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~----~~~~~~~wspdg~~l  294 (434)
                      ...++.+.....+.   -..-+.|++.|.+..|.++..++  ..|+..|++..........    .....|+.  ++.+|
T Consensus       540 ~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~--~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~l  615 (791)
T 3m0c_C          540 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKV  615 (791)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEE
T ss_pred             EEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC--CcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEE
Confidence            99999876655552   24567899999998888887554  6899999875432222222    13334554  45577


Q ss_pred             EEEEcCCceeeCCcEEEEe-ecCce
Q 013871          295 MTATTAPRLQIDNGIKIFH-HNGSL  318 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~-~~g~~  318 (434)
                      +.+...     .+.|...+ ++|+.
T Consensus       616 YwtD~~-----~~~I~~~dk~tG~~  635 (791)
T 3m0c_C          616 FWTDII-----NEAIFSANRLTGSD  635 (791)
T ss_dssp             EEEETT-----TTEEEEEETTTCCC
T ss_pred             EEEECC-----CCEEEEEeCCCCcc
Confidence            766652     45666665 45643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.39  E-value=0.032  Score=57.45  Aligned_cols=283  Identities=11%  Similarity=0.029  Sum_probs=131.6

Q ss_pred             eEEecC-CCcEEEEEecCCCC----C--CCcEEEEEcCCCcE--EEEEeecCcCCCCC-CeeeecCCCcEEEEec--CCe
Q 013871            4 LLTCLR-VGLIIQTFQKSSTP----Q--EKNVILWKTETGEA--VYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--TNE   71 (434)
Q Consensus         4 ~l~fSP-~g~~L~t~~~~~~~----~--d~~v~iWd~~~g~~--~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~~~   71 (434)
                      ++++.| +|+.++..+.....    .  ...+.+||..+++.  +.......   ..+ ...++..|+++++.++  ++.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~---~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH---DMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC---CCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC---CCccccccCCCCCCEEEeCCCCCCc
Confidence            567788 78877776632110    1  12688999988763  22222211   222 1367789999999885  358


Q ss_pred             EEEEeCCCCCCceeeeeecCCe-eEEEEeCCCCCeEEEEe-cCCCCCCceEEEEEcCCCCCCCceee-----eeecccce
Q 013871           72 IQFFDTTDFPKGILYRLRVPGV-AAFEVSKAPGSHVAVFV-PESKGSPASVQIYACGKDLQSQPLAR-----RSFFRCST  144 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v-~~~~~sp~~~~~ia~~~-~~~~~~~~~v~i~~~~~~~~~~~i~~-----~~~~~~~~  144 (434)
                      +.+||.....-.....+..... ......++ +.++++-- .+.......+.+|+..+   ..-...     ........
T Consensus       267 v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t---~~W~~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSS---KTWTSLPNAKVNPMLTADK  342 (656)
T ss_dssp             EEEEEGGGTEEEECCCCSSCCSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTT---TEEEEETTSCSGGGCCCCT
T ss_pred             eEEecCcCCceeECCCCCccccccceEEecC-CeEEEEeCcccCCcccccceEeCCCC---CcceeCCCccccccccccc
Confidence            9999976532111111121211 12334444 33222210 01111235688888765   111000     00000000


Q ss_pred             eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC----------CCCCeEEEEECcCCCEEEEEE
Q 013871          145 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR----------KEGPVHDVQWSYSGSEFAVVY  214 (434)
Q Consensus       145 ~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~----------~~~~i~~v~wspdg~~~av~~  214 (434)
                       ...+..++. +.++...  +...........++.++.....-. .+..          ....-..+.+...+..+.++ 
T Consensus       343 -~~~~~~~~~-iyv~Gg~--~g~~~~~~~~~~v~~yd~~~~~w~-~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~-  416 (656)
T 1k3i_A          343 -QGLYRSDNH-AWLFGWK--KGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF-  416 (656)
T ss_dssp             -TGGGTTTCS-CCEEECG--GGCEEECCSSSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEE-
T ss_pred             -cceeecCCc-eEEEECC--CCcEEEecCccceeeeecCCccee-ecCCccccccccCCCCCCCceEeccCCCCeEEEE-
Confidence             001112222 2222111  110000001122333333222100 0100          01122445554434555554 


Q ss_pred             ccCC--------C---eEEEEecccceeEEe-----CCcC-eeEEEECCCCCeEEEEecCC--------CCCeEEEEEcc
Q 013871          215 GFMP--------A---SATIFNKKCRPILEL-----GSGP-YNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDYV  269 (434)
Q Consensus       215 g~~~--------~---~v~l~d~~~~~~~~~-----~~~~-~~~i~~SP~g~~l~~~~~~~--------~~g~i~iwd~~  269 (434)
                      |..+        .   .+.+||.....-...     +... ..++...|+|+++++||.+.        ...++++||..
T Consensus       417 GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence            4422        1   577888765443332     2222 23557789999999998542        12579999998


Q ss_pred             CCEEEEE--eeCC--CceEEEECCCCCEEEEEEc
Q 013871          270 DGKQLGT--TRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       270 ~~~~i~~--~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                      +.+-...  ...+  ........|||+.++.|+.
T Consensus       497 t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          497 QDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             GTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            7753322  2222  2233567899999999885

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.38  E-value=0.089  Score=48.78  Aligned_cols=231  Identities=8%  Similarity=-0.047  Sum_probs=124.9

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871           63 VACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      +|+.+..+.|+.+++..........+ .......+.|.+.. ..| +|+.-.   ...|..+++........+....+  
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~l-yw~D~~---~~~I~r~~~~g~~~~~~~~~~~l--   78 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLI-YWSDVS---EEAIKRTEFNKTESVQNVVVSGL--   78 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEE-EEEETT---TTEEEEEETTSSSCCCEEEEECC--
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEE-EEEECC---CCcEEEEEccCCCceEEEEcCCC--
Confidence            45556667899999876431111111 23346678888853 222 343321   24666666654110011111111  


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .....+.+.+.+..|.+. ..          +...|..++..+.....+..........+++.|.+..+.+......+.|
T Consensus        79 ~~p~glavd~~~g~ly~~-d~----------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I  147 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWT-DS----------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI  147 (318)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEE
T ss_pred             CCccEEEEEcCCCeEEEE-EC----------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEE
Confidence            122345555555554432 11          1123566666664322222122345689999998777766432235689


Q ss_pred             EEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEE
Q 013871          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMT  296 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~t  296 (434)
                      ..+++.+.....+   .-..-+.|+|+|++..|..+..++  +.|+.+|.+..  +.+.......+..++..  +..++.
T Consensus       148 ~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~--~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lyw  223 (318)
T 3sov_A          148 ERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKL--NFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYW  223 (318)
T ss_dssp             EEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCC--CEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEE
Confidence            9999876554443   223458899999999888887554  79999998743  33322112244445553  345555


Q ss_pred             EEcCCceeeCCcEEEEee-cCceee
Q 013871          297 ATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       297 as~~prl~~D~~i~iw~~-~g~~~~  320 (434)
                      +...     .+.|..++. +|+...
T Consensus       224 td~~-----~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          224 TDWS-----THSILACNKYTGEGLR  243 (318)
T ss_dssp             EETT-----TTEEEEEETTTCCSCE
T ss_pred             EecC-----CCeEEEEECCCCCceE
Confidence            4442     667777776 576543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.37  E-value=0.15  Score=51.34  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=48.5

Q ss_pred             CCeEEEEecc-cceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013871          218 PASATIFNKK-CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR  292 (434)
Q Consensus       218 ~~~v~l~d~~-~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~  292 (434)
                      .+.+..+|.+ ++.+-++. ..+.........|..+++++   .+|.|+.+|.++++.+..+.... +  .-+.+..||+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~---~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~  519 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYAT---LDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK  519 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEc---CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence            3578888886 44444442 22222222233456666665   56899999999999998887542 1  2255667777


Q ss_pred             EEEEEEc
Q 013871          293 YFMTATT  299 (434)
Q Consensus       293 ~l~tas~  299 (434)
                      .++....
T Consensus       520 ~yv~~~~  526 (571)
T 2ad6_A          520 QYIGSMY  526 (571)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEC
Confidence            5555443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.33  E-value=0.08  Score=51.42  Aligned_cols=202  Identities=7%  Similarity=0.129  Sum_probs=107.0

Q ss_pred             CeeEEEEeCC-CCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCce
Q 013871           92 GVAAFEVSKA-PGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS  170 (434)
Q Consensus        92 ~v~~~~~sp~-~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~  170 (434)
                      ....++|+|+ .+..|  |+.+..   ..|+.++...   +. +............+.++++|. |++ +.... ...  
T Consensus       140 ~P~gvavd~~s~~g~L--yv~D~~---~~I~~id~~~---g~-v~~~~~~~~~P~giavd~dG~-lyV-ad~~~-~~~--  205 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDL--YWVGQR---DAFRHVDFVN---QY-VDIKTTNIGQCADVNFTLNGD-MVV-VDDQS-SDT--  205 (433)
T ss_dssp             CCCEEEECTTTTTCEE--EEECBT---SCEEEEETTT---TE-EEEECCCCSCEEEEEECTTCC-EEE-EECCS-CTT--
T ss_pred             CCceEEEccccCCCEE--EEEeCC---CCEEEEECCC---CE-EEEeecCCCCccEEEECCCCC-EEE-EcCCC-Ccc--
Confidence            4567888884 22222  222221   6777777754   22 222222223456889999999 544 32211 000  


Q ss_pred             eecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccccee-EE---eCC-cCeeEEEEC
Q 013871          171 YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LE---LGS-GPYNTVRWN  245 (434)
Q Consensus       171 ~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~-~~---~~~-~~~~~i~~S  245 (434)
                         ...++.+...+.......+........++++|++..+.+ +....+.|..+|.....+ ..   ... .....|+|+
T Consensus       206 ---~~gv~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv-~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~d  281 (433)
T 4hw6_A          206 ---NTGIYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYY-TRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWH  281 (433)
T ss_dssp             ---SEEEEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEE-CBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEEC
T ss_pred             ---cceEEEEECCCCeeccccccccCCCCEEEEeCCCCeEEE-EECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEe
Confidence               112333332222211111111234567899994334443 344566899999873322 22   222 223469999


Q ss_pred             CCCCeEEEEecCCCCCeEEEEEcc--CCE-----EEEEe-e-------------CCCceEEEE---------CCCCCEEE
Q 013871          246 PKGKFLCLAGFGNLPGDMAFWDYV--DGK-----QLGTT-R-------------AECSVTSEW---------SPDGRYFM  295 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~i~iwd~~--~~~-----~i~~~-~-------------~~~~~~~~w---------spdg~~l~  295 (434)
                      |+|++|.++..++  +.|..+|.+  +++     .+... .             -..+..+++         .++|..++
T Consensus       282 pdG~~LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyv  359 (433)
T 4hw6_A          282 PTGDWAYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYF  359 (433)
T ss_dssp             TTSSEEEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred             CCCCEEEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEE
Confidence            9999888777544  689998865  332     12111 0             012445888         67776655


Q ss_pred             EEEcCCceeeCCcEEEEeecCcee
Q 013871          296 TATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                      +-+.      .+.|+.++.+|.+.
T Consensus       360 aD~~------n~~I~~~~~~G~v~  377 (433)
T 4hw6_A          360 CDRD------SHTVRVLTPEGRVT  377 (433)
T ss_dssp             EETT------TTEEEEECTTSEEE
T ss_pred             EECC------CCEEEEECCCCCEE
Confidence            5444      67788888777543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.29  E-value=0.17  Score=52.12  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=43.0

Q ss_pred             CeEEEEEccCCEEEEEeeCCCc-eEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013871          261 GDMAFWDYVDGKQLGTTRAECS-VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       261 g~i~iwd~~~~~~i~~~~~~~~-~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                      |.|.-||..+++.+........ ........|..+++++.      |+.+++||. +|+++.+..
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~------dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA------AGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT------TSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC------cccchhhhhhcChhheEec
Confidence            7899999999998877765422 22355567888888877      999999997 577776553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.29  E-value=0.061  Score=48.10  Aligned_cols=176  Identities=8%  Similarity=0.092  Sum_probs=109.6

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      +...+.|+|++..|.++...           ...|+.++..+.....+++........+++.+++. |+++ ...++.+.
T Consensus        28 ~lSGla~~~~~~~L~aV~d~-----------~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~-~~vs-~E~~~~l~   94 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINK-----------PAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQ-FVIS-DERDYAIY   94 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEET-----------TEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTE-EEEE-ETTTTEEE
T ss_pred             CcceeEEeCCCCEEEEEECC-----------CCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCE-EEEE-ECCCCcEE
Confidence            45678999998877665322           22478888877666677776556788999998875 5443 44567899


Q ss_pred             EEecccce----eE--Ee------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc--cC--CEEEEE------eeCC
Q 013871          223 IFNKKCRP----IL--EL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VD--GKQLGT------TRAE  280 (434)
Q Consensus       223 l~d~~~~~----~~--~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~--~~--~~~i~~------~~~~  280 (434)
                      +|++....    +.  .+      .......|+|+|.++.|.++.-.. ...|+.|+-  .+  ...+..      ....
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~-p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN-PIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS-SEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC-CceEEEEcccccCCceeeecchhhccccccC
Confidence            98764211    11  11      123346899999997666665221 224555551  11  122111      0112


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc-----------cceeeEEEcCCC
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-----------KLFQAEWKPVSP  337 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~-----------~~~~~~w~p~~~  337 (434)
                      ....+++.|...+|++.+..     .+.+.++|.+|+.+......           .--.+++.|++.
T Consensus       174 d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             CceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            55679999987777777764     67888899999866554332           345677777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.27  E-value=0.19  Score=52.77  Aligned_cols=221  Identities=5%  Similarity=-0.105  Sum_probs=115.6

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCC----CceeeeeecCCeeEEEEe
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFP----KGILYRLRVPGVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~----~~~~~~~~~~~v~~~~~s   99 (434)
                      ..|+..++..++........    .....++|.+.+..|...  ..+.|+.+++....    ........+.....+++.
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~~----~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD  479 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPNL----RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD  479 (791)
T ss_dssp             SSEEEECTTSCCCEEEECSC----SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             cceeEeeccCCcceeeecCC----CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence            45676676654432222211    223378898865554444  34688888876521    111111123456677887


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecc-eeEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLN  178 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~-~~l~  178 (434)
                      +.++ .| +|...   ..+.|.+.++..   ..........-.....|+..|.+..|.+. ..          |. ..|+
T Consensus       480 ~~~~-~L-Y~tD~---~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~g~LYwt-D~----------g~~~~I~  540 (791)
T 3m0c_C          480 WIHS-NI-YWTDS---VLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW----------GTPAKIK  540 (791)
T ss_dssp             TTTT-EE-EEEET---TTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC----------SSSCEEE
T ss_pred             ecCC-cE-EEEec---CCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCCCCEEEe-cC----------CCCCeEE
Confidence            7633 22 33322   235777777754   22111111111234467777766665442 11          11 2467


Q ss_pred             EEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---Cc--CeeEEEECCCCCeEEE
Q 013871          179 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCL  253 (434)
Q Consensus       179 ~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~--~~~~i~~SP~g~~l~~  253 (434)
                      .+++.|.....+....-.....|++.+.+..|+++ ......|..+|+.+.....+.   ..  .-..|++  ++.+|++
T Consensus       541 ~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYw  617 (791)
T 3m0c_C          541 KGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFW  617 (791)
T ss_dssp             EEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEE
T ss_pred             EEecCCCceEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEE
Confidence            77777754333322223456889999888888775 445669999999766544441   11  1223443  4556666


Q ss_pred             EecCCCCCeEEEEEccCCEEE
Q 013871          254 AGFGNLPGDMAFWDYVDGKQL  274 (434)
Q Consensus       254 ~~~~~~~g~i~iwd~~~~~~i  274 (434)
                      +...+  +.|...|..+++.+
T Consensus       618 tD~~~--~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          618 TDIIN--EAIFSANRLTGSDV  636 (791)
T ss_dssp             EETTT--TEEEEEETTTCCCC
T ss_pred             EECCC--CEEEEEeCCCCcce
Confidence            66544  67777776666433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.25  E-value=0.12  Score=47.73  Aligned_cols=232  Identities=9%  Similarity=-0.082  Sum_probs=124.6

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee-eeecc
Q 013871           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR-RSFFR  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~-~~~~~  141 (434)
                      +|+.+..++|+..++....... .--.......+.|++.++ .+ +|...   ..+.|..+++.....+..... ....-
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~-~~~~~~~p~g~~~d~~~~-~l-y~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDTEVASN-RI-YWSDL---SQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEE-EECSCSSEEEEEEETTTT-EE-EEEET---TTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCcceEe-hhcCCCceEEEEEEeCCC-EE-EEEEC---CCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            5666667789999987643211 111245678889988633 32 33322   234666666643100011111 11000


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .....+.+.+.+..|.+. ..          +...|..++..+.....+.-.......+++..|.+..+.+......+.|
T Consensus        77 ~~p~glavd~~~~~ly~~-d~----------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (316)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcCEEEEeecCCeEEEE-EC----------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeE
Confidence            122345555555555432 11          1123555665554322221112345689999997777766432223689


Q ss_pred             EEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEee--CCCceEEEECCCCCEE
Q 013871          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTR--AECSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~--~~~~~~~~wspdg~~l  294 (434)
                      ..+++.+.....+   .-..-+.|+|+|++..|.++...+  +.|+.+|.+..  +.+....  ......+++.  +..|
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~l  221 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV  221 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEE
Confidence            9999876654444   234467899999999888887544  79999998743  3333221  1234456663  3455


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceee
Q 013871          295 MTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~-~g~~~~  320 (434)
                      +.+...     .+.|..++. +|+.+.
T Consensus       222 y~~d~~-----~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          222 FWTDII-----NEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEETT-----TTEEEEEETTTCCCCE
T ss_pred             EEEECC-----CCeEEEEeCCCCcceE
Confidence            554442     667777774 676443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.20  E-value=0.13  Score=47.10  Aligned_cols=215  Identities=7%  Similarity=-0.026  Sum_probs=113.9

Q ss_pred             CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCcee
Q 013871           92 GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY  171 (434)
Q Consensus        92 ~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~  171 (434)
                      ....++|+|++ ..+  +..   ...+.|..++...    ....... .......+.+.++|+ |++ +....+.     
T Consensus        33 ~pegia~~~~g-~ly--v~d---~~~~~I~~~d~~g----~~~~~~~-~~~~p~gia~~~dG~-l~v-ad~~~~~-----   94 (306)
T 2p4o_A           33 FLENLASAPDG-TIF--VTN---HEVGEIVSITPDG----NQQIHAT-VEGKVSGLAFTSNGD-LVA-TGWNADS-----   94 (306)
T ss_dssp             CEEEEEECTTS-CEE--EEE---TTTTEEEEECTTC----CEEEEEE-CSSEEEEEEECTTSC-EEE-EEECTTS-----
T ss_pred             CcceEEECCCC-CEE--EEe---CCCCeEEEECCCC----ceEEEEe-CCCCceeEEEcCCCc-EEE-EeccCCc-----
Confidence            35678888864 322  111   1124555555432    2222111 223456788999998 333 3221110     


Q ss_pred             ecceeEEEEeeCCc-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe-----------CCc
Q 013871          172 YGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----------GSG  237 (434)
Q Consensus       172 ~g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~-----------~~~  237 (434)
                         ..++.++.... ......+........++..+++ .+.+ +....+.|+++|....  .+...           .-.
T Consensus        95 ---~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v-~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A           95 ---IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLT-ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             ---CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEE-EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ---ceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEE-EECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence               11344432222 1112222222233455555544 3333 3444678999997642  22210           011


Q ss_pred             CeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-C-----EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          238 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       238 ~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~-----~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                      ..+.|  +|+|++|.++...+  +.|..+|++. +     +.+..+  .....++++++|+.+++...      .+.|.+
T Consensus       170 ~pngi--s~dg~~lyv~d~~~--~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~------~~~V~~  237 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHI------YNSVVR  237 (306)
T ss_dssp             SEEEE--EEETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBT------TCCEEE
T ss_pred             cCCCc--CcCCCEEEEEeCCC--CEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCC------CCeEEE
Confidence            23556  89999888887544  7999999874 3     222222  23445899999987665555      788999


Q ss_pred             EeecCceee--eee--cccceeeEEE---cCCCCCCC
Q 013871          312 FHHNGSLFF--KKM--FDKLFQAEWK---PVSPDKFG  341 (434)
Q Consensus       312 w~~~g~~~~--~~~--~~~~~~~~w~---p~~~~~~~  341 (434)
                      ++.+|++..  ...  ......+++.   |+...||-
T Consensus       238 ~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyV  274 (306)
T 2p4o_A          238 IAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYV  274 (306)
T ss_dssp             ECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             ECCCCCEEEEeecccccCCceEEEEecccCCCCEEEE
Confidence            999887633  222  2346677777   66555554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.16  E-value=0.17  Score=47.65  Aligned_cols=240  Identities=13%  Similarity=0.141  Sum_probs=112.0

Q ss_pred             CCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeee-----cCCeeEEEEeCC---CCCeEEEEecCCCCCCceEE
Q 013871           50 TTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLR-----VPGVAAFEVSKA---PGSHVAVFVPESKGSPASVQ  121 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~-----~~~v~~~~~sp~---~~~~ia~~~~~~~~~~~~v~  121 (434)
                      ..| .++|.|||+++++-..+.|.+++ .. .......+.     ..+...++++|+   ++....++.....+....|.
T Consensus        32 ~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPW-ALAFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEE-EEEECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             Cce-EEEEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            345 89999999988887778999998 22 111111111     246788999997   33333333322111124555


Q ss_pred             EEEcCCCCC--CCceee-ee---ecccceeEEEECCCCCeEEEEEEecccccCce---eecceeEEEEeeCCcc------
Q 013871          122 IYACGKDLQ--SQPLAR-RS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQS---YYGESKLNYLTTDGTH------  186 (434)
Q Consensus       122 i~~~~~~~~--~~~i~~-~~---~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~---~~g~~~l~~l~~~~~~------  186 (434)
                      .+++.....  .+.+.. ..   .....-..+.|.|+|. |.+ +..+.......   -.....++.++..+..      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv-~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYV-TTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEE-ECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEE-EECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            666543100  011111 11   0011235789999994 443 32221100000   0011246666655511      


Q ss_pred             -------eeeeecCCCCCeEEEEECc-CCCEEEEEEccCC------CeEEEEeccc-----------------ceeEEeC
Q 013871          187 -------EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMP------ASATIFNKKC-----------------RPILELG  235 (434)
Q Consensus       187 -------~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~------~~v~l~d~~~-----------------~~~~~~~  235 (434)
                             ........ .....++|+| +|..++.-.+...      ..+.+...-.                 .++..+.
T Consensus       187 ~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          187 LGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             cCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                   01111110 1135689999 5665553222211      1244432111                 1222331


Q ss_pred             -CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE----E--EEE-ee-CCCceEEEECCCCCEEEEEEc
Q 013871          236 -SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----Q--LGT-TR-AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       236 -~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~----~--i~~-~~-~~~~~~~~wspdg~~l~tas~  299 (434)
                       ......++| .+|.+++ +...  .+.|...+++...    .  ... +. ...+..+++.|||..+++...
T Consensus       266 ~~~ap~G~~~-~~G~l~v-~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          266 QGFPPGNLAF-FRGDLYV-AGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             TCCCEEEEEE-ETTEEEE-EETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             CCCCCcceEE-ECCEEEE-EECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence             122345666 4565544 4432  2578777765321    0  111 12 235677999999987666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.10  E-value=0.031  Score=50.09  Aligned_cols=159  Identities=12%  Similarity=0.060  Sum_probs=90.9

Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCc-ceeeeecC
Q 013871          115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR  193 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~-~~~~v~l~  193 (434)
                      +..+.|+.+++.+   ++.+.+. ... .....-..++|..|.+++-           .+..++.++.... ....++..
T Consensus        72 G~~g~v~~iD~~T---gkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw-----------~~~~v~V~D~~Tl~~~~ti~~~  135 (268)
T 3nok_A           72 GHQGTLRQLSLES---AQPVWME-RLG-NIFAEGLASDGERLYQLTW-----------TEGLLFTWSGMPPQRERTTRYS  135 (268)
T ss_dssp             TTTTEEEECCSSC---SSCSEEE-ECT-TCCEEEEEECSSCEEEEES-----------SSCEEEEEETTTTEEEEEEECS
T ss_pred             CCCCEEEEEECCC---CcEEeEE-CCC-CcceeEEEEeCCEEEEEEc-----------cCCEEEEEECCcCcEEEEEeCC
Confidence            4556689999887   6666655 322 2111112334566555421           1223555554332 12334443


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe----C---CcCeeEEEECCCCCeEEEEecCCCCCeEEE
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF  265 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~----~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~i  265 (434)
                      .++    ...++|++.|++..  ..++|.++|.++. .+..+    .   -...|.+.|. +|+..+..-.   ...|.+
T Consensus       136 ~eG----wGLt~Dg~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~---s~~I~v  205 (268)
T 3nok_A          136 GEG----WGLCYWNGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH---SSDVLE  205 (268)
T ss_dssp             SCC----CCEEEETTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT---CSEEEE
T ss_pred             Cce----eEEecCCCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC---CCeEEE
Confidence            222    23336788888743  3679999998653 33333    1   2245788888 7865543332   359999


Q ss_pred             EEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013871          266 WDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       266 wd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~  299 (434)
                      .|.++++.+..+...              ++.. ++|+|+++.|++++.
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            999999988877642              2333 999998665555443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.09  E-value=0.14  Score=45.33  Aligned_cols=177  Identities=10%  Similarity=0.068  Sum_probs=98.7

Q ss_pred             eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee
Q 013871           93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY  172 (434)
Q Consensus        93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~  172 (434)
                      ...+.|+++   .  +|........+.|+.+++.+   ++.+......... ...-....|..|..++-           
T Consensus        23 tqGL~~~~~---~--LyestG~~g~S~v~~vD~~t---gkv~~~~~l~~~~-fgeGi~~~~~~ly~ltw-----------   82 (243)
T 3mbr_X           23 TEGLFYLRG---H--LYESTGETGRSSVRKVDLET---GRILQRAEVPPPY-FGAGIVAWRDRLIQLTW-----------   82 (243)
T ss_dssp             EEEEEEETT---E--EEEEECCTTSCEEEEEETTT---CCEEEEEECCTTC-CEEEEEEETTEEEEEES-----------
T ss_pred             cccEEEECC---E--EEEECCCCCCceEEEEECCC---CCEEEEEeCCCCc-ceeEEEEeCCEEEEEEe-----------
Confidence            456677753   1  22222222246899999987   6666665443211 11111123555555421           


Q ss_pred             cceeEEEEeeCCc-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEeC-------CcCeeEEE
Q 013871          173 GESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG-------SGPYNTVR  243 (434)
Q Consensus       173 g~~~l~~l~~~~~-~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~~-------~~~~~~i~  243 (434)
                      .+..++.++.... ....++...++  ..+  .+|+..+.+. . ..++|.++|.++. .+..+.       -...|.+.
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~dg~~L~vS-d-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe  156 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPGEG--WAL--TSDDSHLYMS-D-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE  156 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSSCC--CEE--EECSSCEEEE-C-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             eCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeCCCEEEEE-C-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence            1223555554332 12334443322  334  4678877763 3 3679999998643 333331       23567888


Q ss_pred             ECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--------------CceE-EEECCCCCEEEEEEc
Q 013871          244 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------------CSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       244 ~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--------------~~~~-~~wspdg~~l~tas~  299 (434)
                      |. +|+..+-.-..   ..|.+.|.++++.+..+...              ++.. ++|+|+++.|.+++.
T Consensus       157 ~~-~G~lyanvw~s---~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          157 WV-NGELLANVWLT---SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EE-TTEEEEEETTT---TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             Ee-CCEEEEEECCC---CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            87 67755433323   49999999999988877632              2333 999998777666654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.99  E-value=0.038  Score=54.44  Aligned_cols=155  Identities=12%  Similarity=0.109  Sum_probs=91.2

Q ss_pred             eeEEEECC-CCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ecCC--CCCeEEEEE-------CcCCCEEEE
Q 013871          144 TVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PLRK--EGPVHDVQW-------SYSGSEFAV  212 (434)
Q Consensus       144 ~~~~~ws~-~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~--~~~i~~v~w-------spdg~~~av  212 (434)
                      ...|.+.| ++..|.++. .          ....|..++..+.....+ ....  ......++|       +++|+.+.+
T Consensus       141 p~~la~dp~~~~~Lyv~~-~----------~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyv  209 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICY-D----------GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIV  209 (496)
T ss_dssp             EEEEEEETTEEEEEEEEE-E----------TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred             CCEEEEccCCCCEEEEEE-C----------CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEE
Confidence            34677887 355554432 1          112366666555432222 1111  124789999       999996665


Q ss_pred             EEccCC------CeEEEEeccc--cee-----EEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc-------CC
Q 013871          213 VYGFMP------ASATIFNKKC--RPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-------DG  271 (434)
Q Consensus       213 ~~g~~~------~~v~l~d~~~--~~~-----~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~-------~~  271 (434)
                      . ....      ..+.+++...  ...     ..+ .-...+.++.+|++.+|.++..++  +.|+.+|.+       ++
T Consensus       210 a-d~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~--g~V~r~d~~~~~~~~~tg  286 (496)
T 3kya_A          210 A-IDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEK--GQVFRLDLVDYFKTIKNG  286 (496)
T ss_dssp             E-ECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTT--TEEEEECHHHHHHHHHTT
T ss_pred             E-eCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCC--CEEEEEecccccccccCc
Confidence            3 3322      2466675332  110     111 112346789999877777777654  789999987       45


Q ss_pred             EE--------------EEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          272 KQ--------------LGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       272 ~~--------------i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +.              +.... ......++|+|+|++|+.+...     .+.|+.+++++.
T Consensus       287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg~  342 (496)
T 3kya_A          287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDEI  342 (496)
T ss_dssp             CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEETT
T ss_pred             eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCCC
Confidence            42              22222 2345679999999987777653     677888887663

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.98  E-value=0.0088  Score=53.64  Aligned_cols=128  Identities=9%  Similarity=-0.065  Sum_probs=83.8

Q ss_pred             CcCCCEEEEEEccCCCeEEEEeccc-ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--
Q 013871          204 SYSGSEFAVVYGFMPASATIFNKKC-RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--  280 (434)
Q Consensus       204 spdg~~~av~~g~~~~~v~l~d~~~-~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--  280 (434)
                      .++++.+.++ ...++.+.+||.+. +.+.++.... .....++||+.|+++..   .+.|.++|.++.+.+..+.-.  
T Consensus       102 t~~g~~Ly~l-tw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          102 ASDGERLYQL-TWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             EECSSCEEEE-ESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECS---SSEEEEECTTTCCEEEEEECEET
T ss_pred             EEeCCEEEEE-EccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCC
Confidence            3456677665 45678999999864 5555553211 12233467888877762   369999999999877766431  


Q ss_pred             -----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec---------------ccceeeEEEcCCCCC
Q 013871          281 -----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF---------------DKLFQAEWKPVSPDK  339 (434)
Q Consensus       281 -----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~---------------~~~~~~~w~p~~~~~  339 (434)
                           ....++|. +|+.++..-.      ++.|.+-|. +|+.+.....               +.+..++|.|....+
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl  249 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI  249 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred             CcccccccccEEe-CCEEEEEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence                 33447888 8864443334      667777776 5555544432               256789999998888


Q ss_pred             CCCc
Q 013871          340 FGDI  343 (434)
Q Consensus       340 ~~~~  343 (434)
                      |-.+
T Consensus       250 fVTG  253 (268)
T 3nok_A          250 FMTG  253 (268)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.84  E-value=0.32  Score=45.68  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=58.0

Q ss_pred             CCeEEEEECcCCCEEEEEEcc-----------------CCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEec
Q 013871          196 GPVHDVQWSYSGSEFAVVYGF-----------------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~-----------------~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      ...+++...++|+.++  ++.                 ..+.+..||..  .+..+  .-..-|.|+|||||+.|.++..
T Consensus       165 ~~pND~~v~~~G~fyv--t~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt  240 (355)
T 3sre_A          165 PSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAEL  240 (355)
T ss_dssp             SSEEEEEEEETTEEEE--EESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             CCCceEEEeCCCCEEe--cCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeC
Confidence            3567888888876544  221                 11355555553  22211  2244689999999999888875


Q ss_pred             CCCCCeEEEEEcc-CCEE--EEEeeCCCce-EEEECC-CCCEEEEEE
Q 013871          257 GNLPGDMAFWDYV-DGKQ--LGTTRAECSV-TSEWSP-DGRYFMTAT  298 (434)
Q Consensus       257 ~~~~g~i~iwd~~-~~~~--i~~~~~~~~~-~~~wsp-dg~~l~tas  298 (434)
                      ..  +.|+.||++ +++.  ...+.....- .++..+ +|++.+++.
T Consensus       241 ~~--~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          241 LA--HKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             GG--TEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CC--CeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            43  689999986 3321  2233222222 388888 588776654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.74  E-value=0.0083  Score=62.29  Aligned_cols=113  Identities=11%  Similarity=0.035  Sum_probs=74.7

Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--  272 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--  272 (434)
                      ...+++.+.+..|++ +....+.|.++++.+..+..+.   ...-+.|++.|.+.+|+++..+ ..+.|+.+++....  
T Consensus       455 P~glavD~~~g~LY~-tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~  532 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYW-TDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIY  532 (699)
T ss_dssp             CCCEECCCSSSBCEE-CCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCC
T ss_pred             cceEEEEeeCCcEEE-EeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCee
Confidence            456788766666655 3445668999999876555442   2345789999988777776543 23688888876432  


Q ss_pred             EEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          273 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       273 ~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      .+.......+..++|+|++..|+.+...     .+.|.+++++|.
T Consensus       533 ~l~~~~l~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~  572 (699)
T 1n7d_A          533 SLVTENIQWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGG  572 (699)
T ss_dssp             EESCSSCSSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSS
T ss_pred             EEEeCCCCCccEEEEeccCCEEEEEecC-----CCeEEEEccCCC
Confidence            2211122345569999998877777653     678899998875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.75  Score=48.09  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=69.8

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ...|.++...++|...+   |...+-+..||.+...+..+     ....+.++...++|++.+ |..    +-|..+|..
T Consensus       406 ~~~v~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~----~Gl~~~~~~  477 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF---GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH----AGVFVIDLA  477 (781)
T ss_dssp             CSBEEEEEECTTSCEEE---EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET----TEEEEEESS
T ss_pred             CcceEEEEECCCCCEEE---EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC----CceEEEeCC
Confidence            35788999888887665   44445788888876555544     245688888888887554 442    359999988


Q ss_pred             CCEEEEEe--e-----CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          270 DGKQLGTT--R-----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       270 ~~~~i~~~--~-----~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      +++.....  .     ...+..+...++|+..+ |+.      ++++..|+..+.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~------~~Gl~~~~~~~~  525 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF------GGGVGIYTPDMQ  525 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES------SSCEEEECTTCC
T ss_pred             CCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc------CCCEEEEeCCCC
Confidence            76432222  1     12455688888888544 444      466666765443

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.61  E-value=0.27  Score=45.45  Aligned_cols=121  Identities=14%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             eEEEE---CCCCCeEEEEEEe--cccccCceeecceeEEEEeeC----CcceeeeecC------------CCCCeEEEEE
Q 013871          145 VQLNW---NRGSTGLLAVAQS--DVDKTNQSYYGESKLNYLTTD----GTHEGLVPLR------------KEGPVHDVQW  203 (434)
Q Consensus       145 ~~~~w---s~~G~~l~~~~~~--~~d~~~~~~~g~~~l~~l~~~----~~~~~~v~l~------------~~~~i~~v~w  203 (434)
                      ..+.|   .++|. |+++...  ..+..+..+.|...|+.++..    +.....+.|.            ..+...+++.
T Consensus        66 sGl~~~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           66 SGLSLLTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEESSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eEEEEeccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            57889   57754 4443332  223334444455667777766    4333333332            1235789999


Q ss_pred             CcCCCEEEEEEccCC-CeEEEEecccceeEEe--C------CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          204 SYSGSEFAVVYGFMP-ASATIFNKKCRPILEL--G------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       204 spdg~~~av~~g~~~-~~v~l~d~~~~~~~~~--~------~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .++|+.++.  +... +.|..++..+..+..+  .      ....|-|+++|+|+.|++...   .|.|.-+|+.+.
T Consensus       145 D~~GnaYVt--~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~p  216 (334)
T 2p9w_A          145 DRDGNSYVA--FALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKP  216 (334)
T ss_dssp             CTTSCEEEE--EEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSS
T ss_pred             CCCCCEEEe--CCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCC
Confidence            999998884  4445 7888888876543322  1      122568999999999988863   579999998854

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.58  E-value=0.92  Score=47.49  Aligned_cols=265  Identities=10%  Similarity=0.072  Sum_probs=141.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |.+|.+.++|+..+. .     .++.|..|+..+++........  ....+.++...+++.+.+...++-|.+|+.....
T Consensus       175 i~~i~~d~~g~lwig-t-----~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~  246 (795)
T 4a2l_A          175 IASTLYRQGDQIYIG-T-----STDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVATEGAGLFLINPKTKE  246 (795)
T ss_dssp             CEEEEEEETTEEEEE-E-----SSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTE
T ss_pred             eEEEEECCCCCEEEE-E-----CCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCe
Confidence            567778888876663 2     2346889998777653321111  1134446666677877776555568888875522


Q ss_pred             Cceeee--------eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee--------eccccee
Q 013871           82 KGILYR--------LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS--------FFRCSTV  145 (434)
Q Consensus        82 ~~~~~~--------~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~--------~~~~~~~  145 (434)
                      . ....        +....|.++...+++.-.++.    .    .-+.+|+...   . ......        .....+.
T Consensus       247 ~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~----~Gl~~~~~~~---~-~~~~~~~~~~~~~~l~~~~i~  313 (795)
T 4a2l_A          247 I-KNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT----F----NDLNIYHEGT---D-SFASYSSNPVENGSLSQRSVR  313 (795)
T ss_dssp             E-EEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE----S----SCEEEEETTT---T-EEEEECCCTTSTTSCSSSCEE
T ss_pred             E-EEeecCCCCccccCCCeEEEEEEcCCCCEEEEe----C----ChhheEcCCC---C-eEEEEecCCCCCCCCCCCcEE
Confidence            1 1111        112346676666653322221    1    1245555433   1 111110        1112334


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecc--eeEEEEeeCCcceeeeecC------CCCCeEEEEECcCCCEEEEEEccC
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGE--SKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~--~~l~~l~~~~~~~~~v~l~------~~~~i~~v~wspdg~~~av~~g~~  217 (434)
                      ++...++|.               .|.|.  .+|+.++.....-......      ....|.++...++|...+   |..
T Consensus       314 ~i~~D~~g~---------------lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWi---Gt~  375 (795)
T 4a2l_A          314 SIFMDSQGG---------------MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWI---GTN  375 (795)
T ss_dssp             EEEECTTSC---------------EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEE---EES
T ss_pred             EEEEeCCcC---------------EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEE---EEC
Confidence            444445544               33222  1345443322111111100      135689999988887655   555


Q ss_pred             CCeEEEEecccceeEEe-----------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee------CC
Q 013871          218 PASATIFNKKCRPILEL-----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR------AE  280 (434)
Q Consensus       218 ~~~v~l~d~~~~~~~~~-----------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~------~~  280 (434)
                      .+-+..||.+......+           ....+.+++..++|++|.+|..+   +-|.++|.++++......      ..
T Consensus       376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~---~Gl~~~d~~~~~~~~~~~~~~~l~~~  452 (795)
T 4a2l_A          376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA---GGLSILHRNSGQVENFNQRNSQLVNE  452 (795)
T ss_dssp             SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT---TEEEEEETTTCCEEEECTTTSCCSCS
T ss_pred             CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc---CceeEEeCCCCcEEEeecCCCCcCCC
Confidence            66788888865544333           23567788888999855566643   469999988775433221      23


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .+..+...++|+..+ |+       .+++.+|+...
T Consensus       453 ~v~~i~~d~~g~lwi-gt-------~~Gl~~~~~~~  480 (795)
T 4a2l_A          453 NVYAILPDGEGNLWL-GT-------LSALVRFNPEQ  480 (795)
T ss_dssp             CEEEEEECSSSCEEE-EE-------SSCEEEEETTT
T ss_pred             eeEEEEECCCCCEEE-Ee-------cCceeEEeCCC
Confidence            455678888887544 33       34566666543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.55  E-value=0.00077  Score=64.35  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEeCC--c-Ce-eEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELGS--G-PY-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~~~--~-~~-~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ++.+..+.+++..++  .+..++.+..||.+ ++.+..+..  . .+ .+..++ ++..|++++   .+|.|+.||.+++
T Consensus        39 ~~~s~p~~~~g~~~v--~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~---~dg~v~a~D~~tG  112 (369)
T 2hz6_A           39 PVLQVPTHVEEPAFL--PDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK---KQDIWYVIDLLTG  112 (369)
T ss_dssp             CSCCCC-----CCEE--ECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE---EEEEEEEECCC--
T ss_pred             CceecceEcCCCEEE--EeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe---CCCEEEEEECCCC
Confidence            333344445665555  46778999999985 444333321  1 11 111111 344555555   4469999999999


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceee
Q 013871          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF  320 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~  320 (434)
                      +.+..+..+.  ...++|++..|++++.      |+.|+.||. +|+++.
T Consensus       113 ~~~w~~~~~~--~~~~~p~~~~v~~~~~------dg~v~a~d~~tG~~~W  154 (369)
T 2hz6_A          113 EKQQTLSSAF--ADSLSPSTSLLYLGRT------EYTITMYDTKTRELRW  154 (369)
T ss_dssp             ----------------------EEEEEE------EEEEECCCSSSSSCCC
T ss_pred             cEEEEecCCC--cccccccCCEEEEEec------CCEEEEEECCCCCEEE
Confidence            9888776553  2456789999999988      888888887 565443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.49  E-value=0.84  Score=45.91  Aligned_cols=59  Identities=19%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|..||..+++.+..+.... .........+..+++++.      |+.|++||. +|+++.+...
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~------dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL------DGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC------CCeEEEEECCCCCEEEEEeC
Confidence            4799999999998887775432 112222334566777777      999999997 6777765543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.47  E-value=0.29  Score=50.23  Aligned_cols=69  Identities=14%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCC-CeeeecCCCcEEEEec--C-----CeEEEE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTW-PSIRFSSDEAVACRMA--T-----NEIQFF   75 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~-~~~~~S~d~~~la~~~--~-----~~i~v~   75 (434)
                      ++++.++|+.+++.+.    .+..+.+||..+++-... ..  .....+ .+....+|+++++.++  +     +.+.+|
T Consensus       247 ~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~-~~--~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y  319 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPG-PD--MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY  319 (656)
T ss_dssp             EEEECTTSCEEEECSS----STTCEEEEEGGGTEEEEC-CC--CSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred             cccCCCCCCEEEeCCC----CCCceEEecCcCCceeEC-CC--CCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence            3677899998888762    234799999988754322 11  111222 2455667999888875  2     579999


Q ss_pred             eCCC
Q 013871           76 DTTD   79 (434)
Q Consensus        76 ~~~~   79 (434)
                      |...
T Consensus       320 d~~t  323 (656)
T 1k3i_A          320 SPSS  323 (656)
T ss_dssp             ETTT
T ss_pred             CCCC
Confidence            9865

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.39  E-value=1  Score=45.84  Aligned_cols=221  Identities=7%  Similarity=-0.006  Sum_probs=119.0

Q ss_pred             CCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCC
Q 013871           25 EKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAP  102 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~  102 (434)
                      ...|+..++.+......+.....  .....++|.+++..+...  .++.|+.+++..................+++.+.+
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~--~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~   91 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGV--KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG   91 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred             CCcEEEEECCCCCcceEEEcCCC--CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence            46788889876553333222211  233378999876655544  45799999886533212222122345677777653


Q ss_pred             CCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee
Q 013871          103 GSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT  182 (434)
Q Consensus       103 ~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~  182 (434)
                      +. | +|...   ..+.|.+.++.... ...+..  ..-..-..+...|....|.+ ++.  ..       ...|+.++.
T Consensus        92 ~~-L-Y~tD~---~~~~I~v~~~dG~~-~~~l~~--~~l~~P~~iavdp~~G~lY~-tD~--g~-------~~~I~r~~~  153 (628)
T 4a0p_A           92 KN-L-YWADT---GTNRIEVSKLDGQH-RQVLVW--KDLDSPRALALDPAEGFMYW-TEW--GG-------KPKIDRAAM  153 (628)
T ss_dssp             TE-E-EEEET---TTTEEEEEETTSTT-CEEEEC--SSCCCEEEEEEETTTTEEEE-EEC--SS-------SCEEEEEET
T ss_pred             CE-E-EEEEC---CCCEEEEEecCCCc-EEEEEe--CCCCCcccEEEccCCCeEEE-eCC--CC-------CCEEEEEeC
Confidence            32 2 23221   23577777775411 111111  11123356777775555443 221  11       224677776


Q ss_pred             CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCC
Q 013871          183 DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       183 ~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~  260 (434)
                      +|.....+ +..-.....++++++++.+.++ ....+.|..+|+.+.....+  ....-..|++.  +..|.++...+  
T Consensus       154 dG~~~~~l-~~~~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~--  227 (628)
T 4a0p_A          154 DGSERTTL-VPNVGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSR--  227 (628)
T ss_dssp             TSCSCEEE-ECSCSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTT--
T ss_pred             CCCceEEE-ECCCCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCC--
Confidence            66532222 2333456789999998888874 45567999999875433222  11222345553  34666666543  


Q ss_pred             CeEEEEEccCC
Q 013871          261 GDMAFWDYVDG  271 (434)
Q Consensus       261 g~i~iwd~~~~  271 (434)
                      +.|...|..++
T Consensus       228 ~~I~~~dk~tg  238 (628)
T 4a0p_A          228 RSIERANKTSG  238 (628)
T ss_dssp             TEEEEEETTTC
T ss_pred             CEEEEEECCCC
Confidence            68888887655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.35  E-value=1.1  Score=45.64  Aligned_cols=228  Identities=9%  Similarity=-0.004  Sum_probs=124.1

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCceeeee-ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013871           61 EAVACRMATNEIQFFDTTDFPKGILYRL-RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      +.+|.+...++|+..++..........+ .+.....++|++..+ .| +|...   ..+.|..+++..   .........
T Consensus         6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~-~l-ywtD~---~~~~I~r~~~~g---~~~~~v~~~   77 (628)
T 4a0p_A            6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN-RI-YWTDI---SLKTISRAFMNG---SALEHVVEF   77 (628)
T ss_dssp             CCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT-EE-EEEET---TTTEEEEEETTS---CSCEEEECS
T ss_pred             CcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC-EE-EEEEC---CCCeEEEEECCC---CCcEEEEeC
Confidence            4467777778999999876432111111 234577889998733 33 33322   224666666543   111111111


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      .......++....+..|.+. +.          +...|..++..|.....+....-..-.++++.|....+.+.--....
T Consensus        78 g~~~P~GlAvD~~~~~LY~t-D~----------~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~  146 (628)
T 4a0p_A           78 GLDYPEGMAVDWLGKNLYWA-DT----------GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKP  146 (628)
T ss_dssp             SCSCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCCCcceEEEEeCCCEEEEE-EC----------CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCC
Confidence            10122344444445555432 11          11245666666654332221223445899999976666653322356


Q ss_pred             eEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEE
Q 013871          220 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFM  295 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~  295 (434)
                      +|...++.+.....+  .-..-+.|+++++++.|.++..++  +.|+.+|++..  +.+.. ....+..++...  .+|.
T Consensus       147 ~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~--~~I~~~d~dG~~~~v~~~-~l~~P~glav~~--~~ly  221 (628)
T 4a0p_A          147 KIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT--NLIESSNMLGLNREVIAD-DLPHPFGLTQYQ--DYIY  221 (628)
T ss_dssp             EEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEEE-CCSCEEEEEEET--TEEE
T ss_pred             EEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCC--CEEEEEcCCCCceEEeec-cCCCceEEEEEC--CEEE
Confidence            888888876554433  334568899999999888887654  78999998754  22221 222444466543  3555


Q ss_pred             EEEcCCceeeCCcEEEEee-cCc
Q 013871          296 TATTAPRLQIDNGIKIFHH-NGS  317 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~~-~g~  317 (434)
                      .+...     .+.|...|. +|+
T Consensus       222 ~tD~~-----~~~I~~~dk~tg~  239 (628)
T 4a0p_A          222 WTDWS-----RRSIERANKTSGQ  239 (628)
T ss_dssp             EEETT-----TTEEEEEETTTCC
T ss_pred             EecCC-----CCEEEEEECCCCC
Confidence            55432     566666663 454

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.34  E-value=1.1  Score=45.85  Aligned_cols=76  Identities=12%  Similarity=0.173  Sum_probs=50.3

Q ss_pred             CeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013871          219 ASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~  293 (434)
                      +.+.-||+++.. +-+. ...+.....+...|.++++++   .+|.|+.||.++++.+..+.... +  .-+.+..+|+.
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~---~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC---CcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            578889986443 3333 223334344555778888876   66899999999999998886542 1  22667788884


Q ss_pred             EEEE
Q 013871          294 FMTA  297 (434)
Q Consensus       294 l~ta  297 (434)
                      .++.
T Consensus       515 yva~  518 (668)
T 1kv9_A          515 YVAI  518 (668)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.29  E-value=0.85  Score=43.79  Aligned_cols=232  Identities=9%  Similarity=0.131  Sum_probs=139.7

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|.|.|+.+........+.   ..+.-++|. .+.||+-.      ...++|+++..   .+.+....+ ..+++-.+|
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~-~~iiALra------g~~lQiFnle~---K~klks~~~-~e~VvfWkW  113 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALKA------GKTLQIFNIEM---KSKMKAHTM-TDDVTFWKW  113 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECC---CSEEEECSS-SSCEEEEE------TTEEEEEETTT---TEEEEEEEC-SSCCCEEEE
T ss_pred             CeEEEEECCCCCcceecccc---cceeeeCCC-CcEEEEec------CCeEEEEchHH---hhhhcceec-CCCceEEEe
Confidence            48999999886653222222   335567887 57777642      35899999988   666766655 346777788


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-----CCCCeEEEEECcCCCEEEEEEc-----cCCC
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVYG-----FMPA  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~v~wspdg~~~av~~g-----~~~~  219 (434)
                      -.+. .|.+++             ++.+|.+++.+.......++     ....|-...-+++.++++++.=     ...|
T Consensus       114 is~~-~l~lVT-------------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G  179 (494)
T 1bpo_A          114 ISLN-TVALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  179 (494)
T ss_dssp             EETT-EEEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred             cCCC-eEEEEc-------------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence            6553 344432             22467777665322211111     1467788889999999987521     1345


Q ss_pred             eEEEEecccceeEEeCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC---------EEEEEeeC-----C
Q 013871          220 SATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG---------KQLGTTRA-----E  280 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-----~~l~~~~~~~~~g~i~iwd~~~~---------~~i~~~~~-----~  280 (434)
                      .+.+|..+.+...-+......-..+-.+|     .+++.+......+++.|.++...         +.+..+-.     .
T Consensus       180 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D  259 (494)
T 1bpo_A          180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (494)
T ss_dssp             EEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC
T ss_pred             eEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC
Confidence            78899886544333322222222333333     25666655433478999988532         22221111     1


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec--ccceeeEEEcC
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPV  335 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~--~~~~~~~w~p~  335 (434)
                      -++.+..|+.-..+..-+.      -|-+.++|+ +|.+++....  +.++-.+-...
T Consensus       260 FPvamqvs~kygviyviTK------~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~  311 (494)
T 1bpo_A          260 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  311 (494)
T ss_dssp             CEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             ceeEEEecccCCEEEEEec------CceEEEEecccceeeeeecccCCceEEecccCC
Confidence            3456888888888888888      789999999 6777776644  34554444433

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.28  E-value=0.86  Score=43.75  Aligned_cols=267  Identities=15%  Similarity=0.145  Sum_probs=148.8

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+.  ..++.+|.|-|+.++..+.+..-..   +   +.--.|..+.+|.-.+.+++|||+....+.....+ .
T Consensus        35 DkyicVrE~--~~~~~~vvIiDl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~  105 (494)
T 1bpo_A           35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  105 (494)
T ss_dssp             TTEEEEEEC--CTTCCEEEEEETTSTTSCEEEECCC---S---EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred             CceEEEEec--CCCCCeEEEEECCCCCcceeccccc---c---eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-C
Confidence            467766553  2234589999998876554433321   1   33457778888877788999999988554332222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee----ecccceeEEEECCCCCeEEEEEEecccc
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~----~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-..  ..+++...      ..|.-|++...  ..++....    +....+....-+++.++++++.-...+.
T Consensus       106 e~VvfWkWis~--~~l~lVT~------taVyHWsi~~~--s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A          106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             SCCCEEEEEET--TEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             CCceEEEecCC--CeEEEEcC------CeeEEecccCC--CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence            45666666543  45555432      35677777542  33332222    2245667778899999988775543333


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEcc-CCCeEEEEecccc----e-----
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYGF-MPASATIFNKKCR----P-----  230 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~-wspdg-----~~~av~~g~-~~~~v~l~d~~~~----~-----  230 (434)
                         ...|...||..  .......+    +|..-+++ +-.+|     ..|+++... ..+++.|.++...    +     
T Consensus       176 ---~v~G~mQLYS~--er~~sQ~i----eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk  246 (494)
T 1bpo_A          176 ---RVVGAMQLYSV--DRKVSQPI----EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  246 (494)
T ss_dssp             ---EEEEEEEEEES--TTCCEEEE----CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCE
T ss_pred             ---cccceEEEeec--cccccchh----eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccce
Confidence               22365555544  23222221    33332221 22222     234443222 1258888887321    1     


Q ss_pred             eEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013871          231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 ~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      ..++  .    .+.-.++..|+.-..+.+-.   .-|.|++||++++.++..-.        .|+|--+ +++...    
T Consensus       247 ~vdv~fppe~~~DFPvamqvs~kygviyviT---K~G~i~lyDleTgt~i~~nr--------Is~~~iF-~t~~~~----  310 (494)
T 1bpo_A          247 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR--------ISGETIF-VTAPHE----  310 (494)
T ss_dssp             EEECCCCTTSTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEE--------CCSSCEE-EEEEET----
T ss_pred             eeeeeCCcccccCceeEEEecccCCEEEEEe---cCceEEEEecccceeeeeec--------ccCCceE-EecccC----
Confidence            1121  1    22334677888777777776   55799999999998877654        3444333 333221    


Q ss_pred             eCCcEEEEeecCceeee
Q 013871          305 IDNGIKIFHHNGSLFFK  321 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~~  321 (434)
                      -.++|..-+-.|+.+..
T Consensus       311 ~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          311 ATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             TTTEEEEEETTCEEEEE
T ss_pred             CCCcEEEEccCceEEEE
Confidence            04566666666665544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.27  E-value=0.069  Score=50.35  Aligned_cols=142  Identities=11%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEe-----CCcCeeEEEECCC---CCeEEEEecC-CCC----Ce
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPK---GKFLCLAGFG-NLP----GD  262 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~-----~~~~~~~i~~SP~---g~~l~~~~~~-~~~----g~  262 (434)
                      .-..++|.|+|+.++   ...++.|.++|..+. .+..+     .....+.|+++|+   +..|.++... ..+    ..
T Consensus        30 ~P~~ia~~pdG~l~V---~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV---TERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             CEEEEEEEETTEEEE---EETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCeEEEEcCCCeEEE---EeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            457899999997444   344589999986544 22222     2345688999998   5544444321 011    36


Q ss_pred             EEEEEccCC-------EEE-EEee---CCCceEEEECCCCCEEEEEEcCCce-------eeCCcEEEEeecCc-------
Q 013871          263 MAFWDYVDG-------KQL-GTTR---AECSVTSEWSPDGRYFMTATTAPRL-------QIDNGIKIFHHNGS-------  317 (434)
Q Consensus       263 i~iwd~~~~-------~~i-~~~~---~~~~~~~~wspdg~~l~tas~~prl-------~~D~~i~iw~~~g~-------  317 (434)
                      |..|+....       +.+ ..+.   .|....+.|.|||..+++.+..-..       ...+.|.-.+.+|+       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777876643       222 2222   2455569999999866664321000       01234555555665       


Q ss_pred             ---eeeeeecccceeeEEEcCCCCCCC
Q 013871          318 ---LFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       318 ---~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                         .++..-...-+.++|.|+.-.||.
T Consensus       187 ~~~~i~a~G~rnp~Gla~d~~~g~l~v  213 (354)
T 3a9g_A          187 PNSPIWSYGHRNPQGIDWHRASGVMVA  213 (354)
T ss_dssp             TTCCEEEECCSCCCEEEECTTTCCEEE
T ss_pred             CCCcEEEEccCCcceEEEeCCCCCEEE
Confidence               233333344567888885444544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.25  E-value=1  Score=44.27  Aligned_cols=146  Identities=8%  Similarity=-0.099  Sum_probs=73.1

Q ss_pred             ceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc-CCCCCCeeee-------cCCCcEEEEecC-C--
Q 013871            3 LLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM-TKTTWPSIRF-------SSDEAVACRMAT-N--   70 (434)
Q Consensus         3 ~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~-~~~~~~~~~~-------S~d~~~la~~~~-~--   70 (434)
                      ..|+|+| ++..|..+.+    ..+.|++.|+.++.. ..+..... .......++|       ++++.+|..... +  
T Consensus       142 ~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v-~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          142 GRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRML-SSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             EEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEE-EEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             CEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEE-EEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            4689999 4555554442    235688889877654 44332211 0012336889       999985555532 2  


Q ss_pred             -----eEEEEeCCC-CCCce----eeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC-------CCCCCCc
Q 013871           71 -----EIQFFDTTD-FPKGI----LYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG-------KDLQSQP  133 (434)
Q Consensus        71 -----~i~v~~~~~-~~~~~----~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~-------~~~~~~~  133 (434)
                           .|.+++... .....    ...........++++|+.+.++.+ .    ...+.|..+++.       +.....+
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d----~~~g~V~r~d~~~~~~~~~tg~~~tp  291 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-S----YEKGQVFRLDLVDYFKTIKNGGSWDP  291 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-E----TTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-E----CCCCEEEEEecccccccccCceeecc
Confidence                 266665332 11100    011123345677888864443222 1    123467777775       3110000


Q ss_pred             --------eeee-eec-ccceeEEEECCCCCeEEE
Q 013871          134 --------LARR-SFF-RCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus       134 --------i~~~-~~~-~~~~~~~~ws~~G~~l~~  158 (434)
                              ...+ ... ......++|+|+|+.|.+
T Consensus       292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv  326 (496)
T 3kya_A          292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF  326 (496)
T ss_dssp             BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred             cccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence                    1111 111 122457999999996554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.21  E-value=1.2  Score=44.94  Aligned_cols=77  Identities=12%  Similarity=0.062  Sum_probs=45.6

Q ss_pred             CeEEEEeccc-ceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCCE
Q 013871          219 ASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGRY  293 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~~  293 (434)
                      +.+.-||++. +.+-+.. ..+...-...-.|.++++++   .+|.|+.||.++++++..++... +  .-+.|..||+.
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt---~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGT---LDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEEC---CCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            4677777753 3333331 11221111222466666666   67899999999999998886542 1  22677788875


Q ss_pred             EEEEE
Q 013871          294 FMTAT  298 (434)
Q Consensus       294 l~tas  298 (434)
                      ++...
T Consensus       530 yv~~~  534 (599)
T 1w6s_A          530 YVAIY  534 (599)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.20  E-value=0.21  Score=47.02  Aligned_cols=140  Identities=11%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec----CCCCCeEEEEECcC---CCEEEEEEcc
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL----RKEGPVHDVQWSYS---GSEFAVVYGF  216 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l----~~~~~i~~v~wspd---g~~~av~~g~  216 (434)
                      -..|.|.|+|. |++ +.  .  .+       .|+.++..+. +....+    ...+....++++|+   +..|.+.+..
T Consensus        31 P~~ia~~pdG~-l~V-~e--~--~g-------~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           31 PWSIAPLGGGR-YLV-TE--R--PG-------RLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEEEETTE-EEE-EE--T--TT-------EEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred             CeEEEEcCCCe-EEE-Ee--C--CC-------EEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence            34788999997 333 22  1  12       2555543333 222111    12456889999998   6666664432


Q ss_pred             --CC----CeEEEEecccc--------eeEE-eC---CcCeeEEEECCCCCeEEEEecC----------CCCCeEEEEEc
Q 013871          217 --MP----ASATIFNKKCR--------PILE-LG---SGPYNTVRWNPKGKFLCLAGFG----------NLPGDMAFWDY  268 (434)
Q Consensus       217 --~~----~~v~l~d~~~~--------~~~~-~~---~~~~~~i~~SP~g~~l~~~~~~----------~~~g~i~iwd~  268 (434)
                        .+    ..|..|+....        .+.. +.   ...-+.|.|.|||.++++.+..          ...|.|.-+|.
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~  176 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE  176 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence              12    46777776432        1222 22   1234679999999866654321          12467777776


Q ss_pred             cCC---------EEEEEeeCCCceEEEECC-CCCEEEEE
Q 013871          269 VDG---------KQLGTTRAECSVTSEWSP-DGRYFMTA  297 (434)
Q Consensus       269 ~~~---------~~i~~~~~~~~~~~~wsp-dg~~l~ta  297 (434)
                      +..         ..+......+...++|+| +|+.+++-
T Consensus       177 dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          177 EGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             TSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEe
Confidence            532         123333334667799999 67655543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.19  E-value=0.78  Score=46.63  Aligned_cols=157  Identities=8%  Similarity=-0.023  Sum_probs=98.2

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                      ...+.|++.+..|.+.     |...      ..|+.+...+... ..+....-.....+++.+.++.+.+ +....+.|.
T Consensus        42 ~~~ld~~~~~~~ly~s-----D~~~------~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~-~d~~~~~I~  109 (619)
T 3s94_A           42 AAAVDFVFSHGLIYWS-----DVSE------EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYW-TDSETNRIE  109 (619)
T ss_dssp             EEEEEEETTTTEEEEE-----ETTT------TEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEE-EETTTTEEE
T ss_pred             eEEEEEEeCCCEEEEE-----ECCC------CeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEE-EeCCCCEEE
Confidence            4567788877766542     1111      1355555555421 1111111246788999997777776 355667999


Q ss_pred             EEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEE
Q 013871          223 IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       223 l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.++++.....+   .-..-+.|++.|.+.+|..+..+ ..+.|+..+++..  +.+.......+..+++++++..|..+
T Consensus       110 v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~a  188 (619)
T 3s94_A          110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWA  188 (619)
T ss_dssp             EEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence            999987654333   22334689999988878777765 2467888887643  33332233466779999998888888


Q ss_pred             EcCCceeeCCcEEEEeecCce
Q 013871          298 TTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       298 s~~prl~~D~~i~iw~~~g~~  318 (434)
                      ...     .+.|...+++|..
T Consensus       189 D~~-----~~~I~~~~~dG~~  204 (619)
T 3s94_A          189 DAK-----LNFIHKSNLDGTN  204 (619)
T ss_dssp             ETT-----TCCEEEESSSCCE
T ss_pred             eCC-----CCeEEEecCCCCc
Confidence            764     6778888888853

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.90  E-value=0.16  Score=47.79  Aligned_cols=98  Identities=13%  Similarity=0.180  Sum_probs=60.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccc--eeEEe-----CCcCeeEEEECCC---CCeEEEEecCCCC---CeE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL-----GSGPYNTVRWNPK---GKFLCLAGFGNLP---GDM  263 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--~~~~~-----~~~~~~~i~~SP~---g~~l~~~~~~~~~---g~i  263 (434)
                      .-..++|.|+|+.++   ..+.+.|.+++ .+.  .+..+     .....+.|+|+|+   +..|.++.....+   +.|
T Consensus        32 ~P~~ia~~pdG~l~V---~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           32 VPWALAFLPDGGMLI---AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             CEEEEEECTTSCEEE---EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CceEEEEcCCCeEEE---EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            346899999998554   34568999987 332  12222     2345688999998   5655555432111   478


Q ss_pred             EEEEccCC-----EE-EEEee-----CCCceEEEECCCCCEEEEEE
Q 013871          264 AFWDYVDG-----KQ-LGTTR-----AECSVTSEWSPDGRYFMTAT  298 (434)
Q Consensus       264 ~iwd~~~~-----~~-i~~~~-----~~~~~~~~wspdg~~l~tas  298 (434)
                      ..++....     +. +..+.     .|....++|+|||..+++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            88887643     22 22233     13455699999997666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.76  E-value=0.65  Score=42.94  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=73.9

Q ss_pred             eEEEEE---CcCCCEEEEEEc-----------cCCCeEEEEecc----cceeEEeC-----C----------cCeeEEEE
Q 013871          198 VHDVQW---SYSGSEFAVVYG-----------FMPASATIFNKK----CRPILELG-----S----------GPYNTVRW  244 (434)
Q Consensus       198 i~~v~w---spdg~~~av~~g-----------~~~~~v~l~d~~----~~~~~~~~-----~----------~~~~~i~~  244 (434)
                      +..+.|   .|+++.++++..           ..+..+..||+.    ++.+....     .          ...+.++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            478999   688766664321           024678999988    44443321     1          24789999


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe-eCC------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~-~~~------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .++|+..++++++.  +.|..+|.+......-. ...      ...-++++|||..|++...      ++.+..+|+.
T Consensus       145 D~~GnaYVt~s~~~--~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~------~g~L~~fD~~  214 (334)
T 2p9w_A          145 DRDGNSYVAFALGM--PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG------PRALTAFDVS  214 (334)
T ss_dssp             CTTSCEEEEEEESS--CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS------SSSEEEEECS
T ss_pred             CCCCCEEEeCCCCC--CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC------CCeEEEEcCC
Confidence            99999888888661  47887777644222111 111      2446999999999999988      7777777765

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.76  E-value=0.21  Score=46.99  Aligned_cols=141  Identities=10%  Similarity=0.090  Sum_probs=75.1

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee------ecCCCCCeEEEEECcC---CCEEEEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV------PLRKEGPVHDVQWSYS---GSEFAVVY  214 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v------~l~~~~~i~~v~wspd---g~~~av~~  214 (434)
                      -..|.|.|+|++|++. .    ..+       .|+.++..+.....+      .....+....++|+|+   +..|.+.+
T Consensus        20 P~~i~~~pdG~~l~V~-e----~~G-------~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           20 PWALAFLPDNHGMLIT-L----RGG-------ELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEECSTTCCEEEE-E----TTT-------EEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             cEEEEEcCCCCEEEEE-e----CCc-------eEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            3578999999854442 2    122       255555433211111      1112456789999996   56666544


Q ss_pred             ccC------CCeEEEEecccc--------eeEE-eCC-----cCeeEEEECCCCCeEEEEecC----------CCCCeEE
Q 013871          215 GFM------PASATIFNKKCR--------PILE-LGS-----GPYNTVRWNPKGKFLCLAGFG----------NLPGDMA  264 (434)
Q Consensus       215 g~~------~~~v~l~d~~~~--------~~~~-~~~-----~~~~~i~~SP~g~~l~~~~~~----------~~~g~i~  264 (434)
                      ...      ...|..|+....        .+.. +..     ..-+.|.|.|||.++++.+..          ...|.|.
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~  167 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV  167 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence            321      225666655321        1111 111     123579999999755554321          1246788


Q ss_pred             EEEccCC--------------EEEEEeeCCCceEEEECC-CCCEEEE
Q 013871          265 FWDYVDG--------------KQLGTTRAECSVTSEWSP-DGRYFMT  296 (434)
Q Consensus       265 iwd~~~~--------------~~i~~~~~~~~~~~~wsp-dg~~l~t  296 (434)
                      -+|.+..              ..+......+...++|+| +|+.+++
T Consensus       168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          168 RLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred             EECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence            7876532              122223333566799999 5655544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.69  E-value=2.5  Score=44.12  Aligned_cols=109  Identities=14%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEc
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ...|.++...++|...+   |...+-+..||.+...+..+      ....+.++...++|++.+..    ..|-|..||.
T Consensus       494 ~~~i~~i~~d~~g~lWi---gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T----~~Glv~~~d~  566 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWI---GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT----GEGLVCFPSA  566 (781)
T ss_dssp             CSCEEEEEECTTCCEEE---EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE----TTEEEEESCT
T ss_pred             cceeEEEEEcCCCCEEE---EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE----CCCceEEECC
Confidence            35789999998887655   34334578888876655544      24567889999999865543    2244488888


Q ss_pred             cCCEEEEEe--eC---CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          269 VDGKQLGTT--RA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       269 ~~~~~i~~~--~~---~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      ++++...-.  .+   ..+..+..+++|+..++  +      +++|..++.....
T Consensus       567 ~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~--t------~~Gl~~~~~~~~~  613 (781)
T 3v9f_A          567 RNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS--T------NTGISCYITSKKC  613 (781)
T ss_dssp             TTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE--C------SSCEEEEETTTTE
T ss_pred             CCCcEEEccccCCCCCceEEEEEECCCCCEEEE--c------CCceEEEECCCCc
Confidence            766432211  11   23445788888886554  3      4556666665443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.67  E-value=0.52  Score=44.22  Aligned_cols=114  Identities=12%  Similarity=0.110  Sum_probs=70.8

Q ss_pred             CCeEEEEECc--CCC-EEEEE-EccCCCeEEEEecc--cce---eEEeC---CcCeeEEEECCCCCeEEEEec--C----
Q 013871          196 GPVHDVQWSY--SGS-EFAVV-YGFMPASATIFNKK--CRP---ILELG---SGPYNTVRWNPKGKFLCLAGF--G----  257 (434)
Q Consensus       196 ~~i~~v~wsp--dg~-~~av~-~g~~~~~v~l~d~~--~~~---~~~~~---~~~~~~i~~SP~g~~l~~~~~--~----  257 (434)
                      ...+.+.+.+  +|. +|.|+ .+.....+.+|++.  +..   +.++.   -...|.+...++|++.++...  .    
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            4667777766  454 34333 33234578887663  222   22332   234689999999998876531  1    


Q ss_pred             --------CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          258 --------NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       258 --------~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                              ...|.|+.+|..+-+.+. -.-.....++|||||++|+.+.+.     .+.|..|+++
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~~~~~~~-~~l~~pNGia~spDg~~lYvadt~-----~~~I~~~~~~  251 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-----AHKIHVYEKH  251 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTTCCEEEE-EEESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEEC
T ss_pred             ccchhhccCCccEEEEEECCeEEEee-cCCcccCcceECCCCCEEEEEeCC-----CCeEEEEEEC
Confidence                    124678777764333221 111345569999999999998874     6788999885

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.33  E-value=2.8  Score=42.47  Aligned_cols=136  Identities=8%  Similarity=0.010  Sum_probs=86.4

Q ss_pred             eEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEE
Q 013871          176 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLC  252 (434)
Q Consensus       176 ~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~  252 (434)
                      .|+.+...+.....+....-+....+++.+.+..+.+ +....+.|.+.++.+.....+   .-..-+.|++.|...+|.
T Consensus       372 ~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~-tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly  450 (619)
T 3s94_A          372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW-TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMY  450 (619)
T ss_dssp             EEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE-EETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEE
T ss_pred             eEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEE-EeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEE
Confidence            3566666554222222111245568888876777766 345567999999876654443   223457899999866777


Q ss_pred             EEecCCCCCeEEEEEccCC--EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCce
Q 013871          253 LAGFGNLPGDMAFWDYVDG--KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~--~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      .+..+. .+.|+..+++..  +.+..-.-..+..++.++++..|..+...     .+.|...+++|..
T Consensus       451 ~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~-----~~~I~~~~~dG~~  512 (619)
T 3s94_A          451 WTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK-----TDKIEVMNTDGTG  512 (619)
T ss_dssp             EEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCC
T ss_pred             EecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC-----CCEEEEEecCCCc
Confidence            776542 467888877633  22322122366679999998888888763     4668888888764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.25  E-value=1.1  Score=41.92  Aligned_cols=142  Identities=10%  Similarity=0.070  Sum_probs=76.9

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee-ec-----CCCCCeEEEEECcC---CCEEEEEE
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL-----RKEGPVHDVQWSYS---GSEFAVVY  214 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v-~l-----~~~~~i~~v~wspd---g~~~av~~  214 (434)
                      -..|.|.|+|.. ++ +..   ..+       .|+.++..+.....+ .+     ...+....++++|+   +..|.+.+
T Consensus        34 P~~ia~~pdG~l-lV-ter---~~G-------~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           34 PWGLAPLPGGDL-LV-SSR---DEA-------TITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECTTSCE-EE-EET---TTC-------EEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             ceEEEEcCCCcE-EE-EEe---cCC-------EEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            357899999974 33 211   122       255554332211111 11     22567899999995   45555543


Q ss_pred             c-cCCCeEEEEeccc-----------ceeE-EeC---CcCeeEEEECCCCCeEEEEec-C---------CCCCeEEEEEc
Q 013871          215 G-FMPASATIFNKKC-----------RPIL-ELG---SGPYNTVRWNPKGKFLCLAGF-G---------NLPGDMAFWDY  268 (434)
Q Consensus       215 g-~~~~~v~l~d~~~-----------~~~~-~~~---~~~~~~i~~SP~g~~l~~~~~-~---------~~~g~i~iwd~  268 (434)
                      . .....|.-|....           +.+. .+.   ...-..|.|.|||.+.++.|. +         ...|.|.-.+.
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~  181 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTP  181 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECT
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeC
Confidence            3 2334666665432           1122 222   123356999999986666442 1         13467776666


Q ss_pred             cCC---------EEEEEeeCCCceEEEECCCCCEEEEE
Q 013871          269 VDG---------KQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       269 ~~~---------~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +..         ..+...-..+...++|+|+|+.+++=
T Consensus       182 dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d  219 (347)
T 3das_A          182 DGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASE  219 (347)
T ss_dssp             TSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEE
T ss_pred             CCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEe
Confidence            522         12333333366779999998866553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.10  E-value=1.2  Score=43.29  Aligned_cols=104  Identities=10%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             CCCeEEEEECcC---CCEEEEEEccC-----------CCeEEEEeccc--------ceeEE-eC---CcCeeEEEECCCC
Q 013871          195 EGPVHDVQWSYS---GSEFAVVYGFM-----------PASATIFNKKC--------RPILE-LG---SGPYNTVRWNPKG  248 (434)
Q Consensus       195 ~~~i~~v~wspd---g~~~av~~g~~-----------~~~v~l~d~~~--------~~~~~-~~---~~~~~~i~~SP~g  248 (434)
                      ++.+..|+|+||   +..|.+.+...           ...|..|+...        +.+.+ +.   ....+.|.|.|||
T Consensus        76 ~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG  155 (454)
T 1cru_A           76 QNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ  155 (454)
T ss_dssp             SCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS
T ss_pred             CCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC
Confidence            466789999996   66776655320           12555555421        12222 22   2345789999999


Q ss_pred             CeEEEEecC-C----------------------------CCCeEEEEEccCC------------EEEEEeeCCCceEEEE
Q 013871          249 KFLCLAGFG-N----------------------------LPGDMAFWDYVDG------------KQLGTTRAECSVTSEW  287 (434)
Q Consensus       249 ~~l~~~~~~-~----------------------------~~g~i~iwd~~~~------------~~i~~~~~~~~~~~~w  287 (434)
                      .+.++.|.. +                            ..|.|.-+|.+..            ..+...-..++..++|
T Consensus       156 ~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~  235 (454)
T 1cru_A          156 KIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAF  235 (454)
T ss_dssp             CEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEE
T ss_pred             eEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEE
Confidence            966654421 1                            1366666665432            1223333336666999


Q ss_pred             CCCCCEEEEEE
Q 013871          288 SPDGRYFMTAT  298 (434)
Q Consensus       288 spdg~~l~tas  298 (434)
                      +|+|+.+++-.
T Consensus       236 dp~G~L~~~d~  246 (454)
T 1cru_A          236 TPNGKLLQSEQ  246 (454)
T ss_dssp             CTTSCEEEEEE
T ss_pred             CCCCCEEEEec
Confidence            99988666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.95  E-value=1.2  Score=41.65  Aligned_cols=137  Identities=10%  Similarity=0.073  Sum_probs=76.1

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccc---eeEEe------CCcCeeEEEECCC---CCeEEEE-ecCCCCCeE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL------GSGPYNTVRWNPK---GKFLCLA-GFGNLPGDM  263 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~---~~~~~------~~~~~~~i~~SP~---g~~l~~~-~~~~~~g~i  263 (434)
                      .-..++|.|||+.|+  +....++|.+++....   .+..+      ..+....|+++|+   ..+|.+. +.. ....|
T Consensus        33 ~P~~ia~~pdG~llV--ter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v  109 (347)
T 3das_A           33 SPWGLAPLPGGDLLV--SSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRI  109 (347)
T ss_dssp             SEEEEEECTTSCEEE--EETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEE
T ss_pred             CceEEEEcCCCcEEE--EEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEE
Confidence            457899999998666  3333789999976422   22222      2455688999995   3444332 211 22356


Q ss_pred             EEEEccC----------CEEEE-Ee---eCCCceEEEECCCCCEEEEEEcCCc------e-eeCCcEEEEeecCc-----
Q 013871          264 AFWDYVD----------GKQLG-TT---RAECSVTSEWSPDGRYFMTATTAPR------L-QIDNGIKIFHHNGS-----  317 (434)
Q Consensus       264 ~iwd~~~----------~~~i~-~~---~~~~~~~~~wspdg~~l~tas~~pr------l-~~D~~i~iw~~~g~-----  317 (434)
                      .-|....          .+.+. .+   ..|....+.|.|||..+++.+..-.      + ..-+.|.-.+.+|.     
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n  189 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN  189 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence            6665543          23332 23   2355566999999987776543110      0 01234444455555     


Q ss_pred             -----eeeeeecccceeeEEEcCC
Q 013871          318 -----LFFKKMFDKLFQAEWKPVS  336 (434)
Q Consensus       318 -----~~~~~~~~~~~~~~w~p~~  336 (434)
                           .++..-....+.++|+|.+
T Consensus       190 Pf~~~~i~a~G~RNp~Gla~dp~G  213 (347)
T 3das_A          190 PFPGSPVYSYGHRNVQGLAWDDKQ  213 (347)
T ss_dssp             SSTTCCEEEBCCSBCCEEEECTTC
T ss_pred             CCCCCeEEeeCCCCcceEEECCCC
Confidence                 2333333346778888854

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.93  E-value=2.4  Score=39.50  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             CCeEEEEE--CcC-CCEEEEEEccCCCeEEEEecc--------cceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          196 GPVHDVQW--SYS-GSEFAVVYGFMPASATIFNKK--------CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       196 ~~i~~v~w--spd-g~~~av~~g~~~~~v~l~d~~--------~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      ..++.++.  +|. ++.++++.+ .++.+..|++.        .+.+.+|. .+....|...+....|.++--+   -.|
T Consensus       128 ~~pyGlcly~~~~~g~~yafV~~-k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd---~GI  203 (355)
T 3amr_A          128 NEVYGFTLYHSQKTGKYYAMVTG-KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEED---EAI  203 (355)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT---TEE
T ss_pred             CCeeEEEEEecCCCCcEEEEEEC-CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEeccc---ceE
Confidence            45667888  774 555666544 45888888762        24455663 4567788888988888888743   358


Q ss_pred             EEEEcc-----CCEEEEEeeCC----CceEEEE--CCCCC-EEEEEEcCCceeeCCcEEEEeecCc
Q 013871          264 AFWDYV-----DGKQLGTTRAE----CSVTSEW--SPDGR-YFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       264 ~iwd~~-----~~~~i~~~~~~----~~~~~~w--spdg~-~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                      ..+|.+     +++.+..+...    .+-.++.  .++|+ ||++++..     ++.+.||+..+.
T Consensus       204 w~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG-----~~s~~Vydr~~~  264 (355)
T 3amr_A          204 WKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG-----NSSYAIYDRQGK  264 (355)
T ss_dssp             EEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG-----GTEEEEEESSTT
T ss_pred             EEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC-----CCEEEEEECCCC
Confidence            888865     45677665432    3344666  67777 77777754     789999999643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.92  E-value=3.4  Score=45.75  Aligned_cols=238  Identities=13%  Similarity=0.121  Sum_probs=125.7

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+.  ..+..+|.|-|+.++..+.+-+-..   +   +.--.|..+.+|.-.+.+++||++....+.....+ .
T Consensus        35 Dkyicvre~--~~~~~~vvIidl~~~~~~~rrpi~A---d---sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~  105 (1630)
T 1xi4_A           35 DKFICIREK--VGEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  105 (1630)
T ss_pred             CceEEEEec--CCCCceEEEEECCCCCCcccccccc---h---hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-C
Confidence            456655442  2234578999998876554322221   1   22346777888877778999999987554333333 2


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee--ee--eecccceeEEEECCCCCeEEEEEEecccc
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA--RR--SFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~--~~--~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-..  ..+++.+.      ..|.-|++...  ..|+.  .+  +.....++...-+++.++++++.-...+.
T Consensus       106 e~VvfWkWis~--~~l~lVT~------~aVyHW~~~~~--s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~  175 (1630)
T 1xi4_A          106 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (1630)
T ss_pred             CCceEEEecCC--CeeEEEcC------CeEEEeccCCC--CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCC
Confidence            45666666543  34554433      35778888542  23322  11  12245677778899999988776543343


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecC-CCCCeEEEEE---CcCCCEEEEEEcc-CCCeEEEEecccc----eeE-----
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQW---SYSGSEFAVVYGF-MPASATIFNKKCR----PIL-----  232 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~-~~~~i~~v~w---spdg~~~av~~g~-~~~~v~l~d~~~~----~~~-----  232 (434)
                      ...   |...||.++-  ....  .++ +-+...++..   .+....|++.... ..+++.|.++...    +.+     
T Consensus       176 ~v~---G~mQLyS~er--~~sQ--~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~  248 (1630)
T 1xi4_A          176 RVV---GAMQLYSVDR--KVSQ--PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAV  248 (1630)
T ss_pred             ccc---ceeeeeeccc--ccch--hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccc
Confidence            332   6556665531  1111  110 0000001111   1122344432221 1247777776321    111     


Q ss_pred             E--eC----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEe
Q 013871          233 E--LG----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       233 ~--~~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~  277 (434)
                      +  +.    ...-..+..|+.-..+.+.+   ..|.|.++|+.++.++..-
T Consensus       249 ~~~~~~~~~~Dfpv~~~vs~k~g~iy~it---k~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          249 DVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             cccCCcccccCcceEEEeccccCEEEEEe---cCceEEEEecccchhhhhc
Confidence            1  11    12223566777666666665   5579999999999776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.22  E-value=3.5  Score=38.38  Aligned_cols=51  Identities=12%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CCCCeeeecCCCc-EEEEecCCeEEEEeCCCCCCceeeee------ecCCeeEEEEeCC
Q 013871           50 TTWPSIRFSSDEA-VACRMATNEIQFFDTTDFPKGILYRL------RVPGVAAFEVSKA  101 (434)
Q Consensus        50 ~~~~~~~~S~d~~-~la~~~~~~i~v~~~~~~~~~~~~~~------~~~~v~~~~~sp~  101 (434)
                      ..| .++|.|||+ ++++-..+.|++++...........+      ...+...++++|+
T Consensus        19 ~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence            345 899999999 88877778999998532110000111      1235788999995

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.14  E-value=4.2  Score=38.91  Aligned_cols=129  Identities=10%  Similarity=0.136  Sum_probs=74.1

Q ss_pred             CCcEEEEEcCCCcEEEEEeecC-cCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCC----------ceeeeeec---
Q 013871           25 EKNVILWKTETGEAVYQLFQKN-MTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPK----------GILYRLRV---   90 (434)
Q Consensus        25 d~~v~iWd~~~g~~~~~~~~~~-~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~----------~~~~~~~~---   90 (434)
                      ++.||.=++..+..-+.+.... ..-..+..+..||+|++||..++.+|+|-.++....          ......++   
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            3455555665443223333321 011245678999999999999999999999983211          01112222   


Q ss_pred             -----CCeeEEEEeCCCC--CeEEEEecCCCCCCceEEEEEcCCCCCCCce-eee--eecc-----cceeEEEECCCCCe
Q 013871           91 -----PGVAAFEVSKAPG--SHVAVFVPESKGSPASVQIYACGKDLQSQPL-ARR--SFFR-----CSTVQLNWNRGSTG  155 (434)
Q Consensus        91 -----~~v~~~~~sp~~~--~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i-~~~--~~~~-----~~~~~~~ws~~G~~  155 (434)
                           ..|..+.|+|-+.  ..+.+..     .++.|++|++.... ..+. ..+  ..|.     .++.+++|..+|=.
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLt-----sD~~Ir~yDl~~s~-~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT  193 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLK-----EDDTITMFDILNSQ-EKPIVLNKPNNSFGLDARVNDITDLEFSKDGLT  193 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEE-----TTSCEEEEETTCTT-SCCEEESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEe-----cCCEEEEEEcccCC-CCCcchhccccccCCCcccceEEEEEEcCCCcE
Confidence                 3589999999753  3444433     34689999997521 3333 101  1122     45667777776655


Q ss_pred             EEEE
Q 013871          156 LLAV  159 (434)
Q Consensus       156 l~~~  159 (434)
                      |.++
T Consensus       194 LYvl  197 (452)
T 3pbp_A          194 LYCL  197 (452)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.94  E-value=1.9  Score=41.91  Aligned_cols=100  Identities=11%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             CeEEEEECcCCCEEEEEEccCCC-eEEEEecc-c--ceeEEeC--------CcCeeEEEECCC---CCeEEEEecC----
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPA-SATIFNKK-C--RPILELG--------SGPYNTVRWNPK---GKFLCLAGFG----  257 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~-~v~l~d~~-~--~~~~~~~--------~~~~~~i~~SP~---g~~l~~~~~~----  257 (434)
                      .-..++|.|+|+.|+   +.+.+ .|.+++.. +  ..+..+.        .+....|+|+|+   +.+|.++...    
T Consensus        28 ~P~~~a~~pdG~l~V---~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWGPDNQIWL---TERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEECTTSCEEE---EETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CceEEEEcCCCcEEE---EEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            446999999998666   34454 78888753 2  2233332        344568999995   5544444321    


Q ss_pred             --CC----CCeEEEEEccCC-------EEEE-Eee---CCCceEEEECCCCCEEEEEEc
Q 013871          258 --NL----PGDMAFWDYVDG-------KQLG-TTR---AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       258 --~~----~g~i~iwd~~~~-------~~i~-~~~---~~~~~~~~wspdg~~l~tas~  299 (434)
                        ..    ...|.-++....       +.+. .+.   .|....+.|.|||..+++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence              00    135666665421       2222 222   356667999999987777554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.75  E-value=5.5  Score=44.16  Aligned_cols=219  Identities=10%  Similarity=0.150  Sum_probs=123.4

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|.|.|+.+........+.   ..+.-++|. .+.||+-      ....++|+++.+   .+.+....+ ..+++-.+|
T Consensus        48 ~~vvIidl~~~~~~~rrpi~---AdsAIMnP~-~~iiALr------ag~~lQiFnl~~---k~klks~~~-~e~VvfWkW  113 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPA-SKVIALK------AGKTLQIFNIEM---KSKMKAHTM-TDDVTFWKW  113 (1630)
T ss_pred             ceEEEEECCCCCCccccccc---chhhccCCC-cceEEEe------cCCeEEEeehHH---hhhhccccc-CCCceEEEe
Confidence            48999999886542211222   234456776 5677763      246899999987   566665554 346677788


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC-----CCCeEEEEECcCCCEEEEEE-----ccCCC
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-----EGPVHDVQWSYSGSEFAVVY-----GFMPA  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~-----~~~i~~v~wspdg~~~av~~-----g~~~~  219 (434)
                      -.+.+ |.+++.             +.+|.+++.+.......++.     ...|-...-+++.++++++.     |...|
T Consensus       114 is~~~-l~lVT~-------------~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G  179 (1630)
T 1xi4_A          114 ISLNT-VALVTD-------------NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  179 (1630)
T ss_pred             cCCCe-eEEEcC-------------CeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccc
Confidence            66544 444332             23677766553221111111     45677888899999998752     22456


Q ss_pred             eEEEEecccceeEEe--CCcCeeEEEE---CCCCCeEEEEecCCCCCeEEEEEccCC---------EEEEEe-e----CC
Q 013871          220 SATIFNKKCRPILEL--GSGPYNTVRW---NPKGKFLCLAGFGNLPGDMAFWDYVDG---------KQLGTT-R----AE  280 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~--~~~~~~~i~~---SP~g~~l~~~~~~~~~g~i~iwd~~~~---------~~i~~~-~----~~  280 (434)
                      .+.+|..+.+....+  |.+...++..   .+....++.+......|++.|-++...         +.+..+ .    ..
T Consensus       180 ~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D  259 (1630)
T 1xi4_A          180 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (1630)
T ss_pred             eeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence            888998754332222  2222211111   122335555544322368888887432         111111 0    11


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      -++.+..|+.-..+..-|.      -|-|.++|+ +|.+++..
T Consensus       260 fpv~~~vs~k~g~iy~itk------~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          260 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             cceEEEeccccCEEEEEec------CceEEEEecccchhhhhc
Confidence            3344677777667777776      788999998 56666654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.61  E-value=0.97  Score=44.74  Aligned_cols=117  Identities=14%  Similarity=0.219  Sum_probs=78.6

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccc------e--------eEE--eCCcCeeEEEECCCCCeEEEEecCCCC
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------P--------ILE--LGSGPYNTVRWNPKGKFLCLAGFGNLP  260 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------~--------~~~--~~~~~~~~i~~SP~g~~l~~~~~~~~~  260 (434)
                      .-|.+..+|||+++++ .|--..++.++|.+..      .        ..+  ++.++ ...+|.++| ...+.-|  ++
T Consensus       324 sPHGv~vsPDGkyi~v-~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G-~aYTtlf--id  398 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIA-AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRG-NAYTTLF--ID  398 (638)
T ss_dssp             SCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSS-EEEEEET--TT
T ss_pred             CCcceeeCCCCCEEEE-cCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCC-ceEeeee--ec
Confidence            4478999999999987 5777789999997521      1        111  23444 457899999 4444443  56


Q ss_pred             CeEEEEEccCC----------EEEEEeeCC-CceEEEE------CCCCCEEEEEEcCCceee-------CCcEEEEeecC
Q 013871          261 GDMAFWDYVDG----------KQLGTTRAE-CSVTSEW------SPDGRYFMTATTAPRLQI-------DNGIKIFHHNG  316 (434)
Q Consensus       261 g~i~iwd~~~~----------~~i~~~~~~-~~~~~~w------spdg~~l~tas~~prl~~-------D~~i~iw~~~g  316 (434)
                      ..|.-|++...          ..+..+.-| .+-++.-      .|||++|++.....+-|.       -..-+|.|++|
T Consensus       399 SqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          399 SQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             ceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            79999998742          456666555 3334433      799999999987554221       12468999999


Q ss_pred             ce
Q 013871          317 SL  318 (434)
Q Consensus       317 ~~  318 (434)
                      ..
T Consensus       479 dk  480 (638)
T 3sbq_A          479 DE  480 (638)
T ss_dssp             SS
T ss_pred             Cc
Confidence            74

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=93.54  E-value=7.7  Score=39.95  Aligned_cols=254  Identities=9%  Similarity=0.003  Sum_probs=124.4

Q ss_pred             eEE-ecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE-EEeecCcCCC------CCCeeeecCCCcEEEEe-------c
Q 013871            4 LLT-CLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY-QLFQKNMTKT------TWPSIRFSSDEAVACRM-------A   68 (434)
Q Consensus         4 ~l~-fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~-~~~~~~~~~~------~~~~~~~S~d~~~la~~-------~   68 (434)
                      .+. |||||++++..-...+++-..++++|+.+++.+. .|. .. .+.      ....++|.+++.++++.       .
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~-~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~  210 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PI-TNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CB-CTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cc-cccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence            345 9999999886544445555789999999998763 222 10 001      11235888666666642       1


Q ss_pred             ----CCeEEEEeCCCCCCc--eeeeeecCCe-eEEEEeCCCCC---eEEEEecCCCCCCceEEEEEcCCCCCCCceeeee
Q 013871           69 ----TNEIQFFDTTDFPKG--ILYRLRVPGV-AAFEVSKAPGS---HVAVFVPESKGSPASVQIYACGKDLQSQPLARRS  138 (434)
Q Consensus        69 ----~~~i~v~~~~~~~~~--~~~~~~~~~v-~~~~~sp~~~~---~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~  138 (434)
                          ...|+.|...+....  .+.......+ .+...++++..   .+.+... .......+.+.+....  ..++..+.
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~--~~~~~~l~  287 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFYNYDNYILDTKYK--NLKLQKIN  287 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSSCEEEEEEECSSS--SCEEEECC
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccCceeEEEEcCCCC--CCcceEee
Confidence                137888887654221  1122222222 23344555443   2222221 1122234444444321  12222222


Q ss_pred             ecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc---------eeeeecCCCCCeEEEEECcCCCE
Q 013871          139 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH---------EGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       139 ~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~---------~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                      ..  ....+.++.+| .+++.+.++.+..+.. +....|..+++....         ...+.-.....+.++.|..+.  
T Consensus       288 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  361 (711)
T 4hvt_A          288 MP--SDATLQGSFKE-YVFWLLRSDWKFKSHN-IKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKDR--  361 (711)
T ss_dssp             SC--TTCEEEEEETT-EEEEECSSCEEETTEE-ECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSSC--
T ss_pred             cC--CcceEeeeECC-EEEEEECccccccccc-CCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECCE--
Confidence            11  12334455555 4444332221111111 122246666654321         112333334567789998763  


Q ss_pred             EEEEEccCCC--eEEEEecccce--eEE---eC-CcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEcc
Q 013871          210 FAVVYGFMPA--SATIFNKKCRP--ILE---LG-SGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       210 ~av~~g~~~~--~v~l~d~~~~~--~~~---~~-~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~  269 (434)
                      +++. ...++  .+.++|+....  +..   +. .+.+..+..++++.. ++..+.-...+.++.+|+.
T Consensus       362 l~~~-~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          362 VFLA-TYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEEE-EEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEEE-EEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            4432 23344  67778875332  222   33 355666777888764 4444444457899999987

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.14  E-value=7.9  Score=38.84  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             CCeEEEEeccc-ceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC-c--eEEEECCCCC
Q 013871          218 PASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-S--VTSEWSPDGR  292 (434)
Q Consensus       218 ~~~v~l~d~~~-~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~-~--~~~~wspdg~  292 (434)
                      .+.+.-||++. +.+-+.. ..+...-.....|.++++++   .+|.++.||.++++.+..++... +  .-+.|..||+
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~---~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~  541 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGT---GDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEEC---CCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence            35788888864 4433331 12222111122466777776   66899999999999998887652 2  2277888998


Q ss_pred             EEEEEE
Q 013871          293 YFMTAT  298 (434)
Q Consensus       293 ~l~tas  298 (434)
                      .++...
T Consensus       542 qYv~~~  547 (582)
T 1flg_A          542 QYLGVT  547 (582)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.61  E-value=7.4  Score=37.21  Aligned_cols=146  Identities=10%  Similarity=0.108  Sum_probs=81.4

Q ss_pred             cCCCcEEEEecCCeEEEEeCCCCCCceeeeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCC-CC-
Q 013871           58 SSDEAVACRMATNEIQFFDTTDFPKGILYRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDL-QS-  131 (434)
Q Consensus        58 S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~-~~-  131 (434)
                      ..+|.-++...+++||.-++.........++.    ...+..+.+||+ +.++|++.+      ..|.|..+|... .. 
T Consensus        29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSps-G~lLAl~g~------~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTS-GDLLCLFND------NEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTT-SSEEEEECS------SEEEEEECCTTCSCCC
T ss_pred             EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCC-CCEEEEecC------CeEEEEEecCccccCc
Confidence            34677777777788888777643322222222    335788999999 678887632      367777777311 01 


Q ss_pred             -----Cceeeeeec--------ccceeEEEECCCC---CeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC--
Q 013871          132 -----QPLARRSFF--------RCSTVQLNWNRGS---TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--  193 (434)
Q Consensus       132 -----~~i~~~~~~--------~~~~~~~~ws~~G---~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~--  193 (434)
                           ..+..+++.        ...+.++.|+|-|   ..|++++   .|...+.|.         +....+....+.  
T Consensus       102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt---sD~~Ir~yD---------l~~s~~~P~~L~k~  169 (452)
T 3pbp_A          102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK---EDDTITMFD---------ILNSQEKPIVLNKP  169 (452)
T ss_dssp             CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE---TTSCEEEEE---------TTCTTSCCEEESCC
T ss_pred             ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe---cCCEEEEEE---------cccCCCCCcchhcc
Confidence                 111212221        3458899999965   4566665   444444432         111111111111  


Q ss_pred             --------CCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 013871          194 --------KEGPVHDVQWSYSGSEFAVVYGFMPASAT  222 (434)
Q Consensus       194 --------~~~~i~~v~wspdg~~~av~~g~~~~~v~  222 (434)
                              ....|.+++|.+++-.+.+.+...+|.|+
T Consensus       170 ~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          170 NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence                    12578899999987666665444455554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=92.53  E-value=6.2  Score=36.12  Aligned_cols=96  Identities=9%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc-cceeEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD  267 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~-~~~~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd  267 (434)
                      ...++.+.+.|++..+++  + .++.+.+.+.. +..-..+  .    ...+..+.|.|++++++++.    +|.| ++.
T Consensus       204 ~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~----~g~i-~~S  275 (327)
T 2xbg_A          204 SRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG----AGAL-LCS  275 (327)
T ss_dssp             SSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES----TTCE-EEE
T ss_pred             CCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC----CCeE-EEe
Confidence            567889999999876653  2 34666665322 2211111  1    12467899999888877664    3456 444


Q ss_pred             ccCCEEEEEee-----CCCceEEEECCCCCEEEEEEc
Q 013871          268 YVDGKQLGTTR-----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       268 ~~~~~~i~~~~-----~~~~~~~~wspdg~~l~tas~  299 (434)
                      .+.++.-....     ......+.|.++++.+ .++.
T Consensus       276 ~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~-~~G~  311 (327)
T 2xbg_A          276 QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGF-ILGQ  311 (327)
T ss_dssp             SSTTSSCEECGGGTTSSSCCCEEEEEETTEEE-EECS
T ss_pred             CCCCcccEEcCccCCCCCCeEEEEEECCCceE-EEcC
Confidence            44443222222     1244557887666644 4444

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.33  E-value=7.1  Score=36.32  Aligned_cols=197  Identities=12%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             cEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCC---CCCeE-EEEecCCCCCCceEEEEEcCCCCCCCceeee
Q 013871           62 AVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKA---PGSHV-AVFVPESKGSPASVQIYACGKDLQSQPLARR  137 (434)
Q Consensus        62 ~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~i-a~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~  137 (434)
                      .+|++...+.|.+||+.. .  ....+....+..+.+-|+   ++..+ ..+..+......+|++|++...  ..++...
T Consensus        42 ~ii~t~k~~gL~Vydl~G-~--~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~--~~~l~~i  116 (355)
T 3amr_A           42 KLITTNKKSGLVVYSLDG-K--MLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK--NGTLQSM  116 (355)
T ss_dssp             EEEEEETTTEEEEEETTS-C--EEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT--TCCEEEC
T ss_pred             EEEEEcCCCCEEEEcCCC-c--EEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC--CCceeec
Confidence            355555667999999943 2  223344445555555552   11221 2233332211468999988421  2234333


Q ss_pred             ee---------cccceeEEEECCC-CCeEEEEEEecccccCceeecceeEEEEeeCC------cceeeeecCCCCCeEEE
Q 013871          138 SF---------FRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDG------THEGLVPLRKEGPVHDV  201 (434)
Q Consensus       138 ~~---------~~~~~~~~~ws~~-G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~------~~~~~v~l~~~~~i~~v  201 (434)
                      ..         ....-.++.-++. |..-+++.    ++.+     ....|.+...+      .....+.+  .+.+..+
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~----~k~G-----~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Egc  185 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT----GKEG-----EFEQYELKADKNGYISGKKVRAFKM--NSQTEGM  185 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE----CSSS-----EEEEEEEEECTTSCEEEEEEEEEEC--SSCEEEE
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEE----CCCC-----eEEEEEEEeCCCCcccceEEEEecC--CCCcceE
Confidence            11         1111123333664 43223321    2222     22233343211      11122333  5678888


Q ss_pred             EECcCCCEEEEEEccCCCeEEEEecc------cceeEEeCC----cCeeEEEE--CCCCC-eEEEEecCCCCCeEEEEEc
Q 013871          202 QWSYSGSEFAVVYGFMPASATIFNKK------CRPILELGS----GPYNTVRW--NPKGK-FLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       202 ~wspdg~~~av~~g~~~~~v~l~d~~------~~~~~~~~~----~~~~~i~~--SP~g~-~l~~~~~~~~~g~i~iwd~  268 (434)
                      +..+...++.+  +.++.-|+.||.+      ...+..+..    ..+..|++  .++|+ ||++++-++  ..+.+||+
T Consensus       186 vvDd~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~--~s~~Vydr  261 (355)
T 3amr_A          186 AADDEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN--SSYAIYDR  261 (355)
T ss_dssp             EEETTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG--TEEEEEES
T ss_pred             EEcCCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC--CEEEEEEC
Confidence            88887777775  6667778888865      223333322    23444554  78887 777766554  58999999


Q ss_pred             c-CCEEEEEee
Q 013871          269 V-DGKQLGTTR  278 (434)
Q Consensus       269 ~-~~~~i~~~~  278 (434)
                      + +.+.+..+.
T Consensus       262 ~~~~~~vg~f~  272 (355)
T 3amr_A          262 QGKNKYVADFR  272 (355)
T ss_dssp             STTCCEEEEEE
T ss_pred             CCCCcEEEEEE
Confidence            7 677777774

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.96  E-value=11  Score=37.84  Aligned_cols=59  Identities=15%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             CCeEEEEEccCCEEEEEeeCCC-ceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          260 PGDMAFWDYVDGKQLGTTRAEC-SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~-~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|.-||+.+++.+....... ...-.....|..++.++.      |+.++.||. +|+++.+...
T Consensus       452 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~------dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTL------DGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECC------CCeEEEEECCCCCEEEEeeC
Confidence            4789999999999887775321 111112235566667777      999999997 6877765543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.51  E-value=11  Score=36.65  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=53.3

Q ss_pred             CCCeEEEEECcC---CCEEEEEEccCC-----------CeEEEEecc-----------cceeEEe----CCcCeeEEEEC
Q 013871          195 EGPVHDVQWSYS---GSEFAVVYGFMP-----------ASATIFNKK-----------CRPILEL----GSGPYNTVRWN  245 (434)
Q Consensus       195 ~~~i~~v~wspd---g~~~av~~g~~~-----------~~v~l~d~~-----------~~~~~~~----~~~~~~~i~~S  245 (434)
                      ++....|+++|+   ...|.+.+....           ..|.-|.+.           .+.+.++    .......|.|.
T Consensus        68 e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fg  147 (463)
T 2wg3_C           68 ERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFG  147 (463)
T ss_dssp             CCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEEC
T ss_pred             CCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeEC
Confidence            457789999996   345555443211           134445432           1223333    12334679999


Q ss_pred             CCCCeEEEEecCC--------------CCCeEEEEEccCC---------------------EEEEEeeCCCceEEEECCC
Q 013871          246 PKGKFLCLAGFGN--------------LPGDMAFWDYVDG---------------------KQLGTTRAECSVTSEWSPD  290 (434)
Q Consensus       246 P~g~~l~~~~~~~--------------~~g~i~iwd~~~~---------------------~~i~~~~~~~~~~~~wspd  290 (434)
                      |||.+.++.|...              ..|.|.=.|.+..                     ..|...-..++..++|.|.
T Consensus       148 pDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~  227 (463)
T 2wg3_C          148 PDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH  227 (463)
T ss_dssp             TTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred             CCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence            9998666655321              2466666666541                     1234433346667999997

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.99  E-value=14  Score=37.01  Aligned_cols=59  Identities=22%  Similarity=0.282  Sum_probs=40.3

Q ss_pred             CCeEEEEEccCCEEEEEeeCCCce-EEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          260 PGDMAFWDYVDGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~~~~-~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      .|.|.-||+.+++.+......... .-.....|..+++++.      |+.++.||. +|+++.+...
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~------dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTG------DGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECT------TSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECC------CCcEEEEECCCCCEEEEecC
Confidence            578999999999888776543211 1111224566777877      999999997 6887765543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=89.28  E-value=2.9  Score=36.19  Aligned_cols=92  Identities=10%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEeccc-------ceeEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-------~~~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      .+.+++|+|+|..++|    ..+++.-.+...       ..-..++   -....++.|.|+|.+.++ .    +|.|+-+
T Consensus        42 ~~~~laf~P~G~LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~----dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-S----KDKLYKA  112 (236)
T ss_dssp             TCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-E----TTEEEEE
T ss_pred             cceeEEECCCccEEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-C----CCEEEEe
Confidence            5679999999998776    245666666532       1112221   122478999999998887 3    2789888


Q ss_pred             EccC---------CEEEEEeeCCCceEEEECCCCCEEEEE
Q 013871          267 DYVD---------GKQLGTTRAECSVTSEWSPDGRYFMTA  297 (434)
Q Consensus       267 d~~~---------~~~i~~~~~~~~~~~~wspdg~~l~ta  297 (434)
                      +.-+         ...|....-.....+.+.|+|...+..
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence            7632         233333222355669999999988776

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.07  E-value=23  Score=34.30  Aligned_cols=100  Identities=12%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             eEEEEECcCCC-EEEEEEccCCCeEEEEecccc----eeEEeC-----------CcCeeEEEECCC----CCeEEEEecC
Q 013871          198 VHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR----PILELG-----------SGPYNTVRWNPK----GKFLCLAGFG  257 (434)
Q Consensus       198 i~~v~wspdg~-~~av~~g~~~~~v~l~d~~~~----~~~~~~-----------~~~~~~i~~SP~----g~~l~~~~~~  257 (434)
                      -..|+|.|||. ++.|  ..+.+.|++++..+.    .+..+.           .+....|+|+|+    +.+.++-...
T Consensus        16 P~~~a~~pdG~~rl~V--~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFI--LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             EEEEECCSSSSCCEEE--EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             ceEEEECCCCCeEEEE--EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            36899999996 4444  356789999975432    222221           245677999996    4433332211


Q ss_pred             CC-------C--CeEEEEEcc----------CCEEEEEee----CCCceEEEECCCCCEEEEEEc
Q 013871          258 NL-------P--GDMAFWDYV----------DGKQLGTTR----AECSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       258 ~~-------~--g~i~iwd~~----------~~~~i~~~~----~~~~~~~~wspdg~~l~tas~  299 (434)
                      ..       +  ..|.-|.+.          +.+.|..+.    .|....+.|.|||..+++.+.
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            10       0  133334442          124443332    356667999999987777665

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.05  E-value=30  Score=35.59  Aligned_cols=240  Identities=9%  Similarity=-0.029  Sum_probs=112.0

Q ss_pred             ecCCCcEEEEe-c-C----CeEEEEeCCCCCCceeeeee-cC--------CeeEEEEeCCCCCeEEEE---ecC---CCC
Q 013871           57 FSSDEAVACRM-A-T----NEIQFFDTTDFPKGILYRLR-VP--------GVAAFEVSKAPGSHVAVF---VPE---SKG  115 (434)
Q Consensus        57 ~S~d~~~la~~-~-~----~~i~v~~~~~~~~~~~~~~~-~~--------~v~~~~~sp~~~~~ia~~---~~~---~~~  115 (434)
                      ++||+++++.+ + +    .+|+++|+.+..... -.+. ..        ....++|-.+ +. +.+.   -++   ..+
T Consensus       137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-~~~~~~~k~~~~~~~~~~~~~W~d~-~~-~~~~~~~~~~~~~~~~  213 (711)
T 4hvt_A          137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-NGFEPITNSGKLLEGKFTYPTWINK-DT-IIFNLVLHKNEITSSL  213 (711)
T ss_dssp             CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-TCSCCBCTTCCBCCEETCCEEEEET-TE-EEECCCCSTTCBCTTS
T ss_pred             cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-CCcccccccccccccccceeeEECC-CE-EEEEeCCCCCCcCcCC
Confidence            89999988876 2 1    289999987642110 1111 00        0123477633 22 2221   111   234


Q ss_pred             CCceEEEEEcCCCCCCCceeeeeec--ccc-eeEEEECCCCCeE---EEEEEecccccCceeecceeEEEEeeCCcceee
Q 013871          116 SPASVQIYACGKDLQSQPLARRSFF--RCS-TVQLNWNRGSTGL---LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL  189 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~~~~i~~~~~~--~~~-~~~~~ws~~G~~l---~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~  189 (434)
                      .+..|+.|.+-+.   ..-...-|.  ..+ .+...-+.++.+.   +++... .+..      ...+|+++........
T Consensus       214 ~~~~v~~~~~Gt~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~------~~~~~~~~~~~~~~~~  283 (711)
T 4hvt_A          214 YPNSLYIWKRGES---IEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISAN-KDFY------NYDNYILDTKYKNLKL  283 (711)
T ss_dssp             SBCEEEEEETTSC---GGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEE-SSSS------CEEEEEEECSSSSCEE
T ss_pred             CCCEEEEEECCCC---hHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEe-cccC------ceeEEEEcCCCCCCcc
Confidence            5678999998541   111111111  111 2334456677642   233211 1211      1346666654211122


Q ss_pred             eecCCCCCeEEEEECcCCCEEEEEEcc---------CCCeEEEEecccc--------eeEE-e---CCcCeeEEEECCCC
Q 013871          190 VPLRKEGPVHDVQWSYSGSEFAVVYGF---------MPASATIFNKKCR--------PILE-L---GSGPYNTVRWNPKG  248 (434)
Q Consensus       190 v~l~~~~~i~~v~wspdg~~~av~~g~---------~~~~v~l~d~~~~--------~~~~-~---~~~~~~~i~~SP~g  248 (434)
                      +.+..... ..+.+++++..++. ...         ..++|...|+...        .... +   ....+..+.|..+ 
T Consensus       284 ~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  360 (711)
T 4hvt_A          284 QKINMPSD-ATLQGSFKEYVFWL-LRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-  360 (711)
T ss_dssp             EECCSCTT-CEEEEEETTEEEEE-CSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-
T ss_pred             eEeecCCc-ceEeeeECCEEEEE-ECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-
Confidence            33322222 22345556644442 211         2447888887531        1222 2   2345667888875 


Q ss_pred             CeEEEEecCCCCCeEEEEEccCCE-EEEE---eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          249 KFLCLAGFGNLPGDMAFWDYVDGK-QLGT---TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       249 ~~l~~~~~~~~~g~i~iwd~~~~~-~i~~---~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .++++.. .+....|.++|+.+++ .+..   +.. ..+..+..++++..++...+++..  -..+..++..
T Consensus       361 ~l~~~~~-~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~--P~~~~~~d~~  429 (711)
T 4hvt_A          361 RVFLATY-DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIV--PPTIYLWVKT  429 (711)
T ss_dssp             CEEEEEE-ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSS--CCEEEEECTT
T ss_pred             EEEEEEE-ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCC--CCEEEEEeCC
Confidence            3444333 3333568889887764 1222   222 233346777887655544332211  3455555554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=83.90  E-value=25  Score=31.93  Aligned_cols=127  Identities=13%  Similarity=0.215  Sum_probs=72.5

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEE-Eeccc---ceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATI-FNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l-~d~~~---~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      .+.++++++.|++..+++  +. .+.+.. .|..+   ..+.......+..+.++|+|++++++    .+|.+++.+.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~--g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~  234 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAV--SS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDN  234 (327)
T ss_dssp             CCCEEEEEECTTSCEEEE--ET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTE
T ss_pred             CcceEEEEEcCCCcEEEE--EC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCC
Confidence            567899999999877763  43 333333 34212   22222234567889999999877655    346777764333


Q ss_pred             CEEEEEeeC------CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-----cccceeeEEEcCC
Q 013871          271 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-----FDKLFQAEWKPVS  336 (434)
Q Consensus       271 ~~~i~~~~~------~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~-----~~~~~~~~w~p~~  336 (434)
                      ++.-.....      .....+.+.|+++.++++.       ++.+ .+..+ |+.-....     ...++.+.|.+..
T Consensus       235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-------~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~  304 (327)
T 2xbg_A          235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-------AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD  304 (327)
T ss_dssp             EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-------TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT
T ss_pred             CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-------CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC
Confidence            443332221      1355688999888766654       5555 34444 33222221     2457788886443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=81.00  E-value=29  Score=30.68  Aligned_cols=79  Identities=8%  Similarity=0.067  Sum_probs=42.5

Q ss_pred             CeEEEEecccceeEEeC---Cc--CeeEEEECCCCCeEEEEecCCC--CCeEEEEEccCCEEEEE--eeCCCceEEEECC
Q 013871          219 ASATIFNKKCRPILELG---SG--PYNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGT--TRAECSVTSEWSP  289 (434)
Q Consensus       219 ~~v~l~d~~~~~~~~~~---~~--~~~~i~~SP~g~~l~~~~~~~~--~g~i~iwd~~~~~~i~~--~~~~~~~~~~wsp  289 (434)
                      ..+.+||.....-..+.   ..  ....+.+  +++++++||.+..  ...+++||..+.+-...  ............-
T Consensus       175 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~  252 (301)
T 2vpj_A          175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL  252 (301)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred             ceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE
Confidence            36889998766554442   11  1122333  6777788876432  35799999987743322  2222111112222


Q ss_pred             CCCEEEEEEc
Q 013871          290 DGRYFMTATT  299 (434)
Q Consensus       290 dg~~l~tas~  299 (434)
                      +++.++.++.
T Consensus       253 ~~~i~v~GG~  262 (301)
T 2vpj_A          253 RGRLYAIAGY  262 (301)
T ss_dssp             TTEEEEECCB
T ss_pred             CCEEEEEcCc
Confidence            6676676665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=80.93  E-value=2.5  Score=41.87  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCC------E-------EEEEee-CCCceEEEECCCCCEEEEEEcCCceee
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------K-------QLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQI  305 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~------~-------~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~  305 (434)
                      ..+..+|||++++++|.  +..++.++|.++.      +       .+...+ +-...+.+|.++| ...|.-.     +
T Consensus       326 HGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf-----i  397 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF-----I  397 (638)
T ss_dssp             CCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET-----T
T ss_pred             cceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeee-----e
Confidence            45889999999999874  5689999998742      1       133332 3378889999999 4333332     3


Q ss_pred             CCcEEEEeecC
Q 013871          306 DNGIKIFHHNG  316 (434)
Q Consensus       306 D~~i~iw~~~g  316 (434)
                      |..|.-|++..
T Consensus       398 dSqvvkWni~~  408 (638)
T 3sbq_A          398 DSQVVKWNMEE  408 (638)
T ss_dssp             TTEEEEEEHHH
T ss_pred             cceEEEEeccH
Confidence            99999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	434
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.004

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 10/118 (8%)

Query: 196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAG 255
             +  + +  +G   AV            NK  +  L L      ++++   GK+    G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 256 FGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 312
                  +  W    G  +  ++   SV S + S D +Y +T +       D    ++
Sbjct: 285 KD---NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATVY 333

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 17/124 (13%), Positives = 40/124 (32%), Gaps = 14/124 (11%)

Query: 195 EGPVHDVQWSYSGSEFAVVYG---FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFL 251
           E  ++ + +  +G+ FA                 +      +       +V ++  G+ L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 252 CLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGI 309
                     +   WD +   + G     +  V+    + DG    T +       D+ +
Sbjct: 286 LAGYDD---FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSFL 336

Query: 310 KIFH 313
           KI++
Sbjct: 337 KIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 7/90 (7%)

Query: 225 NKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 284
              CR          N + + P G                     +          C +T
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 285 S-EWSPDGRYFMTATTAPRLQIDNGIKIFH 313
           S  +S  GR  +          D    ++ 
Sbjct: 275 SVSFSKSGRLLLAGYD------DFNCNVWD 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN 258
               +  SGS    +  +  ++       C   L         V ++  GKF+       
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVST-----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADD- 268

Query: 259 LPGDMAFWDYVDGKQLGTTRA-ECSVTS-EWSPDGRYFMTATTAPRLQIDNGIKIF 312
               +  WDY + + + T  A E  VTS ++     Y +T +       D  +K++
Sbjct: 269 --KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV------DQTVKVW 316

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 27/298 (9%), Positives = 62/298 (20%), Gaps = 21/298 (7%)

Query: 20  SSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTD 79
             T +   + ++   TG+A                           R     +       
Sbjct: 60  HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 80  FPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF 139
                     +      +           F  +   +   V       D++ + +   + 
Sbjct: 120 TVIERSREAMITDFTISDN---SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT 176

Query: 140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 199
                    ++  S  L  ++   +D +         LN+     +   ++PL   G  +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPS----PDRVVLNFSFEVVSKPFVIPLIP-GSPN 231

Query: 200 DVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLA 254
             +              +       +       +                   G+F    
Sbjct: 232 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYY 291

Query: 255 GFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 312
                 G +  +D    K          +    S D +  M          D  I  F
Sbjct: 292 QGAPEKGVLLKYDVKTRKVTEVKNNLTDLR--LSADRKTVMVRKD------DGKIYTF 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 20/139 (14%), Positives = 35/139 (25%), Gaps = 30/139 (21%)

Query: 195 EGPVHDVQWSYSGSEFAVV-------------YGFMPASATIFNKKCRPILELGSGPYNT 241
           +  V+ V ++  G                         S T  +  C            +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 242 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTS-------EWSPDGRY 293
           V      +++           + FWD   G  L   +    SV S          P+   
Sbjct: 314 VATTQNDEYILSGSKD---RGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 294 FMTATTAPRLQIDNGIKIF 312
           F T +       D   +I+
Sbjct: 371 FATGSG------DCKARIW 383

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTS-EWSPDGRYF 294
           + P N++ ++P+ KFL  AG     G ++ W+    K++         +  + +      
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSD---GIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL 307

Query: 295 MTATTAPRLQIDNGIKI 311
             AT+      D+  K 
Sbjct: 308 CLATS------DDTFKT 318

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 13/86 (15%)

Query: 234 LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTS-EWSP 289
               P +   WN     + +        ++  ++    K +     +     VT  +W+P
Sbjct: 5   FLVEPISCHAWNKDRTQIAICPNN---HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 290 DGRYFMTATTAPRLQIDNGIKIFHHN 315
           D    +T  T      D    ++   
Sbjct: 62  DSNRIVTCGT------DRNAYVWTLK 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	434
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.81
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.79
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.79
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.77
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.74
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.57
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.53
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.18
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	99.08
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.75
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.59
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.52
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.45
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.29
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.02
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	98.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.97
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.7
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.57
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.5
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.25
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.13
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.07
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.62
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.4
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.21
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.78
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	92.47
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.02
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	90.03
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.19
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	80.39

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-32  Score=256.39  Aligned_cols=274  Identities=12%  Similarity=0.124  Sum_probs=209.0

Q ss_pred             CcceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEE---EEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEe
Q 013871            1 MLLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAV---YQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFD   76 (434)
Q Consensus         1 ~V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~---~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~   76 (434)
                      .|++|+|||+|+||+|++      |+.|+|||+.++...   ..+... .|...+.+++|+||+++|+++ .++.|++||
T Consensus        53 ~V~~v~fs~~g~~latg~------dg~V~iWd~~~~~~~~~~~~~~~~-~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPVSQLDCL-NRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCSEEEECS-CTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEE------CCEEEEEEccCCcccceeEEeeec-CCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence            378999999999999966      678999999776432   222221 234567799999999999988 568999999


Q ss_pred             CCCCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCC
Q 013871           77 TTDFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        77 ~~~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      +..........  .+...+..+.|+|+ +..++..     +.+..|.+|++.+   .........+...+..+.|+++|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~-----~~d~~i~~~~~~~---~~~~~~~~~~~~~v~~l~~s~~~~  196 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISPD-SKVCFSC-----CSDGNIAVWDLHN---QTLVRQFQGHTDGASCIDISNDGT  196 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTT-SSEEEEE-----ETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccccc-ccccccc-----ccccccccccccc---cccccccccccccccccccccccc
Confidence            87654322233  34557889999998 4455432     3456899999987   677777777788889999999999


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL  234 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~  234 (434)
                      .+++..   .|..         +..+++... .....+...++|.+++|+|+++.|+  ++..++.+.+||++.......
T Consensus       197 ~~~~~~---~d~~---------v~i~d~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~--~~~~d~~i~i~d~~~~~~~~~  261 (337)
T d1gxra_         197 KLWTGG---LDNT---------VRSWDLREG-RQLQQHDFTSQIFSLGYCPTGEWLA--VGMESSNVEVLHVNKPDKYQL  261 (337)
T ss_dssp             EEEEEE---TTSE---------EEEEETTTT-EEEEEEECSSCEEEEEECTTSSEEE--EEETTSCEEEEETTSSCEEEE
T ss_pred             cccccc---cccc---------ccccccccc-eeecccccccceEEEEEcccccccc--eeccccccccccccccccccc
Confidence            876532   2322         333333332 2333444578999999999999988  477789999999975554433


Q ss_pred             --CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEE
Q 013871          235 --GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI  311 (434)
Q Consensus       235 --~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~i  311 (434)
                        |...+++++|+|+|++|++++   .+|.|++||+.+++.+....+. .+..++|+|||++|++++.      |+.|+|
T Consensus       262 ~~~~~~i~~v~~s~~g~~l~s~s---~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~------D~~I~v  332 (337)
T d1gxra_         262 HLHESCVLSLKFAYCGKWFVSTG---KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG------DKKATV  332 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET------TSCEEE
T ss_pred             cccccccceEEECCCCCEEEEEe---CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeC------CCeEEE
Confidence              788999999999999999998   5579999999999888877765 5667999999999999999      999999


Q ss_pred             Eee
Q 013871          312 FHH  314 (434)
Q Consensus       312 w~~  314 (434)
                      ||+
T Consensus       333 Wdl  335 (337)
T d1gxra_         333 YEV  335 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.9e-31  Score=245.84  Aligned_cols=275  Identities=12%  Similarity=0.050  Sum_probs=208.7

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCC
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFP   81 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~   81 (434)
                      .+|+++|+|+.|+.+.      ++.|.+||+.+++.+..|..+   ...+.+++|+|||++||++ .|++|+||++....
T Consensus        21 ~~~a~~~~g~~l~~~~------~~~v~i~~~~~~~~~~~~~~H---~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          21 VVLGNTPAGDKIQYCN------GTSVYTVPVGSLTDTEIYTEH---SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCCEECTTSSEEEEEE------TTEEEEEETTCSSCCEEECCC---SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             EEEEEcCCCCEEEEEe------CCEEEEEECCCCceeEEEcCC---CCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            4689999999999876      567999999999888887654   3778899999999999988 57899999998755


Q ss_pred             Ccee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEE
Q 013871           82 KGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV  159 (434)
Q Consensus        82 ~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~  159 (434)
                      ....  ...+...|.+++|+|+ +..+++..   .+....+++|++..   ++.+.....+...+..+.|+|+|..+++.
T Consensus        92 ~~~~~~~~~~~~~v~~v~~s~d-~~~l~~~~---~~~~~~~~v~~~~~---~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          92 HILKTTIPVFSGPVKDISWDSE-SKRIAAVG---EGRERFGHVFLFDT---GTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             CCEEEEEECSSSCEEEEEECTT-SCEEEEEE---CCSSCSEEEEETTT---CCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             cccccccccccCcccccccccc-cccccccc---cccccccccccccc---ccccccccccccccccccccccceeeecc
Confidence            4322  2334568999999998 44444332   23445789999987   67777778888888999999999986543


Q ss_pred             EEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe----
Q 013871          160 AQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL----  234 (434)
Q Consensus       160 ~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~----  234 (434)
                      .+  .|...+         .++............+..+|.++.|+|+++.++  ++..++.+.+||.+. ..+..+    
T Consensus       165 gs--~d~~i~---------i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~--~~~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         165 GS--DDNTVA---------IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA--STGGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             EE--TTSCEE---------EEETTTBEEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             cc--cccccc---------cccccccccccccccccccccccccCccccccc--cccccccccccccccccccccccccc
Confidence            32  333333         333333322222233478999999999999988  477789999999863 333333    


Q ss_pred             -----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCC---ceEEEECCCCCEEEEEEcCCceeeC
Q 013871          235 -----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC---SVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       235 -----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~---~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                           |.+.+++++|+|+|++|++|+   .||.|+|||+++++++..+..+.   ...+.+.+++.+|++++.      |
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs---~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~------d  302 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA------N  302 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET------T
T ss_pred             cccccccccccccccCCCCCEEEEEe---CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEEC------C
Confidence                 567899999999999999998   56799999999999998887652   223455556678999999      9


Q ss_pred             CcEEEEeec
Q 013871          307 NGIKIFHHN  315 (434)
Q Consensus       307 ~~i~iw~~~  315 (434)
                      |.|++||.+
T Consensus       303 G~i~~wd~d  311 (311)
T d1nr0a1         303 GFINFVNPE  311 (311)
T ss_dssp             CCEEEEETT
T ss_pred             CEEEEEeCC
Confidence            999999963

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-30  Score=239.98  Aligned_cols=272  Identities=13%  Similarity=0.183  Sum_probs=211.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.+++.+.++..+.   ..+.+++|++++.+++.+. ++.+.+|+....
T Consensus        20 I~~l~~sp~~~~l~s~s-----~Dg~i~iWd~~~~~~~~~~~~h~---~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSAS-----EDATIKVWDYETGDFERTLKGHT---DSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EEEEEECSSSSEEEEEE-----SSSCEEEEETTTCCCCEEECCCS---SCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             eEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCCEEEEEeCCC---CcEEEEeeeccccccccccccccccccccccc
Confidence            78999999999999999     89999999999999999887643   6677999999999999885 468889988765


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ........+...+..+.++|++ ..++..     +.++.+++|++.+   +..+.....+......+.|+++|..|+.. 
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-  161 (317)
T d1vyhc1          92 ECIRTMHGHDHNVSSVSIMPNG-DHIVSA-----SRDKTIKMWEVQT---GYCVKTFTGHREWVRMVRPNQDGTLIASC-  161 (317)
T ss_dssp             CEEECCCCCSSCEEEEEECSSS-SEEEEE-----ETTSEEEEEETTT---CCEEEEEECCSSCEEEEEECTTSSEEEEE-
T ss_pred             ccccccccccccceeeeccCCC-ceEEee-----ccCcceeEeeccc---ceeeeEEccCCCcceeeecccCCCEEEEE-
Confidence            5433344456678889999984 444432     3457899999988   77788888888888999999999976543 


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCC--------------------EEEEEEccCCCe
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS--------------------EFAVVYGFMPAS  220 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~--------------------~~av~~g~~~~~  220 (434)
                        ..|.....|         +............+...+..++|+|++.                    .++  ++..|+.
T Consensus       162 --~~d~~v~~~---------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~  228 (317)
T d1vyhc1         162 --SNDQTVRVW---------VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL--SGSRDKT  228 (317)
T ss_dssp             --ETTSCEEEE---------ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE--EEETTSE
T ss_pred             --eCCCeEEEE---------eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE--eccCCCE
Confidence              234333322         2222211111112356778888877654                    233  5778999


Q ss_pred             EEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEE
Q 013871          221 ATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFM  295 (434)
Q Consensus       221 v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~  295 (434)
                      +.+||.+. ..+..+  |...+.+++|+|+|++|++++   .+|.|+|||+.+++.+..+.+|  .++.++|+|||++|+
T Consensus       229 i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA---DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE---TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             EEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE---CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            99999964 445554  788999999999999999998   5679999999999999988876  567799999999999


Q ss_pred             EEEcCCceeeCCcEEEEe
Q 013871          296 TATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       296 tas~~prl~~D~~i~iw~  313 (434)
                      +++.      |+.|+|||
T Consensus       306 s~s~------Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSV------DQTVKVWE  317 (317)
T ss_dssp             EEET------TSEEEEEC
T ss_pred             EEeC------CCeEEEeC
Confidence            9999      99999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.5e-30  Score=246.60  Aligned_cols=282  Identities=14%  Similarity=0.157  Sum_probs=197.4

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc---------------CCCCCCeeeecCCCcEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM---------------TKTTWPSIRFSSDEAVACR   66 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~---------------~~~~~~~~~~S~d~~~la~   66 (434)
                      |+||+|||||++|++++      |+.|+|||+.+++.+..+.....               +...+.+++|+||+++|++
T Consensus        65 V~~l~fs~dg~~lasg~------d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC------NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             CCEEEECTTSSEEEEEC------BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCEEEEEe------CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            88999999999999855      67999999999998877653311               2234668999999999998


Q ss_pred             ec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           67 MA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        67 ~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      ++ ++.|++|+............+...|..+.++++ +..++.     .+..+.+++|++..   ...+....... ...
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~-----~~~~~~i~~~d~~~---~~~~~~~~~~~-~~~  208 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVS-----GSGDRTVRIWDLRT---GQCSLTLSIED-GVT  208 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEETTT---TEEEEEEECSS-CEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccc-----cccceeeeeeeccc---ccccccccccc-ccc
Confidence            84 679999999875544444456678999999998 444432     23457899999976   44444444333 344


Q ss_pred             EEEEC-CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          146 QLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws-~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      .+.++ ++|..|+..   ..|.....|.............  .......+.++|.+++|+|+++.|+  ++..++.+.+|
T Consensus       209 ~~~~~~~~~~~l~~~---~~d~~i~i~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~--s~~~d~~i~iw  281 (388)
T d1erja_         209 TVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDS--ENESGTGHKDSVYSVVFTRDGQSVV--SGSLDRSVKLW  281 (388)
T ss_dssp             EEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEECTTSSEEE--EEETTSEEEEE
T ss_pred             cccccCCCCCeEEEE---cCCCeEEEeecccCccceeecc--ccccccCCCCCEEEEEECCCCCEEE--EEECCCcEEEE
Confidence            44454 466665432   2344333332211100000000  0011122467899999999999888  57778999999


Q ss_pred             ecccce---------------eEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEE-
Q 013871          225 NKKCRP---------------ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE-  286 (434)
Q Consensus       225 d~~~~~---------------~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~-  286 (434)
                      |++...               ....|...+.+++|+|+|++|++|+   .+|.|+|||+.+++++..+.+|  .+..++ 
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~---~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS---KDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE---TTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEe---CCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence            985221               1123678899999999999999998   5679999999999999999887  444454 


Q ss_pred             -----ECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          287 -----WSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       287 -----wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                           |+|||.+|+||+.      |+.|+||++.
T Consensus       359 ~~~~~~spd~~~l~s~s~------Dg~I~iW~~~  386 (388)
T d1erja_         359 ANGSSLGPEYNVFATGSG------DCKARIWKYK  386 (388)
T ss_dssp             CSSCTTCTTCEEEEEEET------TSEEEEEEEE
T ss_pred             ecCcccCCCCCEEEEEeC------CCEEEEEeee
Confidence                 6789999999999      9999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=4.3e-29  Score=231.45  Aligned_cols=270  Identities=13%  Similarity=0.128  Sum_probs=192.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++|+|||||++|+|++     .|+.|+|||+.+++++..+...  |...+.+++|+||+++++.+.++.+++|+.....
T Consensus        15 V~~l~~s~dg~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~   87 (299)
T d1nr0a2          15 ITALSSSADGKTLFSAD-----AEGHINSWDISTGISNRVFPDV--HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG   87 (299)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEECSSCS--CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred             cEEEEECCCCCEEEEEc-----CCCeEEEEECCCCcEEEEEcCC--CCCcEEEEEeeccceeecccceeeEEEeccCCcc
Confidence            78999999999999999     8999999999999988876433  3467779999999999998999999999976532


Q ss_pred             Cc---eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           82 KG---ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        82 ~~---~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ..   .....+...+..++++|++. .++..      ....+.+|+...     ...  .........+.|+|+++.+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~------~~~~i~~~~~~~-----~~~--~~~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          88 VDSSKAVANKLSSQPLGLAVSADGD-IAVAA------CYKHIAIYSHGK-----LTE--VPISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             SCTTSCCEEECSSCEEEEEECTTSS-CEEEE------ESSEEEEEETTE-----EEE--EECSSCEEEEEECTTSCEEEE
T ss_pred             ccccccccccccccccccccccccc-ccccc------cccccccccccc-----ccc--ccccccccccccccccccccc
Confidence            11   11223345688899999854 33321      234788888532     111  123345667899999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCccee-eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeE----
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL----  232 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~-~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~----  232 (434)
                      ..   .|..         ++.+++.+.... ...+.+..+|.+++|+|+++.++  ++..++.+.+||+... .+.    
T Consensus       154 g~---~dg~---------i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~~~~d~~i~~~~~~~~~~~~~~~~  219 (299)
T d1nr0a2         154 GG---QDSK---------VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLV--ATDQSRKVIPYSVANNFELAHTNS  219 (299)
T ss_dssp             EE---TTSE---------EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEE--EEETTSCEEEEEGGGTTEESCCCC
T ss_pred             cc---cccc---------cccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence            32   2222         333333333222 22344578999999999999988  4777899999998643 221    


Q ss_pred             -EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCE--EEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          233 -ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       233 -~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~--~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                       ..|...+++++|+|+|++|++++   .+|.|+|||++++.  .+.....+  ..+.+.+++++++|++++.      |+
T Consensus       220 ~~~h~~~v~~l~~s~~~~~l~sgs---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~------D~  290 (299)
T d1nr0a2         220 WTFHTAKVACVSWSPDNVRLATGS---LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ------DS  290 (299)
T ss_dssp             CCCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET------TS
T ss_pred             ccccccccccccccccccceEEEc---CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC------CC
Confidence             22678999999999999999999   55799999998763  22222222  3344445567889999998      99


Q ss_pred             cEEEEeec
Q 013871          308 GIKIFHHN  315 (434)
Q Consensus       308 ~i~iw~~~  315 (434)
                      .|+|||+.
T Consensus       291 ~i~iWdl~  298 (299)
T d1nr0a2         291 NIKFWNVP  298 (299)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEecc
Confidence            99999973

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=3e-28  Score=228.36  Aligned_cols=270  Identities=11%  Similarity=0.135  Sum_probs=193.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++|+|||+|++|+|++     .|+.|+|||+.+++.+..+..+.   ..+.+++|+|+++++++++ ++.+.+|+....
T Consensus        58 I~~l~~s~~~~~l~sgs-----~Dg~v~iWd~~~~~~~~~~~~~~---~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~  129 (340)
T d1tbga_          58 IYAMHWGTDSRLLVSAS-----QDGKLIIWDSYTTNKVHAIPLRS---SWVMTCAYAPSGNYVACGGLDNICSIYNLKTR  129 (340)
T ss_dssp             EEEEEECTTSSEEEEEE-----TTTEEEEEETTTTEEEEEEECSC---SCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred             EEEEEECCCCCEEEEEE-----CCCceeeeecccceeEEEEeccc---ccEEeeEeeccceeeeeecccceeeccccccc
Confidence            78999999999999999     89999999999999999887654   6677999999999999884 679999997664


Q ss_pred             CCceeee--ee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeE
Q 013871           81 PKGILYR--LR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGL  156 (434)
Q Consensus        81 ~~~~~~~--~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l  156 (434)
                      .......  +.  ...........+  ..+...     ........+....   .............+....+.+.+..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (340)
T d1tbga_         130 EGNVRVSRELAGHTGYLSCCRFLDD--NQIVTS-----SGDTTCALWDIET---GQQTTTFTGHTGDVMSLSLAPDTRLF  199 (340)
T ss_dssp             CSCCCEEEEECCCSSCEEEEEEEET--TEEEEE-----ETTTEEEEEETTT---TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccceecccccccccccccccc--cccccc-----ccccccccccccc---ccccccccccceeEeeecccccccee
Confidence            3221111  11  112222222222  222221     1223445555544   33444444455566777888887765


Q ss_pred             EEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe
Q 013871          157 LAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL  234 (434)
Q Consensus       157 ~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~  234 (434)
                      +..   ..|..         +..+++... .....+ .+.++|.+++|+|+++.|+  +|..++.+.+||++... +..+
T Consensus       200 ~~~---~~d~~---------v~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~~~~l~--s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         200 VSG---ACDAS---------AKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFA--TGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             EEE---ETTTE---------EEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEEEE
T ss_pred             EEe---ecCce---------EEEEECCCC-cEEEEEeCCCCCeEEEEECCCCCEEE--EEeCCCeEEEEeeccccccccc
Confidence            432   23333         333333333 222222 3578999999999999988  57789999999997443 3333


Q ss_pred             ----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCc
Q 013871          235 ----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG  308 (434)
Q Consensus       235 ----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~  308 (434)
                          +...++++.|+|+|++|++|+   .+|.|+|||+.+++.+..+.+|  .+..++|+|||++|++++.      |+.
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~---~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~------Dg~  335 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGY---DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW------DSF  335 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEE---TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET------TSC
T ss_pred             ccccccCceEEEEECCCCCEEEEEE---CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEcc------CCE
Confidence                456789999999999999998   5679999999999999999876  5667999999999999999      999


Q ss_pred             EEEEe
Q 013871          309 IKIFH  313 (434)
Q Consensus       309 i~iw~  313 (434)
                      |+|||
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-26  Score=217.95  Aligned_cols=272  Identities=10%  Similarity=0.108  Sum_probs=200.2

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceee-e----eecCCeeEEEEeCCCCCeEEEEec
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILY-R----LRVPGVAAFEVSKAPGSHVAVFVP  111 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~-~----~~~~~v~~~~~sp~~~~~ia~~~~  111 (434)
                      +.++++.    |...+.+++|||||++|++++++.|+|||+......... .    .+...|.+++|+|+ +..+++   
T Consensus        43 ~~~~~~~----H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d-g~~l~s---  114 (337)
T d1gxra_          43 RQINTLN----HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD-GCTLIV---  114 (337)
T ss_dssp             EEEEEEC----CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT-SSEEEE---
T ss_pred             eEEEECC----CCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC-CCEEEE---
Confidence            4455552    337788999999999999999999999998764332211 1    22346999999999 455553   


Q ss_pred             CCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee
Q 013871          112 ESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP  191 (434)
Q Consensus       112 ~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~  191 (434)
                        .+.++.|++|++.... .........+...+..+.|+|++..++...   .|..         +..++..........
T Consensus       115 --~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~---------i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         115 --GGEASTLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCC---SDGN---------IAVWDLHNQTLVRQF  179 (337)
T ss_dssp             --EESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEE---TTSC---------EEEEETTTTEEEEEE
T ss_pred             --eecccccccccccccc-cccccccccccccccccccccccccccccc---cccc---------ccccccccccccccc
Confidence              2456799999987632 334455556677788899999998765431   3333         333343333233333


Q ss_pred             cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          192 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       192 l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ..+..+|.+++|+|++..+++  +..++.+.+||++. +.+..+ +...+++++|+|++++|++++   .+|.|++||++
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~--~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~---~d~~i~i~d~~  254 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWT--GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVN  254 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEETT
T ss_pred             ccccccccccccccccccccc--ccccccccccccccceeecccccccceEEEEEcccccccceec---ccccccccccc
Confidence            345789999999999998884  67789999999964 444444 678999999999999999998   56799999999


Q ss_pred             CCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee-ecccceeeEEEcCCCCCCCC
Q 013871          270 DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK-MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       270 ~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~-~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+......+. .+..++|+|||++|++++.      |+.|+||++. |+.+... +...+..++|+|++..|+..
T Consensus       255 ~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~------Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~  324 (337)
T d1gxra_         255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGK------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTG  324 (337)
T ss_dssp             SSCEEEECCCSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEE
T ss_pred             ccccccccccccccceEEECCCCCEEEEEeC------CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEE
Confidence            88776555443 5667999999999999999      9999999984 5555443 45679999999998877664

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=8.4e-26  Score=211.56  Aligned_cols=241  Identities=16%  Similarity=0.214  Sum_probs=182.7

Q ss_pred             CCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           52 WPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        52 ~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      ...++++|+|+.|+.+.++.|.+|++.+.........|...|.+++|||+ +.++++     ++.++.|+||++..   .
T Consensus        20 ~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~-g~~lat-----g~~dg~i~iwd~~~---~   90 (311)
T d1nr0a1          20 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPS-GYYCAS-----GDVHGNVRIWDTTQ---T   90 (311)
T ss_dssp             CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTT-SSEEEE-----EETTSEEEEEESSS---T
T ss_pred             eEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCC-CCeEec-----cccCceEeeeeeec---c
Confidence            33789999999999999899999999887655555667788999999998 566664     35568999999987   3


Q ss_pred             Cce--eeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCC
Q 013871          132 QPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGS  208 (434)
Q Consensus       132 ~~i--~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~  208 (434)
                      ..+  .....|...+..+.|+|+|+.+++.. .+.+....       ++.++  .. .....+ .+...|.+++|+|++.
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~-~~~~~~~~-------v~~~~--~~-~~~~~l~~h~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVG-EGRERFGH-------VFLFD--TG-TSNGNLTGQARAMNSVDFKPSRP  159 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEE-CCSSCSEE-------EEETT--TC-CBCBCCCCCSSCEEEEEECSSSS
T ss_pred             ccccccccccccCcccccccccccccccccc-cccccccc-------ccccc--cc-cccccccccccccccccccccce
Confidence            333  34556778889999999999876542 22222222       33332  21 111222 2467899999999998


Q ss_pred             EEEEEEccCCCeEEEEeccccee-EEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC------
Q 013871          209 EFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA------  279 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~~~-~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~------  279 (434)
                      .+++ +|..++.|.+||++.... ..+  |..+++++.|+|+|++|++++   .+|.|.+||..+++.+..+..      
T Consensus       160 ~~l~-sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~---~d~~v~~~d~~~~~~~~~~~~~~~~~~  235 (311)
T d1nr0a1         160 FRII-SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG---GDGTIVLYNGVDGTKTGVFEDDSLKNV  235 (311)
T ss_dssp             CEEE-EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             eeec-ccccccccccccccccccccccccccccccccccCcccccccccc---ccccccccccccccccccccccccccc
Confidence            7544 688899999999975443 333  678999999999999999998   567999999999887776643      


Q ss_pred             -C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          280 -E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       280 -~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                       |  .+..++|+|||++|++++.      |+.|+|||+ +++++...
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~------Dg~v~iwd~~t~~~~~~l  276 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASA------DKTIKIWNVATLKVEKTI  276 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEE
T ss_pred             cccccccccccCCCCCEEEEEeC------CCeEEEEECCCCcEEEEE
Confidence             2  4667999999999999999      999999998 45565544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=3.8e-26  Score=218.98  Aligned_cols=285  Identities=13%  Similarity=0.076  Sum_probs=188.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTT   78 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~   78 (434)
                      |+|++|||||++|++++     .|+.|+|||+.+++  .+..+..   |...+.+++|+||+++|++++ |++|+||++.
T Consensus        10 It~~~~s~dg~~la~~~-----~~~~i~iw~~~~~~~~~~~~l~g---H~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICP-----NNHEVHIYEKSGNKWVQVHELKE---HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CCEEEECTTSSEEEEEC-----SSSEEEEEEEETTEEEEEEEEEC---CSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEECCCCCEEEEEEecC---CCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence            78999999999999988     78999999998876  3455544   346788999999999999885 6799999987


Q ss_pred             CCCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc--eeeeeecccceeEEEECCCCC
Q 013871           79 DFPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP--LARRSFFRCSTVQLNWNRGST  154 (434)
Q Consensus        79 ~~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~--i~~~~~~~~~~~~~~ws~~G~  154 (434)
                      .........  .+...|.++.|+|+ +..+++-     +..+.+++|++.... ...  ......+...+.++.|+|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~-----s~d~~i~i~~~~~~~-~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          82 GRTWKPTLVILRINRAARCVRWAPN-EKKFAVG-----SGSRVISICYFEQEN-DWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTT-SSEEEEE-----ETTSSEEEEEEETTT-TEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ccccccccccccccccccccccccc-cccceee-----cccCcceeeeeeccc-cccccccccccccccccccccccccc
Confidence            643222222  23456999999998 4555542     345689999887632 111  122234567788999999999


Q ss_pred             eEEEEEEecccccCceeecceeEE--EE-----eeCC-cceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLN--YL-----TTDG-THEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~--~l-----~~~~-~~~~~v-~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      .|+..   ..|.+.+.|.......  ..     .... ...... ...+.+.|++++|+|+|+.++  ++..|+.+.+||
T Consensus       155 ~l~s~---s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~--s~~~d~~i~iwd  229 (371)
T d1k8kc_         155 LLAAG---SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA--WVSHDSTVCLAD  229 (371)
T ss_dssp             EEEEE---ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE--EEETTTEEEEEE
T ss_pred             ceecc---ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc--ccccCCcceEEe
Confidence            86542   2455554432110000  00     0000 001111 122467899999999999988  466789999999


Q ss_pred             cc-cceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE--EccCCEEEEEe-----------------------
Q 013871          226 KK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW--DYVDGKQLGTT-----------------------  277 (434)
Q Consensus       226 ~~-~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw--d~~~~~~i~~~-----------------------  277 (434)
                      +. ...+..+  +..++++++|+|+|++|++|.    ++.+.+|  |...++.....                       
T Consensus       230 ~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (371)
T d1k8kc_         230 ADKKMAVATLASETLPLLAVTFITESSLVAAGH----DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD  305 (371)
T ss_dssp             GGGTTEEEEEECSSCCEEEEEEEETTEEEEEET----TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred             eecccceeeeecccccceeeeecCCCCEEEEEc----CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEeccc
Confidence            96 3444444  678999999999999887653    2345554  43332221100                       


Q ss_pred             ----------------eCC--CceEEEECCCC----CEEEEEEcCCceeeCCcEEEEeecC
Q 013871          278 ----------------RAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       278 ----------------~~~--~~~~~~wspdg----~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                                      ..|  .+..+++.|++    ..|+|++.      |+.|+||+++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~------Dg~v~iW~~~~  360 (371)
T d1k8kc_         306 KKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGM------DGGMSIWDVRS  360 (371)
T ss_dssp             CCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEET------TSEEEEEEHHH
T ss_pred             ceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcC------CCeEEEEeCCc
Confidence                            012  34457887755    35889998      99999999854

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.3e-24  Score=201.65  Aligned_cols=277  Identities=12%  Similarity=0.082  Sum_probs=189.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCC-CcEEEEEcCCC--cEEEEEeecCcCCCCCCeeeecC--CCcEEEEec-CCeEEEE
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQE-KNVILWKTETG--EAVYQLFQKNMTKTTWPSIRFSS--DEAVACRMA-TNEIQFF   75 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d-~~v~iWd~~~g--~~~~~~~~~~~~~~~~~~~~~S~--d~~~la~~~-~~~i~v~   75 (434)
                      +.+|+|+|+|+.|+...     .+ ..|+.|+....  ..+..+.++.  ...+.+++|+|  |+++||++. |++|+||
T Consensus        20 ~t~l~~~~~~~~la~~~-----~~~~~i~~~~~~~~~~~~~~~~~gh~--~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW   92 (325)
T d1pgua1          20 TTHLSYDPTTNAIAYPC-----GKSAFVRCLDDGDSKVPPVVQFTGHG--SSVVTTVKFSPIKGSQYLCSGDESGKVIVW   92 (325)
T ss_dssp             CCCCEEETTTTEEEEEE-----TTEEEEEECCSSCCSSCSEEEECTTT--TSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             eEEEEECCCCCEEEEEe-----CCCEEEEEEeCCCCCccceEEEeCCC--CCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence            46899999999999876     22 23556665433  3355665542  25677999998  678999884 6899999


Q ss_pred             eCCCCCCcee--------eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEE
Q 013871           76 DTTDFPKGIL--------YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQL  147 (434)
Q Consensus        76 ~~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~  147 (434)
                      |.........        ...+...|.+++|+|+ +..+++..   .+....+.+|+...   ++.+.....|...+..+
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~---~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~  165 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE-GRRLCVVG---EGRDNFGVFISWDS---GNSLGEVSGHSQRINAC  165 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT-SSEEEEEE---CCSSCSEEEEETTT---CCEEEECCSCSSCEEEE
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCC-CCccceee---ccccceEEEEeecc---cccceeeeecccccccc
Confidence            9854322111        1223456899999998 45554432   24456788999877   77788888888888999


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeee--cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~--l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      .|+|++..+++.++  .|.....|..         .... .....  ..+...|.+++|+|++..+++ ++..|+.|.+|
T Consensus       166 ~~~~~~~~~~~~~~--~d~~v~~~d~---------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~-s~~~d~~i~iw  233 (325)
T d1pgua1         166 HLKQSRPMRSMTVG--DDGSVVFYQG---------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI-TVGSDRKISCF  233 (325)
T ss_dssp             EECSSSSCEEEEEE--TTTEEEEEET---------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE-EEETTCCEEEE
T ss_pred             cccccccceEEEee--cccccccccc---------cccccceecccccCCCCccEEeeeccccceecc-ccccccceeee
Confidence            99999988665433  3333333322         1111 11111  123678999999998654443 57779999999


Q ss_pred             eccc-ceeEEe--CCcCeeEEEEC---CCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC--C--ceE--EEECCCCC
Q 013871          225 NKKC-RPILEL--GSGPYNTVRWN---PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C--SVT--SEWSPDGR  292 (434)
Q Consensus       225 d~~~-~~~~~~--~~~~~~~i~~S---P~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~--~~~--~~wspdg~  292 (434)
                      |++. ..+..+  |..++..+.|+   |+|++|++++   .||.|+|||+++++.+..+..+  .  ...  +.|++++ 
T Consensus       234 d~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  309 (325)
T d1pgua1         234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG---ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG-  309 (325)
T ss_dssp             ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE---TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT-
T ss_pred             eeccccccccccccccccccceeeeeccCCCEEEEEe---CCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCC-
Confidence            9864 444555  56666666665   7899999998   5679999999999998877654  1  222  5555544 


Q ss_pred             EEEEEEcCCceeeCCcEEEEee
Q 013871          293 YFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       293 ~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +|++++.      |+.|+|||+
T Consensus       310 ~l~s~s~------dg~i~vwdl  325 (325)
T d1pgua1         310 RIISLSL------DGTLNFYEL  325 (325)
T ss_dssp             EEEEEET------TSCEEEEET
T ss_pred             EEEEEEC------CCEEEEEEC
Confidence            7889998      999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.1e-23  Score=194.50  Aligned_cols=268  Identities=13%  Similarity=0.144  Sum_probs=183.9

Q ss_pred             CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceee-eeecCCeeEEEEeCCCCCeEEEEecCC
Q 013871           36 GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILY-RLRVPGVAAFEVSKAPGSHVAVFVPES  113 (434)
Q Consensus        36 g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~ia~~~~~~  113 (434)
                      |+..+.+.+|   ...+.+++|+||+++|+++ .|+.|++||+.+....... ..|...|.+++|+|++ .++++     
T Consensus         2 g~~~~~~~GH---~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~-----   72 (299)
T d1nr0a2           2 GSIDQVRYGH---NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTV-----   72 (299)
T ss_dssp             TEEEEEECCC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEE-----
T ss_pred             CccceEcCCC---CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecc-----
Confidence            4555666554   4788899999999999998 4679999999875432222 2345679999999984 44443     


Q ss_pred             CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC
Q 013871          114 KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR  193 (434)
Q Consensus       114 ~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~  193 (434)
                       +.++.+++|++..............+......+.|+++|+.++...    +..         +..++. +   ....+.
T Consensus        73 -~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~----~~~---------i~~~~~-~---~~~~~~  134 (299)
T d1nr0a2          73 -SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC----YKH---------IAIYSH-G---KLTEVP  134 (299)
T ss_dssp             -ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE----SSE---------EEEEET-T---EEEEEE
T ss_pred             -cceeeEEEeccCCccccccccccccccccccccccccccccccccc----ccc---------cccccc-c---cccccc
Confidence             3457899999865321222223334556677899999998765431    111         222221 1   111122


Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE----eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEcc
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE----LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV  269 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~----~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~  269 (434)
                      ....+..++|+|+++.|+  +|..++.+.+||++......    .|...+++++|+|+|++|++++   .+|.|++||+.
T Consensus       135 ~~~~~~~~~~s~~~~~l~--~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~  209 (299)
T d1nr0a2         135 ISYNSSCVALSNDKQFVA--VGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD---QSRKVIPYSVA  209 (299)
T ss_dssp             CSSCEEEEEECTTSCEEE--EEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTSCEEEEEGG
T ss_pred             cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccc
Confidence            245778999999999988  47789999999997554332    2788999999999999999998   56799999998


Q ss_pred             CCEEEEE---eeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-e--eeee---ecccceeeEEEcCCCC
Q 013871          270 DGKQLGT---TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-L--FFKK---MFDKLFQAEWKPVSPD  338 (434)
Q Consensus       270 ~~~~i~~---~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~--~~~~---~~~~~~~~~w~p~~~~  338 (434)
                      ++..+..   +..|  .+..++|+|+|++|++++.      |+.|+||++... .  +...   ....+..+.|.+. ..
T Consensus       210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  282 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL------DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE-TT  282 (299)
T ss_dssp             GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET------TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEET-TE
T ss_pred             ccccccccccccccccccccccccccccceEEEcC------CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCC-CE
Confidence            7755433   3333  5667999999999999999      999999998542 2  1111   2234666777654 45


Q ss_pred             CCCC
Q 013871          339 KFGD  342 (434)
Q Consensus       339 ~~~~  342 (434)
                      +++.
T Consensus       283 l~s~  286 (299)
T d1nr0a2         283 IVSA  286 (299)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-23  Score=197.52  Aligned_cols=289  Identities=10%  Similarity=0.089  Sum_probs=186.6

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |+|++  ++|++|+|++     .|++|+|||+.+++++.++..+.   ..+.+++|++++.++..+.|+.|++|+.....
T Consensus        16 itc~~--~~~~~l~tgs-----~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2          16 ITCLQ--FEDNYVITGA-----DDKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGGILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             EEEEE--EETTEEEEEE-----TTTEEEEEETTTTEEEEEEECCS---SCEEEEEEETTTEEEEEETTCCEEEEETTTTE
T ss_pred             EEEEE--ECCCEEEEEe-----CCCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCCCEEEEEecccccccccccccc
Confidence            45555  5689999999     89999999999999999987754   67779999997654444568899999987744


Q ss_pred             CceeeeeecC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc-----------------
Q 013871           82 KGILYRLRVP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC-----------------  142 (434)
Q Consensus        82 ~~~~~~~~~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~-----------------  142 (434)
                      ..........  ......++++ ...++.     .+.++.|++|++...   ..+........                 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~d~~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d1nexb2          86 CTHVFEGHNSTVRCLDIVEYKN-IKYIVT-----GSRDNTLHVWKLPKE---SSVPDHGEEHDYPLVFHTPEENPYFVGV  156 (355)
T ss_dssp             EEEEECCCSSCEEEEEEEEETT-EEEEEE-----EETTSEEEEEECCC--------------CCCEEESCTTTCTTEEEE
T ss_pred             cccccccccccccccccccccc-cceeee-----ecCCCcEEEEEccCC---ceeccccccceeccceeccccccceeee
Confidence            3222122222  2333455555 333333     234578999998762   22211110000                 


Q ss_pred             ----ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          143 ----STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       143 ----~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                          ......+.++|+.++..   ..|.         .+...+................+..+.|+|++..++  .+..+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~~~---~~d~---------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d  222 (355)
T d1nexb2         157 LRGHMASVRTVSGHGNIVVSG---SYDN---------TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI--SASMD  222 (355)
T ss_dssp             EECCSSCEEEEEEETTEEEEE---ETTS---------CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEE--EEETT
T ss_pred             eeeccccccccccccceeeee---cccc---------eeeeeecccccceeeeeccccccccccccccceeee--ccccc
Confidence                00112233344433221   1222         233333333322222233467889999999999988  46778


Q ss_pred             CeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE-EEECCCCCEE
Q 013871          219 ASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT-SEWSPDGRYF  294 (434)
Q Consensus       219 ~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~-~~wspdg~~l  294 (434)
                      +.+++||.+. ..+..+  |...++++.|+|  ++|++++   .+|.|++||++++..........+.. ..+++++++|
T Consensus       223 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l  297 (355)
T d1nexb2         223 TTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAA---ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL  297 (355)
T ss_dssp             SCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEEC---TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEE
T ss_pred             ceEEeeecccccccccccccccccccccccc--ceeeeee---cccccccccccccceecccccCCceEEEEEcCCCCEE
Confidence            9999999964 334444  688899999975  6898888   66799999999887666555555444 5678888876


Q ss_pred             EEEEcCCceeeCCcEEEEee-cCceeeee---ecccceeeEEEcC
Q 013871          295 MTATTAPRLQIDNGIKIFHH-NGSLFFKK---MFDKLFQAEWKPV  335 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~-~g~~~~~~---~~~~~~~~~w~p~  335 (434)
                      +++ .      |+.|+|||+ +|+++...   +.+.++.++|+|+
T Consensus       298 ~~g-~------d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         298 VSG-S------ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EEE-E------TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT
T ss_pred             EEE-e------CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC
Confidence            665 5      899999998 47776542   4467999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.9e-23  Score=192.24  Aligned_cols=269  Identities=11%  Similarity=0.109  Sum_probs=199.7

Q ss_pred             EEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCC
Q 013871           39 VYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSP  117 (434)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~  117 (434)
                      .+.+.+|   ...+.+++|+||+++|++++ |++|+|||+.+.........+...|.++.|+|+ +..++...     ..
T Consensus        10 ~~~L~GH---~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~-----~~   80 (317)
T d1vyhc1          10 KYALSGH---RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCS-----AD   80 (317)
T ss_dssp             SCEEECC---SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEE-----TT
T ss_pred             cEEEcCC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecc-cccccccc-----cc
Confidence            3455554   37788999999999999985 689999999887665555667778999999998 55555432     22


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCC
Q 013871          118 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP  197 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~  197 (434)
                      ..+.+|+...   .........+......+.|++++..++...   .|....         .+++...........+...
T Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~---------~~~~~~~~~~~~~~~~~~~  145 (317)
T d1vyhc1          81 MTIKLWDFQG---FECIRTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIK---------MWEVQTGYCVKTFTGHREW  145 (317)
T ss_dssp             SCCCEEETTS---SCEEECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEE---------EEETTTCCEEEEEECCSSC
T ss_pred             cccccccccc---cccccccccccccceeeeccCCCceEEeec---cCccee---------EeecccceeeeEEccCCCc
Confidence            3556777665   555555666777888999999999876432   333322         2333332222222234678


Q ss_pred             eEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCC--------------------CeEEEE
Q 013871          198 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKG--------------------KFLCLA  254 (434)
Q Consensus       198 i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g--------------------~~l~~~  254 (434)
                      +..++|+|++..|+  ++..++.+.+|+... ..+..+  +...+.++.|+|++                    .+++++
T Consensus       146 ~~~~~~~~~~~~l~--~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         146 VRMVRPNQDGTLIA--SCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEEECTTSSEEE--EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             ceeeecccCCCEEE--EEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec
Confidence            99999999999988  577899999999864 334444  56778888888764                    457777


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee--eccccee
Q 013871          255 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK--MFDKLFQ  329 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~--~~~~~~~  329 (434)
                      +   .+|.|++||+.+++.+..+.+|  .+..++|+|+|++|++++.      |+.|+|||+. ++++...  +...+..
T Consensus       224 ~---~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~h~~~V~~  294 (317)
T d1vyhc1         224 S---RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD------DKTLRVWDYKNKRCMKTLNAHEHFVTS  294 (317)
T ss_dssp             E---TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET------TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred             c---CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC------CCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence            7   5679999999999999998876  5566999999999999999      9999999994 5655554  4568999


Q ss_pred             eEEEcCCCCCCCC
Q 013871          330 AEWKPVSPDKFGD  342 (434)
Q Consensus       330 ~~w~p~~~~~~~~  342 (434)
                      ++|+|++..+++.
T Consensus       295 ~~~s~~~~~l~s~  307 (317)
T d1vyhc1         295 LDFHKTAPYVVTG  307 (317)
T ss_dssp             EEECSSSSCEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            9999998887765

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.7e-23  Score=197.79  Aligned_cols=278  Identities=12%  Similarity=0.154  Sum_probs=190.2

Q ss_pred             CCCcEEEEEcCCCcEEE-EEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeee---------------
Q 013871           24 QEKNVILWKTETGEAVY-QLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYR---------------   87 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~-~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~---------------   87 (434)
                      .++.+.+|+....+.+. .+...-.|...|.+++|||||++||++.|+.|+||++.+........               
T Consensus        36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (388)
T d1erja_          36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS  115 (388)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC--------------
T ss_pred             CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccc
Confidence            46778999976554321 11111114478889999999999999999999999987644321111               


Q ss_pred             ---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecc
Q 013871           88 ---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV  164 (434)
Q Consensus        88 ---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~  164 (434)
                         .+...|.+++|+|+ +.++++     ++.++.|++|+...   .+.+.....+...+..+.|++++..++...   .
T Consensus       116 ~~~~~~~~V~~l~~s~~-~~~l~s-----~~~dg~v~i~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~---~  183 (388)
T d1erja_         116 SSPSSDLYIRSVCFSPD-GKFLAT-----GAEDRLIRIWDIEN---RKIVMILQGHEQDIYSLDYFPSGDKLVSGS---G  183 (388)
T ss_dssp             ---CCCCBEEEEEECTT-SSEEEE-----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEECTTSSEEEEEE---T
T ss_pred             cccCCCCCEEEEEECCC-CCccee-----cccccccccccccc---cccccccccccccccccccccccccccccc---c
Confidence               12235889999998 555554     34567899999987   777888888888999999999998865432   2


Q ss_pred             cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccc-eeEEe--------
Q 013871          165 DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL--------  234 (434)
Q Consensus       165 d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~-~~~~~--------  234 (434)
                      +..         +..++.... ..............+.|+| +++.|+  ++..++.+.+||.+.. .+..+        
T Consensus       184 ~~~---------i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~  251 (388)
T d1erja_         184 DRT---------VRIWDLRTG-QCSLTLSIEDGVTTVAVSPGDGKYIA--AGSLDRAVRVWDSETGFLVERLDSENESGT  251 (388)
T ss_dssp             TSE---------EEEEETTTT-EEEEEEECSSCEEEEEECSTTCCEEE--EEETTSCEEEEETTTCCEEEEEC------C
T ss_pred             cee---------eeeeecccc-ccccccccccccccccccCCCCCeEE--EEcCCCeEEEeecccCccceeecccccccc
Confidence            222         233333332 2222222344556666665 667776  5777899999998633 22222        


Q ss_pred             -CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE------------EEEeeCC--CceEEEECCCCCEEEEEEc
Q 013871          235 -GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------LGTTRAE--CSVTSEWSPDGRYFMTATT  299 (434)
Q Consensus       235 -~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~------------i~~~~~~--~~~~~~wspdg~~l~tas~  299 (434)
                       |...++++.|+|+|++|++++   .+|.|++||+.+++.            ......|  .+..++|+|+|++|++++.
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGS---LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEE---TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             CCCCCEEEEEECCCCCEEEEEE---CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence             567899999999999999998   567999999876532            2222222  5567999999999999999


Q ss_pred             CCceeeCCcEEEEee-cCceeeee--ecccceeeEEEc
Q 013871          300 APRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKP  334 (434)
Q Consensus       300 ~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p  334 (434)
                            |+.|+|||+ +|+++...  +...+..+.|.+
T Consensus       329 ------dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~  360 (388)
T d1erja_         329 ------DRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN  360 (388)
T ss_dssp             ------TSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred             ------CCEEEEEECCCCcEEEEEeCCCCCEEEEEEec
Confidence                  999999998 46666544  456677776644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-22  Score=189.71  Aligned_cols=273  Identities=12%  Similarity=0.064  Sum_probs=188.4

Q ss_pred             cEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCC
Q 013871           37 EAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKG  115 (434)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~  115 (434)
                      +..+++.+|   ...+.+++|+||+++||+++ |++|+|||..+.........+...|.+++|+|+ +.++++.     +
T Consensus        46 ~~~~tL~GH---~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~l~~~-----~  116 (340)
T d1tbga_          46 RTRRTLRGH---LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-GNYVACG-----G  116 (340)
T ss_dssp             CEEEEECCC---SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTT-SSEEEEE-----E
T ss_pred             eeeEEECCC---CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecc-ceeeeee-----c
Confidence            345666554   47788999999999999985 689999999876554445556678999999998 4555542     4


Q ss_pred             CCceEEEEEcCCCCC-CCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC
Q 013871          116 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       116 ~~~~v~i~~~~~~~~-~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      .++.+.+|+...... .........+........+..+ ..+... .  .|...         .................
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~~~---------~~~~~~~~~~~~~~~~~  183 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS-S--GDTTC---------ALWDIETGQQTTTFTGH  183 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEE-E--TTTEE---------EEEETTTTEEEEEEECC
T ss_pred             ccceeecccccccccccccceecccccccccccccccc-cccccc-c--ccccc---------ccccccccccccccccc
Confidence            456889999765321 1112222222222222222222 222111 1  11111         11111111122222233


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ...+....+.+.+..++  +|..++.+.+||++. ..+..+  |...+++++|+|+|++|++++   .+|.|++||+...
T Consensus       184 ~~~~~~~~~~~~~~~~~--~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s---~d~~i~~~~~~~~  258 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFV--SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRAD  258 (340)
T ss_dssp             SSCEEEEEECTTSSEEE--EEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTTT
T ss_pred             ceeEeeeccccccceeE--EeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEe---CCCeEEEEeeccc
Confidence            67888999999988887  578899999999964 444444  688999999999999999998   5679999999998


Q ss_pred             EEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccceeeEEEcCCCCCCCC
Q 013871          272 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       272 ~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~~~~w~p~~~~~~~~  342 (434)
                      +.+..+...    .+..++|+|+|++|++++.      |+.|+|||+ +++++...  +...+..++|.|++..+++.
T Consensus       259 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYD------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EEEEEECCTTCCSCEEEEEECSSSCEEEEEET------TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ccccccccccccCceEEEEECCCCCEEEEEEC------CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            877766432    4567999999999999999      999999998 56666554  45689999999998887764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.7e-23  Score=197.58  Aligned_cols=281  Identities=10%  Similarity=0.009  Sum_probs=189.2

Q ss_pred             cceEEecC-CCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C--CeEEEEeC
Q 013871            2 LLLLTCLR-VGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T--NEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP-~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~--~~i~v~~~   77 (434)
                      +.+-.||| ||+++++.+      ++.|.|||+.++..++ +.    |...+.+++|||||++|++++ +  +.|++|+.
T Consensus         5 ~~~~~fSP~dG~~~a~~~------~g~v~v~d~~~~~~~~-~~----~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~   73 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLK-VP----EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY   73 (360)
T ss_dssp             GGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEE-CS----CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET
T ss_pred             hhcccccCCCCCEEEEEE------CCeEEEEECCCCcEEE-cc----CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC
Confidence            35678999 999999987      4689999998887654 32    236677999999999998764 3  27999999


Q ss_pred             CCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEE
Q 013871           78 TDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLL  157 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~  157 (434)
                      ..... .....+...+..++|||+ +..+++.     +....+.+|++..   .........+......+.|+|+|++|+
T Consensus        74 ~~~~~-~~~~~~~~~v~~~~~spd-g~~l~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~~la  143 (360)
T d1k32a3          74 RTGKA-EKFEENLGNVFAMGVDRN-GKFAVVA-----NDRFEIMTVDLET---GKPTVIERSREAMITDFTISDNSRFIA  143 (360)
T ss_dssp             TTCCE-EECCCCCCSEEEEEECTT-SSEEEEE-----ETTSEEEEEETTT---CCEEEEEECSSSCCCCEEECTTSCEEE
T ss_pred             CCCcE-EEeeCCCceEEeeeeccc-cccccee-----ccccccccccccc---cceeeeeecccccccchhhccceeeee
Confidence            87442 333445667999999999 5556543     3446899999987   666666667777788899999999987


Q ss_pred             EEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc--------
Q 013871          158 AVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--------  229 (434)
Q Consensus       158 ~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~--------  229 (434)
                      +........  ........++.++..+. ...........+..++|+|||+.|++  +..++.+.+||....        
T Consensus       144 ~~~~~~~~~--~~~~~~~~~~v~d~~~~-~~~~~~~~~~~~~~~~~spdg~~l~~--~s~~~~~~~~d~~~~~~~~~~~~  218 (360)
T d1k32a3         144 YGFPLKHGE--TDGYVMQAIHVYDMEGR-KIFAATTENSHDYAPAFDADSKNLYY--LSYRSLDPSPDRVVLNFSFEVVS  218 (360)
T ss_dssp             EEEEECSST--TCSCCEEEEEEEETTTT-EEEECSCSSSBEEEEEECTTSCEEEE--EESCCCCCEECSSSSCEECCSCB
T ss_pred             eeccccccc--eeeccccceeeeccccC-ceeeecccccccccccccCCCCEEEE--EeCCCceEcccccccceeecccc
Confidence            654332111  11112234556666554 33333444677889999999999985  455667777764211        


Q ss_pred             eeE--EeC------------------------------------CcCeeEEEECCCCCeEEEEe----------cCCCCC
Q 013871          230 PIL--ELG------------------------------------SGPYNTVRWNPKGKFLCLAG----------FGNLPG  261 (434)
Q Consensus       230 ~~~--~~~------------------------------------~~~~~~i~~SP~g~~l~~~~----------~~~~~g  261 (434)
                      ...  .++                                    .+....+...+++..++...          .+..++
T Consensus       219 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (360)
T d1k32a3         219 KPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG  298 (360)
T ss_dssp             EEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCE
T ss_pred             ceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCC
Confidence            010  011                                    11222334444333322211          112468


Q ss_pred             eEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          262 DMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       262 ~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .|++||+++++......  .+..++|||||++|++++.      |+.|++|++..
T Consensus       299 ~i~~~d~~~~~~~~~~~--~v~~~~~SpDG~~l~~~~~------Dg~i~v~d~~~  345 (360)
T d1k32a3         299 VLLKYDVKTRKVTEVKN--NLTDLRLSADRKTVMVRKD------DGKIYTFPLEK  345 (360)
T ss_dssp             EEEEEETTTCCEEEEEE--EEEEEEECTTSCEEEEEET------TSCEEEEESSC
T ss_pred             EEEEEECCCCeEEEecC--CcCEEEECCCCCEEEEEEC------CCeEEEEECCC
Confidence            99999999886543322  4667999999999999999      99999999954

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-23  Score=201.35  Aligned_cols=238  Identities=9%  Similarity=0.106  Sum_probs=171.1

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCcee--eeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGIL--YRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +.+.|++||||+++||++. ++.|+||+.........  .+.|...|.+++|+|+ +.+++..     +.++.|+||++.
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~-~~~l~s~-----s~D~~i~vWd~~   81 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SNRIVTC-----GTDRNAYVWTLK   81 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETT-TTEEEEE-----ETTSCEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCC-CCEEEEE-----ECCCeEEEEeec
Confidence            6788999999999999885 57999999865432122  3345668999999998 4555542     456799999997


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeee--ecCCCCCeEEEEEC
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PLRKEGPVHDVQWS  204 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v--~l~~~~~i~~v~ws  204 (434)
                      ... .........+...+.++.|+|+|+.+++..   .|.+.+       ++.++.........  .-.+.+.|.+++|+
T Consensus        82 ~~~-~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s---~d~~i~-------i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~  150 (371)
T d1k8kc_          82 GRT-WKPTLVILRINRAARCVRWAPNEKKFAVGS---GSRVIS-------ICYFEQENDWWVCKHIKKPIRSTVLSLDWH  150 (371)
T ss_dssp             TTE-EEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEE-------EEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             ccc-cccccccccccccccccccccccccceeec---ccCcce-------eeeeeccccccccccccccccccccccccc
Confidence            621 122333445667788999999999876542   333333       34443322211111  11246789999999


Q ss_pred             cCCCEEEEEEccCCCeEEEEecccc-------------------eeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeE
Q 013871          205 YSGSEFAVVYGFMPASATIFNKKCR-------------------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM  263 (434)
Q Consensus       205 pdg~~~av~~g~~~~~v~l~d~~~~-------------------~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i  263 (434)
                      |+++.|+  +|..|+.+++||....                   .+...  |...+++++|+|+|++|++++   .+|.|
T Consensus       151 p~~~~l~--s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~d~~i  225 (371)
T d1k8kc_         151 PNSVLLA--AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS---HDSTV  225 (371)
T ss_dssp             TTSSEEE--EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE---TTTEE
T ss_pred             cccccee--ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc---cCCcc
Confidence            9999988  5778999999986421                   12222  567789999999999999998   56799


Q ss_pred             EEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          264 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       264 ~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      .+||+.+++.+..+..+  .+..++|+|||++|++| .      |+.+++|.++.
T Consensus       226 ~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~------d~~~~~~~~~~  273 (371)
T d1k8kc_         226 CLADADKKMAVATLASETLPLLAVTFITESSLVAAG-H------DCFPVLFTYDS  273 (371)
T ss_dssp             EEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-T------TSSCEEEEEET
T ss_pred             eEEeeecccceeeeecccccceeeeecCCCCEEEEE-c------CCceEEEEeeC
Confidence            99999999888888766  46679999999887754 4      78888887754

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.8e-24  Score=196.47  Aligned_cols=285  Identities=11%  Similarity=0.046  Sum_probs=178.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCC-cEEEEe-cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDE-AVACRM-ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~-~~la~~-~~~~i~v~~~~~   79 (434)
                      |++|+|||+|++|+|++     .|++|+|||+.++.....+.....|...+.+++|++++ .+|+++ .++.|++|+...
T Consensus        14 I~~l~fsp~~~~L~s~s-----~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~   88 (342)
T d1yfqa_          14 ISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG   88 (342)
T ss_dssp             EEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred             EEEEEEeCCCCEEEEEE-----CCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence            78999999999999999     89999999997765433332221134678899999865 577776 578999999877


Q ss_pred             CCCceeeeeecCC-eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC-ceeeeee--cccceeEEEECCCCCe
Q 013871           80 FPKGILYRLRVPG-VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ-PLARRSF--FRCSTVQLNWNRGSTG  155 (434)
Q Consensus        80 ~~~~~~~~~~~~~-v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~-~i~~~~~--~~~~~~~~~ws~~G~~  155 (434)
                      ............. .....+.++ ...++..     +..+.+++|++....... .......  .......+.+.+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          89 SPSFQALTNNEANLGICRICKYG-DDKLIAA-----SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSEEECBSCCCCSCEEEEEEET-TTEEEEE-----ETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             ccccccccccccccccccccccc-ccccccc-----ccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            5443222222222 223334444 3333322     345689999975421011 1111111  1122334556666666


Q ss_pred             EEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEecccce---
Q 013871          156 LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCRP---  230 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wsp-dg~~~av~~g~~~~~v~l~d~~~~~---  230 (434)
                      ++...   .|...+       +|.+....... ..........+....+.| ++..++  .+..++.+.+|+.....   
T Consensus       163 ~~~~~---~d~~i~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         163 LIVGM---NNSQVQ-------WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYA--CSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             EEEEE---STTEEE-------EEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEE--EEETTSEEEEEECCTTCCST
T ss_pred             eeeec---CCCcEE-------EEecccCcccceeeeecccccceeeeEeecCCCCEEE--eecCCCeEEEEEecCCccee
Confidence            54432   233322       23322211111 111122244566666665 445555  46778899999764211   


Q ss_pred             ------eE---------EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCCCCEE
Q 013871          231 ------IL---------ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYF  294 (434)
Q Consensus       231 ------~~---------~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspdg~~l  294 (434)
                            ..         ..+...+++++|||+|++|++|+   .||.|+|||+++++.+..+.. +....++|+|+|++|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~---~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l  307 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNIL  307 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE---TTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEEC---CCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEE
Confidence                  11         11345688999999999999999   668999999999999988864 466679999999999


Q ss_pred             EEEEcCCceeeCCcEEEEeecCce
Q 013871          295 MTATTAPRLQIDNGIKIFHHNGSL  318 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~~g~~  318 (434)
                      ++|+.      |+.+++|....+.
T Consensus       308 ~~a~s------dd~~~~~~~~~~~  325 (342)
T d1yfqa_         308 CLATS------DDTFKTNAAIDQT  325 (342)
T ss_dssp             EEEEE------CTHHHHCSSSCTT
T ss_pred             EEEEc------CCcEEEeeeeCCC
Confidence            99999      8999998875553

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-21  Score=180.40  Aligned_cols=270  Identities=9%  Similarity=0.075  Sum_probs=170.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCce
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGI   84 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~   84 (434)
                      +|+++|++|+|++     .|+.|+|||+.++++++++..+.   ..+.+++|+++  +|+++ .|+.+++|+........
T Consensus        22 ~~~~~g~~l~sgs-----~Dg~i~vWd~~~~~~~~~~~~h~---~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~   91 (342)
T d2ovrb2          22 CLQFCGNRIVSGS-----DDNTLKVWSAVTGKCLRTLVGHT---GGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIH   91 (342)
T ss_dssp             EEEEETTEEEEEE-----TTSCEEEEETTTCCEEEECCCCS---SCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCEEEEEe-----CCCeEEEEECCCCCEEEEEeCCC---CCEEEEEeCCC--ccccceeccccccccccccccee
Confidence            3677899999999     89999999999999999887654   66779999875  66666 57899999986533211


Q ss_pred             eeeeecCCeeEEEEeCC------CCCeEEEEecC--------------------------CCCCCceEEEEEcCCCCCCC
Q 013871           85 LYRLRVPGVAAFEVSKA------PGSHVAVFVPE--------------------------SKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        85 ~~~~~~~~v~~~~~sp~------~~~~ia~~~~~--------------------------~~~~~~~v~i~~~~~~~~~~  132 (434)
                      ........+......+.      .+..+.++...                          ..+.++.+++|+...   ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~---~~  168 (342)
T d2ovrb2          92 TLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET---ET  168 (342)
T ss_dssp             EECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG---TE
T ss_pred             cccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc---ce
Confidence            11111111221111111      01111111100                          023446788888865   45


Q ss_pred             ceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE
Q 013871          133 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       133 ~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av  212 (434)
                      .+.....+....  ..++++|..++..   ..|...         ..++............+...+.++++++  +.|+ 
T Consensus       169 ~~~~~~~~~~~~--~~~~~~~~~l~s~---~~dg~i---------~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-  231 (342)
T d2ovrb2         169 CLHTLQGHTNRV--YSLQFDGIHVVSG---SLDTSI---------RVWDVETGNCIHTLTGHQSLTSGMELKD--NILV-  231 (342)
T ss_dssp             EEEEECCCSSCE--EEEEECSSEEEEE---ETTSCE---------EEEETTTCCEEEEECCCCSCEEEEEEET--TEEE-
T ss_pred             eeEEEcCccccc--ccccCCCCEEEEE---eCCCeE---------EEeecccceeeeEecccccceeEEecCC--CEEE-
Confidence            555544444433  3445567765432   234333         3333333322223333467787777764  5666 


Q ss_pred             EEccCCCeEEEEecccc-eeEEe-----CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-----C-
Q 013871          213 VYGFMPASATIFNKKCR-PILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-----E-  280 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~~~-~~~~~-----~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-----~-  280 (434)
                       ++..++.|++||.... ....+     +...+.++.|  +++++++|+   .+|.|+|||+++++++..+..     + 
T Consensus       232 -s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s---~Dg~i~iwd~~tg~~i~~~~~~~~~~~~  305 (342)
T d2ovrb2         232 -SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSS---DDGTVKLWDLKTGEFIRNLVTLESGGSG  305 (342)
T ss_dssp             -EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEE---TTSEEEEEETTTCCEEEEEEECTTGGGT
T ss_pred             -EEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEc---CCCEEEEEECCCCCEEEEEecccCCCCC
Confidence             5778999999998643 33333     2344455555  567999998   668999999999988877642     2 


Q ss_pred             -CceEEEECCCCCEEEEEEcCCceeeCCc----EEEEeecCc
Q 013871          281 -CSVTSEWSPDGRYFMTATTAPRLQIDNG----IKIFHHNGS  317 (434)
Q Consensus       281 -~~~~~~wspdg~~l~tas~~prl~~D~~----i~iw~~~g~  317 (434)
                       .+..++|+|+|.+|++|+.      ||+    |++||++-.
T Consensus       306 ~~v~~v~~s~~~~~la~g~~------dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         306 GVVWRIRASNTKLVCAVGSR------NGTEETKLLVLDFDVD  341 (342)
T ss_dssp             CEEEEEEECSSEEEEEEECS------SSSSCCEEEEEECCCC
T ss_pred             CCEEEEEECCCCCEEEEEeC------CCCCeeEEEEEeCCCC
Confidence             3566999999999999988      775    999998643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=6.4e-22  Score=181.52  Aligned_cols=253  Identities=10%  Similarity=0.077  Sum_probs=172.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFP   81 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~   81 (434)
                      |++|+|||    |+|++     .|+.|++||+.++.     ..   |...+.++.|++++.++..+.|++|++|+.....
T Consensus        16 I~~l~~s~----l~sgs-----~Dg~v~~Wd~~~~~-----~~---h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~   78 (287)
T d1pgua2          16 ITALTVNP----LISGS-----YDGRIMEWSSSSMH-----QD---HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE   78 (287)
T ss_dssp             EEEEETTT----TEEEE-----TTSCEEETTTTEEE-----CC---CCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE
T ss_pred             eEEEEECc----EEEEe-----CCCeEEEEECCCCC-----CC---CCCCEEEEEecCCCeEEEEeeccccccccccccc
Confidence            78999998    89999     89999999987653     12   3356668999988877666678999999865411


Q ss_pred             CceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           82 KGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        82 ~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                             ....+..+.++++ +..++..      ....+.+|+...   ...+......   .....+++++..+++...
T Consensus        79 -------~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~v~~~  138 (287)
T d1pgua2          79 -------FGSQPKVASANND-GFTAVLT------NDDDLLILQSFT---GDIIKSVRLN---SPGSAVSLSQNYVAVGLE  138 (287)
T ss_dssp             -------CSSCEEEEEECSS-SEEEEEE------TTSEEEEEETTT---CCEEEEEECS---SCEEEEEECSSEEEEEET
T ss_pred             -------cccceeeeeeccC-CceEEEe------ecccceeeeccc---eeeeeecccc---ceeeeeeccCcceeeecc
Confidence                   1123556677776 3333322      234577788766   4444443322   223455677777665421


Q ss_pred             ecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE----EeCC
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGS  236 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~----~~~~  236 (434)
                        .+...+.|       .  ..... .........+++.+++|+|++.+|+  +|..++.+.+||+......    ..|.
T Consensus       139 --~~~~v~~~-------~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         139 --EGNTIQVF-------K--LSDLEVSFDLKTPLRAKPSYISISPSETYIA--AGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             --TTSCEEEE-------E--TTEEEEEEECSSCCSSCEEEEEECTTSSEEE--EEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             --ccceeeee-------e--ccccceeeeeeeccCCceeEEEeccCccccc--cccccccccceeecccccccccccccc
Confidence              12222222       2  11110 1111223467899999999999988  5788999999999754432    2478


Q ss_pred             cCeeEEEECCCC----------CeEEEEecCCCCCeEEEEEccC-CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCce
Q 013871          237 GPYNTVRWNPKG----------KFLCLAGFGNLPGDMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRL  303 (434)
Q Consensus       237 ~~~~~i~~SP~g----------~~l~~~~~~~~~g~i~iwd~~~-~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl  303 (434)
                      ..+++++|+|.+          .+|++|+   .||.|+|||+++ .+.+....+|  .+..++|+|++ .|++++.    
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs---~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~----  277 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGS---LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA----  277 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEE---TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEET----
T ss_pred             cccceeeecccccccccccCCCCeeEeec---CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEEC----
Confidence            899999999854          5788888   567999999876 5677777666  66779999997 5889998    


Q ss_pred             eeCCcEEEEee
Q 013871          304 QIDNGIKIFHH  314 (434)
Q Consensus       304 ~~D~~i~iw~~  314 (434)
                        |+.|+||++
T Consensus       278 --D~~v~iW~i  286 (287)
T d1pgua2         278 --DACIKRWNV  286 (287)
T ss_dssp             --TSCEEEEEE
T ss_pred             --CCeEEEEEE
Confidence              999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=4.5e-20  Score=169.36  Aligned_cols=266  Identities=12%  Similarity=0.100  Sum_probs=185.6

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeC
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSK  100 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp  100 (434)
                      .|++|.|||+++++.+.++....    ....++|||||++|+ +. .+++|++||+.+...  ...+. ...+..+.+++
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~g~----~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~--~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV--IATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSEEEEEECT
T ss_pred             CCCEEEEEECCCCeEEEEEECCC----CceEEEEeCCCCEEEEEECCCCEEEEEECCCCce--eeeeecccccccccccc
Confidence            67899999999999999887652    233789999999875 44 467999999987543  22332 24578899999


Q ss_pred             CCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          101 APGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       101 ~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                      ++. .+.+..    .....+.+|+...   .+.+.....+ .....+.|+|+|..+++...  .+..         +...
T Consensus        84 ~~~-~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~--~~~~---------~~~~  143 (301)
T d1l0qa2          84 DGK-QVYVTN----MASSTLSVIDTTS---NTVAGTVKTG-KSPLGLALSPDGKKLYVTNN--GDKT---------VSVI  143 (301)
T ss_dssp             TSS-EEEEEE----TTTTEEEEEETTT---TEEEEEEECS-SSEEEEEECTTSSEEEEEET--TTTE---------EEEE
T ss_pred             ccc-cccccc----cccceeeeccccc---ceeeeecccc-ccceEEEeecCCCeeeeeec--cccc---------eeee
Confidence            844 333322    2345788999876   5555444433 35568899999998765432  1211         2233


Q ss_pred             eeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCC
Q 013871          181 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       181 ~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      +.... .....+.....+..++|+|+++.+++. +.....+.+++.....+...  .......++|+++|+.++++..+.
T Consensus       144 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         144 NTVTK-AVINTVSVGRSPKGIAVTPDGTKVYVA-NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             ETTTT-EEEEEEECCSSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS
T ss_pred             ecccc-ceeeecccCCCceEEEeeccccceeee-cccccccccccccceeeeecccccCCcceeeccccccccccccccc
Confidence            32222 222233334567899999999998874 44456888888765544432  344567899999999988887666


Q ss_pred             CCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          259 LPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       259 ~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      ..+.|.+||..+++.+..+..+ .+..++|||||++|+++...     |+.|+|||. +|+++...
T Consensus       222 ~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~-----~~~i~v~D~~t~~~~~~~  282 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----CNTVSVIDTATNTITATM  282 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEE
T ss_pred             eeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECC-----CCeEEEEECCCCeEEEEE
Confidence            6789999999999998887654 66779999999998655443     899999998 56666544

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.3e-21  Score=188.45  Aligned_cols=281  Identities=13%  Similarity=0.169  Sum_probs=172.5

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc-------EEEEEeecCc--CCCCCCeeeecC-CCcEEEEe-cCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE-------AVYQLFQKNM--TKTTWPSIRFSS-DEAVACRM-ATN   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~-------~~~~~~~~~~--~~~~~~~~~~S~-d~~~la~~-~~~   70 (434)
                      |++|++++  ++|+|++     .|+.|+|||..+++       .+..+.....  +...+..+.++. ++.+++++ .++
T Consensus        17 I~~v~~~~--~~l~S~S-----~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg   89 (393)
T d1sq9a_          17 IFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG   89 (393)
T ss_dssp             EEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             cEEEEEeC--CEEEEEE-----CCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence            67888764  7999999     89999999986553       1222211100  001111222222 33456665 478


Q ss_pred             eEEEEeCCCCCCceee---ee-------ecCCeeEEEEeCCCCC----eEEEEecCCCCCCceEEEEEcCCCCCCCceee
Q 013871           71 EIQFFDTTDFPKGILY---RL-------RVPGVAAFEVSKAPGS----HVAVFVPESKGSPASVQIYACGKDLQSQPLAR  136 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~---~~-------~~~~v~~~~~sp~~~~----~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~  136 (434)
                      +|++|+..........   ..       +...+..+.|+++...    .++.     .+.++.+.+|++...  ......
T Consensus        90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dg~i~vw~~~~~--~~~~~~  162 (393)
T d1sq9a_          90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA-----TDVKGTTYIWKFHPF--ADESNS  162 (393)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE-----EETTSCEEEEEEESS--SSHHHH
T ss_pred             cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEE-----EcCCCcEEEEEeecC--Ccccce
Confidence            9999997543221111   11       1123556777776321    2221     234567888887542  111100


Q ss_pred             eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 013871          137 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF  216 (434)
Q Consensus       137 ~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~  216 (434)
                      .....           ...+.                   +..       ...........+.+++|+|++ .|+  +|.
T Consensus       163 ~~~~~-----------~~~~~-------------------~~~-------~~~~~~~~~~~~~~v~~s~dg-~la--sgs  202 (393)
T d1sq9a_         163 LTLNW-----------SPTLE-------------------LQG-------TVESPMTPSQFATSVDISERG-LIA--TGF  202 (393)
T ss_dssp             TTTCC-----------CCEEE-------------------EEE-------EECCSSSSCCCCCEEEECTTS-EEE--EEC
T ss_pred             eeeee-----------cccee-------------------ccc-------ceecccCCCCcEEEEEECCCC-EEE--EEe
Confidence            00000           00000                   000       000011124568899999998 554  688


Q ss_pred             CCCeEEEEeccc-ceeEEe--------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee---------
Q 013871          217 MPASATIFNKKC-RPILEL--------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR---------  278 (434)
Q Consensus       217 ~~~~v~l~d~~~-~~~~~~--------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~---------  278 (434)
                      .|+.|+|||++. +++..+        |..+|++++|||+|++|++|+.|+..+.|++||+++++.+..+.         
T Consensus       203 ~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~  282 (393)
T d1sq9a_         203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS  282 (393)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred             CCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccce
Confidence            999999999963 333322        67899999999999999999977655679999999998877764         


Q ss_pred             ----CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeee--ecccce----eeEEEcCCCCCCCC
Q 013871          279 ----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLF----QAEWKPVSPDKFGD  342 (434)
Q Consensus       279 ----~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~--~~~~~~----~~~w~p~~~~~~~~  342 (434)
                          +|  .++.++|+|||++|++++.      |+.|+|||+ +|+++...  |.+.+.    .+.|.|....+...
T Consensus       283 ~~~~gH~~~V~~l~fspd~~~l~S~s~------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         283 LGEFAHSSWVMSLSFNDSGETLCSAGW------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             -CCBSBSSCEEEEEECSSSSEEEEEET------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             eeeecccCceeeeccCCCCCeeEEECC------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence                33  5677999999999999999      999999998 56666554  333343    46677777665543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.1e-20  Score=177.27  Aligned_cols=243  Identities=12%  Similarity=0.135  Sum_probs=165.5

Q ss_pred             CCCeeeecCCCcEEEEecCCe--EEEEeCCCCCCceeeee--e-cCCeeEEEEeCCCC-CeEEEEecCCCCCCceEEEEE
Q 013871           51 TWPSIRFSSDEAVACRMATNE--IQFFDTTDFPKGILYRL--R-VPGVAAFEVSKAPG-SHVAVFVPESKGSPASVQIYA  124 (434)
Q Consensus        51 ~~~~~~~S~d~~~la~~~~~~--i~v~~~~~~~~~~~~~~--~-~~~v~~~~~sp~~~-~~ia~~~~~~~~~~~~v~i~~  124 (434)
                      ...++.|+|++..|+.+.++.  |+.|+...........+  | ...|..++|+|+.+ .+++.     ++.++.|+||+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~las-----gs~Dg~i~iWd   93 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS-----GDESGKVIVWG   93 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE-----EETTSEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEE-----EeCCCCEEEee
Confidence            445789999999999887665  45555433222122222  2 24699999999643 55553     45678999999


Q ss_pred             cCCCCCCCceee--------eeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-CCC
Q 013871          125 CGKDLQSQPLAR--------RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKE  195 (434)
Q Consensus       125 ~~~~~~~~~i~~--------~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~  195 (434)
                      +...   .....        ...+...+..+.|+++|+.|++.. .+.+....         .+..... .....+ .+.
T Consensus        94 ~~~~---~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~~~~~~~~---------~~~~~~~-~~~~~~~~h~  159 (325)
T d1pgua1          94 WTFD---KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG-EGRDNFGV---------FISWDSG-NSLGEVSGHS  159 (325)
T ss_dssp             EEEE---GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE-CCSSCSEE---------EEETTTC-CEEEECCSCS
T ss_pred             ecCC---cceeeeecccccccccccCcEEEEEECCCCCccceee-ccccceEE---------EEeeccc-ccceeeeecc
Confidence            8652   22221        223456678999999999987653 22222222         2222222 122222 357


Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe-----CCcCeeEEEECCC-CCeEEEEecCCCCCeEEEEEc
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL-----GSGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFWDY  268 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~-----~~~~~~~i~~SP~-g~~l~~~~~~~~~g~i~iwd~  268 (434)
                      ..|.+++|+|++..+++ ++..++.+.+||..... ...+     +...+.+++|+|+ +++|++++   .+|.|++||+
T Consensus       160 ~~v~~~~~~~~~~~~~~-~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~---~d~~i~iwd~  235 (325)
T d1pgua1         160 QRINACHLKQSRPMRSM-TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDRKISCFDG  235 (325)
T ss_dssp             SCEEEEEECSSSSCEEE-EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTCCEEEEET
T ss_pred             cccccccccccccceEE-EeecccccccccccccccceecccccCCCCccEEeeeccccceeccccc---cccceeeeee
Confidence            89999999999987765 46778999999986433 2222     4677999999997 57888888   5579999999


Q ss_pred             cCCEEEEEeeCC--CceEEEEC---CCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee
Q 013871          269 VDGKQLGTTRAE--CSVTSEWS---PDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       269 ~~~~~i~~~~~~--~~~~~~ws---pdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~  322 (434)
                      ++++.+..+.+|  .+..+.|+   |||++|++++.      |+.|+|||+. |+++...
T Consensus       236 ~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~------D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA------DATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEET------TSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccceeeeeccCCCEEEEEeC------CCeEEEEECCCCCEEEEE
Confidence            999999988765  22223444   78999999999      9999999995 5555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-20  Score=168.88  Aligned_cols=262  Identities=13%  Similarity=0.124  Sum_probs=161.8

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |+|  +++||++|+|++     .|+.|+|||+.+++++.++..+.   ..+.+++|  |+++|++++ |+.|++|+....
T Consensus        18 V~c--~~~d~~~l~sgs-----~Dg~i~vWd~~~~~~~~~l~~H~---~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          18 VYC--LQYDDQKIVSGL-----RDNTIKIWDKNTLECKRILTGHT---GSVLCLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EEE--EECCSSEEEEEE-----SSSCEEEEESSSCCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEE--EEEcCCEEEEEe-----CCCeEEEEECCCCcEEEEEecCC---CCEeeeec--ccceeecccccccccccccccc
Confidence            445  566899999999     89999999999999999987653   56656665  788999884 679999999875


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEE
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVA  160 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~  160 (434)
                      ...  ............+.+.....+..      ...+.+.+|+...............+...+..+.+.+  ..++.. 
T Consensus        86 ~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~-  154 (293)
T d1p22a2          86 EML--NTLIHHCEAVLHLRFNNGMMVTC------SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSA-  154 (293)
T ss_dssp             CEE--EEECCCCSCEEEEECCTTEEEEE------ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEE-
T ss_pred             ccc--ccccccccccccccccccceeec------ccccceeEeeccccccccccccccccccccccceecc--cccccc-
Confidence            432  22222222223333332222221      2345788999876321122222233333444444443  332221 


Q ss_pred             EecccccCceeecceeEEEEeeCCcceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc-eeEEeCCcC
Q 013871          161 QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELGSGP  238 (434)
Q Consensus       161 ~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~-~~~~~~~~~  238 (434)
                        ..|...         ..++.... .....+ .....+..+.++  +..++  ++..|+.+++||++.. .+..+....
T Consensus       155 --s~d~~i---------~~~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~  218 (293)
T d1p22a2         155 --SGDRTI---------KVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVV--SGSSDNTIRLWDIECGACLRVLEGHE  218 (293)
T ss_dssp             --ETTSEE---------EEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEE--EEETTSCEEEEETTTCCEEEEECCCS
T ss_pred             --cCCCce---------eeecCCCC-cEEEEEcccccccccccCC--CCeEE--EecCCCEEEEEecccceeeeeecccc
Confidence              123332         33333222 111112 224567777665  45665  5788999999999754 344442222


Q ss_pred             eeEEEECCCCCeEEEEecCCCCCeEEEEEccC---------CEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCC
Q 013871          239 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD---------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDN  307 (434)
Q Consensus       239 ~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~---------~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~  307 (434)
                      .....+++++.+|++++   .+|.|++||+.+         ...+..+.+|  .++.++|  |+.+|++++.      |+
T Consensus       219 ~~v~~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~------Dg  287 (293)
T d1p22a2         219 ELVRCIRFDNKRIVSGA---YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH------DD  287 (293)
T ss_dssp             SCEEEEECCSSEEEEEE---TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS------SS
T ss_pred             eeeeeccccceEEEEEc---CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEec------CC
Confidence            22335778899999998   567999999753         2466777766  4556777  5678999999      99


Q ss_pred             cEEEEe
Q 013871          308 GIKIFH  313 (434)
Q Consensus       308 ~i~iw~  313 (434)
                      .|+|||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=3.1e-21  Score=188.05  Aligned_cols=295  Identities=11%  Similarity=0.055  Sum_probs=167.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~   77 (434)
                      +..|+|||||++|++.+     .|++|++||+.+++...  .+.....+.....++.|||||++++.+  .++.+.+||.
T Consensus        64 ~~~vafSPDGk~l~~~~-----~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~  138 (426)
T d1hzua2          64 VHISRMSASGRYLLVIG-----RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG  138 (426)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred             eeEEEECCCCCEEEEEe-----CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC
Confidence            56899999999999988     78999999999987543  332221122223367899999987655  4689999998


Q ss_pred             CCCCCceeeeeecCCe-----------eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeE
Q 013871           78 TDFPKGILYRLRVPGV-----------AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQ  146 (434)
Q Consensus        78 ~~~~~~~~~~~~~~~v-----------~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~  146 (434)
                      ...........+...+           ..+..+++ +..+.+...    ..+.+.++.....  ................
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-~~~~~~~~~----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         139 ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE-HPEFIVNVK----ETGKVLLVNYKDI--DNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS-SSEEEEEET----TTTEEEEEECSSS--SSCEEEEEECCSSEEE
T ss_pred             CccceeEEeeccCCCccceeecCCCceeEEEECCC-CCEEEEecC----CCCeEEEEEeccc--cceeeEEeccCCccEe
Confidence            8765433222222222           33344444 222222221    2245555555441  1112222234455678


Q ss_pred             EEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCC-CCCeEEEEECcCCCE-EEEEEccCCCeEEE
Q 013871          147 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK-EGPVHDVQWSYSGSE-FAVVYGFMPASATI  223 (434)
Q Consensus       147 ~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~-~~~i~~v~wspdg~~-~av~~g~~~~~v~l  223 (434)
                      +.++|+|+++++....  +.         .+..++..... ........ ..+.....+.+++.. ...+....++.+.+
T Consensus       212 ~~~~~~g~~~~~a~~~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~  280 (426)
T d1hzua2         212 GGWDSSHRYFMTAANN--SN---------KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISL  280 (426)
T ss_dssp             EEECTTSCEEEEEETT--CS---------EEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEE
T ss_pred             eeECCCCcEEEeeeec--cc---------ceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEE
Confidence            8999999987664211  11         12222222211 11111111 112223333333322 22223445667777


Q ss_pred             Eecc--------cceeEEe--CCcCeeEEEECCCCCeEEEEecCC----CCCeEEEEEccCCEEEEEee----------C
Q 013871          224 FNKK--------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN----LPGDMAFWDYVDGKQLGTTR----------A  279 (434)
Q Consensus       224 ~d~~--------~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~----~~g~i~iwd~~~~~~i~~~~----------~  279 (434)
                      ++..        .+....+  |...+..++|||||++|++....+    .+++|.|||+++++...++.          +
T Consensus       281 ~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~  360 (426)
T d1hzua2         281 IGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG  360 (426)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS
T ss_pred             eeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC
Confidence            7653        2333333  677789999999999999643211    24689999999886443321          1


Q ss_pred             -CCceEEEECCCCCEEEEEEcC-CceeeCCcEEEEeec-Cceeee
Q 013871          280 -ECSVTSEWSPDGRYFMTATTA-PRLQIDNGIKIFHHN-GSLFFK  321 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~-prl~~D~~i~iw~~~-g~~~~~  321 (434)
                       ..+..++|||||++|+.++.. ..  -|+.|+|||.. +++...
T Consensus       361 ~~rv~~~~fSpDGk~i~vs~~~~~~--~~~~i~v~D~~T~k~~~~  403 (426)
T d1hzua2         361 AKRVVQPEYNKRGDEVWFSVWNGKN--DSSALVVVDDKTLKLKAV  403 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEECCCTT--SCCEEEEEETTTTEEEEE
T ss_pred             CccEEEEEECCCCCEEEEEEecCCC--CCCeEEEEECCCCeEEEE
Confidence             156779999999988765421 00  17889999985 444443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.5e-20  Score=173.07  Aligned_cols=270  Identities=9%  Similarity=0.011  Sum_probs=174.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~   80 (434)
                      |++|+|||+ .+|++++     .|+.|++|++..++.+........ ........+++++.+++.+ .++.|++|++...
T Consensus        56 V~~l~~s~~-~~l~s~s-----~D~~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~  128 (355)
T d1nexb2          56 VWALKYAHG-GILVSGS-----TDRTVRVWDIKKGCCTHVFEGHNS-TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE  128 (355)
T ss_dssp             EEEEEEETT-TEEEEEE-----TTCCEEEEETTTTEEEEEECCCSS-CEEEEEEEEETTEEEEEEEETTSEEEEEECCC-
T ss_pred             EEEEEEcCC-CEEEEEe-----cccccccccccccccccccccccc-cccccccccccccceeeeecCCCcEEEEEccCC
Confidence            789999995 5899988     899999999999887766554331 1122256678899998887 4679999998653


Q ss_pred             CCceeeeeecC------------C-e--------eEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee
Q 013871           81 PKGILYRLRVP------------G-V--------AAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF  139 (434)
Q Consensus        81 ~~~~~~~~~~~------------~-v--------~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~  139 (434)
                      ...........            . +        ....+.++ +..++.     ...++.+++|++..   .+.+.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~-----~~~d~~i~~~d~~~---~~~~~~~~~  199 (355)
T d1nexb2         129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVS-----GSYDNTLIVWDVAQ---MKCLYILSG  199 (355)
T ss_dssp             ----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEE-TTEEEE-----EETTSCEEEEETTT---TEEEEEECC
T ss_pred             ceeccccccceeccceeccccccceeeeeeeccccccccccc-cceeee-----ecccceeeeeeccc---ccceeeeec
Confidence            32111000000            0 0        00111222 122222     23456899999987   677777777


Q ss_pred             cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          140 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       140 ~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                      +......+.|++++..++...   .|.+.+         .++..........-.+.++|.+++|++  +.|+  ++..|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~---~d~~i~---------i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~--~~~~dg  263 (355)
T d1nexb2         200 HTDRIYSTIYDHERKRCISAS---MDTTIR---------IWDLENGELMYTLQGHTALVGLLRLSD--KFLV--SAAADG  263 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEE---TTSCEE---------EEETTTCCEEEEECCCSSCCCEEEECS--SEEE--EECTTS
T ss_pred             cccccccccccccceeeeccc---ccceEE---------eeecccccccccccccccccccccccc--ceee--eeeccc
Confidence            777888999999999875532   344333         233322212222223478899999975  4555  588899


Q ss_pred             eEEEEecc-cceeEEeCCcCeeEE-EECCCCCeEEEEecCCCCCeEEEEEccCCEEEEE-eeCC--CceEEEECCCCCEE
Q 013871          220 SATIFNKK-CRPILELGSGPYNTV-RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       220 ~v~l~d~~-~~~~~~~~~~~~~~i-~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~-~~~~--~~~~~~wspdg~~l  294 (434)
                      .|++||++ .......|...+.++ .++|++++|++++    +|.|+|||+++++++.. +.+|  .+..++|+|+ ..+
T Consensus       264 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~----d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~  338 (355)
T d1nexb2         264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLV  338 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEE----TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEE
T ss_pred             ccccccccccceecccccCCceEEEEEcCCCCEEEEEe----CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEE
Confidence            99999996 445556676666665 5677777776553    46999999999988753 4444  4566999987 466


Q ss_pred             EEEEcCCceeeCCcEEEEee
Q 013871          295 MTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~~  314 (434)
                      ++++.      |+.++||-+
T Consensus       339 ~~~s~------dg~~~l~~~  352 (355)
T d1nexb2         339 AAVEK------DGQSFLEIL  352 (355)
T ss_dssp             EEEES------SSCEEEEEE
T ss_pred             EEEEC------CCcEEEEEE
Confidence            66777      998666543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=8.9e-21  Score=178.56  Aligned_cols=257  Identities=11%  Similarity=0.026  Sum_probs=166.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDF   80 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~   80 (434)
                      |++++|||||++|++.+..   .+..|+|||+.+++... +..+   ...+.+++|||||++|+++. ++.+++|+....
T Consensus        45 v~~~~~spDg~~l~~~~~~---~g~~v~v~d~~~~~~~~-~~~~---~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  117 (360)
T d1k32a3          45 IRYVRRGGDTKVAFIHGTR---EGDFLGIYDYRTGKAEK-FEEN---LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG  117 (360)
T ss_dssp             EEEEEECSSSEEEEEEEET---TEEEEEEEETTTCCEEE-CCCC---CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             EEEEEECCCCCEEEEEEcC---CCCEEEEEECCCCcEEE-eeCC---CceEEeeeecccccccceecccccccccccccc
Confidence            6899999999999987721   22479999999887643 3332   25566899999999999885 569999999886


Q ss_pred             CCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-----CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCe
Q 013871           81 PKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-----KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG  155 (434)
Q Consensus        81 ~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-----~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~  155 (434)
                      ........+...+.+++|+|+ +..+++.....     ......+++|++..   + .......+......+.|+|+|+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~-~~~~~~~~~~~~~~~~~spdg~~  192 (360)
T d1k32a3         118 KPTVIERSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEG---R-KIFAATTENSHDYAPAFDADSKN  192 (360)
T ss_dssp             CEEEEEECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTT---T-EEEECSCSSSBEEEEEECTTSCE
T ss_pred             ceeeeeecccccccchhhccc-eeeeeeeccccccceeeccccceeeecccc---C-ceeeecccccccccccccCCCCE
Confidence            654444455567889999999 56665543332     23446789999876   3 33444555667778999999999


Q ss_pred             EEEEEEecccccCceeec---------ceeEEEEeeCCcc------------------------eeeeecC-CCCCeEEE
Q 013871          156 LLAVAQSDVDKTNQSYYG---------ESKLNYLTTDGTH------------------------EGLVPLR-KEGPVHDV  201 (434)
Q Consensus       156 l~~~~~~~~d~~~~~~~g---------~~~l~~l~~~~~~------------------------~~~v~l~-~~~~i~~v  201 (434)
                      |++..   .|.....|..         ...++.+......                        .....+. ..+....+
T Consensus       193 l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (360)
T d1k32a3         193 LYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI  269 (360)
T ss_dssp             EEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEE
T ss_pred             EEEEe---CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEe
Confidence            87653   2233322211         1122222111000                        0011111 12233445


Q ss_pred             EECcCCCEEEE-----------EEccCCCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          202 QWSYSGSEFAV-----------VYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       202 ~wspdg~~~av-----------~~g~~~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ...+++..++.           +++..++.+.+||++...+..+ .+.+++++|||||++|++++   .+|.|++||+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~v~~~~~SpDG~~l~~~~---~Dg~i~v~d~~~  345 (360)
T d1k32a3         270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-KNNLTDLRLSADRKTVMVRK---DDGKIYTFPLEK  345 (360)
T ss_dssp             EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-EEEEEEEEECTTSCEEEEEE---TTSCEEEEESSC
T ss_pred             eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-cCCcCEEEECCCCCEEEEEE---CCCeEEEEECCC
Confidence            54444332221           1233456899999987665443 45689999999999999998   668999999998


Q ss_pred             CEEEEEe
Q 013871          271 GKQLGTT  277 (434)
Q Consensus       271 ~~~i~~~  277 (434)
                      ++...++
T Consensus       346 ~~~~~~~  352 (360)
T d1k32a3         346 PEDERTV  352 (360)
T ss_dssp             TTSCEEC
T ss_pred             CCcceEE
Confidence            8554443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=6e-20  Score=178.80  Aligned_cols=307  Identities=10%  Similarity=0.037  Sum_probs=186.9

Q ss_pred             EEecCCCc--EEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCC
Q 013871            5 LTCLRVGL--IIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFP   81 (434)
Q Consensus         5 l~fSP~g~--~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~   81 (434)
                      +.|++|.+  ++++.+     .|+.|+|||+.+++.+.++..+    ..+..++|||||++|++++ +++|++||+....
T Consensus        24 ~~~~~d~~~~~~V~~~-----~dg~v~vwD~~t~~~~~~l~~g----~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~   94 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLR-----DAGQIALVDGDSKKIVKVIDTG----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKE   94 (426)
T ss_dssp             CCSCCCGGGEEEEEET-----TTTEEEEEETTTCSEEEEEECC----SSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred             ccccCCCCeEEEEEEc-----CCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence            34666655  344544     7899999999999999998765    3455899999999998875 6899999998765


Q ss_pred             CceeeeeecC-C----eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccce-----------e
Q 013871           82 KGILYRLRVP-G----VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCST-----------V  145 (434)
Q Consensus        82 ~~~~~~~~~~-~----v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~-----------~  145 (434)
                      ......+... +    +.+..|||++ .++++-.    ..+..+.+|+...   ...+.....+....           .
T Consensus        95 ~~~~~~i~~~~~~~~~~~s~~~spDG-~~l~v~~----~~~~~v~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (426)
T d1hzua2          95 PTKVAEIKIGIEARSVESSKFKGYED-RYTIAGA----YWPPQFAIMDGET---LEPKQIVSTRGMTVDTQTYHPEPRVA  166 (426)
T ss_dssp             CEEEEEEECCSEEEEEEECCSTTCTT-TEEEEEE----EESSEEEEEETTT---CCEEEEEECCEECSSSCCEESCCCEE
T ss_pred             eeEEEEEeCCCCCcceEEeeeecCCC-CEEEEee----cCCCeEEEEcCCc---cceeEEeeccCCCccceeecCCCcee
Confidence            4333343322 2    3345566774 4443321    2346899999887   55555444433222           3


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~  224 (434)
                      .+..++++..+++.. .          +...+..+....... ....+.....+++++|+|+++++.+ +......+.++
T Consensus       167 ~i~~s~d~~~~~~~~-~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-a~~~~~~~~~~  234 (426)
T d1hzua2         167 AIIASHEHPEFIVNV-K----------ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT-AANNSNKVAVI  234 (426)
T ss_dssp             EEEECSSSSEEEEEE-T----------TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE-EETTCSEEEEE
T ss_pred             EEEECCCCCEEEEec-C----------CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe-eeecccceeee
Confidence            344455555443321 0          111223332222111 1112234567899999999998887 45566789999


Q ss_pred             ecccceeE-Ee--C--CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-------CEEEEEeeCC--CceEEEECCC
Q 013871          225 NKKCRPIL-EL--G--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-------GKQLGTTRAE--CSVTSEWSPD  290 (434)
Q Consensus       225 d~~~~~~~-~~--~--~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-------~~~i~~~~~~--~~~~~~wspd  290 (434)
                      |.....+. ..  +  ......+.+.+++...+.+.....++.+.+|+...       ++.+..+.+|  .+..++||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            98654433 22  1  22223344444443222222222457888888654       3677777776  5666999999


Q ss_pred             CCEEEEEEc-CCceeeCCcEEEEee-cCceeeee-----------ecccceeeEEEcCCCCCC
Q 013871          291 GRYFMTATT-APRLQIDNGIKIFHH-NGSLFFKK-----------MFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       291 g~~l~tas~-~prl~~D~~i~iw~~-~g~~~~~~-----------~~~~~~~~~w~p~~~~~~  340 (434)
                      |++|++... .+.-..|++|+|||+ +++.+++.           ....+..+.|+|++..++
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~  377 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  377 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence            999996432 111122889999998 45544432           123588899999998764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=4.1e-19  Score=165.85  Aligned_cols=281  Identities=10%  Similarity=-0.017  Sum_probs=174.5

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCC
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPK   82 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~   82 (434)
                      ++||++|+||++.+     .|++|.|||+.+++.+.++....  ......+.|||||++++..  .++.|.+||+.....
T Consensus         2 ~a~~~~~~~l~~~~-----~~~~v~v~D~~t~~~~~t~~~~~--~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPD--KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSS--CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCCCCcEEEEEc-----CCCEEEEEECCCCCEEEEEEcCC--CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee
Confidence            68999999999999     78999999999999998886432  1344489999999987544  457999999987543


Q ss_pred             ceeeeee------cCCeeEEEEeCCCCCeEEEEecC-------CCCCCceEEEEEcCCCCCCCceeeeeec--ccceeEE
Q 013871           83 GILYRLR------VPGVAAFEVSKAPGSHVAVFVPE-------SKGSPASVQIYACGKDLQSQPLARRSFF--RCSTVQL  147 (434)
Q Consensus        83 ~~~~~~~------~~~v~~~~~sp~~~~~ia~~~~~-------~~~~~~~v~i~~~~~~~~~~~i~~~~~~--~~~~~~~  147 (434)
                      .......      ...+..++++|++. .+.+....       ....+..+.+|+...   +........+  ......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~  150 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTAD---GLEAKPVRTFPMPRQVYLM  150 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGG---GGGBCCSEEEECCSSCCCE
T ss_pred             eeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEeccc---ceeeeEEEeeeccCceEEE
Confidence            2211111      11356789999954 33322111       012346788888876   3333322222  1223345


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEE--------------
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV--------------  213 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~--------------  213 (434)
                      .+++++..++.  ..             .+..+++... .....+........+.++|++..+.+.              
T Consensus       151 ~~~~~~~~~~~--~~-------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (346)
T d1jmxb_         151 RAADDGSLYVA--GP-------------DIYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA  214 (346)
T ss_dssp             EECTTSCEEEE--SS-------------SEEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred             EecCCCEEEEe--CC-------------cceEEEccCC-CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeee
Confidence            56666653221  11             1222222221 111111112233444455555443221              


Q ss_pred             ----------EccCCCeEEEEecccceeE----EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          214 ----------YGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       214 ----------~g~~~~~v~l~d~~~~~~~----~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                                ++.....+.+||.......    .-+...+..+.++|++.+++....    +.|.+||..+++.+..+..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~~~~  290 (346)
T d1jmxb_         215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKAANL  290 (346)
T ss_dssp             EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEEEEC
T ss_pred             eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEEEcC
Confidence                      1112235666776533322    125666778999999998887753    3799999999998887764


Q ss_pred             -CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeee
Q 013871          280 -ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       280 -~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~  322 (434)
                       +.+..++|||||++|++++.      |+.|+|||.. ++.+...
T Consensus       291 ~~~~~~va~s~DG~~l~v~~~------d~~v~v~D~~t~~~i~~i  329 (346)
T d1jmxb_         291 DHTYYCVAFDKKGDKLYLGGT------FNDLAVFNPDTLEKVKNI  329 (346)
T ss_dssp             SSCCCEEEECSSSSCEEEESB------SSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEeC------CCcEEEEECccCCEEEEE
Confidence             46778999999999999998      9999999995 5555543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=6.6e-18  Score=156.90  Aligned_cols=275  Identities=9%  Similarity=-0.041  Sum_probs=171.2

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEE-Ee-cCCeEEEEeCCCCCCceeeeee
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVAC-RM-ATNEIQFFDTTDFPKGILYRLR   89 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la-~~-~~~~i~v~~~~~~~~~~~~~~~   89 (434)
                      .||+|.+     .|++|.|||+.+++.+.++..... ......++|||||++++ ++ .++.|.+||+.+.........+
T Consensus         2 ~~~vt~~-----~d~~v~v~D~~s~~~~~~i~~~~~-~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEc-----CCCEEEEEECCCCeEEEEEECCCC-CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            5899999     889999999999999998876431 13345899999999875 44 4679999999886543222222


Q ss_pred             c-----CCeeEEEEeCCCCCeEEEEe-cC-----CCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           90 V-----PGVAAFEVSKAPGSHVAVFV-PE-----SKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        90 ~-----~~v~~~~~sp~~~~~ia~~~-~~-----~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      .     ..+..++++|++...+.... ..     ....+..+.+|+...   ...+..... ......+.|+++|+++++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~-~~~~~~~~~s~dg~~l~~  151 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA-PRQITMLAWARDGSKLYG  151 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC-CSSCCCEEECTTSSCEEE
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC---CeEEEeccc-cCCceEEEEcCCCCEEEE
Confidence            1     23457899999544332211 10     112456788999877   555544443 334567899999998765


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEE-------------E---------Ecc
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV-------------V---------YGF  216 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av-------------~---------~g~  216 (434)
                      . +  .+           .+.++..... ....+..........++|++..+..             .         .+.
T Consensus       152 ~-~--~~-----------~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (337)
T d1pbyb_         152 L-G--RD-----------LHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA  216 (337)
T ss_dssp             E-S--SS-----------EEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred             E-c--CC-----------cceeeeecCc-EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence            3 1  11           1112221111 0111100001111122222221110             0         011


Q ss_pred             CCCeEEEEecccceeEE--e--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCC
Q 013871          217 MPASATIFNKKCRPILE--L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDG  291 (434)
Q Consensus       217 ~~~~v~l~d~~~~~~~~--~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg  291 (434)
                      .+..+.+||........  +  +......+.++|++.+++.+.     +.|.+||+.+++.+..+... .+..++|||||
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG  291 (337)
T d1pbyb_         217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-----NVLESFDLEKNASIKRVPLPHSYYSVNVSTDG  291 (337)
T ss_dssp             EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-----SEEEEEETTTTEEEEEEECSSCCCEEEECTTS
T ss_pred             cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-----ccEEEEECCCCcEEEEEcCCCCEEEEEECCCC
Confidence            22357777775433221  2  455667789999999987664     58999999999988887665 56679999999


Q ss_pred             CEEEEEEcCCceeeCCcEEEEeec-Cceeeee
Q 013871          292 RYFMTATTAPRLQIDNGIKIFHHN-GSLFFKK  322 (434)
Q Consensus       292 ~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~  322 (434)
                      ++|++++.      |+.|+|||.. ++.+...
T Consensus       292 ~~l~v~~~------~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         292 STVWLGGA------LGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             CEEEEESB------SSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEeC------CCcEEEEECCCCcEEEEE
Confidence            99999988      9999999985 4555443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.81  E-value=4.3e-17  Score=149.03  Aligned_cols=245  Identities=11%  Similarity=0.048  Sum_probs=164.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~   79 (434)
                      +..|+|||||++|+....    .++.|.+||+.+++.+.++....    ....+.|++|+.+++..  .+..+.+|+...
T Consensus        34 p~~va~spdG~~l~v~~~----~~~~i~v~d~~t~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANA----HSNDVSIIDTATNNVIATVPAGS----SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             EEEEEECTTSSEEEEEEG----GGTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEEeCCCCEEEEEEC----CCCEEEEEECCCCceeeeeeccc----cccccccccccccccccccccceeeeccccc
Confidence            357999999999865441    56889999999999998887653    23478999999877655  346999999877


Q ss_pred             CCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEE
Q 013871           80 FPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA  158 (434)
Q Consensus        80 ~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~  158 (434)
                      ...  ...+. ......+.++|++ ..+.+..    .....+.+|+..+   ...+...... .....+.|++++..+++
T Consensus       106 ~~~--~~~~~~~~~~~~~~~~~dg-~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~  174 (301)
T d1l0qa2         106 NTV--AGTVKTGKSPLGLALSPDG-KKLYVTN----NGDKTVSVINTVT---KAVINTVSVG-RSPKGIAVTPDGTKVYV  174 (301)
T ss_dssp             TEE--EEEEECSSSEEEEEECTTS-SEEEEEE----TTTTEEEEEETTT---TEEEEEEECC-SSEEEEEECTTSSEEEE
T ss_pred             cee--eeeccccccceEEEeecCC-Ceeeeee----ccccceeeeeccc---cceeeecccC-CCceEEEeeccccceee
Confidence            542  22222 3457788999984 4443322    2335788888876   4555444433 34567889999998766


Q ss_pred             EEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCCeEEEEecccce-eEEe-C
Q 013871          159 VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKKCRP-ILEL-G  235 (434)
Q Consensus       159 ~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~-g~~~~~v~l~d~~~~~-~~~~-~  235 (434)
                      ...   +..        .+........ .....+........++|+++++.+++.. +..++.+.+||+.... +..+ .
T Consensus       175 ~~~---~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         175 ANF---DSM--------SISVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             EET---TTT--------EEEEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             ecc---ccc--------ccccccccce-eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            421   111        1122222221 2222222245678899999999887653 3345689999997543 4444 3


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      ......++|||||++|++++.  .++.|.+||+++++.+.++.-
T Consensus       243 ~~~~~~va~spdg~~l~va~~--~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALS--FCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEEC--CCCeEEEEECCCCeEEEEEeC
Confidence            456789999999998865553  347999999999999888753

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.81  E-value=1.1e-16  Score=151.75  Aligned_cols=285  Identities=10%  Similarity=-0.030  Sum_probs=174.0

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TN   70 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~   70 (434)
                      +..++|||||+.++...+.....+..|.|||..+++.+.++...     ..+.+.|||||++|+...           ++
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~-----~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-----FLPNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC-----CCccEEEcCCCCEEEEEeecCCcccccccce
Confidence            46788999999998766444345578999999999999887653     223689999999998763           36


Q ss_pred             eEEEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           71 EIQFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                      .|.+||............+.       .....+.|+|++ ..+.++...   ....+.+|+...   .+.....    ..
T Consensus        98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~---~~~~~~~~~~~~---~~~~~~~----~~  166 (373)
T d2madh_          98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFA---AGPAVGLVVQGG---SSDDQLL----SS  166 (373)
T ss_pred             EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC-CcEEEEEEc---CCCceEEeeccC---CeEEEEe----cc
Confidence            79999998755322222221       123456788884 333333221   124567777655   3333222    22


Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee------cCCCCCeEEEEECcCCCEEEEEEccC
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP------LRKEGPVHDVQWSYSGSEFAVVYGFM  217 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~------l~~~~~i~~v~wspdg~~~av~~g~~  217 (434)
                      ...+.++++|+.+++....  |..         +..++..........      .........+.+++++..++   ...
T Consensus       167 ~~~~~~s~~g~~~~v~~~~--dg~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  232 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCA--QGG---------LAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW---PVY  232 (373)
T ss_pred             ceeEEEecCCCcEEEEEcC--CCe---------EEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEE---ecC
Confidence            3467789999887654332  211         233332222111110      00111233456666654444   234


Q ss_pred             CCeEEEEecccceeEEe---------------CCcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEE
Q 013871          218 PASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       218 ~~~v~l~d~~~~~~~~~---------------~~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~  275 (434)
                      ++.+.+|+.....+...               .......+.++|+|..++....+.       ..+.+.+||..+++.+.
T Consensus       233 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~  312 (373)
T d2madh_         233 SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS  312 (373)
T ss_pred             CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE
Confidence            56777777654332111               122334578888888776654322       24689999999999888


Q ss_pred             EeeCC-CceEEEECCCCCEE--EEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          276 TTRAE-CSVTSEWSPDGRYF--MTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       276 ~~~~~-~~~~~~wspdg~~l--~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      .+... .+..++|||||+++  ++++.      |+.|+|||. +|+++...
T Consensus       313 ~~~~~~~~~~~a~spDG~~~l~vt~~~------d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         313 QISLGHDVDAISVAQDGGPDLYALSAG------TEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EecCCCCeeEEEECCCCCEEEEEEeCC------CCeEEEEECCCCCEEEEE
Confidence            87654 56679999999964  44555      999999999 57766654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.5e-17  Score=151.94  Aligned_cols=251  Identities=13%  Similarity=0.112  Sum_probs=167.5

Q ss_pred             CcEEEEEeecCcCCCCCCeeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCC
Q 013871           36 GEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESK  114 (434)
Q Consensus        36 g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~  114 (434)
                      .++++++.+|.   ..+.+++|+|    |+++ .|++|++||....     ...|...|.++.++++ ..++..      
T Consensus         3 ~~~i~~l~gH~---~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~------   63 (287)
T d1pgua2           3 DEVLKTISGHN---KGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSI------   63 (287)
T ss_dssp             EEEEEEECCCS---SCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEE------
T ss_pred             cceeEEECCCC---CceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEE------
Confidence            45677877654   7888999987    5555 6789999997642     2345667899999876 333332      


Q ss_pred             CCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCC
Q 013871          115 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK  194 (434)
Q Consensus       115 ~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~  194 (434)
                      +.++.+++|++...          .+......+.+++++..++..    .+.         .+..++.... .....+..
T Consensus        64 s~D~~v~~w~~~~~----------~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~~~~~~~-~~~~~~~~  119 (287)
T d1pgua2          64 SWDDTLKVNGITKH----------EFGSQPKVASANNDGFTAVLT----NDD---------DLLILQSFTG-DIIKSVRL  119 (287)
T ss_dssp             ETTTEEEETTEEEE----------ECSSCEEEEEECSSSEEEEEE----TTS---------EEEEEETTTC-CEEEEEEC
T ss_pred             eecccccccccccc----------ccccceeeeeeccCCceEEEe----ecc---------cceeeeccce-eeeeeccc
Confidence            45578999987541          122334567778877665432    111         2233332222 12222222


Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-eEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD  270 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~  270 (434)
                      ..+  ..+++|++..+++ .+..++.+.+|++.... ...+   +.+.+++++|+|+|.+|++++   .+|.|++||+.+
T Consensus       120 ~~~--~~~~~~~~~~~~v-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~i~d~~~  193 (287)
T d1pgua2         120 NSP--GSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD---VMGKILLYDLQS  193 (287)
T ss_dssp             SSC--EEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred             cce--eeeeeccCcceee-eccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc---ccccccceeecc
Confidence            333  3566788888886 35555689999986433 2332   567899999999999999998   567999999999


Q ss_pred             CEEEEE-eeCC--CceEEEECCC----------CCEEEEEEcCCceeeCCcEEEEeecC--ceeee--eecccceeeEEE
Q 013871          271 GKQLGT-TRAE--CSVTSEWSPD----------GRYFMTATTAPRLQIDNGIKIFHHNG--SLFFK--KMFDKLFQAEWK  333 (434)
Q Consensus       271 ~~~i~~-~~~~--~~~~~~wspd----------g~~l~tas~~prl~~D~~i~iw~~~g--~~~~~--~~~~~~~~~~w~  333 (434)
                      ++.+.. +..|  .+..++|+|+          +.+|++++.      |+.|+||++..  +++..  .+...+..+.|.
T Consensus       194 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~------D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL------DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET------TSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred             cccccccccccccccceeeecccccccccccCCCCeeEeecC------CCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence            976654 3444  5666999875          568999999      99999999843  33332  256789999999


Q ss_pred             cCCCCCCCC
Q 013871          334 PVSPDKFGD  342 (434)
Q Consensus       334 p~~~~~~~~  342 (434)
                      |.. .+++.
T Consensus       268 ~~~-~l~s~  275 (287)
T d1pgua2         268 TPS-TLVSS  275 (287)
T ss_dssp             ETT-EEEEE
T ss_pred             CCC-EEEEE
Confidence            975 35543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=8e-18  Score=164.00  Aligned_cols=145  Identities=11%  Similarity=0.018  Sum_probs=92.9

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCc--EEEEEeecCcCCCCCCeeeecCCCcEE-EEe-cCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGE--AVYQLFQKNMTKTTWPSIRFSSDEAVA-CRM-ATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~--~~~~~~~~~~~~~~~~~~~~S~d~~~l-a~~-~~~~i~v~~~   77 (434)
                      +..++|||||+||++.+     .|+.|.+||+.+++  .+..+.....+...+.++.|||||++| +++ .+++|.+||.
T Consensus        64 ~~~v~fSpDG~~l~~~s-----~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~  138 (432)
T d1qksa2          64 VHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  138 (432)
T ss_dssp             EEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             eeEEEECCCCCEEEEEc-----CCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeC
Confidence            57899999999999988     78999999998876  334443322122333366899999987 444 4689999999


Q ss_pred             CCCCCceeeeee-----------cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-cccee
Q 013871           78 TDFPKGILYRLR-----------VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-RCSTV  145 (434)
Q Consensus        78 ~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~~~~~  145 (434)
                      ...........+           ......+.+||++ ..+.+-.    ...+.|.+|+..+   .+........ .....
T Consensus       139 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~~~~vs~----~~~~~i~~~d~~~---~~~~~~~~i~~g~~~~  210 (432)
T d1qksa2         139 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR-PEFIVNV----KETGKILLVDYTD---LNNLKTTEISAERFLH  210 (432)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-SEEEEEE----TTTTEEEEEETTC---SSEEEEEEEECCSSEE
T ss_pred             ccccceeeeccCCccccceeccCCCceeEEEECCCC-CEEEEEE----ccCCeEEEEEccC---CCcceEEEEcccCccc
Confidence            876543322221           1234456677763 3322211    2346788888866   3433333322 23446


Q ss_pred             EEEECCCCCeEEEE
Q 013871          146 QLNWNRGSTGLLAV  159 (434)
Q Consensus       146 ~~~ws~~G~~l~~~  159 (434)
                      .+.++|+|+++++.
T Consensus       211 ~~~~spdg~~~~va  224 (432)
T d1qksa2         211 DGGLDGSHRYFITA  224 (432)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             cceECCCCCEEEEe
Confidence            78999999987664

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.9e-17  Score=151.20  Aligned_cols=281  Identities=9%  Similarity=0.082  Sum_probs=163.4

Q ss_pred             EEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEE
Q 013871           31 WKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVF  109 (434)
Q Consensus        31 Wd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~  109 (434)
                      |+..+.++...+.+|.   ..+.+ ++++||++||+++ |++|+|||+.+.........|...|.+++|+|+   .++. 
T Consensus         1 W~~~~~~~~~~l~GH~---~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~---~l~s-   72 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHD---DHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN---IIIS-   72 (342)
T ss_dssp             HHHSCCCCCEEEECST---TSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT---EEEE-
T ss_pred             CCCCCCCcCEEECCcC---CceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC---cccc-
Confidence            4445556666676653   55533 4777899999985 679999999886654445556778999999975   3332 


Q ss_pred             ecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEE-----------------EC-CCCCeEEEEEEecc-------
Q 013871          110 VPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLN-----------------WN-RGSTGLLAVAQSDV-------  164 (434)
Q Consensus       110 ~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------ws-~~G~~l~~~~~~~~-------  164 (434)
                          .+.++.+++|+...   ..................                 |. ..+...........       
T Consensus        73 ----~s~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
T d2ovrb2          73 ----GSTDRTLKVWNAET---GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  145 (342)
T ss_dssp             ----EETTSCEEEEETTT---TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             ----ceeccccccccccc---ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc
Confidence                24556788888765   222211111111111110                 11 11111100000000       


Q ss_pred             -cccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCee
Q 013871          165 -DKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYN  240 (434)
Q Consensus       165 -d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~  240 (434)
                       ............+...+.... .....+. ........+++++..++  ++..|+.|++||++. ..+..+  |...+.
T Consensus       146 ~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~--s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         146 DGRRVVSGAYDFMVKVWDPETE-TCLHTLQ-GHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTS  221 (342)
T ss_dssp             CSSCEEEEETTSCEEEEEGGGT-EEEEEEC-CCSSCEEEEEECSSEEE--EEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred             ccceeeeecCCCeEEEeecccc-eeeEEEc-CcccccccccCCCCEEE--EEeCCCeEEEeecccceeeeEeccccccee
Confidence             000000000011222222211 1111121 12233455566788877  678899999999964 444444  566677


Q ss_pred             EEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cC
Q 013871          241 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NG  316 (434)
Q Consensus       241 ~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g  316 (434)
                      ++.++  +++|++++   .+|.|++||....+....+..+   .....++++++++|++|+.      |+.|+|||+ +|
T Consensus       222 ~~~~~--~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~------Dg~i~iwd~~tg  290 (342)
T d2ovrb2         222 GMELK--DNILVSGN---ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD------DGTVKLWDLKTG  290 (342)
T ss_dssp             EEEEE--TTEEEEEE---TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET------TSEEEEEETTTC
T ss_pred             EEecC--CCEEEEEc---CCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcC------CCEEEEEECCCC
Confidence            76665  56999998   5679999999988777766553   3334556667789999999      999999998 57


Q ss_pred             ceeeeee-------cccceeeEEEcCCCCCCC
Q 013871          317 SLFFKKM-------FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       317 ~~~~~~~-------~~~~~~~~w~p~~~~~~~  341 (434)
                      +++....       ...++.++|+|+...+..
T Consensus       291 ~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CEEEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence            7766542       235899999998654443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4.1e-18  Score=166.09  Aligned_cols=292  Identities=11%  Similarity=0.008  Sum_probs=173.6

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeec
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      -++++.+     .|+.|.|||+.+++++..+..+    ..+..++|||||+++++++ ++.|.+||+..........+..
T Consensus        33 ~~~v~~~-----d~g~v~v~D~~t~~v~~~~~~g----~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          33 LFSVTLR-----DAGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             EEEEEET-----TTTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             EEEEEEc-----CCCEEEEEECCCCcEEEEEeCC----CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            3446666     7899999999999999999765    3455899999999999875 6899999987755333333332


Q ss_pred             -CCeeEE----EEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----------cceeEEEECCCCC
Q 013871           91 -PGVAAF----EVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----------CSTVQLNWNRGST  154 (434)
Q Consensus        91 -~~v~~~----~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----------~~~~~~~ws~~G~  154 (434)
                       .+...+    .||||+ .++.+.    ...++.|+||+..+   .+.+.....+.           .....+.++++|.
T Consensus       104 ~~~~~~~~~s~~~SpDG-~~l~vs----~~~~~~v~i~d~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~  175 (432)
T d1qksa2         104 GSEARSIETSKMEGWED-KYAIAG----AYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP  175 (432)
T ss_dssp             CSEEEEEEECCSTTCTT-TEEEEE----EEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred             CCCCCCeEEecccCCCC-CEEEEE----cCCCCeEEEEeCcc---ccceeeeccCCccccceeccCCCceeEEEECCCCC
Confidence             223333    456674 444321    23457899999987   66665544332           2233456777777


Q ss_pred             eEEEEEEecccccCceeecceeEEEEeeCCcce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE-
Q 013871          155 GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-  232 (434)
Q Consensus       155 ~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~-~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~-  232 (434)
                      .+++...           ....++.++...... ....+.....+++++|+|||+++++. ......+.++|.+...+. 
T Consensus       176 ~~~vs~~-----------~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va-~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         176 EFIVNVK-----------ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA-ANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EEEEEET-----------TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE-EGGGTEEEEEETTTTEEEE
T ss_pred             EEEEEEc-----------cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEe-ccccceEEEeecccceEEE
Confidence            6554321           111244454433222 22233445678999999999998875 444668999998654433 


Q ss_pred             Ee-------CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC-------EEEEEeeCC--CceEEEEC--------
Q 013871          233 EL-------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------KQLGTTRAE--CSVTSEWS--------  288 (434)
Q Consensus       233 ~~-------~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~-------~~i~~~~~~--~~~~~~ws--------  288 (434)
                      .+       +........+...|...+....+  ++.|.+|+....       +.......+  ....+..+        
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg--~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~  321 (432)
T d1qksa2         244 IEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV  321 (432)
T ss_dssp             EEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred             EeccCccccccCcccceecCCCCceecccccC--CceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceee
Confidence            22       22333445555555555554432  367888876532       222222211  11111222        


Q ss_pred             ----------------CCCCEEEEEEcCCceeeCCcEEEEeecC-ceeeeeecccceeeEEEcCCCCCCC
Q 013871          289 ----------------PDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       289 ----------------pdg~~l~tas~~prl~~D~~i~iw~~~g-~~~~~~~~~~~~~~~w~p~~~~~~~  341 (434)
                                      |||+.|++++.      |+.+++|++.. ..+. .+...+.+++|+|++..++.
T Consensus       322 ~~~~~~~~~~~~sv~vpDg~~la~~s~------d~~~k~w~~~~~~~l~-~~~~~v~~~~fS~DG~~v~~  384 (432)
T d1qksa2         322 DATLNPEAEISGSVAVFDIKAMTGDGS------DPEFKTLPIAEWAGIT-EGQPRVVQGEFNKDGTEVWF  384 (432)
T ss_dssp             ECTTCSSHHHHTCEEEEEGGGCCCSSS------CCCEEEECHHHHHTCC-SSCCEEEEEEECTTSSEEEE
T ss_pred             cccCCCCCCeeeEEEEEechhhccccc------CCceEecccccccccC-CCCCcEEEeEECCCCCEEEE
Confidence                            55555555555      77788887632 2221 23346788999999987643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=5.7e-18  Score=156.56  Aligned_cols=266  Identities=11%  Similarity=-0.007  Sum_probs=164.9

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeee---eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEE
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYR---LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIY  123 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~  123 (434)
                      |.+.+.+++||||+++||+++ |++|+|||+..........   .|...|.+++|+|+++..++.     ++.++.|++|
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~s-----g~~d~~v~~w   84 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV-----GTVQGEILKV   84 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEE-----EETTSCEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEE-----cccccceeee
Confidence            557888999999999999985 7899999987644322221   245679999999985555553     3556789999


Q ss_pred             EcCCCCCCCceeeeeecccce-eEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecC---CCCCe
Q 013871          124 ACGKDLQSQPLARRSFFRCST-VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLR---KEGPV  198 (434)
Q Consensus       124 ~~~~~~~~~~i~~~~~~~~~~-~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~---~~~~i  198 (434)
                      ++..   .............. ....+.+++..++.. +  .+.+...|       .+...... .....+.   .....
T Consensus        85 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~w-------d~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          85 DLIG---SPSFQALTNNEANLGICRICKYGDDKLIAA-S--WDGLIEVI-------DPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             CSSS---SSSEEECBSCCCCSCEEEEEEETTTEEEEE-E--TTSEEEEE-------CHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             eccc---cccccccccccccccccccccccccccccc-c--ccccccee-------eccccccceeeeccccccccccee
Confidence            9977   44444333333332 333444444544332 1  33333322       11111100 0011111   12344


Q ss_pred             EEEEECcCCCEEEEEEccCCCeEEEEecccce---e--EEe-CCcCeeEEEE-CCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          199 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---I--LEL-GSGPYNTVRW-NPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       199 ~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~---~--~~~-~~~~~~~i~~-SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ..+.+.+++..++  .+..++.+.+||++...   .  ... ......+..+ ++++..+++++   .+|.+.+|+....
T Consensus       152 ~~~~~~~~~~~~~--~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~~v~~~~~~  226 (342)
T d1yfqa_         152 KIFTMDTNSSRLI--VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS---IDGRVAVEFFDDQ  226 (342)
T ss_dssp             CEEEEEECSSEEE--EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE---TTSEEEEEECCTT
T ss_pred             eeeeeeccCCcee--eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec---CCCeEEEEEecCC
Confidence            5677778888887  46778999999985322   1  111 2334445454 45667888887   5679999997643


Q ss_pred             E---------EEEEee------CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec-Cceeeeee-cccceeeEE
Q 013871          272 K---------QLGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKM-FDKLFQAEW  332 (434)
Q Consensus       272 ~---------~i~~~~------~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~-g~~~~~~~-~~~~~~~~w  332 (434)
                      .         ......      .+  .+..++|+|+|++|+||+.      |+.|+|||+. ++.+.... ......++|
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~------Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~  300 (342)
T d1yfqa_         227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS------DGIISCWNLQTRKKIKNFAKFNEDSVVKI  300 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET------TSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred             cceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC------CCEEEEEECCCCcEEEEecCCCCCEEEEE
Confidence            1         111111      11  3456999999999999999      9999999995 45555543 355667888


Q ss_pred             EcCCCCCCCC
Q 013871          333 KPVSPDKFGD  342 (434)
Q Consensus       333 ~p~~~~~~~~  342 (434)
                      .|.+..++.+
T Consensus       301 s~~~~~l~~a  310 (342)
T d1yfqa_         301 ACSDNILCLA  310 (342)
T ss_dssp             EECSSEEEEE
T ss_pred             EeCCCEEEEE
Confidence            9988776654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=7.7e-17  Score=151.40  Aligned_cols=282  Identities=10%  Similarity=-0.012  Sum_probs=178.0

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeEE
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEIQ   73 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i~   73 (434)
                      .+.||||+.++...+.....+..|.|||+.+|+.+.++...     ..+.++|||||++|+...           ++.|.
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-----~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-----FLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-----SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-----CCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            46799999997665433334678999999999998888653     334789999999887542           46899


Q ss_pred             EEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc-----
Q 013871           74 FFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR-----  141 (434)
Q Consensus        74 v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~-----  141 (434)
                      +||..+...........       .....+.|+|++ ..+.+...   .....+.+|+...   ...+.......     
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQF---SPAPAVGVVDLEG---KAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEEC---SSSCEEEEEETTT---TEEEEEEECCSEEEEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecC---CCCceeeeeecCC---CcEeeEEecCCcceEe
Confidence            99998755322222211       134567899984 44444322   2335778888876   45444433221     


Q ss_pred             --cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 013871          142 --CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA  219 (434)
Q Consensus       142 --~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~  219 (434)
                        .....+.++++|+.+++....  +..         +..+.....     .......+....+++++..++.  ...++
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~--~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~  216 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGT--EGT---------PEITHTEVF-----HPEDEFLINHPAYSQKAGRLVW--PTYTG  216 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCS--SSC---------CEEEECCCC-----SCTTSCBCSCCEEETTTTEEEE--EBTTS
T ss_pred             ecCCcceEEEcCCCCEEEEEecC--CCe---------EEEEecccc-----cceecceeeeccccCCCCeEEE--ecCCC
Confidence              223346677888776543111  111         111111111     0111233455678888888874  45678


Q ss_pred             eEEEEecccceeEEe-----C----------CcCeeEEEECCCCCeEEEEecCC-------CCCeEEEEEccCCEEEEEe
Q 013871          220 SATIFNKKCRPILEL-----G----------SGPYNTVRWNPKGKFLCLAGFGN-------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~-----~----------~~~~~~i~~SP~g~~l~~~~~~~-------~~g~i~iwd~~~~~~i~~~  277 (434)
                      .+.+|++....+..+     +          ......++++|+|..++++..+.       ....|.+||..+++.+..+
T Consensus       217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~  296 (355)
T d2bbkh_         217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF  296 (355)
T ss_dssp             EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEe
Confidence            999999865433221     1          12334689999999887764322       1247999999999888777


Q ss_pred             eCC-CceEEEECCCCCE-E-EEEEcCCceeeCCcEEEEee-cCceeeee
Q 013871          278 RAE-CSVTSEWSPDGRY-F-MTATTAPRLQIDNGIKIFHH-NGSLFFKK  322 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~~-l-~tas~~prl~~D~~i~iw~~-~g~~~~~~  322 (434)
                      ..+ .+..++|||||+. | +++..      |+.|+|||. +|+++...
T Consensus       297 ~~~~~~~~~a~spDG~~~l~v~~~~------d~~i~v~D~~tg~~~~~i  339 (355)
T d2bbkh_         297 EMGHEIDSINVSQDEKPLLYALSTG------DKTLYIHDAESGEELRSV  339 (355)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT------TTEEEEEETTTCCEEEEE
T ss_pred             cCCCCEEEEEEcCCCCeEEEEEECC------CCEEEEEECCCCCEEEEE
Confidence            543 5567999999984 3 34444      899999998 67766554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.5e-17  Score=158.00  Aligned_cols=99  Identities=22%  Similarity=0.383  Sum_probs=78.7

Q ss_pred             CCCCeEEEEECcCCCEEEEEEccCCC---eEEEEeccc-ceeEEe---------------CCcCeeEEEECCCCCeEEEE
Q 013871          194 KEGPVHDVQWSYSGSEFAVVYGFMPA---SATIFNKKC-RPILEL---------------GSGPYNTVRWNPKGKFLCLA  254 (434)
Q Consensus       194 ~~~~i~~v~wspdg~~~av~~g~~~~---~v~l~d~~~-~~~~~~---------------~~~~~~~i~~SP~g~~l~~~  254 (434)
                      +..+|.+++|+|||+.|+.  |..|+   .+++||++. ..+..+               |.+.|++++|||+|++|+++
T Consensus       230 h~~~V~~l~~spdg~~l~s--gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         230 NSNSIRSVKFSPQGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             CCCCEEEEEECSSTTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEEcccccccceeee--ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            3679999999999999984  55554   589999863 333322               67789999999999999999


Q ss_pred             ecCCCCCeEEEEEccCCEEEEEeeCCC--c----eEEEECCCCCEEEEE
Q 013871          255 GFGNLPGDMAFWDYVDGKQLGTTRAEC--S----VTSEWSPDGRYFMTA  297 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~~~~~i~~~~~~~--~----~~~~wspdg~~l~ta  297 (434)
                      +   .||+|+|||+++++++.++.+|.  +    ..++|+|+|..++++
T Consensus       308 s---~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         308 G---WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             E---TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             C---CCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9   66799999999999999998872  1    137888888876544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=2.1e-15  Score=139.75  Aligned_cols=267  Identities=10%  Similarity=0.077  Sum_probs=160.2

Q ss_pred             CCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCCCCCceee--eee-cCCeeEEEE
Q 013871           24 QEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTDFPKGILY--RLR-VPGVAAFEV   98 (434)
Q Consensus        24 ~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~~~~~~~~--~~~-~~~v~~~~~   98 (434)
                      +|++|+||++.+...+..+.... +...+..++|||||++|+.+.  ++.|++|++.........  ... ...+..++|
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~   90 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIST   90 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEE
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEE
Confidence            68999999996543332222111 125566899999999986553  679999998754322222  122 234678999


Q ss_pred             eCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEE
Q 013871           99 SKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLN  178 (434)
Q Consensus        99 sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~  178 (434)
                      +|+ +.++++..    .....|.+|+..... .........+......+.++|+|+.+++....  +..         +.
T Consensus        91 spD-g~~l~v~~----~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~--~~~---------i~  153 (333)
T d1ri6a_          91 DHQ-GQFVFVGS----YNAGNVSVTRLEDGL-PVGVVDVVEGLDGCHSANISPDNRTLWVPALK--QDR---------IC  153 (333)
T ss_dssp             CTT-SSEEEEEE----TTTTEEEEEEEETTE-EEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--GTE---------EE
T ss_pred             cCC-CCEEeecc----cCCCceeeecccccc-ceecccccCCCccceEEEeeecceeeeccccc--cce---------ee
Confidence            999 45554432    224578888876521 11222233344455678899999987654211  111         22


Q ss_pred             EEeeCCcc------eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeccc--ce---eEEe--------CCcCe
Q 013871          179 YLTTDGTH------EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RP---ILEL--------GSGPY  239 (434)
Q Consensus       179 ~l~~~~~~------~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~--~~---~~~~--------~~~~~  239 (434)
                      .++.....      ..............++|++++..+.+. ....+...+++...  ..   ....        .....
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             EEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            22211110      111122234456789999999887764 45566777776531  11   1111        12345


Q ss_pred             eEEEECCCCCeEEEEecCCCCCeEEEEEccCC----EEEEEee-CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          240 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       240 ~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----~~i~~~~-~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      ..++++|+|++++.++.+.  +.+.+|++...    +...... +..+..++|||||++|+++...     ++.|+||++
T Consensus       233 ~~~~~s~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~-----~~~v~v~~i  305 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTA--SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-----SHHISVYEI  305 (333)
T ss_dssp             EEEEECTTSSEEEEEETTT--TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT-----TCEEEEEEE
T ss_pred             eeEEEecccCceeeecccC--CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC-----CCeEEEEEE
Confidence            6789999999888877543  68999987643    2222222 2355679999999999888763     789999987


Q ss_pred             cC
Q 013871          315 NG  316 (434)
Q Consensus       315 ~g  316 (434)
                      +.
T Consensus       306 d~  307 (333)
T d1ri6a_         306 VG  307 (333)
T ss_dssp             ET
T ss_pred             EC
Confidence            43

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.2e-15  Score=135.98  Aligned_cols=253  Identities=10%  Similarity=0.118  Sum_probs=160.5

Q ss_pred             CCCCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcC
Q 013871           48 TKTTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACG  126 (434)
Q Consensus        48 ~~~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~  126 (434)
                      +...+.|  +++|+++||+++ |++|+|||+.+.......+.|...|.+++|.   +.+++.     ++.++.|++|++.
T Consensus        14 ~~~~V~c--~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s-----~s~D~~i~~~~~~   83 (293)
T d1p22a2          14 TSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIIT-----GSSDSTVRVWDVN   83 (293)
T ss_dssp             SCCCEEE--EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEE-----EETTSCEEEEESS
T ss_pred             CCCCEEE--EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeec-----ccccccccccccc
Confidence            3455645  456899999984 6899999998866544555567788887764   344443     3567899999998


Q ss_pred             CCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceee-eecCCCCCeEEEEECc
Q 013871          127 KDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSY  205 (434)
Q Consensus       127 ~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~v~wsp  205 (434)
                      .   +............  ...+......++...   .+...       .++.+......... ....+...+..+.+.+
T Consensus        84 ~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  148 (293)
T d1p22a2          84 T---GEMLNTLIHHCEA--VLHLRFNNGMMVTCS---KDRSI-------AVWDMASPTDITLRRVLVGHRAAVNVVDFDD  148 (293)
T ss_dssp             S---CCEEEEECCCCSC--EEEEECCTTEEEEEE---TTSCE-------EEEECSSSSCCEEEEEECCCSSCEEEEEEET
T ss_pred             c---ccccccccccccc--cccccccccceeecc---cccce-------eEeeccccccccccccccccccccccceecc
Confidence            7   4444433332222  233344444443321   22222       12222211111111 1223456777777765


Q ss_pred             CCCEEEEEEccCCCeEEEEeccc-ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCc
Q 013871          206 SGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS  282 (434)
Q Consensus       206 dg~~~av~~g~~~~~v~l~d~~~-~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~  282 (434)
                      +  .++  ++..|+.+.+||++. +.+..+  +...+..+.+  ++.++++++   .+|.|++||+++.+.+....++..
T Consensus       149 ~--~~~--~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~  219 (293)
T d1p22a2         149 K--YIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS---SDNTIRLWDIECGACLRVLEGHEE  219 (293)
T ss_dssp             T--EEE--EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE---TTSCEEEEETTTCCEEEEECCCSS
T ss_pred             c--ccc--cccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEec---CCCEEEEEecccceeeeeecccce
Confidence            3  444  355689999999964 445555  4455555555  467888888   567999999999999998888866


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc----------eeee--eecccceeeEEEcCCCCCCCC
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----------LFFK--KMFDKLFQAEWKPVSPDKFGD  342 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~----------~~~~--~~~~~~~~~~w~p~~~~~~~~  342 (434)
                      ....+++++.+|++++.      |+.|+||++...          .+..  .+...++.++|.|  ..+++.
T Consensus       220 ~v~~~~~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~~l~s~  283 (293)
T d1p22a2         220 LVRCIRFDNKRIVSGAY------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSS  283 (293)
T ss_dssp             CEEEEECCSSEEEEEET------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--SCEEEC
T ss_pred             eeeeccccceEEEEEcC------CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--CEEEEE
Confidence            66788999999999999      999999998432          2222  2445788888854  344443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=6.8e-15  Score=136.07  Aligned_cols=253  Identities=8%  Similarity=0.033  Sum_probs=153.3

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEec-----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMA-----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~-----------   68 (434)
                      +.+++|||||++|+..+    ..++.|.+||+.+++.+..+.....  +...+..++|+||+++++.+.           
T Consensus        36 ~~~i~~spDg~~l~v~~----~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          36 PMVPMVAPGGRIAYATV----NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCEEECTTSSEEEEEE----TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             ccEEEECCCCCEEEEEE----CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            46899999999986543    1578999999999999887765321  112344789999999887663           


Q ss_pred             --CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           69 --TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        69 --~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                        ++.+.+||......  ...+. ...+..+.++|++...++.        .+.+.+|+...   .+.+........ ..
T Consensus       112 ~~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~--------~~~~~~~d~~~---~~~~~~~~~~~~-~~  177 (337)
T d1pbyb_         112 VQPTRVALYDAETLSR--RKAFEAPRQITMLAWARDGSKLYGL--------GRDLHVMDPEA---GTLVEDKPIQSW-EA  177 (337)
T ss_dssp             ECCCEEEEEETTTTEE--EEEEECCSSCCCEEECTTSSCEEEE--------SSSEEEEETTT---TEEEEEECSTTT-TT
T ss_pred             ccccceeeccccCCeE--EEeccccCCceEEEEcCCCCEEEEE--------cCCcceeeeec---CcEEEEeecCCc-cc
Confidence              34788888876432  22222 3457789999995443331        12356777765   444433332211 11


Q ss_pred             EEEECCCCCeE-----------EEEEEecc-cccCceeecceeEEEEeeCCcceeee-ecCCCCCeEEEEECcCCCEEEE
Q 013871          146 QLNWNRGSTGL-----------LAVAQSDV-DKTNQSYYGESKLNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAV  212 (434)
Q Consensus       146 ~~~ws~~G~~l-----------~~~~~~~~-d~~~~~~~g~~~l~~l~~~~~~~~~v-~l~~~~~i~~v~wspdg~~~av  212 (434)
                      ...+++++..+           ........ ............++.++......... .......+..++++|++..++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG  257 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE
Confidence            11222322221           11111101 11111111112234444333221211 1223556778899999988875


Q ss_pred             EEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC
Q 013871          213 VYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA  279 (434)
Q Consensus       213 ~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~  279 (434)
                      .    ++.+.+||++... +..+ +...+.+++|||||++|++++   .+|+|.|||.++++.+..+..
T Consensus       258 ~----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~---~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         258 A----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG---ALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             E----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES---BSSEEEEEETTTCCEEEEEEC
T ss_pred             c----cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe---CCCcEEEEECCCCcEEEEEEC
Confidence            3    3689999997544 4444 456678999999999999987   457999999999998888764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-14  Score=134.74  Aligned_cols=253  Identities=8%  Similarity=0.051  Sum_probs=147.1

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--CCeEEEEeCCC
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--TNEIQFFDTTD   79 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~~~i~v~~~~~   79 (434)
                      |..|+|||||++|++...    .|+.|.+|++........+............++|+|||++|+.+.  ++.|.+|+...
T Consensus        39 v~~la~spDG~~L~v~~~----~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          39 VQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EeEEEEeCCCCEEEEEEC----CCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            578999999999976652    578999999976543222222211113334799999999988874  45899998765


Q ss_pred             CCCceeee--eecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeee------ecccceeEEEECC
Q 013871           80 FPKGILYR--LRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRS------FFRCSTVQLNWNR  151 (434)
Q Consensus        80 ~~~~~~~~--~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~------~~~~~~~~~~ws~  151 (434)
                      ........  .+...+.++.++|++...+.. ..    ....+.+|+....   .......      ........+.|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~-~~----~~~~i~~~~~~~~---~~~~~~~~~~~~~~~g~~p~~i~~~~  186 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVP-AL----KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVFHP  186 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEE-EG----GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEECT
T ss_pred             ccceecccccCCCccceEEEeeecceeeecc-cc----ccceeeEEEeccC---CcceeeeceeeeeecCCCccEEEEec
Confidence            43222222  223457788999985433322 11    2246778887552   2211111      1123335788999


Q ss_pred             CCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eee-e----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 013871          152 GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLV-P----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATI  223 (434)
Q Consensus       152 ~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v-~----l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l  223 (434)
                      ++..+.......  ...       .++.+.......   ..+ .    .........+++++|++++.+. +..++.+.+
T Consensus       187 ~~~~~~~~~~~~--~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~-~~~~~~~~~  256 (333)
T d1ri6a_         187 NEQYAYCVNELN--SSV-------DVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC-DRTASLITV  256 (333)
T ss_dssp             TSSEEEEEETTT--TEE-------EEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE-ETTTTEEEE
T ss_pred             cceeEEeecccc--Cce-------EEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee-cccCCeEEE
Confidence            998765542111  110       111111111000   001 0    1113456789999999987764 566778999


Q ss_pred             Eeccc--ceeE--Ee--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEE--ccCCE--EEEEee
Q 013871          224 FNKKC--RPIL--EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD--YVDGK--QLGTTR  278 (434)
Q Consensus       224 ~d~~~--~~~~--~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd--~~~~~--~i~~~~  278 (434)
                      |++..  ....  ..  .......++|||||++|++++.+  ++.|.+|+  .++++  .+..+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~--~~~v~v~~id~~tG~l~~~~~~~  319 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK--SHHISVYEIVGEQGLLHEKGRYA  319 (333)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--TCEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECC--CCeEEEEEEECCCCcEEEEEecc
Confidence            87642  2111  11  23445689999999998887643  36899984  55664  344444

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=4.5e-14  Score=130.96  Aligned_cols=256  Identities=10%  Similarity=-0.038  Sum_probs=153.2

Q ss_pred             cceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC---CCCCCeeeecCCCcEEEEec----------
Q 013871            2 LLLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT---KTTWPSIRFSSDEAVACRMA----------   68 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~---~~~~~~~~~S~d~~~la~~~----------   68 (434)
                      +.+|+|||||++|+....    .++.|.+||+.+++.+.++......   ......++|||||++++...          
T Consensus        42 p~~l~~spDG~~l~v~~~----~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~  117 (346)
T d1jmxb_          42 PGTAMMAPDNRTAYVLNN----HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  117 (346)
T ss_dssp             SCEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             cceEEECCCCCEEEEEEC----CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeee
Confidence            458999999999865541    5688999999999998877653211   01234789999999887652          


Q ss_pred             ---CCeEEEEeCCCCCCceeeeee--cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccc
Q 013871           69 ---TNEIQFFDTTDFPKGILYRLR--VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCS  143 (434)
Q Consensus        69 ---~~~i~v~~~~~~~~~~~~~~~--~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~  143 (434)
                         +..+.+|+.............  ...+..+.++++ +..+ ++       ...+.+|++.+   .+.+....... .
T Consensus       118 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-------~~~~~~~~~~~---~~~~~~~~~~~-~  184 (346)
T d1jmxb_         118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD-GSLY-VA-------GPDIYKMDVKT---GKYTVALPLRN-W  184 (346)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT-SCEE-EE-------SSSEEEECTTT---CCEEEEECSTT-C
T ss_pred             ccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC-CEEE-Ee-------CCcceEEEccC---CCEEEEEecCC-C
Confidence               356788887653322222221  223445555555 2222 21       13467777765   45444433322 2


Q ss_pred             eeEEEECCCCCeEEEEEE-----------ecccccCc---eeecceeEEEEeeCCcceee-eecCCCCCeEEEEECcCCC
Q 013871          144 TVQLNWNRGSTGLLAVAQ-----------SDVDKTNQ---SYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGS  208 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~-----------~~~d~~~~---~~~g~~~l~~l~~~~~~~~~-v~l~~~~~i~~v~wspdg~  208 (434)
                      ...+.++|+|..+++...           ........   .......+..++........ ........+..+.++|++.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (346)
T d1jmxb_         185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP  264 (346)
T ss_dssp             CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred             ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC
Confidence            234445665554322110           00000000   00111223444433322222 2223456788899999998


Q ss_pred             EEEEEEccCCCeEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871          209 EFAVVYGFMPASATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       209 ~~av~~g~~~~~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      .++...   .+.+.+||..... +..+ ....+.+++|||||++|++++   .+|.|.|||.++++.+..+..+
T Consensus       265 ~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~---~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         265 NQIYGV---LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG---TFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             TEEEEE---ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES---BSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEec---CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECccCCEEEEEECC
Confidence            887532   3489999996544 4444 345688999999999999998   4579999999999999888754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=3.1e-13  Score=127.33  Aligned_cols=266  Identities=8%  Similarity=-0.079  Sum_probs=152.7

Q ss_pred             eEEecCCCcEEEEEecCC-----CCCCCcEEEEEcCCCcEEEEEeecCcCC----CCCCeeeecCCCcEEEEec---CCe
Q 013871            4 LLTCLRVGLIIQTFQKSS-----TPQEKNVILWKTETGEAVYQLFQKNMTK----TTWPSIRFSSDEAVACRMA---TNE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~-----~~~d~~v~iWd~~~g~~~~~~~~~~~~~----~~~~~~~~S~d~~~la~~~---~~~   71 (434)
                      .++|||||++|++.....     ...++.|.|||+.+++.+..+.......    ..-..+.|++|++.++...   ++.
T Consensus        70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  149 (373)
T d2madh_          70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence            589999999999876432     2346789999999999888765543110    0112578999999776542   458


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------cccee
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------RCSTV  145 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------~~~~~  145 (434)
                      +.+|+.....    ...+......+.++|++...+...     ..++.+.+|+...   ..........      .....
T Consensus       150 ~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~~~v~~-----~~dg~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  217 (373)
T d2madh_         150 VGLVVQGGSS----DDQLLSSPTCYHIHPGAPSTFYLL-----CAQGGLAKTDHAG---GAAGAGLVGAMLTAAQNLLTQ  217 (373)
T ss_pred             eEEeeccCCe----EEEEeccceeEEEecCCCcEEEEE-----cCCCeEEEEEcCC---ceeeEEEeeeccccCccceee
Confidence            8888876632    222333456788899865544332     2346788888766   3332222111      11122


Q ss_pred             EEEECCCCCeEEEEEEecccccCceee-cceeEEEEe---eCCcceeeeecCCCCCeEEEEECcCCCEEEEE--------
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYY-GESKLNYLT---TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVV--------  213 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~-g~~~l~~l~---~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~--------  213 (434)
                      .+.+.+++..+...    .+.....+. ....+..+.   .......... ...+....++++|++..+++.        
T Consensus       218 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  292 (373)
T d2madh_         218 PAQANKSGRIVWPV----YSGKILQADISAAGATNKAPIDALSGGRKADT-WRPGGWQQVAYLKSSDGIYLLTSEQSAWK  292 (373)
T ss_pred             eEEECCCceEEEec----CCceEEEEEcCCCeEEEEEeeccccCcEEeee-eccCcceeeEEecCCCeEEEecCCCceEE
Confidence            33445544433221    111111110 000011111   0110000011 113455678888888876643        


Q ss_pred             EccCCCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCeEE--EEecCCCCCeEEEEEccCCEEEEEeeCC--CceEEEE
Q 013871          214 YGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLC--LAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW  287 (434)
Q Consensus       214 ~g~~~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~l~--~~~~~~~~g~i~iwd~~~~~~i~~~~~~--~~~~~~w  287 (434)
                      ....++.+.+||... +.+..+ +...+..++|||||+.++  +++   .++.|++||+.+++.+..+..+  ....++.
T Consensus       293 ~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~---~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~  369 (373)
T d2madh_         293 LHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA---GTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             eecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeC---CCCeEEEEECCCCCEEEEECCCCCCCcEEEE
Confidence            233456788999864 445555 456788999999999643  333   4579999999999999998743  4444554


Q ss_pred             CC
Q 013871          288 SP  289 (434)
Q Consensus       288 sp  289 (434)
                      .+
T Consensus       370 ~~  371 (373)
T d2madh_         370 MN  371 (373)
T ss_pred             ec
Confidence            43

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=5.5e-13  Score=130.33  Aligned_cols=306  Identities=8%  Similarity=0.016  Sum_probs=161.7

Q ss_pred             cceEEecCCCcEEEEEecCC----CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeC
Q 013871            2 LLLLTCLRVGLIIQTFQKSS----TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDT   77 (434)
Q Consensus         2 V~~l~fSP~g~~L~t~~~~~----~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~   77 (434)
                      |.++.|||||++|++.+...    -..++.+.|||+.+++. ..+....   ..+..+.|||||+++|+..++.+.+|+.
T Consensus        64 i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~---~~~~~~~~SPDG~~ia~~~~~~l~~~~~  139 (470)
T d2bgra1          64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIP---NNTQWVTWSPVGHKLAYVWNNDIYVKIE  139 (470)
T ss_dssp             CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCC---TTEEEEEECSSTTCEEEEETTEEEEESS
T ss_pred             cceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCC---ccccccccccCcceeeEeecccceEEEC
Confidence            57889999999999876211    12356899999998874 3343332   4555899999999999999999999998


Q ss_pred             CCCCCceeeee------------------ecCCeeEEEEeCCCCCeEEEEecCCCC------------------------
Q 013871           78 TDFPKGILYRL------------------RVPGVAAFEVSKAPGSHVAVFVPESKG------------------------  115 (434)
Q Consensus        78 ~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~~ia~~~~~~~~------------------------  115 (434)
                      ...........                  .......+.|||+ +..|++..-+...                        
T Consensus       140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~  218 (470)
T d2bgra1         140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPY  218 (470)
T ss_dssp             TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEEC
T ss_pred             CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC-CCccceeEecCCcCceEEEEeeccCCCCCCeeeeecc
Confidence            76432111110                  0112456789999 5666655321110                        


Q ss_pred             -------CCceEEEEEcCCCCCCCceeeee------e--cccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEE
Q 013871          116 -------SPASVQIYACGKDLQSQPLARRS------F--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL  180 (434)
Q Consensus       116 -------~~~~v~i~~~~~~~~~~~i~~~~------~--~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l  180 (434)
                             ....+.+|++.............      +  .......+.|++++..+........+..      ...++.+
T Consensus       219 ~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~------~~~~~~~  292 (470)
T d2bgra1         219 PKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYS------VMDICDY  292 (470)
T ss_dssp             CBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEE------EEEEEEE
T ss_pred             ccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCce------EEEEEEe
Confidence                   01134455554311000000000      0  0112346788888864433322211100      0113333


Q ss_pred             eeCCcceeeee------cCCCC-----CeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEe--CCcCeeEEEEC
Q 013871          181 TTDGTHEGLVP------LRKEG-----PVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWN  245 (434)
Q Consensus       181 ~~~~~~~~~v~------l~~~~-----~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~--~~~~~~~i~~S  245 (434)
                      +........+.      ....+     .-....|+++++.+.+.....++  .+.+|+..+.....+  +...+..+ ++
T Consensus       293 d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~  371 (470)
T d2bgra1         293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EA  371 (470)
T ss_dssp             ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EE
T ss_pred             cCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EE
Confidence            33222111110      00011     11245677777766555566666  456667776666655  34445555 45


Q ss_pred             CCCCeEEEEec--CCCCC--eEEEEEccCCEEEEEee----CC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-
Q 013871          246 PKGKFLCLAGF--GNLPG--DMAFWDYVDGKQLGTTR----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-  314 (434)
Q Consensus       246 P~g~~l~~~~~--~~~~g--~i~iwd~~~~~~i~~~~----~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-  314 (434)
                      ++++.+...+.  +...+  .|+-.++..+.....+.    .+  ....++|||||+|++...+.|.   .-.+.||+. 
T Consensus       372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~---~P~~~l~~~~  448 (470)
T d2bgra1         372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG---LPLYTLHSSV  448 (470)
T ss_dssp             ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS---SCEEEEEETT
T ss_pred             ECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCC---CCeEEEEECC
Confidence            55665543322  11222  24544555443333322    22  4556999999999887666433   234777776 


Q ss_pred             cCceeeee
Q 013871          315 NGSLFFKK  322 (434)
Q Consensus       315 ~g~~~~~~  322 (434)
                      +|+.+...
T Consensus       449 ~g~~v~~l  456 (470)
T d2bgra1         449 NDKGLRVL  456 (470)
T ss_dssp             TTEEEEEE
T ss_pred             CCCEEEEE
Confidence            56555543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5e-12  Score=113.48  Aligned_cols=256  Identities=11%  Similarity=0.053  Sum_probs=151.4

Q ss_pred             cEEEEEecCC-CCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----CeEEEEeCCCCCCceee
Q 013871           12 LIIQTFQKSS-TPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----NEIQFFDTTDFPKGILY   86 (434)
Q Consensus        12 ~~L~t~~~~~-~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----~~i~v~~~~~~~~~~~~   86 (434)
                      +.||...... +..+.+|.|-|...+. ...+....   ..+..++|||||+.||+...    ..+.+.+...... ...
T Consensus         4 ~~iay~~~~~~~~~~~~l~i~d~dG~~-~~~l~~~~---~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~   78 (269)
T d2hqsa1           4 TRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQV   78 (269)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEES---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEE
T ss_pred             CeEEEEEEeCCCCceEEEEEEcCCCCC-cEEEecCC---CceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEE
Confidence            4555444322 2223378888865444 34443322   34448999999999998743    2566666655332 233


Q ss_pred             eeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccc
Q 013871           87 RLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        87 ~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      .........+.|||+ +..+++.....+.  ..+..+...    ..................|++++..+++.....   
T Consensus        79 ~~~~~~~~~~~~spd-g~~i~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  148 (269)
T d2hqsa1          79 ASFPRHNGAPAFSPD-GSKLAFALSKTGS--LNLYVMDLA----SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA---  148 (269)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEECTTSS--CEEEEEETT----TCCEEECCCCSSCEEEEEECTTSSEEEEEECTT---
T ss_pred             eeeecccccceecCC-CCeeeEeeecCCc--cceeecccc----cccceeeeeccccccccccccccccceeccccc---
Confidence            344556788999999 4555554433221  122222222    222222333334445667888888776543211   


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEecccceeEEe-CCcCeeEEEE
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCRPILEL-GSGPYNTVRW  244 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~-~~v~l~d~~~~~~~~~-~~~~~~~i~~  244 (434)
                            |...++..+..+.....+. ..........|+|+|+.++....... ..+.++|........+ +........|
T Consensus       149 ------g~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~  221 (269)
T d2hqsa1         149 ------GRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSL  221 (269)
T ss_dssp             ------SSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ------CCceEeeeecccccceeee-cccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEE
Confidence                  3335677766665333332 23566778999999999997644321 1555667665444433 4556677899


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCC-CceEEEECC
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSP  289 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wsp  289 (434)
                      ||||+.|+..+..+....|++++++.+......... .+...+|||
T Consensus       222 SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         222 APNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence            999999987765444568999999877655444433 334589998

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=5.4e-13  Score=124.54  Aligned_cols=259  Identities=10%  Similarity=0.016  Sum_probs=143.1

Q ss_pred             ceEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcCC----CCCCeeeecCCCcEEEEec---CC
Q 013871            3 LLLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMTK----TTWPSIRFSSDEAVACRMA---TN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~~----~~~~~~~~S~d~~~la~~~---~~   70 (434)
                      ..++|||||++|++.+..     .+..|+.|.|||+.+++.+..+.......    .....+.|++|+++++...   +.
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  129 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP  129 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence            468999999999875521     11236789999999999988776533211    1223679999999887653   35


Q ss_pred             eEEEEeCCCCCCceeeeeecC---------CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc
Q 013871           71 EIQFFDTTDFPKGILYRLRVP---------GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR  141 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~  141 (434)
                      .+.+|+.......  ..+...         ....+.+++++ ..+.+...    ..+.+.+++....   ...     ..
T Consensus       130 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg-~~~~v~~~----~~~~~~~~~~~~~---~~~-----~~  194 (355)
T d2bbkh_         130 AVGVVDLEGKAFK--RMLDVPDCYHIFPTAPDTFFMHCRDG-SLAKVAFG----TEGTPEITHTEVF---HPE-----DE  194 (355)
T ss_dssp             EEEEEETTTTEEE--EEEECCSEEEEEEEETTEEEEEETTS-CEEEEECC----SSSCCEEEECCCC---SCT-----TS
T ss_pred             eeeeeecCCCcEe--eEEecCCcceEeecCCcceEEEcCCC-CEEEEEec----CCCeEEEEecccc---cce-----ec
Confidence            8999998774322  222222         22345566652 33222211    1122333333321   110     00


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeec-----------C-CCCCeEEEEECcCCCE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-----------R-KEGPVHDVQWSYSGSE  209 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l-----------~-~~~~i~~v~wspdg~~  209 (434)
                      .......+.+++..++...   .+.         .++.++..+.....+..           . .......++++|++..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~---~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         195 FLINHPAYSQKAGRLVWPT---YTG---------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             CBCSCCEEETTTTEEEEEB---TTS---------EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             ceeeeccccCCCCeEEEec---CCC---------eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            1111233444555443321   111         12333322221111100           0 0123456899999998


Q ss_pred             EEEEEccC--------CCeEEEEeccc-ceeEEe-CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871          210 FAVVYGFM--------PASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       210 ~av~~g~~--------~~~v~l~d~~~-~~~~~~-~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      +++.....        ...+.+||... +.+..+ ....+.+++|||||+. |++++.  .++.|.+||+++++.+.++.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~--~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEEC--CCCEEEEEECCCCCEEEEEe
Confidence            88654321        13789999864 444444 3455788999999984 333332  34799999999999999886


Q ss_pred             CC--CceEEEECCC
Q 013871          279 AE--CSVTSEWSPD  290 (434)
Q Consensus       279 ~~--~~~~~~wspd  290 (434)
                      .+  ....+...++
T Consensus       341 ~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         341 QLGHGPQVITTADM  354 (355)
T ss_dssp             CCCSSCCEEECCCC
T ss_pred             CcCCCccEEEeCCC
Confidence            53  4444544443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.53  E-value=4.2e-13  Score=126.82  Aligned_cols=282  Identities=7%  Similarity=-0.082  Sum_probs=164.7

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-----------CCeE
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-----------TNEI   72 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-----------~~~i   72 (434)
                      .++.+|+|+.....-......+.+|.+||..+++.+.......     .+.++|||||++++...           ++.|
T Consensus        24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~-----~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v   98 (368)
T d1mdah_          24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF-----LSLAVAGHSGSDFALASTSFARSAKGKRTDYV   98 (368)
T ss_dssp             CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT-----TCEEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred             ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC-----CCcceECCCCCEEEEEcccCccccccccCCeE
Confidence            4567888886543322222234568888999999888776542     23689999999888753           3579


Q ss_pred             EEEeCCCCCCceeeeeec-------CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecc----
Q 013871           73 QFFDTTDFPKGILYRLRV-------PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFR----  141 (434)
Q Consensus        73 ~v~~~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~----  141 (434)
                      .+||...........++.       .....++|||++ .++++..    ..++.+.+|++..   .+.+.......    
T Consensus        99 ~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-k~l~va~----~~~~~v~~~d~~~---~~~~~~~~~~~~~~~  170 (368)
T d1mdah_          99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFL----FGSSAAAGLSVPG---ASDDQLTKSASCFHI  170 (368)
T ss_dssp             EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEE----CSSSCEEEEEETT---TEEEEEEECSSCCCC
T ss_pred             EEEECCCCcEeeeecCCccceecccCCccceEECCCC-CEEEEEe----CCCCeEEEEECCC---CcEeEEeeccCcceE
Confidence            999998754322222221       123468999994 5554432    2356899999987   55555544322    


Q ss_pred             ---cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          142 ---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       142 ---~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                         .....+.+++||+.+.+...   +....       .+.... .     ........+..+.+.+++..+..  .  .
T Consensus       171 ~~~~~~~~v~~~~Dg~~~~~~~~---~~~~~-------~~~~~~-~-----~~~~~~~~~~~~~~~~~g~~~~~--~--~  230 (368)
T d1mdah_         171 HPGAAATHYLGSCPASLAASDLA---AAPAA-------AGIVGA-Q-----CTGAQNCSSQAAQANYPGMLVWA--V--A  230 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECC---SSCCC-------CEECCC-C-----SCTTSCBCSCCEEETTTTEEEEC--B--S
T ss_pred             ccCCCceEEEEcCCCCEEEEEec---CCcee-------eeeeec-c-----cccccccceeecccccCcEEEEe--c--C
Confidence               12233455666665433211   11111       011000 0     00011334456777777755542  1  3


Q ss_pred             CeEEEEecccceeEEe---------------CCcCeeEEEECCCCCeEEEEecCC------CCCeEEEEEccCCEEEEEe
Q 013871          219 ASATIFNKKCRPILEL---------------GSGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVDGKQLGTT  277 (434)
Q Consensus       219 ~~v~l~d~~~~~~~~~---------------~~~~~~~i~~SP~g~~l~~~~~~~------~~g~i~iwd~~~~~~i~~~  277 (434)
                      +.+.+++.........               .......++++|++..+++...+.      ....|.+||..+++.+..+
T Consensus       231 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~  310 (368)
T d1mdah_         231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI  310 (368)
T ss_dssp             SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred             CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe
Confidence            3566666543322211               112234689999999776653221      1246999999999988877


Q ss_pred             eCC-CceEEEECCCCCE-EEEEEcCCceeeCCcEEEEee-cCceeeeee
Q 013871          278 RAE-CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHH-NGSLFFKKM  323 (434)
Q Consensus       278 ~~~-~~~~~~wspdg~~-l~tas~~prl~~D~~i~iw~~-~g~~~~~~~  323 (434)
                      ... .+..++|||||+. ++++...     |+.|+|||. +|+.+...+
T Consensus       311 ~~~~~~~~~a~spDG~~~ly~s~~~-----~~~v~v~D~~tgk~~~~i~  354 (368)
T d1mdah_         311 SNGHDSDAIIAAQDGASDNYANSAG-----TEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEECEEEECCSSSCEEEEEETT-----TTEEEEEESSSCEEEEECC
T ss_pred             cCCCceeEEEECCCCCEEEEEEeCC-----CCeEEEEECCCCCEEEEEE
Confidence            654 4455999999984 3333332     899999997 577665543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=1.1e-11  Score=120.95  Aligned_cols=316  Identities=11%  Similarity=0.032  Sum_probs=169.6

Q ss_pred             eEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCc--CCCCCCeeeecCCCcEEEEecC----------Ce
Q 013871            4 LLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNM--TKTTWPSIRFSSDEAVACRMAT----------NE   71 (434)
Q Consensus         4 ~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~--~~~~~~~~~~S~d~~~la~~~~----------~~   71 (434)
                      .+.|++||.|+..       .|+.+.+||+.+|+....+..+..  +...+.+++|||||++|++..+          +.
T Consensus        21 ~~~W~~d~~~~~~-------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          21 SLRWISDHEYLYK-------QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCEECSSSEEEEE-------SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             CCEeCCCCEEEEE-------cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence            5789999998864       578899999999987655543321  2245678999999999998643          47


Q ss_pred             EEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-----------
Q 013871           72 IQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-----------  140 (434)
Q Consensus        72 i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-----------  140 (434)
                      +.+||+..... .....+...+..+.|||+ +..+|+.. +     ..+.+|++..   +..+......           
T Consensus        94 ~~l~d~~~~~~-~~l~~~~~~~~~~~~SPD-G~~ia~~~-~-----~~l~~~~~~~---g~~~~~t~~~~~~~~~~g~~d  162 (470)
T d2bgra1          94 YDIYDLNKRQL-ITEERIPNNTQWVTWSPV-GHKLAYVW-N-----NDIYVKIEPN---LPSYRITWTGKEDIIYNGITD  162 (470)
T ss_dssp             EEEEETTTTEE-CCSSCCCTTEEEEEECSS-TTCEEEEE-T-----TEEEEESSTT---SCCEECCSCCBTTTEEESBCC
T ss_pred             EEEEECCCCcc-cccccCCccccccccccC-cceeeEee-c-----ccceEEECCC---CceeeeeeccCCCcccccccc
Confidence            88999987432 223344567899999999 56666532 2     3677777765   3333221111           


Q ss_pred             -------ccceeEEEECCCCCeEEEEEEecccccCcee----e----------------------cceeEEEEeeCCcce
Q 013871          141 -------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSY----Y----------------------GESKLNYLTTDGTHE  187 (434)
Q Consensus       141 -------~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~----~----------------------g~~~l~~l~~~~~~~  187 (434)
                             ......+.|||||++|++....+..  ...+    +                      ....++.+++.+...
T Consensus       163 ~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~  240 (470)
T d2bgra1         163 WVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE--VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSS  240 (470)
T ss_dssp             HHHHHHTSSSSBCEEECTTSSEEEEEEEECTT--CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCS
T ss_pred             eeeeeeecCCccccEECCCCCccceeEecCCc--CceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcce
Confidence                   1123457899999998876422110  1100    0                      111233333322211


Q ss_pred             eeeec-----------CCCCCeEEEEECcCCCEEEEEEcc-CCC-eEEEE--ecccceeEEe---------CCc-----C
Q 013871          188 GLVPL-----------RKEGPVHDVQWSYSGSEFAVVYGF-MPA-SATIF--NKKCRPILEL---------GSG-----P  238 (434)
Q Consensus       188 ~~v~l-----------~~~~~i~~v~wspdg~~~av~~g~-~~~-~v~l~--d~~~~~~~~~---------~~~-----~  238 (434)
                      .....           .....+..+.|.+++..++..... .+. .+.++  |........+         ..+     .
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~  320 (470)
T d2bgra1         241 VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFR  320 (470)
T ss_dssp             SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSS
T ss_pred             eeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeeccc
Confidence            11100           012335679999998766653222 221 34444  4433332211         111     1


Q ss_pred             eeEEEECCCCC-eEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee--c
Q 013871          239 YNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--N  315 (434)
Q Consensus       239 ~~~i~~SP~g~-~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~--~  315 (434)
                      -....|++++. +++..+.......|++|+...++......+...+.-.+++|+..++..+....- .-..-.||.+  .
T Consensus       321 ~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~-~p~~~~ly~v~~~  399 (470)
T d2bgra1         321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKG-MPGGRNLYKIQLS  399 (470)
T ss_dssp             CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEEEECSSEEEEEESCGGG-CTTCBEEEEEETT
T ss_pred             CCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEEEEECCCEEEEEEecCCC-CcceEEEEEEECC
Confidence            12345556554 333333322334677778776666555555533332245555555443321000 0012346655  3


Q ss_pred             Cc-eeee------eecccceeeEEEcCCCCCC
Q 013871          316 GS-LFFK------KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       316 g~-~~~~------~~~~~~~~~~w~p~~~~~~  340 (434)
                      |. ....      .+...++.+.++|++.+++
T Consensus       400 g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~  431 (470)
T d2bgra1         400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ  431 (470)
T ss_dssp             CTTCEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred             CCCceeEecccccCCCCCEEEEEECCCCCEEE
Confidence            32 1111      1223578999999998755

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=9.8e-11  Score=104.82  Aligned_cols=243  Identities=11%  Similarity=0.110  Sum_probs=149.8

Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEEC
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWN  150 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws  150 (434)
                      +|.|.|...... ....-....+.+.+|||| +..||+.....  ....+.+++..    .........+........|+
T Consensus        20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPD-GSKLAYVTFES--GRSALVIQTLA----NGAVRQVASFPRHNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSC-EEEEEESSCEEEEEECTT-SSEEEEEECTT--SSCEEEEEETT----TCCEEEEECCSSCEEEEEEC
T ss_pred             EEEEEcCCCCCc-EEEecCCCceeeeEECCC-CCEEEEEEeec--cCcceeeeecc----cCceeEEeeeecccccceec
Confidence            577777765433 333334556789999999 67887765432  22334444443    34455666777777889999


Q ss_pred             CCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeccc
Q 013871          151 RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC  228 (434)
Q Consensus       151 ~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~  228 (434)
                      |+|+.+++.....    +.     ..+........ ................|++++..+.+.+ ..++  .+.++++..
T Consensus        92 pdg~~i~~~~~~~----~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          92 PDGSKLAFALSKT----GS-----LNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTS-DQAGRPQVYKVNING  160 (269)
T ss_dssp             TTSSEEEEEECTT----SS-----CEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTS
T ss_pred             CCCCeeeEeeecC----Cc-----cceeecccccc-cceeeeeccccccccccccccccceecc-cccCCceEeeeeccc
Confidence            9999987753221    11     11222222221 1222222244556678999888877654 3344  667777765


Q ss_pred             ceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeC
Q 013871          229 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQID  306 (434)
Q Consensus       229 ~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D  306 (434)
                      ......  .........|||+|+.++....++..-.|.+.|...+...............|||||++|+..+..   +-.
T Consensus       161 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~---~~~  237 (269)
T d2hqsa1         161 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ---GMG  237 (269)
T ss_dssp             SCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE---TTE
T ss_pred             ccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC---CCC
Confidence            544443  345556789999999999887665334566666666654444344455668999999999987751   012


Q ss_pred             CcEEEEeecCceeeeeec--ccceeeEEEcC
Q 013871          307 NGIKIFHHNGSLFFKKMF--DKLFQAEWKPV  335 (434)
Q Consensus       307 ~~i~iw~~~g~~~~~~~~--~~~~~~~w~p~  335 (434)
                      ..+.+++.+|....+...  ..+....|+|.
T Consensus       238 ~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         238 SVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             cEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence            357888999987655433  34667889985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=3.1e-11  Score=113.73  Aligned_cols=252  Identities=7%  Similarity=-0.044  Sum_probs=135.7

Q ss_pred             ceEEecCCCcEEEEEecC-----CCCCCCcEEEEEcCCCcEEEEEeecCcC----C-CCCCeeeecCCCcEEEEe--cCC
Q 013871            3 LLLTCLRVGLIIQTFQKS-----STPQEKNVILWKTETGEAVYQLFQKNMT----K-TTWPSIRFSSDEAVACRM--ATN   70 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~-----~~~~d~~v~iWd~~~g~~~~~~~~~~~~----~-~~~~~~~~S~d~~~la~~--~~~   70 (434)
                      ..++|||||++|++.+..     .+..|+.|.+||..+++.+..+......    . ..+ .++|||||++++..  .++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~-~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCcc-ceEECCCCCEEEEEeCCCC
Confidence            357899999999987632     1234678999999999998887643210    1 223 68999999998876  357


Q ss_pred             eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceee---eeecccceeEE
Q 013871           71 EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLAR---RSFFRCSTVQL  147 (434)
Q Consensus        71 ~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~---~~~~~~~~~~~  147 (434)
                      .|.+||+.....  ...+..+....  ++|.+...+..+     ..++.+.++.+...........   ...........
T Consensus       147 ~v~~~d~~~~~~--~~~~~~~~~~~--~~~~~~~~~v~~-----~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T d1mdah_         147 AAAGLSVPGASD--DQLTKSASCFH--IHPGAAATHYLG-----SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA  217 (368)
T ss_dssp             CEEEEEETTTEE--EEEEECSSCCC--CEEEETTEEECC-----CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred             eEEEEECCCCcE--eEEeeccCcce--EccCCCceEEEE-----cCCCCEEEEEecCCceeeeeeecccccccccceeec
Confidence            999999887432  22233222111  111111111111     1123334444332110000000   00011122344


Q ss_pred             EECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee-----------cC-CCCCeEEEEECcCCCEEEEEEc
Q 013871          148 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-----------LR-KEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       148 ~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~-----------l~-~~~~i~~v~wspdg~~~av~~g  215 (434)
                      .+.++|..+..   ..    +       .++.++........+.           .. ..+....++++|++..+++...
T Consensus       218 ~~~~~g~~~~~---~~----~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~  283 (368)
T d1mdah_         218 QANYPGMLVWA---VA----S-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV  283 (368)
T ss_dssp             EETTTTEEEEC---BS----S-------CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             ccccCcEEEEe---cC----C-------CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEec
Confidence            55565543211   00    0       0111111111100000           00 0123346889999998876543


Q ss_pred             cCC-------CeEEEEecccc-eeEEe-CCcCeeEEEECCCCCe-EEEEecCCCCCeEEEEEccCCEEEEEeeCC
Q 013871          216 FMP-------ASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKF-LCLAGFGNLPGDMAFWDYVDGKQLGTTRAE  280 (434)
Q Consensus       216 ~~~-------~~v~l~d~~~~-~~~~~-~~~~~~~i~~SP~g~~-l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~  280 (434)
                      ..+       ..+.+||.+.. .+..+ ....+..++|||||+. |++.+.  .++.|+|||..+++.+..+...
T Consensus       284 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~--~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         284 EHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA--GTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             ECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET--TTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC--CCCeEEEEECCCCCEEEEEECC
Confidence            221       26889999754 34444 2456788999999984 444433  3469999999999999888743

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.9e-09  Score=104.74  Aligned_cols=302  Identities=11%  Similarity=0.056  Sum_probs=161.2

Q ss_pred             ceEEecCCCcEEEEEecCCC----CCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCC
Q 013871            3 LLLTCLRVGLIIQTFQKSST----PQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTT   78 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~----~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~   78 (434)
                      ....|||||++|+.......    ...+.+.|+|+.+++... +............+.|||||+.+|+..++.|.+.+..
T Consensus        64 ~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~  142 (465)
T d1xfda1          64 IRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV  142 (465)
T ss_dssp             SEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS
T ss_pred             ceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCceEEEEecceEEEEecC
Confidence            45679999999987653221    235789999999987532 3222111133445799999999999999999988876


Q ss_pred             CCCCceeeeeecC--------------------C-eeEEEEeCCCCCeEEEEecCCC-----------CC----------
Q 013871           79 DFPKGILYRLRVP--------------------G-VAAFEVSKAPGSHVAVFVPESK-----------GS----------  116 (434)
Q Consensus        79 ~~~~~~~~~~~~~--------------------~-v~~~~~sp~~~~~ia~~~~~~~-----------~~----------  116 (434)
                      ....   .++...                    + -..+.|||+ +..||++.-+..           +.          
T Consensus       143 ~~~~---~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPD-gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y  218 (465)
T d1xfda1         143 GKQA---IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY  218 (465)
T ss_dssp             SSCC---EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             CCce---EEEecccCcceeeccccchhhhhhhccccceEEECCC-CCeEEEEEecccccceeecccccccccceeeeeec
Confidence            5332   111111                    1 246789999 666766532110           00          


Q ss_pred             --------CceEEEEEcCCCCCCCceeeee--ec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeC
Q 013871          117 --------PASVQIYACGKDLQSQPLARRS--FF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD  183 (434)
Q Consensus       117 --------~~~v~i~~~~~~~~~~~i~~~~--~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~  183 (434)
                              ...+.++++....  .......  ..   ..-...+.|+++++.+ +.+.. .+...      ..++.++..
T Consensus       219 p~~G~~np~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~-~~~~n-R~q~~------~~i~~~d~~  288 (465)
T d1xfda1         219 PKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYITMVKWATSTKVA-VTWLN-RAQNV------SILTLCDAT  288 (465)
T ss_dssp             CBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEEEEEESSSSEEE-EEEEE-TTSCE------EEEEEEETT
T ss_pred             cccCCCCCceeEEEEecCCCc--EEEEEeccCcCccccceeeeeEEcCCCeEE-EEEEc-ccccc------ceEEEEcCC
Confidence                    0134556654421  1111110  01   1123568899998743 33222 22111      124555555


Q ss_pred             CcceeeeecC-CCC----CeEEEEECcCCCEEEEEEcc-CCC--eEEEEec-------ccceeEEeC--CcCeeE-EEEC
Q 013871          184 GTHEGLVPLR-KEG----PVHDVQWSYSGSEFAVVYGF-MPA--SATIFNK-------KCRPILELG--SGPYNT-VRWN  245 (434)
Q Consensus       184 ~~~~~~v~l~-~~~----~i~~v~wspdg~~~av~~g~-~~~--~v~l~d~-------~~~~~~~~~--~~~~~~-i~~S  245 (434)
                      .+....+..+ .++    .-....|+|||+.++++... .++  .+..+++       .+..+..+.  .-.|.. +.|+
T Consensus       289 tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d  368 (465)
T d1xfda1         289 TGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD  368 (465)
T ss_dssp             TCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE
T ss_pred             CCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEc
Confidence            4432222211 122    12357899999987765322 222  3333322       233334443  333455 4799


Q ss_pred             CCCCeEEEEecCCCCCe--EEEEEccCCE---EEEEe--eCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCc
Q 013871          246 PKGKFLCLAGFGNLPGD--MAFWDYVDGK---QLGTT--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGS  317 (434)
Q Consensus       246 P~g~~l~~~~~~~~~g~--i~iwd~~~~~---~i~~~--~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~  317 (434)
                      ++++.|...+.....+.  |+-.++....   ++...  .......+.|||||++++.....|.   --.+.|++. +|+
T Consensus       369 ~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~---~P~~~~~~~~~~~  445 (465)
T d1xfda1         369 EKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPG---VPMVTVHNTTDKK  445 (465)
T ss_dssp             TTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSS---SCCEEEEETTTCC
T ss_pred             CCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCC---CCeEEEEECCCCC
Confidence            99987776554333333  4444444332   22211  1223346899999999998777553   134566664 466


Q ss_pred             eeeee
Q 013871          318 LFFKK  322 (434)
Q Consensus       318 ~~~~~  322 (434)
                      .+...
T Consensus       446 ~~~~L  450 (465)
T d1xfda1         446 KMFDL  450 (465)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.30  E-value=1.8e-10  Score=109.80  Aligned_cols=294  Identities=10%  Similarity=0.092  Sum_probs=167.1

Q ss_pred             cEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCC-CCC-----------------------Ce---eeecCCCcEE
Q 013871           12 LIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTK-TTW-----------------------PS---IRFSSDEAVA   64 (434)
Q Consensus        12 ~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~-~~~-----------------------~~---~~~S~d~~~l   64 (434)
                      .|.+.++   +..++.|.||++.+++.+.++.--+... ..|                       +.   ...+|||++|
T Consensus        10 e~y~f~S---gg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2          10 EYYGFWS---GGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             SEEEEEE---CBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             CEEEEEe---CCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            3555555   2367899999999999988865421100 000                       12   2347899999


Q ss_pred             EEe--cCCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCCe-EEEEecCCC------------CCCceEEEEEcCCC
Q 013871           65 CRM--ATNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGSH-VAVFVPESK------------GSPASVQIYACGKD  128 (434)
Q Consensus        65 a~~--~~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~-ia~~~~~~~------------~~~~~v~i~~~~~~  128 (434)
                      ...  .+++|.++|+..+.......+. ..+...+.++|++... ++.......            .....+..++..+ 
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-  165 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET-  165 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT-
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc-
Confidence            766  4579999999987543333332 4578889999986543 332221110            0012344455544 


Q ss_pred             CCCCceeeeeecccceeEEEECCCCCeEEEEEEeccccc------C---------------------c-eeecceeEEEE
Q 013871          129 LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT------N---------------------Q-SYYGESKLNYL  180 (434)
Q Consensus       129 ~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~------~---------------------~-~~~g~~~l~~l  180 (434)
                        .....+.... .....+.++|+|+++.+.........      .                     + .+.+...+..+
T Consensus       166 --~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vv  242 (441)
T d1qnia2         166 --MDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV  242 (441)
T ss_dssp             --CSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred             --ceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEE
Confidence              4444444433 34567899999998765432211000      0                     0 01111112222


Q ss_pred             eeCCc--ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccce-----------eEEeC---CcCeeEEEE
Q 013871          181 TTDGT--HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-----------ILELG---SGPYNTVRW  244 (434)
Q Consensus       181 ~~~~~--~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~-----------~~~~~---~~~~~~i~~  244 (434)
                      +....  ....++.  ....+.+.++|||+++++ +|..++.+.+||++.-.           ....+   .-......|
T Consensus       243 d~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~-~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         243 DGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIA-NGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             ECSSSCSSEEEECC--BSSCCCEEECTTSCEEEE-ECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EcccCCceEEEEeC--CCCccCceECCCCCEEEE-eCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            21111  1122333  233578999999998887 68889999999974211           01111   111234589


Q ss_pred             CCCCCeEEEEecCCCCCeEEEEEccC----------CEEEEEeeC-----C--CceEEEECCCCCEEEEEEcCCcee---
Q 013871          245 NPKGKFLCLAGFGNLPGDMAFWDYVD----------GKQLGTTRA-----E--CSVTSEWSPDGRYFMTATTAPRLQ---  304 (434)
Q Consensus       245 SP~g~~l~~~~~~~~~g~i~iwd~~~----------~~~i~~~~~-----~--~~~~~~wspdg~~l~tas~~prl~---  304 (434)
                      .++|..+.+..   .+..|..|++..          ...+..+.-     |  .+....++|||+||+++.....-|   
T Consensus       320 d~~g~~yts~~---~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~  396 (441)
T d1qnia2         320 DGRGNAYTTLF---IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLP  396 (441)
T ss_dssp             CSSSEEEEEET---TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCC
T ss_pred             cCCceEEEccc---ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcC
Confidence            99998776665   556999999751          124444432     2  222367899999999996533211   


Q ss_pred             e----CCcEEEEeecCce
Q 013871          305 I----DNGIKIFHHNGSL  318 (434)
Q Consensus       305 ~----D~~i~iw~~~g~~  318 (434)
                      |    -..-++.|++|..
T Consensus       397 ~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         397 VGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             CSSSCCEEEEEEECSSSS
T ss_pred             CCCCCCccceeEEecCCe
Confidence            1    1247788888864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=6.3e-09  Score=97.71  Aligned_cols=159  Identities=13%  Similarity=0.079  Sum_probs=98.5

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEee--CCcce---eeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP  218 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~--~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~~g~~~  218 (434)
                      ...+.|+|+|+++++.. .          |...++.+..  .+...   .............++|+|+|+++.++ ...+
T Consensus       147 ~h~v~~sPdG~~l~v~d-~----------g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~-~e~~  214 (365)
T d1jofa_         147 IHGMVFDPTETYLYSAD-L----------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL-MEAG  214 (365)
T ss_dssp             EEEEEECTTSSEEEEEE-T----------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE-ETTT
T ss_pred             ceEEEECCCCCEEEEee-C----------CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEe-ccCC
Confidence            35788999999987642 1          1112333322  22111   11111223466889999999988774 6778


Q ss_pred             CeEEEEecccce---eEE---e---C-------------CcCeeEEEECCCCCeEEEEecCC---CCCeEEEEEccCC-E
Q 013871          219 ASATIFNKKCRP---ILE---L---G-------------SGPYNTVRWNPKGKFLCLAGFGN---LPGDMAFWDYVDG-K  272 (434)
Q Consensus       219 ~~v~l~d~~~~~---~~~---~---~-------------~~~~~~i~~SP~g~~l~~~~~~~---~~g~i~iwd~~~~-~  272 (434)
                      ++|.+|+.....   +..   .   .             ......+.++|||++|+++..++   ..+.|..|++... .
T Consensus       215 ~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         215 NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence            899999875321   111   1   0             01234689999999999886542   2345777776542 1


Q ss_pred             ---EEEEe----eCCCceEEEECC-CCCEEEEEEcCCceeeCCcEEEEeecCcee
Q 013871          273 ---QLGTT----RAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLF  319 (434)
Q Consensus       273 ---~i~~~----~~~~~~~~~wsp-dg~~l~tas~~prl~~D~~i~iw~~~g~~~  319 (434)
                         .....    .+.....++++| +|++|+++...     ++.|.||+++++.+
T Consensus       295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~-----s~~v~v~~~~~~~l  344 (365)
T d1jofa_         295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWKDEFL  344 (365)
T ss_dssp             EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEETTEE
T ss_pred             eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC-----CCeEEEEEEeCCcC
Confidence               11111    122455699998 89999988764     89999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.5e-09  Score=102.83  Aligned_cols=317  Identities=13%  Similarity=0.066  Sum_probs=164.5

Q ss_pred             EEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecC----------CeEEE
Q 013871            5 LTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMAT----------NEIQF   74 (434)
Q Consensus         5 l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~----------~~i~v   74 (434)
                      ..|++++.|+..      ..+++|.+||+.+++....+..............||||+++++...+          +.+.+
T Consensus        22 ~~W~~~~~~~~~------~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYR------EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCC------CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEE------eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence            356777776532      24678999999988763333333222234556789999999887643          47889


Q ss_pred             EeCCCCCCceeeee--ecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec------------
Q 013871           75 FDTTDFPKGILYRL--RVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF------------  140 (434)
Q Consensus        75 ~~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~------------  140 (434)
                      ||+...........  ....+....|||+ +..+|+.. +     ..+.+.+...   +..+......            
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPD-G~~iafv~-~-----~nl~~~~~~~---~~~~~lt~~g~~~~i~nG~~d~  165 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPK-GQQLIFIF-E-----NNIYYCAHVG---KQAIRVVSTGKEGVIYNGLSDW  165 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSS-TTCEEEEE-T-----TEEEEESSSS---SCCEEEECCCBTTTEEEEECCH
T ss_pred             EEccCCceeeccCccCCccccceeeeccC-CceEEEEe-c-----ceEEEEecCC---CceEEEecccCcceeeccccch
Confidence            99877543111111  1224566899999 45565432 2     2333333332   2222111100            


Q ss_pred             ------ccceeEEEECCCCCeEEEEEEecccc--------cCcee----------ec----ceeEEEEeeCCcceeeeec
Q 013871          141 ------RCSTVQLNWNRGSTGLLAVAQSDVDK--------TNQSY----------YG----ESKLNYLTTDGTHEGLVPL  192 (434)
Q Consensus       141 ------~~~~~~~~ws~~G~~l~~~~~~~~d~--------~~~~~----------~g----~~~l~~l~~~~~~~~~v~l  192 (434)
                            ......+-|||||++|++....+...        ....+          .|    ...|+.+++.+.......+
T Consensus       166 vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~  245 (465)
T d1xfda1         166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (465)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             hhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEe
Confidence                  01124678999999998864221110        00000          01    1246666665543322222


Q ss_pred             CC------CCCeEEEEECcCCCEEEEEEccCCC--eEEEEecccceeEEe----CCc----CeeEEEECCCCCeEEE--E
Q 013871          193 RK------EGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL----GSG----PYNTVRWNPKGKFLCL--A  254 (434)
Q Consensus       193 ~~------~~~i~~v~wspdg~~~av~~g~~~~--~v~l~d~~~~~~~~~----~~~----~~~~i~~SP~g~~l~~--~  254 (434)
                      ..      ..-+..+.|+|+++.++........  .+.++|........+    ..+    ......|+|||+.++.  .
T Consensus       246 ~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~  325 (465)
T d1xfda1         246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (465)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             ccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEe
Confidence            11      2236789999998755443222222  577788865544433    222    1245789999995443  2


Q ss_pred             ecCCCCCeEEEEEcc------CCEEEEE-eeCC-CceE-EEECCCCCEEEEEEcCCceeeCCcEEEEee--cCceeee--
Q 013871          255 GFGNLPGDMAFWDYV------DGKQLGT-TRAE-CSVT-SEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLFFK--  321 (434)
Q Consensus       255 ~~~~~~g~i~iwd~~------~~~~i~~-~~~~-~~~~-~~wspdg~~l~tas~~prl~~D~~i~iw~~--~g~~~~~--  321 (434)
                      ...+..+.++..++.      .++.+.. ..+. .+.. +.|+++++.|...+....   -..-+||.+  .|....+  
T Consensus       326 se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~---p~~~hly~v~l~g~~~~~~l  402 (465)
T d1xfda1         326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDL---PRRRQLYSANTVGNFNRQCL  402 (465)
T ss_dssp             ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSC---TTCCEEEEECSSTTCCCBCS
T ss_pred             eeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCC---CCceEEEEEECCCCCcceee
Confidence            211122355555432      2222222 2333 3344 689999998876554210   112345554  4432111  


Q ss_pred             ----eecccceeeEEEcCCCCCC
Q 013871          322 ----KMFDKLFQAEWKPVSPDKF  340 (434)
Q Consensus       322 ----~~~~~~~~~~w~p~~~~~~  340 (434)
                          .+......+.++|++.+++
T Consensus       403 t~~~~~~~~~~~~~~S~~~~y~v  425 (465)
T d1xfda1         403 SCDLVENCTYFSASFSHSMDFFL  425 (465)
T ss_dssp             STTSSSSCCCCEEEECTTSSEEE
T ss_pred             ccccCCCCCEEEEEECCCCCEEE
Confidence                1122456788888876654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.17  E-value=2.4e-09  Score=95.74  Aligned_cols=243  Identities=7%  Similarity=-0.036  Sum_probs=129.4

Q ss_pred             EEecCC--CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec--C-----CeEEEE
Q 013871            5 LTCLRV--GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA--T-----NEIQFF   75 (434)
Q Consensus         5 l~fSP~--g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~--~-----~~i~v~   75 (434)
                      +..|||  |++++...      +++|.+.|+.+|+. +.+....   .....++|||||+.||+..  +     ..|.++
T Consensus         4 ~~~sPdi~G~~v~f~~------~~dl~~~d~~~g~~-~~Lt~~~---~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~   73 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC------CDDLWEHDLKSGST-RKIVSNL---GVINNARFFPDGRKIAIRVMRGSSLNTADLYFY   73 (281)
T ss_dssp             CCEEEEEETTEEEEEE------TTEEEEEETTTCCE-EEEECSS---SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred             cccCCCCCCCEEEEEe------CCcEEEEECCCCCE-EEEecCC---CcccCEEECCCCCEEEEEEeeCCCCCceEEEEE
Confidence            457999  99998765      46799999998876 3444332   3344789999999999763  1     146666


Q ss_pred             eCCCCCCceeeeeec---------CCeeEEEEeCCCCCeEEEEecCC-CCCCceEEEEEcCCCCCCCceeeeeeccccee
Q 013871           76 DTTDFPKGILYRLRV---------PGVAAFEVSKAPGSHVAVFVPES-KGSPASVQIYACGKDLQSQPLARRSFFRCSTV  145 (434)
Q Consensus        76 ~~~~~~~~~~~~~~~---------~~v~~~~~sp~~~~~ia~~~~~~-~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~  145 (434)
                      +.....   ...+..         .......|+|+ +..+++..... ......+.+.+...    .......   ....
T Consensus        74 ~~~~g~---~~~lt~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~  142 (281)
T d1k32a2          74 NGENGE---IKRITYFSGKSTGRRMFTDVAGFDPD-GNLIISTDAMQPFSSMTCLYRVENDG----INFVPLN---LGPA  142 (281)
T ss_dssp             ETTTTE---EEECCCCCEEEETTEECSEEEEECTT-CCEEEEECTTSSSTTCCEEEEEEGGG----TEEEECC---SCSC
T ss_pred             EecCCc---eEEeeecCCCccCccccccccccCCC-CCEEEEEEccCCCccceeeeeecCCC----ceeEEec---CCcc
Confidence            665532   222221         13456789998 45554432221 12222333444332    2221111   1222


Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeEEEE
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASATIF  224 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~-~~~~v~l~  224 (434)
                      ...|.++|..++...............+............ ................++++.  ++..... ....|.++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~  219 (281)
T d1k32a2         143 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYST  219 (281)
T ss_dssp             SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEE
T ss_pred             ceeeecCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeeccc--cceecccccccceEEE
Confidence            3456666666554432221111111112111222222222 111122223445566676653  4432322 23378888


Q ss_pred             ecccceeEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEE
Q 013871          225 NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG  275 (434)
Q Consensus       225 d~~~~~~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~  275 (434)
                      |+.+.....+. ........|||||+.|+...    +|.|+++|+++++...
T Consensus       220 d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~----~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         220 DLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK----GGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             ETTSCSCEECCCCCSSCEEEEEESSSCEEEEE----TTEEEEECTTTCCEEE
T ss_pred             eCCCCceEEeecCCCcccccCcCCCCEEEEEe----CCEEEEEECCCCCEEE
Confidence            99877766653 22334457999999988754    3689999999886543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.08  E-value=1.9e-08  Score=89.78  Aligned_cols=245  Identities=11%  Similarity=0.024  Sum_probs=130.3

Q ss_pred             eeeecCC--CcEEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCC-CCCCceEEEEEcCCCCC
Q 013871           54 SIRFSSD--EAVACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPES-KGSPASVQIYACGKDLQ  130 (434)
Q Consensus        54 ~~~~S~d--~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~-~~~~~~v~i~~~~~~~~  130 (434)
                      .+..|||  |+.+|+..++.|.++++..... ....-....+....|||| +..|++..... ......+.+++...   
T Consensus         3 ~~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~---   77 (281)
T d1k32a2           3 NLLLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGEN---   77 (281)
T ss_dssp             CCCEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTT---
T ss_pred             CcccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEEecC---
Confidence            4457899  9999999989999999987442 222222345778999999 56676543322 22223455555543   


Q ss_pred             CCceeeeeecc-------cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEE
Q 013871          131 SQPLARRSFFR-------CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQW  203 (434)
Q Consensus       131 ~~~i~~~~~~~-------~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~w  203 (434)
                       ....+++...       .......|+|+|+.|++....  +....    ...++.++..+......   ..+... ..|
T Consensus        78 -g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~-~~~  146 (281)
T d1k32a2          78 -GEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAM--QPFSS----MTCLYRVENDGINFVPL---NLGPAT-HIL  146 (281)
T ss_dssp             -TEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTT--SSSTT----CCEEEEEEGGGTEEEEC---CSCSCS-EEE
T ss_pred             -CceEEeeecCCCccCccccccccccCCCCCEEEEEEcc--CCCcc----ceeeeeecCCCceeEEe---cCCccc-eee
Confidence             2333333222       233467899999998764221  11111    11234444444321111   122323 345


Q ss_pred             CcCCCEEEEEEccCCC----------eEEEEecc--cceeEEeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          204 SYSGSEFAVVYGFMPA----------SATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       204 spdg~~~av~~g~~~~----------~v~l~d~~--~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .+++..++......+.          ...+....  ................++++.  ++.....+....|+++|++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         147 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSC
T ss_pred             ecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccc--cceecccccccceEEEeCCCC
Confidence            5566555542222111          11122211  111122233444455666653  333333333468999999876


Q ss_pred             EEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee
Q 013871          272 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM  323 (434)
Q Consensus       272 ~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~  323 (434)
                      +..............|||||+.|+...       ++.|+++++.+.......
T Consensus       225 ~~~~lt~~~~~~~~~~SpDG~~I~f~~-------~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         225 DLRKHTSFTDYYPRHLNTDGRRILFSK-------GGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             SCEECCCCCSSCEEEEEESSSCEEEEE-------TTEEEEECTTTCCEEECC
T ss_pred             ceEEeecCCCcccccCcCCCCEEEEEe-------CCEEEEEECCCCCEEEec
Confidence            544333333333457999999988744       677888888776555443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.77  E-value=2e-06  Score=80.05  Aligned_cols=118  Identities=9%  Similarity=0.061  Sum_probs=73.4

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecc--ccee--EE---e-CCcCeeEEEECCCCCeEEEEecCCCCCeEEEE
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPI--LE---L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW  266 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~--~~~~--~~---~-~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iw  266 (434)
                      ...+|.+.|+|||+++++. .....+|.+|+..  +...  ..   . ....-..+.|+|+|+++.+...  .+++|.+|
T Consensus       144 ~~h~h~v~~sPdG~~l~v~-d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~  220 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSA-DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEY  220 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred             CCcceEEEECCCCCEEEEe-eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEE
Confidence            3468999999999999875 3444588888753  2211  11   1 2334567999999998877763  34799999


Q ss_pred             EccCCE--EE---EEeeC--------------C--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          267 DYVDGK--QL---GTTRA--------------E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       267 d~~~~~--~i---~~~~~--------------~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      |++..+  .+   .....              .  ....+.++|||++|+++...........|.+|++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            987542  22   11110              0  12348999999999887542100001226667663

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=1e-05  Score=72.06  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEeCC----cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGS----GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~~~----~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      .....+++.++|+.++  +....+.|.+||..++.+.++..    .....|++.|+|+++++-..+  ++.|.+|+. ++
T Consensus       157 ~~~~~i~~d~~g~i~v--~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~--~~~v~~f~~-~G  231 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFI--SDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN--NFNLTIFTQ-DG  231 (279)
T ss_dssp             SSEEEEEECSSSEEEE--EEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS--SCEEEEECT-TS
T ss_pred             cccceeeeccceeEEe--eeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCC--CcEEEEECC-CC
Confidence            4567788888886554  45556799999999888888742    234679999999966543322  257999985 57


Q ss_pred             EEEEEeeC----CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          272 KQLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       272 ~~i~~~~~----~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      +.+..+..    .....++..|||.++ ++..      ++.|++|.|..
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~-V~~~------n~~v~~fr~~~  273 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVV-LASK------DYRLYIYRYVQ  273 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEE-EEET------TTEEEEEECSC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEE-EEeC------CCeEEEEEeee
Confidence            76665543    246679999999754 4556      89999999853

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.70  E-value=2.2e-07  Score=88.10  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=114.8

Q ss_pred             CeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeeccc------------------------------ceeEEEECCCC
Q 013871          104 SHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRC------------------------------STVQLNWNRGS  153 (434)
Q Consensus       104 ~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~------------------------------~~~~~~ws~~G  153 (434)
                      .+++++   +++..+.|++|++++   .+.+..+..|..                              .......+|||
T Consensus        10 e~y~f~---Sgg~sG~V~V~dlpS---~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          10 EYYGFW---SGGHQGEVRVLGVPS---MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             SEEEEE---ECBTTCCEEEEEETT---TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             CEEEEE---eCCCCCcEEEEeCCC---CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC
Confidence            345554   345678899999988   666665543321                              01112234677


Q ss_pred             CeEEEEEEecccccCceeecceeEEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-------------
Q 013871          154 TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-------------  219 (434)
Q Consensus       154 ~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~-------------  219 (434)
                      ++|.+.     |+      +...+-.+++.... ..++.+......+.++|+|||+...|+......             
T Consensus        84 r~lfV~-----d~------~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          84 KYLFIN-----DK------ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEEEE-----ET------TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             CEEEEE-----cC------CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            776542     11      12235566655432 334455556789999999999976554443221             


Q ss_pred             ----eEEEEecccce-eEEe-CCcCeeEEEECCCCCeEEEEecCCC----------------------------------
Q 013871          220 ----SATIFNKKCRP-ILEL-GSGPYNTVRWNPKGKFLCLAGFGNL----------------------------------  259 (434)
Q Consensus       220 ----~v~l~d~~~~~-~~~~-~~~~~~~i~~SP~g~~l~~~~~~~~----------------------------------  259 (434)
                          .+..+|..... ..++ -.+....+.|+|+|++++++..+..                                  
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence                22345654332 2222 2344577999999999988865431                                  


Q ss_pred             ----CCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          260 ----PGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       260 ----~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                          ++.+.|++....+.+..+..+ .+..+..||||+|++++...     |++|.|||++
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~-----~~tvsv~d~~  288 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKL-----SPTVSVIAID  288 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTT-----SSBEEEEEGG
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCc-----CCcEEEEEee
Confidence                244455555554455555443 44459999999999887764     9999999984

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.59  E-value=4.6e-05  Score=68.96  Aligned_cols=107  Identities=10%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             EEEEECcCCC----EEEEEEccCCCeEEEEecccc-e------eEEeC---CcCeeEEEECCCCCeEEEEecCCCCCeEE
Q 013871          199 HDVQWSYSGS----EFAVVYGFMPASATIFNKKCR-P------ILELG---SGPYNTVRWNPKGKFLCLAGFGNLPGDMA  264 (434)
Q Consensus       199 ~~v~wspdg~----~~av~~g~~~~~v~l~d~~~~-~------~~~~~---~~~~~~i~~SP~g~~l~~~~~~~~~g~i~  264 (434)
                      +.++|+|+++    .|.+ +....++|..||+... .      ...+.   .+.-..+++..+|++.++.. +  .+.|.
T Consensus       175 NGi~~~~d~d~~~~~lyv-~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~-~--~g~I~  250 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIV-AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-G--SSHIE  250 (314)
T ss_dssp             EEEEEEECTTSCEEEEEE-EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-T--TTEEE
T ss_pred             eeeEECCCCCcceeEEEE-EeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-C--CCEEE
Confidence            5688888765    3444 4566778998887422 1      12222   12235689999999765443 3  36899


Q ss_pred             EEEccCCEEEEEee--CCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          265 FWDYVDGKQLGTTR--AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       265 iwd~~~~~~i~~~~--~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      +||.+.++.+..+.  ...++.|+|.||++.|..++..     .+.|...++
T Consensus       251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~-----~g~i~~~~~  297 (314)
T d1pjxa_         251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE-----NNAVWKFEW  297 (314)
T ss_dssp             EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEC
T ss_pred             EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC-----CCcEEEEEC
Confidence            99988776555444  3467779999999876655542     555555554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=9.4e-05  Score=67.00  Aligned_cols=241  Identities=8%  Similarity=0.038  Sum_probs=132.0

Q ss_pred             eeeecCCCcEEEEe-cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCC
Q 013871           54 SIRFSSDEAVACRM-ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQ  132 (434)
Q Consensus        54 ~~~~S~d~~~la~~-~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~  132 (434)
                      .+.|.++|++.++- .++.|+.|+...........-.......++++|++ .++.+..   .+......++.+...  ..
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~---~~~~~~~~i~~~~~~--~~  117 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYL---GDFKSTGGIFAATEN--GD  117 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEEC---TTSSSCCEEEEECTT--SC
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEec---CCCccceeEEEEcCC--Cc
Confidence            67999999865554 46789888876533211111122356788999985 3333221   111122233333221  11


Q ss_pred             ceeeeeec---ccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCE
Q 013871          133 PLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSE  209 (434)
Q Consensus       133 ~i~~~~~~---~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~  209 (434)
                      .+......   ......+.+.++|.. .+ ++.....    ......++.++..+.....+. ..-..-+.++|+||++.
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l-~v-td~~~~~----~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGF-YF-TDFRGYS----TNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKV  190 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCE-EE-EECCCBT----TBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSE
T ss_pred             eeeeeccCCCcccCCcceeEEeccce-ee-ccccccc----ccCcceeEEEecccceeEEEe-eccceeeeeeeccccce
Confidence            11111111   112345788999973 33 2221111    112234677766554322221 11123467999999998


Q ss_pred             EEEEEccCCCeEEEEecccc--eeE--------EeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871          210 FAVVYGFMPASATIFNKKCR--PIL--------ELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       210 ~av~~g~~~~~v~l~d~~~~--~~~--------~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      |.++ ....++|..||++..  ...        .+. ...-..+++.++|++.++.. +  .|.|.++|. +++.+..+.
T Consensus       191 lyva-d~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~--~g~V~~~~p-~G~~l~~i~  265 (319)
T d2dg1a1         191 LWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-G--QGRVLVFNK-RGYPIGQIL  265 (319)
T ss_dssp             EEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-T--TTEEEEECT-TSCEEEEEE
T ss_pred             EEEe-cccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-C--CCEEEEECC-CCcEEEEEe
Confidence            8764 555679999987421  111        111 11234689999999665543 3  379999996 677777775


Q ss_pred             CC--------CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          279 AE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       279 ~~--------~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+        .+++++|.|++..+++.+....  .++.-.||.+
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~g~l~~~  307 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE--MGGGSMLYTV  307 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEECGG--GTCCEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEcCCCC--cCCceeEEEE
Confidence            43        3567999999888877765222  2344445544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=4.1e-05  Score=67.21  Aligned_cols=109  Identities=6%  Similarity=-0.020  Sum_probs=69.7

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEE
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ  273 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~  273 (434)
                      ....++++|+|+.++  +......+..||.++.....+   .-.....|++.++|+++++- .+  .+.|..++......
T Consensus       141 ~p~~i~~~~~g~~~v--~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd-~~--~~~i~~~~~~~~~~  215 (260)
T d1rwia_         141 DPDGVAVDNSGNVYV--TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE-HN--TNQVVKLLAGSTTS  215 (260)
T ss_dssp             SCCEEEECTTCCEEE--EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE-TT--TTEEEEECTTCSCC
T ss_pred             CcceeeecCCCCEee--eccccccccccccccceeeeeeccccCCCccceeeeeeeeeeee-cC--CCEEEEEeCCCCeE
Confidence            346789999998655  345567899999876654444   23445779999999866544 33  36888887665422


Q ss_pred             EEE-eeC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecC
Q 013871          274 LGT-TRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       274 i~~-~~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g  316 (434)
                      ... ... ..+..++++++|..+++-..      ++.|+..+..+
T Consensus       216 ~~~~~~~~~~P~~i~~d~~g~l~vad~~------~~rI~~i~~~~  254 (260)
T d1rwia_         216 TVLPFTGLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSLE  254 (260)
T ss_dssp             EECCCCSCCCEEEEEECTTCCEEEEEGG------GTEEEEECCCG
T ss_pred             EEEccCCCCCeEEEEEeCCCCEEEEECC------CCEEEEEeCCC
Confidence            211 111 25667999999987666444      56555444433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.45  E-value=7e-05  Score=67.21  Aligned_cols=97  Identities=6%  Similarity=-0.028  Sum_probs=59.4

Q ss_pred             CeEEEEECcCCCEEEEEEccCCCeEEEEecccceeE----E-eCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          197 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----E-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       197 ~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~----~-~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ....+.+  ++..+.+. ....+.+..++.......    . .+......+++.++|++++....   ++.|..++....
T Consensus       166 ~~ngi~~--~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~---~~~V~~i~p~G~  239 (302)
T d2p4oa1         166 AANGLKR--FGNFLYVS-NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI---YNSVVRIAPDRS  239 (302)
T ss_dssp             SEEEEEE--ETTEEEEE-ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT---TCCEEEECTTCC
T ss_pred             ccccccc--cCCceeee-cCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC---CCcEEEECCCCC
Confidence            3345555  45556653 455678888887532111    1 12334467999999997665543   358999987644


Q ss_pred             E-EEEEeeC--CCceEEEE---CCCCCEEEEEEc
Q 013871          272 K-QLGTTRA--ECSVTSEW---SPDGRYFMTATT  299 (434)
Q Consensus       272 ~-~i~~~~~--~~~~~~~w---spdg~~l~tas~  299 (434)
                      . .+.....  ..++.++|   +||++.|..++.
T Consensus       240 ~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         240 TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             EEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            2 2333332  25678999   789998877664

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=0.0001  Score=66.76  Aligned_cols=180  Identities=10%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             ceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeee--cCCCCCeEEEEECcCCCEEEEEEccC---
Q 013871          143 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP--LRKEGPVHDVQWSYSGSEFAVVYGFM---  217 (434)
Q Consensus       143 ~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~--l~~~~~i~~v~wspdg~~~av~~g~~---  217 (434)
                      ....+.++++|+.+++ ...+....       ..+..++..+.....+.  .......+++++.|+|+.++  +...   
T Consensus        83 ~p~gla~~~dG~l~va-~~~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~v--td~~~~~  152 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVC-YLGDFKST-------GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF--TDFRGYS  152 (319)
T ss_dssp             SEEEEEECTTSCEEEE-ECTTSSSC-------CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE--EECCCBT
T ss_pred             CeeEEEECCCCCEEEE-ecCCCccc-------eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceee--ccccccc
Confidence            3457889999974432 21111111       12444443333222211  11234578999999998655  2211   


Q ss_pred             ---CCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccC-CE---EE-----EEeeCC-Cc
Q 013871          218 ---PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-GK---QL-----GTTRAE-CS  282 (434)
Q Consensus       218 ---~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~-~~---~i-----~~~~~~-~~  282 (434)
                         .+.+..++..+..+..+  .-..-|.|+|+|+|+.|.++...  .+.|+.||++. +.   ..     ...... ..
T Consensus       153 ~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~P  230 (319)
T d2dg1a1         153 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGP  230 (319)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEE
T ss_pred             ccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc--CCceEEEEEcCCCceeccccceeeeccCCccce
Confidence               12466666665544433  22345789999999988777643  36999999763 21   11     111111 23


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeeecc--------cceeeEEEcCCCCCC
Q 013871          283 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--------KLFQAEWKPVSPDKF  340 (434)
Q Consensus       283 ~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~~~--------~~~~~~w~p~~~~~~  340 (434)
                      -.+++.++|+..++...      .+.|.+++-+|+++.+...+        ...++++.|....++
T Consensus       231 dGl~vD~~G~l~Va~~~------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~  290 (319)
T d2dg1a1         231 DSCCIDSDDNLYVAMYG------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI  290 (319)
T ss_dssp             EEEEEBTTCCEEEEEET------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred             eeeeEcCCCCEEEEEcC------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEE
Confidence            34999999997777766      89999999999988776543        345777777654443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.29  E-value=0.00024  Score=63.48  Aligned_cols=213  Identities=8%  Similarity=-0.047  Sum_probs=119.3

Q ss_pred             eeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceee
Q 013871           93 VAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY  172 (434)
Q Consensus        93 v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~  172 (434)
                      +..++++|++. ++..-.     ..++  ||.+..   ................+.++++|+.+++.  ...+       
T Consensus        30 ~e~iAv~pdG~-l~vt~~-----~~~~--I~~i~p---~g~~~~~~~~~~~~~gla~~~dG~l~v~~--~~~~-------   89 (302)
T d2p4oa1          30 LENLASAPDGT-IFVTNH-----EVGE--IVSITP---DGNQQIHATVEGKVSGLAFTSNGDLVATG--WNAD-------   89 (302)
T ss_dssp             EEEEEECTTSC-EEEEET-----TTTE--EEEECT---TCCEEEEEECSSEEEEEEECTTSCEEEEE--ECTT-------
T ss_pred             cCCEEECCCCC-EEEEeC-----CCCE--EEEEeC---CCCEEEEEcCCCCcceEEEcCCCCeEEEe--cCCc-------
Confidence            66788999853 332211     1233  444432   22233333344566789999999844332  1111       


Q ss_pred             cceeEEEEee---CCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe-------------CC
Q 013871          173 GESKLNYLTT---DGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-------------GS  236 (434)
Q Consensus       173 g~~~l~~l~~---~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~-------------~~  236 (434)
                         .++.+..   .+.......+......+++++.++|+.++  +....+.+..+|........+             ..
T Consensus        90 ---~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (302)
T d2p4oa1          90 ---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT--ADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF  164 (302)
T ss_dssp             ---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEE--EETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred             ---eEEEEEecccccceeeccccCCccccceeEEccCCCEEe--eccccccceeeeccCCcceeEecCCccceeeccCcc
Confidence               1222222   22222233333456788999999997665  445566888888764432211             11


Q ss_pred             cCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEE---E-EeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEE
Q 013871          237 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL---G-TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF  312 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i---~-~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw  312 (434)
                      ...+.+.+  ++..+..+...+  +.|+.++.......   . .......-.+++++||+.+++...      ++.|..+
T Consensus       165 ~~~ngi~~--~~~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~------~~~V~~i  234 (302)
T d2p4oa1         165 PAANGLKR--FGNFLYVSNTEK--MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI------YNSVVRI  234 (302)
T ss_dssp             CSEEEEEE--ETTEEEEEETTT--TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT------TCCEEEE
T ss_pred             cccccccc--cCCceeeecCCC--CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC------CCcEEEE
Confidence            23355655  456666665443  78988887643211   1 112334445999999997777666      8999999


Q ss_pred             eecCceeeeeec----ccceeeEEE---cCCCCCC
Q 013871          313 HHNGSLFFKKMF----DKLFQAEWK---PVSPDKF  340 (434)
Q Consensus       313 ~~~g~~~~~~~~----~~~~~~~w~---p~~~~~~  340 (434)
                      +.+|+.......    .....++|.   |+...||
T Consensus       235 ~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         235 APDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            999985443322    245678884   4444444

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.02  E-value=0.0036  Score=54.81  Aligned_cols=150  Identities=13%  Similarity=0.137  Sum_probs=99.6

Q ss_pred             EEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe----CCcCeeEEEECCCCCeEE
Q 013871          177 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLC  252 (434)
Q Consensus       177 l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~----~~~~~~~i~~SP~g~~l~  252 (434)
                      +..++..+.....+..........++..++|..++.  ......+.+++..+..+..+    +......+++.++|++++
T Consensus        95 i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~--~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_          95 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVV--ECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEE--ETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             cccccccccceeecCCCcccccceeccccCCcEEEE--eeccceeeEeccCCceeecccccccccccceeeeccceeEEe
Confidence            334444443333333333456678999999976663  44456899999988877776    234567789999998776


Q ss_pred             EEecCCCCCeEEEEEccCCEEEEEeeCC----CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee----c
Q 013871          253 LAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM----F  324 (434)
Q Consensus       253 ~~~~~~~~g~i~iwd~~~~~~i~~~~~~----~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~----~  324 (434)
                      +..   ..+.|++||.. ++.+..+...    .+..++.+|+|+.+++-...     +..|.+|+-+|+++....    .
T Consensus       173 ~d~---~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-----~~~v~~f~~~G~~~~~~~~~~~~  243 (279)
T d1q7fa_         173 SDN---RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-----NFNLTIFTQDGQLISALESKVKH  243 (279)
T ss_dssp             EEG---GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-----SCEEEEECTTSCEEEEEEESSCC
T ss_pred             eec---cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCC-----CcEEEEECCCCCEEEEEeCCCCC
Confidence            655   33699999975 5566665332    45569999999976654441     335999999999765532    2


Q ss_pred             ccceeeEEEcCCC
Q 013871          325 DKLFQAEWKPVSP  337 (434)
Q Consensus       325 ~~~~~~~w~p~~~  337 (434)
                      .+.+.++..|++.
T Consensus       244 ~~p~~vav~~dG~  256 (279)
T d1q7fa_         244 AQCFDVALMDDGS  256 (279)
T ss_dssp             SCEEEEEEETTTE
T ss_pred             CCEeEEEEeCCCc
Confidence            3567788888764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.02  E-value=0.0056  Score=57.23  Aligned_cols=253  Identities=10%  Similarity=0.053  Sum_probs=126.2

Q ss_pred             ceEEecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEec-C------------
Q 013871            3 LLLTCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMA-T------------   69 (434)
Q Consensus         3 ~~l~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~-~------------   69 (434)
                      ..+++||||++|+......|.+.-.|++.|+.+|+.+......    .....+.|++|++.|.... +            
T Consensus       128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~----~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             cceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc----ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            3568999999999666555566678999999999876532221    1122689999999876542 1            


Q ss_pred             ----CeEEEEeCCCCCCceeeeee--cC--CeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCc---eeeee
Q 013871           70 ----NEIQFFDTTDFPKGILYRLR--VP--GVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQP---LARRS  138 (434)
Q Consensus        70 ----~~i~v~~~~~~~~~~~~~~~--~~--~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~---i~~~~  138 (434)
                          ..|..+.+.........-..  ..  .+..+..+++ +..+.+.+.........+.+.++.... ...   .....
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d-~~~l~i~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~  281 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD-GRYVLLSIREGCDPVNRLWYCDLQQES-NGITGILKWVK  281 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT-SCEEEEEEECSSSSCCEEEEEEGGGSS-SSSCSSCCCEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCC-cceeeEEeeccCCccEEEEEeeCCCcc-cccccccceeE
Confidence                26777777654322111111  11  2445667777 444444333222222234444443311 000   00011


Q ss_pred             ecc--cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcce---eeeecCCCCCeEEEEECcCCCEEEEE
Q 013871          139 FFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE---GLVPLRKEGPVHDVQWSYSGSEFAVV  213 (434)
Q Consensus       139 ~~~--~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~---~~v~l~~~~~i~~v~wspdg~~~av~  213 (434)
                      ...  ...... ....|..+++.+..  +...      ..|..+++.....   ..+-...+..+..-.++..+.++++.
T Consensus       282 ~~~~~~~~~~~-~~~~~~~~~~~Tn~--~a~~------~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~  352 (430)
T d1qfma1         282 LIDNFEGEYDY-VTNEGTVFTFKTNR--HSPN------YRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (430)
T ss_dssp             EECSSSSCEEE-EEEETTEEEEEECT--TCTT------CEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             eecccccceEE-EecCCceeecccCc--cccc------ceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE
Confidence            111  011111 11234444444321  1111      1244444322111   11111223445444444455666654


Q ss_pred             EccCCC--eEEEEecccceeEEe---CCcCeeEEEECCCCCeEEE--EecCCCCCeEEEEEccCCE
Q 013871          214 YGFMPA--SATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCL--AGFGNLPGDMAFWDYVDGK  272 (434)
Q Consensus       214 ~g~~~~--~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~--~~~~~~~g~i~iwd~~~~~  272 (434)
                      + ..++  +|.++++.++....+   ..+.+..+..+++...+.+  .++- ...+++-+|+.+++
T Consensus       353 ~-~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~-tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         353 Y-LHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL-SPGIIYHCDLTKEE  416 (430)
T ss_dssp             E-EETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS-CCCEEEEEETTSSS
T ss_pred             E-EcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCC-CCCeEEEEECCCCC
Confidence            3 2333  788999876655443   3444555555566654433  3332 46789999998773

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.97  E-value=0.00095  Score=59.93  Aligned_cols=178  Identities=17%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             eeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCC----CeEEEEECcCCCEEEEEEcc---
Q 013871          144 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG----PVHDVQWSYSGSEFAVVYGF---  216 (434)
Q Consensus       144 ~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~----~i~~v~wspdg~~~av~~g~---  216 (434)
                      -..+.+.++|..+.+. .    ..       ..+..++..+.....+....++    ..+++++.|+|+.++.-.+.   
T Consensus        73 P~Gl~~~~dg~~l~va-d----~~-------~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~  140 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVA-D----MR-------LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVA  140 (314)
T ss_dssp             EEEEEECSSSSEEEEE-E----TT-------TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCT
T ss_pred             ceeEEEeCCCCEEEEE-E----CC-------CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcc
Confidence            3468899999876552 1    11       1255566555432222222122    35789999999766521111   


Q ss_pred             ----------CCCeEEEEecccceeEEe-CCcCeeEEEECCCCC----eEEEEecCCCCCeEEEEEccC-CEE-----EE
Q 013871          217 ----------MPASATIFNKKCRPILEL-GSGPYNTVRWNPKGK----FLCLAGFGNLPGDMAFWDYVD-GKQ-----LG  275 (434)
Q Consensus       217 ----------~~~~v~l~d~~~~~~~~~-~~~~~~~i~~SP~g~----~l~~~~~~~~~g~i~iwd~~~-~~~-----i~  275 (434)
                                ..+.+..++..+...... +-..-|.++|+|++.    .|.++...  .+.|+.||+.. +..     ..
T Consensus       141 ~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~--~~~i~~~d~~~~g~~~~~~~~~  218 (314)
T d1pjxa_         141 PADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             TSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCCCCcceeEEEEEeec--ccceEEeeccCccccceeeEEE
Confidence                      123566666555433222 222347899999875    56666543  37899998763 322     22


Q ss_pred             EeeCC---CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc-eeeeee--cccceeeEEEcCCCCCCC
Q 013871          276 TTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKKM--FDKLFQAEWKPVSPDKFG  341 (434)
Q Consensus       276 ~~~~~---~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~-~~~~~~--~~~~~~~~w~p~~~~~~~  341 (434)
                      .+...   ..-.+++..+|+.+++...      .+.|.+|+-+|. ++....  .....+++|.|+...||-
T Consensus       219 ~~~~~~~~~pdGiavD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         219 HIPGTHEGGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             ECCCCSSCEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EccccccccceeeEEecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEE
Confidence            22222   2224899999998777666      788999998754 444333  345778999987765654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.70  E-value=0.0061  Score=52.62  Aligned_cols=132  Identities=7%  Similarity=-0.021  Sum_probs=84.2

Q ss_pred             CCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC
Q 013871          195 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG  271 (434)
Q Consensus       195 ~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~  271 (434)
                      ....+++++.++|+.++  .......+..++..+.....+   .......|+++|+|+++++..   ..+.|..+|.+..
T Consensus        97 ~~~p~~iavd~~g~i~v--~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~---~~~~i~~~d~~~~  171 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYV--ADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAESN  171 (260)
T ss_dssp             CCSEEEEEECTTCCEEE--EEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEG---GGTEEEEECTTTC
T ss_pred             eeecccccccccceeEe--eccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecc---ccccccccccccc
Confidence            34568999999998665  344455788887765443333   223446899999999766554   3358999998755


Q ss_pred             EEEEEe-eC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCceeeeee---cccceeeEEEcCCC
Q 013871          272 KQLGTT-RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM---FDKLFQAEWKPVSP  337 (434)
Q Consensus       272 ~~i~~~-~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~~~~~~~---~~~~~~~~w~p~~~  337 (434)
                      ...... .. ..+..++++++|+.+++-..      .+.|..++.++.......   ...-..+++.+++.
T Consensus       172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred             eeeeeeccccCCCccceeeeeeeeeeeecC------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence            333222 22 24566999999987766655      667777777666433322   23345666776653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.57  E-value=0.0038  Score=55.23  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=95.6

Q ss_pred             EEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 013871          146 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN  225 (434)
Q Consensus       146 ~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d  225 (434)
                      ...|.+....|..     +|..+.      .|+.++..+.......+  ...+..+++.++|+.++.   .. ..+.++|
T Consensus        22 gp~wd~~~~~l~w-----vDi~~~------~I~r~d~~~g~~~~~~~--~~~~~~i~~~~dg~l~va---~~-~gl~~~d   84 (295)
T d2ghsa1          22 GPTFDPASGTAWW-----FNILER------ELHELHLASGRKTVHAL--PFMGSALAKISDSKQLIA---SD-DGLFLRD   84 (295)
T ss_dssp             EEEEETTTTEEEE-----EEGGGT------EEEEEETTTTEEEEEEC--SSCEEEEEEEETTEEEEE---ET-TEEEEEE
T ss_pred             CCeEECCCCEEEE-----EECCCC------EEEEEECCCCeEEEEEC--CCCcEEEEEecCCCEEEE---Ee-CccEEee
Confidence            3568877666654     232222      47777776664444444  457889999998866552   22 3788999


Q ss_pred             cccceeEEe-------CCcCeeEEEECCCCCeEEEEecC-CCCCeEEEEEccCCEEEEEeeCC-CceEEEECCCCCEEEE
Q 013871          226 KKCRPILEL-------GSGPYNTVRWNPKGKFLCLAGFG-NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMT  296 (434)
Q Consensus       226 ~~~~~~~~~-------~~~~~~~i~~SP~g~~l~~~~~~-~~~g~i~iwd~~~~~~i~~~~~~-~~~~~~wspdg~~l~t  296 (434)
                      .....+..+       .....|.+...|+|++.+..... ...+.-.+|...+++........ ....+.|+||++.+..
T Consensus        85 ~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          85 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEE
Confidence            876554433       12346889999999976654322 12345667777777655444433 3445999999998888


Q ss_pred             EEcCCceeeCCcEEEEeecC
Q 013871          297 ATTAPRLQIDNGIKIFHHNG  316 (434)
Q Consensus       297 as~~prl~~D~~i~iw~~~g  316 (434)
                      +.+.     .+.|..++++.
T Consensus       165 ~dt~-----~~~I~~~~~d~  179 (295)
T d2ghsa1         165 VDTK-----VNRLMRVPLDA  179 (295)
T ss_dssp             EETT-----TCEEEEEEBCT
T ss_pred             eecc-----cceeeEeeecc
Confidence            7764     56777777643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.50  E-value=0.035  Score=50.74  Aligned_cols=294  Identities=10%  Similarity=0.093  Sum_probs=160.0

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcC-CC--------------------------------CC-----
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMT-KT--------------------------------TW-----   52 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~-~~--------------------------------~~-----   52 (434)
                      ..|.+.|+   +...+.|+|+-+-+++.+..+.--... ..                                .|     
T Consensus        11 Deyy~f~S---gG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HH   87 (459)
T d1fwxa2          11 DDYYGFWS---SGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHH   87 (459)
T ss_dssp             CSEEEEEC---CBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCC
T ss_pred             ccEEEEee---CCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCC
Confidence            35666666   345688999999999888776532110 00                                01     


Q ss_pred             CeeeecC---CCcEEEEec--CCeEEEEeCCCCCCceeeeee-cCCeeEEEEeCCCCC-eEEEEecCC------------
Q 013871           53 PSIRFSS---DEAVACRMA--TNEIQFFDTTDFPKGILYRLR-VPGVAAFEVSKAPGS-HVAVFVPES------------  113 (434)
Q Consensus        53 ~~~~~S~---d~~~la~~~--~~~i~v~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~-~ia~~~~~~------------  113 (434)
                      +.+.++.   ||+||....  ++.|-+.|+..+.......+. .+++..+...++++. +++.-....            
T Consensus        88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            2344544   899988774  469999999887643333332 235566666555332 333221111            


Q ss_pred             -CCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEeccc--------ccCceee------------
Q 013871          114 -KGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD--------KTNQSYY------------  172 (434)
Q Consensus       114 -~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d--------~~~~~~~------------  172 (434)
                       ....+.+...+..+   .+...+.... .+...+.++++|+++.+.+-....        ....-|-            
T Consensus       168 ~~~y~~~~t~ID~~t---m~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av  243 (459)
T d1fwxa2         168 VANYVNVFTAVDADK---WEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  243 (459)
T ss_dssp             GG-EEEEEEEEETTT---TEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             hhhcceEEEEEecCC---ceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhh
Confidence             01113455666655   4444444433 344577889999987654311100        0000000            


Q ss_pred             --c----ceeEEEEeeCC----cceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccc------------e
Q 013871          173 --G----ESKLNYLTTDG----THEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------------P  230 (434)
Q Consensus       173 --g----~~~l~~l~~~~----~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~------------~  230 (434)
                        |    ...+-.++...    .....++..  ...|.+..+|||+++++ +|..+..+.++|++.-            .
T Consensus       244 ~~Gk~~eingV~VVD~~~~~~~~v~~yIPVp--KsPHGV~vSPDGKyi~V-aGKLs~tVSViD~~Ki~~~~~~~~~~~~~  320 (459)
T d1fwxa2         244 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKKHLCV-AGKLSPTVTVLDVTRFDAVFYENADPRSA  320 (459)
T ss_dssp             HHTCSEEETTEEEEECSGG--CSSEEEEEEE--SSCCCEEECTTSSEEEE-ECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred             hcCCcEEeCCceeecccccCCcceeEEEecC--CCCCceEECCCCCEEEE-eCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence              0    00112222211    111123332  34578999999999988 5888889999998510            0


Q ss_pred             e-E--EeCCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC----------EEEEEeeCC-CceEE------EECCC
Q 013871          231 I-L--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----------KQLGTTRAE-CSVTS------EWSPD  290 (434)
Q Consensus       231 ~-~--~~~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~----------~~i~~~~~~-~~~~~------~wspd  290 (434)
                      + .  +++-++. .-+|...|. ..+.-|  .+.+|.-|++...          ..+..+.-| .+-++      .-.||
T Consensus       321 ~~~e~elglgPL-ht~fd~~g~-aytslf--ids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~d  396 (459)
T d1fwxa2         321 VVAEPELGLGPL-HTAFDGRGN-AYTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT  396 (459)
T ss_dssp             EEECCBCCSCEE-EEEECTTSE-EEEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred             EEeecccCcCcc-ccccCCCce-EEEEee--ccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCC
Confidence            1 1  1233443 346777774 333333  5679999998532          445555444 22222      35899


Q ss_pred             CCEEEEEEcCCcee---e----CCcEEEEeecCce
Q 013871          291 GRYFMTATTAPRLQ---I----DNGIKIFHHNGSL  318 (434)
Q Consensus       291 g~~l~tas~~prl~---~----D~~i~iw~~~g~~  318 (434)
                      |++|++......-|   |    -..-+|.|++|..
T Consensus       397 gk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~  431 (459)
T d1fwxa2         397 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  431 (459)
T ss_dssp             SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCEEEEecccccccccCCCCCCCccceEEEcCCCe
Confidence            99999988543311   1    1236788888864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.25  E-value=0.053  Score=47.44  Aligned_cols=220  Identities=11%  Similarity=0.027  Sum_probs=124.2

Q ss_pred             EecCCCcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCcee
Q 013871            6 TCLRVGLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGIL   85 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~   85 (434)
                      .|++....|....-    ..+.|..||..+++. ..+...    ....++.+.+||.+++.. .+.|.++|..+......
T Consensus        24 ~wd~~~~~l~wvDi----~~~~I~r~d~~~g~~-~~~~~~----~~~~~i~~~~dg~l~va~-~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          24 TFDPASGTAWWFNI----LERELHELHLASGRK-TVHALP----FMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEETTTTEEEEEEG----GGTEEEEEETTTTEE-EEEECS----SCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEE
T ss_pred             eEECCCCEEEEEEC----CCCEEEEEECCCCeE-EEEECC----CCcEEEEEecCCCEEEEE-eCccEEeecccceeeEE
Confidence            46665555543221    246788899888864 334332    233478888999888765 46799999876432111


Q ss_pred             eeee----cCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEE
Q 013871           86 YRLR----VPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQ  161 (434)
Q Consensus        86 ~~~~----~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~  161 (434)
                      ....    ...+.++.+.|++.-.+.....  ....+.-.+|.+..   ++........ .....+.|+++++.+++.- 
T Consensus        94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~--~~~~~~g~l~~~~~---g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~d-  166 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHPSGALWIGTMGR--KAETGAGSIYHVAK---GKVTKLFADI-SIPNSICFSPDGTTGYFVD-  166 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEET--TCCTTCEEEEEEET---TEEEEEEEEE-SSEEEEEECTTSCEEEEEE-
T ss_pred             eeeecCCCcccceeeEECCCCCEEEEeccc--cccccceeEeeecC---CcEEEEeecc-CCcceeeecCCCceEEEee-
Confidence            1111    1136778888885433333222  22233445666654   3322222222 2335789999999876642 


Q ss_pred             ecccccCceeecceeEEEEeeCCc-------ceeeeecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEE
Q 013871          162 SDVDKTNQSYYGESKLNYLTTDGT-------HEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE  233 (434)
Q Consensus       162 ~~~d~~~~~~~g~~~l~~l~~~~~-------~~~~v~l~-~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~  233 (434)
                      +   ...       .|+.++.+..       ....+... ..+....++...+|+..+.  ....+.|..||-+++.+..
T Consensus       167 t---~~~-------~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva--~~~~g~V~~~dp~G~~~~~  234 (295)
T d2ghsa1         167 T---KVN-------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDTDGNHIAR  234 (295)
T ss_dssp             T---TTC-------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECTTCCEEEE
T ss_pred             c---ccc-------eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee--eeCCCceEEecCCCcEeeE
Confidence            1   111       2343333211       11112221 2455678899999986663  4445799999998887776


Q ss_pred             e--CCcCeeEEEEC-CCCCeEEEE
Q 013871          234 L--GSGPYNTVRWN-PKGKFLCLA  254 (434)
Q Consensus       234 ~--~~~~~~~i~~S-P~g~~l~~~  254 (434)
                      +  .....++++|- ||++.|.+.
T Consensus       235 i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         235 YEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ecCCCCceEEEEEeCCCCCEEEEE
Confidence            5  44567888884 777755543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.13  E-value=0.1  Score=48.27  Aligned_cols=248  Identities=14%  Similarity=0.043  Sum_probs=123.6

Q ss_pred             eeeecCCCcEEEEecC--C----eEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecC----------CCCCC
Q 013871           54 SIRFSSDEAVACRMAT--N----EIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPE----------SKGSP  117 (434)
Q Consensus        54 ~~~~S~d~~~la~~~~--~----~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~----------~~~~~  117 (434)
                      .+.+|||+++||.+.+  |    +|+++|+.+... ....+.......+.|++++..++-+....          ....+
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~-~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE-LPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE-EEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCccee-cccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            4578999999998732  2    899999988542 11222222235789999843332222221          12345


Q ss_pred             ceEEEEEcCCCCCCCceeeeeecc--cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCccee------e
Q 013871          118 ASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG------L  189 (434)
Q Consensus       118 ~~v~i~~~~~~~~~~~i~~~~~~~--~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~------~  189 (434)
                      ..|..+.+.+.. ...+.......  ...+.+..+.+|+++++......+..       ..++.++.......      .
T Consensus       208 ~~v~~h~lgt~~-~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         208 QKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPV-------NRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSC-------CEEEEEEGGGSSSSSCSSCCC
T ss_pred             ceEEEEECCCCc-cccccccccccCCceEEeeeccCCcceeeEEeeccCCcc-------EEEEEeeCCCcccccccccce
Confidence            578888876521 11122222111  12345677999999877654322222       23555554322111      1


Q ss_pred             eecC--CCCCeEEEEECcCCCEEEEEEccC--CCeEEEEeccc---ceeEEe---CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          190 VPLR--KEGPVHDVQWSYSGSEFAVVYGFM--PASATIFNKKC---RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       190 v~l~--~~~~i~~v~wspdg~~~av~~g~~--~~~v~l~d~~~---~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      +++.  ....+.-+.  .+|..|.+.+...  .+++...++..   .....+   +...+..-.++..+.+|++.-..+.
T Consensus       280 ~~~~~~~~~~~~~~~--~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~  357 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT--NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV  357 (430)
T ss_dssp             EEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT
T ss_pred             eEeecccccceEEEe--cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCC
Confidence            1111  122222222  2455566555432  23666666542   111122   2333444445556677777765555


Q ss_pred             CCeEEEEEccCCEEEEEeeCC--CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee
Q 013871          260 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH  314 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~~--~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~  314 (434)
                      .+.|.+++..+++........  .+..+..+++...+....+++.  .-.++.-+|+
T Consensus       358 ~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~--tP~~~y~~Dl  412 (430)
T d1qfma1         358 KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL--SPGIIYHCDL  412 (430)
T ss_dssp             EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSS--CCCEEEEEET
T ss_pred             EeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCC--CCCeEEEEEC
Confidence            678999999887654443322  2222444555554443333111  1345555555

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.07  E-value=0.038  Score=50.50  Aligned_cols=134  Identities=9%  Similarity=0.092  Sum_probs=77.8

Q ss_pred             EEEEeeCCcc-eeeeecCCCCCeEEEEECcCCCEEEEEEccCC------------------CeEEEEecccceeE-Ee-C
Q 013871          177 LNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP------------------ASATIFNKKCRPIL-EL-G  235 (434)
Q Consensus       177 l~~l~~~~~~-~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~------------------~~v~l~d~~~~~~~-~~-~  235 (434)
                      +-.+++.... ..++.+.....+|.+...++++.-.|+.+...                  +.+..+|.....+. +. -
T Consensus       112 VAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V  191 (459)
T d1fwxa2         112 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV  191 (459)
T ss_dssp             EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee
Confidence            4455554432 23445555667788888776654444333321                  23566787654432 22 2


Q ss_pred             CcCeeEEEECCCCCeEEEEecCCCCC------------eEEEEEc-----------------------cCC---EEEEEe
Q 013871          236 SGPYNTVRWNPKGKFLCLAGFGNLPG------------DMAFWDY-----------------------VDG---KQLGTT  277 (434)
Q Consensus       236 ~~~~~~i~~SP~g~~l~~~~~~~~~g------------~i~iwd~-----------------------~~~---~~i~~~  277 (434)
                      .+....+.++|+|+++++.++....+            .+.++|.                       .+.   ..+..+
T Consensus       192 ~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yI  271 (459)
T d1fwxa2         192 SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYI  271 (459)
T ss_dssp             SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEE
T ss_pred             CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEE
Confidence            33456799999999999877543211            2333333                       211   111111


Q ss_pred             eC-CCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeec
Q 013871          278 RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN  315 (434)
Q Consensus       278 ~~-~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~  315 (434)
                      .. ..+-.+..||||+|+++++.-     ++++-|.|++
T Consensus       272 PVpKsPHGV~vSPDGKyi~VaGKL-----s~tVSViD~~  305 (459)
T d1fwxa2         272 PIANNPHGCNMAPDKKHLCVAGKL-----SPTVTVLDVT  305 (459)
T ss_dssp             EEESSCCCEEECTTSSEEEEECTT-----SSBEEEEEGG
T ss_pred             ecCCCCCceEECCCCCEEEEeCCc-----CCcEEEEEeh
Confidence            11 123348999999999999874     9999999984

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.62  E-value=0.59  Score=40.26  Aligned_cols=221  Identities=10%  Similarity=0.143  Sum_probs=134.7

Q ss_pred             CeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEE
Q 013871           70 NEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNW  149 (434)
Q Consensus        70 ~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~w  149 (434)
                      ++|.|.|+.+.....  +-.. ...+.-++|. .+.||+-.      ...+++|++.+   .+.+....+. .+++-.+|
T Consensus        45 ~~VvIidl~n~~~~~--Rrpi-~AdsAIMhP~-~~IiALra------g~~LQiFnlet---K~klks~~~~-e~VvfWkW  110 (327)
T d1utca2          45 AQVVIIDMNDPSNPI--RRPI-SADSAIMNPA-SKVIALKA------GKTLQIFNIEM---KSKMKAHTMT-DDVTFWKW  110 (327)
T ss_dssp             EEEEEEETTSTTSCE--EEEC-CCSEEEECSS-SSEEEEEE------TTEEEEEETTT---TEEEEEEECS-SCCCEEEE
T ss_pred             ceEEEEECCCCCcce--eccc-chhhhhcCCC-CcEEEEec------CCeEEEEehhH---hhhhceEEcC-CCcEEEEe
Confidence            499999998765422  2222 2345567887 67777643      34799999988   6777666554 37777888


Q ss_pred             CCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecC-----CCCCeEEEEECcCCCEEEEEE--c---cCCC
Q 013871          150 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-----KEGPVHDVQWSYSGSEFAVVY--G---FMPA  219 (434)
Q Consensus       150 s~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~-----~~~~i~~v~wspdg~~~av~~--g---~~~~  219 (434)
                      -.+.+ |.+.+             ++.+|.+++.+.......++     ....|-...-+++.++++++.  .   ...|
T Consensus       111 is~~~-L~lVT-------------~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G  176 (327)
T d1utca2         111 ISLNT-VALVT-------------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG  176 (327)
T ss_dssp             SSSSE-EEEEC-------------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred             cCCCE-EEEEc-------------CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence            76543 44432             22356666655432222222     146778889999999998852  1   1234


Q ss_pred             eEEEEecccceeEEeCCcCeeEEEECCCC-----CeEEEEecCCCCCeEEEEEccCC--------EEEEEee------CC
Q 013871          220 SATIFNKKCRPILELGSGPYNTVRWNPKG-----KFLCLAGFGNLPGDMAFWDYVDG--------KQLGTTR------AE  280 (434)
Q Consensus       220 ~v~l~d~~~~~~~~~~~~~~~~i~~SP~g-----~~l~~~~~~~~~g~i~iwd~~~~--------~~i~~~~------~~  280 (434)
                      .+.||..+.+...-++.....-..+--+|     .+++.+..+...+++.|.++...        +....+.      ..
T Consensus       177 ~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~D  256 (327)
T d1utca2         177 AMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  256 (327)
T ss_dssp             EEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTC
T ss_pred             EEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCC
Confidence            78899886554444422222222332222     25666655434478999887641        1211111      11


Q ss_pred             CceEEEECCCCCEEEEEEcCCceeeCCcEEEEee-cCceeeeeec
Q 013871          281 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF  324 (434)
Q Consensus       281 ~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~-~g~~~~~~~~  324 (434)
                      -++.+..|+--..+..-+.      -|-+.++|+ +|.+++....
T Consensus       257 FPvamqvs~kygiiyviTK------~G~i~lyDleTgt~i~~nRI  295 (327)
T d1utca2         257 FPVAMQISEKHDVVFLITK------YGYIHLYDLETGTCIYMNRI  295 (327)
T ss_dssp             CEEEEEEETTTTEEEEEET------TSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeeccCCEEEEEec------CcEEEEEEcccccEEEEeec
Confidence            3456888888888888888      899999999 6778776544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.75  Score=38.98  Aligned_cols=225  Identities=8%  Similarity=-0.085  Sum_probs=118.1

Q ss_pred             EEEEecCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeec-c
Q 013871           63 VACRMATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFF-R  141 (434)
Q Consensus        63 ~la~~~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~-~  141 (434)
                      ||.+...++|+.+++..... ....-....+..+.+.+. ...+ +|.....   ..|.-.++............... .
T Consensus         3 fLl~s~~~~I~~~~l~~~~~-~~~~~~~~~~~~id~d~~-~~~l-Yw~D~~~---~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEY-TSLIPNLRNVVALDTEVA-SNRI-YWSDLSQ---RMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCC-EEEECSCSSEEEEEEETT-TTEE-EEEETTT---TEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCCcc-eeeeCCCCceEEEEEEeC-CCEE-EEEECCC---CEEEEEEecCCCCCcceEEEEeCCC
Confidence            56666667888888876432 111112345677788776 3333 5543322   34444444321001111111111 1


Q ss_pred             cceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 013871          142 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA  221 (434)
Q Consensus       142 ~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v  221 (434)
                      .....++....+..|.+. ..          +...++..+..|.....+..........++..|....+.+......+.|
T Consensus        77 ~~p~glAvD~~~~~lY~~-d~----------~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWT-DS----------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             SCCCEEEEETTTTEEEEE-ET----------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCcceEEEeeccceEEEE-ec----------CCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcce
Confidence            122244554455555442 11          1123566666665433333333456788999987666666444445678


Q ss_pred             EEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCC--EEEEEeeCC--CceEEEECCCCCEE
Q 013871          222 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDGRYF  294 (434)
Q Consensus       222 ~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~--~~i~~~~~~--~~~~~~wspdg~~l  294 (434)
                      ...++.+.....+   .-...+.|++.+.++.|..+...  .+.|+..|++..  +.+......  .+..++..  +.+|
T Consensus       146 ~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~l  221 (266)
T d1ijqa1         146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKV  221 (266)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEE
T ss_pred             eEeccCCCceecccccccceeeEEEeeccccEEEEecCC--cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEE
Confidence            8888876544443   23455889999999988888654  378999998654  333322221  33345544  5566


Q ss_pred             EEEEcCCceeeCCcEEEEe
Q 013871          295 MTATTAPRLQIDNGIKIFH  313 (434)
Q Consensus       295 ~tas~~prl~~D~~i~iw~  313 (434)
                      ..+...     ++.|...+
T Consensus       222 y~td~~-----~~~I~~~~  235 (266)
T d1ijqa1         222 FWTDII-----NEAIFSAN  235 (266)
T ss_dssp             EEEETT-----TTEEEEEE
T ss_pred             EEEECC-----CCeEEEEE
Confidence            666542     56665554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.52  E-value=1.1  Score=37.70  Aligned_cols=203  Identities=11%  Similarity=0.044  Sum_probs=113.7

Q ss_pred             eeeecCCCcEEEEe--cCCeEEEEeCCCCCCceeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCC
Q 013871           54 SIRFSSDEAVACRM--ATNEIQFFDTTDFPKGILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQS  131 (434)
Q Consensus        54 ~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~  131 (434)
                      .++|...++.+.-.  ..+.|...+++..............+..+++..-++ .+ +|..   .....|.+.++..   .
T Consensus        40 ~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~l-Y~~d---~~~~~I~~~~~dg---~  111 (263)
T d1npea_          40 GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TI-FWTD---SQLDRIEVAKMDG---T  111 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EE-EEEE---TTTTEEEEEETTS---C
T ss_pred             EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCC-eE-EEec---cCCCEEEEEecCC---c
Confidence            57777666655544  346888888765433222222234567777765422 22 3332   2345777777754   2


Q ss_pred             CceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEE
Q 013871          132 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFA  211 (434)
Q Consensus       132 ~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~a  211 (434)
                      .........-.....+...|.+..|.... ...        +...|+....+|.....+....-.....+++.+.++.+.
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~-~~~--------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTD-WNR--------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEE-CCS--------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEee-cCC--------CCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEE
Confidence            21111111112345666777766654421 110        111367777766543333323334557899998888887


Q ss_pred             EEEccCCCeEEEEecccceeEEe--CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEee
Q 013871          212 VVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR  278 (434)
Q Consensus       212 v~~g~~~~~v~l~d~~~~~~~~~--~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~  278 (434)
                      ++ ....++|...|+.+.....+  ....-..|++  ++.+|.....++  +.|...|..+++.+..+.
T Consensus       183 w~-d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         183 WV-DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKT--NSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             EE-ETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTT--TEEEEEETTTTEEEEEEC
T ss_pred             EE-eCCCCEEEEEECCCCCeEEEECCCCCcEEEEE--ECCEEEEEECCC--CEEEEEECCCCccceEEC
Confidence            74 44557899999976554433  1122235555  366777776543  689999998888776653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.40  E-value=1.3  Score=37.97  Aligned_cols=266  Identities=15%  Similarity=0.140  Sum_probs=143.9

Q ss_pred             CcEEEEEecCCCCCCCcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEecCCeEEEEeCCCCCCceeeeeec
Q 013871           11 GLIIQTFQKSSTPQEKNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRMATNEIQFFDTTDFPKGILYRLRV   90 (434)
Q Consensus        11 g~~L~t~~~~~~~~d~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~~~~~i~v~~~~~~~~~~~~~~~~   90 (434)
                      .+|++.-+..  ....+|.|-|+.++..+.+..-..   +   +.--.|..+.+|.-.+..|+|||++...+.....+ .
T Consensus        32 DkyicVRe~~--~~~~~VvIidl~n~~~~~Rrpi~A---d---sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~  102 (327)
T d1utca2          32 DKFICIREKV--GEQAQVVIIDMNDPSNPIRRPISA---D---SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-T  102 (327)
T ss_dssp             SSEEEEEEEE--TTEEEEEEEETTSTTSCEEEECCC---S---EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-S
T ss_pred             CCEEEEEecc--CCCceEEEEECCCCCcceecccch---h---hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-C
Confidence            5677665521  123578899998765433322221   1   33456888988877778999999988554322222 3


Q ss_pred             CCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeee----cccceeEEEECCCCCeEEEEEEecccc
Q 013871           91 PGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSF----FRCSTVQLNWNRGSTGLLAVAQSDVDK  166 (434)
Q Consensus        91 ~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~----~~~~~~~~~ws~~G~~l~~~~~~~~d~  166 (434)
                      +.|..-.|-.+  ..+++...      ..|.=|++...  ..+......    ....+....-++++++++++.-...+.
T Consensus       103 e~VvfWkWis~--~~L~lVT~------taVYHW~~~g~--s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  172 (327)
T d1utca2         103 DDVTFWKWISL--NTVALVTD------NAVYHWSMEGE--SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  172 (327)
T ss_dssp             SCCCEEEESSS--SEEEEECS------SEEEEEESSSS--CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETT
T ss_pred             CCcEEEEecCC--CEEEEEcC------CceEEEcccCC--CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCC
Confidence            45666677653  45555433      25677777542  233332221    235567778899999988765443332


Q ss_pred             cCceeecceeEEEEeeCCcceeeeecCCCCCeEEEE-ECcCC-----CEEEEEEc-cCCCeEEEEeccc----ce-----
Q 013871          167 TNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQ-WSYSG-----SEFAVVYG-FMPASATIFNKKC----RP-----  230 (434)
Q Consensus       167 ~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~-wspdg-----~~~av~~g-~~~~~v~l~d~~~----~~-----  230 (434)
                      .   ..|.-.||..  .......  +  +|..-+++ +.-+|     ..|++... ...+++.+.++..    .+     
T Consensus       173 ~---i~G~mQLYS~--er~~sQ~--i--eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk  243 (327)
T d1utca2         173 R---VVGAMQLYSV--DRKVSQP--I--EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK  243 (327)
T ss_dssp             E---EEEEEEEEET--TTTEEEE--E--CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCE
T ss_pred             c---eeEEEEEEEe--ccCcCcc--c--cceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcce
Confidence            2   3365556544  2322221  2  23222221 21121     23443322 2224888887632    11     


Q ss_pred             eEEe--C----CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCcee
Q 013871          231 ILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQ  304 (434)
Q Consensus       231 ~~~~--~----~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~  304 (434)
                      ..++  .    .+.--.+..|+.-..+.+-.   ..|.|++||++++.++..-+        .|+|.-++.+....    
T Consensus       244 ~vdi~fppea~~DFPvamqvs~kygiiyviT---K~G~i~lyDleTgt~i~~nR--------Is~~~iF~~a~~~~----  308 (327)
T d1utca2         244 AVDVFFPPEAQNDFPVAMQISEKHDVVFLIT---KYGYIHLYDLETGTCIYMNR--------ISGETIFVTAPHEA----  308 (327)
T ss_dssp             EEECCCCTTCTTCCEEEEEEETTTTEEEEEE---TTSEEEEEETTTCCEEEEEE--------CCSSCEEEEEEETT----
T ss_pred             eEEEECCccccCCcEEEEEeeccCCEEEEEe---cCcEEEEEEcccccEEEEee--------cCCCceEEeccCCC----
Confidence            1122  1    22224577777777777766   56799999999998876543        34443333333221    


Q ss_pred             eCCcEEEEeecCceee
Q 013871          305 IDNGIKIFHHNGSLFF  320 (434)
Q Consensus       305 ~D~~i~iw~~~g~~~~  320 (434)
                       .++|..-+-.|+.+.
T Consensus       309 -~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         309 -TAGIIGVNRKGQVLS  323 (327)
T ss_dssp             -TTEEEEEETTSEEEE
T ss_pred             -CceEEEECCCCeEEE
Confidence             345555555665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.21  E-value=1.2  Score=39.39  Aligned_cols=119  Identities=9%  Similarity=0.073  Sum_probs=72.6

Q ss_pred             CCeEEEEECcCCCEEEEEEccCCC----------eEEEEecccceeE---Ee---CCcCeeEEEECCCCCeEEEEecCCC
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFMPA----------SATIFNKKCRPIL---EL---GSGPYNTVRWNPKGKFLCLAGFGNL  259 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~~~----------~v~l~d~~~~~~~---~~---~~~~~~~i~~SP~g~~l~~~~~~~~  259 (434)
                      .+++..+...+|+.+++ .|..+.          .+.+||.+.+...   ..   +........+.++|++++.|+.+. 
T Consensus        20 ~~~~~a~~~~~gkv~v~-GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~-   97 (387)
T d1k3ia3          20 VPAAAAIEPTSGRVLMW-SSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-   97 (387)
T ss_dssp             CCSEEEEETTTTEEEEE-EECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-
T ss_pred             cccEEEEEeeCCEEEEE-EeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC-
Confidence            35555555566655554 443211          3678998754322   11   222334578899999999887653 


Q ss_pred             CCeEEEEEccCCEEEEEeeC--C-CceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          260 PGDMAFWDYVDGKQLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       260 ~g~i~iwd~~~~~~i~~~~~--~-~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                       ..+++||..+..-...-..  . .--.++..+||+.++.++.......-+.+.+||....
T Consensus        98 -~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          98 -KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             -TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             -cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence             5899999988754332221  1 2224677889999999886433333456888887543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.78  E-value=2.9  Score=36.62  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             CCeEEEEECcCCCEEEEEEccC-----------------CCeEEEEecccceeEEeCCcCeeEEEECCCCCeEEEEecCC
Q 013871          196 GPVHDVQWSYSGSEFAVVYGFM-----------------PASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN  258 (434)
Q Consensus       196 ~~i~~v~wspdg~~~av~~g~~-----------------~~~v~l~d~~~~~~~~~~~~~~~~i~~SP~g~~l~~~~~~~  258 (434)
                      ...++++...+|..++  +...                 -+.+..||.+...+..-+-..-|-|++|||+++|+++... 
T Consensus       150 ~~pNDv~~~~~g~fy~--Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~-  226 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYA--TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL-  226 (340)
T ss_dssp             SSEEEEEEEETTEEEE--EESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG-
T ss_pred             cCccceEEecCCCEEE--ecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC-
Confidence            3457777777775444  2110                 1134445544322221123456899999999999888754 


Q ss_pred             CCCeEEEEEccCC---EEEEEeeCCCceE-EEECCCCCEEEEEEc
Q 013871          259 LPGDMAFWDYVDG---KQLGTTRAECSVT-SEWSPDGRYFMTATT  299 (434)
Q Consensus       259 ~~g~i~iwd~~~~---~~i~~~~~~~~~~-~~wspdg~~l~tas~  299 (434)
                       .+.|.+|++...   +......-+...+ +.+.+++..+.++..
T Consensus       227 -~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         227 -AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             -GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             -CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence             378999998743   2333333333333 888875444455544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=2.6  Score=35.37  Aligned_cols=222  Identities=5%  Similarity=-0.111  Sum_probs=112.2

Q ss_pred             CcEEEEEcCCCcEEEEEeecCcCCCCCCeeeecCCCcEEEEe--cCCeEEEEeCCCCCCc-eeeeee---cCCeeEEEEe
Q 013871           26 KNVILWKTETGEAVYQLFQKNMTKTTWPSIRFSSDEAVACRM--ATNEIQFFDTTDFPKG-ILYRLR---VPGVAAFEVS   99 (434)
Q Consensus        26 ~~v~iWd~~~g~~~~~~~~~~~~~~~~~~~~~S~d~~~la~~--~~~~i~v~~~~~~~~~-~~~~~~---~~~v~~~~~s   99 (434)
                      ..|+..++.+.+. ..+....   .....+.|.+.++.+.-.  ..+.|...+++..... ....+.   ...+..+++.
T Consensus        10 ~~I~~~~l~~~~~-~~~~~~~---~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD   85 (266)
T d1ijqa1          10 HEVRKMTLDRSEY-TSLIPNL---RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD   85 (266)
T ss_dssp             SSEEEEETTSCCC-EEEECSC---SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred             CeEEEEECCCCcc-eeeeCCC---CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEe
Confidence            4588888876543 2222211   333378888877777665  3456776665432211 111111   2345567776


Q ss_pred             CCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCceeeeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEE
Q 013871          100 KAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY  179 (434)
Q Consensus       100 p~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~  179 (434)
                      +.++. | +|..   ...+.|.+.++..   ................+...|....|... ..  ..       ...++.
T Consensus        86 ~~~~~-l-Y~~d---~~~~~I~v~~~~g---~~~~~~~~~~~~~P~~l~vd~~~g~ly~~-~~--~~-------~~~I~r  147 (266)
T d1ijqa1          86 WIHSN-I-YWTD---SVLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVHGFMYWT-DW--GT-------PAKIKK  147 (266)
T ss_dssp             TTTTE-E-EEEE---TTTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTTTEEEEE-EC--SS-------SCEEEE
T ss_pred             eccce-E-EEEe---cCCCEEEeEecCC---ceEEEEEcCCCCCcceEEEEcccCeEEEe-cc--CC-------CcceeE
Confidence            54322 2 3332   2335788888764   22222222222334556666655555432 11  11       123667


Q ss_pred             EeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEec
Q 013871          180 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGF  256 (434)
Q Consensus       180 l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g~~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~  256 (434)
                      ...+|.....+-...-.....+++.+.++++.++ ....+.|...|+.+.....+   ....-.-+....++.+|..+..
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~-d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~  226 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI  226 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEe-cCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEEC
Confidence            7776653332222223456899999988888875 44456888888875432222   2211111222233556666654


Q ss_pred             CCCCCeEEEEEccCCE
Q 013871          257 GNLPGDMAFWDYVDGK  272 (434)
Q Consensus       257 ~~~~g~i~iwd~~~~~  272 (434)
                      ++  +.|+..+..++.
T Consensus       227 ~~--~~I~~~~~~~g~  240 (266)
T d1ijqa1         227 IN--EAIFSANRLTGS  240 (266)
T ss_dssp             TT--TEEEEEETTTCC
T ss_pred             CC--CeEEEEECCCCc
Confidence            32  567777766653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.93  E-value=3.6  Score=35.90  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=68.5

Q ss_pred             EEEEE--CcCCCE-EEEEEc-cCCCeEEEEecc--cceeE---Ee---CCcCeeEEEECCCCCeEEEEe--cC-------
Q 013871          199 HDVQW--SYSGSE-FAVVYG-FMPASATIFNKK--CRPIL---EL---GSGPYNTVRWNPKGKFLCLAG--FG-------  257 (434)
Q Consensus       199 ~~v~w--spdg~~-~av~~g-~~~~~v~l~d~~--~~~~~---~~---~~~~~~~i~~SP~g~~l~~~~--~~-------  257 (434)
                      |.+..  .++|.. |+++-- ....+|.+|++.  ...+.   ++   .....|.+....+|.++++-.  +.       
T Consensus       100 hGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~  179 (340)
T d1v04a_         100 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSW  179 (340)
T ss_dssp             EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHH
T ss_pred             cceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhh
Confidence            54443  456663 343321 234588888773  22221   22   234568999999999888832  11       


Q ss_pred             -----CCCCeEEEEEccCCEEEEEeeCCCceEEEECCCCCEEEEEEcCCceeeCCcEEEEeecCc
Q 013871          258 -----NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS  317 (434)
Q Consensus       258 -----~~~g~i~iwd~~~~~~i~~~~~~~~~~~~wspdg~~l~tas~~prl~~D~~i~iw~~~g~  317 (434)
                           ...|.+..||....+.+.. ......-+++|||+++|+++.+.     .+.|++|++++.
T Consensus       180 e~~~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~-----~~~i~~y~~~~~  238 (340)
T d1v04a_         180 EMHLGLAWSFVTYYSPNDVRVVAE-GFDFANGINISPDGKYVYIAELL-----AHKIHVYEKHAN  238 (340)
T ss_dssp             HHHTTCCCEEEEEECSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTT
T ss_pred             hHhhcCCceeEEEEcCCceEEEcC-CCCccceeEECCCCCEEEEEeCC-----CCeEEEEEeCCC
Confidence                 1134555666544333322 22356669999999999999875     788999988654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.02  E-value=4.5  Score=35.23  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=43.1

Q ss_pred             EecCCCcEEEEEecCCCC--CC----CcEEEEEcCCCcEEE--EEeecCcCCCCCCeeeecCCCcEEEEecC--CeEEEE
Q 013871            6 TCLRVGLIIQTFQKSSTP--QE----KNVILWKTETGEAVY--QLFQKNMTKTTWPSIRFSSDEAVACRMAT--NEIQFF   75 (434)
Q Consensus         6 ~fSP~g~~L~t~~~~~~~--~d----~~v~iWd~~~g~~~~--~~~~~~~~~~~~~~~~~S~d~~~la~~~~--~~i~v~   75 (434)
                      ....+|+.++..+-....  .+    ..+.+||..+++-..  ......  ........+.+|+++++.+..  +.+.+|
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~--~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH--DMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC--CCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc--ccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            345678877776522111  11    137799999886422  121111  111225678899999998843  589999


Q ss_pred             eCCC
Q 013871           76 DTTD   79 (434)
Q Consensus        76 ~~~~   79 (434)
                      |..+
T Consensus       104 d~~~  107 (387)
T d1k3ia3         104 DSSS  107 (387)
T ss_dssp             EGGG
T ss_pred             cCcc
Confidence            9765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.03  E-value=4.6  Score=33.68  Aligned_cols=231  Identities=8%  Similarity=-0.028  Sum_probs=122.3

Q ss_pred             CcEEEEecCCeEEEEeCCCCCCc-----eeeeeecCCeeEEEEeCCCCCeEEEEecCCCCCCceEEEEEcCCCCCCCcee
Q 013871           61 EAVACRMATNEIQFFDTTDFPKG-----ILYRLRVPGVAAFEVSKAPGSHVAVFVPESKGSPASVQIYACGKDLQSQPLA  135 (434)
Q Consensus        61 ~~~la~~~~~~i~v~~~~~~~~~-----~~~~~~~~~v~~~~~sp~~~~~ia~~~~~~~~~~~~v~i~~~~~~~~~~~i~  135 (434)
                      |.||..+..+.|+-..++.....     .........+..+++.+. ...| +|....   .+.|+..++..   .....
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~-~~~i-ywsd~~---~~~I~~~~l~g---~~~~~   72 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVV-YWTDIS---EPSIGRASLHG---GEPTT   72 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT-TTEE-EEEETT---TTEEEEEESSS---CCCEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeC-CCEE-EEEECC---CCeEEEEEccc---CCcEE
Confidence            56788887788888877543211     111222223566777765 3333 554332   24566666644   22211


Q ss_pred             eeeecccceeEEEECCCCCeEEEEEEecccccCceeecceeEEEEeeCCcceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 013871          136 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG  215 (434)
Q Consensus       136 ~~~~~~~~~~~~~ws~~G~~l~~~~~~~~d~~~~~~~g~~~l~~l~~~~~~~~~v~l~~~~~i~~v~wspdg~~~av~~g  215 (434)
                      .....-.....++...-+..|.+. ..          +...+..++..+.....+.-........++..|....+.....
T Consensus        73 v~~~~~~~p~~iAvD~~~~~lY~~-d~----------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~  141 (263)
T d1npea_          73 IIRQDLGSPEGIALDHLGRTIFWT-DS----------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDW  141 (263)
T ss_dssp             EECTTCCCEEEEEEETTTTEEEEE-ET----------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEEC
T ss_pred             EEEeccccccEEEEeccCCeEEEe-cc----------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeec
Confidence            111111122344444344444332 11          1123555666665322222222356789999998777776433


Q ss_pred             c-CCCeEEEEecccceeEEe---CCcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeC-CCceEEEECCC
Q 013871          216 F-MPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPD  290 (434)
Q Consensus       216 ~-~~~~v~l~d~~~~~~~~~---~~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~-~~~~~~~wspd  290 (434)
                      . ...+|...++.+.....+   .-...+.|++.+.++.|..+..+.  +.|...|++.......+.+ +.+..++..  
T Consensus       142 ~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~~g~~~~~v~~~~~~P~~lav~--  217 (263)
T d1npea_         142 NRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGRRKVLEGLQYPFAVTSY--  217 (263)
T ss_dssp             CSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEEEEEEECCCSEEEEEEE--
T ss_pred             CCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCC--CEEEEEECCCCCeEEEECCCCCcEEEEEE--
Confidence            2 233566667765433333   223457899999999888886544  7899999876543333333 234455553  


Q ss_pred             CCEEEEEEcCCceeeCCcEEEEeec-Ccee
Q 013871          291 GRYFMTATTAPRLQIDNGIKIFHHN-GSLF  319 (434)
Q Consensus       291 g~~l~tas~~prl~~D~~i~iw~~~-g~~~  319 (434)
                      +.+|..+...     .+.|...+.. |+.+
T Consensus       218 ~~~lYwtd~~-----~~~I~~~~~~~g~~~  242 (263)
T d1npea_         218 GKNLYYTDWK-----TNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred             CCEEEEEECC-----CCEEEEEECCCCccc
Confidence            5666666542     5677777764 4443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.65  E-value=8.4  Score=34.86  Aligned_cols=51  Identities=10%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             CCCCeeeecCCCcEEEEec-CCeEEEEeCCCCCCceeeeee--------cCCeeEEEEeCC
Q 013871           50 TTWPSIRFSSDEAVACRMA-TNEIQFFDTTDFPKGILYRLR--------VPGVAAFEVSKA  101 (434)
Q Consensus        50 ~~~~~~~~S~d~~~la~~~-~~~i~v~~~~~~~~~~~~~~~--------~~~v~~~~~sp~  101 (434)
                      ..| .|+|.||++++++-- .+.|++++..+........+.        ..+..+++++|+
T Consensus        28 ~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             Cce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            566 899999999999884 689999987664322211111        125567788875

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.19  E-value=6.4  Score=35.70  Aligned_cols=19  Identities=16%  Similarity=0.184  Sum_probs=14.1

Q ss_pred             cCeeEEEECCCCCeEEEEe
Q 013871          237 GPYNTVRWNPKGKFLCLAG  255 (434)
Q Consensus       237 ~~~~~i~~SP~g~~l~~~~  255 (434)
                      .....|.|.|||.+.++.|
T Consensus       144 H~gg~l~fgpDG~LYvs~G  162 (450)
T d1crua_         144 HQSGRLVIGPDQKIYYTIG  162 (450)
T ss_dssp             CCEEEEEECTTSCEEEEEC
T ss_pred             ccccceeEcCCCCEEEEec
Confidence            3456899999999666655

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=80.39  E-value=23  Score=32.81  Aligned_cols=77  Identities=13%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             CeEEEEecccce-eEEeC-CcCeeEEEECCCCCeEEEEecCCCCCeEEEEEccCCEEEEEeeCCCceE---EEECCCCC-
Q 013871          219 ASATIFNKKCRP-ILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT---SEWSPDGR-  292 (434)
Q Consensus       219 ~~v~l~d~~~~~-~~~~~-~~~~~~i~~SP~g~~l~~~~~~~~~g~i~iwd~~~~~~i~~~~~~~~~~---~~wspdg~-  292 (434)
                      +.+.-+|+.+.. +-+.. ..+...-..+-.|.++..++   .+|.++-+|.++|+.+..++-.....   +.+..||+ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~---~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT---AAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC---TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEEC---CCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            356667775433 32321 11211111222355666665   67899999999999999887653222   77778996 


Q ss_pred             EEEEEE
Q 013871          293 YFMTAT  298 (434)
Q Consensus       293 ~l~tas  298 (434)
                      ||++.+
T Consensus       515 yv~v~a  520 (560)
T d1kv9a2         515 YVAIMA  520 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555544