Citrus Sinensis ID: 013902

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430----
MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVANPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAGRRIARR
cHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccHHHHHHHHcccHHHHHcccccccccccccccHHHcccccccccccccccccHHHHcccccHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEEcccccccEEEEEEEEEccccHHHHHHHHccHHHHHHHHHcccEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEEEcccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccccccccEEEEEEEEccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHcccccccEEEEccccccccc
ccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHcccHccccccccccHHHHHHHHHccccccccHHHHHHcccccccccccccHccccccccccccccccHHcccccccHHHHHHHHHHHccccccccHHHHEEcccccEEEEEEEccccccccEEEEEEEEccccHHHHHHHHccHHHHHHHHHHHHEEEEEEEccccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccccccccccccHHccccccccccccEEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHcc
MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVigwswrprwtglvFLGLRSKFrfiwtaappgfgARRLWLAFTALSAFSACRVLWNnfkgkgtksdaasaaaagegvdgdaspgartaekeqhvvTENDLEHLLQLLERKDGEIEWQTLMekstpnmtyqawrsepetgpavyrtrtvfegatpelvrdffwddEFRRKWDHMLAYVKTleecpltgTMIVQWIKKfpffcsdrEYIIGRRIWEAGKNyycvtkgvpypalpkrdkprrvehYFSSWVIRAVESlkgdgqlsacEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQnarksdssspgrALMASITTKIsvnesmesldpvsseeekgqvanpkyqkdhgidwkwIVIGGTVAVVCALHSGAIGKALLLGAGRRIARR
MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMekstpnmtyQAWRSEPETGPAVYRTRtvfegatpelvrdffwdDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVpypalpkrdkprrVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNarksdssspgrALMASITTKISVNESMESLDPVSSEEEKGQvanpkyqkdhgiDWKWIVIGGTVAVVCALHSGAIgkalllgagrriarr
MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFkgkgtksdaasaaaagegvdgdasPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVANPKYQKDHGIDWKWIVIGGTVAVVCALHSgaigkalllgagrriarr
****LFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFK****************************************LEHLLQLLERKDGEIEWQTLM*******TYQAW******GPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKL*********************************************************KDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAG******
**EVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAP******************************************************************ENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVP****P***KPRRVEHYFSSWVIRAVE*****GQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKA************************************************************IVIGGTVAVVCALHSGAIGKALLLGAGRRI***
MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFKGK********************************VVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMK***************ALMASITTKISVNE*********************YQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAGRRIARR
*DEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFK**********************************VVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNAR************************************************HGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAGRRIAR*
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MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSKFRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFKGKGTKSDAASAAAAGEGVDGDASPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRALMASITTKISVNESMESLDPVSSEEEKGQVANPKYQKDHGIDWKWIVIGGTVAVVCALHSGAIGKALLLGAGRRIARR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query434 2.2.26 [Sep-21-2011]
Q8R1R3373 StAR-related lipid transf yes no 0.331 0.386 0.309 4e-12
Q9NQZ5370 StAR-related lipid transf yes no 0.324 0.381 0.296 2e-11
P02720213 Phosphatidylcholine trans yes no 0.373 0.760 0.281 1e-10
P53809214 Phosphatidylcholine trans yes no 0.410 0.831 0.285 1e-10
P53808214 Phosphatidylcholine trans no no 0.410 0.831 0.28 1e-09
Q9UKL6214 Phosphatidylcholine trans no no 0.405 0.822 0.271 2e-09
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2 Back     alignment and function desciption
 Score = 73.2 bits (178), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 11/155 (7%)

Query: 149 KDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFF---WDDEF 205
           KD E  W+ +M+K      ++ WR  P TG  +Y+ R VF   T    R FF    D E+
Sbjct: 138 KDKEEPWEMVMDKKH----FKLWR-RPITGTHLYQYR-VFGTYTDVTPRQFFNVQLDTEY 191

Query: 206 RRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAGKN--YYCVTK 263
           R+KWD ++  ++ +E   ++G+ ++ W+  FP+    R+Y+  RR     +N     V++
Sbjct: 192 RKKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSR 251

Query: 264 GVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDG 298
            V +P++P+  +  RV  Y S  VIR  +S   +G
Sbjct: 252 AVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286

Mus musculus (taxid: 10090)
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo sapiens GN=STARD7 PE=1 SV=2 Back     alignment and function description
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1 SV=1 Back     alignment and function description
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp PE=2 SV=2 Back     alignment and function description
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1 SV=2 Back     alignment and function description
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
225432943429 PREDICTED: uncharacterized protein LOC10 0.979 0.990 0.716 0.0
255551933442 phosphatidylcholine transfer protein, pu 0.997 0.979 0.733 0.0
356538313434 PREDICTED: stAR-related lipid transfer p 0.988 0.988 0.692 1e-178
224107905429 predicted protein [Populus trichocarpa] 0.986 0.997 0.737 1e-178
449432612439 PREDICTED: uncharacterized protein LOC10 0.995 0.984 0.696 1e-177
356497425434 PREDICTED: stAR-related lipid transfer p 0.988 0.988 0.687 1e-177
356497427426 PREDICTED: stAR-related lipid transfer p 0.981 1.0 0.691 1e-176
18414239433 SRPBCC ligand-binding domain-containing 0.986 0.988 0.685 1e-175
224102165440 predicted protein [Populus trichocarpa] 0.997 0.984 0.705 1e-174
357481005436 Membrane related protein-like protein [M 0.997 0.993 0.693 1e-174
>gi|225432943|ref|XP_002284351.1| PREDICTED: uncharacterized protein LOC100263172 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/438 (71%), Positives = 366/438 (83%), Gaps = 13/438 (2%)

Query: 1   MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSK 60
           M+++ F+ M+F+K+PS+ ETL+DILLCAVPIW+AVMIGLVIGWSWRPRWTGLV+LGLRSK
Sbjct: 1   MEDIFFDFMDFMKKPSVIETLLDILLCAVPIWVAVMIGLVIGWSWRPRWTGLVYLGLRSK 60

Query: 61  FRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFKGK----GTKSDAASAAAAGEGV 116
           FRF+WTA PPGFGARRLWLAFTALSAFS  R +W+NFK +       + ++S A     V
Sbjct: 61  FRFLWTA-PPGFGARRLWLAFTALSAFSVGRTIWSNFKVRRKGPTAAAASSSPAGTARSV 119

Query: 117 DGDASPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE 176
           +G+        E EQ +VTENDL+HLL +LERKDGE+ WQ +ME+STPNM+YQAWR EPE
Sbjct: 120 EGNG-------EIEQDIVTENDLDHLLHVLERKDGEMAWQGMMERSTPNMSYQAWRHEPE 172

Query: 177 TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKF 236
            GP VYR+RTVFE ATPE+VRDFFWDDEFR KWD MLAY K LEE P T TMIV WIKKF
Sbjct: 173 NGPTVYRSRTVFEDATPEVVRDFFWDDEFRPKWDPMLAYFKILEEFPHTATMIVHWIKKF 232

Query: 237 PFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKG 296
           PFFCSDREYIIGRRIWEAGK YYCVTKGVPYP LPKRDKPRRVE YFSSW+IRAVES KG
Sbjct: 233 PFFCSDREYIIGRRIWEAGKTYYCVTKGVPYPGLPKRDKPRRVELYFSSWIIRAVESSKG 292

Query: 297 DGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRA 356
           +G +SACEV+L+HYE+MGIPKDVAKL +RHGMWG VKKL+SGM+AYQNARK+++     A
Sbjct: 293 EG-MSACEVSLVHYEDMGIPKDVAKLGVRHGMWGTVKKLHSGMRAYQNARKTEAPLSRSA 351

Query: 357 LMASITTKISVNESMESLDPVSSEEEKGQVANPKYQKDHGIDWKWIVIGGTVAVVCALHS 416
           LMA ITTKIS +E+ +SL+P S EEEKGQV + + +KD GIDWKWIVIGGTVA+VC LH+
Sbjct: 352 LMARITTKISFDETSDSLEPASGEEEKGQVVDIQRKKDKGIDWKWIVIGGTVALVCGLHT 411

Query: 417 GAIGKALLLGAGRRIARR 434
           G IGKALL+GAG+R  RR
Sbjct: 412 GTIGKALLIGAGQRFRRR 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551933|ref|XP_002517011.1| phosphatidylcholine transfer protein, putative [Ricinus communis] gi|223543646|gb|EEF45174.1| phosphatidylcholine transfer protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538313|ref|XP_003537648.1| PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|224107905|ref|XP_002314649.1| predicted protein [Populus trichocarpa] gi|222863689|gb|EEF00820.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432612|ref|XP_004134093.1| PREDICTED: uncharacterized protein LOC101216617 [Cucumis sativus] gi|449529190|ref|XP_004171584.1| PREDICTED: uncharacterized LOC101216617 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356497425|ref|XP_003517561.1| PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356497427|ref|XP_003517562.1| PREDICTED: stAR-related lipid transfer protein 7, mitochondrial-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|18414239|ref|NP_567433.1| SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana] gi|16226251|gb|AAL16115.1|AF428283_1 AT4g14500/dl3290w [Arabidopsis thaliana] gi|22531042|gb|AAM97025.1| expressed protein [Arabidopsis thaliana] gi|31376367|gb|AAP49510.1| At4g14500 [Arabidopsis thaliana] gi|332658051|gb|AEE83451.1| SRPBCC ligand-binding domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224102165|ref|XP_002312574.1| predicted protein [Populus trichocarpa] gi|222852394|gb|EEE89941.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357481005|ref|XP_003610788.1| Membrane related protein-like protein [Medicago truncatula] gi|355512123|gb|AES93746.1| Membrane related protein-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query434
TAIR|locus:2129790433 AT4G14500 "AT4G14500" [Arabido 0.944 0.946 0.662 1.7e-153
TAIR|locus:2094568419 AT3G23080 "AT3G23080" [Arabido 0.910 0.942 0.646 1.1e-142
TAIR|locus:2010836385 CP5 "AT1G64720" [Arabidopsis t 0.652 0.735 0.544 1.8e-95
TAIR|locus:2153428449 AT5G54170 "AT5G54170" [Arabido 0.663 0.641 0.541 2.4e-91
TAIR|locus:505006338440 AT3G13062 "AT3G13062" [Arabido 0.576 0.568 0.320 1.1e-32
TAIR|locus:2012080403 AT1G55960 "AT1G55960" [Arabido 0.571 0.615 0.320 2.6e-31
RGD|3276214 Pctp "phosphatidylcholine tran 0.410 0.831 0.3 1e-13
MGI|MGI:107375214 Pctp "phosphatidylcholine tran 0.410 0.831 0.29 9.7e-13
UNIPROTKB|P02720213 PCTP "Phosphatidylcholine tran 0.410 0.835 0.275 1.3e-12
UNIPROTKB|Q9UKL6214 PCTP "Phosphatidylcholine tran 0.405 0.822 0.282 3.4e-12
TAIR|locus:2129790 AT4G14500 "AT4G14500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1497 (532.0 bits), Expect = 1.7e-153, P = 1.7e-153
 Identities = 279/421 (66%), Positives = 324/421 (76%)

Query:     1 MDEVLFEMMEFLKRPSITETLVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLVFLGLRSK 60
             MDE  F+++ F K PS TET VDILLCAVPIWLAVMIGL+IGWSWRPRWTGL++LG RSK
Sbjct:     1 MDETYFDLLNFFKNPSFTETFVDILLCAVPIWLAVMIGLLIGWSWRPRWTGLIYLGFRSK 60

Query:    61 FRFIWTAAPPGFGARRLWLAFTALSAFSACRVLWNNFXXXXXXXXXXXXXXXX----XXX 116
              RF+WTA PPGFGARRLWLAFTALSAFS CR +W+                         
Sbjct:    61 LRFLWTA-PPGFGARRLWLAFTALSAFSVCRTIWSRNDTRANKSATGSASSQTPVEDNDE 119

Query:   117 XXXXXPGARTAEKEQHVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE 176
                   G+      + +VTENDLEHLLQLLE  +  +EWQ++M+K+TPNM+YQAWR EPE
Sbjct:   120 SGLASRGSDNGTVTEDIVTENDLEHLLQLLEVGNAALEWQSMMDKTTPNMSYQAWRHEPE 179

Query:   177 TGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKF 236
             TGP +YR+RTVFE ATP++VRDFFWDDEFR KWD MLA  KTLEE   TGTMIVQW KKF
Sbjct:   180 TGPVIYRSRTVFEDATPDIVRDFFWDDEFRPKWDFMLANFKTLEEDTQTGTMIVQWRKKF 239

Query:   237 PFFCSDREYIIGRRIWEAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKG 296
             PFFCSDREYIIGRRIWE+GK YYCVTKGVPYPALPKRDKPRRVE YFSSWVIRAVES KG
Sbjct:   240 PFFCSDREYIIGRRIWESGKKYYCVTKGVPYPALPKRDKPRRVELYFSSWVIRAVESRKG 299

Query:   297 DGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNARKSDSSSPGRA 356
             DGQ +ACEV+L+HYE+MGIPKDVAKL +RHGMWG VKKLNSG++AYQ+ARKSDSS    A
Sbjct:   300 DGQQTACEVSLVHYEDMGIPKDVAKLGVRHGMWGAVKKLNSGLRAYQSARKSDSSLSRIA 359

Query:   357 LMASITTKISVNESMESLDPVSSEEEKGQVANPKYQKDH-GIDWKWIVIGGTVAVVCALH 415
              MA ITTK++    M+S +  S +E++ +      Q+DH  +DWKW+V+GG VA+ C LH
Sbjct:   360 QMARITTKLN----MDSAESSSRDEDRSRAMEYARQRDHLRMDWKWVVVGG-VALACGLH 414

Query:   416 S 416
             S
Sbjct:   415 S 415
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2094568 AT3G23080 "AT3G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010836 CP5 "AT1G64720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153428 AT5G54170 "AT5G54170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006338 AT3G13062 "AT3G13062" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012080 AT1G55960 "AT1G55960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|3276 Pctp "phosphatidylcholine transfer protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107375 Pctp "phosphatidylcholine transfer protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P02720 PCTP "Phosphatidylcholine transfer protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKL6 PCTP "Phosphatidylcholine transfer protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
cd08870209 cd08870, START_STARD2_7-like, Lipid-binding START 1e-97
cd08911207 cd08911, START_STARD7-like, Lipid-binding START do 1e-15
cd08910207 cd08910, START_STARD2-like, Lipid-binding START do 3e-14
cd00177193 cd00177, START, Lipid-binding START domain of mamm 2e-13
smart00234205 smart00234, START, in StAR and phosphatidylcholine 5e-07
cd08871222 cd08871, START_STARD10-like, Lipid-binding START d 4e-04
pfam01852205 pfam01852, START, START domain 0.002
>gnl|CDD|176879 cd08870, START_STARD2_7-like, Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information 
 Score =  290 bits (745), Expect = 1e-97
 Identities = 114/213 (53%), Positives = 150/213 (70%), Gaps = 6/213 (2%)

Query: 132 HVVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPE-TGPAVYRTRTVFEG 190
             V+E DL  L+Q L+       WQ +M+KSTP+M+YQAWR +P+ TG   Y  R VFE 
Sbjct: 1   GHVSEEDLRDLVQELQEGAEGQAWQQVMDKSTPDMSYQAWRRKPKGTGLYEYLVRGVFED 60

Query: 191 ATPELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR 250
            TPEL+RDF+WDDE+R+KWD  +   +TLEE   +GT IV+W+KKFPF  SDREY+I RR
Sbjct: 61  CTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARR 120

Query: 251 IWE-AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIH 309
           +WE   ++Y CVTKGVPYP++P R   +RV+ Y SS VIRAV   KGDGQ SACEV   H
Sbjct: 121 LWESDDRSYVCVTKGVPYPSVP-RSGRKRVDDYESSLVIRAV---KGDGQGSACEVTYFH 176

Query: 310 YEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAY 342
             + GIP+++AKLA++ GM G +KKL + ++ Y
Sbjct: 177 NPDGGIPRELAKLAVKRGMPGFLKKLENALRKY 209

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of PtdCho to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers. It showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol. Length = 209
>gnl|CDD|176920 cd08911, START_STARD7-like, Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>gnl|CDD|176919 cd08910, START_STARD2-like, Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176880 cd08871, START_STARD10-like, Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 434
KOG2761219 consensus START domain-containing proteins involve 100.0
cd08870209 START_STARD2_7-like Lipid-binding START domain of 100.0
cd08910207 START_STARD2-like Lipid-binding START domain of ma 100.0
cd08911207 START_STARD7-like Lipid-binding START domain of ma 100.0
cd08871222 START_STARD10-like Lipid-binding START domain of m 100.0
cd08872235 START_STARD11-like Ceramide-binding START domain o 100.0
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 100.0
cd08904204 START_STARD6-like Lipid-binding START domain of ma 100.0
cd08906209 START_STARD3-like Cholesterol-binding START domain 100.0
cd08905209 START_STARD1-like Cholesterol-binding START domain 100.0
smart00234206 START in StAR and phosphatidylcholine transfer pro 100.0
cd08903208 START_STARD5-like Lipid-binding START domain of ma 100.0
cd08874205 START_STARD9-like C-terminal START domain of mamma 99.98
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.98
cd08914236 START_STARD15-like Lipid-binding START domain of m 99.97
cd08902202 START_STARD4-like Lipid-binding START domain of ma 99.97
cd08873235 START_STARD14_15-like Lipid-binding START domain o 99.97
cd08913240 START_STARD14-like Lipid-binding START domain of m 99.97
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 99.97
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.97
cd00177193 START Lipid-binding START domain of mammalian STAR 99.96
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 99.96
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 99.96
cd08908204 START_STARD12-like C-terminal lipid-binding START 99.93
cd08907205 START_STARD8-like C-terminal lipid-binding START d 99.93
cd08909205 START_STARD13-like C-terminal lipid-binding START 99.92
PLN00188 719 enhanced disease resistance protein (EDR2); Provis 99.91
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 99.62
KOG1739611 consensus Serine/threonine protein kinase GPBP [Si 99.54
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 99.27
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.19
PF11274184 DUF3074: Protein of unknown function (DUF3074) 99.08
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 99.04
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 98.91
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 98.76
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.33
PRK10724158 hypothetical protein; Provisional 98.19
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 98.02
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 98.0
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 97.83
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 97.78
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 97.6
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 97.27
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 97.26
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 97.13
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 96.89
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 96.88
COG5637217 Predicted integral membrane protein [Function unkn 96.19
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 95.95
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 95.91
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 95.73
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 95.04
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 93.61
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 92.96
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 88.95
KOG3845241 consensus MLN, STAR and related lipid-binding prot 88.2
cd08893136 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi 85.79
COG3427146 Carbon monoxide dehydrogenase subunit G, CoxG [Ene 85.08
cd08899157 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan 83.45
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6.4e-48  Score=364.56  Aligned_cols=210  Identities=50%  Similarity=0.840  Sum_probs=189.3

Q ss_pred             CCCCCHHHHHHHHHHHhcC--CCCCCcEEEEeccCCCcceEEEe-ecCCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhh
Q 013902          131 QHVVTENDLEHLLQLLERK--DGEIEWQTLMEKSTPNMTYQAWR-SEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRR  207 (434)
Q Consensus       131 ~~~vtdeDf~~l~~lle~~--dg~~~We~v~dk~~~~~~ikVwr-R~~esgl~~yRa~gv~edaspe~V~dll~D~e~R~  207 (434)
                      ...||++||.+++++++.+  +++++|+++++++    ++.+|+ |.+++|+.+||+.|+++|+||+.|+|+++|.+||+
T Consensus         5 ~~~vs~~~~~~~~~~~e~~~~~~~~~We~~~~k~----~~~i~~q~~~~~g~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRk   80 (219)
T KOG2761|consen    5 DGGVSEEDLPELLDLLEEKACDAGQGWELVMDKS----TPSIWRQRRPKTGLYEYKSRTVFEDVTPEIVRDVQWDDEYRK   80 (219)
T ss_pred             cCcccccchHHHHHhhcccccCcccchhhhcccC----CceEEEEcccCCCCEEEEEEEEEcCCCHHHHHHHHhhhHHHH
Confidence            3569999999999999998  6788999999996    778888 77789999999999999999999999999999999


Q ss_pred             hhhhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEecC-CEEEEEEeccCCCCCCCCCCCeEeeeeeEEE
Q 013902          208 KWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWEAG-KNYYCVTKGVPYPALPKRDKPRRVEHYFSSW  286 (434)
Q Consensus       208 ~WD~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~~~-~~yvivskSV~hp~~P~~~g~VRve~~~sgw  286 (434)
                      +||.++.+.++|+++..+|++|+||+.|||+|++|||||+.||+|+++ +.++|+++++.||++|+++++||+..+.+||
T Consensus        81 kWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~  160 (219)
T KOG2761|consen   81 KWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGW  160 (219)
T ss_pred             HHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEE
Confidence            999999999999998778999999999999999999999999999877 8899999999999999999999999999999


Q ss_pred             EEE-EeecCCCCCCccceEEEEEEeecCCCCHHHHHHHHhhchHHHHHHHHHHHHhhHhhh
Q 013902          287 VIR-AVESLKGDGQLSACEVNLIHYEEMGIPKDVAKLAIRHGMWGGVKKLNSGMKAYQNAR  346 (434)
Q Consensus       287 vIr-pv~s~~~dG~~~ac~Vty~~~~DpGIP~wlvN~av~~g~~~~lkkL~~alrkY~~~R  346 (434)
                      +|+ +..+..++|  ++|+++|+++.+.|||.|++|+++++|||+++++|++||++|+++|
T Consensus       161 ~I~~~~~~~~~~~--~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~~~  219 (219)
T KOG2761|consen  161 LIRVESRSGDEQG--CACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQEKR  219 (219)
T ss_pred             EEEcccccCCCCc--cEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhhcC
Confidence            999 555543333  4455555544444599999999999999999999999999999875

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms] Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>PF11274 DUF3074: Protein of unknown function (DUF3074) Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain Back     alignment and domain information
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] Back     alignment and domain information
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1ln1_A214 Crystal Structure Of Human Phosphatidylcholine Tran 2e-10
1ln2_A214 Crystal Structure Of Human Phosphatidylcholine Tran 7e-10
>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine Length = 214 Back     alignment and structure 
Iteration: 1

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 19/195 (9%)
Query: 154 EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDHML 213
           +WQ L+E S  ++ Y+    + +TG   Y+   V E  +P L+ D + D ++R++WD   
Sbjct: 29  DWQLLVETSGISI-YRLL--DKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ-- 83
Query: 214 AYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRR----IWEAGKNYYCVTKGVPYPA 269
            YVK L E    G  +V W  K+PF  S+R+Y+  R+      E  K +  + +    P 
Sbjct: 84  -YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQ 142
Query: 270 LPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHG 327
           L +R    RV+ Y  S  I +      DG+    +V + +++  G  IP  +   A ++G
Sbjct: 143 LGERSGVIRVKQYKQSLAIES------DGK-KGSKVFMYYFDNPGGQIPSWLINWAAKNG 195
Query: 328 MWGGVKKLNSGMKAY 342
           +   +K +    + Y
Sbjct: 196 VPNFLKDMARACQNY 210
>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer Protein In Complex With Dilinoleoylphosphatidylcholine (Seleno-Met Protein) Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query434
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 7e-41
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 1e-32
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 1e-30
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 8e-30
3qsz_A189 STAR-related lipid transfer protein; structural ge 2e-28
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 3e-23
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 7e-23
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 8e-12
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 3e-07
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Length = 214 Back     alignment and structure
 Score =  144 bits (363), Expect = 7e-41
 Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 19/217 (8%)

Query: 133 VVTENDLEHLLQLLERKDGEIEWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGAT 192
              E   E   +L +      +WQ L+E S  ++ Y+    + +TG   Y+   V E  +
Sbjct: 8   FSEEQFWEACAELQQPALAGADWQLLVETSGISI-YR--LLDKKTGLYEYKVFGVLEDCS 64

Query: 193 PELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW 252
           P L+ D + D ++R++WD    YVK L E    G  +V W  K+PF  S+R+Y+  R+  
Sbjct: 65  PTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRR 121

Query: 253 ----EAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLI 308
               E  K +  + +    P L +R    RV+ Y  S  I +             +V + 
Sbjct: 122 DLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG-------SKVFMY 174

Query: 309 HYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQ 343
           +++  G  IP  +   A ++G+   +K +    + Y 
Sbjct: 175 YFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYL 211
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Length = 221 Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Length = 255 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Length = 229 Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Length = 189 Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Length = 224 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Length = 231 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Length = 258 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 100.0
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 100.0
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 100.0
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 100.0
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 100.0
3qsz_A189 STAR-related lipid transfer protein; structural ge 100.0
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 100.0
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.97
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 99.97
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 98.43
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 98.34
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 97.96
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 97.9
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 97.88
2pcs_A162 Conserved protein; structural genomics, unknown fu 97.49
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 97.43
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 97.19
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 97.15
2le1_A151 Uncharacterized protein; structural genomics, nort 96.48
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 96.42
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 95.56
3p51_A160 Uncharacterized protein; structural genomics, PSI- 95.26
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 95.2
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 94.72
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 94.66
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 94.66
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 94.59
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 94.55
3pu2_A164 Uncharacterized protein; SRPBCC superfamily, PSI-b 94.22
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 93.76
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 93.63
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 92.27
3oqu_A205 Abscisic acid receptor PYL9; RCAR1, hormone recept 91.37
2l9p_A164 Uncharacterized protein; structural genomics, nort 91.23
1xfs_A178 NC_840354, conserved hypothetical protein; structu 90.52
2leq_A146 Uncharacterized protein; start domains, structural 89.7
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 89.01
2lf2_A175 Uncharacterized protein; NESG, structural genomics 88.81
2l8o_A144 Uncharacterized protein; mixed alpha-beta protein, 88.2
1z94_A147 Conserved hypothetical protein; NESG, CV1439, stru 87.41
3oji_A189 Abscisic acid receptor PYL3; crystal, PP2C, pyraba 87.39
2lcg_A142 Uncharacterized protein; start domain, structural 87.25
3k3k_A211 Abscisic acid receptor PYR1; ABA receptor, plant h 86.34
3uid_A168 Putative uncharacterized protein; SRPBCC superfami 85.05
3q64_A162 MLL3774 protein; structural genomics, PSI-biology, 84.98
2ldk_A172 Uncharacterized protein; structural genomics, nort 84.2
1xuv_A178 Hypothetical protein MM0500; alpha-beta protein, n 83.21
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 82.35
1xn6_A143 Hypothetical protein BC4709; structural genomics, 82.01
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 81.77
2lak_A160 AHSA1-like protein RHE_CH02687; NESG, structural g 80.96
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
Probab=100.00  E-value=6.7e-38  Score=291.63  Aligned_cols=200  Identities=24%  Similarity=0.427  Sum_probs=176.5

Q ss_pred             CCCCHHHHHHHHHHHhcCC-CCCCcEEEEeccCCCcceEEEeec-CCCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhh
Q 013902          132 HVVTENDLEHLLQLLERKD-GEIEWQTLMEKSTPNMTYQAWRSE-PETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKW  209 (434)
Q Consensus       132 ~~vtdeDf~~l~~lle~~d-g~~~We~v~dk~~~~~~ikVwrR~-~esgl~~yRa~gv~edaspe~V~dll~D~e~R~~W  209 (434)
                      ..|||+||+++++.+++.+ ++.+|+++++++    +++||+|. +++++..||++++++|++++++++++.|.++|++|
T Consensus         6 ~~~~~~~f~~~~~~l~~~~~~~~~W~~~~~~~----~v~v~~~~~~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~W   81 (214)
T 1ln1_A            6 GSFSEEQFWEACAELQQPALAGADWQLLVETS----GISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQW   81 (214)
T ss_dssp             --CCHHHHHHTTHHHHSCCCTTTTCEEEEEET----TEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHH
T ss_pred             CccCHHHHHHHHHHhccCCCCCCCcEEEEECC----CeEEEEeccCCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHH
Confidence            4699999999999998876 456899999985    89999995 55889999999999779999999999999999999


Q ss_pred             hhhcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe---cCC-EEEEEEeccCCCCCCCCCCCeEeeeeeEE
Q 013902          210 DHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE---AGK-NYYCVTKGVPYPALPKRDKPRRVEHYFSS  285 (434)
Q Consensus       210 D~~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~---~~~-~yvivskSV~hp~~P~~~g~VRve~~~sg  285 (434)
                      |+++.++++|+.   +|++++|++.++|||+++||||+.|++..   +++ .|+++.+|++||.+|+++|+||++.+.++
T Consensus        82 d~~~~~~~vle~---~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~  158 (214)
T 1ln1_A           82 DQYVKELYEQEC---NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQS  158 (214)
T ss_dssp             CTTEEEEEEEEE---TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEE
T ss_pred             HHHHhhEEEecc---CCCEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEE
Confidence            999999999975   45789999999999999999999887643   333 46788999999999999999999999999


Q ss_pred             EEEEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhhHhh
Q 013902          286 WVIRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAYQNA  345 (434)
Q Consensus       286 wvIrpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY~~~  345 (434)
                      |+|+|..    ++   .|+|+|++|.|||  ||.|++|++++++++.++++|++++++|.++
T Consensus       159 ~~i~p~~----~~---~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k~~~~y~~~  213 (214)
T 1ln1_A          159 LAIESDG----KK---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK  213 (214)
T ss_dssp             EEEEECS----SS---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC---
T ss_pred             EEEecCC----CC---ceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence            9999973    12   3999999999995  9999999999999999999999999998764
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} Back     alignment and structure
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Back     alignment and structure
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} Back     alignment and structure
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5 Back     alignment and structure
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 Back     alignment and structure
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* Back     alignment and structure
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} Back     alignment and structure
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Back     alignment and structure
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 Back     alignment and structure
>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} Back     alignment and structure
>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} Back     alignment and structure
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 Back     alignment and structure
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 434
d1ln1a_203 d.129.3.2 (A:) Phosphatidylcholine transfer protei 1e-30
d1em2a_214 d.129.3.2 (A:) Lipid transport domain of Mln64 {Hu 3e-26
d1jssa_199 d.129.3.2 (A:) Cholesterol-regulated Start protein 3e-18
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 1e-30
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 20/215 (9%)

Query: 135 TENDLEHLLQLLERKDGEI-EWQTLMEKSTPNMTYQAWRSEPETGPAVYRTRTVFEGATP 193
           +E         L++      +WQ L+E S   ++      + +TG   Y+   V E  +P
Sbjct: 2   SEEQFWEACAELQQPALAGADWQLLVETS--GISIY-RLLDKKTGLYEYKVFGVLEDCSP 58

Query: 194 ELVRDFFWDDEFRRKWDHMLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIW- 252
            L+ D + D ++R++WD    YVK L E    G  +V W  K+PF  S+R+Y+  R+   
Sbjct: 59  TLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQRRD 115

Query: 253 ---EAGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWVIRAVESLKGDGQLSACEVNLIH 309
              E  K +  + +    P L +R    RV+ Y  S  I +             +V + +
Sbjct: 116 LDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKG-------SKVFMYY 168

Query: 310 YEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAY 342
           ++  G  IP  +   A ++G+   +K +    + Y
Sbjct: 169 FDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY 203
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Length = 199 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query434
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 100.0
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 100.0
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 99.97
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 99.96
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 98.54
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 98.36
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 98.29
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 97.87
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 97.51
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 97.43
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 97.38
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 91.52
d1z94a1143 Hypothetical protein CV1439 {Chromobacterium viola 91.47
d1xfsa_165 Hypothetical protein NE0264 {Nitrosomonas europaea 91.28
d2qpva1133 Uncharacterized protein Atu1531 {Agrobacterium tum 90.59
d3elia1143 Uncharacterized protein SPO3351 {Silicibacter pome 83.96
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-35  Score=269.84  Aligned_cols=195  Identities=25%  Similarity=0.431  Sum_probs=172.6

Q ss_pred             CCHHHHHHHHHHHhcCC-CCCCcEEEEeccCCCcceEEEeecC-CCCCeEEEEEEEEcCCCHHHHHHHhcCchhhhhhhh
Q 013902          134 VTENDLEHLLQLLERKD-GEIEWQTLMEKSTPNMTYQAWRSEP-ETGPAVYRTRTVFEGATPELVRDFFWDDEFRRKWDH  211 (434)
Q Consensus       134 vtdeDf~~l~~lle~~d-g~~~We~v~dk~~~~~~ikVwrR~~-esgl~~yRa~gv~edaspe~V~dll~D~e~R~~WD~  211 (434)
                      +++++++++++.+++.. .+.+|+++.+++    ++++|+|.. ++++..||++++|++++++++++++.|.+.|++||+
T Consensus         1 ~~~~~~~~~~~~l~~~~~~~~~W~~~~~~~----gv~vy~~~~~~~~~~~~k~~~~i~~~~~~~~~~~l~d~~~~~~Wd~   76 (203)
T d1ln1a_           1 FSEEQFWEACAELQQPALAGADWQLLVETS----GISIYRLLDKKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQ   76 (203)
T ss_dssp             CCHHHHHHTTHHHHSCCCTTTTCEEEEEET----TEEEEEEEETTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCT
T ss_pred             CCHHHHHHHHHHhcCcccCCCCCEEEEecC----CEEEEEEecCCCCcEEEEEEEEEcCCCHHHHHHHHcCHhHhhhhcc
Confidence            58999999999888875 466899999995    999999964 578899999999988999999999999999999999


Q ss_pred             hcceeEEEEEecCCCcEEEEEEEeeccccCCceeEEEEEEEe----cCCEEEEEEeccCCCCCCCCCCCeEeeeeeEEEE
Q 013902          212 MLAYVKTLEECPLTGTMIVQWIKKFPFFCSDREYIIGRRIWE----AGKNYYCVTKGVPYPALPKRDKPRRVEHYFSSWV  287 (434)
Q Consensus       212 ~l~~~evLe~~~~dg~~IVY~~~k~PwPvS~RDfV~~Rri~~----~~~~yvivskSV~hp~~P~~~g~VRve~~~sgwv  287 (434)
                      ++.+  +++..+ +++.++|+..++|||+++||||+.|+...    +...+++++.++.||.+|+.+|+||++.+.++|+
T Consensus        77 ~~~~--~~~~~~-~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~  153 (203)
T d1ln1a_          77 YVKE--LYEQEC-NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLA  153 (203)
T ss_dssp             TEEE--EEEEEE-TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEE
T ss_pred             cceE--EEEEcc-CCcEEEEEEcccccccCCceEEEEEEEEEccCCCCeEEEEEeecccCCcCcccCCccccceeeEEEE
Confidence            9875  344333 56789999999999999999999887653    2356788899999999999999999999999999


Q ss_pred             EEEeecCCCCCCccceEEEEEEeecCC--CCHHHHHHHHhhchHHHHHHHHHHHHhh
Q 013902          288 IRAVESLKGDGQLSACEVNLIHYEEMG--IPKDVAKLAIRHGMWGGVKKLNSGMKAY  342 (434)
Q Consensus       288 Irpv~s~~~dG~~~ac~Vty~~~~DpG--IP~wlvN~av~~g~~~~lkkL~~alrkY  342 (434)
                      |+|+.+    +   +|+|+|+.|.|||  ||+|++|+++++.+++++++|++++++|
T Consensus       154 l~~~~~----~---~t~v~~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~l~k~~~~y  203 (203)
T d1ln1a_         154 IESDGK----K---GSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNY  203 (203)
T ss_dssp             EEECSS----S---SEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             EEecCC----C---cEEEEEEEEcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999742    2   3999999999995  9999999999999999999999999987
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure