Citrus Sinensis ID: 013914
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | 2.2.26 [Sep-21-2011] | |||||||
| Q43497 | 433 | Monodehydroascorbate redu | N/A | no | 0.997 | 1.0 | 0.834 | 0.0 | |
| Q40977 | 433 | Monodehydroascorbate redu | N/A | no | 0.990 | 0.993 | 0.811 | 0.0 | |
| Q42711 | 434 | Monodehydroascorbate redu | N/A | no | 1.0 | 1.0 | 0.822 | 0.0 | |
| Q9LFA3 | 434 | Probable monodehydroascor | yes | no | 1.0 | 1.0 | 0.781 | 0.0 | |
| Q93WJ8 | 435 | Probable monodehydroascor | no | no | 0.995 | 0.993 | 0.766 | 0.0 | |
| Q9SR59 | 441 | Probable monodehydroascor | no | no | 0.995 | 0.979 | 0.688 | 1e-165 | |
| Q9LK94 | 488 | Probable monodehydroascor | no | no | 0.976 | 0.868 | 0.549 | 1e-128 | |
| P92947 | 493 | Monodehydroascorbate redu | no | no | 0.930 | 0.819 | 0.477 | 1e-102 | |
| P83966 | 166 | Monodehydroascorbate redu | N/A | no | 0.327 | 0.855 | 0.605 | 1e-51 | |
| D5IGG6 | 414 | Ferredoxin--NAD(P)(+) red | N/A | no | 0.859 | 0.900 | 0.283 | 1e-30 |
| >sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/434 (83%), Positives = 394/434 (90%), Gaps = 1/434 (0%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G FKYQ LVI
Sbjct: 61 ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
L++NNI+V+MVYPEPWCMPRLFT IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGD D SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419
Query: 421 DVLKNEGLSFASKI 434
D L EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Solanum lycopersicum (taxid: 4081) EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4 |
| >sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/430 (81%), Positives = 380/430 (88%)
Query: 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
SFKY+I+GGGVSAGYAAREF KQGV PGELAIISKEAVAPYERPALSKAYLFPE ARLP
Sbjct: 4 SFKYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFPESPARLP 63
Query: 65 GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
GFH CVGSGGERLLPEWY EKGI+L LSTEIV AD+A+K L SA G F YQ LVIATGS
Sbjct: 64 GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123
Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 184
V+RLTDFGV GA+AKNIFYLRE+DDADKL EAIK KKN K VVVGGGYIGLELSA LK+
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183
Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244
N++DV+MVYPEPWCMPRLFT++IAAFYEGYYANKGI IIKGTVAVGFT N+DGEVKEVKL
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEVKL 243
Query: 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
KDGR LEADIV+VGVGGRP ISLFKGQV E GGI+TD FFKTS DVYAVGDVATFP+K
Sbjct: 244 KDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLK 303
Query: 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG 364
LY ++RRVEHVDHARKSAEQA K I A + GK+V YDYLPYFYSR+FDLSWQFYGDNVG
Sbjct: 304 LYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVG 363
Query: 365 DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK 424
+TVLFGDND AS+ KFGTYWIK+GKVVG FLE GTP+ENKAIAKVAR +P+VE ++ L
Sbjct: 364 ETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLA 423
Query: 425 NEGLSFASKI 434
EGLSFASKI
Sbjct: 424 EEGLSFASKI 433
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/434 (82%), Positives = 392/434 (90%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA+++FKYVILGGGV+AGYAAREF KQG+ PGELAIISKEAVAPYERPALSKAYLFPE
Sbjct: 1 MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV AD+ +K L SA G I+ YQ L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV++L+DFGV+GADAKNIFYLREIDDAD+LVEAIKAK+NGK VVVGGGYIGLEL A
Sbjct: 121 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
AL+INN DVSMVYPEPWCMPRLFT +IAAFYEGYYA KGI IIKGTVAVGFT + +GEVK
Sbjct: 181 ALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVG RPL SLFKGQ+ E KGGI+TD+FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E+RRVEHVDH+RKSAEQAVK I A+E GK + YDYLPYFYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVGD VLFGDN SATHKFG+YWIKDGKVVG FLESG+PEENKAIAKVAR+QPSVES
Sbjct: 361 DNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESS 420
Query: 421 DVLKNEGLSFASKI 434
D+L EG+SFASK+
Sbjct: 421 DLLLKEGISFASKV 434
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/434 (78%), Positives = 390/434 (89%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKY+ILGGGVSAGYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG
Sbjct: 1 MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFH CVGSGGE+LLPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+I
Sbjct: 61 ARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTVLRLTDFGV+GAD+KNI YLREIDDADKLVEAIKAKK GKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
L+INN+DV+MV+PEPWCMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT +GEVK
Sbjct: 181 VLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EV+LKDGRTLEADIV+VGVG +PL SLFKGQV E+KGGI+TD FFKTS DVYAVGDVAT
Sbjct: 241 EVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+K+Y ++RRVEHVDH+RKSAEQAVK I A EGG V YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVGD+VLFGD++ ++ +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESL
Sbjct: 361 DNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESL 420
Query: 421 DVLKNEGLSFASKI 434
D L +G+SFA+KI
Sbjct: 421 DELVKQGISFAAKI 434
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/432 (76%), Positives = 372/432 (86%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKSFKYVI+GGGV+AGYAAREF QGVKPGELAIIS+E V PYERPALSK Y+ E A
Sbjct: 4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
LP F+V G GGER P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct: 64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL 182
GS+V+RL+DFGV GADAKNIFYLRE++DAD L A++ K+ GKAVVVGGGYIGLEL AAL
Sbjct: 124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183
Query: 183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct: 184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS DVYA+GDVATFP
Sbjct: 244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
MKLY EMRRVEHVDHARKSAEQAVK I A E G ++ YDYLPYFYSRAFDLSWQFYGDN
Sbjct: 304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363
Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 422
VG++VLFGDND S KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct: 364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423
Query: 423 LKNEGLSFASKI 434
L EGLSFA+ I
Sbjct: 424 LSKEGLSFATNI 435
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 298/433 (68%), Positives = 356/433 (82%), Gaps = 1/433 (0%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+ E
Sbjct: 4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
L +VC G+G + P WYKEKGI+LI+ TEIV+AD+ASKTL+S G I+KYQ L+IAT
Sbjct: 64 LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNGKAVVVGGGYIGLELSAA 181
GST +RL++ GV+ AD KNIFYLREI+D+D+L A++ + GKAV++GGG++GLE+S+A
Sbjct: 124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183
Query: 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241
L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct: 184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243
Query: 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
VKL+DGRTLEA+IVV GVG RP SLFKGQ+ E KGGI+TD FFKTS DVYA+GDVATF
Sbjct: 244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303
Query: 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
PMK+Y RRVEH D+ARKSA QAVK I A E GKT+ YDYLPYFYSR F LSW+FYG+
Sbjct: 304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363
Query: 362 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421
NVG++VLFGDND S KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct: 364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423
Query: 422 VLKNEGLSFASKI 434
VL EGLSFA+K
Sbjct: 424 VLSEEGLSFATKF 436
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/433 (54%), Positives = 308/433 (71%), Gaps = 9/433 (2%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
++F YVILGGGV+AGYAA EF ++GV GEL IIS+E VAPYERPALSK +L PE ARL
Sbjct: 3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
P FH CVG+ E+L P+WYK+ GIEL+L T + D+ KTLLS+TG Y+ L+IATG
Sbjct: 63 PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
+ L+L +FGVEG+DA+N+ YLR++ DA++L I++ NG AVV+GGGYIG+E +A+L
Sbjct: 123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
IN I+V+MV+PE CM RLFT IA+ YE YY KG+K IKGTV F +++ +V V
Sbjct: 183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
LKDG L AD+VVVG+G RP SLF+GQ+ KGGI+ + ++S VYA+GDVATFP+
Sbjct: 243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302
Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG-YDYLPYFYSRAFDLSWQFYGDN 362
KL+ EMRR+EHVD ARKSA AV IM TG +DYLP+FYSR F SWQFYGD
Sbjct: 303 KLFGEMRRLEHVDSARKSARHAVSAIM----DPIKTGDFDYLPFFYSRVFAFSWQFYGDP 358
Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLD 421
GD V FG+ + + FG YW+K G +VG FLE GT EE + I+K +++P+V L+
Sbjct: 359 TGDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLE 415
Query: 422 VLKNEGLSFASKI 434
L+ EGL FA +
Sbjct: 416 ELEREGLGFAHTV 428
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 274/429 (63%), Gaps = 25/429 (5%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58
A ++ ++VI+GGG +AGYAAR F + G+ G L I++KEA APYERPAL+KAYLFP +
Sbjct: 56 FANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEK 115
Query: 59 GTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
ARLPGFH CVG GGER P+WYKEKGIE+I + AD +TL + G KY L
Sbjct: 116 KPARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSL 175
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
+IATG T R D G + Y+RE+ DAD L+ ++ K K V+VGGGYIG+E+
Sbjct: 176 IIATGCTASRFPD--KIGGHLPGVHYIREVADADSLIASLGKAK--KIVIVGGGYIGMEV 231
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
+AA N+D ++V+PE + RLFT +A YE Y G+K +KG +DG
Sbjct: 232 AAAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGR 291
Query: 239 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVG 296
V VKL DG T+EAD VV+G+G +P I F+ +A NK GGI+ D F+TS ++A+G
Sbjct: 292 VSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIG 350
Query: 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS- 355
DVA FP+K+Y M RVEHVDHAR+SA+ VK+++ YDYLPYFYSR F+
Sbjct: 351 DVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH----TDTYDYLPYFYSRVFEYEG 406
Query: 356 ------WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAK 409
WQF+GDNVG+TV G+ D K T+WI+ G++ GV +ESG+PEE + + K
Sbjct: 407 SPRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPK 461
Query: 410 VARVQPSVE 418
+AR QP V+
Sbjct: 462 LARSQPLVD 470
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P83966|MDARF_CUCSA Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/190 (60%), Positives = 128/190 (67%), Gaps = 48/190 (25%)
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVY 293
+AD V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK TS DVY
Sbjct: 23 DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVY 65
Query: 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFD 353
AVGDVAT+P+KLY E+RRVEHVDHAR S E+ YDYLPYFYSR F+
Sbjct: 66 AVGDVATYPLKLYNELRRVEHVDHARLSIEE----------------YDYLPYFYSRTFN 109
Query: 354 LSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV 413
L+WQFYGDNVG+TVLF DN FGTYWI KVVGVFLE GTP+E KVARV
Sbjct: 110 LAWQFYGDNVGETVLFPDN--------FGTYWI---KVVGVFLEGGTPDE----YKVARV 154
Query: 414 QPSVESLDVL 423
QP VESLD L
Sbjct: 155 QPPVESLDQL 164
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 175/405 (43%), Gaps = 32/405 (7%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
M + + VI+G G A + G G +AII E PYERP LSK YL E
Sbjct: 1 MTDTHYDVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYLAAE-- 57
Query: 61 ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
G ER+L ++ ++ I + L + R D + + A G Y
Sbjct: 58 -----------KGFERILIRPASFWNDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGD 106
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
LV G + RL G D + Y+R D D L + K V++GGGYIGLE
Sbjct: 107 LVWCAGGSARRLD---CTGHDLGGVHYVRTRADTDALAAELPGVS--KVVIIGGGYIGLE 161
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+A + +V+++ + R+ ++ F+E + ++G+ + + VG DG
Sbjct: 162 AAAVMAKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDV-RLRTKVGCLLGQDG 220
Query: 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
V V+L D + AD+V+VG+G P IS A+ G+ D +TS VYA+GD
Sbjct: 221 RVTHVELNDADPIPADLVIVGIGIIPAISPLVVAGAKASNGLLVDASGRTSIPHVYALGD 280
Query: 298 VATFPMKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS 355
A R+E V +A A +TI T Y +P+F+S +D+
Sbjct: 281 CAAHVNSFAPNDIPIRLESVQNANDQAVVVARTICG-----TAAQYHAVPWFWSSQYDIR 335
Query: 356 WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGT 400
Q G G F D AT F + +DG+V+ + + T
Sbjct: 336 LQTVGLTAGYDQTFVRGD--PATGSFTVVYGRDGRVIALDCVNAT 378
|
Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol. Sphingomonas sp (taxid: 28214) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | ||||||
| 224069008 | 434 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.857 | 0.0 | |
| 146432261 | 434 | monodehydroascorbate reductase [Vitis vi | 1.0 | 1.0 | 0.859 | 0.0 | |
| 225440936 | 434 | PREDICTED: monodehydroascorbate reductas | 1.0 | 1.0 | 0.857 | 0.0 | |
| 15865451 | 477 | monodehydroascorbate reductase [Mesembry | 1.0 | 0.909 | 0.834 | 0.0 | |
| 198400317 | 434 | monodehydroascorbate reductase [Camellia | 1.0 | 1.0 | 0.829 | 0.0 | |
| 50400860 | 433 | RecName: Full=Monodehydroascorbate reduc | 0.997 | 1.0 | 0.834 | 0.0 | |
| 132449587 | 434 | monodehydroascorbate reductase [Ipomoea | 1.0 | 1.0 | 0.824 | 0.0 | |
| 356577825 | 433 | PREDICTED: monodehydroascorbate reductas | 0.993 | 0.995 | 0.837 | 0.0 | |
| 356533631 | 433 | PREDICTED: monodehydroascorbate reductas | 0.993 | 0.995 | 0.839 | 0.0 | |
| 225380882 | 434 | monodehydroascorbate reductase [Malus x | 1.0 | 1.0 | 0.820 | 0.0 |
| >gi|224069008|ref|XP_002326252.1| predicted protein [Populus trichocarpa] gi|118481009|gb|ABK92458.1| unknown [Populus trichocarpa] gi|222833445|gb|EEE71922.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/434 (85%), Positives = 401/434 (92%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREF KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 1 MAEKSFKYVIIGGGVSAGYAAREFCKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+A+KTL+SA G IFKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLAAKTLVSAAGEIFKYHILII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV++LTDFGV+GADAKNI YLREIDDADKLVEAIK KKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIKLTDFGVQGADAKNILYLREIDDADKLVEAIKGKKNGKAVIVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
AL+INNIDV+MVYPEPWCMPRLFTA IAAFYEGYYANKG+KI+KGTVAVGF +++GEVK
Sbjct: 181 ALRINNIDVTMVYPEPWCMPRLFTAGIAAFYEGYYANKGVKIVKGTVAVGFNADSNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSISDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY ++RRVEHVDHARKSAEQAVK I + E GKT+ YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNDIRRVEHVDHARKSAEQAVKAIKSNEEGKTIDVYDYLPFFYSRSFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVGD VLFGDND AS KFG+YWIKDGKVVGVFLE GTP+ENKAIAKVARVQP VE+L
Sbjct: 361 DNVGDAVLFGDNDPASPKPKFGSYWIKDGKVVGVFLEGGTPDENKAIAKVARVQPPVENL 420
Query: 421 DVLKNEGLSFASKI 434
DVL EGLSFA KI
Sbjct: 421 DVLTKEGLSFACKI 434
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|146432261|gb|ABQ41114.1| monodehydroascorbate reductase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/434 (85%), Positives = 399/434 (91%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELIL TEIV+AD+ASKTL+SA G FKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILGTEIVKADLASKTLISAAGETFKYHILII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV+RLTDF VEGADAKNI YLREIDDADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREIDDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
+KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEVK
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGDN+ AS KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420
Query: 421 DVLKNEGLSFASKI 434
D L NEGL+FA KI
Sbjct: 421 DQLTNEGLTFACKI 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225440936|ref|XP_002283000.1| PREDICTED: monodehydroascorbate reductase [Vitis vinifera] gi|297740090|emb|CBI30272.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/434 (85%), Positives = 399/434 (91%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKHFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIV+AD+ASKTL+SA G FKY IL+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADLASKTLISAAGETFKYHILII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV+RLTDF VEGADAKNI YLREI+DADKL++ IKAKKNGKAV+VGGGYIGLELSA
Sbjct: 121 ATGSTVIRLTDFRVEGADAKNILYLREINDADKLIDVIKAKKNGKAVIVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
+KINN+DV MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT++A+GEVK
Sbjct: 181 VMKINNLDVCMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTSDANGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGI+TD+FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDEFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK+V YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQAVKAIKASEEGKSVEEYDYLPYFYSRAFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGDN+ AS KFGTYWIKDGKVVG FLE GTPEEN AIAKVAR+QP+VE+L
Sbjct: 361 DNVGETVLFGDNNPASPKAKFGTYWIKDGKVVGAFLEGGTPEENTAIAKVARLQPAVENL 420
Query: 421 DVLKNEGLSFASKI 434
D L EGL+FA KI
Sbjct: 421 DQLTKEGLTFACKI 434
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15865451|emb|CAC82727.1| monodehydroascorbate reductase [Mesembryanthemum crystallinum] | Back alignment and taxonomy information |
|---|
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/434 (83%), Positives = 398/434 (91%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK FKY+ LGGGVS GYAAREFAKQGV+PGELAIISKEAVAPYERPALSKAYLFPEGT
Sbjct: 44 MAEKHFKYIALGGGVSGGYAAREFAKQGVQPGELAIISKEAVAPYERPALSKAYLFPEGT 103
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERL+P+WYKEKGIELILSTEIV+AD++SK+L SA+G IFKY LVI
Sbjct: 104 ARLPGFHVCVGSGGERLVPDWYKEKGIELILSTEIVKADLSSKSLTSASGEIFKYDNLVI 163
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV++L+DFGV+GADAKNIFYLREIDDADKLVEAIK KKNGK V+VGGGYIGLELSA
Sbjct: 164 ATGSTVIKLSDFGVQGADAKNIFYLREIDDADKLVEAIKTKKNGKVVLVGGGYIGLELSA 223
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
A+++N++DV+MVYPEPWCMPRLFTADIA FYEGYY NKG+KIIKGTVA GF+++ +GEVK
Sbjct: 224 AMRVNDLDVTMVYPEPWCMPRLFTADIAKFYEGYYTNKGVKIIKGTVAAGFSSHDNGEVK 283
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EV+LKDGR L ADIVVVGVGGRPL +LFKGQVAE KGGI+TD FFKTS DVYAVGDVAT
Sbjct: 284 EVQLKDGRVLAADIVVVGVGGRPLTALFKGQVAEEKGGIKTDGFFKTSVPDVYAVGDVAT 343
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E+RRVEHVDHARKSAEQAVK I A+E GK V YDYLPYFYSRAFDLSWQFYG
Sbjct: 344 FPLKLYGELRRVEHVDHARKSAEQAVKAIKASEEGKAVEEYDYLPYFYSRAFDLSWQFYG 403
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVGD VLFGDND AS+ HKFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP +SL
Sbjct: 404 DNVGDAVLFGDNDPASSPHKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPADSL 463
Query: 421 DVLKNEGLSFASKI 434
+ L EGL+FASKI
Sbjct: 464 EQLSKEGLTFASKI 477
|
Source: Mesembryanthemum crystallinum Species: Mesembryanthemum crystallinum Genus: Mesembryanthemum Family: Aizoaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|198400317|gb|ACH87167.1| monodehydroascorbate reductase [Camellia sinensis] | Back alignment and taxonomy information |
|---|
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/434 (82%), Positives = 392/434 (90%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEK+FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE VAPYERPALSKAYLFPE
Sbjct: 1 MAEKTFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEGVAPYERPALSKAYLFPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWY +KGI LIL+TEIV+AD+A+KTL+SA G F Y L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYAQKGIALILNTEIVKADLATKTLVSAAGETFNYHFLII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGS+V+RLTDFGV+GADAKNI+YLREIDDADKLVEAI+ KKNGK V+VGGGYIGLELSA
Sbjct: 121 ATGSSVIRLTDFGVQGADAKNIYYLREIDDADKLVEAIQVKKNGKVVIVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
+K+NN+DV+MVYPEPWCMPRLFTA IAAFYEGYYANKGIKIIKGTVAVGFT +A+GEVK
Sbjct: 181 VMKLNNLDVNMVYPEPWCMPRLFTAGIAAFYEGYYANKGIKIIKGTVAVGFTADANGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVGGRPL +LFKGQV E KGGIETD FFKTSA VYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIETDSFFKTSAPHVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FPMK+Y EMRRVEHVDHARKSAE AVK I A+ GK++ YDYLP+FYSR+F+LSWQFYG
Sbjct: 301 FPMKIYNEMRRVEHVDHARKSAEHAVKAIFASTEGKSIEEYDYLPFFYSRSFNLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVGDTVLFGDN S KFG+YWIKDGKVVG FLESGTPEENKAIAKVARVQP VESL
Sbjct: 361 DNVGDTVLFGDNSPTSENPKFGSYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPVESL 420
Query: 421 DVLKNEGLSFASKI 434
D+L +GL+FA KI
Sbjct: 421 DLLAKDGLTFACKI 434
|
Source: Camellia sinensis Species: Camellia sinensis Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|50400860|sp|Q43497.1|MDAR_SOLLC RecName: Full=Monodehydroascorbate reductase; Short=MDAR; AltName: Full=Ascorbate free radical reductase; Short=AFR reductase gi|832876|gb|AAC41654.1| ascorbate free radical reductase [Solanum lycopersicum] gi|1097368|prf||2113407A ascorbate free radical reductase | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/434 (83%), Positives = 394/434 (90%), Gaps = 1/434 (0%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MAEKSFKYVI+GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG
Sbjct: 1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGER LPEWY EKGI LILSTEIV+AD+ASKTL+SA G FKYQ LVI
Sbjct: 61 ARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVI 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATG+TVL+L+DFGV+GAD+KNIFYLREIDDAD+LVEA+KAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
L++NNI+V+MVYPEPWCMPRLFT IAAFYEGYY NKG+ IIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR LEADIVVVGVG RPL +LFKGQV E KGGI+TD FFKTS DVYAVGDVAT
Sbjct: 241 EVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGD D SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP +L
Sbjct: 361 DNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TL 419
Query: 421 DVLKNEGLSFASKI 434
D L EG+SFASKI
Sbjct: 420 DQLAQEGISFASKI 433
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|132449587|gb|ABO33631.1| monodehydroascorbate reductase [Ipomoea batatas] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/434 (82%), Positives = 392/434 (90%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA KSFKYVILGG V+AGYAAREF+KQGVKPGELA+ISKEAVAPYERPALSK YLFPEG
Sbjct: 1 MAGKSFKYVILGGDVAAGYAAREFSKQGVKPGELALISKEAVAPYERPALSKGYLFPEGA 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLPEWY EKGI LILSTEIV AD+ASKTL+SA G FKY++L+I
Sbjct: 61 ARLPGFHVCVGSGGERLLPEWYTEKGISLILSTEIVEADVASKTLISAAGETFKYEVLII 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTVLRL+DFGV+GAD+KNIFYLREID+ADKLVEAIKAKKNGKAVVVGGGYIGLELSA
Sbjct: 121 ATGSTVLRLSDFGVQGADSKNIFYLREIDEADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
L++NNIDV+MV+PEPWCMPRLFTA IAAFYEGYY NKG+KIIKGTVAVGF T+ +GEVK
Sbjct: 181 VLRMNNIDVTMVFPEPWCMPRLFTASIAAFYEGYYENKGVKIIKGTVAVGFDTHPNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EVKLKDGR+LEADIVVVGVG +PL +LFKGQV E KGGI+TD FFKTS VYAVGDV T
Sbjct: 241 EVKLKDGRSLEADIVVVGVGAKPLTTLFKGQVEEEKGGIKTDAFFKTSVPGVYAVGDVVT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E RRVEHV+HARKSAEQAVK I A+E G ++ YDYLPYFYSRAFDLSWQFYG
Sbjct: 301 FPLKLYNEQRRVEHVEHARKSAEQAVKAIFASEKGTSIDEYDYLPYFYSRAFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGDND S THKFG YWI++GKVVG FLESGTPEENKAIAKVARVQP SL
Sbjct: 361 DNVGETVLFGDNDPKSPTHKFGQYWIQNGKVVGAFLESGTPEENKAIAKVARVQPPALSL 420
Query: 421 DVLKNEGLSFASKI 434
D + N+GL+FASKI
Sbjct: 421 DEMANQGLTFASKI 434
|
Source: Ipomoea batatas Species: Ipomoea batatas Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577825|ref|XP_003557022.1| PREDICTED: monodehydroascorbate reductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/431 (83%), Positives = 390/431 (90%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE ARL
Sbjct: 3 KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G F YQIL++ATG
Sbjct: 63 PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
STV+RLTDFGVEGADAKNIFYLRE+DDADKL EAIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYEAIKAKKNGKAVVVGGGYIGLELSAVLK 182
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
+NNIDV+MVYPEPWCMPRLFTA IA FYE YY NKG+ IIKGTVAVGFT+N+DGEVKEVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEEYYKNKGVNIIKGTVAVGFTSNSDGEVKEVK 242
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
LKDGR LEADIVVVGVGGRP +L KGQV E KGGI+TD FFKT+ DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTALVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302
Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
KLY E+RRVEHVDH+RKSAEQAVK I A E G+TV YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGRTVEEYDYLPYFYSRSFDLSWQFYGDNV 362
Query: 364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423
GDTVLFGDN+ AS+ KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V +D L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVDQL 422
Query: 424 KNEGLSFASKI 434
EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533631|ref|XP_003535365.1| PREDICTED: monodehydroascorbate reductase-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/431 (83%), Positives = 390/431 (90%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K+FKY+ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE ARL
Sbjct: 3 KTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
PGFHVCVGSGGERLLPEWY EKGIELILSTEIV+ D+A+K+L+SA G F YQIL++ATG
Sbjct: 63 PGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKVDLAAKSLISAGGETFSYQILIVATG 122
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
STV+RLTDFGVEGADAKNIFYLRE+DDADKL AIKAKKNGKAVVVGGGYIGLELSA LK
Sbjct: 123 STVIRLTDFGVEGADAKNIFYLREVDDADKLYAAIKAKKNGKAVVVGGGYIGLELSAVLK 182
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
+NNIDV+MVYPEPWCMPRLFTA IA FYEGYYANKG+ IIKGTVAVGFT+N+DGEVKEVK
Sbjct: 183 LNNIDVTMVYPEPWCMPRLFTAGIAEFYEGYYANKGVNIIKGTVAVGFTSNSDGEVKEVK 242
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
LKDGR LEADIVVVGVGGRP L KGQV E KGGI+TD FFKT+ DVYAVGDVATFP+
Sbjct: 243 LKDGRVLEADIVVVGVGGRPQTVLVKGQVEEEKGGIKTDAFFKTNLSDVYAVGDVATFPL 302
Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
KLY E+RRVEHVDH+RKSAEQAVK I A E GKTV YDYLPYFYSR+FDLSWQFYGDNV
Sbjct: 303 KLYGELRRVEHVDHSRKSAEQAVKAIKAAEEGKTVEEYDYLPYFYSRSFDLSWQFYGDNV 362
Query: 364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423
GDTVLFGDN+ AS+ KFGTYWIKDGKVVGVFLE GTPEEN+AIAKVA+VQP V ++ L
Sbjct: 363 GDTVLFGDNNPASSKPKFGTYWIKDGKVVGVFLEGGTPEENQAIAKVAKVQPPVADVNQL 422
Query: 424 KNEGLSFASKI 434
EGLSFASKI
Sbjct: 423 AKEGLSFASKI 433
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225380882|gb|ACN88682.1| monodehydroascorbate reductase [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/434 (82%), Positives = 391/434 (90%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
MA K+FKYVILGGGVSAGYAAREFAKQG+KPGELA+ISKEAVAPYERPALSKAYL PE
Sbjct: 1 MAAKNFKYVILGGGVSAGYAAREFAKQGLKPGELAVISKEAVAPYERPALSKAYLLPESP 60
Query: 61 ARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
ARLPGFHVCVGSGGERLLP+WYKEKGIELILSTEIV+AD+ KTL+S TG FKY+ LVI
Sbjct: 61 ARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVKADLPGKTLVSGTGESFKYETLVI 120
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGSTV+RL+DFGV+GADAKNIFYLREIDDADKL EAIKAKKNGKAV+VGGGYIGLEL A
Sbjct: 121 ATGSTVIRLSDFGVKGADAKNIFYLREIDDADKLNEAIKAKKNGKAVIVGGGYIGLELGA 180
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240
AL+INN+DV MVYPEPWCMPRLFT+DIAAFYEGYY NKG++IIKGTVA GFT +++GEVK
Sbjct: 181 ALRINNLDVKMVYPEPWCMPRLFTSDIAAFYEGYYKNKGVQIIKGTVATGFTADSNGEVK 240
Query: 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
EV LKDG LEADIVVVGVGGRPL +LFKGQV E KGGI+TD FFKTS +VYAVGDVAT
Sbjct: 241 EVHLKDGTVLEADIVVVGVGGRPLTTLFKGQVEEEKGGIKTDAFFKTSVPNVYAVGDVAT 300
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360
FP+KLY E+RRVEHVDHARKSAEQ+VK I A+E GKTV YDYLP+FYSR+FDLSWQFYG
Sbjct: 301 FPLKLYNEIRRVEHVDHARKSAEQSVKAIKASEEGKTVEEYDYLPFFYSRSFDLSWQFYG 360
Query: 361 DNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESL 420
DNVG+TVLFGD++ A+ KFG+YWIKDGKVVG FLE GTPEENKAIAKVA+ QP V SL
Sbjct: 361 DNVGETVLFGDSNPATPKAKFGSYWIKDGKVVGAFLEGGTPEENKAIAKVAKAQPPVASL 420
Query: 421 DVLKNEGLSFASKI 434
D L EGLSFASKI
Sbjct: 421 DQLATEGLSFASKI 434
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 434 | ||||||
| TAIR|locus:2085176 | 466 | MDAR1 "monodehydroascorbate re | 0.960 | 0.894 | 0.738 | 3.6e-174 | |
| TAIR|locus:2144588 | 435 | ATMDAR2 [Arabidopsis thaliana | 0.995 | 0.993 | 0.740 | 1.7e-171 | |
| TAIR|locus:2100143 | 441 | MDHAR "monodehydroascorbate re | 0.993 | 0.977 | 0.671 | 2.2e-153 | |
| TAIR|locus:2086430 | 488 | MDAR4 "monodehydroascorbate re | 0.979 | 0.870 | 0.530 | 4.9e-117 | |
| TAIR|locus:2195503 | 493 | MDAR6 "monodehydroascorbate re | 0.965 | 0.849 | 0.454 | 3.7e-96 | |
| UNIPROTKB|P95146 | 411 | Rv1869c "Probable reductase" [ | 0.822 | 0.868 | 0.285 | 3.7e-32 | |
| WB|WBGene00017640 | 549 | F20D6.11 [Caenorhabditis elega | 0.753 | 0.595 | 0.284 | 6.6e-30 | |
| UNIPROTKB|Q19655 | 549 | F20D6.11 "Protein F20D6.11" [C | 0.753 | 0.595 | 0.284 | 6.6e-30 | |
| TIGR_CMR|SPO_3737 | 403 | SPO_3737 "pyridine nucleotide- | 0.758 | 0.816 | 0.315 | 1.3e-29 | |
| POMBASE|SPAC26F1.14c | 611 | aif1 "apoptosis-inducing facto | 0.831 | 0.590 | 0.272 | 5e-29 |
| TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1632 (579.6 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 308/417 (73%), Positives = 358/417 (85%)
Query: 18 GYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERL 77
GYAA+EFA QGV+PGELA+ISKEAVAPYERPALSK YLFPEG ARLPGFH CVGSGGE+L
Sbjct: 50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFPEGAARLPGFHCCVGSGGEKL 109
Query: 78 LPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 137
LPE YK+KGIELILSTEIV+AD+++K+L+SATG +FKYQ L+IATGSTVLRLTDFGV+GA
Sbjct: 110 LPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVKGA 169
Query: 138 DAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPW 197
D+KNI YLREIDDADKLVE YIGLELSA L+INN+DV+MV+PEPW
Sbjct: 170 DSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPEPW 229
Query: 198 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257
CMPRLFTADIAAFYE YY NKG+KIIKGTVA GFT +GEVKEV+LKDGRTLEADIV+V
Sbjct: 230 CMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIV 289
Query: 258 GVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317
GVG +PL SLFKGQV E+KGGI+TD FFKTS DVYAVGDVATFP+K+Y ++RRVEHVDH
Sbjct: 290 GVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDH 349
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASA 377
+RKSAEQAVK I A EGG V YDYLP+FYSR+FDLSWQFYGDNVGD+VLFGD++ ++
Sbjct: 350 SRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNP 409
Query: 378 THKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 434
+FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESLD L +G+SFA+KI
Sbjct: 410 KPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 466
|
|
| TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
Identities = 320/432 (74%), Positives = 358/432 (82%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKSFKYVI+GGGV+AGYAAREF QGVKPGELAIIS+E V PYERPALSK Y+ E A
Sbjct: 4 EKSFKYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENKAT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
LP F+V G GGER P+WYKEKGIELIL TEIV+AD+A+KTL+S TG +FKYQ L+ AT
Sbjct: 64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAAL 182
GS+V+RL+DFGV GADAKNIFYLRE++DAD L YIGLEL AAL
Sbjct: 124 GSSVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAAL 183
Query: 183 KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
K NN+DV+MVYPEPWCMPRLFTA IA+FYEGYYANKGI I+KGTVA GFTTN++GEV EV
Sbjct: 184 KANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVTEV 243
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
KLKDGRTLEADIV+VGVGGRP+ISLFK QV E KGG++TD FFKTS DVYA+GDVATFP
Sbjct: 244 KLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
MKLY EMRRVEHVDHARKSAEQAVK I A E G ++ YDYLPYFYSRAFDLSWQFYGDN
Sbjct: 304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDN 363
Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDV 422
VG++VLFGDND S KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+V
Sbjct: 364 VGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEV 423
Query: 423 LKNEGLSFASKI 434
L EGLSFA+ I
Sbjct: 424 LSKEGLSFATNI 435
|
|
| TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
Identities = 290/432 (67%), Positives = 344/432 (79%)
Query: 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR 62
EKS+KYVI+GGGV+ GYAAREF+ QG+KPGELAIISKE V P+ERP L+K Y+ E
Sbjct: 4 EKSYKYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPT 63
Query: 63 LPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
L +VC G+G + P WYKEKGI+LI+ TEIV+AD+ASKTL+S G I+KYQ L+IAT
Sbjct: 64 LANIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIAT 123
Query: 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKL-VEXXXXXXXXXXXXXXXXYIGLELSAA 181
GST +RL++ GV+ AD KNIFYLREI+D+D+L + ++GLE+S+A
Sbjct: 124 GSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSA 183
Query: 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241
L+ NN +V+MV+PEPW + R FTA+IA+FYE YYANKGIKIIKGTVA GF+TN+DGEV E
Sbjct: 184 LRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGEVTE 243
Query: 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
VKL+DGRTLEA+IVV GVG RP SLFKGQ+ E KGGI+TD FFKTS DVYA+GDVATF
Sbjct: 244 VKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATF 303
Query: 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
PMK+Y RRVEH D+ARKSA QAVK I A E GKT+ YDYLPYFYSR F LSW+FYG+
Sbjct: 304 PMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGE 363
Query: 362 NVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421
NVG++VLFGDND S KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLD
Sbjct: 364 NVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLD 423
Query: 422 VLKNEGLSFASK 433
VL EGLSFA+K
Sbjct: 424 VLSEEGLSFATK 435
|
|
| TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
Identities = 229/432 (53%), Positives = 297/432 (68%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
++F YVILGGGV+AGYAA EF ++GV GEL IIS+E VAPYERPALSK +L PE ARL
Sbjct: 3 RAFVYVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLPEAPARL 62
Query: 64 PGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
P FH CVG+ E+L P+WYK+ GIEL+L T + D+ KTLLS+TG Y+ L+IATG
Sbjct: 63 PSFHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATG 122
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALK 183
+ L+L +FGVEG+DA+N+ YLR++ DA++L YIG+E +A+L
Sbjct: 123 ARALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLV 182
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
IN I+V+MV+PE CM RLFT IA+ YE YY KG+K IKGTV F +++ +V V
Sbjct: 183 INKINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIKGTVLTSFEFDSNKKVTAVN 242
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
LKDG L AD+VVVG+G RP SLF+GQ+ KGGI+ + ++S VYA+GDVATFP+
Sbjct: 243 LKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302
Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
KL+ EMRR+EHVD ARKSA AV IM + KT +DYLP+FYSR F SWQFYGD
Sbjct: 303 KLFGEMRRLEHVDSARKSARHAVSAIM--DPIKT-GDFDYLPFFYSRVFAFSWQFYGDPT 359
Query: 364 GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLDV 422
GD V FG+ + + FG YW+K G +VG FLE GT EE + I+K +++P+V L+
Sbjct: 360 GDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEE 416
Query: 423 LKNEGLSFASKI 434
L+ EGL FA +
Sbjct: 417 LEREGLGFAHTV 428
|
|
| TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
Identities = 202/444 (45%), Positives = 271/444 (61%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--EG 59
A ++ ++VI+GGG +AGYAAR F + G+ G L I++KEA APYERPAL+KAYLFP +
Sbjct: 57 ANENREFVIVGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKK 116
Query: 60 TARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 119
ARLPGFH CVG GGER P+WYKEKGIE+I + AD +TL + G KY L+
Sbjct: 117 PARLPGFHTCVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLI 176
Query: 120 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELS 179
IATG T R D G + Y+RE+ DAD L+ YIG+E++
Sbjct: 177 IATGCTASRFPD--KIGGHLPGVHYIREVADADSLI--ASLGKAKKIVIVGGGYIGMEVA 232
Query: 180 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239
AA N+D ++V+PE + RLFT +A YE Y G+K +KG +DG V
Sbjct: 233 AAAVAWNLDTTIVFPEDQLLQRLFTPSLAQKYEELYRQNGVKFVKGASINNLEAGSDGRV 292
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK--GGIETDDFFKTSADDVYAVGD 297
VKL DG T+EAD VV+G+G +P I F+ +A NK GGI+ D F+TS ++A+GD
Sbjct: 293 SAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGD 351
Query: 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS-- 355
VA FP+K+Y M RVEHVDHAR+SA+ VK+++ T T YDYLPYFYSR F+
Sbjct: 352 VAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH---TDT-YDYLPYFYSRVFEYEGS 407
Query: 356 -----WQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKV 410
WQF+GDNVG+TV G+ D K T+WI+ G++ GV +ESG+PEE + + K+
Sbjct: 408 PRKVWWQFFGDNVGETVEVGNFD-----PKIATFWIESGRLKGVLVESGSPEEFQLLPKL 462
Query: 411 ARVQPSVESLDVLKNEGLSFASKI 434
AR QP V+ + + A +I
Sbjct: 463 ARSQPLVDKAKLASASSVEEALEI 486
|
|
| UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 111/389 (28%), Positives = 181/389 (46%)
Query: 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLP 64
S +VI+GGG+ AG A E ++ G + + E PY+RP LSK +L G L
Sbjct: 4 STTFVIVGGGL-AGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKSLS 60
Query: 65 GFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
F + +WY++ +++ L + D ++ T+ G +Y L++ATGS
Sbjct: 61 DFTIQTS--------DWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGS 112
Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKI 184
R + G+DA + YLR +DA L +IGLE++A+ +
Sbjct: 113 APRRPP---IPGSDAAGVHYLRSYNDAVAL--NSVLVQGSSLAVVGAGWIGLEVAASARQ 167
Query: 185 NNIDVSMVYPEPWCMPRLFTAD--IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
+DV++V E P L + + + ++G+ + T T ADG+ +
Sbjct: 168 RGVDVTVV--ETAIQPLLAALGEAVGKVFADLHRDQGVDLRLQTQLEEITA-ADGKATGL 224
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
K++DG T+ AD V+V VG +P + L + +A +GG+ D +TS D+YAVGD+A
Sbjct: 225 KMRDGSTVAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAA 284
Query: 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361
L R EH +A K A ++ G Y LPY ++ +DL ++ G
Sbjct: 285 EHPLLGTRVRTEHWANALKQPAVAAAGMLGRPGE-----YAELPYLFTDQYDLGMEYVGH 339
Query: 362 NVG-DTVLFGDNDLASATHKFGTYWIKDG 389
D V+F N A +F ++W+ DG
Sbjct: 340 APSCDRVVFRGN---VAGREFLSFWL-DG 364
|
|
| WB|WBGene00017640 F20D6.11 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 6.6e-30, P = 6.6e-30
Identities = 100/351 (28%), Positives = 176/351 (50%)
Query: 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140
+Y+E+ ++ +L T ++ + S+ + + G Y L+IATG V +L V G+D K
Sbjct: 206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262
Query: 141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 200
NI YLR++++A+ + +IG+E+++AL V+++ P +P
Sbjct: 263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319
Query: 201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
+F +DI + KG+K V N GEV +V L++G+ L+ D++V G+G
Sbjct: 320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378
Query: 261 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 317
P +G +N+G IE D+ F+T+ ++A+GDV T P+ L+ + ++H
Sbjct: 379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 376
A+ + TI+ GK G +PYF++ F +F G N G T + + D +
Sbjct: 439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493
Query: 377 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 425
T F Y++K KVV V +G P + ++ A + + +E +L LKN
Sbjct: 494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538
|
|
| UNIPROTKB|Q19655 F20D6.11 "Protein F20D6.11" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 6.6e-30, P = 6.6e-30
Identities = 100/351 (28%), Positives = 176/351 (50%)
Query: 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140
+Y+E+ ++ +L T ++ + S+ + + G Y L+IATG V +L V G+D K
Sbjct: 206 FYEERNVKFLLKTSVIAVNHKSREVSLSNGETVVYSKLIIATGGNVRKLQ---VPGSDLK 262
Query: 141 NIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMP 200
NI YLR++++A+ + +IG+E+++AL V+++ P +P
Sbjct: 263 NICYLRKVEEANII---SNLHPGKHVVCVGSSFIGMEVASALAEKAASVTVISNTPEPLP 319
Query: 201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
+F +DI + KG+K V N GEV +V L++G+ L+ D++V G+G
Sbjct: 320 -VFGSDIGKGIRLKFEEKGVKFELAANVVALRGNDQGEVSKVILENGKELDVDLLVCGIG 378
Query: 261 GRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR-EMRRVEHVDH 317
P +G +N+G IE D+ F+T+ ++A+GDV T P+ L+ + ++H
Sbjct: 379 VTPATKFLEGSGIKLDNRGFIEVDEKFRTNISYIFAMGDVVTAPLPLWDIDSINIQHFQT 438
Query: 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLAS 376
A+ + TI+ GK G +PYF++ F +F G N G T + + D +
Sbjct: 439 AQAHGQHLGYTIV----GKPQPG-PIVPYFWTLFFFAFGLKFSGCNQGSTKEYTNGDPET 493
Query: 377 ATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARV-QPSVE-SLDVLKN 425
T F Y++K KVV V +G P + ++ A + + +E +L LKN
Sbjct: 494 GT--FIRYFLKKDKVVAV--AAGGP--SSVASQFAEIFKKGIEVTLKDLKN 538
|
|
| TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 117/371 (31%), Positives = 171/371 (46%)
Query: 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
++++ G AG + ++ GE+ +I E V PY+RP LSKAYL E
Sbjct: 3 HIVVIGAGQAGASLVARLRKDGFEGEITLIGAEPVPPYQRPPLSKAYLLGEMEK------ 56
Query: 68 VCVGSGGERLL--PE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
ERL PE +Y E+ I L L+ + D A+KT+ S G + Y L + TGS
Sbjct: 57 -------ERLFLRPESFYAEQNIALRLNARVSAIDPAAKTV-SLGGEVIPYDQLALTTGS 108
Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKI 184
RL G D + +R++ D D + YIGLE +A
Sbjct: 109 EPRRLP--AAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGG--YIGLEAAAVCAK 164
Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT--NADGEVKEV 242
+ V++V + R+ + +A++ + G+ I +G VG T A G V
Sbjct: 165 RGVQVTLVEMADRILQRVAAPETSAYFRALHTGHGVDIREG---VGLTRLIGAQGRVTGA 221
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
L DG L D+VVVGVG P +L + G V EN GI TD +TS ++A GD A+
Sbjct: 222 VLTDGSELPVDLVVVGVGIAPATALAEAAGLVLEN--GIRTDAQGRTSDPSIWAAGDCAS 279
Query: 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL--PYFYSRAFDLSWQF 358
FP K R R+E V +A AE + + +G G DY+ P+F+S +D+ Q
Sbjct: 280 FPYKGGRI--RLESVPNAIDQAETVAQNM---QGA----GKDYVAQPWFWSDQYDVKLQI 330
Query: 359 YGDNVG-DTVL 368
G N G D V+
Sbjct: 331 AGLNTGYDRVV 341
|
|
| POMBASE|SPAC26F1.14c aif1 "apoptosis-inducing factor homolog Aif1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 5.0e-29, P = 5.0e-29
Identities = 109/400 (27%), Positives = 184/400 (46%)
Query: 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC 69
I+GGG A AA ++ K G++ I ++E PY+RP LSK+ L L
Sbjct: 198 IIGGGKGASVAAEYLREKNFK-GKITIFTREDEVPYDRPKLSKSLLHDISKLALRS---- 252
Query: 70 VGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 127
E+Y + I +T++ + D+A K + + Y L++ATG
Sbjct: 253 ---------KEYYDDLDISFHFNTDVTKIDLAEKKIYCGSDEKPTESYTKLILATGGEPN 303
Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXX-XXYIGLELSAALKINN 186
+L + G D+KN++ LR I DA KL +IGLEL+ LK +N
Sbjct: 304 KLP---IPGLDSKNVYLLRSIADASKLAAVTTEAGDKKNIVIIGSSFIGLELAVVLKDHN 360
Query: 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI-IKGTVA-VGFTTNADGEVKEVKL 244
+ V + P+ ++ ++ + + GI ++ ++ V ++N + + + L
Sbjct: 361 VSVIGMESIPF--EKVMGKEVGTALKALHEQNGIAFYLENSIKEVKTSSNDSSKAEHIVL 418
Query: 245 KDGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKT-SADDVYAVGDVAT-- 300
KDG+++ AD+V++ G +P + V+ E GG++ D+ + A+DVYAVGD+A
Sbjct: 419 KDGQSIPADVVILAAGVKPNLRYLGNAVSLEKDGGVKVDEHCRVLGAEDVYAVGDIAHAP 478
Query: 301 ---FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT-VTGYDYLPYFYSRAFDLSW 356
P + R+EH D A A I+ G K T + PYF+S A
Sbjct: 479 FAGLPSSGEKSHTRIEHWDVAGNLGRVAADHILF--GNKAGYTTKSFTPYFWS-AQGKQL 535
Query: 357 QFYGDNVGDTVLFGDNDLASAT--HKFGTYWIKDGKVVGV 394
++ G+N + F D + + +KF ++ K KVVGV
Sbjct: 536 RYCGNNAAEG--FDDVVIQGSLSDYKFACFFTKGEKVVGV 573
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LFA3 | MDAR3_ARATH | 1, ., 6, ., 5, ., 4 | 0.7811 | 1.0 | 1.0 | yes | no |
| Q42711 | MDARS_CUCSA | 1, ., 6, ., 5, ., 4 | 0.8225 | 1.0 | 1.0 | N/A | no |
| Q93WJ8 | MDAR4_ARATH | 1, ., 6, ., 5, ., 4 | 0.7662 | 0.9953 | 0.9931 | no | no |
| Q40977 | MDAR_PEA | 1, ., 6, ., 5, ., 4 | 0.8116 | 0.9907 | 0.9930 | N/A | no |
| Q43497 | MDAR_SOLLC | 1, ., 6, ., 5, ., 4 | 0.8341 | 0.9976 | 1.0 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 434 | |||
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 3e-56 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 7e-43 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 2e-36 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 8e-36 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 6e-32 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 5e-27 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 1e-25 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 9e-22 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-20 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 8e-19 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-16 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 2e-16 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 5e-16 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 4e-15 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 1e-14 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 6e-14 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 3e-13 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 2e-12 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 4e-12 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-11 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 3e-11 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 4e-11 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 1e-10 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 2e-10 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 9e-10 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 2e-09 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 5e-09 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 2e-08 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 4e-08 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 1e-07 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 2e-07 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 2e-07 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 1e-06 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 2e-06 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 3e-06 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 4e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 8e-06 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 9e-06 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 1e-05 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 1e-05 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 1e-05 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 1e-05 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 5e-05 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 8e-05 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 2e-04 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 4e-04 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 4e-04 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 5e-04 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 0.001 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 0.001 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 0.001 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 0.001 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 0.001 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 0.003 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 0.003 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 3e-56
Identities = 101/302 (33%), Positives = 144/302 (47%), Gaps = 24/302 (7%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
VI+GGG AG AA + ++A+I +E Y R L K L
Sbjct: 1 DVVIIGGG-PAGLAAAIRLAR--LGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELA- 56
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATG 123
G L E YKE G+E++L TE+V D KT++ TG Y L+IATG
Sbjct: 57 ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
+ G+ G + LR + D+D+++E ++ K + VVVGGGYIGLEL+AAL
Sbjct: 111 ARPRIP---GIPGV---EVATLRGVIDSDEILELLELPK--RVVVVGGGYIGLELAAALA 162
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
+V++V + R AA E + + V V DG+V EVK
Sbjct: 163 KLGKEVTVVERRDRLLARADDEISAALLE-KLEKLLLGVTVLLVVVVVVKVGDGKVVEVK 221
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATF 301
L DG L+AD+V+V +G RP L + G + +G I D++ +TS +YA GDVA
Sbjct: 222 LGDGEELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEG 281
Query: 302 PM 303
Sbjct: 282 KP 283
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 7e-43
Identities = 108/397 (27%), Positives = 170/397 (42%), Gaps = 57/397 (14%)
Query: 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARL 63
K K VI+G G++ E + ++ + +E Y R LS L E TA
Sbjct: 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAGEKTA-- 58
Query: 64 PGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVI 120
E + +WY+E GI L ++++ D A+K + + G Y L+I
Sbjct: 59 -----------EDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLII 107
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATGS L + G+D +F R IDD + +++ + KK KAVV+GGG +GLE +
Sbjct: 108 ATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCARNKK--KAVVIGGGLLGLEAAR 162
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGE 238
LK ++V++V+ P M R + GIK++ K T + + +
Sbjct: 163 GLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIV----GEDK 218
Query: 239 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 298
V+ V+ DG + AD+VV+ VG RP L K GI +D+ +TS D+YAVG+
Sbjct: 219 VEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGEC 278
Query: 299 ATFPMKLY------REMRRV--EHVDHARKSAEQAVKT----------------IMATEG 334
A K+Y E +V +H+ A + T TEG
Sbjct: 279 AEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEG 338
Query: 335 GKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 371
+++ D Y + D + VL+GD
Sbjct: 339 AESIVFRDEQRGIYKKLV-----LKDDKIVGAVLYGD 370
|
Length = 793 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 2e-36
Identities = 97/392 (24%), Positives = 152/392 (38%), Gaps = 30/392 (7%)
Query: 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
VI+GGG AG +A ++ + E+ +I +E Y R LS +
Sbjct: 1 IVIVGGGA-AGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDL--- 56
Query: 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127
R P + + GI++ TE+ D +K +L G I Y LV+ATG+
Sbjct: 57 --------RYPPRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEIE-YDYLVLATGARPR 107
Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 187
+D + + LR +DA+ L + K VVVG G IGLE + A
Sbjct: 108 PP-----PISDWEGVVTLRLREDAEALKGGAEPPK--DVVVVGAGPIGLEAAEAAAKRGK 160
Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD 246
V+++ +L ++A G++++ GT VG + V+ V D
Sbjct: 161 KVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220
Query: 247 GRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKTSAD-DVYAVGDVATFP 302
G ++AD+V++G G RP + L +A G + D+ TS D DVYA GDVA P
Sbjct: 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280
Query: 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362
+ R+ A + I A + L S DL G
Sbjct: 281 AAETGKGGRIALWAIAVAAG-----RIAAENIAGALRIPGLLGTVISDVGDLCAASTGLT 335
Query: 363 VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
G + S + ++VG+
Sbjct: 336 EGKERGIDVVLVVSGGKDPRAHLYPGAELVGI 367
|
Length = 415 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-36
Identities = 101/375 (26%), Positives = 163/375 (43%), Gaps = 48/375 (12%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
M EK+ +I+GGG +A AA +QG GEL + S E PYERP LSK+ L +
Sbjct: 1 MKEKTI--IIVGGGQAAAMAAASLRQQGFT-GELHLFSDERHLPYERPPLSKSMLLEDSP 57
Query: 61 ARLPGFHVCVGSGGERLLPE-WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILV 119
+++LP W++E + L I ++ L+ G + + L
Sbjct: 58 QL------------QQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLF 105
Query: 120 IATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELS 179
IATG+ + A + F LR DA +L E ++ ++ V+VG G IGLEL+
Sbjct: 106 IATGAAARP---LPLLDALGERCFTLRHAGDAARLREVLQPER--SVVIVGAGTIGLELA 160
Query: 180 AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239
A+ V+++ M R + + + G++I+ DGE
Sbjct: 161 ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIE---HVVDGEK 217
Query: 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA-----ENKGGIETDDFFKTSADDVYA 294
E+ L+ G TL+AD+V+ G+G Q+A + GI D+ +T ++A
Sbjct: 218 VELTLQSGETLQADVVIYGIGIS-----ANDQLAREANLDTANGIVIDEACRTCDPAIFA 272
Query: 295 VGDVATFPMKLYRE----MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSR 350
GDVA + R + R E ++A A+ A ++ P+F+S
Sbjct: 273 GGDVA-----ITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPP-----PWFWSD 322
Query: 351 AFDLSWQFYGDNVGD 365
+ + QF GD GD
Sbjct: 323 QYSDNLQFIGDMRGD 337
|
Length = 396 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 6e-32
Identities = 97/391 (24%), Positives = 156/391 (39%), Gaps = 55/391 (14%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTAR---LPG 65
V++G G++ E K E+ I +E Y R LS L E L
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGEADLDDITLNS 60
Query: 66 FHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
+WY++ GI L +++ D K +++ G Y L++ATGS
Sbjct: 61 K-------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSY 107
Query: 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185
L + GAD K ++ R I+D D ++ A++ KA V+GGG +GLE + L+
Sbjct: 108 PFILP---IPGADKKGVYVFRTIEDLDAIMAM--AQRFKKAAVIGGGLLGLEAAVGLQNL 162
Query: 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245
+DVS+++ P M + + KG+ + V + ++ K
Sbjct: 163 GMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTV--EIVGATKADRIRFK 220
Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
DG +LEAD++V+ G RP L + GI +D +TS D+YAVG+ A ++
Sbjct: 221 DGSSLEADLIVMAAGIRPNDELAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECAEHNGRV 280
Query: 306 Y------REMRRVEHVDH----ARKSAEQAVKT---------------IMATEGGKTVTG 340
Y E +V DH + E + + TE ++
Sbjct: 281 YGLVAPLYEQAKVL-ADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKI 339
Query: 341 YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGD 371
YD Y + D + VLFGD
Sbjct: 340 YDEQKGIYKKLV-----LSDDKLLGAVLFGD 365
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 54/230 (23%), Positives = 114/230 (49%), Gaps = 18/230 (7%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFGV 134
+ K++GI++ + E++ + +T++ + T ++ Y L+++ G++ + +
Sbjct: 52 VFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVP---NI 108
Query: 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 194
EG + +F LR ++D D + + I K V++GGGYIG+E++ AL+ +V++++
Sbjct: 109 EGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHR 168
Query: 195 EPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEA 252
+ +LF ++ E I + + ++ +GE + G +A
Sbjct: 169 SERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSI------EGEERVKVFTSGGVYQA 222
Query: 253 DIVVVGVGGRPLISLFK-GQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
D+V++ G +P L K + G I ++ F+TS ++YA GDVA
Sbjct: 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAE 272
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
+I+ GG +AG +A AK+ K E+ + K + + G LP F
Sbjct: 3 IIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF-------------GACGLPYF-- 47
Query: 69 CVGS---GGERLL---PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIF--KYQI 117
VG ++ PE + + GI++ E+V+ D +KT+ TG IF Y
Sbjct: 48 -VGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDK 106
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
L+IATG+ R ++ + +N++ L+ ++D L E +K ++ V++G G+IGLE
Sbjct: 107 LMIATGA---RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLE 163
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
A K +V ++ E +P F +I E G+++ +
Sbjct: 164 AVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLI--GED 221
Query: 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAV 295
+V+ V D EAD+V+V G +P + + G I D++ +TS +++YA
Sbjct: 222 KVEGVV-TDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAA 280
Query: 296 GDVAT 300
GD AT
Sbjct: 281 GDCAT 285
|
Length = 444 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 9e-22
Identities = 84/369 (22%), Positives = 143/369 (38%), Gaps = 62/369 (16%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPALSKAYLFPEGTARLPGF 66
VILGGG AA+ A++ E+ ++ + + ++ E +P
Sbjct: 7 VILGGGFGGLSAAKRLARKLPDV-EITLVDRRDYHLFTPLLYEVA-TGTLSESEIAIP-- 62
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
L ++ G + E+ D +K + A Y LV+A GS
Sbjct: 63 -----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKL-------VEAIKAKKNGKA----VVVGGGYIG 175
FG+ GA A+ F L+ ++DA +L E +++ +A V+VGGG G
Sbjct: 112 ---NYFGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTG 167
Query: 176 LELSAAL-----------KINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIK 221
+EL+ L +++ ++ ++ E PR+ F ++ + E G++
Sbjct: 168 VELAGELAERLHRLLKKFRVDPSELRVILVEA--GPRILPMFPPKLSKYAERALEKLGVE 225
Query: 222 IIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVV--VGVGGRPLISLFKGQVAENKGG 278
++ GT V T + V LKDG + AD VV GV PL+ G + +G
Sbjct: 226 VLLGT-PV---TEVTPDG--VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGR 279
Query: 279 IETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 337
+ + + D++A GD A A + E A K I A GK
Sbjct: 280 LVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPT----AQAAHQQGEYAAKNIKARLKGKP 335
Query: 338 VTGYDYLPY 346
+ + Y
Sbjct: 336 LKPFKYKDK 344
|
Length = 405 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 1e-20
Identities = 87/359 (24%), Positives = 133/359 (37%), Gaps = 81/359 (22%)
Query: 3 EKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL----------- 50
K + V++G G AGY AA A+ G+K +A++ K L
Sbjct: 2 MKEYDVVVIGAG-PAGYVAAIRAAQLGLK---VALVEK-------GERLGGTCLNVGCIP 50
Query: 51 SKAYLFP-------EGTARLPGFHVCV-------------------GSGGERLLPEWYKE 84
SKA L A+ G V G E LL K+
Sbjct: 51 SKALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLL----KK 106
Query: 85 KGIELILST-EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF 143
G+++I V T + ++IATGS G++GA I
Sbjct: 107 NGVDVIRGEARFVDPHTVEVTGEDKETITADN--IIIATGSRPRIPPGPGIDGA---RIL 161
Query: 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
+ +L +++ V+VGGGYIGLE ++ V++V +P
Sbjct: 162 DSSDALFLLELPKSL--------VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-E 212
Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263
+I+ G+KI+ T DG + ++ +G T+EAD V+V +G +P
Sbjct: 213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272
Query: 264 LISLFKGQVAEN-------KGGIETDDFFKTSADDVYAVGDVATFPM---KLYREMRRV 312
G EN +G I+ DD T+ +YA+GDV PM E R
Sbjct: 273 NT---DGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIA 328
|
Length = 454 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 8e-19
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
L+IATGS + L +G Y+ D+A L K V+VGGG IGLE
Sbjct: 146 LLIATGSRPVELPGLPFDGE------YVISSDEALSLETLPK-----SLVIVGGGVIGLE 194
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
++ L ++V++V +P A+++ G++++ G +G T DG
Sbjct: 195 WASMLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDG 253
Query: 238 EVKEVKLKDGR--TLEADIVVVGVGGRPL---ISLFKGQVAENKGGIETDDFFKTSADDV 292
V V +G TLEAD V+V VG RP I L + G I+ DDF +T +
Sbjct: 254 GVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHI 313
Query: 293 YAVGDVATFPMKLYREMRR----VEHV 315
YA+GDV P + M EH+
Sbjct: 314 YAIGDVIGEPQLAHVAMAEGEMAAEHI 340
|
Length = 472 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-16
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 7/230 (3%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138
+Y++ GI++++ + + K + S+ G Y L++ATGS ++G++
Sbjct: 66 EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSE 122
Query: 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198
++ F R I+D +EA A+++ + VVGGG +GLE + ALK ++ ++ P
Sbjct: 123 TQDCFVYRTIEDL-NAIEAC-ARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180
Query: 199 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258
M + G+++ + K ++ DG LE D +V
Sbjct: 181 MAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFS 240
Query: 259 VGGRPLISLFK--GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
G RP L G +GGI +D +TS D+YA+G+ A++ +++
Sbjct: 241 TGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290
|
Length = 847 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 23/194 (11%)
Query: 118 LVIATGSTVLRLT-DFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
++IATGS L F +G + L E+ + V++GGG
Sbjct: 135 IIIATGSRPRSLPGPFDFDGKVVITSTGALNLEEVPE--------------SLVIIGGGV 180
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
IG+E ++ V+++ +P A+++ + KG+KI+ T
Sbjct: 181 IGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKILTNTKVTAVEK 239
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSA 289
N D E K + TL + V+V VG +P G + +G I D++ +T+
Sbjct: 240 NDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTNV 299
Query: 290 DDVYAVGDVATFPM 303
+YA+GDV PM
Sbjct: 300 PGIYAIGDVIGGPM 313
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 5e-16
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+++ATGS L ++G + I+ E + D++ + VV+GGGYIG+E
Sbjct: 138 IILATGSRPRELPGIEIDG---RVIWTSDEALNLDEVPK--------SLVVIGGGYIGVE 186
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
++A +V++V P +P +I+ E +GIKI G A DG
Sbjct: 187 FASAYASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDG 245
Query: 238 EVKEVKLKDG---RTLEADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADD 291
V V L+DG TLEAD V+V VG RP L + V ++G IE D+ +T+ +
Sbjct: 246 -V-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPN 303
Query: 292 VYAVGDVATFPM 303
+YA+GD+ PM
Sbjct: 304 IYAIGDIVGGPM 315
|
Length = 462 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-15
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+VIATGS V + GV + + + DKL +++ V+GGG IGLE
Sbjct: 134 IVIATGSRVPPIP--GVWLILGDRLLTSDDAFELDKLPKSL--------AVIGGGVIGLE 183
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
L AL + V++ +P L +++ + + K KI G + D
Sbjct: 184 LGQALSRLGVKVTVFERGDRILP-LEDPEVSKQAQKILS-KEFKIKLGAKVTSVEKSGDE 241
Query: 238 EVKEVKLKDG-RTLEADIVVVGVGGRPLI---SLFKGQVA-ENKGGIETDDFFKTSADDV 292
+V+E++ T+EAD V+V G RP L + + +G D+ +TS +
Sbjct: 242 KVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301
Query: 293 YAVGDVATFPM 303
YA GDV P
Sbjct: 302 YAAGDVNGKPP 312
|
Length = 460 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-14
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
+ VVVGGGYIGLE ++AL V++V + F +IA + GI+++
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLR-GFDEEIAKILQEKLEKNGIEVLL 59
Query: 225 GTVAVGFTTNADGEVKEVKLKDG 247
T N DG V ++K DG
Sbjct: 60 NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 6e-14
Identities = 52/187 (27%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 119 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+IATG G E G + F L E+ + VVG GYI +E
Sbjct: 136 LIATGGRPSIPDIPGAEYGITSDGFFALEELPK--------------RVAVVGAGYIAVE 181
Query: 178 LSAALKINNIDVSMVY--PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
+ L + + P R F DI KGI++ V NA
Sbjct: 182 FAGVLNGLGSETHLFVRGDAPL---RGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238
Query: 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTSADD 291
DG + + L+DG TL D ++ +G P + L V N+ G I D++ T+
Sbjct: 239 DGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPG 297
Query: 292 VYAVGDV 298
+YAVGDV
Sbjct: 298 IYAVGDV 304
|
Length = 450 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 66/254 (25%), Positives = 112/254 (44%), Gaps = 46/254 (18%)
Query: 79 PEWYKE-KGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
PE + + K I + E++ + +T+ T F+ Y L+++ G++ L
Sbjct: 64 PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL--- 120
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
G ++ F LR ++D D + + IKA + KA+VVG GYI LE+ L + +++
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLI 177
Query: 193 YPEPWCMPRLFTADI--AAFYE------GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244
+ + +L AD+ E Y N+ I I G EV
Sbjct: 178 HRSDK-INKLMDADMNQPILDELDKREIPYRLNEEIDAING--------------NEVTF 222
Query: 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVATFP 302
K G+ D+++ GVG P + + +KG I +D F+T+ ++YA+GD+ T
Sbjct: 223 KSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIIT-- 280
Query: 303 MKLYREMRRVEHVD 316
YR HVD
Sbjct: 281 -SHYR------HVD 287
|
Length = 438 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 26/224 (11%)
Query: 100 IASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE-IDDADKLVEAI 158
I KTL + G +VIA GS R V AD+ ++ + I +L E++
Sbjct: 114 IGPKTLRTGDGEEITADQVVIAAGS---RPVIPPVI-ADSGVRYHTSDTIMRLPELPESL 169
Query: 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA-FYEGYYAN 217
V+VGGG+I E + + V++V + R DI+ F E A+
Sbjct: 170 --------VIVGGGFIAAEFAHVFSALGVRVTVVNRSG-RLLRHLDDDISERFTE--LAS 218
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAE 274
K + G VG + + G ++L DG T+EAD+++V G P L+ V
Sbjct: 219 KRWDVRLGRNVVGVSQDGSG--VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDV 276
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVAT-FPMK--LYREMRRVEH 314
++ G + D++ +TSA+ V+A+GDV++ + +K E R V+H
Sbjct: 277 DEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQH 320
|
Length = 451 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV 227
VVGGG IG EL+ L V++V + L ++++ + G+ ++ +
Sbjct: 146 VVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQ 205
Query: 228 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT 287
G G L GR++E D V+ G RP +L + GI D + +T
Sbjct: 206 LQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNRGIVVDSYLQT 263
Query: 288 SADDVYAVGDVA 299
SA D+YA+GD A
Sbjct: 264 SAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 100 IASKTLLSATGLIFKYQILVIATGSTVL---RLTDFGVEGADAKNIFYLREIDDADKLVE 156
+ +TL + G +VIA GS + D GV ++I L E L E
Sbjct: 117 VGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPE------LPE 170
Query: 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216
++ V+VGGGYI E + V++V + R DI+ + A
Sbjct: 171 SL--------VIVGGGYIAAEFAHVFSALGTRVTIVNRST-KLLRHLDEDISDRFTEI-A 220
Query: 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA 273
K I G + DG + L DG T+ AD+++V G P L+ V
Sbjct: 221 KKKWDIRLGRNVTAVEQDGDGVT--LTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVE 278
Query: 274 ENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR----EMRRVEH 314
++ G I+ D++ +TSA V+A+GDV++ P +L E R V+H
Sbjct: 279 VDEDGRIKVDEYGRTSARGVWALGDVSS-PYQLKHVANAEARVVKH 323
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+IATGS+ L G ++ N+ E + +L ++I V+ G G IG+E
Sbjct: 139 AIIATGSSTRLLP--GTSLSE--NVVTYEEQILSRELPKSI--------VIAGAGAIGME 186
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+ LK +DV++V +P A+++ Y G+KI+ GT N
Sbjct: 187 FAYVLKNYGVDVTIVEFLDRALP-NEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSK 245
Query: 238 EVKEVKLKDGR--TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 291
V KDG+ LEAD V+ +G P + L K VA ++G I DD+ +T+
Sbjct: 246 VTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPH 305
Query: 292 VYAVGDV 298
+YA+GDV
Sbjct: 306 IYAIGDV 312
|
Length = 466 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 71/323 (21%), Positives = 126/323 (39%), Gaps = 38/323 (11%)
Query: 6 FKYVILGGGVSAGYAAREFAKQGVKPG--ELAII-----------SKEAVAPYERPALSK 52
+ VI+G G +A AA + A+ G E + SK + E ++
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYAR 60
Query: 53 AYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILST--EIVR--ADIASKTLLSA 108
F A + + G ++ E EK +++ S + +R A +
Sbjct: 61 KPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKV 120
Query: 109 TGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA 166
+ + +IATG+ I L+E EA+ + ++
Sbjct: 121 DLGREVRGAKRFLIATGAR-----------PAIPPIPGLKEAGYLTS-EEALALDRIPES 168
Query: 167 VVV-GGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225
+ V GGG IG+EL+ A +V+++ +PR +I+A E A +GI+++
Sbjct: 169 LAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTS 227
Query: 226 TVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIE 280
+ G++ V+ G +EAD ++V G RP + A + +GGI
Sbjct: 228 AQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287
Query: 281 TDDFFKTSADDVYAVGDVATFPM 303
D+ +TS +YA GDV
Sbjct: 288 VDETLRTSNPGIYAAGDVTGGLQ 310
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 36/215 (16%)
Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDA----DKLVEAIKAKKNGKA--- 166
Y LV+A G+ R F + G + + F+L+E++ A ++V+ I+
Sbjct: 113 PYDKLVVAHGA---RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVE 168
Query: 167 --------VVVGGGYIGLELSAAL-KINNIDVSMVYPE--PWCMPRLFTA--DIAAFYEG 213
VVVGGG G+E +A L DV + PE C + A ++ ++
Sbjct: 169 ERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQ 228
Query: 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVK-----LKDGRTLEADIVV--VGVGGRPLIS 266
G + ++ +G VKEV LKDG + +VV GVG PL
Sbjct: 229 ALRKYGQRRLR---RLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTK 285
Query: 267 LFKGQVAENKGGIETDDFFKTS-ADDVYAVGDVAT 300
K ++G I DD + +V+A+GD A
Sbjct: 286 QLKVD-KTSRGRISVDDHLRVKPIPNVFALGDCAA 319
|
Length = 424 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226
V++GGGYIGLE + + +V+++ P +PR D+AA +GI +
Sbjct: 175 VIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNA 233
Query: 227 VAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIET 281
+ + DG + G + ++V VG P L V + +G I+
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 282 DDFFKTSADDVYAVGDV 298
DD +T+ +YA GD
Sbjct: 294 DDQLRTTNPGIYAAGDC 310
|
Length = 463 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 9e-10
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 40/258 (15%)
Query: 95 IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 154
+V+A+ S+T L A + +VIATGS L GV D + I ID L
Sbjct: 124 VVKAEDGSETQLEA-------KDIVIATGSEPTPLP--GVT-IDNQRI-----IDSTGAL 168
Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV-YPEPWCMPRLFTADIAAFYEG 213
K VV+G G IGLEL + + V++V Y + C P T + A +
Sbjct: 169 SLPEVPKH---LVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC-PGTDT-ETAKTLQK 223
Query: 214 YYANKGIKIIKGTVAVGFTTNADG---EVKEVKLKDGRTLEADIVVVGVGGRPL---ISL 267
+G+K G+ G T ADG ++ TL+AD V+V +G RP + L
Sbjct: 224 ALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGL 283
Query: 268 FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 327
+ +K G+ +D +TS V+ +GDV + PM A K+ ++AV
Sbjct: 284 ETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPML-------------AHKAEDEAVA 330
Query: 328 TIMATEGGKTVTGYDYLP 345
I G Y +P
Sbjct: 331 CIERIAGKAGEVNYGLIP 348
|
Length = 466 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225
++ GGGYI +E + + + +++Y + R F D+ +GI+I+
Sbjct: 169 ILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEIL-RGFDDDMRRGLAAALEERGIRILPE 227
Query: 226 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAEN-KGGIET 281
+ + DG +K L + AD+V+ G P + L V N G I
Sbjct: 228 DSITSISKDDDGRLK-ATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAV 286
Query: 282 DDFFKTSADDVYAVGDV 298
D++ +TS +YAVGDV
Sbjct: 287 DEYSRTSTPSIYAVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 73/316 (23%), Positives = 121/316 (38%), Gaps = 60/316 (18%)
Query: 9 VILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPY-ERPALSKAYL-FPEGTARLPG 65
+I+GGG AG AA A+ G+K + I+ + + Y FP G
Sbjct: 7 IIIGGG-PAGLTAAIYAARAGLKV--VLILEGGEPGGQLTKTTDVENYPGFPGGIL---- 59
Query: 66 FHVCVGSGGERLLPEWYKEK---GIELILST-EIVRADIASKTLLSATGLIF-KYQILVI 120
G L+ + ++ G+E++ E V + + + G K ++I
Sbjct: 60 --------GPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKA--VII 109
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
ATG+ +L G E + K + Y D K VV+GGG +E +
Sbjct: 110 ATGAGARKLGVPGEEEFEGKGVSYCATCDGFFK---------GKDVVVIGGGDSAVEEAL 160
Query: 181 ALKINNIDVSMVY------PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
L V++V+ E + RL N I+++ TV +
Sbjct: 161 YLSKIAKKVTLVHRRDEFRAEEILVERLK------------KNVKIEVLTNTVVKEILGD 208
Query: 235 ADGEVKEVKLKDGR----TLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSA 289
+V+ V LK+ + L D V + +G P L KG ++ G I D+ +TS
Sbjct: 209 ---DVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSV 265
Query: 290 DDVYAVGDVATFPMKL 305
++A GDVA +
Sbjct: 266 PGIFAAGDVADKNGRQ 281
|
Length = 305 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 52/189 (27%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKN-IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
+++ATGS L G+E + N FYL D+ + + + VGGG+I +
Sbjct: 155 ILLATGSWPQMLGIPGIEHCISSNEAFYL---DEPPR-----------RVLTVGGGFISV 200
Query: 177 ELSA---ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
E + A K V++ Y + R F + + GI I+ T
Sbjct: 201 EFAGIFNAYKPRGGKVTLCYRNNMIL-RGFDSTLRKELTKQLRANGINIMTNENPAKVTL 259
Query: 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA----ENKGGIETDDFFKTSA 289
NADG K V + G+TL+ D+V++ +G P + KG I+ D+F +T+
Sbjct: 260 NADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNV 318
Query: 290 DDVYAVGDV 298
++YA+GDV
Sbjct: 319 PNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 39/224 (17%)
Query: 93 TEIVRADIAS-------KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNI 142
EI+ ++ + + G + + ++IATG++ +L G+ G D + +
Sbjct: 71 AEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKL---GIPGEDEFWGRGV 127
Query: 143 FYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP 200
Y D KN + VVGGG +E AL + I V++V+
Sbjct: 128 SYCATCDGP--------FFKNKEVAVVGGGDSAIE--EALYLTRIAKKVTLVHRRD---- 173
Query: 201 RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIV 255
F A+ + N I+ + + D +V+ VK+K+ LE D V
Sbjct: 174 -KFRAE-KILLDRLKKNPKIEFLWNSTVKEIV--GDNKVEGVKIKNTVTGEEEELEVDGV 229
Query: 256 VVGVGGRPLISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 298
+ +G P L KG + ++ G I TD+ +TS V+A GDV
Sbjct: 230 FIAIGHEPNTELLKGLLELDENGYIVTDEGMRTSVPGVFAAGDV 273
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 23/154 (14%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYANKGI 220
K V+G G IGLEL + + +V+++ +P A +A + +G+
Sbjct: 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILE----ALPAFLAAADEQVAKEAAKAFTKQGL 239
Query: 221 KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAEN- 275
I G V +G V V D +TLE D ++V +G P G E
Sbjct: 240 DIHLG-VKIGEIKTGGKGVS-VAYTDADGEAQTLEVDKLIVSIGRVPNT---DGLGLEAV 294
Query: 276 ------KGGIETDDFFKTSADDVYAVGDVATFPM 303
+G I DD +T+ +VYA+GDV PM
Sbjct: 295 GLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 52/239 (21%), Positives = 89/239 (37%), Gaps = 38/239 (15%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
++ G +++ E D + +L A Y +L + GST G A
Sbjct: 65 RQAGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEG----AADLA 119
Query: 143 FYLREIDDADKLVEAIKAK---KNGKA--VVVGGGYIGLELSAAL-----------KINN 186
++ I++ EA+ G VVGGG G+E++ AL ++
Sbjct: 120 VPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTL 179
Query: 187 IDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245
I + + P P + RL +A +GI++ G + L
Sbjct: 180 IAGASLLPGFPAKVRRLVLRLLAR--------RGIEVH------EGAPVTRGPDGALILA 225
Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVA-ENKGGIETDDFFKTSAD-DVYAVGDVATFP 302
DGRTL AD ++ G R L + + + G + D ++ + V+A GD A
Sbjct: 226 DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVIT 284
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 22/209 (10%)
Query: 95 IVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL 154
IV + T L T L + + ++IATGS R G E A D+A L
Sbjct: 148 IVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKELAITS--------DEALSL 199
Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEG 213
E K +AVV+GGGYI +E ++ + V + + + +P R F ++ A
Sbjct: 200 EELPK-----RAVVLGGGYIAVEFASIWRGMGATVDLFFRKE--LPLRGFDDEMRAVVAR 252
Query: 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVA 273
+GI + T T G +V G AD+V+ G P +
Sbjct: 253 NLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAV 310
Query: 274 ----ENKGGIETDDFFKTSADDVYAVGDV 298
+ G ++ D++ +T+ ++A+GDV
Sbjct: 311 GVELDKAGAVKVDEYSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 55/213 (25%), Positives = 79/213 (37%), Gaps = 22/213 (10%)
Query: 94 EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153
E V T I+ + +IATG R G+ GA I DD
Sbjct: 123 EFVDKHRIKATNKKGKEKIYSAERFLIATG---ERPRYPGIPGAKELCI----TSDDLFS 175
Query: 154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS-MVYPEPWCMPRLFTADIAAFYE 212
L GK +VVG Y+ LE + L +DV+ MV R F D A
Sbjct: 176 L-----PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL---RGFDQDCANKVG 227
Query: 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPL---ISLF 268
+ G+K + V + + E G E D V++ +G ++L
Sbjct: 228 EHMEEHGVKFKRQFVPIKVEQIEAKVLVEFTDSTNGIEEEYDTVLLAIGRDACTRKLNLE 287
Query: 269 KGQVAENK--GGIETDDFFKTSADDVYAVGDVA 299
V NK G I D+ +T+ +YAVGD+
Sbjct: 288 NVGVKINKKTGKIPADEEEQTNVPYIYAVGDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 54/250 (21%), Positives = 99/250 (39%), Gaps = 48/250 (19%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
E + G+E+ +TE+ R ++ L Y + I TG+ + R G+ G +
Sbjct: 198 ERLLKLGVEIRTNTEVGRD-------ITLDELRAGYDAVFIGTGAGLPR--FLGIPGENL 248
Query: 140 KNIF----YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYP 194
++ +L ++ A + K+ VV+GGG ++ A ++ V++VY
Sbjct: 249 GGVYSAVDFLTRVNQAVADYDLPVGKR---VVVIGGGNTAMDAARTAKRLGAESVTIVY- 304
Query: 195 EPWCMPRLFTADI-AAFYEGYYA-NKGIKIIKGTVAVGFTTNADG----EVKEVKLKDGR 248
R ++ A+ E +A +G++ V + E ++L +
Sbjct: 305 ------RRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPD 358
Query: 249 --------------TLEADIVVVGVGGRP---LISLFKGQVAENKGGIETDDF-FKTSAD 290
TL AD+V+ +G P ++S G G I DD +TS
Sbjct: 359 ASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLP 418
Query: 291 DVYAVGDVAT 300
V+A GD+ T
Sbjct: 419 GVFAGGDIVT 428
|
Length = 457 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 118 LVIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 175
++IATG + G E G D+ F L E+ + V+VG GYI
Sbjct: 133 ILIATGGKPSFPENIPGAELGTDSDGFFALEELP--------------KRVVIVGAGYIA 178
Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
+EL+ L + +V + R F + I+ Y +GI + K + V
Sbjct: 179 VELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237
Query: 236 DGEVKEVKLKDGRTL-EADIVVVGVGGRPL---ISLFKGQVAEN-KGGIETDDFFKTSAD 290
+G++ + +DG+++ + D ++ +G +P + L + N KG I D++ T+
Sbjct: 238 EGKLV-IHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVP 296
Query: 291 DVYAVGDV 298
+YA+GDV
Sbjct: 297 GIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226
++VGGG IG E ++ V++V P +P DIA N G+KI G
Sbjct: 174 LIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLENDGVKIFTGA 232
Query: 227 VAVGFTTNADGEVKEVKLK-DGRTLE--ADIVVVGVGGRPL---ISLFKGQVAENKGGIE 280
G + K+ + +G E A+ V+V VG +P ++L K V + GI
Sbjct: 233 ALKGL----NSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGIS 288
Query: 281 TDDFFKTSADDVYAVGDVA 299
++ +T+ +YA GDV
Sbjct: 289 VNEHMQTNVPHIYACGDVI 307
|
Length = 458 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 8e-06
Identities = 68/298 (22%), Positives = 112/298 (37%), Gaps = 94/298 (31%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
E + +GIE + E+ + DI ++ LL+ +Y + + TG+ R D G+ G D
Sbjct: 201 ELMEAEGIEFRTNVEVGK-DITAEELLA------EYDAVFLGTGAYKPR--DLGIPGRDL 251
Query: 140 KNIF----YLREI---DDADKLVEAIKAKKNGKAVVV-GGGYIG-------LELSAA--- 181
+ +L + D+ I AK GK VVV GGG G + A
Sbjct: 252 DGVHFAMDFLIQNTRRVLGDETEPFISAK--GKHVVVIGGGDTGMDCVGTAIRQGAKSVT 309
Query: 182 -LKINNI-----DVSMVYPEPWCM------------PRLFTADIAAFYEGYYANKGIKII 223
I + + + +P W M R F F G+K++
Sbjct: 310 QRDIMPMPPSRRNKNNPWPY-WPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVV 368
Query: 224 KGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE--NKGGI 279
+ +G +G+ + V +G L AD+V++ +G F G A + G+
Sbjct: 369 R--TELG-----EGDFEPV---EGSEFVLPADLVLLAMG-------FTGPEAGLLAQFGV 411
Query: 280 ETDD---------FFKTSADDVYAVGDVATFPMKLYREMRR-----VEHVDHARKSAE 323
E D+ ++TS V+A GD MRR V + R++A
Sbjct: 412 ELDERGRVAAPDNAYQTSNPKVFAAGD-----------MRRGQSLVVWAIAEGRQAAR 458
|
Length = 471 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+VI TG+ L G+ AD+K+++ I + L E + ++GGG IGLE
Sbjct: 122 IVINTGAVSNVLPIPGL--ADSKHVYDSTGIQSLETLPE--------RLGIIGGGNIGLE 171
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+ V+++ +PR +AA + Y GI + N
Sbjct: 172 FAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLN-AHTTEVKNDGD 229
Query: 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSAD 290
+V + + + T D ++ G +P EN +G I+ DD+ +TS
Sbjct: 230 QV--LVVTEDETYRFDALLYATGRKPNTE---PLGLENTDIELTERGAIKVDDYCQTSVP 284
Query: 291 DVYAVGDV 298
V+AVGDV
Sbjct: 285 GVFAVGDV 292
|
Length = 438 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 52/224 (23%), Positives = 87/224 (38%), Gaps = 48/224 (21%)
Query: 94 EIVRADIASKTLLSATGLIFKYQILVIATGSTVLR--LTDFGVEGADAKNIFYLREIDDA 151
E+ D L+A +VIATGS R DF D I+ D+
Sbjct: 125 EVECPD-GEVETLTAD-------KIVIATGSRPYRPPDVDF-----DHPRIY------DS 165
Query: 152 DKLVEAIKAKKNGKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIA 208
D ++ + ++ G G IG E + AAL + V+++ + L
Sbjct: 166 DSILSLDHLPR--SLIIYGAGVIGCEYASIFAAL---GVKVTLINTRDRLLSFLDDEISD 220
Query: 209 AFYEGYYA--NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG------ 260
A Y + G+ I DG + V LK G+ ++AD ++ G
Sbjct: 221 ALS---YHLRDSGVTIRHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTGNTD 275
Query: 261 --GRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302
L A+++G ++ ++ ++T+ +YAVGDV FP
Sbjct: 276 GLNLENAGL----EADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315
|
Length = 461 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 56/258 (21%)
Query: 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFY 144
+GI+ + +TEI DI++ L ++ +V+A G+T R D + G + K I Y
Sbjct: 206 EGIDFVTNTEIGV-DISADELKE------QFDAVVLAGGATKPR--DLPIPGRELKGIHY 256
Query: 145 LREIDDA-------DKLVEAIKAKKNGKAVVV-GGGYIGLE-LSAALKINNIDVSM--VY 193
E + + I K GK VVV GGG G + + +L+ V +
Sbjct: 257 AMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316
Query: 194 PEP---------W-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAV-GFTTNADGEVKEV 242
P+P W PR++ D A +E A+ G + ++ F + +G+V +
Sbjct: 317 PKPPEARAKDNPWPEWPRVYRVDYA--HEEAAAHYGRDPREYSILTKEFIGDDEGKVTAL 374
Query: 243 --------KLKDGR-----------TLEADIVVVGVG----GRPLISLFKGQVAENKGGI 279
K +DG+ EAD+V++ +G + L+ F +
Sbjct: 375 RTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNIS 434
Query: 280 ETDDFFKTSADDVYAVGD 297
D + TS V+A GD
Sbjct: 435 AGYDDYSTSIPGVFAAGD 452
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-05
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 26/190 (13%)
Query: 117 ILVIATGST--VLRLTDFGVEGA--DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 172
+++IATG++ +L A D + I R++ D D+L E +VVG G
Sbjct: 142 VVLIATGASPRILP-------TAEPDGERILTWRQLYDLDELPE--------HLIVVGSG 186
Query: 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232
G E ++A + V++V +P AD A E +A +G+ ++K + A
Sbjct: 187 VTGAEFASAYTELGVKVTLVSSRDRVLPGE-DADAAEVLEEVFARRGMTVLKRSRAESVE 245
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFKGQVAENKGG-IETDDFFKTS 288
DG V V L DGRT+E ++ VG P + L + V G I D +TS
Sbjct: 246 RTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303
Query: 289 ADDVYAVGDV 298
+YA GD
Sbjct: 304 VPGIYAAGDC 313
|
Length = 466 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
G ++GGGYIG+E ++ V+++ +PR DIA ++G+ II
Sbjct: 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVDII 217
Query: 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ---VAEN-KGGI 279
V ++ + +V +V + + D +++ G +P + + +A N +G I
Sbjct: 218 L-NAHVERISHHENQV-QVHSEHAQLA-VDALLIASGRQPATASLHPENAGIAVNERGAI 274
Query: 280 ETDDFFKTSADDVYAVGDV 298
D + T+AD+++A+GDV
Sbjct: 275 VVDKYLHTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 44/248 (17%)
Query: 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIF-- 143
G+++ L+T + + DI + L K+ + ++TG T+ R T + G D ++
Sbjct: 347 GVKIHLNTRVGK-DIPLEELRE------KHDAVFLSTGFTLGRST--RIPGTDHPDVIQA 397
Query: 144 --YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMP 200
LREI D + E K K VV+GGG + ++++ ++ ++ ++ V + +
Sbjct: 398 LPLLREIRDYLR-GEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLE 456
Query: 201 RLFT---ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--------DGR- 248
R F AD+ EG +G+ I G + + +VK VK K +GR
Sbjct: 457 RTFEEMPADMEEIEEG--LEEGVVIYPGWGPMEVVIE-NDKVKGVKFKKCVEVFDEEGRF 513
Query: 249 ----------TLEADIVVVGVGGRPLISLFKGQVAE----NKGGIETDDFFKTSADDVYA 294
+EAD+VV +G P S ++ +G I T+++ +TS ++A
Sbjct: 514 NPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFA 573
Query: 295 VGDVATFP 302
GD+ P
Sbjct: 574 GGDIVHGP 581
|
Length = 604 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 60/259 (23%), Positives = 93/259 (35%), Gaps = 60/259 (23%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
+ G+E L+ + R DI + LL +Y + +ATG+ R + G DAK +
Sbjct: 184 ERSGVEFKLNVRVGR-DITLEELLK------EYDAVFLATGAGKPR--PLDIPGEDAKGV 234
Query: 143 F----YL----REIDDADKLVEAIKAKKNGKAVVVGGGYIGLE-LSAALKINNIDVSMVY 193
+L +E+ AK + VV+GGG ++ AL++ V+ Y
Sbjct: 235 AFALDFLTRLNKEVLGDFAEDRTPPAK-GKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY 293
Query: 194 PE-------PWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLK 245
E W AA E A +G++ + F N G V VK
Sbjct: 294 REDRDDETNEWPT-------WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFG 346
Query: 246 DGR---------------------TLEADIV--VVGVGGRPLI-SLFKGQVAENKGG-IE 280
T AD V +G G L + + +K G I+
Sbjct: 347 RVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIK 406
Query: 281 TDDFFK-TSADDVYAVGDV 298
D+ + TS V+A GD
Sbjct: 407 VDENLQQTSIPGVFAGGDA 425
|
Length = 457 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 20/152 (13%)
Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTA---DIAAFYEGYYAN 217
+ +V+GGG IGLE+ L V M ++ A DI +
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEM-------FDQVIPAADKDIVKVFTKRIKK 227
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVA-- 273
+ I+ T DG ++ K D V+V VG P L + A
Sbjct: 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGV 286
Query: 274 --ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ +G I D +T+ ++A+GD+ PM
Sbjct: 287 EVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD---IAAFYEGYYANKGIKII 223
+V+G + LEL+ A V+++ R+ + + + E + +GI+++
Sbjct: 182 LVIGASVVALELAQAFARLGSRVTVL-----ARSRVLSQEDPAVGEAIEAAFRREGIEVL 236
Query: 224 KGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGI 279
K T A + D +E L+ + TL A+ ++V G P ++L V +G I
Sbjct: 237 KQTQA----SEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292
Query: 280 ETDDFFKTSADDVYAVGDVATFPMKLY 306
D+ +T+ +YA GD P +Y
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVY 319
|
Length = 468 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 67/275 (24%), Positives = 103/275 (37%), Gaps = 66/275 (24%)
Query: 84 EKGIELILSTEIV--------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 135
E G+ T++ D + ++S L+ KY ++IATG+ R G+
Sbjct: 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRK--LGIP 137
Query: 136 GADAKNIF----YLREIDDADKLVEAIKAK----KNGKAVVVGGGYIGLELSAALKINNI 187
G D ++ YL I A KL K + K VVVG G ++ AAL+ +
Sbjct: 138 GEDLPGVYSALEYLFRIR-AAKLGYLPWEKVPPVEGKKVVVVGAGLTAVD--AALEAVLL 194
Query: 188 ---DVSMVYPEPWCMPRLFTADIAAFYEGYY-----ANKGIKIIKGTVAVGFTTNADGEV 239
V + Y I G Y +G++ ++ V +G V
Sbjct: 195 GAEKVYLAYRRT----------INEAPAGKYEIERLIARGVEFLELVTPVRI--IGEGRV 242
Query: 240 KEVKLKDGR--------------------TLEADIVVVGVGGRPLISLFKGQVA----EN 275
+ V+L R LEAD VV +G P F +
Sbjct: 243 EGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP-TPPFAKECLGIELNR 301
Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
KG I D+ TS + V+A GDV T P K+ + ++
Sbjct: 302 KGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIK 336
|
Length = 352 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 4/142 (2%)
Query: 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218
K K+ + + G GYI +EL + + S ++ + R F I E
Sbjct: 233 KIKEAKRIGIAGSGYIAVELINVVNRLGAE-SYIFARGNRLLRKFDETIINELENDMKKN 291
Query: 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN 275
I II + + + D V+ VG P ++L +
Sbjct: 292 NINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTP 351
Query: 276 KGGIETDDFFKTSADDVYAVGD 297
KG I+ DD +TS +YAVGD
Sbjct: 352 KGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
K K +VGGGYI LE + DV V+ + R F ++ F + +GI+
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVH-VFIRQKKVLRGFDEEVRDFVAEQMSLRGIE 309
Query: 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP------LISLFKGQVAEN 275
+ADG + +K G V+ G +P L + G +
Sbjct: 310 FHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEV--GVKMDK 366
Query: 276 KGGIETDDFFKTSADDVYAVGDV 298
G IE D++ +TS ++AVGDV
Sbjct: 367 NGAIEVDEYSRTSVPSIWAVGDV 389
|
Length = 558 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 33/162 (20%)
Query: 165 KAVVVGGGYIGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK--GIK 221
K VVGGG ++ + A ++ V++VY R ++ A E K GI+
Sbjct: 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVY-------RRSEEEMPARLEEVKHAKEEGIE 624
Query: 222 IIKGTVAVGFTTNADGEVKEVKLK---------DGR-----------TLEADIVVVGVGG 261
+ + + + G VK+V L+ GR T++ D+V+V VG
Sbjct: 625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGV 684
Query: 262 RP---LISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300
P + S G KG I D+ ++S +YA GD+
Sbjct: 685 SPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726
|
Length = 752 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI----- 222
V+GGG+ E + L V+++ EP FT E + I++
Sbjct: 148 VIGGGFAAAEEAVFLTRYASKVTVIVREP-----DFTCA-KLIAEKVKNHPKIEVKFNTE 201
Query: 223 ---IKGTVAV---GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 276
G + F N GE+ E K V V VG P LFKG V +K
Sbjct: 202 LKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFG--VFVFVGYAPSSELFKGVVELDK 259
Query: 277 GG-IETDDFFKTSADDVYAVGDV 298
G I T++ +T+ VYA GD+
Sbjct: 260 RGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 37/215 (17%)
Query: 108 ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167
+G FK + ++IATGST + V+ K++F D A KL
Sbjct: 268 KSGKEFKVKNIIIATGSTPNIPDNIEVDQ---KSVF---TSDTAVKLEGLQN-----YMG 316
Query: 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE---------GYYANK 218
+VG G IGLE +V P +P L AD+A ++E + N
Sbjct: 317 IVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNT 375
Query: 219 GIKIIKGT-----VAVGFTTNADGEVKEVK--LKDGRTLEADIVVVGVGGRPL---ISLF 268
I+ ++ V +G + GE K + D + D +V G +P + L
Sbjct: 376 LIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435
Query: 269 KGQVAENKGGIETDDFFKTSADD------VYAVGD 297
K ++ +G + D+ + +D ++ +GD
Sbjct: 436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGD 470
|
Length = 659 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 56/223 (25%), Positives = 88/223 (39%), Gaps = 48/223 (21%)
Query: 111 LIFKYQILVIATGSTVLRLTDF-GVE--GADAKNIFYLR-------EIDDADKLVEAIKA 160
L +Y + I TG+ + +L + G E G + N F R E AD V A K
Sbjct: 215 LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGK- 273
Query: 161 KKNGKAVVVGGGYIGLELS-AALKINNIDVSMVYPEPWCMPRLFTADIAAFYE--GYYAN 217
VV+GGG ++ + AL++ +V +Y R D+ A E +
Sbjct: 274 ----SVVVIGGGNTAVDSARTALRLG-AEVHCLY-------RRTREDMTARVEEIAHAEE 321
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--------------------TLEAD--IV 255
+G+K V + +G V+ VK + LEAD IV
Sbjct: 322 EGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIV 381
Query: 256 VVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 298
+G G P+++ +G I D+ +TS V+A GD+
Sbjct: 382 AIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
K GK ++VG YIGLE + L DV++ R F + Y +G
Sbjct: 180 KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRGFDRQCSEKVVEYMKEQGT 237
Query: 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK-----GQVAEN 275
++G V + D ++K V DG T D V+ G +P I V ++
Sbjct: 238 LFLEGVVPINI-EKMDDKIK-VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKS 295
Query: 276 KGGIETDDFFKTSADDVYAVGDVA 299
I +D T+ +++AVGDV
Sbjct: 296 NKIIAPND--CTNIPNIFAVGDVV 317
|
Length = 499 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 54/232 (23%)
Query: 136 GADAKNIFYLREIDDADKLVEAI----KAKKNGKAV-------VVGGGYIGLELS-AALK 183
GAD L +++A+ + K G A+ VVGGG ++ + AAL+
Sbjct: 632 GADKNGGLKLEG--GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689
Query: 184 INNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYA--NKGIKIIKGTVAVGFTTNADGEV- 239
+ + V++VY R ++ A+ E Y G++ + F +ADG +
Sbjct: 690 VPGVEKVTVVY-------RRTKQEMPAWREEYEEALEDGVEFKELLNPESF--DADGTLT 740
Query: 240 -KEVKLKD----GR----------TLEADIVVVGVGGRPLISLFK--GQVAENKGGIETD 282
+ +KL + GR TLEAD V+ +G + L K G + KG D
Sbjct: 741 CRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVD 800
Query: 283 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334
+TS +VY +GDV P + V + AR++A I++ EG
Sbjct: 801 ANGETSLTNVYMIGDVQRGPSTI------VAAIADARRAA----DAILSREG 842
|
Length = 1019 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 100.0 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.98 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.97 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.97 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.96 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.96 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.96 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.96 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.96 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.95 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.89 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.89 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.86 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.86 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.85 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.82 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.78 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.78 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.77 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.75 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.74 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.74 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.64 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.61 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.61 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.55 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.53 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.46 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.32 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.28 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.27 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 99.18 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.17 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.17 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.11 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.09 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.09 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 99.09 | |
| PLN02463 | 447 | lycopene beta cyclase | 99.07 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.04 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.03 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 99.02 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 99.01 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.0 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.99 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.97 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.97 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.96 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.95 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.94 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.93 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.92 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.92 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.91 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.91 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.9 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.9 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.89 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.89 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.88 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.88 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.88 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.87 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.86 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.85 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.85 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.83 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.83 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.83 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.83 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.82 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.8 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.8 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.79 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.79 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.78 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.78 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.77 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.75 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.75 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.75 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.74 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.74 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.73 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.73 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.72 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.71 | |
| PLN02612 | 567 | phytoene desaturase | 98.71 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.71 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.71 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.71 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.71 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.7 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.7 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.69 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.69 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.68 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.68 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 98.68 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.68 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.66 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.66 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.66 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.66 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.65 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.65 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.63 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.63 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.62 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.62 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.61 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.6 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.6 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.6 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.59 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.59 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.58 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.57 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.57 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.56 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.56 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 98.56 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.55 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.55 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.55 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.54 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.53 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.53 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.53 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.53 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.52 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.52 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.51 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.51 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 98.51 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.51 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.51 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.5 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.5 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 98.49 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.48 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.48 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.47 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.47 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.47 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.46 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.46 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.45 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.44 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.44 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.44 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.43 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.42 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.42 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.42 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.41 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.41 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.4 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.4 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.4 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.4 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.39 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.38 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.38 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.37 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.37 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.37 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.36 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.36 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.35 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 98.35 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.35 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.34 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 98.34 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.34 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.33 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.32 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.31 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.31 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.3 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.29 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.29 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.29 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.28 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.28 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.28 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.27 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.27 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.27 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.27 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.27 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.26 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.26 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.26 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.26 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.25 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.25 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 98.25 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.25 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.25 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.24 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.23 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.23 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.23 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.23 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.21 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.21 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 98.21 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.21 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.21 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 98.21 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.2 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.2 | |
| PLN02487 | 569 | zeta-carotene desaturase | 98.2 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.2 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 98.2 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.2 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.2 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.19 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.19 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.19 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.19 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.18 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 98.18 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 98.17 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.17 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.16 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 98.16 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.16 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 98.16 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 98.15 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 98.15 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.11 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 98.11 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.1 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 98.1 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.1 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 98.1 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 98.09 | |
| PLN02507 | 499 | glutathione reductase | 98.09 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.08 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 98.08 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 98.07 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.05 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 98.05 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.05 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 98.05 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.04 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.04 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 98.04 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 98.03 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 98.02 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 98.02 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 98.02 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 98.01 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.01 | |
| PLN02568 | 539 | polyamine oxidase | 98.01 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.01 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 98.0 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.99 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.99 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.97 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.97 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.95 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.95 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.95 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.94 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.93 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.93 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.93 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.93 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.93 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.93 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.92 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.92 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.91 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.91 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.91 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.9 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.89 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.88 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.88 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.87 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.86 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.86 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.85 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.83 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.83 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.82 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.82 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.81 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.81 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.79 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.78 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.77 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.77 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 97.75 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.75 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.74 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.73 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.72 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.72 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.71 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.71 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.7 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.7 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.69 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.69 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 97.69 | |
| PLN02546 | 558 | glutathione reductase | 97.69 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 97.67 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.67 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.67 | |
| PLN02985 | 514 | squalene monooxygenase | 97.66 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.65 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.64 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.64 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.63 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.63 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.63 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.61 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.61 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.6 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.6 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.59 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.59 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.58 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.56 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.56 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.53 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.53 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.53 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 97.53 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.52 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.52 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.52 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.5 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.46 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.45 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 97.45 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.44 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.43 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.42 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 97.4 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.39 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.39 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 97.38 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.38 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.37 | |
| PLN02676 | 487 | polyamine oxidase | 97.36 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 97.31 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.31 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.31 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.28 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 97.27 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.26 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.24 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 97.22 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.22 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.22 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 97.21 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.2 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.2 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.18 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.18 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 97.18 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.17 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 97.16 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 97.14 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.12 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.12 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.11 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.09 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.06 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 97.01 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.96 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 96.96 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.94 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.94 | |
| PLN02985 | 514 | squalene monooxygenase | 96.92 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 96.87 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.87 | |
| PF14721 | 133 | AIF_C: Apoptosis-inducing factor, mitochondrion-as | 96.73 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 96.73 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 96.69 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.67 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.65 | |
| PLN03000 | 881 | amine oxidase | 96.64 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.61 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.57 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 96.55 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.55 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.52 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.52 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 96.51 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.51 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 96.47 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.44 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.43 | |
| PLN02976 | 1713 | amine oxidase | 96.41 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 96.37 | |
| PLN02785 | 587 | Protein HOTHEAD | 96.37 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.35 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.34 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.33 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 96.28 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.18 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.12 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.11 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.07 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.06 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.05 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 95.92 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 95.84 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.82 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 95.79 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 95.73 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 95.67 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 95.65 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 95.65 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 95.64 | |
| TIGR03862 | 376 | flavo_PP4765 uncharacterized flavoprotein, PP_4765 | 95.61 | |
| TIGR02352 | 337 | thiamin_ThiO glycine oxidase ThiO. This family con | 95.55 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 95.49 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.41 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.4 | |
| PLN02815 | 594 | L-aspartate oxidase | 95.4 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 95.4 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 95.36 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 95.36 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.36 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 95.35 |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=419.25 Aligned_cols=392 Identities=27% Similarity=0.407 Sum_probs=328.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|||||||+||++||..|++.+. +.+|+||++++..+|.+|.+++.++........ .....+++.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-----------~~~~~~~~~ 69 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-----------QVLPANWWQ 69 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-----------ccCCHHHHH
Confidence 45789999999999999999999875 567999999999999998888766543221111 123356777
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.++.|..++++.+.+.+.++.++.||+||||||++|+.++ +++...+++++++++.++.++++.+. .+
T Consensus 70 ~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p---~~~~~~~~v~~~~~~~da~~l~~~~~--~~ 144 (396)
T PRK09754 70 ENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP---LLDALGERCFTLRHAGDAARLREVLQ--PE 144 (396)
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC---CCCcCCCCEEecCCHHHHHHHHHHhh--cC
Confidence 88999999989999999999999988889999999999999998766 34445577999999999999888775 47
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++++.++++.. ++. ..+.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~ 221 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELT 221 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEE
Confidence 8999999999999999999999999999999999988767889999999999999999999999999975 232 4577
Q ss_pred eCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+.+|+++++|.|++++|.+||+.++.. ++.. +++|.||+++||++|||||+|||+..+.. .+...+.++|..|..||
T Consensus 222 l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg 299 (396)
T PRK09754 222 LQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQA 299 (396)
T ss_pred ECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHH
Confidence 889999999999999999999987743 4444 46799999999999999999999987766 66666778999999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCE-EEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
+.||+||++.. ..|..+|++|+.++++.++.+|...++. +..++.. ...|..+++++|+|+|+.++|+ .
T Consensus 300 ~~aa~ni~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~-~ 369 (396)
T PRK09754 300 QIAAAAMLGLP-----LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLCRGNPE----TQKAIWFNLQNGVLIGAVTLNQ-G 369 (396)
T ss_pred HHHHHHhcCCC-----CCCCCCCceEEEeCCccEEEeeCCCCCEEEEecCCC----CceEEEEEeeCCEEEEEEEECC-H
Confidence 99999999753 5678899999999999999999765543 3344322 3456777778999999999985 6
Q ss_pred HHHHHHHHHHHcCCCCCChhhhhccCC
Q 013914 402 EENKAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
.+...+..+|+.+.++ +.+.|.++..
T Consensus 370 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 395 (396)
T PRK09754 370 REIRPIRKWIQSGKTF-DAKLLIDENI 395 (396)
T ss_pred HHHHHHHHHHHCCCCC-CHHHhcCccc
Confidence 7888899999999988 7778887754
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=412.93 Aligned_cols=397 Identities=23% Similarity=0.285 Sum_probs=303.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CC---CCCCCccCccccCCCCCC----CCC-CcccccCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VA---PYERPALSKAYLFPEGTA----RLP-GFHVCVGS 72 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~---~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~ 72 (434)
|+++||+||||+||||..||.++++.|.+ |.++|+.. .. ....|.++|.++...... ... .+......
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~k---valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~ 77 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLK---VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEV 77 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCC---EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCC
Confidence 34579999999999999999999999987 99999994 32 123466677776554221 010 11111110
Q ss_pred -----------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC--CcEEEcceEEEecCCCcccccCCC
Q 013914 73 -----------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT--GLIFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 73 -----------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
........+++..+++++.+...+. +.++|.+.+ .++++++++|||||++|+.|+.
T Consensus 78 ~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~---~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~-- 152 (454)
T COG1249 78 PKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFV---DPHTVEVTGEDKETITADNIIIATGSRPRIPPG-- 152 (454)
T ss_pred CCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEEC---CCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCC--
Confidence 0011223334556999999854332 467777665 4789999999999999999985
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
++.+...+++..+...... .|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++++.+.+
T Consensus 153 -~~~~~~~~~~s~~~l~~~~--------lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~ 222 (454)
T COG1249 153 -PGIDGARILDSSDALFLLE--------LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTK 222 (454)
T ss_pred -CCCCCCeEEechhhccccc--------CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHH
Confidence 4444444555444222222 4899999999999999999999999999999999999997 89999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKT 287 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t 287 (434)
.|++.|+++++++.+++++..+++ ..+.+++|+ ++++|.+++|+|++||++-+ +.++.. ++|+|.||++++|
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T 300 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc
Confidence 999999999999999999874444 577887776 78999999999999999943 557888 5689999988888
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|||||+|||++.+. +...|..||++|+.|+++. ......|..+|+.+++.|+++++ |+++
T Consensus 301 nvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~--~~~~~d~~~iP~~ift~Peia~V--Glte~ea~ 366 (454)
T COG1249 301 NVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGG--KRTPIDYRLIPSVVFTDPEIASV--GLTEEEAK 366 (454)
T ss_pred CCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCC--CCCcCcccCCCEEEECCCcceee--eCCHHHHH
Confidence 9999999999988764 4566889999999999982 22346788999999999998877 6654
Q ss_pred --CCEEEEcCCCcc--------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
+..+..+..+.. .++.+|+|+++ ++++|||+|++|+++.|+ +.++.||.+++|.+|+...-.+.+++
T Consensus 367 ~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~ 446 (454)
T COG1249 367 EAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTL 446 (454)
T ss_pred hcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCCh
Confidence 211222222211 34678999887 579999999999999996 99999999999888777666666666
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
.+
T Consensus 447 sE 448 (454)
T COG1249 447 SE 448 (454)
T ss_pred HH
Confidence 54
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=401.70 Aligned_cols=400 Identities=18% Similarity=0.229 Sum_probs=301.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||++||..|++++ ++.+|+|||+++...|.++.+....- . ..+..... .......+.++.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~-~~~~I~li~~~~~~~~~~~~lp~~~~-~----~~~~~~~~----~~~~~~~~~~~~~ 72 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD-KESDIIIFEKDRDMSFANCALPYYIG-E----VVEDRKYA----LAYTPEKFYDRKQ 72 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC-CCCCEEEEECCCCcccccCCcchhhc-C----ccCCHHHc----ccCCHHHHHHhCC
Confidence 7999999999999999999875 35779999999887777654322110 0 00000000 0011234446679
Q ss_pred cEEEcCCeeEEEECCCCEEEccCC---c--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC
Q 013914 87 IELILSTEIVRADIASKTLLSATG---L--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~---~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~ 161 (434)
++++.+++|+.||++.++|.+.++ . ++.||+||||||++|+.|+ ++ ..++++.+++.+...+.+.+...
T Consensus 73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~---~~---~~~~~~~~~~~~~~~l~~~l~~~ 146 (438)
T PRK13512 73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLG---FE---SDITFTLRNLEDTDAIDQFIKAN 146 (438)
T ss_pred CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCC---CC---CCCeEEecCHHHHHHHHHHHhhc
Confidence 999988899999999999887643 2 4689999999999997665 33 36788888999998888887665
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++++++++. ..
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~------~~ 219 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEIDAING------NE 219 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHhcCCEEEECCeEEEEeC------CE
Confidence 6799999999999999999999999999999999988875 7999999999999999999999999999964 24
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHH
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+++.+|+++++|.+++|+|++||+++++. ++.. ++|+|.||+++||++|||||+|||+.......+.+...+.+..|.
T Consensus 220 v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~ 299 (438)
T PRK13512 220 VTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred EEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHH
Confidence 66778889999999999999999988754 5665 568899999999999999999999975433333333335667788
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCEE-------EEcC--CCc--ccCCCcEEEEEE--
Q 013914 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTV-------LFGD--NDL--ASATHKFGTYWI-- 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~-------~~~~--~~~--~~~~~~~~~~~~-- 386 (434)
++|+.+++||++... .....+..+|. ..+++..+..+|.++.+.. .+.. ... ...+.+|+|+++
T Consensus 300 ~~a~~~a~ni~g~~~-~~~~~~~~~~~--~~~~~~~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~ 376 (438)
T PRK13512 300 RAASIVAEQIAGNDT-IEFKGFLGNNI--VKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDT 376 (438)
T ss_pred HHHHHHHHHhcCCCc-cccCCcccceE--EEEcCceEEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEEC
Confidence 999999999986421 11112333444 4445556666687653211 1100 110 124567888877
Q ss_pred eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013914 387 KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 387 ~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l-~~~~~~~~~ 432 (434)
++++|||+|++|++ +.+ ++.++.+|++++|++|+..+ ..+.++|.+
T Consensus 377 ~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 425 (438)
T PRK13512 377 SNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSH 425 (438)
T ss_pred CCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCc
Confidence 57999999999996 676 59999999999999988775 555666653
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=382.55 Aligned_cols=401 Identities=53% Similarity=0.880 Sum_probs=359.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...++|||+|++|..|+.++++.+. ..+++++.++..+||.++.+++.+... +........+|++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~-------------~~~~a~r~~e~Yke 139 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTV-------------GEGLAKRTPEFYKE 139 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeec-------------cccccccChhhHhh
Confidence 4689999999999999999999986 567899998988899887776654432 33334577889999
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
.++++++++.|+.+|...+++.+.+|++++|++|+||||+.++.++ ++|.+.++++++++.+++..+...+. ..+
T Consensus 140 ~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~---~pG~~~~nv~~ireieda~~l~~~~~--~~~ 214 (478)
T KOG1336|consen 140 KGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLD---IPGVELKNVFYLREIEDANRLVAAIQ--LGG 214 (478)
T ss_pred cCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCC---CCCccccceeeeccHHHHHHHHHHhc--cCc
Confidence 9999999999999999999999999999999999999999999888 57878899999999999998887776 377
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+++++|+|++|+|+|..+...+.+||++++.+.++++.+.+.+.+.+...++++||++++++.+.+++..++|++..|.+
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l 294 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL 294 (478)
T ss_pred eEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 245 KDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
.||++++||+|++.+|.+||+.++..+..+ ..|+|.||+.+||++|||||+|||+..+...++..++.+|++.|+.+|+
T Consensus 295 ~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 295 KDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred ccCCEeccCeEEEeeccccccccccccceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999865444 8899999999999999999999999999988887777899999999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHH
Q 013914 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE 403 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~ 403 (434)
.+...+....+ ..++++|+||+.+|+..|...|...++.+.+|+.. ...|+.+|++ +..+++.+-+....+
T Consensus 375 ~av~ai~~~~~----~~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~G~~e----~~~f~ay~~k-~~~v~a~~~~g~~~~ 445 (478)
T KOG1336|consen 375 QAVKAIKMAPQ----DAYDYLPYFYTRFFSLSWRFAGDGVGDVVLFGDLE----PGSFGAYWIK-GDKVGAVAEGGRDEE 445 (478)
T ss_pred hhhhhhhccCc----ccccccchHHHHHhhhhccccCcCccceeeecccc----cccceeeEee-ccEEEEEeccCCChH
Confidence 88877766543 33889999999999999999998888889999877 3459999999 999999999877777
Q ss_pred HHHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 404 NKAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 404 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.+.++.++++|+.+..++.+...+.+|+..
T Consensus 446 ~~~~a~l~~~~~~v~~~~~~~~~~~~~~~~ 475 (478)
T KOG1336|consen 446 VSQFAKLARQGPEVTSLKLLSKSGDSFWLT 475 (478)
T ss_pred HHHHHHHHhcCCcchhhhhccccchhhHHh
Confidence 899999999999999888898888887754
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-52 Score=404.18 Aligned_cols=405 Identities=21% Similarity=0.288 Sum_probs=310.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+++|.+|++.+. ..+|+|||+++...|..+.+.. +...... .+. .......+.+++.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~--~~~-------~~~~~~~~~~~~~g 70 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFD--DPN-------TMIARTPEEFIKSG 70 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccC--CHH-------HhhcCCHHHHHHCC
Confidence 79999999999999999999763 4569999999876665433221 1110000 000 00123456677889
Q ss_pred cEEEcCCeeEEEECCCCEEEccC---CcEEE--cceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC
Q 013914 87 IELILSTEIVRADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~ 161 (434)
++++.++.|+.++++.+.+.+.+ +.++. ||+||+|||++|+.|+ ++|.+.+++++++++.+..++++.+...
T Consensus 71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~---i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP---IKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 99998889999999999887754 55666 9999999999998877 5777667899999999888888888765
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|+|+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||++++++++.++.. ++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~ 225 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEG 225 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEE
Confidence 689999999999999999999999999999999998887557999999999999999999999999999965 444445
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHH
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHAR 319 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~ 319 (434)
+.++++ ++++|.+++|+|++|++++++. ++.. ++|+|.||+++||++|||||+|||+..+....+...+.+++..|.
T Consensus 226 v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~ 304 (444)
T PRK09564 226 VVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTAN 304 (444)
T ss_pred EEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHH
Confidence 555544 7999999999999999987754 5665 678899999999999999999999997665555555567889999
Q ss_pred HHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC------E---EEEcCCCc----ccCCCcEEEEEE
Q 013914 320 KSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------T---VLFGDNDL----ASATHKFGTYWI 386 (434)
Q Consensus 320 ~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------~---~~~~~~~~----~~~~~~~~~~~~ 386 (434)
+||+.+|+||++.... .+ ...+.....+++..+..+|.++.+ . ..+..... .....+|+|+++
T Consensus 305 ~qg~~~a~ni~g~~~~---~~-~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~ 380 (444)
T PRK09564 305 KLGRMVGENLAGRHVS---FK-GTLGSACIKVLDLEAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIY 380 (444)
T ss_pred HHHHHHHHHhcCCCCC---CC-CcccceEEEECCEEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEE
Confidence 9999999999975321 11 122333344566777778876521 1 11111111 123467888877
Q ss_pred --eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhccC-CCccc
Q 013914 387 --KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 432 (434)
Q Consensus 387 --~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~ 432 (434)
++++|||+|++|+. +.+ ++.++.+|++++|++|+..+..+. ++|++
T Consensus 381 ~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 431 (444)
T PRK09564 381 EADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFAR 431 (444)
T ss_pred ECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence 58999999999986 656 599999999999999776555444 55554
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=402.28 Aligned_cols=399 Identities=19% Similarity=0.258 Sum_probs=288.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC------CCCCCcc----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARLPGFH---- 67 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~---- 67 (434)
|||.+|||+||||||||++||.+|+++|++ |+|||+....+ ...|.++|.++..... ....++.
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMK---VALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGP 77 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 788899999999999999999999999987 99999975422 2223334433321100 0000110
Q ss_pred --cccCC----------CCCCCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC
Q 013914 68 --VCVGS----------GGERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 68 --~~~~~----------~~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
..... ........++++. |++++.++.+. .+.+++.+ ++.++.||+||||||++|+.|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~---~~~~~v~v-~~~~~~~d~lViATGs~p~~p~---i 150 (463)
T PRK06370 78 VSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF---ESPNTVRV-GGETLRAKRIFINTGARAAIPP---I 150 (463)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE---ccCCEEEE-CcEEEEeCEEEEcCCCCCCCCC---C
Confidence 00000 0001223445555 89999885543 35667766 4567999999999999999887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++..+..+.. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 151 ~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~ 221 (463)
T PRK06370 151 PGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREI 221 (463)
T ss_pred CCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHH
Confidence 666555565543332211 14789999999999999999999999999999999999886 789999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccChh-h-h-hccccc-cCCcEEeCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~~~~~D~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
+++.||++++++++.+++..+++....+... ++.++++|.|++|+|++||++ + + ..++.. ++|+|.||+++||++
T Consensus 222 l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~ 301 (463)
T PRK06370 222 LEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTN 301 (463)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCC
Confidence 9999999999999999987333322223332 345799999999999999998 3 2 345655 578899999999999
Q ss_pred CcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------
Q 013914 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 363 (434)
Q Consensus 290 ~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 363 (434)
|+|||+|||++.+ .....|..||+.|++||++... ....+..+|+..+..+++ ..+|.++
T Consensus 302 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~i--a~vG~te~~a~~~ 367 (463)
T PRK06370 302 PGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGR--RKVSDRIVPYATYTDPPL--ARVGMTEAEARKS 367 (463)
T ss_pred CCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--CCcccccCCeEEEcCCCc--EeeeCCHHHHHHc
Confidence 9999999998754 3566788999999999987522 124556678766655554 4557664
Q ss_pred CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 364 GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 364 ~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
|..+.. .+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.+++.+
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 447 (463)
T PRK06370 368 GRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSE 447 (463)
T ss_pred CCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHH
Confidence 221221 111111 23567898888 479999999999999885 9999999999999988777777766654
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=401.84 Aligned_cols=399 Identities=17% Similarity=0.184 Sum_probs=291.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCccCccccCCCC-------CCCCCCcccc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEG-------TARLPGFHVC 69 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~-------~~~~~~~~~~ 69 (434)
|+|++|||+||||||||++||.+|+++|.+ |+|||+.+..+ +..|..++.+..... ...+..+...
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~---v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~ 77 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKR---VAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVK 77 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCE---EEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCc
Confidence 778889999999999999999999999987 99999964321 112223332211100 0000000000
Q ss_pred cCCC--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCC
Q 013914 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
.... ......+.+++.+++++.+ .+..++....++...++. ++.||++|||||++|+.|+.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~-- 154 (461)
T PRK05249 78 LRITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPD-- 154 (461)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC--
Confidence 0000 0011233456679999987 555555544445555554 68999999999999988874
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
++.+..++++.. +...+. . .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+
T Consensus 155 -~~~~~~~v~~~~---~~~~~~----~-~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 224 (461)
T PRK05249 155 -VDFDHPRIYDSD---SILSLD----H-LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSY 224 (461)
T ss_pred -CCCCCCeEEcHH---Hhhchh----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHH
Confidence 444445555433 222221 1 4799999999999999999999999999999999999986 89999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
.+++.||++++++++++++..+++ ..+++.+|+++++|.+++|+|++||++++ ..++.. ++|+|.||+++||+.
T Consensus 225 ~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 302 (461)
T PRK05249 225 HLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV 302 (461)
T ss_pred HHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence 999999999999999999863333 45667788899999999999999999854 345666 678899999999999
Q ss_pred CcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------
Q 013914 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 363 (434)
Q Consensus 290 ~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 363 (434)
|+|||+|||++.+ ..+..|..+|+.||.||++... ...+..+|+..++.|+++.+ |.++
T Consensus 303 ~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~i~~~p~ia~v--G~te~~a~~~ 367 (461)
T PRK05249 303 PHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT---AHLIEDIPTGIYTIPEISSV--GKTEQELTAA 367 (461)
T ss_pred CCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc---ccccCCCCeEEECCCcceEe--cCCHHHHHHc
Confidence 9999999999754 4567899999999999986432 25667899998888876555 6654
Q ss_pred CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 364 GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 364 ~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
|..+.. ....+. ....+|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+.-+.+++.+
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 447 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAE 447 (461)
T ss_pred CCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 221211 112211 23567888887 579999999999999885 9999999999999977776666666543
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=393.18 Aligned_cols=395 Identities=17% Similarity=0.225 Sum_probs=287.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccC--C--
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVG--S-- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~-- 72 (434)
|+|||+||||||||++||..|++.|.+ |+|||++...+ ...|.+++.++..... ...+.+..... .
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAK---ALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTF 77 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCc---EEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCcc
Confidence 469999999999999999999999987 99999975422 2234445443322210 00011100000 0
Q ss_pred --------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc-cCCCCCCC
Q 013914 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL-TDFGVEGA 137 (434)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~-~~~~~~g~ 137 (434)
.........+++.+++++.++.+. .+.+++.+ ++..+.||++|||||++|+.| + +||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~---i~g~ 150 (450)
T TIGR01421 78 NWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPEN---IPGA 150 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCC---CCCC
Confidence 000112233456789999985443 24566665 456799999999999999877 5 5664
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+. .+ +.++...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus 151 ~~--~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~ 219 (450)
T TIGR01421 151 EL--GT---DSDGFFALE----E-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK 219 (450)
T ss_pred ce--eE---cHHHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH
Confidence 31 11 223332221 1 4789999999999999999999999999999999999876 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
.||++++++.++++..+.++ ...+.+.+| +++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|||
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEG-KLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCc-eEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCE
Confidence 99999999999999863333 235677777 579999999999999999853 345666 678899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC-------
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------- 365 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------- 365 (434)
||+|||++.+ ..+..|..||+.+++||++... .....+..+|++.++.++++.+ |+++.+
T Consensus 299 yAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~p~~~f~~p~ia~v--Glte~~a~~~~g~ 365 (450)
T TIGR01421 299 YALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKT-DDKLDYNNVPTVVFSHPPIGTI--GLTEKEAIEKYGK 365 (450)
T ss_pred EEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCC-CCccCcccCCeEEeCCCceEEE--eCCHHHHHhhcCC
Confidence 9999999754 3567889999999999986431 1235677889888877776665 655421
Q ss_pred -EEEEcCC--Cc------ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 366 -TVLFGDN--DL------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 366 -~~~~~~~--~~------~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.+..... .. ....++|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+..+.+++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T TIGR01421 366 ENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEE 445 (450)
T ss_pred CCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHH
Confidence 1111111 11 024567888877 479999999999999986 99999999999999888877777776653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-50 Score=392.96 Aligned_cols=394 Identities=20% Similarity=0.229 Sum_probs=289.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC---------C-C---CCCCCCccCccccCCCCC----CCCCCcc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE---------A-V---APYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~---------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+|||+||||||+|+.||..++++|.+ |+|||+. . . +.+..|.++|.++..... .....+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~---V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAK---VGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999988 9999962 1 1 112224445555322211 0000010
Q ss_pred cccCCC------------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcc
Q 013914 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 127 (434)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~ 127 (434)
...... ........+...+++++.+ .+..+++....|...+|+ ++.||+||||||++|.
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 000000 0001123344578999997 777777776677776765 5889999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+. .. +.+++..+.. .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++
T Consensus 181 ~p~---ipG~~~--~~---~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 181 RPN---IPGKEL--AI---TSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCC---CCCccc--ee---chHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 877 465431 12 3344443321 3789999999999999999999999999999999988876 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.|++.||+++++++|++++..+++ ..+.+.+|+++++|.|++++|++||++++ ..++.. ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863333 45677788899999999999999999864 345666 568899999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
++||++|||||+|||++.+ .....|..||+.+++||++... ....+..+|+.+++.|+++.+ |+++
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~--~~~~~~~~p~~if~~p~ia~v--Glte 390 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQP--TKPDYENVACAVFCIPPLSVV--GLSE 390 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCC--CcCCCCCCCeEEECCCccEEE--eCCH
Confidence 9999999999999999754 3567888999999999987532 124566778888887776555 6653
Q ss_pred -------CCEEEEcC--CCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhc
Q 013914 364 -------GDTVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN 425 (434)
Q Consensus 364 -------~~~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~ 425 (434)
+..+.... ..+. ..++.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..
T Consensus 391 ~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~ 470 (499)
T PLN02507 391 EEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVG 470 (499)
T ss_pred HHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCc
Confidence 11111111 1110 12457888887 579999999999999885 999999999999998877666
Q ss_pred cCCCccc
Q 013914 426 EGLSFAS 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+++.+
T Consensus 471 ~hPt~~E 477 (499)
T PLN02507 471 IHPSAAE 477 (499)
T ss_pred CCCChHH
Confidence 6666654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=391.35 Aligned_cols=393 Identities=21% Similarity=0.273 Sum_probs=289.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccCC-----
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS----- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 72 (434)
+|||+||||||||++||..++++|.+ |+|+|++...+ ...|.+++.++..... ...+.+......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAK---VAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 59999999999999999999999987 99999964321 2234445544322111 011111110000
Q ss_pred ------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCC
Q 013914 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 140 (434)
.........+++.+++++.+ ++..+++....+. .+++++.||+||||||++|+.|+ ++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~---i~G~~~- 152 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPN---LPGHEL- 152 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCC---CCCccc-
Confidence 00112234456679999987 7777765433332 45678999999999999998877 465431
Q ss_pred CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCc
Q 013914 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
.. +..++..+. . .+++++|||+|++|+|+|..+.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||
T Consensus 153 -~~---~~~~~~~l~----~-~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (446)
T TIGR01424 153 -GI---TSNEAFHLP----T-LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGI 222 (446)
T ss_pred -ee---chHHhhccc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCC
Confidence 12 223333221 1 4789999999999999999999999999999999988886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEEEec
Q 013914 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVG 296 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~G 296 (434)
++++++++.++...+++ ..+.+.+|+++++|.+++|+|++||++.+ ..++.. ++|+|.||+++||++|||||+|
T Consensus 223 ~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~G 300 (446)
T TIGR01424 223 RIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVG 300 (446)
T ss_pred EEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEee
Confidence 99999999999863334 45667788899999999999999999853 345655 5688999999999999999999
Q ss_pred ccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-------CEEEE
Q 013914 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-------DTVLF 369 (434)
Q Consensus 297 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-------~~~~~ 369 (434)
||++.+ ..+..|.+||+.|+.||++... ....+..+|+.+++.|+++.+ |.++. ..+..
T Consensus 301 D~~~~~----------~l~~~A~~~g~~~a~~i~~~~~--~~~~~~~~p~~if~~p~ia~v--G~te~~a~~~~~~~~~~ 366 (446)
T TIGR01424 301 DVTDRI----------NLTPVAIMEATCFANTEFGNNP--TKFDHDLIATAVFSQPPLGTV--GLTEEEAREKFTGDILV 366 (446)
T ss_pred ccCCCc----------cchhHHHHHHHHHHHHHhcCCC--CccCcCCCCeEEeCCchhEEE--ECCHHHHHhhcCCCEEE
Confidence 999743 4567889999999999987431 124567889888887766655 66531 21111
Q ss_pred cC-----CCc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 370 GD-----NDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 370 ~~-----~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.. ..+ ...+++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+..+..+.+++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 440 (446)
T TIGR01424 367 YRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAE 440 (446)
T ss_pred EEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHH
Confidence 11 110 123567898887 579999999999999885 9999999999999988777767776654
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=400.15 Aligned_cols=389 Identities=20% Similarity=0.336 Sum_probs=308.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++|||||+|+||+.+|..|++++. +..+|+||++++..+|.++.++..+... ....+ .....++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l-----------~~~~~~~~~ 70 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEEL-----------SLVREGFYE 70 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHc-----------cCCCHHHHH
Confidence 3589999999999999999987642 3457999999999999988776543321 11111 234567888
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.++.|+.++++.+.|.+.++.++.||+||||||+.|+.|+ ++|.+..+++.+++++++..+.+.+. .+
T Consensus 71 ~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~l~~~~~--~~ 145 (847)
T PRK14989 71 KHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPP---IKGSETQDCFVYRTIEDLNAIEACAR--RS 145 (847)
T ss_pred hCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHHh--cC
Confidence 89999999989999999999999888889999999999999999888 67877788999999999999887765 47
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.+++++..++++..+.+.+.+++.||++++++.++++..+.++....+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~ 225 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMR 225 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEE
Confidence 89999999999999999999999999999999999887789999999999999999999999999999763334556788
Q ss_pred eCCCcEEECCEEEEcccCccChhhhh-ccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 321 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 321 (434)
+.+|+++++|+|++|+|++||+++++ .++.. ++|+|.||++|||++|+|||+|||+......+ .++..|..+
T Consensus 226 ~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~ 299 (847)
T PRK14989 226 FADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF------GLVAPGYKM 299 (847)
T ss_pred ECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCccc------ccHHHHHHH
Confidence 89999999999999999999999874 46766 67899999999999999999999998765422 477889999
Q ss_pred HHHHHHHHhccCCCCcccCCCC-CCeeEEeccCceeEEeecCCCC-----EEEEcCCCcccCCCcEEEEEE--eCCEEEE
Q 013914 322 AEQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD-----TVLFGDNDLASATHKFGTYWI--KDGKVVG 393 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~ilG 393 (434)
|++||.||++.. ..|.. ......+.+++.+..+|...+. .+.+.+. ....|.|+++ ++++|||
T Consensus 300 a~vaa~~i~g~~-----~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~~~~~~~~~~----~~~~y~Klv~~~~~~~LlG 370 (847)
T PRK14989 300 AQVAVDHLLGSE-----NAFEGADLSAKLKLLGVDVGGIGDAHGRTPGARSYVYLDE----SKEIYKRLIVSEDNKTLLG 370 (847)
T ss_pred HHHHHHHhcCCC-----cCCCCcccceEEEECCcceEecccccCCCCCceeEEEEcC----CCCEEEEEEEECCCCEEEE
Confidence 999999998753 22332 2223455677777777744332 1122111 1467888887 4679999
Q ss_pred EEEecCCHHHHHHHHHHHHcCCCCCC-hhhhhcc
Q 013914 394 VFLESGTPEENKAIAKVARVQPSVES-LDVLKNE 426 (434)
Q Consensus 394 ~~~~g~~~~~~~~~~~~i~~~~~~~~-~~~l~~~ 426 (434)
++++|+. .+...+...+..++++.+ .+.|..+
T Consensus 371 a~lvGd~-~~~~~l~~~~~~~~~l~~~~~~l~~~ 403 (847)
T PRK14989 371 AVLVGDT-SDYGNLLQLVLNAIELPENPDSLILP 403 (847)
T ss_pred EEEECCH-HHHHHHHHHHHcCCCCccchhheecC
Confidence 9999965 444445555556666643 4454443
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=392.04 Aligned_cols=395 Identities=21% Similarity=0.247 Sum_probs=288.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CC-CCCcccccCC--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----AR-LPGFHVCVGS-- 72 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~-- 72 (434)
+.+|||+||||||||++||..|+++|.+ |+|||+....+ ...|.+++.++..... .. .+.+......
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~---V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAK---VALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENK 78 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCC
Confidence 4579999999999999999999999987 99999974321 1223334433322110 00 0000000000
Q ss_pred ---------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC
Q 013914 73 ---------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 137 (434)
Q Consensus 73 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~ 137 (434)
.........+.+.+++++.+ .+..++ .+++.+ +++++.||+||||||++|+.|+ ++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~--~~~v~~-~g~~~~~d~lViATGs~p~~p~---i~g~ 151 (450)
T PRK06116 79 FDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVD--AHTVEV-NGERYTADHILIATGGRPSIPD---IPGA 151 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEE-CCEEEEeCEEEEecCCCCCCCC---CCCc
Confidence 00011223345679999997 555554 467777 6678999999999999998877 4654
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+ .+++ ..+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++
T Consensus 152 ~--~~~~---~~~~~~~~----~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~ 220 (450)
T PRK06116 152 E--YGIT---SDGFFALE----E-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK 220 (450)
T ss_pred c--eeEc---hhHhhCcc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH
Confidence 3 2222 22222211 1 4789999999999999999999999999999999988875 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
.||+++++++|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++||||
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Iy 299 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIY 299 (450)
T ss_pred CCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEE
Confidence 999999999999998744443 35777888899999999999999999843 345666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------CC-
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GD- 365 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~- 365 (434)
|+|||++.+ ..+..|..||+.||+||++.... ....|..+|+.+++.|+++.+ |+++ .+
T Consensus 300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~if~~p~~a~v--Glte~~a~~~~~~~ 366 (450)
T PRK06116 300 AVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPD-EKLDYSNIPTVVFSHPPIGTV--GLTEEEAREQYGED 366 (450)
T ss_pred EEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCC-CcCCcCCCCeEEeCCCccEEe--eCCHHHHHHhCCCC
Confidence 999998643 46778999999999999874320 125677899888877766655 6543 11
Q ss_pred EEEEcCCCc-----c---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 366 TVLFGDNDL-----A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 366 ~~~~~~~~~-----~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.+.....+. . ..+++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+..+..+.+++.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 367 NVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred cEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 122111111 0 24578899887 479999999999999885 9999999999999988777666666654
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=391.91 Aligned_cols=395 Identities=19% Similarity=0.216 Sum_probs=281.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CC-CCccCccccCCCCC----CCCCCcccccCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YE-RPALSKAYLFPEGT----ARLPGFHVCVGSG 73 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 73 (434)
|+.+|||+||||||||++||..|++.|.+ |+|||+.+..+ .+ .|.+++.++..... .....+.......
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~---V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLE---TVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEP 77 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 44579999999999999999999999987 99999874321 11 23344444321100 0000000000000
Q ss_pred -----------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCC--cEEEcceEEEecCCCcccccCC
Q 013914 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~~~~ 132 (434)
........+++.|++++.+ .+..++ .+++ ...++ .++.||+||||||++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~- 153 (471)
T PRK06467 78 KIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPF- 153 (471)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCC-
Confidence 0001123355679999997 444343 4444 33455 479999999999999975443
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
+++ +..++++ ..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 154 -~~~-~~~~v~~---~~~~~~~~----~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~ 222 (471)
T PRK06467 154 -IPH-DDPRIWD---STDALELK----E-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFT 222 (471)
T ss_pred -CCC-CCCcEEC---hHHhhccc----c-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHH
Confidence 333 3344443 33333322 1 4789999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDF 284 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~ 284 (434)
+.|++. |++++++.+++++..+++ ..+.+.+ + +++++|.|++|+|++||++++ ..++.. ++|+|.||++
T Consensus 223 ~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~ 299 (471)
T PRK06467 223 KRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ 299 (471)
T ss_pred HHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC
Confidence 999988 999999999999863333 3454433 2 469999999999999999854 335666 6788999999
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV- 363 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~- 363 (434)
+||++|+|||+|||++.+ ..+..|.++|+.|+.||++... ...+..+|+..+..++ +..+|+++
T Consensus 300 ~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~---~~~~~~~p~~~~~~p~--ia~vGlte~ 364 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH---YFDPKVIPSIAYTEPE--VAWVGLTEK 364 (471)
T ss_pred cccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCc--eeEEECCHH
Confidence 999999999999999754 4577899999999999987532 2556678887655444 55557764
Q ss_pred -----CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccC
Q 013914 364 -----GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG 427 (434)
Q Consensus 364 -----~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 427 (434)
|..+.. ....+. ...++|+|+++ ++++|||+|++|+++.|+ +.++.||++++|++|+..+..+.
T Consensus 365 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~h 444 (471)
T PRK06467 365 EAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAH 444 (471)
T ss_pred HHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCC
Confidence 211111 111111 24567898887 479999999999999885 99999999999999888877777
Q ss_pred CCccc
Q 013914 428 LSFAS 432 (434)
Q Consensus 428 ~~~~~ 432 (434)
++|.+
T Consensus 445 Pt~~e 449 (471)
T PRK06467 445 PTLHE 449 (471)
T ss_pred CChHH
Confidence 77654
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=389.14 Aligned_cols=403 Identities=18% Similarity=0.207 Sum_probs=288.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCCCC----CCCcccccCC----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTAR----LPGFHVCVGS---- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---- 72 (434)
.+|||+|||||+||++||..+++.|.+ |+|||++... ....|.++|.++....... ...+......
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~---ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAK---VALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCe---EEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 368999999999999999999999987 9999997532 2334555666655432211 0000000000
Q ss_pred ------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEE----------------------------ccCCcE
Q 013914 73 ------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLL----------------------------SATGLI 112 (434)
Q Consensus 73 ------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~----------------------------~~~~~~ 112 (434)
.......+.+++.|++++.+...+. +.++|. ..++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~---~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLL---SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEe---cCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0011223345567999999854321 223321 245668
Q ss_pred EEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013914 113 FKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 113 ~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv 192 (434)
++||++|||||++|+.|+ ++|.+ .++ +.+++..+ . .+++++|||+|++|+|+|..|.+.|.+|+++
T Consensus 201 i~ad~lVIATGS~P~~P~---IpG~~--~v~---ts~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli 266 (561)
T PTZ00058 201 IEGKNILIAVGNKPIFPD---VKGKE--FTI---SSDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIF 266 (561)
T ss_pred EECCEEEEecCCCCCCCC---CCCce--eEE---EHHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEE
Confidence 999999999999998887 56643 233 23333222 1 3789999999999999999999999999999
Q ss_pred ccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCccChhhhhc-
Q 013914 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRPLISLFKG- 270 (434)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi~a~G~~p~~~~~~~- 270 (434)
++.+++++. +++++.+.+.+.|++.||++++++.+.+++..+++.+ .+.+.+ ++++++|.|++|+|++||++.+..
T Consensus 267 ~~~~~il~~-~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~ 344 (561)
T PTZ00058 267 ARGNRLLRK-FDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLK 344 (561)
T ss_pred Eeccccccc-CCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCcc
Confidence 999998875 7999999999999999999999999999986433333 334434 457999999999999999997743
Q ss_pred --cccccCCcEEeCCCCCCCCCcEEEeccccccccc-----------------------ccCcce-ecccHHHHHHHHHH
Q 013914 271 --QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK-----------------------LYREMR-RVEHVDHARKSAEQ 324 (434)
Q Consensus 271 --~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~ 324 (434)
++..++|+|.||+++||++|||||+|||++.+.. ..+.+. ..+++..|..||+.
T Consensus 345 ~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~ 424 (561)
T PTZ00058 345 ALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRL 424 (561)
T ss_pred ccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHH
Confidence 2333678999999999999999999999984321 222332 35788899999999
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------C-CEEEEcCCC-----c-------ccCCCcEEEE
Q 013914 325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-DTVLFGDND-----L-------ASATHKFGTY 384 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~~~~~~-----~-------~~~~~~~~~~ 384 (434)
++.||++.... ...+..+|+.+++.++++.+ |+++ + +.+.....+ . ......++|+
T Consensus 425 aa~ni~g~~~~--~~~~~~ip~~vft~peiA~v--Glte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kl 500 (561)
T PTZ00058 425 LADRLFGPFSR--TTNYKLIPSVIFSHPPIGTI--GLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKL 500 (561)
T ss_pred HHHHHhCCCCc--ccCCCCCCeEEeCCchheee--eCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEE
Confidence 99999875321 24567789887776666655 6654 2 112111111 0 1124578888
Q ss_pred EE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 385 WI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 385 ~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+++++
T Consensus 501 i~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e 551 (561)
T PTZ00058 501 VCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551 (561)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHH
Confidence 77 579999999999999885 9999999999999987777666666654
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=385.64 Aligned_cols=397 Identities=19% Similarity=0.228 Sum_probs=286.6
Q ss_pred CC-CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC--------C--CCC---
Q 013914 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG--------T--ARL--- 63 (434)
Q Consensus 1 M~-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~--------~--~~~--- 63 (434)
|| .+.|||+|||||+||++||..|++.|.+ |+|||++...+ ...|.+++.++.... . ..+
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~---v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 55 3579999999999999999999999987 99999975321 122333443321110 0 000
Q ss_pred -CCcccc--cCC--C----CCC-CChhhHhh-cCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCccccc
Q 013914 64 -PGFHVC--VGS--G----GER-LLPEWYKE-KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 64 -~~~~~~--~~~--~----~~~-~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~ 130 (434)
+.+.+. ... . ... .....++. .+++++.+ ++..++.+...|.+.++ .+++||+||||||++|+.|+
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 000000 000 0 000 01122333 37999997 78888888778887776 37999999999999999887
Q ss_pred CCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHH
Q 013914 131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 210 (434)
Q Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~ 210 (434)
++|.+...+++. .+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +++++. +++++.+.
T Consensus 157 ---i~G~~~~~~~~~---~~~~~l~----~-~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~ 223 (468)
T PRK14694 157 ---VPGLAETPYLTS---TSALELD----H-IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEA 223 (468)
T ss_pred ---CCCCCCCceEcc---hhhhchh----c-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHH
Confidence 566543334332 2222221 1 478999999999999999999999999999986 466665 78999999
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccccCCcEEeCCCCCC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT 287 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t 287 (434)
+.+.+++.||++++++.+.+++.+ +....+.+.++ ++++|.|++|+|++||++++. .++..++|+|.||+++||
T Consensus 224 l~~~l~~~GI~v~~~~~v~~i~~~--~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~T 300 (468)
T PRK14694 224 IEAAFRREGIEVLKQTQASEVDYN--GREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQT 300 (468)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCccc
Confidence 999999999999999999999862 33334555554 799999999999999998752 345556788999999999
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|+|||+|||+..+ ..+..|..+|+.||.||++... ...+..+|.+.++.+++ ..+|.++
T Consensus 301 s~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~---~~~~~~~p~~~~~~p~~--a~vGlte~~a~ 365 (468)
T PRK14694 301 TVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA---SLDLSAMPEVIFTDPQV--ATVGLSEAEAQ 365 (468)
T ss_pred CCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccccCCCCeEEECCCCe--EEeeCCHHHHH
Confidence 999999999999765 3466788899999999986532 25566788877665555 4557664
Q ss_pred --CCEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
|..+ .+....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.+++
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 445 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTM 445 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCch
Confidence 2111 11111111 23567899887 579999999999998885 99999999999999887777777766
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
++
T Consensus 446 ~e 447 (468)
T PRK14694 446 VE 447 (468)
T ss_pred HH
Confidence 54
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=385.33 Aligned_cols=395 Identities=21% Similarity=0.258 Sum_probs=289.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCccccc------CC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCV------GS 72 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~ 72 (434)
+|++|||+|++|+.+|..++++|.+ |+|||++...+ ...|.++|.++..... .....+.... ..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~---v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGAD---VTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 4899999999999999999999887 99999976422 2234445555432100 0000000000 00
Q ss_pred --------------CCCCCChhhHhhcCcEEEcCCeeEEEE--CCCCE--EEccCCc--EEEcceEEEecCCCcccccCC
Q 013914 73 --------------GGERLLPEWYKEKGIELILSTEIVRAD--IASKT--LLSATGL--IFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~--~~~~~--v~~~~~~--~~~~d~lvlAtG~~~~~~~~~ 132 (434)
.......+.+++.+++++.+ .+..++ .+.++ +...+|. ++.||+||+|||++|+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~- 156 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT- 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-
Confidence 00112334566679999998 555533 34444 4445564 69999999999999986653
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
++.+...+++..+..+... .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.
T Consensus 157 --~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~ 225 (466)
T PRK07845 157 --AEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLE 225 (466)
T ss_pred --CCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHH
Confidence 3333455666554433221 3689999999999999999999999999999999999987 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 288 (434)
+.|+++||++++++++.+++.++++ ..+.+.+|+++++|.|++++|++||++.+ +.++.+ ++|+|.||+++||+
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts 303 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTS 303 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccC
Confidence 9999999999999999999763333 45677788899999999999999999853 446666 56889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-----
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----- 363 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----- 363 (434)
+|||||+|||++.+ +++..|..||+.|+.|+++... .+..+..+|+.+++.++++.+ |.++
T Consensus 304 ~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~vf~~p~~a~v--Glte~~a~~ 369 (466)
T PRK07845 304 VPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAV--SPLRLKTVASNVFTRPEIATV--GVSQAAIDS 369 (466)
T ss_pred CCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEeCCCcceee--cCCHHHHHh
Confidence 99999999999754 5678899999999999997531 124567788877776665555 6654
Q ss_pred -CCEEE-----EcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 364 -GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 364 -~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+..+. +.+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+..+.++|.
T Consensus 370 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 370 GEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred CCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 21111 2221111 23568898887 579999999999999885 999999999999998887766666665
Q ss_pred c
Q 013914 432 S 432 (434)
Q Consensus 432 ~ 432 (434)
+
T Consensus 450 e 450 (466)
T PRK07845 450 G 450 (466)
T ss_pred H
Confidence 4
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=386.16 Aligned_cols=394 Identities=20% Similarity=0.243 Sum_probs=285.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCC--------C-C---CCCCCCccCccccCCCCC----CCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKE--------A-V---APYERPALSKAYLFPEGT----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~--------~-~---~~~~~~~~~~~~~~~~~~----~~~~~~ 66 (434)
++|||+|||||++|..||..++++ |.+ |+|||++ . . +....|.++|.++..... .....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~---V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKR---VAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCE---EEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 579999999999999999999996 777 9999973 1 1 123345566665543311 011111
Q ss_pred ccccC--C---C--------------CCCCChhhHhh-cCcEEEcCCeeEEEECCCCEEEccC--------CcEEEcceE
Q 013914 67 HVCVG--S---G--------------GERLLPEWYKE-KGIELILSTEIVRADIASKTLLSAT--------GLIFKYQIL 118 (434)
Q Consensus 67 ~~~~~--~---~--------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~--------~~~~~~d~l 118 (434)
..... . + ........++. .+++++.+... ..+.++|.+.+ .+++.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~---f~~~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGA---LEDKNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEE---EccCCEEEEeeccCCCCCcceEEECCEE
Confidence 11000 0 0 00111223444 48999998432 23566665531 247999999
Q ss_pred EEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Q 013914 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE 195 (434)
Q Consensus 119 vlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~ 195 (434)
|||||++|..|+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..+..+ |.+|+++++.
T Consensus 156 IIATGs~p~~p~---i~G~~--~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 156 LLATGSWPQMLG---IPGIE--HCI---SSNEAFYLD-----EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred EEecCCCCCCCC---CCChh--hee---chhhhhccc-----cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 999999998877 56643 222 333333221 1478999999999999999877665 9999999999
Q ss_pred CccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccc
Q 013914 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQV 272 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~ 272 (434)
+++++. +++++.+.+.+.|++.||++++++.++++...+++ ...+.+.+|+++++|.+++|+|++||++.+. .++
T Consensus 223 ~~il~~-~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl 300 (486)
T TIGR01423 223 NMILRG-FDSTLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGV 300 (486)
T ss_pred Cccccc-cCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCc
Confidence 999886 89999999999999999999999999999863333 3456777888999999999999999998652 456
Q ss_pred cc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEec
Q 013914 273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 351 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 351 (434)
.. ++|+|.||+++||++|||||+|||++.+ .....|..||+.+++||++... ....+..+|+.+++.
T Consensus 301 ~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~--~~~~~~~vp~~vft~ 368 (486)
T TIGR01423 301 ELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKP--RKTDHTRVASAVFSI 368 (486)
T ss_pred eECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCC--cccCCCCCCEEEeCC
Confidence 66 6788999999999999999999999754 3566789999999999987431 124556789988888
Q ss_pred cCceeEEeecCCCC------EEEEc-----CCCcc--c--CCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHc
Q 013914 352 FDLSWQFYGDNVGD------TVLFG-----DNDLA--S--ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARV 413 (434)
Q Consensus 352 ~~~~~~~~g~~~~~------~~~~~-----~~~~~--~--~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~ 413 (434)
|+++.+ |+++.+ .+... ..... . ..+.|+|+++ ++++|||+|++|+++.++ +.++.||+.
T Consensus 369 peia~v--Glte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~ 446 (486)
T TIGR01423 369 PPIGTC--GLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKL 446 (486)
T ss_pred CceEEe--eCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 775555 766421 11111 00000 1 1246888887 579999999999999885 999999999
Q ss_pred CCCCCChhhhhccCCCccc
Q 013914 414 QPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 414 ~~~~~~~~~l~~~~~~~~~ 432 (434)
++|++|+..+..+.+++++
T Consensus 447 ~~t~~dl~~~~~~hPt~sE 465 (486)
T TIGR01423 447 NAKISDFYNTIGVHPTSAE 465 (486)
T ss_pred CCCHHHHhhcccCCCCcHH
Confidence 9999988888777777764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=381.71 Aligned_cols=392 Identities=18% Similarity=0.232 Sum_probs=284.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCCC----CCCCcccccC---C--
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGTA----RLPGFHVCVG---S-- 72 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~-- 72 (434)
+||++|||+||+|.+||.. +.|.+ |+|||++... .+..|.++|.++...... ..+.+..... .
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 4899999999999988865 35776 9999997542 233455666544322110 0000000000 0
Q ss_pred ------------CCCC-CChhh-HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 73 ------------GGER-LLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 73 ------------~~~~-~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
.... ..... ++..|++++.+.... + +.++|.+.+++++.||++|||||++|+.|+ +++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V~v~~g~~~~~d~lViATGs~p~~p~---i~g~~ 149 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTLRTGDGEEITADQVVIAAGSRPVIPP---VIADS 149 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEEEECCCCEEEeCEEEEcCCCCCCCCC---CCCcC
Confidence 0001 12233 566789999984433 3 678888887778999999999999998887 45544
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++ +.+++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+ +.
T Consensus 150 ~~~~~---~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~~ 219 (451)
T PRK07846 150 GVRYH---TSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-SK 219 (451)
T ss_pred CccEE---chHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-hc
Confidence 33333 3444443322 4789999999999999999999999999999999999875 7999998887755 56
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCcEEE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya 294 (434)
||++++++++++++.. ++ ...+.+.+|+++++|.|++|+|++||++++. .++.. ++|+|.||+++||++|||||
T Consensus 220 ~v~i~~~~~v~~i~~~-~~-~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA 297 (451)
T PRK07846 220 RWDVRLGRNVVGVSQD-GS-GVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFA 297 (451)
T ss_pred CeEEEeCCEEEEEEEc-CC-EEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEE
Confidence 7999999999999863 22 2456777888999999999999999999753 35666 67889999999999999999
Q ss_pred ecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE
Q 013914 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL 368 (434)
Q Consensus 295 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~ 368 (434)
+|||++.+ +....|.+||+.+++||++.... ....+..+|+.+++.++++.+ |.++ |..+.
T Consensus 298 ~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~if~~p~ia~v--Glte~~a~~~g~~~~ 364 (451)
T PRK07846 298 LGDVSSPY----------QLKHVANHEARVVQHNLLHPDDL-IASDHRFVPAAVFTHPQIASV--GLTENEARAAGLDIT 364 (451)
T ss_pred EeecCCCc----------cChhHHHHHHHHHHHHHcCCCCc-cccCCCCCCeEEECCCCcEeE--eCCHHHHHhcCCCEE
Confidence 99999864 34567889999999999865211 124667789888776665555 7664 22121
Q ss_pred E-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh-ccCCCccc
Q 013914 369 F-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK-NEGLSFAS 432 (434)
Q Consensus 369 ~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~-~~~~~~~~ 432 (434)
. .+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+. .+.++|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 365 VKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred EEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHH
Confidence 1 121111 23567888887 579999999999999885 99999999999999877644 46666654
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=384.36 Aligned_cols=395 Identities=18% Similarity=0.222 Sum_probs=282.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CC----CCCCccCccccCCCCCCCCCCcccccCC-C----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-AP----YERPALSKAYLFPEGTARLPGFHVCVGS-G---- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 73 (434)
+.|||+|||||+||++||.+|+++|.+ |+|||+.+. .+ ...|..++.++..... ...|...... .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~---V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~--~~~~~~~~~~~~~~~~ 76 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWR---VALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ--HTDFVRAIQRKNEVVN 76 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCe---EEEEcCCCCccceeEeeccccchHHHHHHhcc--CCCHHHHHHHHHHHHH
Confidence 469999999999999999999999987 999999743 11 1112223333222110 0111000000 0
Q ss_pred -CC-CCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCCcccccCCCCCCCC-CCCeEEecCHH
Q 013914 74 -GE-RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREID 149 (434)
Q Consensus 74 -~~-~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~~ 149 (434)
.. .......+..+++++.+ .+..++.....+...++. ++.||+||||||++|..|+ ++|.+ .+++++...
T Consensus 77 ~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~---i~G~~~~~~v~~~~~-- 150 (441)
T PRK08010 77 FLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPP---IPGITTTPGVYDSTG-- 150 (441)
T ss_pred HHHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCC---CCCccCCCCEEChhH--
Confidence 00 00112222348999887 676676655556556664 6999999999999998887 56643 345554332
Q ss_pred HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 150 ~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
...+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++++
T Consensus 151 -~~~~----~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~ 223 (441)
T PRK08010 151 -LLNL----K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVE 223 (441)
T ss_pred -hhcc----c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 2221 1 14789999999999999999999999999999999999887 689999999999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccc
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~ 305 (434)
+++.+ ++. ..+.++++ ++++|.+++|+|++||++++ ..++.+ ++|+|.||+++||++|||||+|||++.+.
T Consensus 224 ~i~~~-~~~-v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~-- 298 (441)
T PRK08010 224 RISHH-ENQ-VQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ-- 298 (441)
T ss_pred EEEEc-CCE-EEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc--
Confidence 99863 232 34555555 68999999999999999854 345666 56889999999999999999999998653
Q ss_pred cCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE-----EcCCCc
Q 013914 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDNDL 374 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~~ 374 (434)
....|..+|+.++.|+++... .....+..+|+..++.++++ .+|.++ |..+. +.+..+
T Consensus 299 --------~~~~a~~~~~~~~~~~~g~~~-~~~~~~~~~p~~~~~~p~ia--~vGlte~~a~~~g~~~~~~~~~~~~~~~ 367 (441)
T PRK08010 299 --------FTYISLDDYRIVRDELLGEGK-RSTDDRKNVPYSVFMTPPLS--RVGMTEEQARESGADIQVVTLPVAAIPR 367 (441)
T ss_pred --------chhHHHHHHHHHHHHHcCCCC-cccCccCCCCEEEECCCCce--eeeCCHHHHHHcCCCeEEEEEecCcChh
Confidence 445577899999999986421 11235566887766555555 447664 22111 122222
Q ss_pred c---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 375 A---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 375 ~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+.....+.++|++
T Consensus 368 ~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 431 (441)
T PRK08010 368 ARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSE 431 (441)
T ss_pred hhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHH
Confidence 1 23466888887 579999999999999885 9999999999999988766666666654
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=392.16 Aligned_cols=382 Identities=24% Similarity=0.369 Sum_probs=311.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcCc
Q 013914 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
|||||+|+||+++|.+|++.+.+..+|+||++++..+|.++.++..+........+ .....+++++.++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l-----------~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDI-----------TLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHc-----------cCCCHHHHHHCCC
Confidence 68999999999999999987644567999999999999988776533211111111 1345678888999
Q ss_pred EEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEE
Q 013914 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ 167 (434)
+++.++.|+.|+++.++|.+.++.++.||+||||||+.|+.|+ +||.+.++++++++++++..+++.+. .+++++
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~---ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vv 144 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILP---IPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAA 144 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEE
Confidence 9999999999999999999999989999999999999999887 68877788999999999998887765 478999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 247 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g 247 (434)
|||+|++|+|+|..|.+.|.+|+++++.++++++.+++...+.+.+.+++.||++++++.++++.. ++.+..+.+.+|
T Consensus 145 VVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG 222 (785)
T TIGR02374 145 VIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDG 222 (785)
T ss_pred EECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCC
Confidence 999999999999999999999999999999988778999999999999999999999999999975 456678889999
Q ss_pred cEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHH
Q 013914 248 RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAV 326 (434)
Q Consensus 248 ~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 326 (434)
+++++|+||+++|.+|+++++.. ++... ++|.||++|||++|+|||+|||+..+...+ ..+..|..||+.+|
T Consensus 223 ~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA 295 (785)
T TIGR02374 223 SSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLA 295 (785)
T ss_pred CEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHH
Confidence 99999999999999999998754 55554 789999999999999999999998765322 46788999999999
Q ss_pred HHHhccCCCCcccCCCCC-CeeEEeccCceeEEeecCCCC----EEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 327 KTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGD----TVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 327 ~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
.||++... .+|... .....+.+++.+...|..... .+.+.+.. ...|.++++++++|+|++++|+ .
T Consensus 296 ~ni~g~~~----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~~~~~~d~~----~~~y~kl~~~~~rLlGavlvgd-~ 366 (785)
T TIGR02374 296 DHICGVEC----EEYEGSDLSAKLKLLGVDVWSAGDAQETERTTSIKIYDEQ----KGIYKKLVLSDDKLLGAVLFGD-T 366 (785)
T ss_pred HHhcCCCC----cCCCCCccceEEEECCcceEecccCCCCCCcEEEEEEcCC----CCEEEEEEEECCEEEEEEEECC-H
Confidence 99987531 234332 334566788888888864321 22222222 4568888999999999999995 4
Q ss_pred HHHHHHHHHHHcCCCCCChhhh
Q 013914 402 EENKAIAKVARVQPSVESLDVL 423 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~l 423 (434)
.+...+..++.++..+.+...|
T Consensus 367 ~~~~~L~~li~~~~~l~~~~~l 388 (785)
T TIGR02374 367 SDYGRLLDMVLKQADISEDPAI 388 (785)
T ss_pred HHHHHHHHHHHcCCCCCcChhh
Confidence 5778888899998877653233
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-49 Score=386.24 Aligned_cols=392 Identities=20% Similarity=0.235 Sum_probs=286.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC----------CC---CCCCCCccCccccCCCCC----CCCCCcc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE----------AV---APYERPALSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~----------~~---~~~~~~~~~~~~~~~~~~----~~~~~~~ 67 (434)
+|||+|||+|++|+.||..++++|.+ |+|||+. .. +....|.++|.++..... .....+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~---V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGAS---AAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 58999999999999999999999987 9999962 11 223334455555432211 0011111
Q ss_pred cccCC------------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 68 VCVGS------------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 68 ~~~~~------------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
..... .....+...+++.|++++.+ .+..+++ +++.+ +|+++.||+||||||++|..|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 11000 00112233455678999997 6666654 45655 567899999999999999888
Q ss_pred cCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHH
Q 013914 130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~ 209 (434)
+ ++|.+ .++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+
T Consensus 232 ~---IpG~~--~v~---~~~~~l~~~-----~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~ 297 (558)
T PLN02546 232 D---IPGIE--HAI---DSDAALDLP-----SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRD 297 (558)
T ss_pred C---CCChh--hcc---CHHHHHhcc-----ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHH
Confidence 7 56543 222 333333221 14789999999999999999999999999999999998875 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCC
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF 285 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~ 285 (434)
.+.+.|++.||++++++.+.++....++.+ .+.+.+++...+|.|++++|++||++++ ..++.. ++|+|.||+++
T Consensus 298 ~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l 376 (558)
T PLN02546 298 FVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYS 376 (558)
T ss_pred HHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCc
Confidence 999999999999999999999976444433 4566666555589999999999999853 346666 56889999999
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD 365 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~ 365 (434)
||++|||||+|||++.+ .++..|..||+.+|.||++.... ...|..+|+.+++.++++.+ |+++.+
T Consensus 377 ~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~--~~~~~~vp~~vft~Peia~V--Glte~e 442 (558)
T PLN02546 377 RTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPT--KPDYRAVPSAVFSQPPIGQV--GLTEEQ 442 (558)
T ss_pred eeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--cCCCCCCCEEEeCCchHhhc--cCCHHH
Confidence 99999999999999754 45678899999999999975321 24677899887777766655 655421
Q ss_pred ------EEEEcC--CCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 366 ------TVLFGD--NDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 366 ------~~~~~~--~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
.+.... .... ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+
T Consensus 443 A~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hP 522 (558)
T PLN02546 443 AIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHP 522 (558)
T ss_pred HHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 111111 1100 13467898877 579999999999999885 999999999999998877766666
Q ss_pred Cccc
Q 013914 429 SFAS 432 (434)
Q Consensus 429 ~~~~ 432 (434)
++++
T Consensus 523 T~~E 526 (558)
T PLN02546 523 TAAE 526 (558)
T ss_pred ChHH
Confidence 6654
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=382.82 Aligned_cols=396 Identities=25% Similarity=0.321 Sum_probs=282.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC----CCCCCcccccCC---C
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT----ARLPGFHVCVGS---G 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~ 73 (434)
..|||+||||||||++||..|+++|.+ |+|||++...+ ...|.+++.++..... .....+...... .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~---V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLK---VAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCc---EEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 469999999999999999999999987 99999986322 2233444443322211 000000000000 0
Q ss_pred --------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC-CcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 --------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-GLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
....+...+++.+++++.+ .+..+++...++...+ +.++.||+||+|||++|..|+. ++ .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg--~~-~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPG--IE-ID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCC--CC-CC
Confidence 0011223455679999997 5555555444444323 3679999999999999975432 21 11
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...+++ ..++..+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 156 ~~~v~~---~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~ 226 (462)
T PRK06416 156 GRVIWT---SDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKR 226 (462)
T ss_pred CCeEEc---chHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 122333 333333221 4689999999999999999999999999999999999886 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hccccccCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~i 292 (434)
||++++++++++++.+++ ...+.+.+| +++++|.+++|+|++|+++++ ..++..++|++.||+++||++|+|
T Consensus 227 gV~i~~~~~V~~i~~~~~--~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 227 GIKIKTGAKAKKVEQTDD--GVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNI 304 (462)
T ss_pred CCEEEeCCEEEEEEEeCC--EEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCE
Confidence 999999999999987332 234566555 679999999999999999875 345555678899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC------CE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------DT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------~~ 366 (434)
||+|||+..+ ..+..|..||+.+|.||++... ..++..+|.+.. ++..+..+|.++. ..
T Consensus 305 yAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~---~~~~~~~~~~~~--~~~~~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 305 YAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPH---PIDYRGIPAVTY--THPEVASVGLTEAKAKEEGFD 369 (462)
T ss_pred EEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEE--CCCceEEEeCCHHHHHhcCCC
Confidence 9999999743 4678899999999999997431 233555666555 4455566677642 21
Q ss_pred EEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+.. ....+. ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+..+.++|++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 446 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSE 446 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHH
Confidence 111 111111 24567888877 589999999999999885 9999999999999988887666776654
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=361.85 Aligned_cols=361 Identities=21% Similarity=0.324 Sum_probs=286.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||+||+++|..|++.+ ++.+|+||++++..+|.+|.++..+........+. .....+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~-~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~ 71 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQD-AHIPITLITADSGDEYNKPDLSHVFSQGQRADDLT----------RQSAGEFAEQF 71 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhC-cCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhh----------cCCHHHHHHhC
Confidence 58999999999999999999875 35789999999988898887655443211111110 11234667788
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
+++++.++.|+.++++.+.+.+ ++.++.||+||+|||+.|+.|+ ++|.+. +++++++.++..+...+. .+++
T Consensus 72 gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~---i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~ 143 (377)
T PRK04965 72 NLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPP---IPGREL--MLTLNSQQEYRAAETQLR--DAQR 143 (377)
T ss_pred CCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCC---CCCCce--EEEECCHHHHHHHHHHhh--cCCe
Confidence 9999998899999999888876 5668999999999999998877 576543 888889888887777665 4789
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++++++..+ +....+.+.
T Consensus 144 vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~ 221 (377)
T PRK04965 144 VLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSGIRATLD 221 (377)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCEEEEEEc
Confidence 999999999999999999999999999999999887778999999999999999999999999999863 223467888
Q ss_pred CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 246 ~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
+|+++++|.+|+|+|.+|++++++. ++..++ +|.||+++||++|||||+|||+..... ..+.+..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCc------eeehHHHHHHHHHH
Confidence 9999999999999999999988754 555554 499999999999999999999986532 12567778999999
Q ss_pred HHHHHhccCCCCcccCCCCCCe-eEEeccCceeEEeecCCCCE--EEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 325 AVKTIMATEGGKTVTGYDYLPY-FYSRAFDLSWQFYGDNVGDT--VLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
+|+||++.. ..|...+. ...+.+++.+..+|...+.. ....+. ....|.++++++|+|+|+.++|+..
T Consensus 295 ~a~n~~g~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 295 LAKNLLGQN-----TPLKLPAMLVKVKTPELPLQLAGETQRQDLRWQINAE----SQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred HHHHhcCCC-----cccccCCccEEEecCceeeEECCCCCCCCceEEEEeC----CCCeEEEEEccCCcEEEEEEEChhH
Confidence 999999864 34444333 34567888888888765421 111111 1345778888999999999999865
Q ss_pred HH
Q 013914 402 EE 403 (434)
Q Consensus 402 ~~ 403 (434)
..
T Consensus 366 ~~ 367 (377)
T PRK04965 366 KE 367 (377)
T ss_pred HH
Confidence 43
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=379.88 Aligned_cols=396 Identities=22% Similarity=0.274 Sum_probs=278.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----CCCCCCccCccccCCCCCC------CCCCcccccCC-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV----APYERPALSKAYLFPEGTA------RLPGFHVCVGS- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~- 72 (434)
++|||+||||||||++||.+++++|.+ |+|||+... +....|.++|.++...... ....+......
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~---V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~ 78 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLK---VACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT 78 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence 369999999999999999999999987 999997432 1233355566554432211 01111100000
Q ss_pred -CCC--------------CCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCCc--EEEcceEEEecCCCcccccCCC
Q 013914 73 -GGE--------------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGL--IFKYQILVIATGSTVLRLTDFG 133 (434)
Q Consensus 73 -~~~--------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~--~~~~d~lvlAtG~~~~~~~~~~ 133 (434)
... .....++++.+++++.+.. .++. .+++ ...++. ++.||+||||||++|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~~-~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~----- 150 (466)
T PRK06115 79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLDG-VGKVVVKAEDGSETQLEAKDIVIATGSEPTP----- 150 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEcc-CCEEEEEcCCCceEEEEeCEEEEeCCCCCCC-----
Confidence 000 0112234456788888742 3333 3333 334553 69999999999999852
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
+||....+...+ +..++..+ . ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+
T Consensus 151 ipg~~~~~~~~~-~~~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~ 223 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQK 223 (466)
T ss_pred CCCCCCCCCeEE-CHHHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHH
Confidence 344332333222 22333222 1 14799999999999999999999999999999999999987 79999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CC--CcEEECCEEEEcccCccChhhhh---ccccccCCcEEeCCCCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KD--GRTLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDDFFKT 287 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~--g~~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~~~~t 287 (434)
.|++.||++++++++++++..+++....+.. .+ ++++++|.|++|+|++||++.+. .++..+.+++.||+++||
T Consensus 224 ~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~T 303 (466)
T PRK06115 224 ALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRT 303 (466)
T ss_pred HHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeec
Confidence 9999999999999999998633332222222 12 35799999999999999998542 245554445889999999
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV---- 363 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~---- 363 (434)
++|+|||+|||++.+ .+...|.+||+.+++||++... ...+..+|.++++.++++.+ |+++
T Consensus 304 s~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~t~p~ia~v--Glte~~a~ 368 (466)
T PRK06115 304 SVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAG---EVNYGLIPGVIYTRPEVATV--GKTEEQLK 368 (466)
T ss_pred CCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCcccEEe--eCCHHHHH
Confidence 999999999999754 4677889999999999987531 25667889888887766555 6654
Q ss_pred --CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 364 --GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 364 --~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
+..+.. ....+. ....+|+|+++ ++++|||+|++|+++.++ +.++.||+.++|++|+..+..+.+++
T Consensus 369 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~ 448 (466)
T PRK06115 369 AEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTR 448 (466)
T ss_pred HCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCh
Confidence 221211 222111 23567888887 579999999999999885 99999999999999887776666665
Q ss_pred cc
Q 013914 431 AS 432 (434)
Q Consensus 431 ~~ 432 (434)
.+
T Consensus 449 ~e 450 (466)
T PRK06115 449 SE 450 (466)
T ss_pred HH
Confidence 53
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=382.53 Aligned_cols=401 Identities=24% Similarity=0.284 Sum_probs=283.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCCC----CCCCcccccCC--
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA----RLPGFHVCVGS-- 72 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-- 72 (434)
|.+.|||+||||||||++||.+|+++|.+ |+|||++...+ ...|.+++.++...... ....+......
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~---v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 77 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLK---TALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA 77 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 45689999999999999999999999987 99999974321 22234444433221100 00000000000
Q ss_pred -C--------------CCCCChhhHhhcCcEEEcCCeeEEEECC-------CCEEEccCC--cEEEcceEEEecCCCccc
Q 013914 73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIA-------SKTLLSATG--LIFKYQILVIATGSTVLR 128 (434)
Q Consensus 73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-------~~~v~~~~~--~~~~~d~lvlAtG~~~~~ 128 (434)
. ......+.+++.+++++.+ .+..+++. ...+.+.++ .++.||+||||||++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 0 0001123455679999998 67777766 344555565 479999999999999975
Q ss_pred ccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHH
Q 013914 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 208 (434)
Q Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~ 208 (434)
++. ++ .+...+++ ..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.
T Consensus 157 ~p~--~~-~~~~~~~~---~~~~~~~~----~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~ 224 (472)
T PRK05976 157 LPG--LP-FDGEYVIS---SDEALSLE----T-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELS 224 (472)
T ss_pred CCC--CC-CCCceEEc---chHhhCcc----c-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHH
Confidence 542 22 12222332 23333221 1 3789999999999999999999999999999999999886 799999
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhhh---ccccccCCcEEeCC
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLFK---GQVAENKGGIETDD 283 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~~---~~~~~~~g~i~vd~ 283 (434)
+.+.+.+++.||++++++++.+++...++.+..+.+.+|+ ++++|.+++|+|++|+++.+. .++..++|++.||+
T Consensus 225 ~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~ 304 (472)
T PRK05976 225 KEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDD 304 (472)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECC
Confidence 9999999999999999999999974223334444556663 699999999999999987542 23334578899999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
++||+.|+|||+|||+..+ +.+..|..+|+.|+.||.+... ....+...|...+. +..+..+|.++
T Consensus 305 ~l~ts~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~--~p~~a~vG~te 370 (472)
T PRK05976 305 FCQTKERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKP--RPFDYAAIPACCYT--DPEVASVGLTE 370 (472)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCCEEEEC--cCceEEEeCCH
Confidence 9999999999999998643 4677899999999999986431 12334456665544 44555667664
Q ss_pred ------CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 ------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
|..+.. ....+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+
T Consensus 371 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 371 EEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 221211 111111 23567888877 579999999999999885 9999999999999988888777
Q ss_pred CCCccc
Q 013914 427 GLSFAS 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.++|.+
T Consensus 451 hPt~~e 456 (472)
T PRK05976 451 HPTLSE 456 (472)
T ss_pred CCChHH
Confidence 777654
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-49 Score=383.43 Aligned_cols=391 Identities=22% Similarity=0.231 Sum_probs=279.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC------CCC--------CCccc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT------ARL--------PGFHV 68 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~------~~~--------~~~~~ 68 (434)
|||+||||||||++||..|+++|.+ |+|||++...+ ...|.+++.++..... ..+ ..+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGAS---VAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 6999999999999999999999987 99999975422 1123334443321100 000 00000
Q ss_pred ccCC--C----C-CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCCcccccCCCCCCCCCC
Q 013914 69 CVGS--G----G-ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 69 ~~~~--~----~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 140 (434)
.... . . .......+++.+++++.+ .+.. .+.+++.+.++. .+.||+||||||++|+.|+ ++|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~--~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~---i~G~~~~ 151 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARF--KDPKTVKVDLGREVRGAKRFLIATGARPAIPP---IPGLKEA 151 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEE--ccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCC---CCCcccC
Confidence 0000 0 0 011234566779999987 4433 346778776653 6899999999999998887 5665545
Q ss_pred CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCc
Q 013914 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 141 ~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
++++..+ +..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||
T Consensus 152 ~~~~~~~---~~~~~-----~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 152 GYLTSEE---ALALD-----RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGI 222 (463)
T ss_pred ceECchh---hhCcc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCC
Confidence 5554332 22111 13689999999999999999999999999999999999886 799999999999999999
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChh-h-h-hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 221 KIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLIS-L-F-KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~v~~v~~~---~g~~~~~D~vi~a~G~~p~~~-~-~-~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
+++++++|++++.++++ ..+.+. +++++++|.|++|+|++|+++ + + ..++.. ++|+|.||+++||++|+||
T Consensus 223 ~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Vy 300 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIY 300 (463)
T ss_pred EEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEE
Confidence 99999999999873222 334432 235799999999999999998 3 2 345555 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEE
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTV 367 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~ 367 (434)
|+|||+..+ ..+..|..||+.||.||++... ....+..+|...+..++ +..+|.++ |..+
T Consensus 301 AiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~--~~~~~~~~p~~~~~~p~--~a~vGlte~~a~~~g~~~ 366 (463)
T TIGR02053 301 AAGDVTGGL----------QLEYVAAKEGVVAAENALGGAN--AKLDLLVIPRVVFTDPA--VASVGLTEAEAQKAGIEC 366 (463)
T ss_pred EeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCC--CccCcCCCCeEEeccCc--eEEEeCCHHHHHhcCCCe
Confidence 999999853 4678899999999999987521 12445567766555454 45557654 2111
Q ss_pred EE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCc
Q 013914 368 LF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSF 430 (434)
Q Consensus 368 ~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~ 430 (434)
.. ...++. ...++|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+..+..+.+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~ 440 (463)
T TIGR02053 367 DCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTM 440 (463)
T ss_pred EEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCh
Confidence 11 111111 23567888887 479999999999999885 99999999999999777765444443
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=381.02 Aligned_cols=394 Identities=24% Similarity=0.273 Sum_probs=275.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCCC-----CCCCcccccCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGTA-----RLPGFHVCVGS 72 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 72 (434)
|| .+|||+||||||||++||.+|+++|.+ |+|||++...+ ...|.+++.++...... ....+... .
T Consensus 1 ~~-~~~DvvIIG~GpaG~~AA~~aa~~G~~---V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~--~ 74 (466)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLK---TAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS--G 74 (466)
T ss_pred CC-CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC--c
Confidence 55 469999999999999999999999987 99999974321 12233344333221100 00000000 0
Q ss_pred CCCCC------------------ChhhHhhcCcEEEcCCeeEEEECCCCEEEc--cCC--cEEEcceEEEecCCCccccc
Q 013914 73 GGERL------------------LPEWYKEKGIELILSTEIVRADIASKTLLS--ATG--LIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 73 ~~~~~------------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~--~~~~~d~lvlAtG~~~~~~~ 130 (434)
..... ....++..+++.+.+. ..- .+.+++.+ .++ .++.||+||||||++|+.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~-~~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p 151 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGY-GTF--TDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLP 151 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--cCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCC
Confidence 00000 0111223466666652 221 24455433 344 36899999999999997643
Q ss_pred CCCCCCCC-CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHH
Q 013914 131 DFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 131 ~~~~~g~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~ 209 (434)
+.+ ...+++.. +... ....+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+
T Consensus 152 -----g~~~~~~v~~~~---~~~~-----~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~ 217 (466)
T PRK07818 152 -----GTSLSENVVTYE---EQIL-----SRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSK 217 (466)
T ss_pred -----CCCCCCcEEchH---HHhc-----cccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHH
Confidence 322 13344332 2111 1124789999999999999999999999999999999999987 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEe
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIET 281 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~v 281 (434)
.+.+.|+++||+++++++|++++.+ +....+.+. +| +++++|.|++|+|++||++.+ ..++.+ ++|+|.|
T Consensus 218 ~l~~~l~~~gV~i~~~~~v~~i~~~--~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~v 295 (466)
T PRK07818 218 EIAKQYKKLGVKILTGTKVESIDDN--GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAI 295 (466)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEe--CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEee
Confidence 9999999999999999999999862 222334443 66 379999999999999999853 446665 6788999
Q ss_pred CCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeec
Q 013914 282 DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGD 361 (434)
Q Consensus 282 d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~ 361 (434)
|+++||++|+|||+|||+..+ +++..|..||+.||.||++... .....+..+|...++.++++.+ |.
T Consensus 296 d~~~~Ts~p~IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~-~~~~~~~~~p~~~~~~p~~a~v--Gl 362 (466)
T PRK07818 296 DDYMRTNVPHIYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAET-LELGDYRMMPRATFCQPQVASF--GL 362 (466)
T ss_pred CCCcccCCCCEEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCC-CccCccCCCCeEEECCCCeEEE--eC
Confidence 999999999999999999743 5678899999999999987532 1112667788877766655544 76
Q ss_pred CC------CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh
Q 013914 362 NV------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 362 ~~------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~ 424 (434)
++ |..+.. ....+. ....+|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+....
T Consensus 363 te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~ 442 (466)
T PRK07818 363 TEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV 442 (466)
T ss_pred CHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 54 221211 111111 23567888887 579999999999999885 99999999999999888766
Q ss_pred ccCCCccc
Q 013914 425 NEGLSFAS 432 (434)
Q Consensus 425 ~~~~~~~~ 432 (434)
-+.++|++
T Consensus 443 ~~hPt~~e 450 (466)
T PRK07818 443 HTHPTLSE 450 (466)
T ss_pred cCCCchHH
Confidence 66666654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=382.41 Aligned_cols=394 Identities=19% Similarity=0.206 Sum_probs=278.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC------CCC-CCcccccCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT------ARL-PGFHVCVGSG 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~ 73 (434)
.+|||+||||||||++||..|++.|.+ |+|||++... ....|.+++.++..... ..+ .++.......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~---v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGAR---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 469999999999999999999999987 9999998432 12233444543221110 000 0110000000
Q ss_pred CC----------------CCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCC
Q 013914 74 GE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 ~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
.. ......+... +++++.+ .+..++.....|...++. +++||+||||||++|+.|+ +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~---i 249 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPP---I 249 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCC---C
Confidence 00 0111223444 7899987 666666544455555553 6999999999999998887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+...+++ +.+ ... ....+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 250 ~g~~~~~~~~--~~~-~~~-----~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~ 319 (561)
T PRK13748 250 PGLKETPYWT--STE-ALV-----SDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAA 319 (561)
T ss_pred CCCCccceEc--cHH-Hhh-----cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHH
Confidence 6654322322 221 111 1124789999999999999999999999999999985 45555 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++|+|++||++++ ..++.. ++|+|.||+++||++|
T Consensus 320 l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~ 396 (561)
T PRK13748 320 FRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVP 396 (561)
T ss_pred HHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCC
Confidence 99999999999999999863 332 34555555 79999999999999999864 346666 5788999999999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------C
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 364 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 364 (434)
||||+|||++.+ .....|..+|+.|+.||++.. ...++...|...+..+ .+..+|.++ |
T Consensus 397 ~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~p--~~a~vGlte~~a~~~g 461 (561)
T PRK13748 397 HIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTAMPAVVFTDP--QVATVGYSEAEAHHDG 461 (561)
T ss_pred CEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCC---cccCCCCCCeEEEccC--CceeeeCCHHHHHHcC
Confidence 999999999865 345568889999999998653 2245566776555444 455557664 2
Q ss_pred CEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+ .+.+..+. ...++|+|+++ ++++|||+|++|+++.++ +.++.+|++++|++|+..+.-+.++|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 540 (561)
T PRK13748 462 IETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVE 540 (561)
T ss_pred CCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHH
Confidence 111 11221111 23577899887 479999999999999885 9999999999999977766666666553
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=374.57 Aligned_cols=392 Identities=19% Similarity=0.227 Sum_probs=279.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC---------CCCC--------Cc
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT---------ARLP--------GF 66 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~---------~~~~--------~~ 66 (434)
+|+|||||+||++||..|++.|.+ |+|||++... ....|.++|.++..... ..++ .+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~---V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKN---VTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 799999999999999999999987 9999998643 22335555555432100 0010 00
Q ss_pred ccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCCCCCC
Q 013914 67 HVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 67 ~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~ 139 (434)
...... .........+++.+++++.+ ++..++.....+...++ .+++||+||||||++|+.++ +++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p---~~~~~~ 154 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP---FAPFDG 154 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC---CCCCCC
Confidence 000000 00011123344568999887 55545433333444444 36999999999999998776 344443
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
..+++. .++..+.+ .+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 155 ~~v~~~---~~~~~~~~-----~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~G 225 (458)
T PRK06912 155 KWIINS---KHAMSLPS-----IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDG 225 (458)
T ss_pred CeEEcc---hHHhCccc-----cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCC
Confidence 445443 23322211 4789999999999999999999999999999999999886 68999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccccCCcEEeCCCCCCCCCcEEE
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~iya 294 (434)
|++++++++++++. ++....+.. +| +++++|.+++|+|++|+++.+ ..++...++++.||+++||++|||||
T Consensus 226 I~i~~~~~V~~i~~--~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA 302 (458)
T PRK06912 226 VKIFTGAALKGLNS--YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYA 302 (458)
T ss_pred CEEEECCEEEEEEE--cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEE
Confidence 99999999999976 232223333 34 368999999999999999754 33555544569999999999999999
Q ss_pred ecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE
Q 013914 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL 368 (434)
Q Consensus 295 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~ 368 (434)
+|||+..+ +.+..|..+|+.|+.++.+... ...+..+|..+++.+++..+ |.++ +..+.
T Consensus 303 ~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~---~~~~~~~p~~v~~~p~~a~v--Glte~~a~~~g~~~~ 367 (458)
T PRK06912 303 CGDVIGGI----------QLAHVAFHEGTTAALHASGEDV---KVNYHAVPRCIYTSPEIASV--GLTEKQAREQYGDIR 367 (458)
T ss_pred EeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCcCCCCeEEecCchhEEe--eCCHHHHHHCCCCeE
Confidence 99999743 5677899999999999986431 24467788877655555544 6654 21122
Q ss_pred Ec-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 369 FG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 369 ~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.. ...+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.++|.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 442 (458)
T PRK06912 368 IGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSE 442 (458)
T ss_pred EEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHH
Confidence 21 11111 23567888887 579999999999999885 9999999999999988888777887765
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-47 Score=369.56 Aligned_cols=393 Identities=19% Similarity=0.245 Sum_probs=282.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCccCccccCCCCC----CCCCCcccc-------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPALSKAYLFPEGT----ARLPGFHVC------- 69 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~------- 69 (434)
++||++|||+|++|..||.. ..|.+ |+|||++... ....|.++|.++..... .....+...
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g~~---V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKR---IAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCCCe---EEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 36999999999999988654 45877 9999997542 23446666665533211 000111100
Q ss_pred ----cCC--C-CCC---C-ChhhH---hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCC
Q 013914 70 ----VGS--G-GER---L-LPEWY---KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 70 ----~~~--~-~~~---~-~~~~~---~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
... . ... . ..... ++.|++++.+..++. +.++|.+.+++++.||+||||||++|+.|+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~---~ 149 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYIPPA---I 149 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCCCCC---C
Confidence 000 0 000 0 01111 226899999866554 6778888778789999999999999987763 2
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
+.. ++ .+.+..++..+.+ .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+
T Consensus 150 ~~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~ 220 (452)
T TIGR03452 150 ADS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA 220 (452)
T ss_pred CCC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH
Confidence 211 22 2345566655432 3789999999999999999999999999999999988875 7999988887755
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCc
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
+ .||++++++++.+++.++++ ..+.+.+|+++++|.+++|+|++||++++. .++.. ++|+|.||+++||++|+
T Consensus 221 ~-~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~ 297 (452)
T TIGR03452 221 K-KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARG 297 (452)
T ss_pred h-cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCC
Confidence 4 68999999999999863333 456777888999999999999999998753 35666 67889999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CC
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GD 365 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~ 365 (434)
|||+|||+..+ +....|.+||+.+++||++.... ....+..+|+++++.+++..+ |.++ |.
T Consensus 298 IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~-~~~~~~~~p~~i~t~p~ia~v--Glte~ea~~~g~ 364 (452)
T TIGR03452 298 VWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDL-RKMPHDFVPSAVFTHPQIATV--GLTEQEAREAGH 364 (452)
T ss_pred EEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCc-ccCCCCCCCeEEECCCCeeee--eCCHHHHHhcCC
Confidence 99999999854 34567889999999999875311 125667789887765655544 7654 22
Q ss_pred EEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013914 366 TVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 366 ~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~ 432 (434)
.+.. ....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+ ..+.++|++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 443 (452)
T TIGR03452 365 DITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPE 443 (452)
T ss_pred CeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHH
Confidence 1211 111111 24567898887 579999999999999885 9999999999999987765 345666654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=371.43 Aligned_cols=393 Identities=17% Similarity=0.194 Sum_probs=277.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-C---CC-CCccCccccCCCCCCCCCCcccccC------C
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-P---YE-RPALSKAYLFPEGTARLPGFHVCVG------S 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~ 72 (434)
++|||+||||||||++||..|+++|.+ |+|||+++.. + .+ .|..++.++..... ...+..... .
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~---V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~--~~~~~~~~~~~~~~~~ 76 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKK---VALVEESKAMYGGTCINIGCIPTKTLLVAAEK--NLSFEQVMATKNTVTS 76 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCE---EEEEecCCcccceeeecCccccchHhhhhhhc--CCCHHHHHHHHHHHHH
Confidence 479999999999999999999999987 9999998632 1 11 12223333322111 001110000 0
Q ss_pred CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC---CcEEEcceEEEecCCCcccccCCCCCCCC-CCCeEEecCH
Q 013914 73 GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVLRLTDFGVEGAD-AKNIFYLREI 148 (434)
Q Consensus 73 ~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-~~~v~~~~~~ 148 (434)
.......+.+.+.+++++.+. ... .+.+++.+.+ ..++.||+||||||++|+.|+ ++|.+ ..++++..
T Consensus 77 ~~~~~~~~~~~~~gV~~~~g~-~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~---i~G~~~~~~v~~~~-- 148 (438)
T PRK07251 77 RLRGKNYAMLAGSGVDLYDAE-AHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNVLP---IPGLADSKHVYDST-- 148 (438)
T ss_pred HHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC---CCCcCCCCcEEchH--
Confidence 000112244566789998874 322 3466665543 246999999999999998887 46642 34555433
Q ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 149 ~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
++..+. . .+++++|||+|++|+|+|..+++.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++++
T Consensus 149 -~~~~~~----~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V 221 (438)
T PRK07251 149 -GIQSLE----T-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHT 221 (438)
T ss_pred -HHhcch----h-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 333221 1 4789999999999999999999999999999999999887 68999999999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh---ccccc-cCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK---GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~---~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
++++.+ ++. ..+. .+|+++++|.+++|+|++|+++.+. .++.. ++|++.||+++||++|||||+|||++.+.
T Consensus 222 ~~i~~~-~~~-v~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~- 297 (438)
T PRK07251 222 TEVKND-GDQ-VLVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ- 297 (438)
T ss_pred EEEEec-CCE-EEEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-
Confidence 999862 232 2333 4567899999999999999987643 34444 56889999999999999999999997543
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE-----EcCCC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL-----FGDND 373 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~-----~~~~~ 373 (434)
....|..+|+.++.++++... .....+..+|+..+. +..+..+|.++ |..+. +...+
T Consensus 298 ---------~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~--~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 365 (438)
T PRK07251 298 ---------FTYISLDDFRIVFGYLTGDGS-YTLEDRGNVPTTMFI--TPPLSQVGLTEKEAKEAGLPYAVKELLVAAMP 365 (438)
T ss_pred ---------cHhHHHHHHHHHHHHHcCCCC-ccccccCCCCEEEEC--CCceEeeeCCHHHHHhcCCCeEEEEEECCcch
Confidence 345677799999999886532 112345567876554 44555557654 21111 12112
Q ss_pred cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 374 LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 374 ~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+. ...++|+|+++ ++++|||+|++|++++++ +.++.||++++|++|+.....+.+++++
T Consensus 366 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 430 (438)
T PRK07251 366 RAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAE 430 (438)
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 11 23456888887 579999999999999885 9999999999999977665556666543
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=376.08 Aligned_cols=398 Identities=20% Similarity=0.265 Sum_probs=281.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC--CC---CCCCCCccCccccCCCCC----CC---CCCcccc---
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE--AV---APYERPALSKAYLFPEGT----AR---LPGFHVC--- 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~--~~---~~~~~~~~~~~~~~~~~~----~~---~~~~~~~--- 69 (434)
+|||+|||+|++|+.||..++++|.+ |+|||++ .. +....|.++|.++..... .+ +..+...
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~k---V~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~ 192 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLK---VIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA 192 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence 68999999999999999999999998 9999975 22 123345666665543311 00 0111110
Q ss_pred --------------c-CC-C-C---------------CCCChhhHhhc-------CcEEEcCCeeEEEECCCCEEEc-cC
Q 013914 70 --------------V-GS-G-G---------------ERLLPEWYKEK-------GIELILSTEIVRADIASKTLLS-AT 109 (434)
Q Consensus 70 --------------~-~~-~-~---------------~~~~~~~~~~~-------~v~~~~~~~v~~i~~~~~~v~~-~~ 109 (434)
. .. . . .......++.. +++++.+...+ .+.++|.. .+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f---~~~~~v~v~~~ 269 (659)
T PTZ00153 193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHI---VDKNTIKSEKS 269 (659)
T ss_pred ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEE---ecCCeEEEccC
Confidence 0 00 0 0 00111222333 36777763322 14555544 35
Q ss_pred CcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeE
Q 013914 110 GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDV 189 (434)
Q Consensus 110 ~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v 189 (434)
++++.||+||||||++|+.|+. .+.+...++++ +++..+.. .+++++|||+|++|+|+|..|.+.|.+|
T Consensus 270 g~~i~ad~lIIATGS~P~~P~~---~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eV 338 (659)
T PTZ00153 270 GKEFKVKNIIIATGSTPNIPDN---IEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEV 338 (659)
T ss_pred CEEEECCEEEEcCCCCCCCCCC---CCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeE
Confidence 6689999999999999988763 34444556654 34433321 3789999999999999999999999999
Q ss_pred EEEccCCccCCccCCHHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-------C--------cEEECC
Q 013914 190 SMVYPEPWCMPRLFTADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-------G--------RTLEAD 253 (434)
Q Consensus 190 ~lv~~~~~~~~~~~~~~~~~~~~~~l-~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~~~~D 253 (434)
+++++.+++++. +++++.+.+.+.+ ++.||++++++.|.+++..+++....+.+.+ + +++++|
T Consensus 339 TLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 339 VSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred EEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 999999999986 7999999998875 6799999999999999864333323343321 1 379999
Q ss_pred EEEEcccCccChhhh---hccccccCCcEEeCCCCCCC------CCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 254 IVVVGVGGRPLISLF---KGQVAENKGGIETDDFFKTS------ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 254 ~vi~a~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~------~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
.|++|+|++||++.+ ..++..++|+|.||++|||+ +|+|||+|||++.+ .+...|..||+.
T Consensus 418 ~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~ 487 (659)
T PTZ00153 418 SCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALK 487 (659)
T ss_pred EEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHH
Confidence 999999999999875 33555566889999999996 69999999998653 466788999999
Q ss_pred HHHHHhccCCC----------CcccCCCCCCeeEEeccCceeEEeecCCCCE-------------EEEcCCCcc------
Q 013914 325 AVKTIMATEGG----------KTVTGYDYLPYFYSRAFDLSWQFYGDNVGDT-------------VLFGDNDLA------ 375 (434)
Q Consensus 325 aa~~i~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~-------------~~~~~~~~~------ 375 (434)
+++||++.... .....|..+|...++.|+++.+ |+++.+. ..+....+.
T Consensus 488 aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~PeiA~V--GlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~ 565 (659)
T PTZ00153 488 VVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFI--GLTEKEAKELYPPDNVGVEISFYKANSKVLCENNI 565 (659)
T ss_pred HHHHHcCCCccccccccccccccccccCcCCEEEECcCceEEe--eCCHHHHHhcCCCcceEEEEEEecccchhhhcccc
Confidence 99999875210 1235567788877777766655 6654210 112111111
Q ss_pred -------------------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 376 -------------------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 376 -------------------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+++.+
T Consensus 566 ~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE 644 (659)
T PTZ00153 566 SFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISE 644 (659)
T ss_pred ccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHH
Confidence 01567888877 579999999999999885 9999999999999988877777776654
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=372.75 Aligned_cols=394 Identities=18% Similarity=0.152 Sum_probs=275.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCccCccccCCCCC----CCCC--Cccccc-CC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEGT----ARLP--GFHVCV-GS 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~~----~~~~--~~~~~~-~~ 72 (434)
.++|++|||+|+||+++|..|+++|.+ |++||+++.. ....|.+++.++..... ...+ ++.... ..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~---v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGAR---VTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCe---EEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 369999999999999999999999987 9999997432 12234445544322100 0001 111000 00
Q ss_pred C--------------C-CCCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCC
Q 013914 73 G--------------G-ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 73 ~--------------~-~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
. . .......++.. +++++.+. ..-++...-.|...++. ++.||+||||||++|+.|+ +
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~-a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~---i 167 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGY-ARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP---I 167 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE-EEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC---C
Confidence 0 0 00122233333 78888874 33333322234445553 6999999999999998887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+....++ + .+... . ...+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++.+.+.+.
T Consensus 168 ~G~~~~~~~~--~-~~~l~--~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~ 237 (479)
T PRK14727 168 PGLMDTPYWT--S-TEALF--S---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTAC 237 (479)
T ss_pred CCcCccceec--c-hHHhc--c---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHH
Confidence 6654333332 1 12111 1 114789999999999999999999999999999875 56665 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+++.||+++++++++++..++++ ..+.+.++ ++++|.|++|+|++||++++ ..++.. .+|+|.||+++||++|
T Consensus 238 L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~ 314 (479)
T PRK14727 238 FEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAP 314 (479)
T ss_pred HHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCC
Confidence 99999999999999999863322 34555555 69999999999999999854 235665 5788999999999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC------
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------ 364 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------ 364 (434)
+|||+|||++.+ .....|..+|+.||.||++... ..++...|...+..++ +..+|.++.
T Consensus 315 ~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~p~--ia~vGlte~~a~~~g 379 (479)
T PRK14727 315 DIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNA---TLDLSAMPAVIFTDPQ--VATVGLSEAKAHLSG 379 (479)
T ss_pred CEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCc---ccccccCCcEEEecCc--eeeeeCCHHHHHHcC
Confidence 999999999765 3456788899999999987532 2455667776655454 455576642
Q ss_pred CEE-----EEcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTV-----LFGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~-----~~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+ .+.+..+. ...+.|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-+.+++.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 458 (479)
T PRK14727 380 IETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVE 458 (479)
T ss_pred CceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHH
Confidence 111 11221111 23567899887 579999999999999885 9999999999999977766666666543
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=369.92 Aligned_cols=393 Identities=19% Similarity=0.177 Sum_probs=277.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC---------C---CCCCCCccCccccCCCCC----CCCCCccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA---------V---APYERPALSKAYLFPEGT----ARLPGFHV 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~---------~---~~~~~~~~~~~~~~~~~~----~~~~~~~~ 68 (434)
+||+||||+|+||+.+|..+++.|.+ |++||+.. . +....|.++|.++..... .....+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~---v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~ 78 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAK---VMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGW 78 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCc
Confidence 58999999999999999999999987 99999731 1 122234555554432211 00011111
Q ss_pred ccCC----C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEcc--CC--cEEEcceEEEecCCCc
Q 013914 69 CVGS----G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 69 ~~~~----~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~ 126 (434)
.... . ........++..+++++.+.. .-++ .+++.+. ++ .+++||+||||||++|
T Consensus 79 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~f~~--~~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 79 NVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-EFVD--KHRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred ccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEcC--CCEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 0000 0 001222345667999999844 3333 4555442 33 3699999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.|+ +||.+. ..+ +.+++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+ +.+++. ++++
T Consensus 156 ~~p~---ipG~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 221 (484)
T TIGR01438 156 RYPG---IPGAKE-LCI---TSDDLFSLP----Y-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQD 221 (484)
T ss_pred CCCC---CCCccc-eee---cHHHhhccc----c-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHH
Confidence 8887 566432 122 333333221 1 468999999999999999999999999999987 466665 7999
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hcccccc--CCc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAEN--KGG 278 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~---~~~~~~~--~g~ 278 (434)
+.+.+.+.|++.||++++++.+.++...+ +. ..+++.++ +++++|.|++|+|++||++++ ..++..+ +|+
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~ 299 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGK 299 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCe
Confidence 99999999999999999999999987632 22 34666555 379999999999999999864 3355552 488
Q ss_pred EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEE
Q 013914 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358 (434)
Q Consensus 279 i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 358 (434)
|.||+++||++|+|||+|||+.... ..+..|.+||+.+++||++... ....|..+|+..++.|+++.+
T Consensus 300 I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~--~~~~~~~~p~~i~~~p~ia~v- 367 (484)
T TIGR01438 300 IPADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGST--VICDYENVPTTVFTPLEYGAC- 367 (484)
T ss_pred EecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCC--cccccccCCeEEeCCCceeee-
Confidence 9999999999999999999996322 3567789999999999987532 124667788887766655544
Q ss_pred eecCCCC--------EEEEc--CCCcc------cC--CCcEEEEEE---eCCEEEEEEEecCCHHHH-HHHHHHHHcCCC
Q 013914 359 YGDNVGD--------TVLFG--DNDLA------SA--THKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQPS 416 (434)
Q Consensus 359 ~g~~~~~--------~~~~~--~~~~~------~~--~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~ 416 (434)
|.++.+ .+... ...+. .. ...|+|+++ ++++|||+|++|+++.++ +.++.||++++|
T Consensus 368 -Glte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t 446 (484)
T TIGR01438 368 -GLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLT 446 (484)
T ss_pred -cCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCC
Confidence 655421 11111 11110 11 457888775 369999999999999885 999999999999
Q ss_pred CCChhhhhccCCCccc
Q 013914 417 VESLDVLKNEGLSFAS 432 (434)
Q Consensus 417 ~~~~~~l~~~~~~~~~ 432 (434)
++||..+-.+.++|.+
T Consensus 447 ~~dl~~~~~~hPt~sE 462 (484)
T TIGR01438 447 KKDLDNTIGIHPVCAE 462 (484)
T ss_pred HHHHhhhhcCCCChHH
Confidence 9988876666666654
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=371.23 Aligned_cols=397 Identities=22% Similarity=0.283 Sum_probs=278.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeC-------CCCCC--CC-CCccCccccCCCCC-CCC----CCcc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISK-------EAVAP--YE-RPALSKAYLFPEGT-ARL----PGFH 67 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~-------~~~~~--~~-~~~~~~~~~~~~~~-~~~----~~~~ 67 (434)
++.||++|||||+||++||.++++.|.+ |+|||+ ....+ .+ .|.+++.++..... ... ..+.
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~---v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G 78 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLK---VACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHG 78 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCe---EEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcC
Confidence 4579999999999999999999999987 999998 21111 11 12222322211100 000 0000
Q ss_pred cccCC---C--------------CCCCChhhHhhcCcEEEcCCeeEEEEC--CCCEEEcc--CCcEEEcceEEEecCCCc
Q 013914 68 VCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADI--ASKTLLSA--TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~~~--~~~~~~~d~lvlAtG~~~ 126 (434)
..... + ........++..+++++.+ .+..++. +.++|.+. ++++++||+||||||++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 79 IHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 00000 0 0001223344568999987 4555543 24566653 345799999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.++. ++ .+...+++. .+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++++
T Consensus 158 ~~~p~--~~-~~~~~~~~~---~~~~~~~-----~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~ 225 (475)
T PRK06327 158 RHLPG--VP-FDNKIILDN---TGALNFT-----EVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQ 225 (475)
T ss_pred CCCCC--CC-CCCceEECc---HHHhccc-----ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHH
Confidence 75543 22 222334322 2222221 14789999999999999999999999999999999998886 7899
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEcccCccChhhh---hccccc-cCCc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGG 278 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~ 278 (434)
+.+.+.+.+++.||+++++++|.+++.++++ ..+.+.+ | +++++|.+++|+|++|+++.+ ..++.. ++|+
T Consensus 226 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~ 303 (475)
T PRK06327 226 VAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG--VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGF 303 (475)
T ss_pred HHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE--EEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCe
Confidence 9999999999999999999999999873332 3455443 3 469999999999999999854 234555 5788
Q ss_pred EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEE
Q 013914 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358 (434)
Q Consensus 279 i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 358 (434)
|.||+++||++|+|||+|||+..+ ..+..|..||+.||.||++... ...|..+|+.++..++++ .
T Consensus 304 i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~---~~~~~~~p~~~~~~pe~a--~ 368 (475)
T PRK06327 304 IPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAERIAGQKG---HIDYNTIPWVIYTSPEIA--W 368 (475)
T ss_pred EeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEeCCcceE--E
Confidence 999999999999999999999754 4577889999999999987532 146677888776555554 5
Q ss_pred eecCC------CCEEEEcC-----CCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChh
Q 013914 359 YGDNV------GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLD 421 (434)
Q Consensus 359 ~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~ 421 (434)
+|.++ |..+..+. ..+. ....+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||.
T Consensus 369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~ 448 (475)
T PRK06327 369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIA 448 (475)
T ss_pred EeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 57654 22122211 1111 24567898887 579999999999999885 99999999999999888
Q ss_pred hhhccCCCccc
Q 013914 422 VLKNEGLSFAS 432 (434)
Q Consensus 422 ~l~~~~~~~~~ 432 (434)
.+..+.++|.+
T Consensus 449 ~~~~~hPt~~e 459 (475)
T PRK06327 449 RICHAHPTLSE 459 (475)
T ss_pred cCCcCCCChHH
Confidence 87767777654
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=369.20 Aligned_cols=395 Identities=23% Similarity=0.231 Sum_probs=274.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC----CCCCCCcccccCCC---
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGSG--- 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--- 73 (434)
++|||||||||+||++||.+|++.|.+ |+|||++...+ ...|.+++.++.... ..+.+.+.......
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKK---VALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 469999999999999999999999987 99999954321 222334443332110 00011110000000
Q ss_pred --------------CCCCC-hhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 --------------GERLL-PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 --------------~~~~~-~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
..... ...++..+++++.+ .+..+ +.+++.+ +++++.||++|+|||+. .|+.+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~--~~~~v~v-~~~~~~~d~lIiATGs~--~p~ipg~~~~~ 152 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFV--DPNTVEV-NGERIEAKNIVIATGSR--VPPIPGVWLIL 152 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEc--cCCEEEE-CcEEEEeCEEEEeCCCC--CCCCCCCcccC
Confidence 00011 22334457888776 34333 3345555 66789999999999999 33322222112
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++++ .+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 153 ~~~~~~~---~~~~~~~-----~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~ 223 (460)
T PRK06292 153 GDRLLTS---DDAFELD-----KLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE 223 (460)
T ss_pred CCcEECc---hHHhCcc-----ccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc
Confidence 3344433 3332221 14789999999999999999999999999999999999885 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
|++++++++.+++..++.. ..+++.++ +++++|.+++|+|++||++.+ ..++.. ++|+|.||+++||++|+|
T Consensus 224 -I~i~~~~~v~~i~~~~~~~-v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~I 301 (460)
T PRK06292 224 -FKIKLGAKVTSVEKSGDEK-VEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGI 301 (460)
T ss_pred -cEEEcCCEEEEEEEcCCce-EEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCE
Confidence 9999999999998632211 23333334 479999999999999999853 345655 578899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||++.+ ..+..|..||+.||.||++... ....+..+|+.+++.++++. +|.++ |..
T Consensus 302 yA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~--~~~~~~~~p~~~~~~~~~a~--vG~te~~a~~~g~~ 367 (460)
T PRK06292 302 YAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVA--GGVRYHPIPSVVFTDPQIAS--VGLTEEELKAAGID 367 (460)
T ss_pred EEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCC--CCcCCCCCCeEEECCCccEE--eECCHHHHHhcCCC
Confidence 9999999754 4567789999999999987421 12456678877766665554 47664 221
Q ss_pred EEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+.. ....+. ...++|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.++|.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (460)
T PRK06292 368 YVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSE 444 (460)
T ss_pred eEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHH
Confidence 211 111111 23577888887 469999999999999885 9999999999999988777666666654
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=366.42 Aligned_cols=395 Identities=19% Similarity=0.182 Sum_probs=275.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC----C----C----CCCCCccCccccCCCCC-----CCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA----V----A----PYERPALSKAYLFPEGT-----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~----~----~----~~~~~~~~~~~~~~~~~-----~~~~~~ 66 (434)
.+|||+||||||||++||.+|+++|.+ |+|||++. . . ....|.+++.++..... .....+
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~---V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKK---VALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcC
Confidence 469999999999999999999999987 99999732 1 0 11123333322211000 000000
Q ss_pred ccccC--C--------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC---CcEEEcceEEEecCCCcc
Q 013914 67 HVCVG--S--------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT---GLIFKYQILVIATGSTVL 127 (434)
Q Consensus 67 ~~~~~--~--------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~~~~~d~lvlAtG~~~~ 127 (434)
..... . .........++..+++++.+ .... .+.++|.+.+ +..++||+||||||+.|+
T Consensus 81 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~ 157 (499)
T PTZ00052 81 GWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPS 157 (499)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCC
Confidence 00000 0 00001112223357777776 3332 3456665532 347999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+. ++|.+. ..+ +..+...+. . .+++++|||+|++|+|+|..|.+.|.+|+++.+. .+++. +++++
T Consensus 158 ~p~~--i~G~~~-~~~---~~~~~~~~~----~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~-~d~~~ 224 (499)
T PTZ00052 158 IPED--VPGAKE-YSI---TSDDIFSLS----K-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLRG-FDRQC 224 (499)
T ss_pred CCCC--CCCccc-eee---cHHHHhhhh----c-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccccc-CCHHH
Confidence 7642 465432 122 333333221 1 4689999999999999999999999999999874 56654 89999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.|++.||++++++.+.++...+ +. ..+.+.+|+++++|.|++++|++||++++ ..++.. .+|++.+++
T Consensus 225 ~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~ 302 (499)
T PTZ00052 225 SEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPN 302 (499)
T ss_pred HHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCC
Confidence 9999999999999999999999998633 22 45777888889999999999999999876 335655 567777777
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
. ||++|+|||+|||+.... ..+..|.+||+.+++||++... ....+..+|+.+++.|+++.+ |+++
T Consensus 303 ~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~--~~~~~~~~p~~ift~p~ia~v--Glte 368 (499)
T PTZ00052 303 D-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSN--EFIDYTFIPTTIFTPIEYGAC--GYSS 368 (499)
T ss_pred C-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCC--CcCccccCCeEEecCCcceee--cCCH
Confidence 7 999999999999996321 4678899999999999987532 235667789888777766555 7553
Q ss_pred C--------CEEEEcC--C---C-----cc-------------cCCCcEEEEEE-e--CCEEEEEEEecCCHHHH-HHHH
Q 013914 364 G--------DTVLFGD--N---D-----LA-------------SATHKFGTYWI-K--DGKVVGVFLESGTPEEN-KAIA 408 (434)
Q Consensus 364 ~--------~~~~~~~--~---~-----~~-------------~~~~~~~~~~~-~--~~~ilG~~~~g~~~~~~-~~~~ 408 (434)
. ..+.... . . .. ..+.+|+|+++ + +++|||+|++|++++|+ +.++
T Consensus 369 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~ 448 (499)
T PTZ00052 369 EAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFS 448 (499)
T ss_pred HHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHH
Confidence 2 1111110 0 0 00 01467898876 2 69999999999999996 9999
Q ss_pred HHHHcCCCCCChhhhhccCCCcccc
Q 013914 409 KVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 409 ~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.||++++|++||..+..+.+++++.
T Consensus 449 ~ai~~~~t~~~l~~~~~~hPt~sE~ 473 (499)
T PTZ00052 449 LALKLGAKKSDFDSMIGIHPTDAEV 473 (499)
T ss_pred HHHHCCCCHHHHhcccccCCCCchh
Confidence 9999999999888887777777654
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=363.67 Aligned_cols=396 Identities=23% Similarity=0.278 Sum_probs=278.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCCC-CC---CCCcccccCCC----
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEGT-AR---LPGFHVCVGSG---- 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~---- 73 (434)
.|||+|||||+||++||.+|+++|.+ |+|||++...+ ...|.+++.++..... .. ...+.......
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~---v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLK---VALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 38999999999999999999999987 99999943321 1122233333322111 00 00000000000
Q ss_pred -------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCC-CCC
Q 013914 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVE-GAD 138 (434)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~-g~~ 138 (434)
........+++.+++++.+ .+..++.....+...++ .++.||++|+|||++|+.|+. + +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~---~~~~~ 153 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPG---PFDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCC---CCCCC
Confidence 0001123345568999887 44444433333443343 479999999999999987763 3 222
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
...++ +..+...+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.
T Consensus 154 ~~~~~---~~~~~~~~~~-----~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~ 224 (461)
T TIGR01350 154 GEVVI---TSTGALNLKE-----VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKK 224 (461)
T ss_pred CceEE---cchHHhcccc-----CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHc
Confidence 22233 3334333211 4789999999999999999999999999999999998885 7899999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hh-hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LF-KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~--~~-~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
||++++++++.+++.+ ++. ..+.+.+| +++++|.+++|+|++|+++ ++ ..++.. .+|+|.||+++||++|+|
T Consensus 225 gi~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~I 302 (461)
T TIGR01350 225 GVKILTNTKVTAVEKN-DDQ-VVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGI 302 (461)
T ss_pred CCEEEeCCEEEEEEEe-CCE-EEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCE
Confidence 9999999999999863 333 34666667 4799999999999999998 33 335655 568899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||+..+ ..+..|..+|+.+|.||.+.... ...+...|...+..++ +..+|.++ |..
T Consensus 303 yaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~~~~--~a~vG~~~~~a~~~g~~ 368 (461)
T TIGR01350 303 YAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYTDPE--VASVGLTEEQAKEAGYD 368 (461)
T ss_pred EEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEecCCc--eEEEeCCHHHHHhCCCC
Confidence 9999999753 46788999999999999875321 2345566766555444 45556653 221
Q ss_pred EEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+... +..+. .....|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.++|++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e 445 (461)
T TIGR01350 369 VKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSE 445 (461)
T ss_pred eEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHH
Confidence 2111 11111 23567888877 479999999999998885 9999999999999998888777777764
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-45 Score=352.67 Aligned_cols=383 Identities=19% Similarity=0.273 Sum_probs=291.7
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCC-hhhHhhcCcEEEcCCeeEE
Q 013914 19 YAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL-PEWYKEKGIELILSTEIVR 97 (434)
Q Consensus 19 ~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~v~~ 97 (434)
+||.+|++.+ +..+|+|||+++.+.|..+.+.... ..... .+. ...... ..++.+.+++++.+++|+.
T Consensus 1 saA~~l~~~~-~~~~Vtlid~~~~~~~~~~~l~~~~-~g~~~--~~~-------~~~~~~~~~~~~~~gv~~~~~~~V~~ 69 (427)
T TIGR03385 1 SAASRVRRLD-KESDIIVFEKTEDVSFANCGLPYVI-GGVID--DRN-------KLLAYTPEVFIKKRGIDVKTNHEVIE 69 (427)
T ss_pred CHHHHHHhhC-CCCcEEEEEcCCceeEEcCCCCeEe-ccccC--CHH-------HcccCCHHHHHHhcCCeEEecCEEEE
Confidence 4788898874 3567999999987655432221111 00000 000 001122 3455788999988889999
Q ss_pred EECCCCEEEccC---CcEEE--cceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCC
Q 013914 98 ADIASKTLLSAT---GLIFK--YQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGG 172 (434)
Q Consensus 98 i~~~~~~v~~~~---~~~~~--~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g 172 (434)
++++.+++.+.+ +.++. ||+||||||++|+.|+ ++|.+..++++.+++.++..+++.+....+++++|+|+|
T Consensus 70 id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~---i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 70 VNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPN---IEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCC---CCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 999998887653 34677 9999999999998877 577666778999999999888888865567999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEEC
Q 013914 173 YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 252 (434)
Q Consensus 173 ~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~ 252 (434)
++|+|+|..|.+.|.+|+++++.+.++...+++++.+.+.+.+++.||++++++.+.++.. ++.+ +.+.+|+++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~ 222 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQA 222 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEe
Confidence 9999999999999999999999988854447899999999999999999999999999976 4433 55678889999
Q ss_pred CEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 253 DIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 253 D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
|.+++|+|++|++++++. ++.. .+|+|.||+++||+.|+|||+|||+..+....+.+...+++..|.+||+.+|+||.
T Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 223 DMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhc
Confidence 999999999999988754 6666 56899999999999999999999998776555544445688899999999999998
Q ss_pred ccCCCCcccCCC-CCCeeEEeccCceeEEeecCCC------CEE---EEc--CCCc--ccCCCcEEEEEE--eCCEEEEE
Q 013914 331 ATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVG------DTV---LFG--DNDL--ASATHKFGTYWI--KDGKVVGV 394 (434)
Q Consensus 331 ~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~------~~~---~~~--~~~~--~~~~~~~~~~~~--~~~~ilG~ 394 (434)
+.. ..|. ..+..+..+++..+..+|.++. ..+ .+. +... .....+|+|+++ ++++|||+
T Consensus 303 g~~-----~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~ 377 (427)
T TIGR03385 303 GND-----IEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGA 377 (427)
T ss_pred CCC-----CCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEE
Confidence 752 3343 2234445566777888887652 111 111 1111 123456888887 47999999
Q ss_pred EEecCC-HHHH-HHHHHHHHcCCCCCChhhhh
Q 013914 395 FLESGT-PEEN-KAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 395 ~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~l~ 424 (434)
|++|++ +.++ +.++.+|++++|++|+..+.
T Consensus 378 ~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~ 409 (427)
T TIGR03385 378 QAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE 409 (427)
T ss_pred EEEccccHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 999998 8785 99999999999999776544
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=347.44 Aligned_cols=384 Identities=26% Similarity=0.398 Sum_probs=323.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+.++||||.|+||..+..++.+......+|+++-.+++..|+|..++..+-.......+ .....+|+++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi-----------~l~~~dwy~~ 71 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDI-----------SLNRNDWYEE 71 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHH-----------hccchhhHHH
Confidence 57899999999999999999985444557999999999999999888766544433322 2456789999
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
++++++.+..++.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.+++.+|...+.+.-+ ..+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P---iPG~~~~~v~~~R~i~D~~am~~~ar--~~~ 146 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP---IPGSDLPGVFVYRTIDDVEAMLDCAR--NKK 146 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC---CCCCCCCCeeEEecHHHHHHHHHHHh--ccC
Confidence 9999999999999999999999999999999999999999999999 79999999999999999999988843 356
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+.+|||+|..|+|+|..|...|.++++++-.+.++.+.+|+.....|++.+++.|+++++++..+++.. ++++..+.+
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEee
Confidence 689999999999999999999999999999999998889999999999999999999999998888876 778889999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 245 KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
+||+.+++|+|++|+|.+||.++... ++...+ +|.||++|||++|+|||+|+|+.+....+ .+++.+..|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~y------GLVaP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVY------GLVAPLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccc------eehhHHHHHHH
Confidence 99999999999999999999999865 555544 89999999999999999999999765433 57888999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC----CCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecC
Q 013914 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~ 399 (434)
++|.++.+...+ ..-...++..-+..++.+.+.|... ...+.+-|.. ...|.|+.+++++|+|+.++|+
T Consensus 298 v~a~hl~~~~~~---~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~iv~~D~~----~~iYKrlvL~dd~IvgavL~GD 370 (793)
T COG1251 298 VLADHLCGGEAE---AYEGSVTSTKLKVSGVDVFSAGDFQETEGAESIVFRDEQ----RGIYKKLVLKDDKIVGAVLYGD 370 (793)
T ss_pred HHHHHhccCccc---ccccccchhhhcccccceeeccchhhcCCCceEEEeccc----ccceeEEEEeCCeEEEEEEEee
Confidence 999999987543 1112333334455666666666543 2345555544 4678889999999999999995
Q ss_pred CHHHHHHHHHHHHcCCCCCChh
Q 013914 400 TPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 400 ~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
.++-..+-.+|.++.+++++.
T Consensus 371 -t~d~~~l~~li~~~~~~se~r 391 (793)
T COG1251 371 -TSDGGWLLDLILKGADISEIR 391 (793)
T ss_pred -cccchHHHHHHhcCCCccccc
Confidence 566778888999999887644
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=324.86 Aligned_cols=395 Identities=24% Similarity=0.306 Sum_probs=297.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCccCccccCCCCCCCC------CCcccccCC-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGTARL------PGFHVCVGS- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~~~~~~~- 72 (434)
..||++|||+||+|..||..+++.|++ -+.+|++...+- ..|-+|+.+++....... .........
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlk---TacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLK---TACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcce---eEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 359999999999999999999999998 688999765321 234557777655422110 000000000
Q ss_pred --C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCC
Q 013914 73 --G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 73 --~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
+ ...-....+++.+++++.+.. .-+++..-.+...|+ ..+.++++|+|||+.-. + +
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~g-sf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~--~---~ 188 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFG-SFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT--P---F 188 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeE-eecCCceEEEeccCCCceEEeeeeEEEEeCCccC--C---C
Confidence 0 011223345667888888733 333343333444455 47899999999999532 2 2
Q ss_pred CCC--CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 135 EGA--DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 135 ~g~--~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
||. +.+.+.++.-...... -|++++|+|+|++|+|++..+.++|.+||+++-.+.+.+. +|.++++.++
T Consensus 189 PGI~IDekkIVSStgALsL~~--------vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~q 259 (506)
T KOG1335|consen 189 PGITIDEKKIVSSTGALSLKE--------VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQ 259 (506)
T ss_pred CCeEecCceEEecCCccchhh--------CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHH
Confidence 342 4455665544333333 4899999999999999999999999999999999999987 8999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDD 283 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~ 283 (434)
+.|.+.|++|+++++|...+.+.+|.+ .+++.+ + ++++||.+++++|++|-+.-+ +.++.. ..+++.||.
T Consensus 260 r~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~ 338 (506)
T KOG1335|consen 260 RVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNT 338 (506)
T ss_pred HHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccc
Confidence 999999999999999999998777643 454433 2 479999999999999998755 345665 678999999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
+++|.+|+||++|||...|+. +..|..||-.+.+.|.+.. ....|..+|.+.++.|+++|+ |.++
T Consensus 339 ~f~t~vP~i~~IGDv~~gpML----------AhkAeeegI~~VE~i~g~~---~hv~ynciP~v~ythPEvawV--G~TE 403 (506)
T KOG1335|consen 339 RFQTKVPHIYAIGDVTLGPML----------AHKAEEEGIAAVEGIAGGH---GHVDYNCIPSVVYTHPEVAWV--GKTE 403 (506)
T ss_pred cccccCCceEEecccCCcchh----------hhhhhhhchhheeeecccC---cccccCCCCceeecccceeee--ccch
Confidence 999999999999999998854 5567789999988888753 238899999999999999999 5543
Q ss_pred ------CCEEEEcCCCcc--------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 ------GDTVLFGDNDLA--------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ------~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
|..+..|..+.. ...++|+|+.. +++||||+||+||+|.|+ +.+++||..+.+.+|+.+.--+
T Consensus 404 eqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvcha 483 (506)
T KOG1335|consen 404 EQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHA 483 (506)
T ss_pred hhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCC
Confidence 555666655543 24577888777 789999999999999996 9999999999999999987777
Q ss_pred CCCccc
Q 013914 427 GLSFAS 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.+++-.
T Consensus 484 HPTlSE 489 (506)
T KOG1335|consen 484 HPTLSE 489 (506)
T ss_pred CCcHHH
Confidence 766543
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=309.38 Aligned_cols=394 Identities=18% Similarity=0.224 Sum_probs=287.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCcc-CccccCCCCC----C----------CCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPAL-SKAYLFPEGT----A----------RLPG 65 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~-~~~~~~~~~~----~----------~~~~ 65 (434)
+.+|.+|||||.+|+++|+++++.|.+ +.|+|.....+ .++.|. .+-+|+.... . ....
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAk---v~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAK---VALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCce---EEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 469999999999999999999999987 89999873211 122222 2333322210 0 1111
Q ss_pred cccccCCC--------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccccCCCCC
Q 013914 66 FHVCVGSG--------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 66 ~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
|.|..-.. ....+...+.+.+++++.+ ...-+++..-.|...++. .+++++++||||++|..|+ ||
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn---Ip 171 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPN---IP 171 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCC---CC
Confidence 11111000 0011222334467888888 444444544566666664 3789999999999999997 67
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
|.+. -..++.+.+.+. .|++++|+|+|++++|+|..++.+|.+++++.|.+.++.. ||+.+++.+.+.+
T Consensus 172 G~E~--gidSDgff~Lee--------~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~ 240 (478)
T KOG0405|consen 172 GAEL--GIDSDGFFDLEE--------QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHL 240 (478)
T ss_pred chhh--ccccccccchhh--------cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHh
Confidence 7542 112222222222 5899999999999999999999999999999999999987 8999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCc
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
+..||++|.++.++++....+|.. .+.+..|....+|.++||+|++||+.-+ +.++.+ .+|.|.||++.+||+|+
T Consensus 241 ~~~ginvh~~s~~~~v~K~~~g~~-~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~ 319 (478)
T KOG0405|consen 241 EGRGINVHKNSSVTKVIKTDDGLE-LVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS 319 (478)
T ss_pred hhcceeecccccceeeeecCCCce-EEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCc
Confidence 999999999999999988666644 3445556555699999999999999755 447777 78999999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-------
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG------- 364 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~------- 364 (434)
||++||+++-- .+...|+.+|+..+..+++... .....|..+|..++..|.+..+ |+++.
T Consensus 320 I~avGDv~gk~----------~LTPVAiaagr~la~rlF~~~~-~~kldY~nVp~vVFshP~igtV--GLtE~EAiekyg 386 (478)
T KOG0405|consen 320 IWAVGDVTGKI----------NLTPVAIAAGRKLANRLFGGGK-DTKLDYENVPCVVFSHPPIGTV--GLTEEEAIEKYG 386 (478)
T ss_pred eEEeccccCcE----------ecchHHHhhhhhHHHHhhcCCC-CCccccccCceEEEecCCcccc--cCCHHHHHHHhC
Confidence 99999999854 3456688899999999998422 1348899999999988888766 66542
Q ss_pred --C-EEEEcCCCcc------cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCC
Q 013914 365 --D-TVLFGDNDLA------SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLS 429 (434)
Q Consensus 365 --~-~~~~~~~~~~------~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~ 429 (434)
+ .+......+. ...+.+.|+++ ++.+++|+||+|+.+.|| +.++.|+.+|.|..|+++...-.++
T Consensus 387 ~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPT 463 (478)
T KOG0405|consen 387 KGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPT 463 (478)
T ss_pred ccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCC
Confidence 1 1222222111 23455677776 789999999999999997 9999999999999999876655444
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=326.99 Aligned_cols=311 Identities=25% Similarity=0.356 Sum_probs=251.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+++|||||||++|+.+|..|.+.. ++.+|++||+++++.|. |.+..... ..++.- .....+...++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~-----g~l~~~------~i~~p~~~~~~~ 69 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVAT-----GTLSES------EIAIPLRALLRK 69 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhc-----CCCChh------heeccHHHHhcc
Confidence 579999999999999999999975 35669999999987654 32211111 111100 011344566664
Q ss_pred cC-cEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh---
Q 013914 85 KG-IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~-v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~--- 160 (434)
.+ ++++++ +|++||++.++|.+.+++.+.||+||+|+|+.+..+. +||.. +..+.+++++++.++++++..
T Consensus 70 ~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fg---i~G~~-E~a~~lks~edA~~ir~~l~~~fe 144 (405)
T COG1252 70 SGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFG---IPGAA-EYAFGLKTLEDALRLRRHLLEAFE 144 (405)
T ss_pred cCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCcCC---CCCHH-HhCCCCCCHHHHHHHHHHHHHHHH
Confidence 44 999997 9999999999999999778999999999999987666 67754 567788999999998887751
Q ss_pred ----CCC----CcEEEECCCHHHHHHHHHHHhCC-------------CeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 161 ----KKN----GKAVVVGGGYIGLELSAALKINN-------------IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 161 ----~~~----~~v~ViG~g~~~~e~a~~l~~~g-------------~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
... .+++|+|+|++|+|+|.+|.+.- .+|+++++.++++|. +++++++..++.|++.|
T Consensus 145 ~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 145 KASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEKLG 223 (405)
T ss_pred HhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCC
Confidence 112 26899999999999999987641 389999999999996 89999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhhh-ccccc-cCCcEEeCCCCCC-CCCcEEEe
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLFK-GQVAE-NKGGIETDDFFKT-SADDVYAV 295 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~~-~~~~~-~~g~i~vd~~~~t-~~~~iya~ 295 (434)
|++++++.|++++. ..|++++|. +|+++++|||+|.+++...-+ .+.+. ..|++.||+++|+ ++|+|||+
T Consensus 224 V~v~l~~~Vt~v~~------~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~ 297 (405)
T COG1252 224 VEVLLGTPVTEVTP------DGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAA 297 (405)
T ss_pred CEEEcCCceEEECC------CcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEE
Confidence 99999999999986 357888887 499999999999999877655 35555 4699999999998 99999999
Q ss_pred cccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCC
Q 013914 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYL 344 (434)
Q Consensus 296 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 344 (434)
|||+..... ...++.++.|.+||+.+|+||.....|++..+|.+.
T Consensus 298 GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~ 342 (405)
T COG1252 298 GDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYK 342 (405)
T ss_pred eccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence 999987653 223478899999999999999999888766666653
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=323.87 Aligned_cols=301 Identities=21% Similarity=0.281 Sum_probs=234.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|||||||+||+.+|..|.+.+. +|+|||+++++.|. +.+............. .......+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~---~ItlI~~~~~~~~~-~~l~~~~~g~~~~~~~-----------~~~~~~~~~ 73 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKY---NITVISPRNHMLFT-PLLPQTTTGTLEFRSI-----------CEPVRPALA 73 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCC---eEEEEcCCCCcchh-hhHHHhcccCCChHHh-----------HHHHHHHhc
Confidence 46899999999999999998865434 49999999876653 3322111110000000 012234455
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEc----------cCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLS----------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~----------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
..+++++.+ +|+.||++.+.|.+ .++.++.||+||||||+.+..++ +||.. ..++.++++.++..
T Consensus 74 ~~~~~~i~~-~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~---ipG~~-e~~~~~~~~~~a~~ 148 (424)
T PTZ00318 74 KLPNRYLRA-VVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN---IPGVE-ERAFFLKEVNHARG 148 (424)
T ss_pred cCCeEEEEE-EEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC---CCCHH-HcCCCCCCHHHHHH
Confidence 678888886 99999999999887 45668999999999999998777 57654 35677888998888
Q ss_pred HHHHHHhC---------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCeEEEEccCCccCCccCC
Q 013914 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKI--------------NNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 ~~~~l~~~---------------~~~~v~ViG~g~~~~e~a~~l~~--------------~g~~v~lv~~~~~~~~~~~~ 204 (434)
+++.+.++ ..++++|||+|++|+|+|..|.+ .+.+|+++++.+++++. ++
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~ 227 (424)
T PTZ00318 149 IRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FD 227 (424)
T ss_pred HHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CC
Confidence 77765421 12489999999999999999876 37899999999999885 79
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDD 283 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~ 283 (434)
+.+.+.+.+.|++.||+++++++|+++.. + .+.+++|+++++|.+|+++|.+|+..+...++.. ++|+|.||+
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~ 301 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDD 301 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCC
Confidence 99999999999999999999999999975 2 4678899999999999999999985433445555 578999999
Q ss_pred CCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 284 FFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 284 ~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
++|+ ++|||||+|||+..+.. ..++.+..|.+||+.+|+||.+...++
T Consensus 302 ~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 302 HLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 9995 99999999999986432 122678889999999999999877654
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=307.11 Aligned_cols=305 Identities=23% Similarity=0.318 Sum_probs=236.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||+||+.+|..|+++..+..+|+|||+++.+.|... +. .+...... .. .......+++++.+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~-~~~~g~~~--~~--------~~~~~~~~~~~~~g 68 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LP-GMIAGHYS--LD--------EIRIDLRRLARQAG 68 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hh-HHHheeCC--HH--------HhcccHHHHHHhcC
Confidence 589999999999999999765334567999999988766532 11 11111000 00 01123456677789
Q ss_pred cEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh-----C
Q 013914 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-----K 161 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-----~ 161 (434)
++++.+ .|+.+|++.++|.+.+++++.||+||||||+.|..|+ ++|. .++++.+++.+++....+.+.. .
T Consensus 69 v~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~---i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 69 ARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSG---VEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred CEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCCCCC---CCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 999986 8999999999999999988999999999999998887 5663 4667778888877764333321 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh----CC--CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKI----NN--IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~----~g--~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
..++++|+|+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++++.+.+.+.+++.||++++++.+++++.
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~-- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD-- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC--
Confidence 35799999999999999999975 34 589999 56677665 7889999999999999999999999998864
Q ss_pred CCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCC-CCCcEEEecccccccccccCcceecc
Q 013914 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVE 313 (434)
Q Consensus 236 ~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~ 313 (434)
+ .+.+.+|+++++|.+++|+|.+|+..+...++.. .+|++.||+++|| ++|+|||+|||+..+... ..+
T Consensus 220 ~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~ 290 (364)
T TIGR03169 220 G----ALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPK 290 (364)
T ss_pred C----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCC
Confidence 2 4677889999999999999999997766666666 5789999999998 999999999999764321 114
Q ss_pred cHHHHHHHHHHHHHHHhccCCCCcccCC
Q 013914 314 HVDHARKSAEQAVKTIMATEGGKTVTGY 341 (434)
Q Consensus 314 ~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 341 (434)
.+..|..||+.+|+||.....+++..+|
T Consensus 291 ~~~~A~~~g~~~a~ni~~~l~g~~~~~~ 318 (364)
T TIGR03169 291 AGVYAVRQAPILAANLRASLRGQPLRPF 318 (364)
T ss_pred chHHHHHhHHHHHHHHHHHhcCCCCCCC
Confidence 6778999999999999987766544444
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=270.23 Aligned_cols=397 Identities=21% Similarity=0.248 Sum_probs=266.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CC-------CCccCccccCCCCC-----CCCCCcc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YE-------RPALSKAYLFPEGT-----ARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~-------~~~~~~~~~~~~~~-----~~~~~~~ 67 (434)
.+||.+|||||.+||+||.+++..|.+ |.++|--...| |. -.++.+.+++.... +....|.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~k---V~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAK---VACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCc---EEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 369999999999999999999999987 78776432211 11 11233333332211 1111111
Q ss_pred cccCCCCCC-CChhhH-------hhcC----cEEEcCCeeEEEE-----CCCCEEEc--cCC--cEEEcceEEEecCCCc
Q 013914 68 VCVGSGGER-LLPEWY-------KEKG----IELILSTEIVRAD-----IASKTLLS--ATG--LIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~-~~~~~~-------~~~~----v~~~~~~~v~~i~-----~~~~~v~~--~~~--~~~~~d~lvlAtG~~~ 126 (434)
+........ .+.... +..+ ++++. ..|.-++ .+.+++.. .++ +.+++++++||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~Lre-KkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLRE-KKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEecc-ceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC
Confidence 111100001 111111 1111 11111 1222221 12233322 223 3689999999999999
Q ss_pred ccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH
Q 013914 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD 206 (434)
Q Consensus 127 ~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~ 206 (434)
+.|. |||...-. .+++++..... .|.+.+|||+|+.++|+|..|+.+|.+|+++.|+ .++. .||++
T Consensus 174 rYp~---IpG~~Ey~-ITSDDlFsl~~--------~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~Lr-GFDqd 239 (503)
T KOG4716|consen 174 RYPD---IPGAKEYG-ITSDDLFSLPY--------EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLR-GFDQD 239 (503)
T ss_pred CCCC---CCCceeee-ecccccccccC--------CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecc-cccHH
Confidence 9988 57743222 23333332222 4788899999999999999999999999999886 3333 49999
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCccChhhh---hccccc--cC
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPLISLF---KGQVAE--NK 276 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~--~~ 276 (434)
++..+.+.|++.||+|.....+.+++..++|+. .|.. ..++ +-++|.|+||+|+.+.++-+ +.++.. ..
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 999999999999999999988888887666753 2222 2222 45689999999999998865 346665 56
Q ss_pred CcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCcee
Q 013914 277 GGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356 (434)
Q Consensus 277 g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~ 356 (434)
|.|.+|+.-+|++|+|||+||+..... ++...|++.|+..|+.+++... ....|..+|+.+++.+++..
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~--q~~dy~~V~TTVFTPLEy~c 387 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGST--QLMDYDDVATTVFTPLEYGC 387 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcc--eeeeccCCceeeecchhccc
Confidence 889999999999999999999987532 6677899999999999998654 34889999988887777665
Q ss_pred EEeecCCC-------C--EEEE-cCC-C------cccCCCcEEEEEE---eCCEEEEEEEecCCHHHH-HHHHHHHHcCC
Q 013914 357 QFYGDNVG-------D--TVLF-GDN-D------LASATHKFGTYWI---KDGKVVGVFLESGTPEEN-KAIAKVARVQP 415 (434)
Q Consensus 357 ~~~g~~~~-------~--~~~~-~~~-~------~~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~ 415 (434)
. |+++. + ...+ +-. + ....+.+|.|.+. ++.||+|.|++||+|+|+ +.++.|++-++
T Consensus 388 ~--GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~gl 465 (503)
T KOG4716|consen 388 V--GLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGL 465 (503)
T ss_pred c--CCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcc
Confidence 5 66541 1 1111 110 1 0023456677666 678999999999999996 99999999999
Q ss_pred CCCChhhhhccCCCccc
Q 013914 416 SVESLDVLKNEGLSFAS 432 (434)
Q Consensus 416 ~~~~~~~l~~~~~~~~~ 432 (434)
|..|+++...-.+..+.
T Consensus 466 t~~~l~ntigIHPt~aE 482 (503)
T KOG4716|consen 466 TKKDLDNTIGIHPTTAE 482 (503)
T ss_pred cHHHHhhcccccccchh
Confidence 99988876655554443
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=286.47 Aligned_cols=295 Identities=19% Similarity=0.183 Sum_probs=210.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (434)
.+.+||+||||||||++||.+|+++|++ +++||+....+.. ........+|+...... ........+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~---~~~ie~~~~gg~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGGQL--------TTTTEVENWPGDPNDLTGPLLMERMHEH 72 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---eEEEEeecCCCce--------ecCceECCCCCCCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999999986 8999865321110 00011112222111000 0001122344
Q ss_pred HhhcCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~ 157 (434)
....++++..+ .+..++...+.+.+. +...+.||+||+|||+.|+.|+ +||.+ ...++.+.......
T Consensus 73 ~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~---i~g~~~~~~~~v~~~~~~~~~~----- 143 (321)
T PRK10262 73 ATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATCDGFF----- 143 (321)
T ss_pred HHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCC---CCCHHHcCCCcEEEeecCCHHH-----
Confidence 45566777775 677788766664432 2346899999999999998777 45532 34455444333221
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g 237 (434)
..+++++|||+|++|+|+|..|.+.+.+|+++++.+.+. .++.+.+.+.+.+++.||++++++.++++..+ ++
T Consensus 144 ---~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~-~~ 216 (321)
T PRK10262 144 ---YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QM 216 (321)
T ss_pred ---cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-Cc
Confidence 158999999999999999999999999999999987653 35777888899999999999999999999862 33
Q ss_pred cEEEEEeCCC------cEEECCEEEEcccCccChhhhhccccccCCcEEeCC-----CCCCCCCcEEEeccccccccccc
Q 013914 238 EVKEVKLKDG------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 238 ~v~~v~~~~g------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~GD~~~~~~~~~ 306 (434)
.+..+++.++ +++++|.|++++|++||.++++.++..++|+|.||+ +++|++|+|||+|||+..+.
T Consensus 217 ~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~--- 293 (321)
T PRK10262 217 GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY--- 293 (321)
T ss_pred cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCEEEECCCCcccccccCCCCEEECeeccCCCc---
Confidence 4445655432 379999999999999999988766666778999997 78999999999999997543
Q ss_pred CcceecccHHHHHHHHHHHHHHHhccC
Q 013914 307 REMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|..||..|....
T Consensus 294 ------~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 294 ------RQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred ------ceEEEEehhHHHHHHHHHHHH
Confidence 233446778888888876544
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=281.75 Aligned_cols=285 Identities=24% Similarity=0.310 Sum_probs=208.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccc-cCCCCCCCChhhHhh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (434)
|||+|||||+||+++|..|++.|.+ |+|||+++... .+........+|++... .+........+.+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 69 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLK---TLIIEGMEPGG--------QLTTTTEVENYPGFPEGISGPELMEKMKEQAVK 69 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCCc--------ceeecccccccCCCCCCCChHHHHHHHHHHHHH
Confidence 6899999999999999999999987 99999886211 01111111112222110 000111234455677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++. ..|..+++..+ .+.+.++.++.||+||+|||+.|+.|+ +||.+ ...+++.......
T Consensus 70 ~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~-------- 137 (300)
T TIGR01292 70 FGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLG---IPGEDEFLGRGVSYCATCDGP-------- 137 (300)
T ss_pred cCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCC---CCChhhcCCccEEEeeecChh--------
Confidence 8999998 69999998765 455566778999999999999988776 45532 2344433322211
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~ 238 (434)
...+++++|+|+|++|+|+|..+.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++++.++++.. ++.
T Consensus 138 ~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~~~~v~~i~~--~~~ 208 (300)
T TIGR01292 138 FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLWNSTVKEIVG--DNK 208 (300)
T ss_pred hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEeccEEEEEEc--cCc
Confidence 11578999999999999999999999999999999876532 2 3345566776 999999999999986 345
Q ss_pred EEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+..+++. +| +++++|.+++|+|++|+.++++..+.. .+|++.||++++|++||||++|||+....
T Consensus 209 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~--------- 279 (300)
T TIGR01292 209 VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY--------- 279 (300)
T ss_pred EEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCCcEEECCCCccCCCCEEEeecccCcch---------
Confidence 5455542 23 579999999999999999887655444 56899999999999999999999997421
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 013914 313 EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~ 331 (434)
..+..|..+|+.||.+|..
T Consensus 280 ~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 280 RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred hhhhhhhhhHHHHHHHHHh
Confidence 5678899999999999874
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=273.64 Aligned_cols=407 Identities=23% Similarity=0.355 Sum_probs=312.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCC--cccccCCCC--CCCChh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPG--FHVCVGSGG--ERLLPE 80 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~ 80 (434)
+...+|||+|.+..+++...+.. ..++.|.+|..++..||.||++++-+|+...+..... |....|... +.....
T Consensus 178 hvp~liigggtaAfaa~rai~s~-da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSN-DATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccC-CCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 45689999999987777666654 3467799999999999999999999998765543221 111222211 111111
Q ss_pred h---------HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHH
Q 013914 81 W---------YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDD 150 (434)
Q Consensus 81 ~---------~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~ 150 (434)
+ ...-||-+..+..|..||...+.|.+.||.+|.||+++||||.+|+..+.+.-.+. -...+..++.+.|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 1 12347999999999999999999999999999999999999999987765221111 2456888899999
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
+.++...+.+ .+++.|||+|++|.|+|..|.+. |.+|+-+......+...++..++++-.+.+++.||.++.+.
T Consensus 337 F~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 337 FKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred HHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccch
Confidence 9999888875 48999999999999999998764 78999888877777777888899999999999999999999
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc--cCCcEEeCCCCCCCCCcEEEecccccccc
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPM 303 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~--~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 303 (434)
.|.++..+... ..+++.||.++..|+|++|+|-.||++++.. +++. .-|++.||..++. ..|||++||++.+.+
T Consensus 415 ~v~sv~~~~~n--l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCCKN--LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-RENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhccc--eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccceeeecchhhhhc
Confidence 99998773333 5689999999999999999999999999965 5555 5689999999998 789999999999998
Q ss_pred cccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEec-cCceeEEeecCC------CCEE---------
Q 013914 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNV------GDTV--------- 367 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~------~~~~--------- 367 (434)
...|. ++.+|+.+|.-.|+.|+.||.+.. .+|....+||+.. +++.+..+|+-. |..-
T Consensus 492 ~~LGr-RRVehhdhavvSGRLAGENMtgAa-----kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~ 565 (659)
T KOG1346|consen 492 GVLGR-RRVEHHDHAVVSGRLAGENMTGAA-----KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVD 565 (659)
T ss_pred ccccc-eeccccccceeeceeccccccccc-----CCccccceeeeccCcccccceeeecccCCCcceeeeccccccchh
Confidence 87775 455899999999999999999865 7888888999874 556666666422 1000
Q ss_pred ---EEcCC-----------------Ccc--------cCCCcE---EEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCC
Q 013914 368 ---LFGDN-----------------DLA--------SATHKF---GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 416 (434)
Q Consensus 368 ---~~~~~-----------------~~~--------~~~~~~---~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~ 416 (434)
...+. .+. .+...| +.||++++.|+|+.+++-- ..+..+...|..+..
T Consensus 566 ~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~F-nr~~~AR~II~d~kk 644 (659)
T KOG1346|consen 566 QLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNLF-NRIGLARTIINDNKK 644 (659)
T ss_pred hhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhhh-ccchhhHHHhccccc
Confidence 00011 000 011223 4578899999999999643 478888899999888
Q ss_pred CCChhhhh
Q 013914 417 VESLDVLK 424 (434)
Q Consensus 417 ~~~~~~l~ 424 (434)
.+|+..++
T Consensus 645 ~ddlnEvA 652 (659)
T KOG1346|consen 645 YDDLNEVA 652 (659)
T ss_pred hhhHHHHH
Confidence 88877543
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=299.86 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=209.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+||||||||++||.+|++.|.+ |+||++.. .+. +... ....++.++....+......+.+.++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~---v~li~~~~-GG~--~~~~------~~~~~~~~~~~~~~~~l~~~l~~~l~ 278 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLR---TAMVAERI-GGQ--VKDT------VGIENLISVPYTTGSQLAANLEEHIK 278 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCC-CCc--cccC------cCcccccccCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999987 99997531 110 0000 00111111111011111223445566
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++.++.|..++.+.+ .+.+.++..+.||++|+|||+.|+.++ ++|. ...+++.+...+...
T Consensus 279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~---ipG~~~~~~~~v~~~~~~~~~~------ 349 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLG---VPGEKEYIGKGVAYCPHCDGPF------ 349 (515)
T ss_pred HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCC---CCCHHHcCCCeEEEeeccChhh------
Confidence 78999999989999987654 456667778999999999999987776 4553 223455443322211
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g 237 (434)
..+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. .+.+.+.+++ .||++++++.+.++.. +++
T Consensus 350 --~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~ 419 (515)
T TIGR03140 350 --FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQTTEIVG-DGD 419 (515)
T ss_pred --cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCeeEEEEc-CCC
Confidence 1578999999999999999999999999999998776532 2345666765 6999999999999986 335
Q ss_pred cEEEEEeCC---C--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 238 EVKEVKLKD---G--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 238 ~v~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
.+..+++.+ | +++++|.|++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 ~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~-------- 491 (515)
T TIGR03140 420 KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY-------- 491 (515)
T ss_pred EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCCCCCCEEEcccccCCcc--------
Confidence 666676643 2 468999999999999999988655555 56889999999999999999999998654
Q ss_pred cccHHHHHHHHHHHHHHHhcc
Q 013914 312 VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+..|..+|..||.++...
T Consensus 492 -~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 492 -KQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred -ceEEEEEccHHHHHHHHHHH
Confidence 23345778999999888754
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=269.69 Aligned_cols=289 Identities=24% Similarity=0.294 Sum_probs=217.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccc-ccCCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV-CVGSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (434)
+++||+|||||||||+||.++.+.+++. ++|+|+.....+ +.......++|++.. ..+........+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~--~li~~~~~~gg~--------~~~~~~venypg~~~~~~g~~L~~~~~~~a 71 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKV--VLILEGGEPGGQ--------LTKTTDVENYPGFPGGILGPELMEQMKEQA 71 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCc--EEEEecCCcCCc--------cccceeecCCCCCccCCchHHHHHHHHHHH
Confidence 4799999999999999999999998773 566666533211 111113455666554 22222333444555
Q ss_pred hhcCcEEEcCCeeEEEECCC--CEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 83 KEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
...++++.. ..+..++... ..|.+.++. ++++++|||||..++.|..++-+.....+++++..++. .+
T Consensus 72 ~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg--~~------ 141 (305)
T COG0492 72 EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG--FF------ 141 (305)
T ss_pred hhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc--cc------
Confidence 567888888 4888888775 456666776 99999999999999888743222233467888877665 22
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcE
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v 239 (434)
++++++|||+|.+++|.|..|.+.+.+|++++|.+.+.. .+.+.+.++++ +|++++++.+.++.. ++ +
T Consensus 142 -~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~~~~i~ei~G--~~-v 210 (305)
T COG0492 142 -KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLTNTVVKEILG--DD-V 210 (305)
T ss_pred -cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEeCCceeEEec--Cc-c
Confidence 578999999999999999999999999999999987765 23344555555 899999999999987 33 5
Q ss_pred EEEEeCCC----cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceeccc
Q 013914 240 KEVKLKDG----RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 240 ~~v~~~~g----~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~ 314 (434)
..+++.+. +++.+|-+++++|..|+++++.....+ ++|+|.||+.++||+|+|||||||+.... .+
T Consensus 211 ~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~---------rq 281 (305)
T COG0492 211 EGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG---------RQ 281 (305)
T ss_pred ceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc---------cE
Confidence 67777663 268899999999999999988764444 78999999999999999999999998764 24
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 013914 315 VDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~ 332 (434)
+..|..+|..||.++...
T Consensus 282 i~ta~~~G~~Aa~~a~~~ 299 (305)
T COG0492 282 IATAAGDGAIAALSAERY 299 (305)
T ss_pred EeehhhhHHHHHHHHHHH
Confidence 556667888888777654
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=294.59 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=204.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|.+.|||+||||||||++||.+|++.|++ |+|||++...+. +........++++....+......+.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~---V~liE~~~~GG~--------~~~~~~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLD---TLIIEKDDFGGQ--------ITITSEVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCce--------EEeccccccCCCCcCCCHHHHHHHHHHH
Confidence 34579999999999999999999999887 999999753211 0000111112221111010111223344
Q ss_pred HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~ 156 (434)
+++.+++++. ..|+.++.+.+ .+.+.++ .+.++++|+|||+.|+.|+ ++|. ...+++++.......
T Consensus 70 ~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~---ipG~~~~~~~~v~~~~~~~~~~---- 140 (555)
T TIGR03143 70 AQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLG---FPGEEEFTGRGVAYCATCDGEF---- 140 (555)
T ss_pred HHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCC---CCCHHHhCCceEEEEeecChhh----
Confidence 5567899875 58888887654 3445444 6899999999999998887 4553 234555544332211
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
..+++++|||+|++|+|+|..|.+.|.+|+++.+.+.+.. ..... .+.+++.||++++++.|+++.. +
T Consensus 141 ----~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~~---~~~~~~~gV~i~~~~~V~~i~~--~ 208 (555)
T TIGR03143 141 ----FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLIA---EKVKNHPKIEVKFNTELKEATG--D 208 (555)
T ss_pred ----cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHHH---HHHHhCCCcEEEeCCEEEEEEc--C
Confidence 1579999999999999999999999999999999876532 33322 3334557999999999999975 3
Q ss_pred CcEEEEE---eCCCcEE----ECCE----EEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 237 GEVKEVK---LKDGRTL----EADI----VVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 237 g~v~~v~---~~~g~~~----~~D~----vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
+.+..+. ..+|++. ++|. |++++|++|++++++.++.+ ++|+|.||+++||++|+|||+|||+....
T Consensus 209 ~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~- 287 (555)
T TIGR03143 209 DGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL- 287 (555)
T ss_pred CcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCccccCCCCEEEceeccCCCc-
Confidence 4443333 2456543 3676 99999999999998876666 57899999999999999999999975321
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+..|..+|+.||.+|...
T Consensus 288 --------~~v~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 288 --------RQVVTAVADGAIAATSAERY 307 (555)
T ss_pred --------chheeHHhhHHHHHHHHHHH
Confidence 35667889999999998643
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=292.30 Aligned_cols=289 Identities=22% Similarity=0.283 Sum_probs=212.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||+||||||||++||.+|+++|++ |+||++.....+ ........++++....+......+...+++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~---v~li~~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 278 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIR---TGIVAERFGGQV---------LDTMGIENFISVPETEGPKLAAALEEHVKE 278 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCee---------eccCcccccCCCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999987 899986411000 000011112222111111112344556677
Q ss_pred cCcEEEcCCeeEEEECCC--CEEEccCCcEEEcceEEEecCCCcccccCCCCCCC---CCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~---~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++.++.+..++... ..+.+.++.++.||++|+|||+.|+.++ +||. ....+++....+...
T Consensus 279 ~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~---ipG~~~~~~~~v~~~~~~~~~~------- 348 (517)
T PRK15317 279 YDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMN---VPGEDEYRNKGVAYCPHCDGPL------- 348 (517)
T ss_pred CCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCC---CCCHHHhcCceEEEeeccCchh-------
Confidence 899999988999998864 3566677778999999999999988776 4553 234454443222211
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.++++++|||+|++|+|+|..|+..+.+|+++.+.+.+.. + +.+.+.+.+ .||++++++.+.++.. ++++
T Consensus 349 -~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~ 419 (517)
T PRK15317 349 -FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDK 419 (517)
T ss_pred -cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCc
Confidence 1578999999999999999999999999999998876643 2 344555555 6999999999999986 3466
Q ss_pred EEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+..+++. +| +++++|.+++++|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~--------- 490 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGATSVPGVFAAGDCTTVPY--------- 490 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCCCCCCEEECccccCCCC---------
Confidence 6666654 33 358999999999999999988655555 56899999999999999999999998654
Q ss_pred ccHHHHHHHHHHHHHHHhccC
Q 013914 313 EHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.+..|..+|..||.++...+
T Consensus 491 k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 491 KQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CEEEEhhhhHHHHHHHHHHHH
Confidence 345667889999998887654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=285.48 Aligned_cols=286 Identities=21% Similarity=0.237 Sum_probs=206.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||+||+++|..|++.|++ |+|+|+++.... .+.. .++.+... ........+.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~---V~vie~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~ 194 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHS---VTVFEALHKPGG--------VVTY----GIPEFRLP--KEIVVTEIKTLK 194 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCCCc--------Eeee----cCCCccCC--HHHHHHHHHHHH
Confidence 358999999999999999999999987 999999864221 1100 01111000 000112234566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH---
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK--- 159 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~--- 159 (434)
+.|++++.+..+ .+.+.+.+. ...||+||+|||+ .|+.++ ++|.+..++++..++.+...+.....
T Consensus 195 ~~gv~~~~~~~v------~~~v~~~~~-~~~yd~viiAtGa~~p~~~~---ipG~~~~gv~~~~~~l~~~~~~~~~~~~~ 264 (449)
T TIGR01316 195 KLGVTFRMNFLV------GKTATLEEL-FSQYDAVFIGTGAGLPKLMN---IPGEELCGVYSANDFLTRANLMKAYEFPH 264 (449)
T ss_pred hCCcEEEeCCcc------CCcCCHHHH-HhhCCEEEEeCCCCCCCcCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 789999988543 233444333 3579999999998 677776 67877778887665544332211100
Q ss_pred ----hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 160 ----AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 160 ----~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
...+++++|||+|++|+|+|..+.+.|.+|+++++.++... +. .....+.+++.||++++++.+.++..++
T Consensus 265 ~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~~--~~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 265 ADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM---TA--RVEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred cCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC---CC--CHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 12468999999999999999999999999999998764211 11 1223356788999999999999998655
Q ss_pred CCcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEE
Q 013914 236 DGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 236 ~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
+|++..+++. +| .++++|.||+|+|+.|++.+++. ++.. .+|+|.||+++||+.|+||
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~Vf 419 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVF 419 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEE
Confidence 6766666543 23 26999999999999999987754 5666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|+|||+..+ .++..|+.+|+.||.+|..
T Consensus 420 A~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 420 AGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred EecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 999998643 4678899999999999864
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=281.47 Aligned_cols=290 Identities=22% Similarity=0.241 Sum_probs=207.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.+||+||||||||++||.+|+++|++ |+|+|+.+..+ +++. ..+|.+... .........++++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~~l~-~~~~~~~~~~~~~ 202 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD---VTIFEALHEPG--------GVLV----YGIPEFRLP-KETVVKKEIENIK 202 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------Ceee----ecCCCccCC-ccHHHHHHHHHHH
Confidence 358999999999999999999999987 99999876421 1110 011111100 0001122345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH---
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI--- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l--- 158 (434)
+.|++++.++.+ .+.+.+.+. ..+.||+|+||||+ .|+.++ ++|.+.+++++..++.+...+....
T Consensus 203 ~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~ 273 (464)
T PRK12831 203 KLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKFMG---IPGENLNGVFSANEFLTRVNLMKAYKPE 273 (464)
T ss_pred HcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCCCC---CCCcCCcCcEEHHHHHHHHHhccccccc
Confidence 789999998644 223333332 23579999999998 587776 6888878888766554443221100
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+|+|..+.+.|.+|+++.+.+. .++ ... ..+ +.+++.||++++++.+.++..+
T Consensus 274 ~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~~~~~~~i~~~ 347 (464)
T PRK12831 274 YDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDLLTNPVEILGD 347 (464)
T ss_pred ccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEecccceEEEec
Confidence 012578999999999999999999999999999998653 222 111 111 3457789999999999999865
Q ss_pred CCCcEEEEEeC------------------CCc--EEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCCC-CCCCCC
Q 013914 235 ADGEVKEVKLK------------------DGR--TLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDF-FKTSAD 290 (434)
Q Consensus 235 ~~g~v~~v~~~------------------~g~--~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~-~~t~~~ 290 (434)
++|++..+++. +|+ ++++|.||+|+|+.|++.++.. ++.. .+|.|.||++ ++|+.|
T Consensus 348 ~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~p 427 (464)
T PRK12831 348 ENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKE 427 (464)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCC
Confidence 56776665542 222 6999999999999999987753 5655 5688999998 999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 428 gVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 428 GVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998754 4578899999999999987654
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=262.44 Aligned_cols=388 Identities=25% Similarity=0.260 Sum_probs=296.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcCc
Q 013914 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGI 87 (434)
Q Consensus 8 vvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 87 (434)
++|||+|++|+++|..+++.. +..+++++..+....|.++.++.............. .... +..+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i 68 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLL-LAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLR----------YPPR-FNRATGI 68 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcC-CCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhc----------ccch-hHHhhCC
Confidence 589999999999999988875 367799999988777777766554443322211110 1111 2246689
Q ss_pred EEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEE
Q 013914 88 ELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAV 167 (434)
Q Consensus 88 ~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ 167 (434)
++..++.+..+++..+.+.+.++ .+.||+|++|||++|..++ +.....+++.+...+...++..... .++++
T Consensus 69 ~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 140 (415)
T COG0446 69 DVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP-----ISDWEGVVTLRLREDAEALKGGAEP--PKDVV 140 (415)
T ss_pred EEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC-----ccccCceEEECCHHHHHHHHHHHhc--cCeEE
Confidence 99999999999999999999888 8999999999999998765 3445678999999999988877653 58999
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE-EEeCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE-VKLKD 246 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~-v~~~~ 246 (434)
|+|+|++|+|+|..+.+.|.+|++++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...+
T Consensus 141 vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~ 220 (415)
T COG0446 141 VVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGID 220 (415)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeC
Confidence 99999999999999999999999999999999873228899999999999999999999999998732221211 67788
Q ss_pred CcEEECCEEEEcccCccChhhhhccc--cc-cCCcEEeCCCCCCC-CCcEEEecccccccccccCcceecccHHHHHHHH
Q 013914 247 GRTLEADIVVVGVGGRPLISLFKGQV--AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 247 g~~~~~D~vi~a~G~~p~~~~~~~~~--~~-~~g~i~vd~~~~t~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
+..+++|.+++++|.+||+.+.+... .. .+|++.||++++|+ .++|||+|||+..+....+.....+++..|..++
T Consensus 221 ~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~ 300 (415)
T COG0446 221 GEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG 300 (415)
T ss_pred CcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence 88999999999999999988887654 33 67889999999997 9999999999998876544555668999999999
Q ss_pred HHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC-CE-------EEEcCCCcc--cCCCc--EEEEE--EeC
Q 013914 323 EQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DT-------VLFGDNDLA--SATHK--FGTYW--IKD 388 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-~~-------~~~~~~~~~--~~~~~--~~~~~--~~~ 388 (434)
+.++.++.+. . ......++.++..++......|.+.. +. ...+..... .+... ..+.. ...
T Consensus 301 ~i~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (415)
T COG0446 301 RIAAENIAGA-L----RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVGIKLVGDADT 375 (415)
T ss_pred HHHHHHhccc-c----ccccccCceEEEEcCeEEEEecCCcccccceeeeEEEeccCcccccccCCCCeEEEEEEEcCcc
Confidence 9999999875 1 34456778888889988888887764 11 111111111 11111 22222 267
Q ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCChh
Q 013914 389 GKVVGVFLESGTPEENKAIAKVARVQPSVESLD 421 (434)
Q Consensus 389 ~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~ 421 (434)
++++|++. -.....+..+..++..+.++.++.
T Consensus 376 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 407 (415)
T COG0446 376 GRILGGQE-LEVLKRIGALALAIGLGDTVAELD 407 (415)
T ss_pred cceehhhh-HHHHhhhhhhhhhhhhcCchhhhh
Confidence 88888887 222234578888888888887443
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.07 Aligned_cols=282 Identities=24% Similarity=0.317 Sum_probs=194.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+||||||||++||.+|+++|++ |+|+|+.+..+. .+. ..+|.+... ........+++.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~---VtV~Ek~~~~GG--------~lr----~~IP~~Rlp--~evL~~die~l~ 600 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHP---VTVFEREENAGG--------VVK----NIIPQFRIP--AELIQHDIEFVK 600 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecccccCc--------cee----eeccccccc--HHHHHHHHHHHH
Confidence 357999999999999999999999987 999999865321 110 012222110 000112335667
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecC-HHHHHHHHHHHHhC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLRE-IDDADKLVEAIKAK 161 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~-~~~~~~~~~~l~~~ 161 (434)
+.|+++..++.+ .++ +.+.....||+||||||+.+. .++ ++|.+ .++++..+ +.+.......+ .
T Consensus 601 ~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~---IpG~~-~gV~saldfL~~~k~~~~~~--~ 666 (1019)
T PRK09853 601 AHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLK---LEGGN-QNVIKALPFLEEYKNKGTAL--K 666 (1019)
T ss_pred HcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCC---CCCcc-CCceehHHHHHHHhhhcccc--c
Confidence 789999998665 222 223334569999999999853 333 56654 44553221 11111111111 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-C-CeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKIN-N-IDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~-g-~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.+++|+|||+|++|+|+|..+.+. | .+|+++.+.+. .++. .+.+ +.+. .+.||++++.+.+.++.. +|+
T Consensus 667 ~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~~eE----le~A-leeGVe~~~~~~p~~I~~--dG~ 738 (1019)
T PRK09853 667 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-WREE----YEEA-LEDGVEFKELLNPESFDA--DGT 738 (1019)
T ss_pred CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-cHHH----HHHH-HHcCCEEEeCCceEEEEc--CCc
Confidence 478999999999999999998887 4 48999998763 3432 2333 3333 357999999988888863 332
Q ss_pred E----------------EEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 239 V----------------KEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 239 v----------------~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+ ..+...++.++++|.||+|+|.+|+++++.. ++.. .+|++.||+++||+.|+|||+|||+.
T Consensus 739 l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~ 818 (1019)
T PRK09853 739 LTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQR 818 (1019)
T ss_pred EEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEecccc
Confidence 2 2223334468999999999999999998854 5665 56889999999999999999999986
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
.+ ..+..|+.+|+.||++|++...
T Consensus 819 Gp----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 819 GP----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred Cc----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 54 4577899999999999987653
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=286.70 Aligned_cols=289 Identities=22% Similarity=0.255 Sum_probs=208.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+||||||||++||.+|+++|++ |+|+|+.+... +++. ..+|.+... ........++++
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~---V~v~e~~~~~G--------G~l~----~gip~~rlp--~~~~~~~~~~l~ 492 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYD---VTVFEALHEIG--------GVLK----YGIPEFRLP--KKIVDVEIENLK 492 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------Ceee----ecCCCCCCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 99999975421 1111 011111110 000122335567
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI---- 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l---- 158 (434)
+.|++++.++.+ .+.+.+++.....||++|||||+ .|+.++ ++|.+.+++++..++.....+....
T Consensus 493 ~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~ 563 (752)
T PRK12778 493 KLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNFMN---IPGENSNGVMSSNEYLTRVNLMDAASPDS 563 (752)
T ss_pred HCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCCCCCCcEEHHHHHHHHhhcccccccc
Confidence 789999988543 23444444445679999999999 577666 6888778888766554433221110
Q ss_pred --HhCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 --KAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 --~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++++|||+|++|+|+|..+.+.|.+ |+++++.+.. ++. ...+ + +.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~-~~~e----~-~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 564 DTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPA-RLEE----V-KHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred cCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----H-HHHHHcCCEEEecCcceEEEEC
Confidence 012468999999999999999999999987 9999987542 222 1111 1 3467889999999999999775
Q ss_pred CCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCCCCCCCCCc
Q 013914 235 ADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 235 ~~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
++|++..+++. +| .++++|.||+|+|++|+..++.. ++.. .+|+|.||++++|+.|+
T Consensus 638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~g 717 (752)
T PRK12778 638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPG 717 (752)
T ss_pred CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCC
Confidence 56776666542 22 25899999999999999876643 4555 56889999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
|||+|||+..+ ..+..|+.+|+.||.+|...+.
T Consensus 718 VfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 718 IYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999754 4577899999999999986543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=265.68 Aligned_cols=287 Identities=22% Similarity=0.240 Sum_probs=200.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+||+++|..|++.|++ |+|+|+++... +++.. .++.+... ........+++++
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~---V~lie~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~l~~ 202 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYD---VTIFEARDKAG--------GLLRY----GIPEFRLP--KDIVDREVERLLK 202 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCC--------cEeec----cCCCccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999886 99999986532 01100 01111000 0001223456677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh-CC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-KK 162 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-~~ 162 (434)
.+++++.++.+. +.+.+.+. .+.||+||+|||+. |+.++ ++|.+.+++++...+............ ..
T Consensus 203 ~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtGa~~~~~~~---i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~ 272 (457)
T PRK11749 203 LGVEIRTNTEVG------RDITLDEL-RAGYDAVFIGTGAGLPRFLG---IPGENLGGVYSAVDFLTRVNQAVADYDLPV 272 (457)
T ss_pred cCCEEEeCCEEC------CccCHHHH-HhhCCEEEEccCCCCCCCCC---CCCccCCCcEEHHHHHHHHhhccccccCCC
Confidence 899999886541 22333333 37899999999985 55555 677666677754333222111000001 14
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
+++++|||+|++|+|+|..+.+.|. +|+++.+.+.. ++. .. ...+.+++.||++++++.+.++..+ ++.+.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~ 345 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGD-EGRVT 345 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEec-CCceE
Confidence 7899999999999999999999997 89999986542 332 11 2345678899999999999999863 33323
Q ss_pred EEEeC-------------------CCcEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-CCCCCCCcEEEecc
Q 013914 241 EVKLK-------------------DGRTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSADDVYAVGD 297 (434)
Q Consensus 241 ~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~iya~GD 297 (434)
++++. +++++++|.||+|+|++|+..++.. ++.. .+|+|.||+ +++|++|+|||+||
T Consensus 346 ~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD 425 (457)
T PRK11749 346 GVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGD 425 (457)
T ss_pred EEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCC
Confidence 33321 2347999999999999999877642 4555 578999998 89999999999999
Q ss_pred cccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 298 VATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+..+ ..+..|..+|+.||.+|...+.+
T Consensus 426 ~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 426 IVTGA----------ATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred cCCCc----------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99542 46788999999999999876654
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-32 Score=278.13 Aligned_cols=288 Identities=19% Similarity=0.189 Sum_probs=205.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||.+|++.|++ |+|+|+.+..+ +++. ..+|.+.... .......+.++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~---VtVfE~~~~~G--------G~l~----yGIP~~rlp~--~vi~~~i~~l~~ 368 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFP---VTVFEAFHDLG--------GVLR----YGIPEFRLPN--QLIDDVVEKIKL 368 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEeeCCCCC--------ceEE----ccCCCCcChH--HHHHHHHHHHHh
Confidence 58999999999999999999999987 99999986422 1111 1123222110 001223455677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHH-----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAI----- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l----- 158 (434)
.|++++.++.+ .+.+.+++.....||+++||||+. |+.++ +||.+.+++++..++.....+....
T Consensus 369 ~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr~l~---IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~ 439 (944)
T PRK12779 369 LGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPTFMN---VPGEHLLGVMSANEFLTRVNLMRGLDDDYE 439 (944)
T ss_pred hcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCCcCC---CCCCcCcCcEEHHHHHHHHHhhcccccccc
Confidence 89999887443 345666555556799999999994 77666 7888888898766655443322111
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++|+|||+|.+|+++|..+.+.|.+|+++.+.+. .++ .. ...+.. ..+.||+++++..++++..+
T Consensus 440 ~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp----a~-~~e~~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 440 TPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP----AR-VEELHH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCccccc----cc-HHHHHH-HHHCCCEEEeCcceEEEEec
Confidence 112468999999999999999999999999999988753 222 11 122323 34679999999999999764
Q ss_pred CC-CcEEEEEe---------C--------CC--cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-CCCCCCC
Q 013914 235 AD-GEVKEVKL---------K--------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-FFKTSAD 290 (434)
Q Consensus 235 ~~-g~v~~v~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-~~~t~~~ 290 (434)
++ +.+..+++ . +| .++++|.||+|+|+.|+..+... ++.. .+|.|.||+ +++|+.|
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~p 593 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIK 593 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCC
Confidence 32 34544432 1 22 36999999999999999765433 4555 578899997 5899999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 594 gVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 594 GVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999754 4578899999999999976543
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=253.22 Aligned_cols=290 Identities=23% Similarity=0.286 Sum_probs=199.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+|||+|++|+++|..|++.|.+ |+++|+.+.... ++... .+.+.. .........+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg--------~~~~~----~~~~~~--~~~~~~~~~~~l~ 79 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYE---VHVYDKLPEPGG--------LMLFG----IPEFRI--PIERVREGVKELE 79 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCc--------eeeec----Cccccc--CHHHHHHHHHHHH
Confidence 357999999999999999999999886 999999865321 11000 000000 0000011233455
Q ss_pred hcCcEEEcCCeeEEEEC----CCC-----EEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 EKGIELILSTEIVRADI----ASK-----TLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~----~~~-----~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
+.+++++.++.+..++. ... .+..+ +..+.||+||||||+ .|+.|+ +||.+.+++++.. .....
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~~~~---ipg~~~~~v~~~~--~~~~~ 153 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSRKLG---IPGEDLPGVYSAL--EYLFR 153 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCCcCC---CCCccccCceeHH--HHHHH
Confidence 56899998877755432 011 11111 124789999999999 466666 5776666776542 22222
Q ss_pred HHHH---------HHhCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEE
Q 013914 154 LVEA---------IKAKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 154 ~~~~---------l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
+... .....+++++|+|+|++|+|+|..|...|.+ |+++.+.+..... . .....+.|+++||+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~-~----~~~~~~~l~~~gi~i~ 228 (352)
T PRK12770 154 IRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAP-A----GKYEIERLIARGVEFL 228 (352)
T ss_pred hhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCC-C----CHHHHHHHHHcCCEEe
Confidence 2211 0011258999999999999999999999987 9999876543221 1 1334456889999999
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------------------CCCcEEECCEEEEcccCccChhhhh--ccccc-cCCcEE
Q 013914 224 KGTVAVGFTTNADGEVKEVKL--------------------KDGRTLEADIVVVGVGGRPLISLFK--GQVAE-NKGGIE 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~~~~D~vi~a~G~~p~~~~~~--~~~~~-~~g~i~ 280 (434)
+++.+.+++. ++++..+++ .+++++++|.+++++|++|++.+.. .++.+ .+|++.
T Consensus 229 ~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~ 306 (352)
T PRK12770 229 ELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIV 306 (352)
T ss_pred eccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEe
Confidence 9999999875 344434432 1234799999999999999988765 35555 567899
Q ss_pred eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 281 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
||++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+
T Consensus 307 vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 307 VDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred eCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 457789999999999987654
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-32 Score=242.68 Aligned_cols=295 Identities=21% Similarity=0.348 Sum_probs=216.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|||+|+|.+|.+.+..|....++ |++|++..++.|. |.+...-...-. +.+. .+.......
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~Yd---V~vVSPRnyFlFT-PLLpS~~vGTve---~rSI--------vEPIr~i~r 118 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYD---VTVVSPRNYFLFT-PLLPSTTVGTVE---LRSI--------VEPIRAIAR 118 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccc---eEEeccccceEEe-eccCCcccccee---ehhh--------hhhHHHHhh
Confidence 468999999999999999888876555 9999999875543 211110000000 0000 111122222
Q ss_pred h--cCcEEEcCCeeEEEECCCCEEEc----cCC----cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHH
Q 013914 84 E--KGIELILSTEIVRADIASKTLLS----ATG----LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADK 153 (434)
Q Consensus 84 ~--~~v~~~~~~~v~~i~~~~~~v~~----~~~----~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 153 (434)
. .++.++. .+.+.+|++.+.|++ .++ ..+.|||||+|+|+.++.+. +||.. .+-+.++...++++
T Consensus 119 ~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFg---ipGV~-e~~~FLKEv~dAqe 193 (491)
T KOG2495|consen 119 KKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFG---IPGVE-ENAHFLKEVEDAQE 193 (491)
T ss_pred ccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCC---CCchh-hchhhhhhhhHHHH
Confidence 2 2566766 488999999998765 233 36899999999999998777 57654 55667889999999
Q ss_pred HHHHHHhC---------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCeEEEEccCCccCCccCC
Q 013914 154 LVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKIN--------------NIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 154 ~~~~l~~~---------------~~~~v~ViG~g~~~~e~a~~l~~~--------------g~~v~lv~~~~~~~~~~~~ 204 (434)
++..+-.+ +-.+++|||||++|+|+|.+|+.. -.+||+++..|.+++ +|+
T Consensus 194 IR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFd 272 (491)
T KOG2495|consen 194 IRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFD 272 (491)
T ss_pred HHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHH
Confidence 87665321 224789999999999999999864 368999999999998 589
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh--hhhccccc-cCCcE
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAE-NKGGI 279 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~--~~~~~~~~-~~g~i 279 (434)
..+.++.++.+.+.||++..++.|+.+.. +-..+...+| +++++-+++|+||..|..- -+-..+.. .+.++
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~----~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L 348 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTE----KTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGL 348 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecC----cEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceee
Confidence 99999999999999999999999999864 2245555566 4789999999999776543 22222222 24489
Q ss_pred EeCCCCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 280 ETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 280 ~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
.||++||. +.+||||+|||+..+.. .++++.|.+||.++|+++-
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999943322 1578899999999999874
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=276.15 Aligned_cols=290 Identities=21% Similarity=0.212 Sum_probs=203.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||||||+||.+|+++|++ |+|+|+.+..+ +++. ..+|.+.. .........+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~---VtV~E~~~~~G--------G~l~----~gip~~rl--~~e~~~~~~~~l~~ 492 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVD---VTVYEALHVVG--------GVLQ----YGIPSFRL--PRDIIDREVQRLVD 492 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCc--------ceee----ccCCccCC--CHHHHHHHHHHHHH
Confidence 57999999999999999999999987 99999986432 1111 11222110 00011234456778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHH--H--
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA--I-- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--l-- 158 (434)
.|+++..++.+ .+.+...+-. ...||+||||||+. |+.++ +||.+.+++++..++.....+... .
T Consensus 493 ~Gv~~~~~~~v------g~~~~~~~l~~~~~yDaViIATGa~~pr~l~---IpG~~l~gV~~a~~fL~~~~~~~~~~~~~ 563 (1006)
T PRK12775 493 IGVKIETNKVI------GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLG---IPGEFAGQVYSANEFLTRVNLMGGDKFPF 563 (1006)
T ss_pred CCCEEEeCCcc------CCccCHHHHhhccCCCEEEEecCCCCCCCCC---CCCcCCCCcEEHHHHHHHHHhcCcccccc
Confidence 89999988432 1222222211 24699999999994 77766 688777888876555443332100 0
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
....+++|+|||+|++|+++|..+.+.|. .|+++.+....- ++... .-.+.+++.||++++++.+.++..+
T Consensus 564 ~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~--~e~~~a~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 564 LDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI--EEIRHAKEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred ccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH--HHHHHHHhCCCEEEecCCcEEEEeC
Confidence 01257999999999999999999999997 488887653321 11111 1124577899999999999999765
Q ss_pred CCCcEEEEEeC-----------------CC--cEEECCEEEEcccCccChhhhhc--cccc-cCCcEEeCC-----CCCC
Q 013914 235 ADGEVKEVKLK-----------------DG--RTLEADIVVVGVGGRPLISLFKG--QVAE-NKGGIETDD-----FFKT 287 (434)
Q Consensus 235 ~~g~v~~v~~~-----------------~g--~~~~~D~vi~a~G~~p~~~~~~~--~~~~-~~g~i~vd~-----~~~t 287 (434)
++|++.++++. +| .++++|.||+|+|++|++.++.. ++.+ .+|.|.+|+ +++|
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 67777666542 12 25899999999999999876643 4555 568899996 7899
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
++|+|||+|||+..+ .++..|+.+|+.||.+|...+.+
T Consensus 719 s~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 719 NLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999998654 45778999999999998766544
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=257.22 Aligned_cols=293 Identities=22% Similarity=0.267 Sum_probs=198.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|+||+++|..|++.|++ |+|+|+.+... +++. ..++.+... ........+++.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~---V~vie~~~~~G--------G~l~----~gip~~~~~--~~~~~~~~~~~~~ 205 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHK---VTVFERADRIG--------GLLR----YGIPDFKLE--KEVIDRRIELMEA 205 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCCC--------ceee----ecCCcccCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 99999986532 1111 011111100 0001123456777
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHH--HHHHH--H-
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDAD--KLVEA--I- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~--~~~~~--l- 158 (434)
.|++++.++.+. .+.. . +.....||++++|||+. ++.++ ++|.+..++++..++.... .+... .
T Consensus 206 ~gv~~~~~~~v~-~~~~-----~-~~~~~~~d~vvlAtGa~~~~~l~---ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (471)
T PRK12810 206 EGIEFRTNVEVG-KDIT-----A-EELLAEYDAVFLGTGAYKPRDLG---IPGRDLDGVHFAMDFLIQNTRRVLGDETEP 275 (471)
T ss_pred CCcEEEeCCEEC-CcCC-----H-HHHHhhCCEEEEecCCCCCCcCC---CCCccCCCcEEHHHHHHHHHhhhccccccc
Confidence 899999886542 1111 1 11135799999999997 65555 6887777887643322110 00000 0
Q ss_pred -HhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCH----H-HHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 159 -KAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTA----D-IAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 159 -~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~----~-~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
....+++++|||+|++|+|+|..+.+.|. +|++++..+......++. . ......+.+++.||++++++.++++
T Consensus 276 ~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i 355 (471)
T PRK12810 276 FISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEF 355 (471)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEE
Confidence 01257899999999999999999888885 788776554332211000 0 0111345678889999999999999
Q ss_pred EecCCCcEEEEEeC-----CC---------cEEECCEEEEcccCccCh-hhhhc-cccc-cCCcEEeC-CCCCCCCCcEE
Q 013914 232 TTNADGEVKEVKLK-----DG---------RTLEADIVVVGVGGRPLI-SLFKG-QVAE-NKGGIETD-DFFKTSADDVY 293 (434)
Q Consensus 232 ~~~~~g~v~~v~~~-----~g---------~~~~~D~vi~a~G~~p~~-~~~~~-~~~~-~~g~i~vd-~~~~t~~~~iy 293 (434)
.. +++++..|++. +| .++++|.||+|+|.+|+. .+++. ++.. .+|.+.+| ++++|+.|+||
T Consensus 356 ~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVf 434 (471)
T PRK12810 356 EG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVF 434 (471)
T ss_pred Ec-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEE
Confidence 75 46776655432 22 479999999999999985 35543 4555 57889998 79999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 435 a~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 435 AAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred EccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999743 35778999999999999877654
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=261.47 Aligned_cols=280 Identities=20% Similarity=0.251 Sum_probs=187.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+||||||||++||.+|++.|++ |+|+|+++..+. .+.. .+|.+... ........+++.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~---VTV~Ek~~~lGG--------~l~~----~IP~~rlp--~e~l~~~ie~l~~ 599 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGG--------VVKN----IIPEFRIS--AESIQKDIELVKF 599 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe---EEEEecccccCc--------eeee----cccccCCC--HHHHHHHHHHHHh
Confidence 47999999999999999999999987 999999865321 1100 01111100 0001123355667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH-HhCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI-KAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l-~~~~~ 163 (434)
.|++++.+... .+.+.+.....||+|+||||+.+..+. +++|.. .+++. ..+....+.... ....+
T Consensus 600 ~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l--~I~G~~-~~v~~--avefL~~~~~~~~~~~~G 666 (1012)
T TIGR03315 600 HGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPL--RLEGGG-ERVLK--SLEFLRAFKEGPTINPLG 666 (1012)
T ss_pred cCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCC--CcCCCC-cceee--HHHHHHHhhccccccccC
Confidence 79998886321 122223334679999999999853322 256543 34432 222222221110 01258
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-CC-eEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN-NI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~-g~-~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
++|+|||+|++|+|+|..+.+. |. +|+++.+.+. .++. .+.+ +.+. .+.||++++...+.++.. +.+.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~eE----l~~a-leeGVe~~~~~~p~~I~~---g~l~ 737 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SREE----LEEA-LEDGVDFKELLSPESFED---GTLT 737 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHHH----HHHH-HHcCCEEEeCCceEEEEC---CeEE
Confidence 9999999999999999998886 74 8999998763 3332 2333 3333 357999999888877762 2221
Q ss_pred EE--------------EeCCCc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCC-CCCCCCcEEEecccccc
Q 013914 241 EV--------------KLKDGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDF-FKTSADDVYAVGDVATF 301 (434)
Q Consensus 241 ~v--------------~~~~g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~-~~t~~~~iya~GD~~~~ 301 (434)
.. ...+|+ ++++|.||+|+|.+|+.++++. ++.. .+|++.||++ ++|+.|+|||+|||+..
T Consensus 738 v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G 817 (1012)
T TIGR03315 738 CEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG 817 (1012)
T ss_pred EEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC
Confidence 11 112343 6899999999999999998854 5665 5688999986 89999999999999865
Q ss_pred cccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 302 PMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 302 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+ ..+..|+.+|+.||.+|++..
T Consensus 818 P----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 818 P----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred c----------cHHHHHHHHHHHHHHHHhccc
Confidence 4 467889999999999998754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=257.42 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=194.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|+||+++|..|++.|++ |+|+|+++..+ . .+.. .++.+... ........+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~---Vtv~e~~~~~G---G-----~l~~----gip~~~~~--~~~~~~~~~~l~~ 255 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHD---VTIFDANEQAG---G-----MMRY----GIPRFRLP--ESVIDADIAPLRA 255 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCC---c-----eeee----cCCCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999987 99999986532 1 1110 01111100 0001122345667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
.|+++..++.+ .++ +.+.+. ...||++++|||+.+. .++ ++|.+..++++..++........ ....+
T Consensus 256 ~Gv~i~~~~~v-~~d-----v~~~~~-~~~~DaVilAtGa~~~~~~~---ipG~~~~gv~~~~~~l~~~~~~~--~~~~g 323 (652)
T PRK12814 256 MGAEFRFNTVF-GRD-----ITLEEL-QKEFDAVLLAVGAQKASKMG---IPGEELPGVISGIDFLRNVALGT--ALHPG 323 (652)
T ss_pred cCCEEEeCCcc-cCc-----cCHHHH-HhhcCEEEEEcCCCCCCCCC---CCCcCcCCcEeHHHHHHHhhcCC--cccCC
Confidence 89999887543 211 222221 2359999999999863 444 67777677764322211110000 11257
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE--
Q 013914 164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV-- 239 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v-- 239 (434)
++++|||+|++|+|+|..+.+.|. +|+++.+.+. .++. .+.+ +.+ +.+.||++++++.+.++... ++.+
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~e----i~~-a~~eGV~i~~~~~~~~i~~~-~~~~~v 396 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRAE----IEE-ALAEGVSLRELAAPVSIERS-EGGLEL 396 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHH----HHH-HHHcCCcEEeccCcEEEEec-CCeEEE
Confidence 999999999999999999999986 6999998764 3442 2222 223 24579999999999998763 3322
Q ss_pred EEEEeC---------------CCc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCC-CCCCCCCcEEEecccc
Q 013914 240 KEVKLK---------------DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDD-FFKTSADDVYAVGDVA 299 (434)
Q Consensus 240 ~~v~~~---------------~g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~-~~~t~~~~iya~GD~~ 299 (434)
..+.+. +|+ ++++|.||+|+|+.|+++++.. ++.. .+|+|.||+ +++|+.|+|||+|||+
T Consensus 397 ~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~ 476 (652)
T PRK12814 397 TAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCV 476 (652)
T ss_pred EEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcC
Confidence 122221 222 5899999999999999988754 5665 568899997 6899999999999998
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhccCCCCc
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKT 337 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 337 (434)
..+ .++..|+.+|+.||.+|...+.++.
T Consensus 477 ~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 477 TGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 654 4578899999999999987776643
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=245.01 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=198.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|++.|++ |+++|+.+... +++.. .+|.+... ........+++++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~---V~i~e~~~~~g--------G~l~~----gip~~~~~--~~~~~~~~~~~~~ 203 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQ---VVVFDRHPEIG--------GLLTF----GIPSFKLD--KAVLSRRREIFTA 203 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCC--------ceeee----cCccccCC--HHHHHHHHHHHHH
Confidence 57999999999999999999999887 99999986522 11110 11211110 0001223466778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc-ccCCCCCCCCCCCeEEecCHHHH--HHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-LTDFGVEGADAKNIFYLREIDDA--DKLVEA---- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-~~~~~~~g~~~~~v~~~~~~~~~--~~~~~~---- 157 (434)
.|++++.++.+.. .+...+ ....||++|+|||+.+.. ++ ++|.+.+++++..++... ..+...
T Consensus 204 ~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~---i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~ 273 (467)
T TIGR01318 204 MGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGG---LPGEDAPGVLQALPFLIANTRQLMGLPESP 273 (467)
T ss_pred CCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCC---CCCcCCCCcEEHHHHHHHHHHHhcCCCccc
Confidence 8999998865521 122211 124799999999998743 34 788888888865432211 101000
Q ss_pred ---HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 158 ---IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 ---l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
+....+++++|+|+|++|+++|..+.+.|. +||++++.+.. ++. .+.+ .+.+++.||++++++.+.++.
T Consensus 274 ~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~e-----~~~~~~~GV~~~~~~~~~~i~ 347 (467)
T TIGR01318 274 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRRE-----VANAREEGVEFLFNVQPVYIE 347 (467)
T ss_pred cccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHHH-----HHHHHhcCCEEEecCCcEEEE
Confidence 001246899999999999999999999995 79999987653 332 2222 244678899999999999997
Q ss_pred ecCCCcEEEEEeC---------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeC----CCC
Q 013914 233 TNADGEVKEVKLK---------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETD----DFF 285 (434)
Q Consensus 233 ~~~~g~v~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd----~~~ 285 (434)
.+++|++.++++. +| .++++|.||+|+|++|+. .++. .++.. .+|++.|| .++
T Consensus 348 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 348 CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred ECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCc
Confidence 6556666555441 12 368999999999999985 3333 34555 56889999 688
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
+|+.|+|||+|||+..+ ..+..|..+|+.||.+|...
T Consensus 428 ~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754 35678999999999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=252.76 Aligned_cols=287 Identities=18% Similarity=0.241 Sum_probs=197.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||||||++|..|++.|++ |+|+|+.+..+ +++.. .+|.+... ........++++
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~---V~V~E~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~ 388 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA---VTVYDRHPEIG--------GLLTF----GIPAFKLD--KSLLARRREIFS 388 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC--------ceeee----cCCCccCC--HHHHHHHHHHHH
Confidence 357999999999999999999999987 99999986522 11111 11221110 000112345667
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHH--HHHHHHH---H
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREID--DADKLVE---A 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~--~~~~~~~---~ 157 (434)
+.|+++..++.+.. .+...+. ...||++++|||+... .++ +++.+..+++...++. ....+.. .
T Consensus 389 ~~Gv~~~~~~~v~~------~i~~~~~-~~~~DavilAtGa~~~~~l~---i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~ 458 (654)
T PRK12769 389 AMGIEFELNCEVGK------DISLESL-LEDYDAVFVGVGTYRSMKAG---LPNEDAPGVYDALPFLIANTKQVMGLEEL 458 (654)
T ss_pred HCCeEEECCCEeCC------cCCHHHH-HhcCCEEEEeCCCCCCCCCC---CCCCCCCCeEEhHHHHHHHHhhhccCccc
Confidence 78999998865421 1111111 2469999999998643 344 6777777877542211 0001000 0
Q ss_pred ----HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 158 ----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 158 ----l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.....+++++|||+|++|+++|..+.+.|. +|+++.+.+.. ++. .+. ..+.+++.||++++++.++++
T Consensus 459 ~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~~-----e~~~~~~~Gv~~~~~~~~~~i 532 (654)
T PRK12769 459 PEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG-SKK-----EVKNAREEGANFEFNVQPVAL 532 (654)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CHH-----HHHHHHHcCCeEEeccCcEEE
Confidence 001246899999999999999999999986 79999887654 332 222 235578899999999999999
Q ss_pred EecCCCcEEEEEeC---------CC---------c--EEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeCC----C
Q 013914 232 TTNADGEVKEVKLK---------DG---------R--TLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----F 284 (434)
Q Consensus 232 ~~~~~g~v~~v~~~---------~g---------~--~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~ 284 (434)
..+++|++.++++. +| + ++++|.||+|+|+.|+. .+++ .++.+ .+|.|.||+ +
T Consensus 533 ~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~ 612 (654)
T PRK12769 533 ELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYR 612 (654)
T ss_pred EECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccC
Confidence 76556777666541 22 2 59999999999999985 3443 35666 578899986 5
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++|+.|+|||+||++..+ .++..|+.+|+.||.+|...+
T Consensus 613 ~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred cccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999998754 457889999999999997654
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=251.74 Aligned_cols=285 Identities=21% Similarity=0.269 Sum_probs=193.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|+||+++|..|+++|++ |+|+|+++...- .+. ..++.+.. .........++++
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~---v~vie~~~~~gG--------~~~----~~i~~~~~--~~~~~~~~~~~~~ 344 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYE---VTVYESLSKPGG--------VMR----YGIPSYRL--PDEALDKDIAFIE 344 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCc--------eEe----ecCCcccC--CHHHHHHHHHHHH
Confidence 357899999999999999999999987 999999865321 010 00111100 0000112345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh--
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA-- 160 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~-- 160 (434)
+.|++++.++.+.. + +...+ ....||+||+|||+. |+.++ ++|.+..++++. .+....+...+..
T Consensus 345 ~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~---i~G~~~~gv~~a--~~~l~~~~~~~~~~~ 412 (604)
T PRK13984 345 ALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTR---IPGTDHPDVIQA--LPLLREIRDYLRGEG 412 (604)
T ss_pred HCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCC---CCCcCCcCeEeH--HHHHHHHHhhhccCC
Confidence 88999999866531 1 11111 135799999999987 45555 678776777643 3333333333221
Q ss_pred ---CCCCcEEEECCCHHHHHHHHHHHhCCC------eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 161 ---KKNGKAVVVGGGYIGLELSAALKINNI------DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 161 ---~~~~~v~ViG~g~~~~e~a~~l~~~g~------~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
..+++++|||+|++|+|+|..+.+.+. +|+++..... ... ++.... .+.+ +.+.||+++++..+.++
T Consensus 413 ~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~-~~~-~~~~~~-e~~~-~~~~GV~i~~~~~~~~i 488 (604)
T PRK13984 413 PKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERT-FEE-MPADME-EIEE-GLEEGVVIYPGWGPMEV 488 (604)
T ss_pred CcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccC-ccc-CCCCHH-HHHH-HHHcCCEEEeCCCCEEE
Confidence 136899999999999999999998753 7888643211 111 222221 2222 34679999999988888
Q ss_pred EecCCCcEEEEEeC--------CC-----------cEEECCEEEEcccCccChhhhhc----cccccCCcEEeCCCCCCC
Q 013914 232 TTNADGEVKEVKLK--------DG-----------RTLEADIVVVGVGGRPLISLFKG----QVAENKGGIETDDFFKTS 288 (434)
Q Consensus 232 ~~~~~g~v~~v~~~--------~g-----------~~~~~D~vi~a~G~~p~~~~~~~----~~~~~~g~i~vd~~~~t~ 288 (434)
.. +++++..+++. +| +++++|.|++|+|++|+++++.. .+..++|+|.||+++||+
T Consensus 489 ~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts 567 (604)
T PRK13984 489 VI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTS 567 (604)
T ss_pred Ec-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccC
Confidence 65 45666555432 12 36999999999999999988753 243467889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+|+|||+|||+..+ .+..|+.+|+.||.+|...+
T Consensus 568 ~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 568 IPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999754 24668999999999997654
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=244.57 Aligned_cols=294 Identities=23% Similarity=0.275 Sum_probs=196.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|++|+++|..|++.|++ |+|+|+.+.... .+.. .+|.+... ........+++++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~---V~v~e~~~~~gG---~l~~---------gip~~~~~--~~~~~~~~~~~~~ 205 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHT---VTVFEREDRCGG---LLMY---------GIPNMKLD--KAIVDRRIDLLSA 205 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCCCc---eeec---------cCCCccCC--HHHHHHHHHHHHh
Confidence 37999999999999999999999886 999999864321 0000 01111000 0001223456777
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHH-HHHHHHH--HH--
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREID-DADKLVE--AI-- 158 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~--~l-- 158 (434)
.|++++.++.+. .+... +.....||+|++|||+. |+.++ ++|.+.+++++...+. +...... ..
T Consensus 206 ~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~l~---i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~ 275 (485)
T TIGR01317 206 EGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRDLP---IPGRELKGIHYAMEFLPSATKALLGKDFKD 275 (485)
T ss_pred CCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCcCC---CCCcCCCCcEeHHHHHHHHhhhhccccccc
Confidence 899999987653 11111 11235799999999998 77666 6887778888653322 1111100 00
Q ss_pred ---HhCCCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCccC-----C---H--HHHHHHHHHHHhcCcEE-E
Q 013914 159 ---KAKKNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLF-----T---A--DIAAFYEGYYANKGIKI-I 223 (434)
Q Consensus 159 ---~~~~~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~~-----~---~--~~~~~~~~~l~~~GV~~-~ 223 (434)
....+++++|||+|++|+|+|..+.+.| .+|++++..+..+.... + . +......+..+..|+++ +
T Consensus 276 ~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~ 355 (485)
T TIGR01317 276 IIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPRE 355 (485)
T ss_pred cccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceE
Confidence 0125789999999999999988877776 57999988776543211 0 0 12223444445567654 5
Q ss_pred cCCeEEEEEecCCCcEEEEEe--------CCCc-----------EEECCEEEEcccCc-cChhhhhc-cccc-cCCcEE-
Q 013914 224 KGTVAVGFTTNADGEVKEVKL--------KDGR-----------TLEADIVVVGVGGR-PLISLFKG-QVAE-NKGGIE- 280 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~v~~v~~--------~~g~-----------~~~~D~vi~a~G~~-p~~~~~~~-~~~~-~~g~i~- 280 (434)
+++.+.++..++++++..+++ ++|+ ++++|.||+|+|.. |++.++.. ++.. .+|.+.
T Consensus 356 ~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~ 435 (485)
T TIGR01317 356 YSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISA 435 (485)
T ss_pred EecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEe
Confidence 677788887644466666653 1332 69999999999986 88877654 5655 567774
Q ss_pred eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 281 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
+|++++|+.|+|||+|||+..+ ..+..|..+|+.||.+|...+.+
T Consensus 436 ~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 436 GYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred cCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999998653 35677999999999999876654
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=251.40 Aligned_cols=280 Identities=15% Similarity=0.127 Sum_probs=194.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCC-CCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.+||+|||||||||+||.+|++.|++ |+|+|+++...- .+.... .....+...+ .....+.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~---V~liD~~~~~GG-------~~~~~~~~~~g~~~~~~------~~~~~~~l~ 226 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGAR---VILVDEQPEAGG-------SLLSEAETIDGKPAADW------AAATVAELT 226 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCCCCC-------eeeccccccCCccHHHH------HHHHHHHHh
Confidence 57999999999999999999999987 999999865321 011100 0011110000 011222333
Q ss_pred hc-CcEEEcCCeeEEEECCCCEEEc---c-------C----C--cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEec
Q 013914 84 EK-GIELILSTEIVRADIASKTLLS---A-------T----G--LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLR 146 (434)
Q Consensus 84 ~~-~v~~~~~~~v~~i~~~~~~v~~---~-------~----~--~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~ 146 (434)
.. +++++.++.|+.+......... . + . .++.|++||||||+.++.++ ++|.+.+++++..
T Consensus 227 ~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~p---ipG~~~pgV~~~~ 303 (985)
T TIGR01372 227 AMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLV---FANNDRPGVMLAG 303 (985)
T ss_pred cCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCC---CCCCCCCCcEEch
Confidence 34 5999998888887653221110 0 0 1 15899999999999998877 6888888888765
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 147 EIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
....... ......+++++|+|+|++++|+|..|.+.|. .|++++..+.+ ...+.+.+++.||+++.+
T Consensus 304 ~~~~~l~---~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~---------~~~l~~~L~~~GV~i~~~ 371 (985)
T TIGR01372 304 AARTYLN---RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV---------SPEARAEARELGIEVLTG 371 (985)
T ss_pred HHHHHHH---hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---------hHHHHHHHHHcCCEEEcC
Confidence 4443221 1111257899999999999999999999995 57888765433 234567789999999999
Q ss_pred CeEEEEEecCCCcEEEEEeC----CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCC-----CCCCCcEEEe
Q 013914 226 TVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFF-----KTSADDVYAV 295 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~----~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~-----~t~~~~iya~ 295 (434)
+.+.++.. ++.+..|++. ++++++||.|++++|++||++++.. +.. +..|+.. .|+.|+||++
T Consensus 372 ~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~~~~~~~~~~~t~v~gVyaa 444 (985)
T TIGR01372 372 HVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAWDAAIAAFLPGDAVQGCILA 444 (985)
T ss_pred CeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eeeccccCceecCCCCCCeEEe
Confidence 99999976 4555555554 4568999999999999999998753 222 2222221 3679999999
Q ss_pred cccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 296 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
|||++. ..+..|..+|+.||..++...
T Consensus 445 GD~~g~-----------~~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 445 GAANGL-----------FGLAAALADGAAAGAAAARAA 471 (985)
T ss_pred eccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 999976 346678899999999886543
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=221.90 Aligned_cols=289 Identities=21% Similarity=0.274 Sum_probs=206.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.|||+||||||||-+||.+.+|+|.+++ ++-||-. ...+......++-+.....|......+.+..++
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfG----------GQvldT~~IENfIsv~~teGpkl~~ale~Hv~~ 278 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFG----------GQVLDTMGIENFISVPETEGPKLAAALEAHVKQ 278 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhC----------CeeccccchhheeccccccchHHHHHHHHHHhh
Confidence 5999999999999999999999998742 2222211 111111122222222222232223345566677
Q ss_pred cCcEEEcCCeeEEEECC-----CCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
+.++++.....+.+.+. ...|.+++|..++++.+|++||++++..+.++-+....+++.++..++....
T Consensus 279 Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF------ 352 (520)
T COG3634 279 YDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF------ 352 (520)
T ss_pred cCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc------
Confidence 88888876677777663 2468889999999999999999999887743222234678888777766554
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~ 238 (434)
++|+|+|||+|.+|+|.|-.|+..-..||+++-.+.+- .-+.+++.++. .+|+++.+..-++|.. +..+
T Consensus 353 --~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~kl~sl~Nv~ii~na~Ttei~G-dg~k 422 (520)
T COG3634 353 --KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDKLRSLPNVTIITNAQTTEVKG-DGDK 422 (520)
T ss_pred --CCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHHHhcCCCcEEEecceeeEEec-CCce
Confidence 69999999999999999999998888999997433322 12344455544 5799999999999987 3345
Q ss_pred EEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+.++...+ |+ .++-+-|++-+|..||+++++..+++ ..|-|.||.+..||+|+|||+|||...++.
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yK-------- 494 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVPYK-------- 494 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCCceeecCcccCCccc--------
Confidence 66665533 33 46677899999999999999988888 789999999999999999999999988763
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 013914 313 EHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~ 330 (434)
.+-.|+.+|..|+.+.+
T Consensus 495 -QIIIamG~GA~AaL~AF 511 (520)
T COG3634 495 -QIIIAMGEGAKASLSAF 511 (520)
T ss_pred -eEEEEecCcchhhhhhh
Confidence 33344455555554443
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=240.19 Aligned_cols=287 Identities=22% Similarity=0.271 Sum_probs=196.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|++||++|..|++.|++ |+|+|+.+..+ +++.. .+|.+... ........++++
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~---Vtv~e~~~~~G--------G~l~~----gip~~~l~--~~~~~~~~~~~~ 371 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ---VDVFDRHPEIG--------GMLTF----GIPPFKLD--KTVLSQRREIFT 371 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc---EEEEeCCCCCC--------Ceeec----cCCcccCC--HHHHHHHHHHHH
Confidence 358999999999999999999999987 99999987532 11111 11111110 000112345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHH-----HHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDA-----DKLVEA 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~-----~~~~~~ 157 (434)
..|++++.++.+.. .+.+.+ ....||++++|||+.+. .++ +++.+.+++++...+... ..+...
T Consensus 372 ~~Gv~~~~~~~v~~------~~~~~~-l~~~~DaV~latGa~~~~~~~---i~g~~~~gv~~a~~~l~~~~~~~~~~~~~ 441 (639)
T PRK12809 372 AMGIDFHLNCEIGR------DITFSD-LTSEYDAVFIGVGTYGMMRAD---LPHEDAPGVIQALPFLTAHTRQLMGLPES 441 (639)
T ss_pred HCCeEEEcCCccCC------cCCHHH-HHhcCCEEEEeCCCCCCCCCC---CCCCccCCcEeHHHHHHHHHHhhccCccc
Confidence 88999998865421 122211 23569999999998753 333 678777777763222111 000000
Q ss_pred ----HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 158 ----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 158 ----l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+....+++++|+|+|.++++.|..+.+.|. +|+++.+.+.. ++. .+.++ ..+++.||++++++.++++
T Consensus 442 ~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i 515 (639)
T PRK12809 442 EEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRKEV-----VNAREEGVEFQFNVQPQYI 515 (639)
T ss_pred cccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHHHH-----HHHHHcCCeEEeccCCEEE
Confidence 011246899999999999999999989984 89999987654 332 22222 2357889999999999999
Q ss_pred EecCCCcEEEEEe---C------CC-----------cEEECCEEEEcccCccCh-hhhh-ccccc-cCCcEEeCC----C
Q 013914 232 TTNADGEVKEVKL---K------DG-----------RTLEADIVVVGVGGRPLI-SLFK-GQVAE-NKGGIETDD----F 284 (434)
Q Consensus 232 ~~~~~g~v~~v~~---~------~g-----------~~~~~D~vi~a~G~~p~~-~~~~-~~~~~-~~g~i~vd~----~ 284 (434)
..+++|++..+.+ . +| .++++|.||+|+|+.|+. .+++ .++.. .+|.|.+|+ +
T Consensus 516 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~ 595 (639)
T PRK12809 516 ACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLP 595 (639)
T ss_pred EECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccC
Confidence 8655676665533 1 22 268999999999999975 3443 35655 568899986 4
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+||+.|+|||+|||+..+ .++..|+.+|+.||++|...+
T Consensus 596 ~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l 634 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLF 634 (639)
T ss_pred cccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998754 457889999999999998654
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=227.16 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=190.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILGGGVSAGYAAREFAK--QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
.++|+||||||||++||..|++ .|++ |+|+|+.+.. +. ++........+.... ....+..++
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~---Vtv~E~~p~p-gG-------lvr~gvaP~~~~~k~-----v~~~~~~~~ 89 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGAR---VDIIERLPTP-FG-------LVRSGVAPDHPETKN-----VTNQFSRVA 89 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCe---EEEEecCCCC-cc-------eEeeccCCCcchhHH-----HHHHHHHHH
Confidence 5789999999999999999997 4555 9999998742 21 111111011110000 011233445
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCc-ccccCCCCCCCCCCCeEEecCHHHHH-------HH
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDAD-------KL 154 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~-------~~ 154 (434)
...+++++.+..+ .+.+.+++- ...||++|+|||+.+ +.++ +||.+.+++++..++.... .+
T Consensus 90 ~~~~v~~~~nv~v------g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~---IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 90 TDDRVSFFGNVTL------GRDVSLSEL-RDLYHVVVLAYGAESDRRLG---IPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHCCeEEEcCEEE------CccccHHHH-hhhCCEEEEecCCCCCCCCC---CCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 5677888776433 223334333 247999999999986 4555 7888888898765542211 11
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCccCCHHH------
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTADI------ 207 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~--------------------g-~~v~lv~~~~~~~~~~~~~~~------ 207 (434)
...+ ..+++++|||+|++|+++|..|.+. | .+|+++.|....-..+..+++
T Consensus 160 ~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l 237 (491)
T PLN02852 160 PPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGL 237 (491)
T ss_pred hhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhcc
Confidence 1111 1478999999999999999998775 5 469999887642111111111
Q ss_pred -------------------------------HHHHHHHHHh---------cCcEEEcCCeEEEEEec--CCCcEEEEEeC
Q 013914 208 -------------------------------AAFYEGYYAN---------KGIKIIKGTVAVGFTTN--ADGEVKEVKLK 245 (434)
Q Consensus 208 -------------------------------~~~~~~~l~~---------~GV~~~~~~~v~~i~~~--~~g~v~~v~~~ 245 (434)
.+.+.+...+ .+|.|++...+.+|..+ +++++.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~ 317 (491)
T PLN02852 238 KNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLE 317 (491)
T ss_pred CCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEE
Confidence 1122222222 57999999999999742 23677777653
Q ss_pred -----------------CCc--EEECCEEEEcccCc--cChhh-hhc--cccc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 246 -----------------DGR--TLEADIVVVGVGGR--PLISL-FKG--QVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 246 -----------------~g~--~~~~D~vi~a~G~~--p~~~~-~~~--~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+|+ +++||.||.++|++ |+..+ +.. ++.. .+|+|.+|+.++|+.|+|||+|||..
T Consensus 318 ~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~ 397 (491)
T PLN02852 318 RTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKR 397 (491)
T ss_pred EeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEec
Confidence 132 58999999999997 55553 322 3333 67999999888999999999999998
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.+. ..+..++.+|+.++.+|....
T Consensus 398 Gp~---------gvI~t~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 398 GPT---------GIIGTNLTCAEETVASIAEDL 421 (491)
T ss_pred CCC---------CeeeecHhhHHHHHHHHHHHH
Confidence 664 356677788888888887654
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=199.06 Aligned_cols=278 Identities=22% Similarity=0.230 Sum_probs=198.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChh
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPE 80 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 80 (434)
|..+.+|+|||+|||+.+||.++++..++ -+|+|--.... ......+.......++|+|+.... ....+...+
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelk---PllfEG~~~~~---i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELK---PLLFEGMMANG---IAPGGQLTTTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccC---ceEEeeeeccC---cCCCceeeeeeccccCCCCCcccccHHHHHHHHH
Confidence 33456899999999999999999999877 48888643211 111333445556788888875432 223334445
Q ss_pred hHhhcCcEEEcCCeeEEEECCCCEEEc-cCCcEEEcceEEEecCCCcccccCCCCCCCC-----CCCeEEecCHHHHHHH
Q 013914 81 WYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRLTDFGVEGAD-----AKNIFYLREIDDADKL 154 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~-----~~~v~~~~~~~~~~~~ 154 (434)
...++|.+++.. .|..++...+-+.+ .+.+.+.+|.+|+|||+..+... +||.. ..++..+--++.+.-+
T Consensus 79 qs~r~Gt~i~tE-tVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~---~pg~ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIITE-TVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLH---LPGEGEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeeee-ehhhccccCCCeEEEecCCceeeeeEEEecccceeeee---cCCCCcchHHhcccchhhcccCcchh
Confidence 556689999986 88888887764332 35567999999999999887766 45531 2233322222222111
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|..+|||+|.+++|-|..|...+.+|++++|.+.+-.. . .+.++..+.-+|++++++.+.+...+
T Consensus 155 ------frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs---~---~Mq~ra~~npnI~v~~nt~~~ea~gd 222 (322)
T KOG0404|consen 155 ------FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS---K---IMQQRAEKNPNIEVLYNTVAVEALGD 222 (322)
T ss_pred ------hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH---H---HHHHHHhcCCCeEEEechhhhhhccC
Confidence 25789999999999999999999999999999999877541 1 22334456678999999988877662
Q ss_pred CCCcEEEE-----EeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeC-CCCCCCCCcEEEeccccccc
Q 013914 235 ADGEVKEV-----KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 235 ~~g~v~~v-----~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd-~~~~t~~~~iya~GD~~~~~ 302 (434)
.+.+..+ .+.+-+.++.+-++.++|..|++.+++..+++ ++|+|.+- ..-.||+|++||+||+.+..
T Consensus 223 -~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 223 -GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred -cccccceEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHH
Confidence 2322233 33334579999999999999999999998888 78998887 46788999999999998754
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=230.21 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=192.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+||+||++|..|++.|++ |+++|+.+..+. ++. ..++.+... ........+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~---V~v~e~~~~~GG--------~l~----~gip~~~~~--~~~~~~~l~~~~~ 199 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHA---VTIFEAGPKLGG--------MMR----YGIPAYRLP--REVLDAEIQRILD 199 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCC--------eee----ecCCCccCC--HHHHHHHHHHHHH
Confidence 47899999999999999999999986 999999865321 111 112221110 0001122345667
Q ss_pred cCcEEEcCCee-EEEECCCCEEEccCCcEEEcceEEEecCCCcc-cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 85 KGIELILSTEI-VRADIASKTLLSATGLIFKYQILVIATGSTVL-RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 85 ~~v~~~~~~~v-~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
.|+++..+..+ ..+..+ . ....||++++|||+.+. ... +++.+..+++..-.+.. ..........
T Consensus 200 ~Gv~~~~~~~~~~~~~~~--~------~~~~~D~Vi~AtG~~~~~~~~---i~g~~~~gv~~~~~~l~--~~~~~~~~~~ 266 (564)
T PRK12771 200 LGVEVRLGVRVGEDITLE--Q------LEGEFDAVFVAIGAQLGKRLP---IPGEDAAGVLDAVDFLR--AVGEGEPPFL 266 (564)
T ss_pred CCCEEEeCCEECCcCCHH--H------HHhhCCEEEEeeCCCCCCcCC---CCCCccCCcEEHHHHHH--HhhccCCcCC
Confidence 88988887544 221110 0 11358999999998753 233 56665555554322211 1100001124
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
+++++|+|+|..+++.+..+.+.+ .+|+++.+.+.. ++. ...+ + +.+.+.||+++++..+.++..++++.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~~----~-~~a~~~GVki~~~~~~~~i~~~~~~~~- 339 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDEE----I-EEALREGVEINWLRTPVEIEGDENGAT- 339 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHHH----H-HHHHHcCCEEEecCCcEEEEcCCCCEE-
Confidence 789999999999999999999988 779998887542 222 2222 2 234568999999999999976444432
Q ss_pred EEE-----e----CCC---------cEEECCEEEEcccCccChhhhhc--cccccCCcEEeCC-CCCCCCCcEEEecccc
Q 013914 241 EVK-----L----KDG---------RTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD-FFKTSADDVYAVGDVA 299 (434)
Q Consensus 241 ~v~-----~----~~g---------~~~~~D~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~-~~~t~~~~iya~GD~~ 299 (434)
+++ . ++| .++++|.||+|+|..|++.++.. ++..++|+|.||+ +++|++|+|||+|||+
T Consensus 340 ~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~ 419 (564)
T PRK12771 340 GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMV 419 (564)
T ss_pred EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcC
Confidence 322 1 222 37999999999999999888763 4444678999998 7889999999999998
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
..+ .++..|+.+|+.||.+|...+.++
T Consensus 420 ~g~----------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 420 PGP----------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 644 567889999999999997766553
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=206.80 Aligned_cols=286 Identities=16% Similarity=0.174 Sum_probs=181.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCC-CccC-------------ccccC-------CCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YER-PALS-------------KAYLF-------PEGT 60 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~-~~~~-------------~~~~~-------~~~~ 60 (434)
..++|+|||||+|||+||++|++.|++ |+|+|+++..+ |.. +... ....+ +...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~---v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHT---VVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCe---EEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999987 99999987532 111 0000 00000 0000
Q ss_pred CCCCCccccc--------------CCCCCCCChhhHhhcCcE--EEcCCeeEEEECCCCE--EEccCC--c--EEEcceE
Q 013914 61 ARLPGFHVCV--------------GSGGERLLPEWYKEKGIE--LILSTEIVRADIASKT--LLSATG--L--IFKYQIL 118 (434)
Q Consensus 61 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~~--v~~~~~--~--~~~~d~l 118 (434)
..++++.... .......+.++.++.++. +.++++|+.+++..+. |.+.++ . +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 1111111110 000112233444556777 7888999999886654 443322 2 4679999
Q ss_pred EEecC--CCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 119 VIATG--STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 119 vlAtG--~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
|+||| +.|+.|+++++.... ..+++.+++.+... .++++|+|||+|.+|+|+|..|...+.+|+++.+.+
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~-G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWP-GKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCC-ceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 99999 678888854333222 23344444433322 268999999999999999999999999999999865
Q ss_pred ccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccccC
Q 013914 197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENK 276 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~ 276 (434)
.+.. . ..+.....++..+..|..+.. ++ .|.+.||+.+++|.||+|||++++.++++. .
T Consensus 238 ~~~~--~---------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~ 296 (461)
T PLN02172 238 ESDT--Y---------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----N 296 (461)
T ss_pred cccc--c---------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----c
Confidence 3321 0 011112234555666666643 44 488999999999999999999999988763 2
Q ss_pred CcEEeCCCC------CC---C-CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 277 GGIETDDFF------KT---S-ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 277 g~i~vd~~~------~t---~-~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
+.+.+|+.. ++ . .|+++.+|=.... .....+..|++.+|+-+.+.
T Consensus 297 ~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~ 351 (461)
T PLN02172 297 GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGR 351 (461)
T ss_pred cceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCC
Confidence 445555421 11 2 4899999954322 23445667888888887765
|
|
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=173.65 Aligned_cols=306 Identities=19% Similarity=0.256 Sum_probs=208.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++++|+|||||.+|+++|..+.++ +..++|.++|+.+.+.|+. ... +.......+.. .......+-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rk-l~~g~vgIvep~e~HyYQP-gfT---LvGgGl~~l~~---------srr~~a~li 103 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRK-LGSGSVGIVEPAEDHYYQP-GFT---LVGGGLKSLDS---------SRRKQASLI 103 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhh-cCCCceEEecchhhcccCc-ceE---Eeccchhhhhh---------ccCcccccc
Confidence 578999999999999999999886 3467799999998876652 110 00110011100 000011111
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC-CCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
..+..++. ..|.+++++.++|.+.+|++|.||++|||+|..-+.-.++|+ ++.+.+++.+..+..-+++..+.+...+
T Consensus 104 P~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk 182 (446)
T KOG3851|consen 104 PKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFK 182 (446)
T ss_pred cCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhcc
Confidence 22444444 378888999999999999999999999999987766554443 3356789999999999988888887655
Q ss_pred CCcEEE---------ECCCHHHHHHHHH-HHhCCC--eEEEE--ccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVV---------VGGGYIGLELSAA-LKINNI--DVSMV--YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~V---------iG~g~~~~e~a~~-l~~~g~--~v~lv--~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..+.+. .|+-.-.+-++.. +++.|. ++.++ ...+.+.. -+..++++++..+++.|++......
T Consensus 183 ~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~krnL 259 (446)
T KOG3851|consen 183 KGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKRNL 259 (446)
T ss_pred CCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHHHHhcceEeeeccce
Confidence 444432 3444444555544 455553 34444 33333322 3567889999999999999988888
Q ss_pred EEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCccChhhhhccccccCCcEEeCC-CCCC-CCCcEEEecccccccc
Q 013914 229 VGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-FFKT-SADDVYAVGDVATFPM 303 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-~~~t-~~~~iya~GD~~~~~~ 303 (434)
.++..++...+.. .+++ | .+++++++-+....++...+.++.+....|++.||+ ++|. .+||||++|||...|+
T Consensus 260 iEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pn 338 (446)
T KOG3851|consen 260 IEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPN 338 (446)
T ss_pred EEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCChhhhhcCcccCcccceecChhhhccccCCCceeeccccCCCc
Confidence 8887633221111 1222 4 468899999888888877777777666789999996 5777 8999999999999887
Q ss_pred cccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
. +..+.+..|..++-+|+..-.+|+
T Consensus 339 s--------KTaAAvaaq~~vv~~nl~~~m~g~ 363 (446)
T KOG3851|consen 339 S--------KTAAAVAAQSPVVDKNLTQVMQGK 363 (446)
T ss_pred h--------hhHHHHHhcCchhhhhHHHHhcCC
Confidence 6 556555677888888887655554
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=171.72 Aligned_cols=269 Identities=23% Similarity=0.302 Sum_probs=176.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
+.+|||||.||.+||..|+.+- +.++|+++..++..- ...-.....++....... ....+...+.
T Consensus 1 kfivvgggiagvscaeqla~~~-psa~illitass~vksvtn~~~i~~ylekfdv~e-------------q~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE-PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKE-------------QNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC-CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccc-------------cchhhhcccH
Confidence 3689999999999999999974 567899999986521 000000000000000000 0000000000
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
. +++. .|..++...+.+++.+|.++.|++|++|||++|.... ++ -.+.+...++.+.++.++.++. +.|.
T Consensus 67 ~-~~~~--~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~----E~-~n~~Iv~irDtDsaQllq~kl~--kaK~ 136 (334)
T KOG2755|consen 67 R-RFLN--DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV----EG-INPKIVGIRDTDSAQLLQCKLV--KAKI 136 (334)
T ss_pred H-HHHH--hhhhhccccceEEecCCceeeEEEEEEecCCCcceee----cC-CCceEEEEecCcHHHHHHHHHh--hcce
Confidence 0 1111 2556677889999999999999999999999997543 33 2367888889999999998887 5899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC------------cEEEcCC-------
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG------------IKIIKGT------- 226 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G------------V~~~~~~------- 226 (434)
|+|+|.|-+++|++.++. +.+|+|....+.+...++++.+...+...++..+ ++.+.++
T Consensus 137 VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~ 214 (334)
T KOG2755|consen 137 VLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP 214 (334)
T ss_pred EEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence 999999999999998875 5679999888888888788887776665552111 1011110
Q ss_pred -----------------------------eEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh-hccccc
Q 013914 227 -----------------------------VAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF-KGQVAE 274 (434)
Q Consensus 227 -----------------------------~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~-~~~~~~ 274 (434)
-+....+++.+.+.......| ..+.||.+++|+|..||.+++ ...+..
T Consensus 215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~ 294 (334)
T KOG2755|consen 215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQI 294 (334)
T ss_pred ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhh
Confidence 000000001111111111111 368899999999999999955 334455
Q ss_pred -cCCcEEeCCCCCCCCCcEEEecccccc
Q 013914 275 -NKGGIETDDFFKTSADDVYAVGDVATF 301 (434)
Q Consensus 275 -~~g~i~vd~~~~t~~~~iya~GD~~~~ 301 (434)
++|++.||+.|+|+.|++||+||+...
T Consensus 295 ~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 295 TEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred ccccCeeehhhccccccceeeecceecc
Confidence 889999999999999999999998763
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=184.62 Aligned_cols=288 Identities=21% Similarity=0.251 Sum_probs=198.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|.|||||||||++|..|++.|+. |+++|+.+... +++.. .+|.+... ........+.+++
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~---Vtv~e~~~~~G--------Gll~y----GIP~~kl~--k~i~d~~i~~l~~ 185 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHD---VTVFERVALDG--------GLLLY----GIPDFKLP--KDILDRRLELLER 185 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCe---EEEeCCcCCCc--------eeEEe----cCchhhcc--chHHHHHHHHHHH
Confidence 47899999999999999999999987 99999986532 11111 12222211 0112344567778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh---
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA--- 160 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~--- 160 (434)
.|++++.++++- +.++.+.- .-.||.+++|+|+. |+..+ ++|.+.++++...++....... .+..
T Consensus 186 ~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~---i~g~d~~gv~~A~dfL~~~~~~-~~~~~~~ 254 (457)
T COG0493 186 SGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLD---IPGEDAKGVAFALDFLTRLNKE-VLGDFAE 254 (457)
T ss_pred cCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCC---CCCcCCCcchHHHHHHHHHHHH-Hhccccc
Confidence 899999886542 11222111 23569999999975 55445 7888878887544333222211 1110
Q ss_pred ---C--CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 161 ---K--KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 161 ---~--~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
. .+++++|||+|.++++++....+.|. +|+.+.+...- -...++....+...+...++|+++.+.....++..
T Consensus 255 ~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~ 334 (457)
T COG0493 255 DRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIG 334 (457)
T ss_pred ccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEee
Confidence 0 23899999999999999999999997 67777532222 11112333455666778889999999988899988
Q ss_pred cCCCcEEEEEeCC-------------------Cc--EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCC-CC
Q 013914 234 NADGEVKEVKLKD-------------------GR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFF-KT 287 (434)
Q Consensus 234 ~~~g~v~~v~~~~-------------------g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~-~t 287 (434)
+++|++..+.+.. |+ .+++|+|+.|+|+.++.... ...+.. ..|.+.+|+.+ +|
T Consensus 335 ~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t 414 (457)
T COG0493 335 NEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT 414 (457)
T ss_pred cCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc
Confidence 7788887654311 22 57799999999988875432 113444 67999999998 99
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
+.|++||.||+.... ..+..|+.+|+.+|+.|-
T Consensus 415 s~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 415 SIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred cCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 999999999999863 567888999999998876
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=184.01 Aligned_cols=298 Identities=16% Similarity=0.250 Sum_probs=154.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CC--C-Cc-----cCcccc--CCCCCCCCCCcccccCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YE--R-PA-----LSKAYL--FPEGTARLPGFHVCVGSG 73 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~--~-~~-----~~~~~~--~~~~~~~~~~~~~~~~~~ 73 (434)
++|+|||||++||++|..|.+.|++ ++++|+++..+ |. . +. ..+.+. .+.....+++|.......
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~---~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLE---VTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-E---EEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CEEEEECccHHHHHHHHHHHHCCCC---CeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 6899999999999999999999987 99999998743 11 0 00 000000 001112222222211110
Q ss_pred -------CCCCChhhHhhcCc--EEEcCCeeEEEECCCC-------EEEccC-Cc--EEEcceEEEecCC--CcccccCC
Q 013914 74 -------GERLLPEWYKEKGI--ELILSTEIVRADIASK-------TLLSAT-GL--IFKYQILVIATGS--TVLRLTDF 132 (434)
Q Consensus 74 -------~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~-------~v~~~~-~~--~~~~d~lvlAtG~--~~~~~~~~ 132 (434)
....+..+.++.++ .+.++++|.++..... .|++.+ +. +-.+|++|+|||- .|+.|. .
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~-~ 157 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPE-P 157 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCCh-h
Confidence 11223344445555 5778889998875321 244433 32 4579999999994 577664 1
Q ss_pred CCCCCC--CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCccC------
Q 013914 133 GVEGAD--AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPRLF------ 203 (434)
Q Consensus 133 ~~~g~~--~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~-~~~~~------ 203 (434)
.++|.+ ...+++++++.+...+ ++|+|+|||+|.+|+++|..+.+...+|++..|...+ +++..
T Consensus 158 ~~~G~e~F~G~i~HS~~yr~~~~f-------~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 158 SFPGLEKFKGEIIHSKDYRDPEPF-------KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp --CTGGGHCSEEEEGGG--TGGGG-------TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhcCCeeEEccccCcChhhc-------CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 134432 2457777777665443 7899999999999999999999999999988876443 22211
Q ss_pred ----------------CHHHHHHH-HH--------------------------------HHHhcCcEEEcCCeEEEEEec
Q 013914 204 ----------------TADIAAFY-EG--------------------------------YYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 204 ----------------~~~~~~~~-~~--------------------------------~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+..+.+.+ .+ .+....|.+.. .|.++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~- 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTE- 307 (531)
T ss_dssp --------------------------------------------------------------------EE---EEEE-S-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc-
Confidence 11111111 00 11111122111 1222221
Q ss_pred CCCcEEEEEeCCCcEE-ECCEEEEcccCccChhhhhccccc-cCCcEEeCCCC---CCCCCcEEEecccccccccccCcc
Q 013914 235 ADGEVKEVKLKDGRTL-EADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFF---KTSADDVYAVGDVATFPMKLYREM 309 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~---~t~~~~iya~GD~~~~~~~~~~~~ 309 (434)
.++.+.||+++ ++|.||+|||++....+++..+.. .++.+..-.++ +..+|++..+|=+....
T Consensus 308 -----~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 308 -----NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp -----SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred -----cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 25778999875 699999999999888888654332 33322211221 11458899999653211
Q ss_pred eecccHHHHHHHHHHHHHHHhcc
Q 013914 310 RRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 310 ~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.....+..|++.+++-+.+.
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~ 395 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGR 395 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTS
T ss_pred ---cccccccccccccccccccc
Confidence 23456778999888887765
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=182.49 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=162.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--C--CCccCccccCCCCCCCCC---CcccccCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--E--RPALSKAYLFPEGTARLP---GFHVCVGSGGER 76 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 76 (434)
+.++|+|||+||||++||.+|++.|++ |+++|+.+..+. . .|......+.+.-....+ +-....+.. ..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~---Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-~R 457 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN---VTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-VR 457 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe---EEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc-cc
Confidence 357999999999999999999999987 999998753211 1 000000000000000000 000000000 01
Q ss_pred CCh------hhHhhc--CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCCCCCeEEecC
Q 013914 77 LLP------EWYKEK--GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGADAKNIFYLRE 147 (434)
Q Consensus 77 ~~~------~~~~~~--~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~~~~v~~~~~ 147 (434)
... ....+. ++.++.+.. . +..++.++-....||+++||||+ .|+.++ ++|.+..++++..+
T Consensus 458 ~~k~~l~~i~~il~~g~~v~~~~gv~-l-----G~dit~edl~~~gyDAV~IATGA~kpr~L~---IPGeda~GV~sA~D 528 (1028)
T PRK06567 458 WDKNNLDILRLILERNNNFKYYDGVA-L-----DFNITKEQAFDLGFDHIAFCIGAGQPKVLD---IENFEAKGVKTASD 528 (1028)
T ss_pred chHHHHHHHHHHHhcCCceEEECCeE-E-----CccCCHHHHhhcCCCEEEEeCCCCCCCCCC---CCCccCCCeEEHHH
Confidence 111 111222 355555533 1 12222222124679999999999 688777 68877788886554
Q ss_pred HHHHHHHHHHH-----Hh-CCCCcEEEECCCHHHHHHHHHHHh-------------------------------------
Q 013914 148 IDDADKLVEAI-----KA-KKNGKAVVVGGGYIGLELSAALKI------------------------------------- 184 (434)
Q Consensus 148 ~~~~~~~~~~l-----~~-~~~~~v~ViG~g~~~~e~a~~l~~------------------------------------- 184 (434)
+.......... .. ..+++|+|||||.+|+|+|.....
T Consensus 529 fL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g 608 (1028)
T PRK06567 529 FLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFK 608 (1028)
T ss_pred HHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhc
Confidence 32221111000 00 025799999999999999984332
Q ss_pred --------------CCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----
Q 013914 185 --------------NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK----- 245 (434)
Q Consensus 185 --------------~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~----- 245 (434)
.|. |+++.|...--..... .-...+ +...+.||+|+.+..+.++..+++|++.++++.
T Consensus 609 ~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~-~~~eEv-~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~ 685 (1028)
T PRK06567 609 EAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYK-LNHEEL-IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRH 685 (1028)
T ss_pred chhccchhhhhhccCCc-eEEEecCChhhCCCCC-CCHHHH-HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecc
Confidence 122 7887776432111110 001222 235667999999999999987667877766543
Q ss_pred ---------C-C---------------cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 246 ---------D-G---------------RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 246 ---------~-g---------------~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+ + .+++||.||+|+|..||+..... ++-..||+-.
T Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~--------------------~~s~~~d~~~ 745 (1028)
T PRK06567 686 CEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED--------------------KYSYFGDCNP 745 (1028)
T ss_pred cccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc--------------------ccccccCCCC
Confidence 1 1 36899999999999999876311 1123344433
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
... .++..|+.+|+.++.+|..
T Consensus 746 ~f~---------Gtvv~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 746 KYS---------GSVVKALASSKEGYDAINK 767 (1028)
T ss_pred ccc---------cHHHHHHHHHHhHHHHHHH
Confidence 322 4677788899999998843
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-21 Score=171.01 Aligned_cols=188 Identities=32% Similarity=0.450 Sum_probs=122.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
||||||||+||++||.+|++.+.+ |+++|+.+..++...++....+....... .. ..........+.+...+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~---v~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 72 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAK---VLIIEKSPGTPYNSGCIPSPLLVEIAPHR----HE-FLPARLFKLVDQLKNRG 72 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEESSSSHHHHHHSHHHHHHHHHHHHHH----HH-HHHHHHGHHHHHHHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCe---EEEEecccccccccccccccccccccccc----cc-cccccccccccccccce
Confidence 799999999999999999988876 99999886533332222221111100000 00 00000001122335678
Q ss_pred cEEEcCCeeEEEECCCCEE----------EccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHH
Q 013914 87 IELILSTEIVRADIASKTL----------LSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 156 (434)
+++..+..+.+++...+.+ ...++.++.||+||+|||+.|+.|+ ++|.+ ..+......+++.+.+
T Consensus 73 v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~---i~g~~--~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 73 VEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPN---IPGEE--VAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEES---STTTT--TECBTTSEEHHHHHHT
T ss_pred EEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceee---cCCCc--cccccccccccccccc
Confidence 9998878999999888842 2234568999999999999988887 56642 2222244455555555
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
.+. .+++++|||
T Consensus 148 ~~~--~~~~v~VvG------------------------------------------------------------------ 159 (201)
T PF07992_consen 148 LLE--SPKRVAVVG------------------------------------------------------------------ 159 (201)
T ss_dssp HSS--TTSEEEEES------------------------------------------------------------------
T ss_pred ccc--ccccccccc------------------------------------------------------------------
Confidence 444 245999999
Q ss_pred CcEEEEEeCCCcEEECCEEEEcccCccChhh-hhccccc-cCCcEEeCCCCCCCCCcEEEeccccccc
Q 013914 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISL-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 237 g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~ 302 (434)
...+ -..++.+ ++|++.||+++||+.|||||+|||++.+
T Consensus 160 ---------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ---------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp ---------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 2222 2345666 6899999999999999999999999865
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-17 Score=147.01 Aligned_cols=292 Identities=12% Similarity=0.156 Sum_probs=184.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCcc----------ccCCCCCCCC-------
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKA----------YLFPEGTARL------- 63 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~----------~~~~~~~~~~------- 63 (434)
||++.+|+|.||-||+-|+.|+.|.+.+. .+...+|+.+.+.|...++..+ +.....+...
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL 78 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYL 78 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHH
Confidence 78899999999999999999999998752 2389999998877765444211 1111111100
Q ss_pred ------CCccc----ccCCCCCCCChhhHhhcCcEEEcCCeeE---EEECCCCE---EEccCCcEEEcceEEEecCCCcc
Q 013914 64 ------PGFHV----CVGSGGERLLPEWYKEKGIELILSTEIV---RADIASKT---LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 64 ------~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~v~---~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
-.|.. .....++..+-.|....--.+..+.+|+ +++.+... +.+.++..++++.||+.+|.+|+
T Consensus 79 ~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~ 158 (436)
T COG3486 79 HEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPY 158 (436)
T ss_pred HHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcC
Confidence 00000 0000112233344444446677788888 44444332 55667778999999999999999
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccCCc--
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPR-- 201 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~~~-- 201 (434)
+|+. +.....+.+++...+. .+. ..+. ..++|.|||+|.+|.|+-..|... ..++.|+.|+..+.|-
T Consensus 159 IP~~--f~~l~~~~vfHss~~~--~~~-~~~~--~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~ 231 (436)
T COG3486 159 IPPC--FRSLIGERVFHSSEYL--ERH-PELL--QKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDY 231 (436)
T ss_pred CChH--HhCcCccceeehHHHH--Hhh-HHhh--cCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCcccc
Confidence 9986 4455456777654332 111 1121 344599999999999998887654 3468889998776542
Q ss_pred ------cCCHHHH------------------------------HHHHHHH-------HhcCcEEEcCCeEEEEEecCCCc
Q 013914 202 ------LFTADIA------------------------------AFYEGYY-------ANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 202 ------~~~~~~~------------------------------~~~~~~l-------~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|.++.. ..+.+.| .+..|.++.++.+..++...+|+
T Consensus 232 Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~ 311 (436)
T COG3486 232 SKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR 311 (436)
T ss_pred chhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce
Confidence 1222221 1111111 13468899999999999866665
Q ss_pred EEEEEeCC-----CcEEECCEEEEcccCccChh-hh---hccccc-cCCcEEeCCCCCCC-----CCcEEEeccccccc
Q 013914 239 VKEVKLKD-----GRTLEADIVVVGVGGRPLIS-LF---KGQVAE-NKGGIETDDFFKTS-----ADDVYAVGDVATFP 302 (434)
Q Consensus 239 v~~v~~~~-----g~~~~~D~vi~a~G~~p~~~-~~---~~~~~~-~~g~i~vd~~~~t~-----~~~iya~GD~~~~~ 302 (434)
..+.+.. ..+++.|.||+|||++.... ++ .+.+.. ++|...|++.++.. .-.||+.|-+....
T Consensus 312 -~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htH 389 (436)
T COG3486 312 -YRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTH 389 (436)
T ss_pred -EEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccc
Confidence 3444422 24788999999999874443 33 223344 67899999877651 23699999766543
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=160.72 Aligned_cols=248 Identities=16% Similarity=0.203 Sum_probs=135.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccc-cCCCCCCCC-----C-------CcccccC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAY-LFPEGTARL-----P-------GFHVCVG 71 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~-~~~~~~~~~-----~-------~~~~~~~ 71 (434)
.+|+|+||.||++|+.|..|.+.+ ..++..+|+.+.+.|...++..+. +.......+ | .|-...+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 589999999999999999999986 233999999988777654432111 111100110 0 0000000
Q ss_pred C--------------CCCCCChhhHh-hcCcEEEcCCeeEEEECCCC------EEEcc----CCcEEEcceEEEecCCCc
Q 013914 72 S--------------GGERLLPEWYK-EKGIELILSTEIVRADIASK------TLLSA----TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 72 ~--------------~~~~~~~~~~~-~~~v~~~~~~~v~~i~~~~~------~v~~~----~~~~~~~d~lvlAtG~~~ 126 (434)
. .++..+..|+. +..-.+..+.+|+.|.+... +|.+. ++.++.++.||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 00111222222 23444777889999987653 35442 346899999999999999
Q ss_pred ccccCCCCCCCC-CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCCc--
Q 013914 127 LRLTDFGVEGAD-AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPR-- 201 (434)
Q Consensus 127 ~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~~-- 201 (434)
..|+. +.... .+.+++..++.....- ....++|+|||+|.+|.|++..|.+.+. +|+++.|++.+.+.
T Consensus 160 ~iP~~--~~~~~~~~~v~Hss~~~~~~~~-----~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~ 232 (341)
T PF13434_consen 160 RIPEW--FQDLPGSPRVFHSSEYLSRIDQ-----SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDD 232 (341)
T ss_dssp ---GG--GGGGTT-TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB---
T ss_pred CCCcc--hhhcCCCCCEEEehHhhhcccc-----ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCcc
Confidence 98875 33333 3778877665443211 1257899999999999999999998874 89999998765431
Q ss_pred ------cCCHH-------------------------------HHHHHHHH------HHhcCcEEEcCCeEEEEEecCCCc
Q 013914 202 ------LFTAD-------------------------------IAAFYEGY------YANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 202 ------~~~~~-------------------------------~~~~~~~~------l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|+++ +.+.+.+. ..+..+.++.+++|+.++..++|.
T Consensus 233 s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~ 312 (341)
T PF13434_consen 233 SPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG 312 (341)
T ss_dssp -CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS
T ss_pred ccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE
Confidence 23332 22222111 123458899999999998866543
Q ss_pred EEEEEeCC---C--cEEECCEEEEcccCc
Q 013914 239 VKEVKLKD---G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 239 v~~v~~~~---g--~~~~~D~vi~a~G~~ 262 (434)
..+.+.+ + .++++|.||+|||++
T Consensus 313 -~~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 313 -VRLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEEETTT--EEEEEESEEEE---EE
T ss_pred -EEEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 3455543 2 468899999999974
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=150.63 Aligned_cols=177 Identities=23% Similarity=0.328 Sum_probs=102.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCccCccccCCC---CCCCCCCc---ccc-----------
Q 013914 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPE---GTARLPGF---HVC----------- 69 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~---~~~----------- 69 (434)
+|||||++||++|.+|.++|.++ |+|||+++..+ |........+..+. ..+.++.+ ...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~--v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDP--VVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCc--EEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 79999999999999999998754 99999996532 11000000011111 00111111 000
Q ss_pred -cCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCC--CcccccCCCCCC-CCCCCeE
Q 013914 70 -VGSGGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS--TVLRLTDFGVEG-ADAKNIF 143 (434)
Q Consensus 70 -~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g-~~~~~v~ 143 (434)
........+..+.++.++++..++.|.++..+.. .|++.+++++.+|+||+|||. .|+.|+ +++ ... ..+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~---~~g~~~~-~~~ 154 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPD---IPGSAFR-PII 154 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S----TTGGCS-EEE
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccc---ccccccc-ceE
Confidence 0000112344455667889999999999987765 577777778999999999995 677666 566 332 455
Q ss_pred EecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 144 ~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+.....+.. ...+++|+|||+|.+|++++..|.+.|.+|+++.|.+.+
T Consensus 155 h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 155 HSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp EGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred ehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 554443332 226899999999999999999999999999999998753
|
... |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-18 Score=170.03 Aligned_cols=286 Identities=22% Similarity=0.272 Sum_probs=170.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
-++|.|||+|||||+||-.|.+.|+. |+|+||.+..+ +++. ..+|....+.. ..+.-.+.+.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~---v~vyer~dr~g--------gll~----ygipnmkldk~--vv~rrv~ll~~ 1847 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHT---VTVYERSDRVG--------GLLM----YGIPNMKLDKF--VVQRRVDLLEQ 1847 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcE---EEEEEecCCcC--------ceee----ecCCccchhHH--HHHHHHHHHHh
Confidence 47999999999999999999999986 99999997632 1221 11222221100 01233456677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~---- 159 (434)
.|++|+.++++- +.+.+ |+-.-.+|.+|+|+|+. |+..| ++|.+.++++..-.+.... -+..+.
T Consensus 1848 egi~f~tn~eig------k~vs~-d~l~~~~daiv~a~gst~prdlp---v~grd~kgv~fame~l~~n-tk~lld~~~d 1916 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIG------KHVSL-DELKKENDAIVLATGSTTPRDLP---VPGRDLKGVHFAMEFLEKN-TKSLLDSVLD 1916 (2142)
T ss_pred hCceEEeecccc------ccccH-HHHhhccCeEEEEeCCCCCcCCC---CCCccccccHHHHHHHHHh-HHhhhccccc
Confidence 899999876542 22222 33345789999999974 77777 6888888876433322221 111111
Q ss_pred ----hCCCCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCcc---------CCc---cCCHHHH-HHHHHHHHhcCcE
Q 013914 160 ----AKKNGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWC---------MPR---LFTADIA-AFYEGYYANKGIK 221 (434)
Q Consensus 160 ----~~~~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~---------~~~---~~~~~~~-~~~~~~l~~~GV~ 221 (434)
..++|+|+|||||.+|.++...-.+.|++ |.-++--|.+ .|+ .|.-+.. +..+ +..|-+
T Consensus 1917 ~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~---~~~g~d 1993 (2142)
T KOG0399|consen 1917 GNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAK---EHYGSD 1993 (2142)
T ss_pred cceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHH---HHhCCC
Confidence 12689999999999999999888888854 3323222221 111 1100110 1111 111221
Q ss_pred EEcCCe-EEEEEecCCCcEEE------------------EEeCCC-cEEECCEEEEcccCccChhhhh--ccccc-cCCc
Q 013914 222 IIKGTV-AVGFTTNADGEVKE------------------VKLKDG-RTLEADIVVVGVGGRPLISLFK--GQVAE-NKGG 278 (434)
Q Consensus 222 ~~~~~~-v~~i~~~~~g~v~~------------------v~~~~g-~~~~~D~vi~a~G~~p~~~~~~--~~~~~-~~g~ 278 (434)
.+.-+- -+++..+++|.+.+ .+..+. +.++||+|++|.|+..+..... .++.. .++.
T Consensus 1994 pr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsn 2073 (2142)
T KOG0399|consen 1994 PRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSN 2073 (2142)
T ss_pred cceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCcccc
Confidence 111110 11222233333332 222222 4689999999999875544332 23444 3444
Q ss_pred EEe-CCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 279 IET-DDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 279 i~v-d~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|.. ++.+.|.++.|||+|||-.... ++.+|+++|+.+|+.+-.
T Consensus 2074 i~t~~~~y~t~v~~vfaagdcrrgqs----------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2074 ILTPKDSYSTDVAKVFAAGDCRRGQS----------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred ccCCCccccccccceeecccccCCce----------EEEEEehhhhHHHHHHHH
Confidence 443 4568889999999999998763 455678999999998764
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.3e-17 Score=156.65 Aligned_cols=187 Identities=18% Similarity=0.243 Sum_probs=120.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCcc-CccccCCCCCCCCCCcccc--cC----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPAL-SKAYLFPEGTARLPGFHVC--VG---- 71 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~--~~---- 71 (434)
|+++++||+|||||++||++|.+|+++|.++ ++++||++..+ |+..+. +-.+..+.....++.+.+. ..
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~--~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPD--FVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCc--EEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence 4567899999999999999999999999765 99999997532 221111 1111111112233333321 00
Q ss_pred CCCCCCChhhHhhcCcE--EEcCCeeEEEECCCC----EEEccCCcE--EEcceEEEecC--CCcccccCCCCCCCCC--
Q 013914 72 SGGERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSATGLI--FKYQILVIATG--STVLRLTDFGVEGADA-- 139 (434)
Q Consensus 72 ~~~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~~~~--~~~d~lvlAtG--~~~~~~~~~~~~g~~~-- 139 (434)
........++++++++. +...+.|..++.+.+ +|+++++.+ +.+|+||+||| +.|+.|+ ++|.+.
T Consensus 82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~---~~G~~~f~ 158 (443)
T COG2072 82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD---FAGLDEFK 158 (443)
T ss_pred ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCC---CCCccCCC
Confidence 00112334455555433 333444554555443 366666654 55999999999 4677777 455432
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
..+++..+..+.+.+ .+|+|+|||+|.+|++++..|.+.|.+|+++.|++...
T Consensus 159 g~~~HS~~~~~~~~~-------~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 159 GRILHSADWPNPEDL-------RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred ceEEchhcCCCcccc-------CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 335555555554443 79999999999999999999999999999999986543
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-16 Score=147.16 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=122.4
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHH-HHHH----hCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELS-AALK----INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a-~~l~----~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
...+.+.++......=+|++.+.+|+|.+ ..+. +.|.+|+++...+..++. .++.+.+.+.+++.|++++.+
T Consensus 203 ~~~l~~~l~~~~~~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g 279 (422)
T PRK05329 203 REALADALKPLAGDAEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPG 279 (422)
T ss_pred HHHHHHHHHHhcCCCCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeC
Confidence 34444555443334447888999999998 6665 479999999988888874 478899999999999999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh-----------hccc------------------cc
Q 013914 226 TVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF-----------KGQV------------------AE 274 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~-----------~~~~------------------~~ 274 (434)
++|.+++.. ++.+..+...+|+ .+++|.+|+|+|+.+...+. ...+ .+
T Consensus 280 ~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~ 358 (422)
T PRK05329 280 DEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPF 358 (422)
T ss_pred CEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCch
Confidence 999999863 4555555555553 58999999999976554331 0000 11
Q ss_pred cCCcEEeCCCCCC-------CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKT-------SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t-------~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..-+|.+|+++|. ..+|+||+|++.+.+++.... .....|+..|..|+++|...
T Consensus 359 ~~~GV~~d~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 359 LQFGVATDATLRPLDSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred hhcCceECCCcCcccCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence 2234667766664 589999999999988763221 11235667888888888754
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-15 Score=141.31 Aligned_cols=238 Identities=18% Similarity=0.233 Sum_probs=141.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC--------ccCccc--cCCCCCCCCCCccccc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP--------ALSKAY--LFPEGTARLPGFHVCV 70 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~--------~~~~~~--~~~~~~~~~~~~~~~~ 70 (434)
+..++|+|||||+|||++|+.|.+.|.+ ++++||.+..+ |..+ .+-+.+ -.+.....++.+.+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~---v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~ 80 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHE---VVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE 80 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCC---ceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence 4578999999999999999999999987 99999998742 1111 000000 0111122233332211
Q ss_pred C-C-------CCCCCChhhHhhcCc--EEEcCCeeEEEECCCC---EEEccCC----cEEEcceEEEecCCC--cccccC
Q 013914 71 G-S-------GGERLLPEWYKEKGI--ELILSTEIVRADIASK---TLLSATG----LIFKYQILVIATGST--VLRLTD 131 (434)
Q Consensus 71 ~-~-------~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~---~v~~~~~----~~~~~d~lvlAtG~~--~~~~~~ 131 (434)
. . .....+.++.+..++ .+.+++++..++...+ .|.+.+. ...-+|.|++|||-. |+.|..
T Consensus 81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence 1 0 011223344444554 5677777888887652 3444333 367899999999965 776664
Q ss_pred CCC--CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccCCccCCHHH
Q 013914 132 FGV--EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADI 207 (434)
Q Consensus 132 ~~~--~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~~~~~~~~~~ 207 (434)
++. +.. ...+++.++......+ ..++|+|||+|.+|+|++..+.+...+|++..+. ....+ .
T Consensus 161 ~g~~~~~f-~G~~iHS~~Yk~~e~f-------~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~----~-- 226 (448)
T KOG1399|consen 161 PGPGIESF-KGKIIHSHDYKSPEKF-------RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEP----P-- 226 (448)
T ss_pred CCCchhhc-CCcceehhhccCcccc-------cCceEEEECCCccHHHHHHHHHHhccCcceeeecccccccc----c--
Confidence 331 111 2345555554433332 6799999999999999999999988888877541 00000 0
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 270 (434)
..+ ..++..+.. ++.+.. ++ .+.+.++....+|.+|+|||+.=...+++.
T Consensus 227 -----~~~-~~~~~~~~~--i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 227 -----EIL-GENLWQVPS--IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred -----cee-ecceEEccc--cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 000 011222211 444432 33 344566677889999999998765555543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-14 Score=134.19 Aligned_cols=274 Identities=15% Similarity=0.158 Sum_probs=147.4
Q ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.++|+||||||||++||.+|. +.|.+ |+|+|+.+.+. +++....+...+.... ....+...+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~---VtlfEk~p~pg--------GLvR~GVaPdh~~~k~-----v~~~f~~~~~ 102 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVK---VDIFEKLPNPY--------GLIRYGVAPDHIHVKN-----TYKTFDPVFL 102 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCe---EEEEecCCCCc--------cEEEEeCCCCCccHHH-----HHHHHHHHHh
Confidence 468999999999999999865 45665 99999997632 1221111111111100 0011122233
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCC------CC-CCC----CCCeEEecCH----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFG------VE-GAD----AKNIFYLREI---- 148 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~------~~-g~~----~~~v~~~~~~---- 148 (434)
..++++..+..+ ...+..++= .-.||.+|+|+|+.+..++++. +. |.+ ..++|...++
T Consensus 103 ~~~v~f~gnv~V------G~Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WY 175 (506)
T PTZ00188 103 SPNYRFFGNVHV------GVDLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFY 175 (506)
T ss_pred hCCeEEEeeeEe------cCccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEee
Confidence 456666533221 111222111 2379999999999865444110 00 222 2355533322
Q ss_pred -HHH-----HHHHHHHHhC-CCCcEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCccCC
Q 013914 149 -DDA-----DKLVEAIKAK-KNGKAVVVGGGYIGLELSAALK--------------------INN-IDVSMVYPEPWCMP 200 (434)
Q Consensus 149 -~~~-----~~~~~~l~~~-~~~~v~ViG~g~~~~e~a~~l~--------------------~~g-~~v~lv~~~~~~~~ 200 (434)
.+. ......+... ..++++|||.|+.++++|..|. +.+ .+|+++.|....-.
T Consensus 176 Ng~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qa 255 (506)
T PTZ00188 176 NNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQS 255 (506)
T ss_pred cCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHh
Confidence 011 0111112111 3478999999999999998753 223 35777776532110
Q ss_pred cc-----------------C-CHH-----------------------HHHHHHHHHH----------hcCcEEEcCCeEE
Q 013914 201 RL-----------------F-TAD-----------------------IAAFYEGYYA----------NKGIKIIKGTVAV 229 (434)
Q Consensus 201 ~~-----------------~-~~~-----------------------~~~~~~~~l~----------~~GV~~~~~~~v~ 229 (434)
.+ + +.+ ..+.+.+..+ .+.+.+++...+.
T Consensus 256 aFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ 335 (506)
T PTZ00188 256 SFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIR 335 (506)
T ss_pred CCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCce
Confidence 00 0 000 1112222221 1346778888888
Q ss_pred EEEecCCCcEEEEEeC-----------CC--cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCC--CCCcEEE
Q 013914 230 GFTTNADGEVKEVKLK-----------DG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKT--SADDVYA 294 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~-----------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t--~~~~iya 294 (434)
+|.. .++++.++++. .| ++++||+|+-|+|++...- + ++.++ ..+. |...+. ..|++|+
T Consensus 336 ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd-~~~~-n~~grv~~~~~g~Y~ 409 (506)
T PTZ00188 336 QIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN-QSVQ-MFKEDIGQHKFAIFK 409 (506)
T ss_pred EEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc-ccCC-CCCCcccCCCCCcEE
Confidence 8875 34677777765 23 3689999999999875421 1 23333 1122 122222 3799999
Q ss_pred ecccccccccccC
Q 013914 295 VGDVATFPMKLYR 307 (434)
Q Consensus 295 ~GD~~~~~~~~~~ 307 (434)
+|-+..+|....+
T Consensus 410 ~GWiKrGP~GvIg 422 (506)
T PTZ00188 410 AGWFDKGPKGNIA 422 (506)
T ss_pred eeecCcCCCceec
Confidence 9999887765333
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=129.17 Aligned_cols=198 Identities=18% Similarity=0.320 Sum_probs=112.4
Q ss_pred EEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHHHHHHHH--------HHH---hCCCCcEEEE---CCCH---
Q 013914 112 IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVE--------AIK---AKKNGKAVVV---GGGY--- 173 (434)
Q Consensus 112 ~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~--------~l~---~~~~~~v~Vi---G~g~--- 173 (434)
++....+|+|||-.++.+..+.--|. ..++|++.- +++++.. .++ ..++++|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~l---ElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNL---ELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhHH---HHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 57888999999988765432100011 124444322 2222221 111 1257888774 5432
Q ss_pred -----------HHHHHHHHHHhC--CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 174 -----------IGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 174 -----------~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
.++.-|....+. ..+|++..-.-+- +....-++..+.-++.||+|+.+. +.+|...+++. .
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRa----fG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~-l 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRA----FGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKK-L 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeec----cCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCe-e
Confidence 112222333332 3566666543222 344445555555558899999885 66776656665 2
Q ss_pred EEEeCC---C--cEEECCEEEEcccCccChhh--hh--ccccc-cCCcEEeC-CCCC---CCCCcEEEeccccccccccc
Q 013914 241 EVKLKD---G--RTLEADIVVVGVGGRPLISL--FK--GQVAE-NKGGIETD-DFFK---TSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 241 ~v~~~~---g--~~~~~D~vi~a~G~~p~~~~--~~--~~~~~-~~g~i~vd-~~~~---t~~~~iya~GD~~~~~~~~~ 306 (434)
.|...| | .++++|+|++++|..|.... +. .++.. ++|++... +.++ |+.++||.+|-|.++
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP----- 523 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP----- 523 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC-----
Confidence 344333 3 47899999999999885432 21 25555 57777655 5554 588999999977765
Q ss_pred CcceecccHHHHHHHHHHHHHHH
Q 013914 307 REMRRVEHVDHARKSAEQAVKTI 329 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i 329 (434)
..+..++.||..||...
T Consensus 524 ------kdI~~siaqa~aAA~kA 540 (622)
T COG1148 524 ------KDIADSIAQAKAAAAKA 540 (622)
T ss_pred ------ccHHHHHHHhHHHHHHH
Confidence 34555566666555443
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=123.11 Aligned_cols=290 Identities=17% Similarity=0.215 Sum_probs=161.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|.|||+||||+.+|..|.++ .+.+.|.|+|+.+. ||. +....-.+..|.... ....+...+++
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~-~~~~~Vdi~Ek~Pv-PFG-------LvRyGVAPDHpEvKn-----vintFt~~aE~ 85 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKR-HPNAHVDIFEKLPV-PFG-------LVRYGVAPDHPEVKN-----VINTFTKTAEH 85 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhc-CCCCeeEeeecCCc-ccc-------eeeeccCCCCcchhh-----HHHHHHHHhhc
Confidence 46999999999999999999986 34567999999975 222 111111122222111 01233444455
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK---- 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~---- 159 (434)
....++-+..+ .+.+.+.. -+-.||.+|||.|+. ++... |||.+..+|++.+.+ ..+.+-+.
T Consensus 86 ~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~---IPGe~l~~V~Saref---v~Wyng~P~~~~ 152 (468)
T KOG1800|consen 86 ERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLD---IPGEELSGVISAREF---VGWYNGLPENQN 152 (468)
T ss_pred cceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccC---CCCcccccceehhhh---hhhccCCCcccc
Confidence 55555554332 11121111 134699999999985 55555 799888888866543 33333111
Q ss_pred ---hCCCCcEEEECCCHHHHHHHHHHHhC----------------------CCeEEEEccCCccCCcc------------
Q 013914 160 ---AKKNGKAVVVGGGYIGLELSAALKIN----------------------NIDVSMVYPEPWCMPRL------------ 202 (434)
Q Consensus 160 ---~~~~~~v~ViG~g~~~~e~a~~l~~~----------------------g~~v~lv~~~~~~~~~~------------ 202 (434)
......++|||.|..++++|..|... =.+|+++.|...+...+
T Consensus 153 le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~ 232 (468)
T KOG1800|consen 153 LEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELP 232 (468)
T ss_pred cCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCC
Confidence 12467999999999999999887532 13577776653221000
Q ss_pred ---------------C----------CHHHHHHHHHHHHhc---------CcE---EEcCCeEEEEEecCCC----cEE-
Q 013914 203 ---------------F----------TADIAAFYEGYYANK---------GIK---IIKGTVAVGFTTNADG----EVK- 240 (434)
Q Consensus 203 ---------------~----------~~~~~~~~~~~l~~~---------GV~---~~~~~~v~~i~~~~~g----~v~- 240 (434)
+ .+++.+.+.+.+.++ +.+ +.+.....+|..+.++ +..
T Consensus 233 ~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v~~~~~~~ 312 (468)
T KOG1800|consen 233 GARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGVSGVRFQV 312 (468)
T ss_pred CcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccccceEEEe
Confidence 0 112333333333331 111 1111122233332122 000
Q ss_pred -------EEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCC----CCcEEEecccccccccccCc
Q 013914 241 -------EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTS----ADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 241 -------~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~----~~~iya~GD~~~~~~~~~~~ 308 (434)
.+.+.+-++++|++++.++|++... ++.++.+ ++.++.-|...+.. .|++|++|-|..+|.
T Consensus 313 t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~----- 385 (468)
T KOG1800|consen 313 TILEGTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPT----- 385 (468)
T ss_pred eeehhhcccccCceEeeccceeEeeeeecccc--cCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCc-----
Confidence 1111122478999999999975322 2335555 33445555554442 599999999988765
Q ss_pred ceecccHHHHHHHHHHHHHHHhcc
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..++.+++++..++..|...
T Consensus 386 ----GvIattm~dAf~v~d~I~qD 405 (468)
T KOG1800|consen 386 ----GVIATTMQDAFEVADTIVQD 405 (468)
T ss_pred ----ceeeehhhhHHHHHHHHHHH
Confidence 34555666777777777654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=99.76 Aligned_cols=80 Identities=34% Similarity=0.620 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+++|||+|++|+|+|..|.+.|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 589999999999999999999999999999999995 489999999999999999999999999999986667 65 888
Q ss_pred CCC
Q 013914 245 KDG 247 (434)
Q Consensus 245 ~~g 247 (434)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=117.90 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=61.6
Q ss_pred HHHHhCCCeEEEEccCCccCCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 180 AALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 180 ~~l~~~g~~v~lv~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
..+.+.|.+.+.-+ ..+..|. .-..++.+.+...+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+|
T Consensus 86 ~~~e~~Gi~~~e~~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lilA 162 (408)
T COG2081 86 DWVEGLGIALKEED-LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLILA 162 (408)
T ss_pred HHHHhcCCeeEEcc-CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEEe
Confidence 44455666544433 3344443 3356889999999999999999999999999833 447889999989999999999
Q ss_pred cc--Ccc
Q 013914 259 VG--GRP 263 (434)
Q Consensus 259 ~G--~~p 263 (434)
+| ..|
T Consensus 163 tGG~S~P 169 (408)
T COG2081 163 TGGKSWP 169 (408)
T ss_pred cCCcCCC
Confidence 99 555
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.9e-10 Score=107.12 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=87.9
Q ss_pred CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---------
Q 013914 200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF--------- 268 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~--------- 268 (434)
|......+.+.+.+.+++.|++++.+++|.++.. +++++..+.+.++ .++.+|.+|+|+|.--...++
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Ep 336 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEP 336 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeee
Confidence 3445667888899999999999999999999886 3566667776776 479999999999954111111
Q ss_pred --hcccc------------------ccCCcEEeCCCCCC-----CCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 269 --KGQVA------------------ENKGGIETDDFFKT-----SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 269 --~~~~~------------------~~~g~i~vd~~~~t-----~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
+..+. .-.-+|.+|+++|. ..+|+||+|-+.++++++.... -...|+..|.
T Consensus 337 if~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gc----G~GVai~Ta~ 412 (419)
T TIGR03378 337 IFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC----GSGVAVSTAL 412 (419)
T ss_pred ccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCC----CchhHHHHHH
Confidence 11110 01246889999984 3899999999999887633221 1235666778
Q ss_pred HHHHHH
Q 013914 324 QAVKTI 329 (434)
Q Consensus 324 ~aa~~i 329 (434)
.|+++|
T Consensus 413 ~aa~~i 418 (419)
T TIGR03378 413 HAAEQI 418 (419)
T ss_pred HHHHhh
Confidence 888776
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=101.86 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=99.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCCCccCccccCCCC--CCCCCC----cc-cccC---
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA----PYERPALSKAYLFPEG--TARLPG----FH-VCVG--- 71 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~----~~~~~~~~~~~~~~~~--~~~~~~----~~-~~~~--- 71 (434)
++|+|||+|++|+.+|.+|.+.-.....|.|+|+.+.. +|........+-.+.. ....|. |. +..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999999975444459999998763 3332111000000000 000011 00 0000
Q ss_pred ---------CCCC-------------CCChhhHhhcC---cEEEcCCeeEEEECCC----CEEEccCCcEEEcceEEEec
Q 013914 72 ---------SGGE-------------RLLPEWYKEKG---IELILSTEIVRADIAS----KTLLSATGLIFKYQILVIAT 122 (434)
Q Consensus 72 ---------~~~~-------------~~~~~~~~~~~---v~~~~~~~v~~i~~~~----~~v~~~~~~~~~~d~lvlAt 122 (434)
.... ..+..++++.. +.++.. +++.+.+.. ..+...+|....+|-+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~-~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIRE-EATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEee-eeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 0000 00111112222 455553 555554442 23566778888999999999
Q ss_pred CCCcccccC--CCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCC
Q 013914 123 GSTVLRLTD--FGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEP 196 (434)
Q Consensus 123 G~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~ 196 (434)
|..+..++. ..+++. +..+ .+...+..+ ..+. ...+|+|+|+|.+.++....|.+.|. ++|.+.|..
T Consensus 161 gh~~~~~~~~~~~~~~~--~~~i--a~~~~~~~l-d~v~--~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 161 GHSAPPADPAARDLKGS--PRLI--ADPYPANAL-DGVD--ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred cCCCCCcchhhhccCCC--ccee--ccccCCccc-cccc--CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 976543332 111221 1111 111111111 1111 24569999999999999999999874 688888764
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.9e-11 Score=112.83 Aligned_cols=224 Identities=17% Similarity=0.113 Sum_probs=112.1
Q ss_pred cCcEEEcCCeeEEEECCCC-E---EEcc-C-C--cEEEcceEEEecCCCcccccCC-CCCCCCCCCe-------EEecCH
Q 013914 85 KGIELILSTEIVRADIASK-T---LLSA-T-G--LIFKYQILVIATGSTVLRLTDF-GVEGADAKNI-------FYLREI 148 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~---v~~~-~-~--~~~~~d~lvlAtG~~~~~~~~~-~~~g~~~~~v-------~~~~~~ 148 (434)
.+|+++.+..+.++-.+++ . +.+. . + ..+.++.+|||||.--...... +-.+....++ ..+.++
T Consensus 147 p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl 226 (518)
T COG0029 147 PNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL 226 (518)
T ss_pred CCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc
Confidence 5899999988877776666 2 2232 2 2 4678999999999753222110 0011100000 001111
Q ss_pred HHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CCH-HHHHHHHHHHHhcCcE
Q 013914 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTA-DIAAFYEGYYANKGIK 221 (434)
Q Consensus 149 ~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~~-~~~~~~~~~l~~~GV~ 221 (434)
+-.|. ...+....+--..-+.+.++-.|.. .+-..+.+|++.+ -+. -+++.+...+++.|-+
T Consensus 227 EFvQF----------HPT~l~~~~~~~~LiSEAVRGEGA~-L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~ 295 (518)
T COG0029 227 EFVQF----------HPTALYIPQRRAFLISEAVRGEGAI-LVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGAD 295 (518)
T ss_pred cceee----------ccceecCCCCccceeehhhhcCccE-EECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCe
Confidence 10000 0111111111111122333333322 1223445565431 122 3566778888887776
Q ss_pred EEcCCeEEEEEecCCCcEEEEEeCCCcEEEC-CEEEEcccCccChhhhhcccc--ccCCcEEeCCCCCCCCCcEEEeccc
Q 013914 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEA-DIVVVGVGGRPLISLFKGQVA--ENKGGIETDDFFKTSADDVYAVGDV 298 (434)
Q Consensus 222 ~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~-D~vi~a~G~~p~~~~~~~~~~--~~~g~i~vd~~~~t~~~~iya~GD~ 298 (434)
++++.+ .+.. .. + + ++++. ...+...|..|.-+.++.-.. ..-|+|.||.+.||+.|++||+|.|
T Consensus 296 V~LD~s--~~~~---~~---~--~--~rFP~I~~~c~~~GiD~~r~~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEv 363 (518)
T COG0029 296 VFLDIS--HIPG---DF---F--E--RRFPTIYAACLKAGIDPTREPIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEV 363 (518)
T ss_pred EEEecc--CCCc---hh---h--h--hhCcHHHHHHHHcCCCcccCccCccchhheecccEEECCCCcccCcccEEeeee
Confidence 665532 1111 00 0 0 12221 122334565555444432211 2569999999999999999999999
Q ss_pred ccccccccCccee-cccHHHHHHHHHHHHHHHhccC
Q 013914 299 ATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 299 ~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+..- ..|..+. ..+...+.--|+.+|++|.+..
T Consensus 364 A~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 364 ACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred cccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 8642 2333322 1345566677888888888764
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.7e-11 Score=112.54 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCcc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 177 ELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~lv~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
++...+.+.|.... .....++.|.. -..++.+.+.+.+++.||+++++++|.++.. +++....|.++++.++.+|.|
T Consensus 81 d~~~ff~~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 81 DLIAFFEELGVPTK-IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHTT--EE-E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHhcCCeEE-EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEE
Confidence 44456677776644 34455655532 2356778889999999999999999999987 345556788877789999999
Q ss_pred EEcccCcc
Q 013914 256 VVGVGGRP 263 (434)
Q Consensus 256 i~a~G~~p 263 (434)
|+|+|-..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-09 Score=102.89 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~-~~~D~vi~a~G~~p 263 (434)
..++...+.+.+.++|++++++++|..|+..++| +..+.+.+|++ ++|+.||.|.|.-.
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhH
Confidence 3456778888888899999999999999985565 56788888876 99999999999654
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=97.30 Aligned_cols=128 Identities=21% Similarity=0.239 Sum_probs=86.8
Q ss_pred CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccCccChh-----------
Q 013914 200 PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGGRPLIS----------- 266 (434)
Q Consensus 200 ~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~--~~~D~vi~a~G~~p~~~----------- 266 (434)
|..+.-.+.+.+.+.+++.|.-+..+.+|.+.+. .++++..+.+.++.. +.+|..|+|+|.--..-
T Consensus 253 PSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EP 331 (421)
T COG3075 253 PSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEP 331 (421)
T ss_pred cchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcc
Confidence 3334556788889999999999999999999987 678889999988764 56899999999411110
Q ss_pred hhhccc------------------cccCCcEEeCCCCCCC-----CCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 267 LFKGQV------------------AENKGGIETDDFFKTS-----ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 267 ~~~~~~------------------~~~~g~i~vd~~~~t~-----~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
++...+ ....-++.+|+++|.+ ..|+||+|.+.+.++++....- ...|+..|.
T Consensus 332 If~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcG----sGVaivta~ 407 (421)
T COG3075 332 IFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCG----SGVAIVTAL 407 (421)
T ss_pred hhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCC----cchHHHHHH
Confidence 010000 0122458889888863 6799999999998876432211 123444566
Q ss_pred HHHHHHhcc
Q 013914 324 QAVKTIMAT 332 (434)
Q Consensus 324 ~aa~~i~~~ 332 (434)
.|++.|+..
T Consensus 408 ~aa~qi~~~ 416 (421)
T COG3075 408 HAAEQIAER 416 (421)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-10 Score=110.60 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=40.2
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. .....+.-.|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~---hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGF---HGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCC---CCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999974 22 2222211 3456677788888888865
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=108.27 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.+. ..+|+|+||...
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 4899999999999999999998731 223999999875
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=109.28 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~---VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRR---VLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCe---EEEEEccCC
Confidence 58999999999999999999998876 999999875
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1e-09 Score=110.73 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++. |.+ |+||||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~---V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLK---VLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECCCc
Confidence 47999999999999999999998 776 999999864
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-08 Score=96.96 Aligned_cols=119 Identities=14% Similarity=0.239 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCc-cc--c--CCCCCCCCCCcccc--------c
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSK-AY--L--FPEGTARLPGFHVC--------V 70 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~-~~--~--~~~~~~~~~~~~~~--------~ 70 (434)
.+||+||||||||+++|..|++.|++ |+|+|+.+...+.+.. ... .+ + ........+..... .
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~---V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLS---VCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 58999999999999999999999987 9999998654332211 000 00 0 00000000000000 0
Q ss_pred CCC----CC----CCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcc
Q 013914 71 GSG----GE----RLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 71 ~~~----~~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
... .. ..+.+.+.+.|++++. ..|.++..... .|.+.+|.++++|.+|.|+|....
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 00 1111222346899875 48888876554 466778888999999999997654
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-10 Score=109.52 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=41.1
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCccee-cccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++||+||+|+|+. .. .|..+. -..+..+.-.|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTGL---HGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECcccccccc---CcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 56999999999999999999999974 22 222221 135577888899999988753
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.7e-09 Score=103.18 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=92.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCCCccCccccCCCCCCCC----CCcccc--------
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YERPALSKAYLFPEGTARL----PGFHVC-------- 69 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~-------- 69 (434)
++|+|||||++|+++|..|.+.+. ..+|+|||++...+ |.....+..++........ +.|...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 589999999999999999998653 45699999976432 2221111111111000000 000000
Q ss_pred ---c-------CC-CC--CCCC----hh-------hHhhcC--cEEEcCCeeEEEECCCCE--EEccC-CcEEEcceEEE
Q 013914 70 ---V-------GS-GG--ERLL----PE-------WYKEKG--IELILSTEIVRADIASKT--LLSAT-GLIFKYQILVI 120 (434)
Q Consensus 70 ---~-------~~-~~--~~~~----~~-------~~~~~~--v~~~~~~~v~~i~~~~~~--v~~~~-~~~~~~d~lvl 120 (434)
. .. .. ...+ .+ .+...| +.++..++|+.+...... +.+.+ +..+.+|++|+
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVL 160 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI 160 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEE
Confidence 0 00 00 0011 11 112334 677777899999876654 34334 46789999999
Q ss_pred ecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC
Q 013914 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185 (434)
Q Consensus 121 AtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~ 185 (434)
|||..+..+. ++. ...+ .+..+.. + +....+.+|+|+|.|.++++.+..|...
T Consensus 161 AtGh~~p~~~----~~~--~~yi--~~pw~~~-~---~~~i~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 161 ATGHVWPDEE----EAT--RTYF--PSPWSGL-M---EAKVDACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred CCCCCCCCCC----hhh--cccc--CCCCcch-h---hcCCCCCeEEEECCCHHHHHHHHHHHhc
Confidence 9997542111 111 1111 1111111 1 1111368999999999999999888755
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-10 Score=112.99 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=78.9
Q ss_pred CCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEccCCccCCcc-------------CCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGY--IGLELSAALKINNIDVSMVYPEPWCMPRL-------------FTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~--~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-------------~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
.+.++.|+|+++ ++.+++..+...+.+++++.+.+++++.. ....+...+.+.+++.|++++.++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~ 235 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGT 235 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCC
Confidence 467888999988 89999999999998888776655544321 124577778888899999999999
Q ss_pred eEEEEEecCCCcEEEEEeCC--Cc-EEECC-EEEEcccCcc-Chhhh
Q 013914 227 VAVGFTTNADGEVKEVKLKD--GR-TLEAD-IVVVGVGGRP-LISLF 268 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~--g~-~~~~D-~vi~a~G~~p-~~~~~ 268 (434)
.++++.. +++++.++...+ ++ ++.++ .||+|+|.-+ |.+++
T Consensus 236 ~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~ 281 (574)
T PRK12842 236 PARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHDLARI 281 (574)
T ss_pred EEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHHH
Confidence 9999986 367777776643 32 46786 7999999655 44443
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=109.69 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=78.6
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 162 KNGKAVVVGGGYIGLELSAA-------LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~-------l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
.++.++++|++.++++++.. +.+.+.+|+++...+..... +...+...+.+.+++.|+++++++++.++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 36678899999999998865 56667777765544333332 5777888889999999999999999999987
Q ss_pred CCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 235 ADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 235 ~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
+++++.++... +++ .+.++ .||+|+| +.+|.+++.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~ 276 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRA 276 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHH
Confidence 45777776653 443 47785 5888777 777777664
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-09 Score=110.60 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||.++++.|.+ |+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~---V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGAN---VLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCe---EEEEecccc
Confidence 58999999999999999999998887 999999864
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=105.50 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=40.9
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||.+.||++|++||+|+|+... ..|..+.. .++..+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999997521 12222211 35677778889999988654
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.7e-09 Score=105.22 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|.+..+||||||+|.||++||..+++.|.+ |+|+||...
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~---V~lveK~~~ 39 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFK---VAVISKVFP 39 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 444568999999999999999999998887 999999854
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-08 Score=95.59 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|.++... ++. ..+.+.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCC-EEEeCEEEECCCcch
Confidence 4678888889999999999999999999863 333 35777777 799999999999754
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=102.50 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcC---CCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQG---VKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g---~~~~~V~vie~~~~ 42 (434)
|+...+||+|||+|.||++||..+++.| .+ |+|+||...
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~---V~lleK~~~ 42 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLS---VAVVSKTQP 42 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCc---EEEEEcccC
Confidence 6666799999999999999999999987 55 999999864
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-08 Score=98.58 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=41.2
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. ..+..+.-.|+.|++++...
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~---hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGL---HGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred ecCCeeECCCCccccCCEEeccccccccc---CCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999974 22 2222211 45667778899999988654
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.4e-09 Score=101.47 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=74.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC---ccC----ccccCC---CCC-CCC---CC-
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP---ALS----KAYLFP---EGT-ARL---PG- 65 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~---~~~----~~~~~~---~~~-~~~---~~- 65 (434)
|++.++||+||||||||++||+.|+++|++ |+||||.+......+ .++ ..++.. ..+ ... ..
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~---V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQ---VLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCe---EEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeE
Confidence 666679999999999999999999999997 999999875432111 000 000000 000 000 00
Q ss_pred ----------cccccC---C---CCC--------CCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEE
Q 013914 66 ----------FHVCVG---S---GGE--------RLLPEWYKEKGIELILSTEIVRADIASKTL--LSATGLIFKYQILV 119 (434)
Q Consensus 66 ----------~~~~~~---~---~~~--------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lv 119 (434)
+.+... . ... ..+.+..++.|++++.++.|+.+..+...+ ...++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEE
Confidence 000000 0 000 011222345799999999999887554432 23456689999999
Q ss_pred EecCCCccc
Q 013914 120 IATGSTVLR 128 (434)
Q Consensus 120 lAtG~~~~~ 128 (434)
.|+|.....
T Consensus 158 ~A~G~~s~l 166 (428)
T PRK10157 158 LADGVNSIL 166 (428)
T ss_pred EEeCCCHHH
Confidence 999976543
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-08 Score=94.22 Aligned_cols=116 Identities=18% Similarity=0.236 Sum_probs=67.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCcccc-----CCCCCCCCCC-cccc-------cCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYL-----FPEGTARLPG-FHVC-------VGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~-~~~~-------~~~ 72 (434)
||+|||||+||+++|..|++.|++ |+|||+++..+..... .....+ .........+ +... ...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~---v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLR---VQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCe---EEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 799999999999999999998887 9999998654322110 000000 0000000011 0000 000
Q ss_pred C--------CCCCChhhHhhcCcEEEcCCeeEEEECC-CC--EEEccCCcEEEcceEEEecCCCc
Q 013914 73 G--------GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 73 ~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
. ....+.+.+.+.+++++.+ .+..+..+ .. .+.+.++.+++++.+|.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~~-~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLER-KAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEcc-EEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 0011222234568888754 77777655 22 35666777899999999999776
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=99.83 Aligned_cols=124 Identities=18% Similarity=0.275 Sum_probs=74.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cCcc---ccCCCC-----CCC-CCC---
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKA---YLFPEG-----TAR-LPG--- 65 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~---~~~~~~-----~~~-~~~--- 65 (434)
|++.++||+||||||||++||+.|++.|++ |+|||+.+......++ ++.. .+.+.. ... ...
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~---VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLD---VLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeE
Confidence 666679999999999999999999999987 9999998764322110 0000 000000 000 000
Q ss_pred --------cccccCC--------CCC----CC----ChhhHhhcCcEEEcCCeeEEEECCCCEEE--ccCCcEEEcceEE
Q 013914 66 --------FHVCVGS--------GGE----RL----LPEWYKEKGIELILSTEIVRADIASKTLL--SATGLIFKYQILV 119 (434)
Q Consensus 66 --------~~~~~~~--------~~~----~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v~--~~~~~~~~~d~lv 119 (434)
....... ... .. +.+..++.|++++.++.|+.+..++..+. ..++.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEE
Confidence 0000000 000 01 22233457999999989998876544432 2344579999999
Q ss_pred EecCCCcc
Q 013914 120 IATGSTVL 127 (434)
Q Consensus 120 lAtG~~~~ 127 (434)
+|+|....
T Consensus 158 ~AdG~~s~ 165 (429)
T PRK10015 158 LADGVNSM 165 (429)
T ss_pred EccCcchh
Confidence 99997543
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=96.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++.|++++.+++++++..++++ ..+++++|+++.+|.||.|.|..+..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADR--VRLRLDDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe--EEEEECCCCEEEeCEEEEecCCCchH
Confidence 456677778888899999999999999873333 45778888899999999999987754
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-08 Score=95.27 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+.+|.+.+|+ +.+|.||+|+|...
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccc
Confidence 577888999999999999999999999997 45666679999996 99999999999654
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=7e-09 Score=99.39 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=75.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cC---------ccc----------------
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAY---------------- 54 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~---------------- 54 (434)
|.+++||+|||||++|+++|..|++.|.+ |+|+|+.+........ +. -++
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIA---VDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDL 77 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEE
Confidence 44678999999999999999999999987 9999998642111000 00 000
Q ss_pred cCCCC--CCCCCCcccc---cCC-------CCCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEE
Q 013914 55 LFPEG--TARLPGFHVC---VGS-------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVI 120 (434)
Q Consensus 55 ~~~~~--~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvl 120 (434)
+.... ....+..... ... .....+.+.+.+.++++..++.+..++.+.. .+.+.++.++.+|.+|.
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 78 FDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred ECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEE
Confidence 00000 0000000000 000 0001122233456899999999999886554 35567788899999999
Q ss_pred ecCCCccc
Q 013914 121 ATGSTVLR 128 (434)
Q Consensus 121 AtG~~~~~ 128 (434)
|+|.....
T Consensus 158 AdG~~s~~ 165 (375)
T PRK06847 158 ADGLYSKV 165 (375)
T ss_pred CcCCCcch
Confidence 99986543
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=101.56 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=46.7
Q ss_pred ccCccChhhhhccc--cccCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 259 VGGRPLISLFKGQV--AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 259 ~G~~p~~~~~~~~~--~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
.|..|..+.++... ....|+|.||.++||++|++||+|+|+... ..|..+.. .....|.-.|+.|+++++..
T Consensus 339 ~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 339 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred cCCCCCCCeeeeeceeeeeCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 35555444333221 125799999999999999999999997521 12222211 34566777888888887654
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-09 Score=104.62 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=40.6
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+... ..|..+.. .+...+.-.|+.|++++...
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999997421 12222211 35667777888888887653
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=100.09 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=75.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc---cCcccc----CCCC---CCCCCCccc------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA---LSKAYL----FPEG---TARLPGFHV------ 68 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~---~~~~~~----~~~~---~~~~~~~~~------ 68 (434)
+|||+||||||||++||+.|++.|++ |+|+|+.+...+..++ ++...+ .... ...+.....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~---VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLD---VLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCe---EEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 69999999999999999999999977 9999998875544333 111111 0000 000000000
Q ss_pred -ccCCC---C----CCC----ChhhHhhcCcEEEcCCeeEEEECCCCEE--Ec-cCCcEEEcceEEEecCCCcccc
Q 013914 69 -CVGSG---G----ERL----LPEWYKEKGIELILSTEIVRADIASKTL--LS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 69 -~~~~~---~----~~~----~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~-~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+... . ... +.+..++.|++++.++.+..+..++..+ .. .++.+++++++|.|+|......
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~ 155 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA 155 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence 00000 0 011 2233445799999999999888666432 22 2335899999999999765433
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2e-08 Score=99.52 Aligned_cols=55 Identities=27% Similarity=0.242 Sum_probs=40.0
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+. .. .|..+.. .....+.-.|+.|++++...
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~---hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGL---HGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCC---CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999973 22 2222111 34566777888888887654
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-08 Score=102.47 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=40.8
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCccee-cccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|++... +..+. -.....|.-.|+.|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999975432 22111 134567778888888888754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-09 Score=105.57 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=40.4
Q ss_pred cCCcEEeCCCCC----CCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFK----TSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~----t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.||...| |++||+||+|+|+... ..|..+.. .....|.-.|+.|++++...
T Consensus 341 t~GGi~id~~~~v~~~t~I~GLyAaGe~a~~g--~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~ 401 (566)
T TIGR01812 341 SMGGIPTDYTGRVICETIVKGLFAAGECACVS--VHGANRLGGNSLLELVVFGRIAGEAAAEY 401 (566)
T ss_pred cCCCeEECcCcccccCcccCCeeecccccccC--cCcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999 9999999999998521 12222111 35567778888888887643
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.8e-09 Score=102.14 Aligned_cols=127 Identities=20% Similarity=0.217 Sum_probs=77.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-CCCCc-cC---------cccc--------------
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-YERPA-LS---------KAYL-------------- 55 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-~~~~~-~~---------~~~~-------------- 55 (434)
|.+..+||+||||||+|+++|..|+++|.+ |+|||+.+... ..+.. +. .+++
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~---V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~ 77 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLN---TVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSS 77 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCC---EEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEE
Confidence 666789999999999999999999999987 99999987521 11110 00 0000
Q ss_pred --CCC-CCC-------CCCC--c--ccccCCC-CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceE
Q 013914 56 --FPE-GTA-------RLPG--F--HVCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQIL 118 (434)
Q Consensus 56 --~~~-~~~-------~~~~--~--~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~l 118 (434)
... ... ..+. + ....... ....+.+.+.+.|+++..+++++.+..+... +.+.+++++++++|
T Consensus 78 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~v 157 (487)
T PRK07190 78 VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYV 157 (487)
T ss_pred EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEE
Confidence 000 000 0000 0 0000000 0011223345679999999999999766543 44566778999999
Q ss_pred EEecCCCccccc
Q 013914 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 vlAtG~~~~~~~ 130 (434)
|.|+|.......
T Consensus 158 VgADG~~S~vR~ 169 (487)
T PRK07190 158 IGADGSRSFVRN 169 (487)
T ss_pred EECCCCCHHHHH
Confidence 999998764333
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-09 Score=108.32 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|-...+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~---VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLD---TIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCC---EEEEeCCCC
Confidence 445579999999999999999999999987 999998754
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.1e-08 Score=90.96 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=80.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---c--------CCc----cCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
+++|||+|+.|+++|..|.+.|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ .+|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 1 121 12367888899999999999998 7899
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+++.. +....+.+.+++++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~~--~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLS--DRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEec--CCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 98873 333467777888999999999999987654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=102.33 Aligned_cols=54 Identities=26% Similarity=0.199 Sum_probs=38.4
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHh
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~ 330 (434)
..|+|.+|.+.||++|++||+|+|+..- ..|..+.. .+...+.-.|+.+++.+.
T Consensus 346 ~~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanRL~gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 346 WMGGVVTDLNNQTSIPGLYAVGETASTG--VHGANRLASNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred cCCCeeECCCCcccCCCEEECccccccC--CCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999997421 12222211 344566677888888774
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=99.83 Aligned_cols=55 Identities=27% Similarity=0.238 Sum_probs=40.3
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.||++||+||+|+|+... ..|..+.. .++..+.-.|+.|++++..
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998421 12222211 3567777788888888764
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=100.25 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFA----KQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~----~~g~~~~~V~vie~~~~ 42 (434)
||||||+|.|||+||..++ +.|.+ |+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~---VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLK---IVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCe---EEEEEccCC
Confidence 7999999999999999998 56776 999999864
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=100.33 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHH-HHHHHHHHhCCCeEEEEccCCccCCc-------------cCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIG-LELSAALKINNIDVSMVYPEPWCMPR-------------LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~-~e~a~~l~~~g~~v~lv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+.+.+.+.+++.|++++.++++
T Consensus 161 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v 240 (581)
T PRK06134 161 LRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPA 240 (581)
T ss_pred cccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEE
Confidence 4566678877665 67777766666555443332221110 124567788888899999999999999
Q ss_pred EEEEecCCCcEEEEEeC--CCc-EEEC-CEEEEcccC-ccChhh
Q 013914 229 VGFTTNADGEVKEVKLK--DGR-TLEA-DIVVVGVGG-RPLISL 267 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~--~g~-~~~~-D~vi~a~G~-~p~~~~ 267 (434)
+++.. +++++.+|... ++. ++.+ +.||+|+|- ..|.++
T Consensus 241 ~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 241 RELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred EEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 99876 36777666553 332 5788 999999984 444444
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=82.63 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---------------------------------
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------------------------- 201 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------------------------------- 201 (434)
.+.+.+.....|+|||+|+.|+-+|..+++.|.+|.++++.+.+...
T Consensus 17 ~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~ 96 (257)
T PRK04176 17 FEKLLDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED 96 (257)
T ss_pred HHHHHHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence 34444445578999999999999999999999999999987543210
Q ss_pred ----cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh
Q 013914 202 ----LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 202 ----~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.-..++...+.+..++.|++++.++.+.++...+++++.++... +..++.++.||.|+|......
T Consensus 97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~ 176 (257)
T PRK04176 97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVV 176 (257)
T ss_pred cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHH
Confidence 01224556677777889999999999999876445566666543 124789999999999544322
Q ss_pred -hh-hc----cccc-cCC--------cEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 267 -LF-KG----QVAE-NKG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 267 -~~-~~----~~~~-~~g--------~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.+ +. .... ... ...|+.+-+. +|++|++|=++.-.. |.++--+....=...|+.||+-++.
T Consensus 177 ~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~-~~g~~~~gm~~~~~~---~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 177 SVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV-YPGLYVAGMAANAVH---GLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred HHHHHHcCCcccccCCccccccCchHHHHHhcCCeE-cCCEEEeehhhhhhc---CCCccCchhHhHHHhHHHHHHHHHH
Confidence 22 11 0111 011 1222333333 899999997665322 1111112222233578888888876
Q ss_pred cC
Q 013914 332 TE 333 (434)
Q Consensus 332 ~~ 333 (434)
.+
T Consensus 253 ~~ 254 (257)
T PRK04176 253 KL 254 (257)
T ss_pred Hh
Confidence 54
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=98.55 Aligned_cols=125 Identities=26% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC--CC-ccCc-------------cccCCCCCCCCCCcc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE--RP-ALSK-------------AYLFPEGTARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~--~~-~~~~-------------~~~~~~~~~~~~~~~ 67 (434)
..+||+||||||+|+++|..|++.|.+ |+|||+.+..... +. .++. .+...........+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~---v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~ 78 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD---VAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA 78 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee
Confidence 468999999999999999999999987 9999998643211 11 1100 000000000000000
Q ss_pred ---cccC---C------C-----CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCccc
Q 013914 68 ---VCVG---S------G-----GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 68 ---~~~~---~------~-----~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.... . . ....+.+.+++.+++++.+++++.+..+... +.+.++.++++|++|.|.|.....
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 79 ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 0000 0 0 0011223345568999999999999876654 445567789999999999987655
Q ss_pred ccC
Q 013914 129 LTD 131 (434)
Q Consensus 129 ~~~ 131 (434)
...
T Consensus 159 R~~ 161 (488)
T PRK06834 159 RKA 161 (488)
T ss_pred Hhh
Confidence 443
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.6e-08 Score=98.25 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..+.+.+.+.+++.|+++++++.|.+|.. +++++..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 56788888999999999999999999987 3566678899999899999999998853
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-08 Score=94.99 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
-..+.+.+.+.+++.|++|+++++|++|.. ++|+..++...+|..+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 356889999999999999999999999998 455566788888878899999998775
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.3e-09 Score=101.58 Aligned_cols=39 Identities=38% Similarity=0.539 Sum_probs=35.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|+..++||||||||.|||.||..+++.|.+ |+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~---V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLK---VALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCc---EEEEEcccc
Confidence 556689999999999999999999999987 999999865
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=92.44 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--ccCccc--------------------cCCCC-CCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSKAY--------------------LFPEG-TAR 62 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~~~~--------------------~~~~~-~~~ 62 (434)
+||+|||||++|+++|..|++.|.+ |+|+|+........+ .+.... ..... ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~---v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLR---VLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 6999999999999999999999987 999999975322100 000000 00000 000
Q ss_pred CC---CcccccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEcc-CCcEEEcceEEEecCCCcc
Q 013914 63 LP---GFHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLSA-TGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 63 ~~---~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~-~~~~~~~d~lvlAtG~~~~ 127 (434)
.+ .....+.. .....+.+.+.+.|++++.++++..+..+.+. +.+. ++.++++|++|.|+|....
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH
Confidence 00 00000000 00112233344578999999899887665553 3333 3457999999999997643
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.4e-08 Score=89.55 Aligned_cols=117 Identities=19% Similarity=0.181 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCC-----------CCCC------Ccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT-----------ARLP------GFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~-----------~~~~------~~~ 67 (434)
.+||+||||||||++||++|++.|++ |+|+|+....... ....+.+.+... ..++ ++.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~---V~liEk~~~~Ggg--~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~ 99 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLK---VAVFERKLSFGGG--MWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLY 99 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCe---EEEEecCCCCCCc--cccCccccccccchHHHHHHHHHCCCCceeecCcce
Confidence 58999999999999999999999987 9999998653211 000111111000 0000 000
Q ss_pred cccCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC-EEE---cc-----------CCcEEEcceEEEecCCCc
Q 013914 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK-TLL---SA-----------TGLIFKYQILVIATGSTV 126 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~-~v~---~~-----------~~~~~~~d~lvlAtG~~~ 126 (434)
..........+.+...+.|++++.++.+..+..++. .+. .. +..++.++.+|+|||...
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 000000001122334557999999988888765333 221 11 224689999999999643
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4e-07 Score=87.90 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..++.+.+.+.++..|.+++++++|++|..++++++.+|++++|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 4578888889999999999999999999875567888899999999999999998887665
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=89.35 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+...+.+.+++.|++++.+++|++++.+ ++.+..+++.++ ++.+|.||+|+|...
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 3466777888889999999999999999863 444556776655 799999999999643
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=87.31 Aligned_cols=116 Identities=18% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC------C-----CCCCC------cc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG------T-----ARLPG------FH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~------~~ 67 (434)
.+||+|||||+||++||+.|+++|++ |+|+||+...+.. ....+.+.+.. . ..++. +.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~---V~vlEk~~~~Ggg--~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 95 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLK---VCVLERSLAFGGG--SWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYV 95 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcc--ccCCCcceecccccchHHHHHHHCCCCeeeccCceE
Confidence 68999999999999999999999987 9999999764311 00001000000 0 00000 00
Q ss_pred cccCCCCCCCChhhHhhcCcEEEcCCeeEEEECCCC--E---EEcc-----------CCcEEEcceEEEecCCC
Q 013914 68 VCVGSGGERLLPEWYKEKGIELILSTEIVRADIASK--T---LLSA-----------TGLIFKYQILVIATGST 125 (434)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v~~~-----------~~~~~~~d~lvlAtG~~ 125 (434)
..........+.+...+.|++++.++.+..+..++. . +.+. +..+++++.+|.|||..
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~ 169 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHD 169 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCC
Confidence 000000011122234457999999999988775443 2 2221 12468999999999954
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-07 Score=79.13 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=108.5
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----------------------------------
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------- 202 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~---------------------------------- 202 (434)
.+.+...-.++|||+|+.|+-+|..+++.|.+|.++++.+.+....
T Consensus 15 ~~~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 15 DLLDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 3333346689999999999999999999999999999875431000
Q ss_pred ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeCC-----------CcEEECCEEEEcccCcc-Chh
Q 013914 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKD-----------GRTLEADIVVVGVGGRP-LIS 266 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~~~-----------g~~~~~D~vi~a~G~~p-~~~ 266 (434)
...++.+.+.+.+.+.|++++.++.+.++...+++ ++.++.+.. ..+++++.||.|+|... ...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 11244566667778899999999999998764332 567776542 24789999999999644 333
Q ss_pred hhhc--cccc-c-----CCcEE--------eCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 267 LFKG--QVAE-N-----KGGIE--------TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 267 ~~~~--~~~~-~-----~g~i~--------vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
++.. .+.. . .+... |+.+-+ -+|++|++|=.+.-.. |.++=-+....=...|+.||+-++
T Consensus 175 ~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~---~~~rmgp~fg~m~~sg~~~a~~~~ 250 (254)
T TIGR00292 175 VCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVH---GLPRMGPIFGGMLLSGKHVAEQIL 250 (254)
T ss_pred HHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhc---CCCCcCchHHHHHHhhHHHHHHHH
Confidence 3321 1111 0 11111 112222 3899999997665321 111111222223357888888876
Q ss_pred cc
Q 013914 331 AT 332 (434)
Q Consensus 331 ~~ 332 (434)
..
T Consensus 251 ~~ 252 (254)
T TIGR00292 251 EK 252 (254)
T ss_pred HH
Confidence 54
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=89.83 Aligned_cols=89 Identities=15% Similarity=0.135 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcc--CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CC--CcEEEEEeC-C
Q 013914 173 YIGLELSAALKINNIDVSMVYPEPWC--MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-AD--GEVKEVKLK-D 246 (434)
Q Consensus 173 ~~~~e~a~~l~~~g~~v~lv~~~~~~--~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~--g~v~~v~~~-~ 246 (434)
.++.|+...+.++=.++.-+.....+ ....-.+.+...+.+.++++||+|+++++|+++..+ ++ +++.++... +
T Consensus 192 hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~ 271 (576)
T PRK13977 192 HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRN 271 (576)
T ss_pred hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeC
Confidence 57888888887652111111111111 111123678899999999999999999999999874 23 567788774 3
Q ss_pred Cc-----EEECCEEEEcccC
Q 013914 247 GR-----TLEADIVVVGVGG 261 (434)
Q Consensus 247 g~-----~~~~D~vi~a~G~ 261 (434)
|+ ..+.|.||+++|.
T Consensus 272 ~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 272 GKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred CceeEEEecCCCEEEEeCCc
Confidence 32 2458999999995
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-08 Score=97.71 Aligned_cols=123 Identities=22% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-cc-------------Cc-----c-------ccC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL-------------SK-----A-------YLF 56 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~-------------~~-----~-------~~~ 56 (434)
+++||+||||||+|+++|..|+++|.+ |+|||+.+.... .+. .+ .. + ++.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~---v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~ 78 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS---FRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYR 78 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEe
Confidence 468999999999999999999999998 999999864211 000 00 00 0 000
Q ss_pred CCC-CCC--CC---------Cccc--ccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEc---cCCcEEEcc
Q 013914 57 PEG-TAR--LP---------GFHV--CVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKT--LLS---ATGLIFKYQ 116 (434)
Q Consensus 57 ~~~-~~~--~~---------~~~~--~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d 116 (434)
... ... +. .+.. .... .....+.+.+.+.++++..++++++++.+... +.+ .+++++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~ 158 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRAR 158 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeC
Confidence 000 000 00 0000 0000 00011223344568999999999999866554 333 455689999
Q ss_pred eEEEecCCCcccc
Q 013914 117 ILVIATGSTVLRL 129 (434)
Q Consensus 117 ~lvlAtG~~~~~~ 129 (434)
+||.|+|......
T Consensus 159 ~vVgADG~~S~vR 171 (502)
T PRK06184 159 YLVGADGGRSFVR 171 (502)
T ss_pred EEEECCCCchHHH
Confidence 9999999875433
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-07 Score=90.70 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++.+++++++.. +++++.++... ++ ..+.++.||+|+| +..|.+++.
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 356777888888999999999999999987 46777777653 33 3678999999998 455555543
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=89.27 Aligned_cols=56 Identities=27% Similarity=0.296 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~a~G~~ 262 (434)
..+...+.+.+++.|++++.+++|.+++.+ ++.+ .+.+.++ .++.+|.||+|+|..
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcC
Confidence 456677788889999999999999999863 3333 3433322 378999999999954
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-08 Score=94.21 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=36.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|||+.+||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~---v~liE~~~~ 41 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGAS---VALVAPEPP 41 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCe---EEEEeCCCC
Confidence 777889999999999999999999999987 999999864
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.7e-08 Score=97.19 Aligned_cols=99 Identities=20% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||++|+.+|..|++.|.+ |+++++.+... +... +.+ .....+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l------------~~~~---~~~--------~~~~~~~l~~ 210 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSK---VTVLDAASTIL------------PREE---PSV--------AALAKQYMEE 210 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCccC------------CCCC---HHH--------HHHHHHHHHH
Confidence 46899999999999999999998876 99999985421 0000 000 1233456778
Q ss_pred cCcEEEcCCeeEEEECCCCEEE-ccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+. ..++.++.+|.+++|+|.+|+..
T Consensus 211 ~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 211 DGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred cCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcc
Confidence 8999999999999987655443 34566899999999999998754
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-06 Score=85.24 Aligned_cols=57 Identities=28% Similarity=0.364 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|+++...+++.+..+++.+| ++.++.||+|+|-
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg 238 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAG 238 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCCh
Confidence 34556667788899999999999999997644566667888888 6999998888773
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-08 Score=94.46 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-----CCC--ccC---------ccccC---CCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-----ERP--ALS---------KAYLF---PEGTA 61 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-----~~~--~~~---------~~~~~---~~~~~ 61 (434)
|| ++||+|||||++|+++|..|+++|++ |+|+|+.+.... ... .++ -+++. .....
T Consensus 1 ~~--~~dviIvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~ 75 (392)
T PRK09126 1 MM--HSDIVVVGAGPAGLSFARSLAGSGLK---VTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEIS 75 (392)
T ss_pred CC--cccEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCC
Confidence 55 68999999999999999999999997 999999864211 000 000 00000 00000
Q ss_pred CCCCc---------ccccC-----CCCC------CCC----hhh-HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEE
Q 013914 62 RLPGF---------HVCVG-----SGGE------RLL----PEW-YKEKGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~---------~~~~~-----~~~~------~~~----~~~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
..... ..... .... ... .+. .+..|++++.++.++.+..+.. .+.+.++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 76 PLRDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred ccceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 00000 00000 0000 000 111 1235899999999998876554 35566788899
Q ss_pred cceEEEecCCCccccc
Q 013914 115 YQILVIATGSTVLRLT 130 (434)
Q Consensus 115 ~d~lvlAtG~~~~~~~ 130 (434)
+|.+|.|.|.......
T Consensus 156 a~~vI~AdG~~S~vr~ 171 (392)
T PRK09126 156 ARLLVAADSRFSATRR 171 (392)
T ss_pred eCEEEEeCCCCchhhH
Confidence 9999999998665444
|
|
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.7e-07 Score=91.60 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
+..+.+.+.+.+++.|++++++++|++|..++++.+..+.+.+|+++++|.||+|++
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 356778888888889999999999999988667777778888998999999999987
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.5e-08 Score=94.20 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=74.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-ccCc---------cccCC---CCCCCCCCc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-ALSK---------AYLFP---EGTARLPGF 66 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~~~---------~~~~~---~~~~~~~~~ 66 (434)
|++.++||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .++. +++.. ........+
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 77 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHS---VTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAM 77 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCc---EEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccce
Confidence 677789999999999999999999999997 9999998753210 00 0000 00000 000000000
Q ss_pred c----------cccCC---CCC------CCChhh----Hh-hcCcEEEcCCeeEEEECCCC----EEEccCCcEEEcceE
Q 013914 67 H----------VCVGS---GGE------RLLPEW----YK-EKGIELILSTEIVRADIASK----TLLSATGLIFKYQIL 118 (434)
Q Consensus 67 ~----------~~~~~---~~~------~~~~~~----~~-~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~l 118 (434)
. ..... ... ..+.+. +. ..++++..+++++.+..+.. .+...+++++.+|.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~v 157 (388)
T PRK07045 78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVL 157 (388)
T ss_pred EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEE
Confidence 0 00000 000 001111 11 24789999999998876432 366678888999999
Q ss_pred EEecCCCcc
Q 013914 119 VIATGSTVL 127 (434)
Q Consensus 119 vlAtG~~~~ 127 (434)
|.|.|....
T Consensus 158 IgADG~~S~ 166 (388)
T PRK07045 158 VGADGARSM 166 (388)
T ss_pred EECCCCChH
Confidence 999997653
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-07 Score=90.28 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHh----cC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYAN----KG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~----~G--V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++ .| ++++++++|++++.. ++....|.+.+| ++.+|.||+|+|.-
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~ 272 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGY 272 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChh
Confidence 34677788888888 77 889999999999873 344567888888 79999999999953
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=85.77 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|.++..+ ++. ..+.+.++ ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~-~~v~~~~~-~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELL-VTVKTTKG-SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCe-EEEEeCCC-EEEeCEEEEecCcc
Confidence 4566778888889999999999999999873 333 35777666 79999999999953
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=94.18 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=39.3
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.+|.+.+|++|++||+|+|++.. .|..+.. .+...+.-.|+.|+++++.
T Consensus 369 ~~gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 369 TMGGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eCCCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999997532 2322211 3456677778888877654
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6e-07 Score=86.71 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++.+.+.+.+.+. +++++.+++++++..++++ ..+.+.+|+++.+|.||.|.|.....
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG--VTVFDQQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc--eEEEEcCCCEEecCEEEECCCcChHH
Confidence 34556666666665 4999999999999863333 45778889899999999999976544
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-07 Score=84.41 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=65.4
Q ss_pred HHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 182 LKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 182 l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+...|....++....+.+....-+.+.+.+.+.+++.|++++++++|..++. +++.+..+.+++|.++++|.||+|+|+
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCc
Confidence 4444555555543333333334578889999999999999999999999987 455577899999999999999999998
Q ss_pred ccChhh
Q 013914 262 RPLISL 267 (434)
Q Consensus 262 ~p~~~~ 267 (434)
+....+
T Consensus 229 sg~dw~ 234 (486)
T COG2509 229 SGRDWF 234 (486)
T ss_pred chHHHH
Confidence 876653
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=88.21 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHHHHhCCCeEEEEccCCccCCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 177 ELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 177 e~a~~l~~~g~~v~lv~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
++...+.+.|.+++..... +..|. ....++.+.+.+.+++.|++++.++.+.++..+ ++ ...+++ +++++.+|.|
T Consensus 77 d~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 77 DLIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEE-CCcEEEcCEE
Confidence 3445566678777765433 33322 134778889999999999999999999999763 22 345666 4568999999
Q ss_pred EEcccCc
Q 013914 256 VVGVGGR 262 (434)
Q Consensus 256 i~a~G~~ 262 (434)
|+|+|..
T Consensus 153 IlAtG~~ 159 (400)
T TIGR00275 153 ILATGGL 159 (400)
T ss_pred EECCCCc
Confidence 9999963
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.5e-08 Score=92.11 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--------cc---------CccccCCC-----
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--------AL---------SKAYLFPE----- 58 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--------~~---------~~~~~~~~----- 58 (434)
|..+.+||+|||||++|+++|..|++.|++ |+|||+.+...+... .+ .-+++...
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~---V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~ 77 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFS---VAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRS 77 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCE---EEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhC
Confidence 556679999999999999999999999987 999999753221100 00 00000000
Q ss_pred CC-CC-----CCCcccccC-----CCC------C----CCChhhHhhc-CcEEEcCCeeEEEECCCCE--EEccCCcEEE
Q 013914 59 GT-AR-----LPGFHVCVG-----SGG------E----RLLPEWYKEK-GIELILSTEIVRADIASKT--LLSATGLIFK 114 (434)
Q Consensus 59 ~~-~~-----~~~~~~~~~-----~~~------~----~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~ 114 (434)
.. .. ......... ... . ..+.+.+.+. +++++.++.++.+..+... +.+.++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 157 (391)
T PRK08020 78 HPYRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQ 157 (391)
T ss_pred cccceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEE
Confidence 00 00 000000000 000 0 0111112333 8999999899988765543 5556777899
Q ss_pred cceEEEecCCCccc
Q 013914 115 YQILVIATGSTVLR 128 (434)
Q Consensus 115 ~d~lvlAtG~~~~~ 128 (434)
+|.+|.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999986543
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.7e-07 Score=84.96 Aligned_cols=56 Identities=18% Similarity=0.155 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+.+.|++++.+++|+++...+ + ...+.+++| ++.+|.||+|+|..
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADG-D-GVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeC-C-eEEEEeCCC-EEEeeEEEEecCcc
Confidence 45666677777888999999999999998733 3 246777777 79999999999964
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-08 Score=93.07 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCCCCC---CC-ccC---------ccccCC----C-------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVAPYE---RP-ALS---------KAYLFP----E------- 58 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~~~~---~~-~~~---------~~~~~~----~------- 58 (434)
++||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++ -+++.. .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~---v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 77 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLP---VTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMV 77 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCE---EEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEE
Confidence 379999999999999999999985 65 9999998642111 10 000 000000 0
Q ss_pred ----CC---CCCCCcccc----cCCC---------CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcc
Q 013914 59 ----GT---ARLPGFHVC----VGSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 59 ----~~---~~~~~~~~~----~~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
.. ......... .+.. ....+.+.+.+.|++++.++.++.++.+... +.+.++.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 157 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEAR 157 (403)
T ss_pred EEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 00 000000000 0000 0011222334568999999999998766654 555677889999
Q ss_pred eEEEecCCCccccc
Q 013914 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lvlAtG~~~~~~~ 130 (434)
.+|.|+|.......
T Consensus 158 ~vI~AdG~~S~vr~ 171 (403)
T PRK07333 158 LLVAADGARSKLRE 171 (403)
T ss_pred EEEEcCCCChHHHH
Confidence 99999998765443
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.4e-08 Score=94.26 Aligned_cols=58 Identities=34% Similarity=0.637 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..+.+.|.+..++.||+++.++ |..+..+++|.+..|++++|+++++|++|=|+|++.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 4677888888999999999885 777777678889999999999999999999999754
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-07 Score=89.91 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|.+++. ++ ...|.+.+| ++.+|.||+|+|.
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~~-~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE--GQ-PAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee--CC-ceEEEeCCc-EEECCEEEEcccc
Confidence 456778888889999999999999999975 22 245777777 6999999999993
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.1e-07 Score=89.51 Aligned_cols=122 Identities=18% Similarity=0.151 Sum_probs=71.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--cCc---cccCCCCCC-----CCC--Cccc-
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---AYLFPEGTA-----RLP--GFHV- 68 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---~~~~~~~~~-----~~~--~~~~- 68 (434)
|+.++|+|||||++|+++|..|++.|++ |+|+|+.+.....+. . +.. ..+...... ..+ ....
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 80 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD---VDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYL 80 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEE
Confidence 4468999999999999999999999987 999999864211110 0 000 000000000 000 0000
Q ss_pred -ccCCC-----------CCCCChhhHh-h-cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcc
Q 013914 69 -CVGSG-----------GERLLPEWYK-E-KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 69 -~~~~~-----------~~~~~~~~~~-~-~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
..+.. ....+...+. . .+++++.++.++.+..+... +.+.+|+++.+|.||.|-|....
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 81 DRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred eCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 00000 0000111111 1 24678899999999766554 56678889999999999997543
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=91.14 Aligned_cols=99 Identities=21% Similarity=0.289 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +.+ .. .. .....+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~~---~~--------~~~~~~~l~~ 223 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSK---VTVIEMLDRIL---PGE---------DA---EV--------SKVVAKALKK 223 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCCCC---CCC---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999986421 000 00 00 1233456777
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+.+ ...++ .++.+|.+++|+|..|+..
T Consensus 224 ~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 224 KGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 899999999999988665544 33455 4799999999999998755
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-07 Score=85.36 Aligned_cols=52 Identities=23% Similarity=0.337 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+.+. |++++.+++|.+++. + .+.+.+| ++.+|.||+|+|..
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGAD 196 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCC
Confidence 455667777777665 999999999999964 2 5677777 47899999999964
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-07 Score=86.41 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeC-CCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLK-DGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~-~g~~~~~D~vi~a~G~~p~ 264 (434)
-.++.+.+.+.+.+.+ |+++.+++|+.++.+++ .+ .++++ +|++++||++|-|=|....
T Consensus 103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v-~v~l~~dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GV-TVTLSFDGETLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ce-EEEEcCCCcEEecCEEEECCCCchH
Confidence 4567778888887766 99999999999998443 33 37777 9999999999999996543
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-07 Score=89.70 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-----~~~~D~vi~a~G~ 261 (434)
...+.+.+.+.+++.|++++++++|++|...+++++.++.+.+|+ ++.+|.||+|+..
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 355678888888889999999999999986566777788887665 7899999999874
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-08 Score=94.84 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CCC-cc---------Cccc---------------cCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ERP-AL---------SKAY---------------LFPE 58 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~~-~~---------~~~~---------------~~~~ 58 (434)
++||+||||||+|+++|..|++.|.+ |+|||+.+.... .+. .+ .-++ +...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVK---TCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 48999999999999999999999997 999999865211 110 00 0000 0000
Q ss_pred C-CCCCCC------cccccCC-CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--Ecc--CC-cEEEcceEEEecCCC
Q 013914 59 G-TARLPG------FHVCVGS-GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSA--TG-LIFKYQILVIATGST 125 (434)
Q Consensus 59 ~-~~~~~~------~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~--~~-~~~~~d~lvlAtG~~ 125 (434)
. ...+.. +...... .....+.+.+++.++++..++.++++..+...+ .+. ++ .++++|++|.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 0 000000 0000000 001112233445689999999999987666543 332 34 479999999999987
Q ss_pred ccccc
Q 013914 126 VLRLT 130 (434)
Q Consensus 126 ~~~~~ 130 (434)
.....
T Consensus 159 S~vR~ 163 (493)
T PRK08244 159 SIVRK 163 (493)
T ss_pred hHHHH
Confidence 64433
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.2e-08 Score=80.06 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..||+|+|+||+||+||++|++.|++ |+++|++-.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~k---V~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLK---VAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCce---EEEEEeecc
Confidence 36999999999999999999999998 999999855
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=91.88 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=34.6
Q ss_pred CC-CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MA-EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~-~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|| ...+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~---v~liE~~~~ 40 (407)
T PRK06185 1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVD---VTVLEKHAD 40 (407)
T ss_pred CCccccccEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 54 4579999999999999999999999987 999999753
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=91.77 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=68.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCccCccccCCCC----CCCCC----------C--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPEG----TARLP----------G-- 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~~----~~~~~----------~-- 65 (434)
+..|||||||||+||+.||..+++.|.+ |+|+|++. ..+...|..+.+...... ...+. .
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~k---V~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq 78 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAK---TLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ 78 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCc---EEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence 4569999999999999999999999998 99999984 222211111111100000 00000 0
Q ss_pred cccc---cCCC--------CC----CCChhhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCC
Q 013914 66 FHVC---VGSG--------GE----RLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGST 125 (434)
Q Consensus 66 ~~~~---~~~~--------~~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~ 125 (434)
+... .+.. .. ....+.+.+ .+++++.. .|..+..++.. |.+.+|..+.++.+|+|||..
T Consensus 79 ~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~-~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 79 FRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQG-EVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred eeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0000 0000 00 001112222 37888764 78777655543 566788899999999999974
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=91.60 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCC-----CCCC-ccC---------ccccCCCC---CC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAP-----YERP-ALS---------KAYLFPEG---TA 61 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~-----~~~~-~~~---------~~~~~~~~---~~ 61 (434)
|| ..+||+|||||++|+++|..|++.|++ |+|+|+.. ... ..+. .++ -+++..-. ..
T Consensus 1 ~m-~~~dV~IvGaG~~Gl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~ 76 (405)
T PRK08850 1 MM-QSVDVAIIGGGMVGLALAAALKESDLR---IAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAA 76 (405)
T ss_pred CC-CcCCEEEECccHHHHHHHHHHHhCCCE---EEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCC
Confidence 55 478999999999999999999999987 99999962 110 0010 010 00000000 00
Q ss_pred CCCCcccc---------cCCC-C----------C----CCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEE
Q 013914 62 RLPGFHVC---------VGSG-G----------E----RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFK 114 (434)
Q Consensus 62 ~~~~~~~~---------~~~~-~----------~----~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~ 114 (434)
....+... +... . . ..+.+.+.+ .++++..+++++.+..+.. ++.+.++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 156 (405)
T PRK08850 77 PYIAMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALT 156 (405)
T ss_pred cccEEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEE
Confidence 00000000 0000 0 0 001111122 3689999999998866544 46667888999
Q ss_pred cceEEEecCCCcccc
Q 013914 115 YQILVIATGSTVLRL 129 (434)
Q Consensus 115 ~d~lvlAtG~~~~~~ 129 (434)
+|.||.|.|......
T Consensus 157 a~lvIgADG~~S~vR 171 (405)
T PRK08850 157 AKLVVGADGANSWLR 171 (405)
T ss_pred eCEEEEeCCCCChhH
Confidence 999999999765433
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-06 Score=86.85 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=81.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCccCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
...++|||+|+.|+.+|..+++.|.+|+++... ..+ .+.....++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999998652 111 0111356788899999999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
++...+ ....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 291 ~I~~~~--~~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA--GLIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC--CeEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 998732 3356778888899999999999987753
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-07 Score=77.60 Aligned_cols=98 Identities=30% Similarity=0.434 Sum_probs=68.4
Q ss_pred EEECCCHHHHHHHHHHHhCCCe-EEEEccCCccC--------------Ccc----------------------------C
Q 013914 167 VVVGGGYIGLELSAALKINNID-VSMVYPEPWCM--------------PRL----------------------------F 203 (434)
Q Consensus 167 ~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~--------------~~~----------------------------~ 203 (434)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+. +.. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 99999874431 000 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS 266 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~--~p~~~ 266 (434)
.+++.+++++..++.+++++++++|+++...+++ ..+++.+++++.||.||+|+|. .|...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245678888899999999999999999985555 7899999988999999999995 55544
|
... |
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-07 Score=91.35 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-------CC-ccC---------ccccCCCC---CCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-------RP-ALS---------KAYLFPEG---TARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-------~~-~~~---------~~~~~~~~---~~~~~ 64 (434)
.+||+||||||+|+++|..|++.|++ |+|+|+.+..... +. .++ -+++.... .....
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~---v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~ 79 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLR---VAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH 79 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCE---EEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc
Confidence 68999999999999999999999987 9999998652110 00 000 01110000 00000
Q ss_pred Ccc---------ccc-----CCCC--C--------CCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcce
Q 013914 65 GFH---------VCV-----GSGG--E--------RLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (434)
Q Consensus 65 ~~~---------~~~-----~~~~--~--------~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (434)
.+. ..+ +... . ..+.+.+.. .+++++.++++..++.+.. ++.+.+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~l 159 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARL 159 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeE
Confidence 000 000 0000 0 001111223 3799999999999876554 35567888999999
Q ss_pred EEEecCCCcccc
Q 013914 118 LVIATGSTVLRL 129 (434)
Q Consensus 118 lvlAtG~~~~~~ 129 (434)
||-|.|......
T Consensus 160 vVgADG~~S~vR 171 (400)
T PRK08013 160 VVGADGANSWLR 171 (400)
T ss_pred EEEeCCCCcHHH
Confidence 999999765443
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-06 Score=86.66 Aligned_cols=102 Identities=24% Similarity=0.241 Sum_probs=81.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC-----------CccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~~-----------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
....++|||+|+.|+.+|..+++.|.+|+++... ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999998631 1111 11134677888888899999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++...+ ....+.+.+|+.+.+|.+|+|+|.+|..
T Consensus 291 ~~I~~~~--~~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETED--GLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecC--CeEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9997632 2356777888889999999999987643
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-07 Score=89.05 Aligned_cols=116 Identities=18% Similarity=0.304 Sum_probs=68.7
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC-------CCCCCCcccccCCC----
Q 013914 7 KYVILGGGVSAGYAAREF--AKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-------TARLPGFHVCVGSG---- 73 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l--~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---- 73 (434)
||||||||+||+++|..| ++.|.+ |+|||++...++.... ...++.... ...++.........
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~---Vllid~~~~~~~~~~~-tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~ 76 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLS---VLLIDPKPKPPWPNDR-TWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRIL 76 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCE---EEEEcCCccccccCCc-ccccccccccchHHHHheecCceEEEeCCCceEE
Confidence 899999999999999999 555555 9999998765433222 111111110 01111111110000
Q ss_pred ---CC-----CCChh----hHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcc
Q 013914 74 ---GE-----RLLPE----WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 74 ---~~-----~~~~~----~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
.+ ..+.+ .+...++ .+.+..|..|+.... .+.+.+|.+++++.+|-|+|..+.
T Consensus 77 ~~~~Y~~i~~~~f~~~l~~~~~~~~~-~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 77 IDYPYCMIDRADFYEFLLERAAAGGV-IRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred cccceEEEEHHHHHHHHHHHhhhCCe-EEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 00 01111 1222344 445568999988776 567788889999999999995543
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-07 Score=90.42 Aligned_cols=123 Identities=17% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC--C------ccC---------ccccCCCC---CCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER--P------ALS---------KAYLFPEG---TARLP 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~--~------~~~---------~~~~~~~~---~~~~~ 64 (434)
.+||+|||||++|+++|..|++.|++ |+|||+.+...+.. + .++ -+++..-. ...+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~ 79 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRS---VAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK 79 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc
Confidence 58999999999999999999999987 99999875211110 0 010 00000000 00000
Q ss_pred Cc--------ccccC-----CCC--C----CCCh----hhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceE
Q 013914 65 GF--------HVCVG-----SGG--E----RLLP----EWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQIL 118 (434)
Q Consensus 65 ~~--------~~~~~-----~~~--~----~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~l 118 (434)
.+ ...+. ... . ..+. +.+.. .+++++.++++.+++.+.. ++++.++.++++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lv 159 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWV 159 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEE
Confidence 00 00000 000 0 0000 11112 3689999999998876554 567788889999999
Q ss_pred EEecCCCccccc
Q 013914 119 VIATGSTVLRLT 130 (434)
Q Consensus 119 vlAtG~~~~~~~ 130 (434)
|.|.|.......
T Consensus 160 IgADG~~S~vR~ 171 (384)
T PRK08849 160 IGADGANSQVRQ 171 (384)
T ss_pred EEecCCCchhHH
Confidence 999998765443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.3e-07 Score=91.24 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+...+.+.+++ |++++.+++|+++... ++. ..+.+.+|..+.+|.||+|+|...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLERE-DDG-WQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCE-EEEEECCCcEEECCEEEECCCCCc
Confidence 45777888888888 9999999999999863 333 347788887788999999999643
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=90.45 Aligned_cols=123 Identities=18% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC--C------CC-CC-cc---C------ccccCCCC---CCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA--P------YE-RP-AL---S------KAYLFPEG---TAR 62 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~--~------~~-~~-~~---~------~~~~~~~~---~~~ 62 (434)
.+||+|||||++|+++|..|++.|++ |+|||+.+.. . +. +. .+ + -+++..-. ...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~ 78 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLE---VLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASP 78 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCE---EEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcc
Confidence 48999999999999999999999987 9999998621 0 00 00 00 0 00000000 000
Q ss_pred CCCc-----------cccc---CCCC----------CCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcc
Q 013914 63 LPGF-----------HVCV---GSGG----------ERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGLIFKYQ 116 (434)
Q Consensus 63 ~~~~-----------~~~~---~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d 116 (434)
...+ .+.. .... ...+.+.+.+.+++++.++.+.+++.+... +.+.++.++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~ 158 (405)
T PRK05714 79 YSEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAP 158 (405)
T ss_pred ceeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeC
Confidence 0000 0000 0000 001112233468999999999998765543 556778889999
Q ss_pred eEEEecCCCccccc
Q 013914 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lvlAtG~~~~~~~ 130 (434)
.+|.|.|.......
T Consensus 159 ~vVgAdG~~S~vR~ 172 (405)
T PRK05714 159 LVVAADGANSAVRR 172 (405)
T ss_pred EEEEecCCCchhHH
Confidence 99999997654433
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-06 Score=82.36 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.| ..+..++.+..+... . ....+.+.+|+ +.+|.||+|+|..
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchH
Confidence 4577888888899999 456668888888763 2 56788888886 9999999999943
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-07 Score=91.85 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||+|||||++|+++|..|+++|++ |+|+|+.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~---v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVD---SILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCC
Confidence 4468999999999999999999999998 999999864
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=85.63 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC--cEEECCEEEEccc-CccChhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG--RTLEADIVVVGVG-GRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g--~~~~~D~vi~a~G-~~p~~~~~ 268 (434)
...+.+.+.+.+++.|++++++++++++.. +++++.++.. .++ .++.++.||+|+| +.+|.+++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~ 257 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMI 257 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHH
Confidence 456778888889999999999999999986 4677766655 343 2588999999998 77665544
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.4e-08 Score=74.94 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 377 ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 377 ~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
..++|+|+++ ++++|||+|++|++++|+ +.++.+|++++|++++.....+.++|.+.
T Consensus 46 ~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~ 105 (110)
T PF02852_consen 46 ETEGFVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEA 105 (110)
T ss_dssp TTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHH
T ss_pred CcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHH
Confidence 3678889887 479999999999999995 99999999999999777777777777653
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=83.28 Aligned_cols=135 Identities=19% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc---------------------------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL--------------------------------------- 202 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~--------------------------------------- 202 (434)
..++|+|||+|++|+-+|..|.+.|.+|+++++.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 36899999999999999999999999999998764321000
Q ss_pred --------------------CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCC--c--EEECCEEE
Q 013914 203 --------------------FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDG--R--TLEADIVV 256 (434)
Q Consensus 203 --------------------~~~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~g~v~~v~~~~g--~--~~~~D~vi 256 (434)
-..++.+++++..++.|+. ++++++|.+++..+ ....|++.++ . +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEcCCCceEEEEcCEEE
Confidence 0146778888888899988 88999999998732 2345655432 2 45799999
Q ss_pred Eccc--CccChhhhhccccccCCcEEeCCCCCC----CCCcEEEecccc
Q 013914 257 VGVG--GRPLISLFKGQVAENKGGIETDDFFKT----SADDVYAVGDVA 299 (434)
Q Consensus 257 ~a~G--~~p~~~~~~~~~~~~~g~i~vd~~~~t----~~~~iya~GD~~ 299 (434)
+|+| ..|+..-++..-.+.+..+.... ++. ..++|-++|-..
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~-yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHN-YRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEecc-cCCccccCCCEEEEECCCc
Confidence 9999 56665433221112222233322 232 356788888543
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=81.82 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 205 ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 205 ~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+.+.+.+.+++.| ++++.+++|++++.+++ . ..+++++|+++.+|+||.|.|....
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~-~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSD-H-VELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-e-eEEEECCCCEEEeeEEEEeCCCCCH
Confidence 456677777777877 99999999999987333 3 4678889989999999999997543
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=73.45 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred EEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013914 9 VILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (434)
Q Consensus 9 vIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~ 42 (434)
+|||+|++|++++.+|.++. .+..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 44678999999765
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=89.65 Aligned_cols=36 Identities=22% Similarity=0.499 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||+||+++|..|++.|++ |+|+|+.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLR---IALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCE---EEEEecCCc
Confidence 368999999999999999999999987 999999865
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=92.35 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~---v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP---VVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999999987 999999874
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=88.76 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
++||+|||||+||+++|..|++.|.+ |+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLR---VALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCe---EEEEecCCCc
Confidence 68999999999999999999999987 9999998653
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-07 Score=90.65 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++.|.+ |+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~---v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVR---VLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCC
Confidence 368999999999999999999999987 999999864
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=87.95 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++++|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence 457788888889999999999999999873 3444333 356678999999999984
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=88.88 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=34.5
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.+++++.++.++.+...... +.+.++.++.+|.+|.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhh
Confidence 47899999899988765543 556677789999999999976543
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.1e-07 Score=85.63 Aligned_cols=99 Identities=15% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-c-cCCHHHH---------HHHHHHHHhcCcEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-R-LFTADIA---------AFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~-~-~~~~~~~---------~~~~~~l~~~GV~~~~~~~v~ 229 (434)
.++++|||+|+.|+.+|..|++.+. +|+++.+.+.+.- + .+.+.+. ..-.+.+++.+|+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 5689999999999999999999875 7999987654311 0 1222111 001344677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++. +. ..+.+.+|+++.+|.+|+|||.+|..
T Consensus 83 ~id~--~~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGR--DT--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEC--CC--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 9976 33 25677888899999999999988753
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-07 Score=90.67 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=67.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc-cCccccCCCC-----CCCCCCccccc--------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA-LSKAYLFPEG-----TARLPGFHVCV-------- 70 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~-------- 70 (434)
.+||+||||||||+++|..|++.|++ |+|||+.. ++..+. .+...+.... ....++.....
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~---V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~ 182 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLN---VGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMI 182 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCc---EEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeec
Confidence 58999999999999999999999987 99999863 222110 1000000000 00000000000
Q ss_pred CCCC----C----CCChhhHhhcCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCc
Q 013914 71 GSGG----E----RLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 71 ~~~~----~----~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
+... . ..+.+.+.+.|+++. +..|..+..+... +...++.++.++.+|.|+|...
T Consensus 183 ~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 183 GRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0000 0 111122234688884 4588888754432 3456777899999999999765
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=85.19 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=67.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCCc---cCc---------cccCCCCC-C-----CCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERPA---LSK---------AYLFPEGT-A-----RLP 64 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~~---~~~---------~~~~~~~~-~-----~~~ 64 (434)
+||+||||||||+++|..|++. ++ |+|+|+.+.. ++..++ ++. ++..+... . ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~---V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MK---VIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CC---EEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee
Confidence 7999999999999999999997 76 9999998642 121111 110 00000000 0 000
Q ss_pred Ccccc------cCCCC----CCCChhhH---hhcCcEEEcCCeeEEEECCCCE--EEc-cCCc--EEEcceEEEecCCCc
Q 013914 65 GFHVC------VGSGG----ERLLPEWY---KEKGIELILSTEIVRADIASKT--LLS-ATGL--IFKYQILVIATGSTV 126 (434)
Q Consensus 65 ~~~~~------~~~~~----~~~~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~-~~~~--~~~~d~lvlAtG~~~ 126 (434)
..... .+... ...+..++ ...++++..++.+..+...... +.. .++. ++++|.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 78 TIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred EecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 00000 00000 00111222 2357899999888888765543 333 3553 689999999999865
Q ss_pred cc
Q 013914 127 LR 128 (434)
Q Consensus 127 ~~ 128 (434)
..
T Consensus 158 ~v 159 (351)
T PRK11445 158 MV 159 (351)
T ss_pred HH
Confidence 43
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-07 Score=93.55 Aligned_cols=56 Identities=21% Similarity=0.194 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.++++|++++.+++|++|.. +++++..|.+.+|+++++|.||+++|.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~ 284 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATR 284 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCCh
Confidence 56788889999999999999999999987 457788999999989999999999884
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-06 Score=82.28 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+.+.+.+.+++.|++++++++++++..++++++.++...+ ++ .+.+ +.||+|+| +..|.+++.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHH
Confidence 4567788888889999999999999999875567887776643 32 4778 99999999 455555554
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=85.86 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--C---------ccccCC--CCCCCCCCcc-----
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S---------KAYLFP--EGTARLPGFH----- 67 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~---------~~~~~~--~~~~~~~~~~----- 67 (434)
+||+|||||++|+++|..|++.|++ |+|+|+.+...-....+ . -+++.. ..........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~ 78 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS---VTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRD 78 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC---EEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCC
Confidence 4899999999999999999999987 99999986522100000 0 000000 0000000000
Q ss_pred --------------cccCCCCC----CCChhhHh---hcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCC
Q 013914 68 --------------VCVGSGGE----RLLPEWYK---EKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 68 --------------~~~~~~~~----~~~~~~~~---~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~ 124 (434)
........ ..+.+.+. ..+++++.+++++.++.+... +.+.++.++.+|.||-|.|.
T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 79 GNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred CCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 00000000 01112222 257899999999998765543 56678888999999999997
Q ss_pred Ccc
Q 013914 125 TVL 127 (434)
Q Consensus 125 ~~~ 127 (434)
...
T Consensus 159 ~S~ 161 (372)
T PRK05868 159 HSN 161 (372)
T ss_pred Cch
Confidence 543
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.3e-07 Score=87.77 Aligned_cols=37 Identities=24% Similarity=0.514 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..++||+||||||||+++|..|++.|++ |+|+|+...
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~---VlllEr~~~ 73 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIE---TFLIERKLD 73 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 3469999999999999999999999997 999999753
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-07 Score=66.42 Aligned_cols=78 Identities=19% Similarity=0.417 Sum_probs=57.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+++|||||+.|+-+|..|++.|.+ |+||++++... +... .. ......+.+++.|
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~---vtli~~~~~~~---~~~~---------~~-----------~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKE---VTLIERSDRLL---PGFD---------PD-----------AAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSE---EEEEESSSSSS---TTSS---------HH-----------HHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcE---EEEEeccchhh---hhcC---------HH-----------HHHHHHHHHHHCC
Confidence 589999999999999999999876 99999987522 0000 00 0124467788899
Q ss_pred cEEEcCCeeEEEECCCCE--EEccCC
Q 013914 87 IELILSTEIVRADIASKT--LLSATG 110 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~--v~~~~~ 110 (434)
++++.++.+.++..+... |.+.||
T Consensus 55 V~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 55 VEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp EEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 999999999999877654 555443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.6e-07 Score=87.78 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~a~G~ 261 (434)
-..+.+.+.+.+++.|++++++++|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 3568888999999999999999999999873 455555666554 57899999999884
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=92.11 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g--~~~~~D~vi~a~G~~ 262 (434)
+..+...+...++++|++++.+++|+++.. +++++.++++. ++ .++.+|.||.|+|.-
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 456667777778899999999999999987 34566666652 23 378999999999953
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=78.17 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C---------cEEECCEEEEcccCc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G---------RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~------g---------~~~~~D~vi~a~G~~ 262 (434)
..+.+++-+..++.||+++++....++..+++|.+.++.+.| | -++.+..-|+|-|-+
T Consensus 183 ~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 183 GQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 345677778889999999999999999888899999988765 2 267788888887744
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=82.39 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~-~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.....+.++..+++.|+.|+.+..++.+.. ++++....|.+.+|..+.++.+|+++|-
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecH
Confidence 456678899999999999999999988863 3456778899999999999999999994
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.2e-06 Score=81.18 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcCc-EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGI-KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV-~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+...+...++..+. +++++++|++|+..+++ ..+.+.+|+++.+|.||+|+..
T Consensus 218 ~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 218 GGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred cHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCH
Confidence 3344444444444443 89999999999874333 4677888989999999999883
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=83.42 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cC---------ccccCC--CCCCCCCCcccc--cC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LS---------KAYLFP--EGTARLPGFHVC--VG 71 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~--~~ 71 (434)
||+|||||++|+++|..|++.|++ |+|+|+.+........ +. -+++.. ........+... .+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~---v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE---VKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 799999999999999999999987 9999998753211000 00 000000 000000000000 00
Q ss_pred -----------CCCC----CCChhhHhh--cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcc
Q 013914 72 -----------SGGE----RLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 72 -----------~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
.... ..+...+.+ .+.+++.++.+++++.++.. +++.++.++.+|.||.|.|....
T Consensus 79 ~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 79 TLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 0000 011122222 24578889999999766553 55678888999999999996543
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-06 Score=82.35 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=33.2
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+++++++|.+|+..+++ ..+++++|+++.+|.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSN--YTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCc--EEEEECCCcEEEcCEEEECCCH
Confidence 789999999999874444 4577888888999999999884
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=86.86 Aligned_cols=32 Identities=25% Similarity=0.616 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
|||+||||||||+++|+.|++.|++ |+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~---V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIE---TILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 6999999999999999999999987 9999998
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=84.58 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=70.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc-Cc--------cc----cCCCC-CCCC-----C
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL-SK--------AY----LFPEG-TARL-----P 64 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~-~~--------~~----~~~~~-~~~~-----~ 64 (434)
.||+|||||++|+++|..|++.|.+ |+|+|+.+...-... .+ .. ++ ..... ...+ .
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHE---PTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCc---eEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 3899999999999999999999987 999999865211000 00 00 00 00000 0000 0
Q ss_pred C-----ccc-----ccCCCCCCC----ChhhH---hhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCC
Q 013914 65 G-----FHV-----CVGSGGERL----LPEWY---KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGST 125 (434)
Q Consensus 65 ~-----~~~-----~~~~~~~~~----~~~~~---~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~ 125 (434)
+ +.. ..+...... +...+ ...+++++.++.+.+++.+... +.+.+|+++.+|.+|.|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 000 000000000 11111 1236899999999999876654 556788889999999999976
Q ss_pred cccc
Q 013914 126 VLRL 129 (434)
Q Consensus 126 ~~~~ 129 (434)
....
T Consensus 158 S~vR 161 (391)
T PRK07588 158 SHVR 161 (391)
T ss_pred ccch
Confidence 5443
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-05 Score=78.24 Aligned_cols=58 Identities=28% Similarity=0.494 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
...+.+.+.+.+++.| ++++++++|++++..+++.+ .+.+ .+|+ ++.++.||+|+|.-
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 4567788888888876 89999999999987555533 2332 3453 68999999999964
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-07 Score=87.38 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++++++.. +++++.++... +|+ ++.++.||+|+|--..
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 467788889999999999999999999988 57788888776 454 5779999999995443
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-06 Score=80.37 Aligned_cols=102 Identities=26% Similarity=0.342 Sum_probs=79.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 200 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~------------------------------------------ 200 (434)
.++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 56899999999999999999999999999987642100
Q ss_pred ---c----------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 201 ---R----------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 201 ---~----------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
. ....++.+.+.+.+++.|+++++++++.+++.++++ ..+.+.+|+++.+|.||.|.|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCC
Confidence 0 001345566777778889999999999999873333 5678889999999999999997
Q ss_pred ccChh
Q 013914 262 RPLIS 266 (434)
Q Consensus 262 ~p~~~ 266 (434)
.+...
T Consensus 162 ~s~~r 166 (375)
T PRK06847 162 YSKVR 166 (375)
T ss_pred Ccchh
Confidence 76553
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-07 Score=90.15 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCC----------------CCCCC------C
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE----------------GTARL------P 64 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~----------------~~~~~------~ 64 (434)
||||||||+||++||..+++.|.+ |+|||+.+.++.....-....+... ..... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~---VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAK---VLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCE---EEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 899999999999999999999998 9999999874321100000000000 00000 0
Q ss_pred Ccc----cccCCC-CCCCChhhHhhcCcEEEcCCeeEEEECCCCE---EEccC---CcEEEcceEEEecCC
Q 013914 65 GFH----VCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSAT---GLIFKYQILVIATGS 124 (434)
Q Consensus 65 ~~~----~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~---~~~~~~d~lvlAtG~ 124 (434)
... ..+... ....+.+++.+.|++++.++.+..+..++.. |.+.+ ..++.++.+|-|||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 000101 1123455566789999999999998887744 33433 357999999999994
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-06 Score=85.71 Aligned_cols=100 Identities=18% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|++|+.+|..|++.|.+ |+++++.+... . +. + ...+ .....+.+++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~~-~-~~-----~----~~~~-----------~~~~~~~l~~ 191 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKN---VTLIHRSERIL-N-KL-----F----DEEM-----------NQIVEEELKK 191 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCc---EEEEECCcccC-c-cc-----c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999998876 99999875421 0 00 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+.+++++.+|.+++|+|.+|+..
T Consensus 192 ~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 192 HEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred cCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 899999999999998766544566788899999999999988643
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=81.90 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=65.9
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCccCccccCCCC------------CCCCCCcccccCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEG------------TARLPGFHVCVGS 72 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 72 (434)
||+|||||+||+++|..|++. |++ |+|+|+.+...-++.+ .++.... ....+.+......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~---V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~ 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFR---IRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPK 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCe---EEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcc
Confidence 799999999999999999987 666 9999998643221111 1111000 0111111111100
Q ss_pred C------CC-----CCChhh-HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCc
Q 013914 73 G------GE-----RLLPEW-YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 73 ~------~~-----~~~~~~-~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
. .+ ..+.+. +++.+..+..+..|..++.+ .+++.+|++++++.+|-|.|..+
T Consensus 75 ~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 75 YRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0 00 011111 22224446667788888543 46668888999999999999765
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.6e-07 Score=85.82 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=40.7
Q ss_pred cCCcEEeCCCCCCCCCcEEEeccccc-ccccccCccee-cccHHHHHHHHHHHHHHHhc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVAT-FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~-~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 331 (434)
..|+|.||...||+.||+||+|.|+. .. .+..+. -.....+.-.|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999974 22 222221 13557778889999998864
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.5e-07 Score=83.76 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=62.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCCCCCCCccC-----ccccCCC------------CCCC------
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVAPYERPALS-----KAYLFPE------------GTAR------ 62 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~~~~~~~~~-----~~~~~~~------------~~~~------ 62 (434)
||+|||||+||..||+.+++.|.+ |+|+..+ +......|..+ ++.+..+ +...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~---V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~l 77 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAK---VLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRML 77 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-----EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC---EEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcc
Confidence 799999999999999999999998 9999433 22211111111 1110000 0000
Q ss_pred -----CCCcccccCCCCCCCCh----hhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCC
Q 013914 63 -----LPGFHVCVGSGGERLLP----EWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 63 -----~~~~~~~~~~~~~~~~~----~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~ 124 (434)
.+....... .+...+. +.++. .+++++.+ +|..+..++.. |.+.+|..+.+|.+|+|||.
T Consensus 78 N~skGpav~a~r~q-vDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 78 NRSKGPAVHALRAQ-VDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTS-GGCTEEEEE-E-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred cccCCCCccchHhh-ccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 000000000 0001111 22223 58999875 89999887765 56788999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=82.27 Aligned_cols=56 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
...+...+....++...+++++++|++|..+..+ ..+.+.+|.++.+|.||+++..
T Consensus 211 ~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~--~~~~~~~g~~~~~D~VI~t~p~ 266 (444)
T COG1232 211 RGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAG--KTIVDVGGEKITADGVISTAPL 266 (444)
T ss_pred CccHHHHHHHHHHHhhhceeecceeeEEEEcCCc--cEEEEcCCceEEcceEEEcCCH
Confidence 3334444444444444459999999999984333 5778888989999999998874
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-07 Score=86.88 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+|||||++|+++|..|+++|++ |+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~---v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID---VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE---EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc---cccchhccc
Confidence 6999999999999999999999998 999999876
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-07 Score=85.68 Aligned_cols=118 Identities=19% Similarity=0.248 Sum_probs=69.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCCCC-----CC-ccCc---------cccCCC--CCCCCCCccc
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAPYE-----RP-ALSK---------AYLFPE--GTARLPGFHV 68 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~~~-----~~-~~~~---------~~~~~~--~~~~~~~~~~ 68 (434)
||+|||||++|+++|..|+++| ++ |+|+|+.+..... +. .++. +++... .......+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~---v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIK---IALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCce---EEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999999 87 9999998653211 00 0000 000000 0000000000
Q ss_pred c---------c-----CCCC----------CCCChhhHhh-cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEe
Q 013914 69 C---------V-----GSGG----------ERLLPEWYKE-KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIA 121 (434)
Q Consensus 69 ~---------~-----~~~~----------~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlA 121 (434)
. . +... ...+.+.+.. .|++++.++.++++..+.. ++.+.++.++.+|.+|.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 0 0 0000 0011112233 3899999999999876554 355667778999999999
Q ss_pred cCCCcc
Q 013914 122 TGSTVL 127 (434)
Q Consensus 122 tG~~~~ 127 (434)
.|....
T Consensus 158 dG~~S~ 163 (382)
T TIGR01984 158 DGANSK 163 (382)
T ss_pred cCCChH
Confidence 997643
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-06 Score=82.85 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 45777888888888999999999999987645778887764 3564 578999999998
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.4e-06 Score=83.79 Aligned_cols=101 Identities=22% Similarity=0.361 Sum_probs=72.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC------Ccc----CC--HHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM------PRL----FT--ADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~------~~~----~~--~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
++++|||+|+.|+.+|..|++.+ .+|+++++.+.+. +.. ++ .++.....+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 37999999999999999999875 4899999887631 110 11 1223334566788999999999999
Q ss_pred EEEecCCCcEEEEEe-CCCcEEE--CCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKL-KDGRTLE--ADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~-~~g~~~~--~D~vi~a~G~~p~~~ 266 (434)
+++. +++...+.. .++++++ +|.+|+|||.+|+..
T Consensus 81 ~id~--~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDA--KNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEC--CCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 9986 333333332 2355666 999999999988654
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.1e-07 Score=85.40 Aligned_cols=123 Identities=19% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCC---CCc-c---------CccccCCCCCCCCCCc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYE---RPA-L---------SKAYLFPEGTARLPGF 66 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~---~~~-~---------~~~~~~~~~~~~~~~~ 66 (434)
|..+.+||+||||||+|+++|..|++.|. +..+|+|+|+.+..... +.. + .-+.+.. ....+...
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~-~~~~~~~~ 85 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA-DATPIEHI 85 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh-cCCcccEE
Confidence 44567899999999999999999999873 21239999997532110 000 0 0000000 00000000
Q ss_pred ccc--------------cCC----------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEE--EccCC---cEEEcce
Q 013914 67 HVC--------------VGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTL--LSATG---LIFKYQI 117 (434)
Q Consensus 67 ~~~--------------~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~ 117 (434)
... ... .....+.+.+...++++..++.++.+..+...+ .+.++ +++++|.
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~l 165 (398)
T PRK06996 86 HVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARI 165 (398)
T ss_pred EEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeE
Confidence 000 000 001112233445688999999998886665543 44433 5799999
Q ss_pred EEEecCC
Q 013914 118 LVIATGS 124 (434)
Q Consensus 118 lvlAtG~ 124 (434)
||-|.|.
T Consensus 166 vIgADG~ 172 (398)
T PRK06996 166 AVQAEGG 172 (398)
T ss_pred EEECCCC
Confidence 9999995
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-07 Score=76.47 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+||||||+||+||++|++.|++ |++||++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~k---V~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLK---VAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCe---EEEEecCCC
Confidence 58999999999999999999999998 999999864
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.8e-06 Score=82.76 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+.+++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 45677788888888999999999999988744577888764 3564 6789999999993
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-06 Score=80.12 Aligned_cols=36 Identities=33% Similarity=0.437 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|++||+.|++. |++ |+|||++...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~k---V~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVK---VAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCe---EEEEecCccc
Confidence 58999999999999999999986 665 9999998653
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.7e-06 Score=80.44 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g~--~~~~D~vi~a~G~~p 263 (434)
...+.+.+.+.+. ..|++++++++|..+...+++.. .+. +.+++ ++++|.||+|.|...
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcch
Confidence 3456677777775 45999999999999987423332 333 34453 689999999999654
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.8e-06 Score=84.80 Aligned_cols=99 Identities=16% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..+++.|.+ |+++++.+.... ... +.+ .....+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~ll~------------~~d---~e~--------~~~l~~~L~~ 223 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTK---VTIVEMAPQLLP------------GED---EDI--------AHILREKLEN 223 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcCc------------ccc---HHH--------HHHHHHHHHH
Confidence 36899999999999999999998876 999998754210 000 000 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEcc-CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSA-TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+. ++ .++.+|.+++|+|.+|+..
T Consensus 224 ~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 224 DGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCC
Confidence 899999999999998766554442 33 3689999999999998754
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-05 Score=65.08 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=105.0
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------C------------------------------
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------F------------------------------ 203 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~------------------------------ 203 (434)
++....|+|+|+|++|+.+|..|++.|.+|.++++.-.+...+ |
T Consensus 27 ~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ 106 (262)
T COG1635 27 DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVA 106 (262)
T ss_pred hhhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEe
Confidence 3345789999999999999999999999999999875543221 1
Q ss_pred -CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----------CCcEEECCEEEEcccCccChh-hh-h
Q 013914 204 -TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----------DGRTLEADIVVVGVGGRPLIS-LF-K 269 (434)
Q Consensus 204 -~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~~~~D~vi~a~G~~p~~~-~~-~ 269 (434)
..++...+....-+.|.+++....|+.+...++.++.++.++ |--.++++.||-|||.....- ++ +
T Consensus 107 ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~k 186 (262)
T COG1635 107 DSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAK 186 (262)
T ss_pred cHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHH
Confidence 112344444455567899999999999876344367776653 224788999999999765432 22 1
Q ss_pred cc----ccc-cCCc--------EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 270 GQ----VAE-NKGG--------IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 270 ~~----~~~-~~g~--------i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.. ... ..+. ..|+.+.+ -+||+|++|=++.-.. |.++--+...-=...|+.||+.++..
T Consensus 187 r~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~av~---G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 187 RIPELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVNAVH---GLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred hccccccccCCCcchhhhHHHHHHHhcccc-ccCCeEeehhhHHhhc---CCcccCchhhhhhhchHHHHHHHHHH
Confidence 11 111 1111 22333333 3899999996554221 11111122222235788888777654
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=87.47 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||||.||++||..+++.|. ..+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 36899999999999999999998752 123999999865
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=84.42 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=35.0
Q ss_pred CcEEEcCCeeEEEECC---------CCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 86 GIELILSTEIVRADIA---------SKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~---------~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
+++++.++++.+++.. .-++.+.+|+++++|.||.|.|.......
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 187 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRK 187 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHH
Confidence 4899999999998642 22566778889999999999998654443
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=70.60 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
....-..+++++...-+-++.+++.|..+..-++| ..+.-.+|++..+|.||+|+--.....++
T Consensus 215 V~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdG--v~l~~~~G~s~rFD~vViAth~dqAl~mL 278 (447)
T COG2907 215 VAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDG--VVLVNADGESRRFDAVVIATHPDQALALL 278 (447)
T ss_pred cccchHHHHHHHhccccceeecCCceeeeeeCCCc--eEEecCCCCccccceeeeecChHHHHHhc
Confidence 34455667777666666679999999999987888 45666789888999999998854333333
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-06 Score=82.32 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=74.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... . .. ++.. ......+.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~---Vtlv~~~~~~l-~------~~--------~~~~-------~~~~l~~~l~~ 195 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKA---VTLVDNAASLL-A------SL--------MPPE-------VSSRLQHRLTE 195 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCccc-c------hh--------CCHH-------HHHHHHHHHHh
Confidence 46899999999999999999998876 99999875421 0 00 0000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.++..+.. .+.+.++.++.+|.+|+|+|..|+.
T Consensus 196 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 196 MGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 8999999999999987654 3566788899999999999998863
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=86.99 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||...+||||||+|.||++||..+++. .+ |+|+||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~---VilleK~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-AR---TAVLTKLYP 38 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CC---EEEEeCCCC
Confidence 777779999999999999999999975 55 999999754
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=77.49 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEeCCC---cEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKLKDG---RTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~--~g--~v~~v~~~~g---~~~~~D~vi~a~G~ 261 (434)
..-+.+.+.+.+++.|++++++++|++|..++ ++ ++.++.+.+| +++.+|.||+|++.
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 44456778888999999999999999998643 23 2666667554 46899999999994
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-05 Score=77.12 Aligned_cols=58 Identities=29% Similarity=0.473 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCC--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDG--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g--~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++++++|++++..+++.+ .+. +.+| .++.+|.||+|+|..
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcc
Confidence 467788888888999999999999999987434332 233 2334 268999999999954
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.7e-06 Score=82.16 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+..++.||+++.++.+.++..+++|++.++.. .+|+ .+.++.||+|||-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 45677777777788899999999999998755788888764 3564 5779999999993
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.3e-06 Score=82.46 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+||||||||++||..|++.|++ |+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~---V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQ---TFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCc---EEEEecCCC
Confidence 5899999999999999999999997 999999753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-05 Score=79.66 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+.+.+.+...+.|++++.++.+.++..+++|++.++.. .+|+ .+.++.||+|+|-
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45677777777888999999999999988645677877765 3453 5789999999994
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.4e-05 Score=73.27 Aligned_cols=100 Identities=13% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CC----ccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MP----RLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~---~~--------~~----~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
..++++|||+|+.|+.+|..+.+.|.++++++... .+ ++ ....+.+.+.+.+..+..++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 46799999999999999999999999998886321 10 01 1123455777788888888888776
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.+..++.. ++ ...+..+++ ++.+|.||+|+|..|+.
T Consensus 84 ~v~~v~~~-~~-~~~v~~~~~-~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NR-PFRLTGDSG-EYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CC-eEEEEecCC-EEEECEEEECCCCCCCC
Confidence 46677652 22 234444444 78999999999998764
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.3e-06 Score=76.47 Aligned_cols=95 Identities=25% Similarity=0.300 Sum_probs=69.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEc-cCCccCCc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVY-PEPWCMPR------------------------------------------ 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~-~~~~~~~~------------------------------------------ 201 (434)
.|+|||+|..|+|+|..+++.|.+|.++. ..+.+..-
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 37999999999999999999999999993 32222100
Q ss_pred ----------cCCH-HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 202 ----------LFTA-DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----------~~~~-~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..|. .+.+.+++.+++ .+++++ ..+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0111 235566667766 678887 457999987 578999999999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-06 Score=83.62 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +. ....+ .....+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~---Vtli~~~~~il---~~---------~~~~~-----------~~~l~~~l~~ 233 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVE---VTVVEAADRIL---PT---------EDAEL-----------SKEVARLLKK 233 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccC---Cc---------CCHHH-----------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875421 00 00000 1233456778
Q ss_pred cCcEEEcCCeeEEEEC--CCCE--EEccCC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADI--ASKT--LLSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~~--v~~~~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..++. +.+. +...++ .++.+|.+++|+|.+|+..
T Consensus 234 ~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 234 LGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred cCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCC
Confidence 8999999999999874 3333 223455 3699999999999998754
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-06 Score=83.57 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=73.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.. . +.. .....+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~---~~~--------~~~l~~~l~~ 225 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAE---VTIVEALPRIL---PGE---------D---KEI--------SKLAERALKK 225 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCcC---CcC---------C---HHH--------HHHHHHHHHH
Confidence 36899999999999999999998876 99999975421 000 0 000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCC---cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~---~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+.+ .+.++ +++.+|.+|+|+|.+|+..
T Consensus 226 ~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 226 RGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred cCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999999999998765443 33444 5799999999999998754
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=80.79 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=76.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..+++.|.+ |+|+|+.+... |.+... ........+++
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~---VTiie~~~~iL-------------------p~~D~e----i~~~~~~~l~~ 226 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSK---VTVVERGDRIL-------------------PGEDPE----ISKELTKQLEK 226 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-------------------CcCCHH----HHHHHHHHHHh
Confidence 46799999999999999999999987 99999987532 111100 01344556667
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCc--EEEcceEEEecCCCccccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGL--IFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~--~~~~d~lvlAtG~~~~~~~ 130 (434)
.++.++.++.+..+..... .+.++++. ++.+|++++|+|-+|+...
T Consensus 227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCC
Confidence 7899999999999877664 45566665 6889999999999998654
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=79.74 Aligned_cols=97 Identities=19% Similarity=0.302 Sum_probs=73.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCc-cC---------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPR-LF---------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~~~-~~---------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+++|||+|+.|+.+|..+.+. +.+|+++++.+.+.-. .+ ..++...+.+.+++.||+++.+ +|.++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 6899999987654211 11 1233344566778889999876 68888
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +++ .|.+.+|+++++|.+|+|||.+|+..
T Consensus 80 d~--~~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DP--DRR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ec--ccC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 76 332 57788898999999999999888654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6e-05 Score=72.68 Aligned_cols=97 Identities=22% Similarity=0.258 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------C-----------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F----------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----------------~----------------------- 203 (434)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+.... +
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 368999999999999999999999999999864431100 0
Q ss_pred ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
-..+.+++.+..++.|++++.++++..+..++++.+..+ ..++.++.++.||.|.|.
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGV 150 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCc
Confidence 113355677788899999999999999988555544333 334468899999999984
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.2e-06 Score=73.26 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||+|+||++||..|++.|.+ |+|+||..-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~---vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGRE---VTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcE---EEEEEcCCC
Confidence 4799999999999999999999987 999999865
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-06 Score=82.77 Aligned_cols=33 Identities=36% Similarity=0.535 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+||+|||||++|+++|..|++.|++ |+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~---v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIK---TTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCe---EEEecCCC
Confidence 6999999999999999999999987 99999863
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-05 Score=79.63 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
...+.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 56677788787888899999999999987644678877765 3564 578999999999
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=88.03 Aligned_cols=97 Identities=26% Similarity=0.425 Sum_probs=73.9
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccC------CccCC-----HHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 166 AVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCM------PRLFT-----ADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~------~~~~~-----~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
++|||+|+.|+.+|..+.+. +.+|+++++.+++. +.++. .++.....+.+++.||+++++++|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 58999999999999998775 46899999887642 11111 112222356678899999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +. ..|.+.+|+++.+|.+|+|||.+|+..
T Consensus 81 d~--~~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DT--DQ--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EC--CC--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 86 33 357788898999999999999988654
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=80.15 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcC----cEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKG----IKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~G----V~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
...+...+.+.+++.+ |+++.++.+.++..+++|++.++... +++ .+.++.||+|||-
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 4556666666665433 88999999988876557888888763 343 4789999999993
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=83.54 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-----~~~~D~vi~a~G~ 261 (434)
|..+.-.......++|-++...++|+++.. +++ +.+|+..|.. ++.++.||.|+|-
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGp 223 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGP 223 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCc
Confidence 556677777888999999999999999987 334 7888876542 5889999999994
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=82.35 Aligned_cols=98 Identities=19% Similarity=0.344 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++....+.. ...+ .....+.+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~---Vtlv~~~~~l~~~-------------~~~~-----------~~~l~~~l~~ 230 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSR---VTVLARSRVLSQE-------------DPAV-----------GEAIEAAFRR 230 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEECCCCCCCC-------------CHHH-----------HHHHHHHHHh
Confidence 46899999999999999999999876 9999875321100 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEc-cCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..++.+...+.+ .++.++.+|.+++|+|..|+..
T Consensus 231 ~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 231 EGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 89999999999999876654332 2344799999999999998754
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.4e-06 Score=78.43 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=73.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----cCCHHHHHHHHH-----------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAFYEG----------------------- 213 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----~~~~~~~~~~~~----------------------- 213 (434)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988643321 012222222221
Q ss_pred --------------------HHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 214 --------------------YYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 214 --------------------~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.|.+ .+++++.++++++++.++++ ..+.+++|+++.+|+||.|-|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 1111 13568999999999874333 56888999999999999999965544
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-06 Score=80.03 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
..++++|||+|+.|+.+|..|...+.+|+++++.+.+.-... ..++...+...++..+++++.+ +|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRA-VVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEE-EEEEE
Confidence 457899999999999999999777789999998876532111 1223334556677788888765 68899
Q ss_pred EecCCCcEEEEEe--------CCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKL--------KDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~--------~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+. +.+...+.. .+|.++++|.+|+|+|.+|+..
T Consensus 88 d~--~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF--EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec--CCCEEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 76 333222311 4567899999999999887643
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-05 Score=76.33 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~ 44 (434)
.++||+|||||++||+||++|.+. |.+ |+|+|+++..+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~---v~vlEa~~rvG 49 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVN---VLVTEARDRVG 49 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCC---EEEEecCCCCC
Confidence 357999999999999999999998 886 99999997643
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-06 Score=74.49 Aligned_cols=103 Identities=21% Similarity=0.338 Sum_probs=72.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--ccCCH-----------HHH--H--HHHHHHHhcCcEEEcCCe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RLFTA-----------DIA--A--FYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--~~~~~-----------~~~--~--~~~~~l~~~GV~~~~~~~ 227 (434)
+++|||+|+.|+.+|..|.+.+.+++++++.+.... ..+.. ... + .+.+.++..+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653210 00000 011 1 334445778999999999
Q ss_pred EEEEEecCCCc-------EEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 228 AVGFTTNADGE-------VKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 228 v~~i~~~~~g~-------v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
+.+++.. .+. .......++.++.+|.+|+|+|..|+...+
T Consensus 81 v~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 81 VVSIDPE-SKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp EEEEEES-TTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred ccccccc-ccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 9999873 331 112234556789999999999988775533
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=78.55 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=79.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCcc----------CCHHHHHHHHHHHHhcC-cEEEcCCeEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRL----------FTADIAAFYEGYYANKG-IKIIKGTVAV 229 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~~----------~~~~~~~~~~~~l~~~G-V~~~~~~~v~ 229 (434)
.++++|+|+|+.|+.++..|.+.- .+|+++++.+..+-.. -..++...+.+.+++.+ |+++.++ |+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~-V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGE-VT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEE-EE
Confidence 579999999999999999999874 8899999988764221 12345566778888666 9988775 88
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
+|+. +. ..|.++++.++++|.+|+|+|..++..-
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~fg 115 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYFG 115 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcCC
Confidence 8876 44 3678888778999999999999887753
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-06 Score=81.61 Aligned_cols=33 Identities=21% Similarity=0.429 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIE---VVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCc---EEEEEcCCc
Confidence 899999999999999999999987 999999864
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.5e-06 Score=85.60 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~---V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLR---VAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCC---EEEEeccCC
Confidence 58999999999999999999999887 999999864
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=60.45 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.6
Q ss_pred EECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 10 ILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 10 IIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
|||||++||++|..|++.|.+ |+|+|+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~---v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYR---VTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSE---EEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCc---EEEEecCccc
Confidence 899999999999999999876 9999999764
|
... |
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-06 Score=82.08 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-+|..|++.|.+ |+++++.+... +. + ...+ .....+.+++.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~---~~-----~----d~~~-----------~~~l~~~l~~~ 202 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLH---PTLIHRSDKIN---KL-----M----DADM-----------NQPILDELDKR 202 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc---EEEEecccccc---hh-----c----CHHH-----------HHHHHHHHHhc
Confidence 6899999999999999999998876 99999875421 00 0 0000 12345667788
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
|++++.++.+.+++. ..+.+.+++++.+|.+++|+|.+|+..
T Consensus 203 gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 203 EIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred CCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcChH
Confidence 999999999999864 467777788899999999999998653
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=6e-06 Score=80.86 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + .....+ .....+ +.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~ll---~---------~~d~~~-----------~~~l~~-l~~ 218 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVR---VTVVNRSGRLL---R---------HLDDDI-----------SERFTE-LAS 218 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---c---------ccCHHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999975421 0 000000 011122 234
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+++++.++.+.+++.+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 6799999999999986654 35556777899999999999998754
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.2e-06 Score=81.52 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + .. . ......+.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~-----~----~~---~--------~~~~l~~~L~~ 220 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSE---THLFVRGDAPL---RG-----F----DP---D--------IRETLVEEMEK 220 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCCc---cc-----c----CH---H--------HHHHHHHHHHH
Confidence 46899999999999999999998876 99999875321 00 0 00 0 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 221 ~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 221 KGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred CCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 8999999999999976432 35566788899999999999998754
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.6e-06 Score=80.98 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~---v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCC---EEEEECCCC
Confidence 47999999999999999999999998 999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=85.36 Aligned_cols=100 Identities=25% Similarity=0.504 Sum_probs=75.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC----CCeEEEEccCCccC------CccC----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN----NIDVSMVYPEPWCM------PRLF----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~----g~~v~lv~~~~~~~------~~~~----~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +.++ ..++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999764 47999998887642 1111 1222223355678899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.+++. +. ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99976 33 356778898999999999999988654
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=81.23 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..+++.|.+ |+++++.+..... + ...+ .....+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~~--------~----d~~~-----------~~~l~~~l~~ 219 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQ---VTLIYRGELILRG--------F----DDDM-----------RALLARNMEG 219 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEeCCCCCcc--------c----CHHH-----------HHHHHHHHHH
Confidence 46799999999999999999998876 9999987542100 0 0000 1234456778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.... .+.+.++.++.+|.+++|+|..|+..
T Consensus 220 ~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 220 RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 8999999999999875433 45556777899999999999988753
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.9e-06 Score=80.57 Aligned_cols=99 Identities=21% Similarity=0.224 Sum_probs=74.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +. + ... ....+.+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----d~~-----------~~~~l~~~l~~ 228 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVK---VTLINTRDRLL---SF-----L----DDE-----------ISDALSYHLRD 228 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEecCCCcC---Cc-----C----CHH-----------HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875421 00 0 000 01234556677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+.. .+.+.++.++.+|.+++|+|.+|+..
T Consensus 229 ~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 229 SGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred cCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 8999999999999875444 34456777899999999999998754
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=80.15 Aligned_cols=34 Identities=35% Similarity=0.352 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~---V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWA---VTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEecCCc
Confidence 6899999999999999999999987 999999865
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.1e-06 Score=81.36 Aligned_cols=99 Identities=19% Similarity=0.264 Sum_probs=72.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + .... .+ .....+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~---------~~d~---~~--------~~~l~~~l~~ 219 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSE---VTILQRSDRLL---P---------REEP---EI--------SAAVEEALAE 219 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCcCC---C---------ccCH---HH--------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875421 0 0000 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEcc---CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSA---TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+.. .+.+. ++.++.+|.+++|+|.+|+..
T Consensus 220 ~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 220 EGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred cCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 8999999988999876543 23332 235799999999999998765
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-05 Score=72.35 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=73.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------- 201 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999987542110
Q ss_pred ------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEEEcccCcc
Q 013914 202 ------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 ------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi~a~G~~p 263 (434)
.....+.+.+.+.+++.|++++.+++++++..++++ ..+.+.+ +.++++|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR--VVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE--EEEEEcCccEEEEeCEEEECCCcch
Confidence 012245667777888899999999999998763333 2344443 45799999999999754
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-05 Score=57.56 Aligned_cols=79 Identities=20% Similarity=0.430 Sum_probs=63.1
Q ss_pred eeEEeccCceeEEeecCC--CCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhh
Q 013914 346 YFYSRAFDLSWQFYGDNV--GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 423 (434)
Q Consensus 346 ~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~l 423 (434)
+|||.+++..++.+|... .+.+..++.. ...|..+++++|+++|+..++ .+.++..+..+|+.+..+ +.+.|
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~----~~~~~~~y~~~g~lva~~~vn-~~~~~~~~rrli~~~~~~-~~~~l 74 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPE----SGKFVAFYLRDGRLVAAVSVN-RPRDLRAARRLIAAGARV-DPARL 74 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETT----TTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHH
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCC----CCcEEEEEEcCCEEEEEEecC-CHHHHHHHHHHHHCCCCc-CHHHh
Confidence 689999999999999765 3456666644 578898999999999999997 578899999999999988 68899
Q ss_pred hccCCCc
Q 013914 424 KNEGLSF 430 (434)
Q Consensus 424 ~~~~~~~ 430 (434)
.++.++.
T Consensus 75 ~d~~~~L 81 (85)
T PF14759_consen 75 ADPSVDL 81 (85)
T ss_dssp HSTTSHH
T ss_pred cCCCCCh
Confidence 9998765
|
... |
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=87.60 Aligned_cols=93 Identities=19% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+.. . -++.++.+...+.+++.||+|++++.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG---- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG---- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence 479999999999999999999999999999998765422 1 1467777777888999999999887541
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc-cC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~-p~ 264 (434)
..+++++.....+|.|++|+|.. |.
T Consensus 381 ------~dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 381 ------KTATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ------cEEeHHHhccccCCEEEEeCCCCCCC
Confidence 13445555456799999999974 54
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-06 Score=78.83 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+... .++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 4689999999999999999999999999999988765421 12333344445566777999999988765532
Q ss_pred --cCCCcEEEEEe--CCCcEEECCEEEEcccCc
Q 013914 234 --NADGEVKEVKL--KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 --~~~g~v~~v~~--~~g~~~~~D~vi~a~G~~ 262 (434)
..++....... .++..+.+|.+|+|+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 01111111111 112247899999999973
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-05 Score=79.16 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC--CC--cEEEEEe---CCCcEEECCEEEEcccCc
Q 013914 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA--DG--EVKEVKL---KDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~--~g--~v~~v~~---~~g~~~~~D~vi~a~G~~ 262 (434)
+...+.+.+.+.++++|++++++++|.+|..+. ++ ++.++.+ .+++++.+|.||+|++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 455688899999999999999999999998742 23 3677777 334568999999999953
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.4e-06 Score=79.38 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
++||+|||||++|+++|..|++.|++ |+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~---v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGID---SVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCC---EEEEEcCCc
Confidence 57999999999999999999999987 999999864
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.7e-06 Score=82.85 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~ 42 (434)
++++||+||||||+||++|..|++. |.+ |+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~---v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDIT---TRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCc---EEEEEcCCC
Confidence 4578999999999999999999995 887 999999864
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=82.40 Aligned_cols=35 Identities=17% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|.||++||..+++.|.+ |+||||...
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~---VilieK~~~ 69 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYN---VKVFCYQDS 69 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCc---EEEEecCCC
Confidence 57999999999999999999999887 999998643
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00014 Score=67.21 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=101.7
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCcc--------------------------CC----
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL--------------------------FT---- 204 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~~--------------------------~~---- 204 (434)
+.+.....-.++|||+|..|+-+|..+++. |.+|+++++...+.... ++
T Consensus 85 ~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dg 164 (357)
T PLN02661 85 TDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQEN 164 (357)
T ss_pred hhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCC
Confidence 333333456899999999999999999976 89999999865431100 01
Q ss_pred -------HHHHHHHH-HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C--C------cEEECCEEEEcccCc
Q 013914 205 -------ADIAAFYE-GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D--G------RTLEADIVVVGVGGR 262 (434)
Q Consensus 205 -------~~~~~~~~-~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~~~~D~vi~a~G~~ 262 (434)
.++.+.+. +.+++.||+++.++.+.++.. +++++.++.+. + + ..+.++.||+|||..
T Consensus 165 y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~ 243 (357)
T PLN02661 165 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD 243 (357)
T ss_pred eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence 11112233 344457899999999999876 45677777631 1 1 268999999999965
Q ss_pred cChh-h-hhc----cccc---cCCcE--------EeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHH
Q 013914 263 PLIS-L-FKG----QVAE---NKGGI--------ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQA 325 (434)
Q Consensus 263 p~~~-~-~~~----~~~~---~~g~i--------~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~a 325 (434)
+..- . +.. +... ..... .|+.+-+ -+|++|++|=.+.-.. |.++=-+....=...|+.|
T Consensus 244 g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~e-v~pgl~~~gm~~~~~~---g~~rmgp~fg~m~~sg~k~ 319 (357)
T PLN02661 244 GPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTRE-VVPGMIVTGMEVAEID---GSPRMGPTFGAMMISGQKA 319 (357)
T ss_pred CcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCc-ccCCEEEeccchhhhc---CCCccCchhHhHHhhhHHH
Confidence 4321 1 110 1000 00111 1222222 3899999996554221 1111112222234678888
Q ss_pred HHHHhccC
Q 013914 326 VKTIMATE 333 (434)
Q Consensus 326 a~~i~~~~ 333 (434)
|+-++..+
T Consensus 320 a~~~~~~l 327 (357)
T PLN02661 320 AHLALKAL 327 (357)
T ss_pred HHHHHHHH
Confidence 88887665
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.19 E-value=2e-05 Score=76.57 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-Ccc----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PRL---------------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-~~~---------------------------------------- 202 (434)
-.++|||+|+.|+.+|..|++.|.+|.++++.+... +..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999998864321 100
Q ss_pred ---CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 203 ---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 203 ---~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...++.+.+.+.+.+.|++++ ..+|++++..+++ ..|++++|+++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 011233455566677899997 4688999874333 5788899989999999999997653
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.6e-06 Score=80.16 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
||||||+|.||++||.+++++| .+ |+||||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~---V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAAN---VVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCcc---EEEEecCCC
Confidence 7999999999999999999998 76 999999875
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=84.29 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=68.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------cc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------RL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .+ ++.+....-.+.+++.||++++++.+ .+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~l 616 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLTV 616 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEEh
Confidence 467999999999999999999999999999998765422 11 34455566667788899999999876 2222
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.+.+...+|.||+|||..+.
T Consensus 617 -----------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 617 -----------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhheeccCCEEEECcCCCCC
Confidence 22234568999999998753
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.8e-06 Score=81.01 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+|+++.+... + .....+ .....+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~---------~~d~~~-----------~~~l~~~l~~ 225 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVD---VTIVEFLDRAL---P---------NEDAEV-----------SKEIAKQYKK 225 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEecCCCcC---C---------ccCHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875321 0 000000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc--CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+... +.+. ++ .++++|.+++|+|.+|+..
T Consensus 226 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 226 LGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred CCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 89999999999999765543 3332 45 3699999999999998754
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.9e-06 Score=80.94 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.... .... .. .....+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~---Vtli~~~~~~l~------------~~~~---~~--------~~~l~~~l~~ 224 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSE---VTVIERGPRLLP------------REDE---DV--------AAAVREILER 224 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCCCCc------------ccCH---HH--------HHHHHHHHHh
Confidence 36899999999999999999999876 999999754210 0000 00 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEc---cCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLS---ATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.++.. +.+ .++.++.+|.+|+|+|.+|+..
T Consensus 225 ~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 225 EGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 89999999999999865442 333 2335799999999999998754
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-05 Score=77.29 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+|+|||||++||++|..|+++| .+ |+|+|+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~---v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLN---VQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCC---EEEEecCCc
Confidence 7999999999999999999987 46 999999865
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.2e-06 Score=81.09 Aligned_cols=90 Identities=22% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+++|..|.+.|.+|+++++.+.+. +. ..+.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 46899999999999999999999999999999887652 11 13667778888889999999999986521
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+.+.+. .+.+|.||+|||..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222233 36799999999975
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.6e-06 Score=79.78 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+++++.+... . . + ...+ .....+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~il-~--~-----~----d~~~-----------~~~~~~~l~~ 219 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSE---THLVIRHERVL-R--S-----F----DSMI-----------SETITEEYEK 219 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCCC-c--c-----c----CHHH-----------HHHHHHHHHH
Confidence 36899999999999999999999876 99999875421 0 0 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCC-cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATG-LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~-~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+. ..+.+.++ ..+.+|.+++|+|.+|+..
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999999999987542 23555566 5799999999999998754
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.5e-05 Score=75.57 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc-EE-ECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR-TL-EADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~-~~-~~D~vi~a~G-~~p~~~~~~ 269 (434)
+..+...+.+.+++.|++++.++.++++..++++++.+|.. .+|+ ++ .++.||+|+| +.-|.++..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 56677778888899999999999999997655688888765 3443 23 4589999998 555555543
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.1e-05 Score=71.26 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+..||||||+|.+||++|+.|.+.|++ |+|+|.++..+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~---v~ilEar~r~G 43 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQ---VQILEARDRVG 43 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcE---EEEEeccCCcC
Confidence 568999999999999999999999998 99999998754
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=79.63 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+... +.. . +.+ .....+.+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~~---------d---~~~--------~~~~~~~l~~ 236 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAE---VTILEALPAFL---AAA---------D---EQV--------AKEAAKAFTK 236 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCccC---CcC---------C---HHH--------HHHHHHHHHH
Confidence 46899999999999999999998876 99999875421 000 0 000 1233456677
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccC--C--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+... +.+.+ + .++.+|.+++|+|.+|+..
T Consensus 237 ~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 237 QGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred cCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 89999999999999866543 33333 3 4699999999999998754
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-05 Score=77.89 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=75.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc--------C---Cc---cCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC--------M---PR---LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~--------~---~~---~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
-.++|||+|+.|+.+|..+++.|.+|+++++.+.- . +. ....++.+.+.+.+++.|++++ .+.|.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~ 83 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVL 83 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEE
Confidence 47999999999999999999999999999875310 0 10 0124667788888889999986 66788
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
.+.. ++....+.+.++ ++.+|.+|+|||.+|...
T Consensus 84 ~i~~--~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 84 DVDF--DGDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEe--cCCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 8876 334445666666 689999999999887653
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.9e-06 Score=81.77 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC-Cc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD-GR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.||+++.++.+.++.. +++++.+|...+ |+ ++.+ +.||+|+| +..|.++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 567788888999999999999999999876 367888876644 33 4676 68999999 555555553
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-06 Score=82.87 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.++++|++++.+++|.++..++ ++.+..+.. .+++ ++.+|.||+|+|.-
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw 295 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF 295 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh
Confidence 56778888888999999999999999998643 466666654 2343 57999999999943
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=79.08 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|..|+.+|..|++.|.+ |+++++.+...-. . .... .....+.+++.
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~---Vtli~~~~~~l~~-----------~-d~~~-----------~~~l~~~L~~~ 231 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVK---VTLVSSRDRVLPG-----------E-DADA-----------AEVLEEVFARR 231 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCcCCCC-----------C-CHHH-----------HHHHHHHHHHC
Confidence 5899999999999999999998876 9999987542100 0 0000 12345667788
Q ss_pred CcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 86 GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
|++++.++.+.+++.+.. .+.+.+++++.+|.+++|+|.+|+..
T Consensus 232 gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 232 GMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred CcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 999999999999865443 34556778899999999999998764
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=67.65 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCc---------------cCCccCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013914 164 GKAVVVGGGYIGLELSAALKINNID-VSMVYPEPW---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~---------------~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~ 227 (434)
-.++|||+|+.|+-+|-.+.+.+.+ +.+++.... +......+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 3689999999999999999999988 444443211 111124567888888888889999987 56
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 228 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 228 v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
+.+++...+ ...|++.+++ ++++.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777776222 5688889986 9999999999976543
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=79.06 Aligned_cols=99 Identities=14% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..+++.|.+ |+++|+.+... +.+.. .......+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~---Vtlie~~~~il-------------------~~~d~----~~~~~l~~~l~~ 227 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQ---VTVVEYLDRIC-------------------PGTDT----ETAKTLQKALTK 227 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEeCCCCCC-------------------CCCCH----HHHHHHHHHHHh
Confidence 47899999999999999999999876 99999875421 00000 001234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc---C--CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA---T--GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~---~--~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+... +.+. + +.++.+|.+++|+|.+|+..
T Consensus 228 ~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 228 QGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred cCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 89999999999999765433 2222 2 34799999999999998653
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.6e-06 Score=78.87 Aligned_cols=118 Identities=22% Similarity=0.314 Sum_probs=69.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-CCCCCc-----cCccccCCCCCCCC----------CC-
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-PYERPA-----LSKAYLFPEGTARL----------PG- 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~~~~~~-----~~~~~~~~~~~~~~----------~~- 65 (434)
++.|||+|||||.||..||...+|.|.+ +.|+.-+... +...|. +.|+.+..+ ...+ .+
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~k---tlLlT~~~dtig~msCNPaIGG~~KG~lvrE-IDALGG~Mg~~~D~~~I 77 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAK---TLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-IDALGGLMGKAADKAGI 77 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCe---EEEEEcCCCceeecccccccCCcccceeEEe-ehhccchHHHhhhhcCC
Confidence 4569999999999999999999999988 7777766431 111111 122222111 0000 00
Q ss_pred -ccc---ccCCC--------CCCCChhhHh-----hcCcEEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecCC
Q 013914 66 -FHV---CVGSG--------GERLLPEWYK-----EKGIELILSTEIVRADIASK----TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 66 -~~~---~~~~~--------~~~~~~~~~~-----~~~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG~ 124 (434)
|.. ..|+. +...+..+++ ..+++++.+ .|..+..++. .|.+.+|..+.++.+||+||.
T Consensus 78 Q~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 78 QFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred chhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 000 00100 0011222222 257888887 6776665333 367789999999999999996
Q ss_pred C
Q 013914 125 T 125 (434)
Q Consensus 125 ~ 125 (434)
-
T Consensus 157 F 157 (621)
T COG0445 157 F 157 (621)
T ss_pred c
Confidence 4
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.2e-05 Score=74.95 Aligned_cols=100 Identities=33% Similarity=0.560 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---Ccc--CC----------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---PRL--FT---------------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~---~~~--~~---------------------------------- 204 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+... ++. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 479999999999999999999999999999764311 000 00
Q ss_pred ----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ----------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++.|+++++++++++++.++++ ..+++.+|+++.+|.||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 122345556677789999999999999874443 45677788889999999999987654
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-05 Score=75.17 Aligned_cols=137 Identities=24% Similarity=0.288 Sum_probs=87.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------C----------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------F---------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------~---------- 203 (434)
|+|+|||+|++|+-.+..|.+.|.+++++++.+.+..-. +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 699999999999999999999999999999875532110 0
Q ss_pred -CHHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCC---cEEEEEeCC-Cc--EEECCEEEEcccC--ccChhhh-hcc
Q 013914 204 -TADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADG---EVKEVKLKD-GR--TLEADIVVVGVGG--RPLISLF-KGQ 271 (434)
Q Consensus 204 -~~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g---~v~~v~~~~-g~--~~~~D~vi~a~G~--~p~~~~~-~~~ 271 (434)
..++.++++...+..++ .++++++|.+++..++. ....|++.+ |+ +..+|.|++|+|. .|+...- -.+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~G 161 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFPG 161 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----CT
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhhh
Confidence 14678899999998887 58899999999874432 234566644 42 3468999999994 5655431 112
Q ss_pred ccccCCcEEeCCCCCC----CCCcEEEeccccc
Q 013914 272 VAENKGGIETDDFFKT----SADDVYAVGDVAT 300 (434)
Q Consensus 272 ~~~~~g~i~vd~~~~t----~~~~iya~GD~~~ 300 (434)
++.-.|.+.=...++. ..++|-++|-..+
T Consensus 162 ~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 162 LEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp GGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 3222355554444443 4678888885443
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=98.09 E-value=8.4e-06 Score=79.77 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=69.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 35789999999999999999999999999999876541 11 14667777777888999999999975411
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~-~p~ 264 (434)
.+.+.+. ...+|.||+|+|. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1233333 3468999999997 554
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.5e-05 Score=78.94 Aligned_cols=99 Identities=17% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..+++.|.+ |+|+++.+... . . + ...+ .....+.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~~l-~------~-~----d~~~-----------~~~l~~~l~~ 256 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGAT---VDLFFRKELPL-R------G-F----DDEM-----------RAVVARNLEG 256 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEecCCcC-c------c-c----CHHH-----------HHHHHHHHHh
Confidence 36899999999999999999998876 99999875311 0 0 0 0000 1234456778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+.+ .+.+.+++++.+|.+++|+|.+|+..
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 8999999999999875433 35556677899999999999998754
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.08 E-value=2e-05 Score=77.96 Aligned_cols=33 Identities=27% Similarity=0.472 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|||+|||+|+||+.+|..+++.|.+ |+|+|++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~---v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAK---TLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCC---EEEEeccc
Confidence 6999999999999999999999987 99999874
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=77.96 Aligned_cols=97 Identities=26% Similarity=0.330 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|+.|+.+|..|+++|.+ |+++|+.+...-. ++. +.+ .....+.++..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~---v~l~e~~~~~~~~-------~~~-------~~~--------~~~~~~~l~~~ 191 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKK---VTLIEAADRLGGQ-------LLD-------PEV--------AEELAELLEKY 191 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcccccchh-------hhh-------HHH--------HHHHHHHHHHC
Confidence 6899999999999999999999987 9999998753210 000 010 13556778889
Q ss_pred CcEEEcCCeeEEEECCCCE-----EEccCCcEEEcceEEEecCCCcc
Q 013914 86 GIELILSTEIVRADIASKT-----LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~-----v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
|++++.+..+..++...+. +...++..+++|.+++++|.+|+
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 9999999999999987653 45667778999999999999985
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=98.07 E-value=2e-05 Score=77.22 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=70.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |++|++.+... +. + ...+ .....+ +.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~---Vtli~~~~~ll---~~-----~----d~~~-----------~~~l~~-~~~ 221 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTR---VTIVNRSTKLL---RH-----L----DEDI-----------SDRFTE-IAK 221 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCccc---cc-----c----CHHH-----------HHHHHH-HHh
Confidence 46899999999999999999998876 99999875421 00 0 0000 011122 224
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+++++.++.+..++.+... +.+.+++++.+|.+++|+|.+|+..
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 58999999999999865543 4455677899999999999998753
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.9e-06 Score=81.96 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCc--EEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~--~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|..++++.+..+.. .+|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 4577888888999999999999999999855554444443 3453 5889999999884
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.3e-05 Score=73.49 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCC-CcEEECCEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKD-GRTLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~g~v~~v~~~~-g~~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
...+.+.+.+.+++.|++++++++++++..++ ++++.++...+ +.++.++.||+|+| +..|.+++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHH
Confidence 45678888888999999999999999998743 56777666543 35789999999999 666666554
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=77.24 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... + ... +.+ .....+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~---------~~~---~~~--------~~~l~~~l~~ 211 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSK---VTILEAASLFL---P---------RED---RDI--------ADNIATILRD 211 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCC---C---------CcC---HHH--------HHHHHHHHHh
Confidence 46899999999999999999998876 99999875321 0 000 000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+...+.+. ++.++.+|.+++|+|.+|+..
T Consensus 212 ~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 212 QGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATA 257 (441)
T ss_pred CCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCC
Confidence 899999999999998765544332 223589999999999998753
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.3e-05 Score=77.71 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=72.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |++++++...+ .+ ...+ .....+.+++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~----~~---------d~~~-----------~~~l~~~l~~ 234 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFD---VTVAVRSIPLR----GF---------DRQC-----------SEKVVEYMKE 234 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCcccc----cC---------CHHH-----------HHHHHHHHHH
Confidence 35899999999999999999999876 99998642111 00 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..... .+.+.+++++.+|.+++|+|-+|+..
T Consensus 235 ~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 235 QGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred cCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 8999999988887765432 35556777899999999999998754
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.1e-05 Score=72.06 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--c---------------------------c-----------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--R---------------------------L----------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--~---------------------------~----------- 202 (434)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 34799999999999999999999999999987653210 0 0
Q ss_pred ------------CC-------HHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 203 ------------FT-------ADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ------------~~-------~~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+ .++.+.+.+.+. ..|++++++++++.++.++++.+..+++++|+++.+|+||-|.|..
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 00 122333444443 3579999999999998866666667888999999999999999976
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 165 S~v 167 (388)
T PRK07045 165 SMI 167 (388)
T ss_pred hHH
Confidence 543
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.1e-05 Score=74.45 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999976432100
Q ss_pred -c------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccCh
Q 013914 202 -L------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 202 -~------------~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~ 265 (434)
+ + ...+.+.+.+.+++.|++++.++++++++.++++....+...+| +++++|.||.|.|.+...
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 0 0 01344566667778899999999999998744442222333356 479999999999986644
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.1e-05 Score=79.63 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+|+++....+. . ...+ .....+.+++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtli~~~~~l~~------------~-d~~~-----------~~~l~~~l~~ 322 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSK---VTILARSTLFFR------------E-DPAI-----------GEAVTAAFRA 322 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCccccc------------c-CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 999997532110 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+...+ .+.+ .++.+|.+++|+|.+|+..
T Consensus 323 ~gI~i~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 323 EGIEVLEHTQASQVAHVDGEFVLTTGH-GELRADKLLVATGRAPNTR 368 (561)
T ss_pred CCCEEEcCCEEEEEEecCCEEEEEecC-CeEEeCEEEEccCCCcCCC
Confidence 899999999999887655443 3333 3699999999999998764
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=77.70 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
..+++|||||+.|+-.|..+... |.+ |+|+++.+.... .....+ .....+.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~---Vtli~~~~~il~------------~~d~~~-----------~~~l~~~ 240 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGK---VTLCYRNNMILR------------GFDSTL-----------RKELTKQ 240 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCe---EEEEecCCcccc------------ccCHHH-----------HHHHHHH
Confidence 46899999999999999776654 554 999998754210 000000 1234566
Q ss_pred HhhcCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEecCCCcccc
Q 013914 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
+++.|++++.++.+.++..+. ..+.+.++.++.+|.+++|+|.+|+..
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 778899999999999887542 245566777899999999999998754
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=70.23 Aligned_cols=137 Identities=27% Similarity=0.315 Sum_probs=93.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCc-----------------------cC--------CHHHHHH
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPR-----------------------LF--------TADIAAF 210 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~~~-----------------------~~--------~~~~~~~ 210 (434)
-..++|||+|++|+-+|..|.+.|.. +.++++.+.+... .+ -.++.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 35899999999999999999999988 9999887532110 01 0126778
Q ss_pred HHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccC--ccChhhhhccccccCCcE-EeCC
Q 013914 211 YEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGG--RPLISLFKGQVAENKGGI-ETDD 283 (434)
Q Consensus 211 ~~~~l~~~GV~--~~~~~~v~~i~~~~~g~v~~v~~~~g~~--~~~D~vi~a~G~--~p~~~~~~~~~~~~~g~i-~vd~ 283 (434)
+...+++.++. +.+++.|..+..++++....|++++|.+ +.+|.||+|||. .|+..-+.....+ .|.+ ...+
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f-~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEF-KGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCC-CceEEchhc
Confidence 88888888765 4556677777776677788899988866 459999999994 4444433222222 2322 2222
Q ss_pred ---CCCCCCCcEEEeccccc
Q 013914 284 ---FFKTSADDVYAVGDVAT 300 (434)
Q Consensus 284 ---~~~t~~~~iya~GD~~~ 300 (434)
..+..-++|-++|--++
T Consensus 167 ~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCCccccCCCeEEEECCCcc
Confidence 22335678888886554
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=78.25 Aligned_cols=93 Identities=23% Similarity=0.253 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Ccc-CCHH-HHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PRL-FTAD-IAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~~-~~~~-~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +.+ ++.+ +.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999765431 110 2233 666667788999999999985521
Q ss_pred ecCCCcEEEEEeCCC-cEEECCEEEEcccC-ccC
Q 013914 233 TNADGEVKEVKLKDG-RTLEADIVVVGVGG-RPL 264 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~-~p~ 264 (434)
.+.+++. +++.+|.|++|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1222232 24569999999997 454
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=77.58 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=70.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~-~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|++|+.+|..|++.|.+|+++++.+.+. + ..++.++.+...+.+++.|+++++++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 36789999999999999999999999999998876542 1 1146677777778899999999999866321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999998764
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.5e-05 Score=77.22 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++....+. + . +.. .....+.+++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~l~~---------~----d---~~~--------~~~l~~~L~~ 240 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSR---VTILARSTLLFR---------E----D---PLL--------GETLTACFEK 240 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEEcCCCCCc---------c----h---HHH--------HHHHHHHHHh
Confidence 36899999999999999999998876 999987532110 0 0 000 1234556778
Q ss_pred cCcEEEcCCeeEEEECCCCEE--EccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTL--LSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v--~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..+...+ ...+ .++.+|.+++|+|..|+..
T Consensus 241 ~GV~i~~~~~V~~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 241 EGIEVLNNTQASLVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCCEEEcCcEEEEEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCcc
Confidence 899999999998887554433 3333 4689999999999998754
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.5e-05 Score=72.01 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=74.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cCCcc--CC---------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CMPRL--FT--------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~----------~~~~~--~~--------------------------- 204 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+. ..++. +.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997651 00000 00
Q ss_pred -----------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 205 -----------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 205 -----------------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
..+.+.+.+.+++.|++++.++++.+++.++++ ..+++.+|+++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 012234445566779999999999999874444 4577889989999999
Q ss_pred EEcccCccCh
Q 013914 256 VVGVGGRPLI 265 (434)
Q Consensus 256 i~a~G~~p~~ 265 (434)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999975544
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.8e-06 Score=81.33 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCC--CCCcEEEEeCCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGV--KPGELAIISKEAVA 43 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~--~~~~V~vie~~~~~ 43 (434)
||++.+||+|||||++||+||..|++.|. +..+|+|+|+++..
T Consensus 1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 88888999999999999999999999871 11239999999864
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.5e-06 Score=81.39 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g----~~~~~D~vi~a~G~~ 262 (434)
+..+...+....+++|++++.+++|.++..+ +....+.+.++ .++.++.||.|+|.-
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECCCcc
Confidence 5666677777789999999999999999873 33345666554 258999999999953
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=71.15 Aligned_cols=99 Identities=30% Similarity=0.436 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCc-----------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
.|+|||+|+.|+-+|..|++.| .+|+++++.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6899999999999999999985 999999875321000
Q ss_pred ----------c---------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 202 ----------L---------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 202 ----------~---------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
. ....+.+.+.+.+++.|++++.++++++++.++++ ..+++.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence 0 01234556666777789999999999999863332 46778889899999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|.|.....
T Consensus 161 ~AdG~~S~v 169 (403)
T PRK07333 161 AADGARSKL 169 (403)
T ss_pred EcCCCChHH
Confidence 999976543
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.2e-05 Score=76.34 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=70.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+++++....+. . ...+ .....+.+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~---Vtli~~~~~l~~----~---------d~~~-----------~~~l~~~L~~ 232 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG----F---------DQDC-----------ANKVGEHMEE 232 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCc---EEEEEecccccc----c---------CHHH-----------HHHHHHHHHH
Confidence 35899999999999999999999876 999987421110 0 0000 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCC---cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~---~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+..... .+.+.++ .++.+|.+++|+|-+|+..
T Consensus 233 ~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 233 HGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred cCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 8999999988877765433 3444444 3799999999999988754
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.3e-05 Score=76.52 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccCC--------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMP--------R-LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~--~g~~v~lv~~~~~~~~--------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+.. . .....+...+.+.+++.+|+++.+..+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg- 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG- 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC-
Confidence 46899999999999999999987 7999999999886531 1 0123344566677888899998876541
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..+.+++. ...+|.||+|+|..+
T Consensus 104 ---------~dvtl~~L-~~~yDaVIlAtGa~~ 126 (491)
T PLN02852 104 ---------RDVSLSEL-RDLYHVVVLAYGAES 126 (491)
T ss_pred ---------ccccHHHH-hhhCCEEEEecCCCC
Confidence 12333333 236999999999765
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=70.85 Aligned_cols=101 Identities=27% Similarity=0.408 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc--------------------c--------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR--------------------L-------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~--------------------~-------------- 202 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 479999999999999999999999999998765310 00 0
Q ss_pred ---------CC---------------HHHHHHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 203 ---------FT---------------ADIAAFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 203 ---------~~---------------~~~~~~~~~~l-~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
++ ..+.+.+.+.+ +..|++++.++++++++.++++ ..+.+++|+++++|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 00 01122222333 3468999999999999863333 467888899999999999
Q ss_pred cccCccChh
Q 013914 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|......
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999866543
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.9e-05 Score=76.51 Aligned_cols=98 Identities=12% Similarity=0.221 Sum_probs=70.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... +. + ...+ .....+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~---Vtli~~~~~~l---~~-----~----d~~~-----------~~~~~~~l~~ 222 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVK---VTVFERGDRIL---PL-----E----DPEV-----------SKQAQKILSK 222 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---cc-----h----hHHH-----------HHHHHHHHhh
Confidence 46899999999999999999999876 99999875421 00 0 0000 1233455667
Q ss_pred cCcEEEcCCeeEEEECCCC-EEEc--cC--CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK-TLLS--AT--GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~--~~--~~~~~~d~lvlAtG~~~~~~ 129 (434)
. ++++.++.+.+++.+.+ .+.+ .+ +.++.+|.+++|+|.+|+..
T Consensus 223 ~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 223 E-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred c-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 7 99999999999876543 3432 22 34699999999999998765
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.6e-05 Score=73.30 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=79.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
...||++|+|..|+-+|..|.....+ |++|++++.+- ..++.+ .......+++++
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~---VT~V~~e~~~~-------~~lf~~---------------~i~~~~~~y~e~ 267 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKS---VTVVFPEPWLL-------PRLFGP---------------SIGQFYEDYYEN 267 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCce---EEEEccCccch-------hhhhhH---------------HHHHHHHHHHHh
Confidence 46799999999999999999998766 99999986421 111111 112456788889
Q ss_pred cCcEEEcCCeeEEEECCC--C--EEEccCCcEEEcceEEEecCCCccccc
Q 013914 85 KGIELILSTEIVRADIAS--K--TLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~--~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
.+++++.++.+.++.... + .|.+.++.++.+|-||+.+|++|+...
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~ 317 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSF 317 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccc
Confidence 999999999888887655 2 367789999999999999999998765
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=70.02 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=72.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCc--------cC--------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPR--------LF-------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~--------~~-------------------------------- 203 (434)
.|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.+. .+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3799999999999999999999 999999876432110 00
Q ss_pred -----------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 204 -----------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 204 -----------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
..++.+.+.+.+.+ .|++++.+++++++..++++ ..+++.+|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 01234444455555 49999999999999864443 45778888889999999999
Q ss_pred cCcc
Q 013914 260 GGRP 263 (434)
Q Consensus 260 G~~p 263 (434)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9654
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00014 Score=70.73 Aligned_cols=97 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------------cC--------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------------LF-------------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------------~~-------------------------- 203 (434)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999876432100 00
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 ---------------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ---------------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
...+.+.+.+.+++.|++++.+++|+++..+ ++.+..+. .+|.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0112344566677889999999999998763 45544444 566789999999999974
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=70.15 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--c--CCH-------------H--------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--L--FTA-------------D-------------------- 206 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--~--~~~-------------~-------------------- 206 (434)
++|+|||+|+.|+.+|..|++.|.+|+++++.+.+... . +.+ .
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999976443110 0 000 0
Q ss_pred ---------------------HHHHHHHHHH---hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 207 ---------------------IAAFYEGYYA---NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 207 ---------------------~~~~~~~~l~---~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
....+.+.|. ..|+++++++++++++.+++ ...+++++|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~--~v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD--SVRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC--eEEEEECCCCeEEeCEEEECCCCC
Confidence 0112222332 36899999999999976333 256889999999999999999966
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 544
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=76.45 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+..|..+++.|.+ |+++++.+... +. + ...+ .....+.+++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~---Vtli~~~~~il---~~-----~----d~~i-----------~~~l~~~L~~ 290 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAE---SYIFARGNRLL---RK-----F----DETI-----------INELENDMKK 290 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCc---EEEEEeccccc---cc-----C----CHHH-----------HHHHHHHHHH
Confidence 46899999999999999999999876 99999875311 00 0 0000 1234456777
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccC-CcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSAT-GLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~-~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.+..+.+++.+.. .+...+ ++++.+|.+++|+|.+|+..
T Consensus 291 ~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 291 NNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred CCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 8999999999998875432 233333 34799999999999888744
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.2e-05 Score=78.72 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=35.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+++++|||||||+|||+||+.|.+.|++ |+|+|..+..+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~---V~VLEARdRvG 51 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFD---VLVLEARDRVG 51 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCc---eEEEeccCCcC
Confidence 3468999999999999999999999998 99999998754
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=69.97 Aligned_cols=98 Identities=28% Similarity=0.395 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------------------c--cC-----------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------------R--LF----------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---------------------~--~~----------------- 203 (434)
..|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. . ..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999987754311 0 00
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 204 ------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 204 ------------------------~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
...+.+.+.+.+++.| ++++ +.+++++...+++ ..+++.+|+++.+|.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123445556667777 9998 8889998763333 4688888888999999999
Q ss_pred ccCccC
Q 013914 259 VGGRPL 264 (434)
Q Consensus 259 ~G~~p~ 264 (434)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 997654
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.3e-05 Score=76.30 Aligned_cols=89 Identities=24% Similarity=0.264 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++++|||+|+.|+.+|..|.+.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+.. ..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~-~~- 220 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV-DI- 220 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC-cc-
Confidence 4799999999999999999999999999999877642 11 13566776777888999999999987631 10
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 235 ADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
. .+.....+|.|++|+|..
T Consensus 221 --------~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 221 --------S-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------C-HHHHHhhCCEEEEccCCC
Confidence 0 011135699999999987
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=70.78 Aligned_cols=98 Identities=18% Similarity=0.221 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------------------ 202 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+....
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 68999999999999999999999999998765431100
Q ss_pred --CC-----------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 203 --FT-----------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --~~-----------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
++ .++.+.+.+.+ ..+++++++++|++++.++++ ..+++++|+++++|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG--VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe--EEEEECCCCEEEeCEEEECCCCCc
Confidence 00 01122222222 347999999999999874333 457889999999999999999755
Q ss_pred Ch
Q 013914 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
.+
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 44
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.9e-05 Score=81.04 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=70.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.||+++.++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46789999999999999999999999999999865431 11 13566667667788899999999875411
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 265 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~-~p~~ 265 (434)
.+++++.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233334345669999999997 4543
|
|
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00012 Score=71.30 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 187 ~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..-.+..+.+-.+. +..+.+.+....++.|..++.++.|+++... ++...+|++..| .+++..+|-|+|+-.
T Consensus 172 v~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 172 VYGGLYSPGDGVMD---PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred heeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCc-ceecceEEechhHHH
Confidence 34456666665543 5567889999999999999999999999874 444458999999 799999999999644
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=72.29 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=73.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 47999999999999999999999999999876332100
Q ss_pred ---------------------cCC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013914 202 ---------------------LFT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 202 ---------------------~~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~~~~~D~vi 256 (434)
.++ ..+.+.+.+.+++.|+++++++++++++.++++ ..+++ .+++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--VTARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--EEEEEEeCCCeEEEEeCEEE
Confidence 000 112345666677789999999999999875444 33444 556789999999
Q ss_pred EcccCcc
Q 013914 257 VGVGGRP 263 (434)
Q Consensus 257 ~a~G~~p 263 (434)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00026 Score=60.07 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CC-------------------------
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FT------------------------- 204 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~------------------------- 204 (434)
+.+.+.....++|||+|++|+-+|..|++.|.+|.++++...+.... |.
T Consensus 10 ~~l~~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g 89 (230)
T PF01946_consen 10 EDLYDYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDG 89 (230)
T ss_dssp HHHHHHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSE
T ss_pred HHHHhhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCe
Confidence 33433356789999999999999999999999999999875543221 10
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------C-----CcEEECCEEEEcccCccCh
Q 013914 205 ------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------D-----GRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~------~-----g~~~~~D~vi~a~G~~p~~ 265 (434)
.++...+....-+.|++++....|+.+...+++++.++... . --.+++..||-|||...+.
T Consensus 90 ~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 90 YYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp EEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 12334444445558999999999999866445788877663 2 2378999999999976544
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=71.51 Aligned_cols=98 Identities=20% Similarity=0.260 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~----------------------------------------- 202 (434)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+.+..
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998642221110
Q ss_pred -CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 203 -FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 -~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
-...+.+.+.+.+.+.|+++ .+++|+++...+++ ...+.+.+|.++.++.||.|+|...
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 00123355556667789998 57789998763333 3335667888999999999999765
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=77.85 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||||||+|.||++||.++++.|.+ |+|+||.+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~---VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQ---VILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEccCC
Confidence 358999999999999999999999987 999999865
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.4e-05 Score=75.00 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=65.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|+|+|.+|+++|..|.+.|.+|+++++.+ .+....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~--------~~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD--------DERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc--------hhhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 46899999999999999999999999999998653 2334455667888999998876432
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
....+|+||+++|..|+.+++
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~ 95 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLL 95 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHH
Confidence 024589999999999999865
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.4e-05 Score=79.32 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~--~~~~D~vi~a~G~~ 262 (434)
+..+...+...++++|++++.+++|.++..+ ++ ...+.+.+ |+ ++.++.||.|+|.-
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~w 215 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGPW 215 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCcc
Confidence 4556666777788999999999999999762 33 24555543 53 68999999999953
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-05 Score=79.50 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.+..+...+.+++.||+++++... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-d---- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP-D---- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc-c----
Confidence 47899999999999999999999999999998765321 1 124455555667778899999887421 1
Q ss_pred CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 235 ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 235 ~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+.+...+|.|++|+|..+.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11222234568999999997643
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=69.64 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=70.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----CCHHH---------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----FTADI--------------------------------- 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~----~~~~~--------------------------------- 207 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 68999999999999999999999999999875431100 00000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 208 ---------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 208 ---------------~~~~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
...+.+.|.+ .+.++++++++++++.++++ ..+++++|+++.+|+||-|-|....+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDK--VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCc--EEEEECCCCEEecCEEEECCCcchHHH
Confidence 1122223322 24578999999999863333 467888999999999999999765443
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=72.11 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC-ccC--C---c--------------cC--------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP-WCM--P---R--------------LF-------------------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~-~~~--~---~--------------~~-------------------- 203 (434)
-.|+|||+|+.|+++|..+++.|.+|.++++.. .+. + . .+
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 368999999999999999999999999998763 110 0 0 00
Q ss_pred -------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 -------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 -------------~~-~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
|. .+...+.+.+++. |++++ ...+.++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00 0123344445444 78875 456777765 467788899999999999999999993
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.6e-05 Score=74.06 Aligned_cols=98 Identities=11% Similarity=0.265 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+||++.+... + .....+ .....+.+++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~il---~---------~~d~~~-----------~~~~~~~l~~ 227 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSE---VDVVEMFDQVI---P---------AADKDI-----------VKVFTKRIKK 227 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC---EEEEecCCCCC---C---------cCCHHH-----------HHHHHHHHhh
Confidence 36899999999999999999999876 99999886421 0 000000 1123445555
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccC--C--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSAT--G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~--~--~~~~~d~lvlAtG~~~~~~ 129 (434)
. ++++.++.+..+...... +.+.+ + .++.+|.+++|+|.+|+..
T Consensus 228 ~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 228 Q-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred c-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 6 999999999988754443 33333 2 3699999999999998764
|
|
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.6e-05 Score=71.55 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
..++..+.+-+++.|-++.+.+.|++|.. ++|++.+|.++||+++.+..|+..++
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEecCCcEEEeeeeecCCc
Confidence 46788888999999999999999999988 45999999999999999988888666
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00027 Score=69.81 Aligned_cols=98 Identities=16% Similarity=0.295 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------cc-
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----------------------------------------~~- 202 (434)
..|+|||+|+.|+-+|..|++.|.+|.++++.+.... ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999987643110 00
Q ss_pred --------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 203 --------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 203 --------------------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
++ ..+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 112334455677889999999999999875444 3456677888999999999997
Q ss_pred cc
Q 013914 262 RP 263 (434)
Q Consensus 262 ~p 263 (434)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 54
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00026 Score=68.21 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------- 201 (434)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 3799999999999999999999999999976532100
Q ss_pred -cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 202 -LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 -~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
.-...+.+.+.+.+.+.|++++ ..++..+... ++....+++.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0002334555666677899886 5578888763 2334567888888999999999999766
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00019 Score=68.01 Aligned_cols=101 Identities=29% Similarity=0.382 Sum_probs=72.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------------ 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------------------ 202 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999999874321100
Q ss_pred --------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC
Q 013914 203 --------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD 253 (434)
Q Consensus 203 --------------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D 253 (434)
....+.+.+.+.+++.|+++++++++..+..+.++....+... +|+ ++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 0124566777788888999999999999987555433333333 343 68999
Q ss_pred EEEEcccCccCh
Q 013914 254 IVVVGVGGRPLI 265 (434)
Q Consensus 254 ~vi~a~G~~p~~ 265 (434)
+||-|-|....+
T Consensus 163 lvVgADG~~S~v 174 (356)
T PF01494_consen 163 LVVGADGAHSKV 174 (356)
T ss_dssp EEEE-SGTT-HH
T ss_pred eeecccCcccch
Confidence 999999976544
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00046 Score=66.56 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=92.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------------------cc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------------------RL 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----------------------------------------~~ 202 (434)
.++++|||+|++|+-.|..|.+.|.++++++|.+.+.. +.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCccc
Confidence 68999999999999999999999999999988754310 00
Q ss_pred -CC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEEEEcccCc--cChhhhhcc-
Q 013914 203 -FT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR--PLISLFKGQ- 271 (434)
Q Consensus 203 -~~-~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g----~~~~~D~vi~a~G~~--p~~~~~~~~- 271 (434)
.+ .++.++|...+++.++ .+.+++.+..+....+| ...|.+.+. ++..+|.|++|+|.- |+....+..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCc
Confidence 11 2567888888888886 57788888888763323 245555443 366799999999955 666554432
Q ss_pred ccc-cCCcEEeCCCCCC---CCCcEEEecccc
Q 013914 272 VAE-NKGGIETDDFFKT---SADDVYAVGDVA 299 (434)
Q Consensus 272 ~~~-~~g~i~vd~~~~t---~~~~iya~GD~~ 299 (434)
+.. ....+..-++-.. ....|.++|--.
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~ 196 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN 196 (448)
T ss_pred hhhcCCcceehhhccCcccccCceEEEECCCc
Confidence 222 3333444443322 457788888433
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=67.74 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--cC---C---c--cCCH----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM---P---R--LFTA---------------------------- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~--~~---~---~--~~~~---------------------------- 205 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+. +. + + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 3799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 206 ---------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 206 ---------------------------~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
.+...+.+.+++ .+++++.++++++++.++++ ..+++++|+++++|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 001112222333 47999999999999874444 468889999999999999
Q ss_pred cccCccChh
Q 013914 258 GVGGRPLIS 266 (434)
Q Consensus 258 a~G~~p~~~ 266 (434)
|.|......
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999876554
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.3e-05 Score=80.89 Aligned_cols=92 Identities=24% Similarity=0.228 Sum_probs=68.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . ..+.++.+...+.+++.||++++++.+. .
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg-~--- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG-K--- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC-C---
Confidence 57899999999999999999999999999998765421 1 1367788888888999999999997541 1
Q ss_pred CCCcEEEEEeCCC-cEEECCEEEEcccCc-cC
Q 013914 235 ADGEVKEVKLKDG-RTLEADIVVVGVGGR-PL 264 (434)
Q Consensus 235 ~~g~v~~v~~~~g-~~~~~D~vi~a~G~~-p~ 264 (434)
.+++.+- +...+|.||+|||.. |.
T Consensus 506 ------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 ------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred ------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 123589999999974 44
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-05 Score=77.49 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=69.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +..++.++.+...+.+++.||++++++.+..-
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 386 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD-- 386 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCc--
Confidence 36899999999999999999999999999999887642 11256777777778899999999999865210
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+.+.+. ...+|.|++|+|..+
T Consensus 387 --------~~~~~l-~~~~DaV~latGa~~ 407 (639)
T PRK12809 387 --------ITFSDL-TSEYDAVFIGVGTYG 407 (639)
T ss_pred --------CCHHHH-HhcCCEEEEeCCCCC
Confidence 111111 246899999999754
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=68.26 Aligned_cols=101 Identities=25% Similarity=0.393 Sum_probs=70.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC----Cc--cCC--------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM----PR--LFT-------------------------------- 204 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~----~~--~~~-------------------------------- 204 (434)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+. ++ .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3589999999999999999999999999998764321 00 000
Q ss_pred -----------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEE
Q 013914 205 -----------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVV 257 (434)
Q Consensus 205 -----------------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~ 257 (434)
..+.+.+.+.+.+ .+|++++++++++++.++++ ..+++.+ + .++++|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 1122333334444 37999999999999874443 3456653 2 3699999999
Q ss_pred cccCccCh
Q 013914 258 GVGGRPLI 265 (434)
Q Consensus 258 a~G~~p~~ 265 (434)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99976544
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00036 Score=67.46 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------cCCH----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTA---------------------------- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------~~~~---------------------------- 205 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999999999999999976531100 0000
Q ss_pred ----------------------------HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 206 ----------------------------DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 206 ----------------------------~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
.+.+.+.+.+++. ||++++++++.+++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 1123333444443 7999999999999774443 46778899999999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
-|-|.....
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999976544
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.6e-05 Score=74.06 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|.+.|.+|+++++.+.+... .++.++.....+.+++.||++++++.+.. ..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~~ 220 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-DI 220 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-cC
Confidence 3579999999999999999999999999999987665211 13556666667788999999999986531 10
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.. +.....+|.|++|+|..
T Consensus 221 ---------~~-~~~~~~~d~vvlAtGa~ 239 (471)
T PRK12810 221 ---------TA-EELLAEYDAVFLGTGAY 239 (471)
T ss_pred ---------CH-HHHHhhCCEEEEecCCC
Confidence 00 11124699999999986
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0004 Score=66.46 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----ccCC--c--cC---------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WCMP--R--LF--------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~----~~~~--~--~~--------------------------------- 203 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+ .+.+ + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 68999999999999999999999999999642 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 --------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 --------------------~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..++.+.+.+.+++.+ ++++.+++++++..++++ ..+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 0123444455555554 899999999999774444 45777776 89999999999976
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 554
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00046 Score=66.56 Aligned_cols=100 Identities=20% Similarity=0.325 Sum_probs=73.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------C--c---
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------P--R--- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------------------------------------~--~--- 201 (434)
-.|+|||+|+.|+-+|..|++.|.+|+++++.+... + .
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999998764100 0 0
Q ss_pred --c------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 202 --L------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 202 --~------~---------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
. + ...+.+.+.+.+++. |++++.+++++++...+++ ..+.+++|+++.+|+||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIG 163 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEE
Confidence 0 0 012233444455555 9999999999999763333 467788888999999999
Q ss_pred cccCccCh
Q 013914 258 GVGGRPLI 265 (434)
Q Consensus 258 a~G~~p~~ 265 (434)
|.|.....
T Consensus 164 AdG~~S~v 171 (391)
T PRK08020 164 ADGANSQV 171 (391)
T ss_pred eCCCCchh
Confidence 99976643
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00049 Score=67.00 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=71.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------Ccc-----------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL----------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------~~~----------------------- 202 (434)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. +..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999998764320 000
Q ss_pred ----C----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 203 ----F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 203 ----~----------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+ ...+.+.+.+.+++.|++++.+++|+.+.. +++.+..+.. ++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 011223456667788999999999999876 3455555554 44579999999999964
Q ss_pred c
Q 013914 263 P 263 (434)
Q Consensus 263 p 263 (434)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 3
|
|
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=65.60 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=52.8
Q ss_pred CCeEEEEccCCccCCccCCHHHHHHHHHHHHhc------CcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEE
Q 013914 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK------GIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIV 255 (434)
Q Consensus 186 g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~------GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~v 255 (434)
|+.|---+|....+|. .-++.+.+...+++. -+++.++++|+.|.. ++|++.+|+.-| | ..+.+|.|
T Consensus 122 GHSvpRTHr~s~plpp--gfei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~V 198 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPP--GFEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAV 198 (477)
T ss_pred CCCCCcccccCCCCCC--chHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCce
Confidence 5666556677777775 456666666666542 488999999999995 788888887643 4 35779999
Q ss_pred EEccc
Q 013914 256 VVGVG 260 (434)
Q Consensus 256 i~a~G 260 (434)
|+|+|
T Consensus 199 VlatG 203 (477)
T KOG2404|consen 199 VLATG 203 (477)
T ss_pred EEecC
Confidence 99998
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.5e-05 Score=66.66 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEe--CCCcEEECCEEEEcccCccC
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKL--KDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~--~~g~~~~~D~vi~a~G~~p~ 264 (434)
+...+-+.++..|-+++++-+++.+....++ --+-++. ..++++++..++-|+|....
T Consensus 198 v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd 258 (453)
T KOG2665|consen 198 VTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD 258 (453)
T ss_pred HHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh
Confidence 3444445588889999999999998764332 1122333 34578999999999997543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00045 Score=66.91 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC------Cc--cCCH----------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM------PR--LFTA---------------------------- 205 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~------~~--~~~~---------------------------- 205 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999975 1100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEE
Q 013914 206 ----------------------------DIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256 (434)
Q Consensus 206 ----------------------------~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi 256 (434)
.+.+.+.+.+.+ .||+++.+++++++..++++ ..+++++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 112233333444 47999999999999764333 56888899999999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
.|-|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999975443
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0005 Score=69.33 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------c------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~------ 202 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 358999999999999999999999999999876432100 0
Q ss_pred -------------------C-CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEccc
Q 013914 203 -------------------F-TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVG 260 (434)
Q Consensus 203 -------------------~-~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G 260 (434)
+ ...+.+.+.+.+++. ++++++++++++++.++++....++..+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223444555554 799999999999987544433334444564 689999999999
Q ss_pred CccCh
Q 013914 261 GRPLI 265 (434)
Q Consensus 261 ~~p~~ 265 (434)
.....
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 76544
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00063 Score=65.81 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
++|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999876432100
Q ss_pred -cC--------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEE
Q 013914 202 -LF--------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVV 256 (434)
Q Consensus 202 -~~--------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~~~~~D~vi 256 (434)
.+ -.++.+.+.+.+.+ .+++++++++++++..++++ ..+++ .+++++++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 00 01222334444444 47999999999999874333 34444 344679999999
Q ss_pred EcccCccCh
Q 013914 257 VGVGGRPLI 265 (434)
Q Consensus 257 ~a~G~~p~~ 265 (434)
-|-|....+
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999965433
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00065 Score=67.32 Aligned_cols=99 Identities=11% Similarity=0.078 Sum_probs=66.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCc----------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
++|+|||+|+.|+-++..|.+.+ .+|+++++.+.+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 47999999999999999998764 479999885432110
Q ss_pred --------------c-----CCHHHHH---HHHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCC-CcEEECCEEE
Q 013914 202 --------------L-----FTADIAA---FYEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKD-GRTLEADIVV 256 (434)
Q Consensus 202 --------------~-----~~~~~~~---~~~~~l~~~G--V~~~~~~~v~~i~~~~~g~v~~v~~~~-g~~~~~D~vi 256 (434)
+ +...+.+ .+.+.+.+.| +.++.+++|+++...+++ ..+.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 0000111 1222334555 788889999999874333 4567655 4679999999
Q ss_pred EcccCccC
Q 013914 257 VGVGGRPL 264 (434)
Q Consensus 257 ~a~G~~p~ 264 (434)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99996543
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00057 Score=67.94 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------Ccc--C---------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------PRL--F--------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------~~~--~--------------------- 203 (434)
.++|||+|+.|+++|..+++.|.+|.++++..... ... +
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999998652110 000 0
Q ss_pred ------------CH-HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 ------------TA-DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ------------~~-~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
|. .+...+.+.+++. +++++.+ .+..+..++++.+.+|.+.+|..+.||.||+|+|.-
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF 153 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence 00 1123445556665 7888765 566765534678889999999999999999999954
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=75.34 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. +.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~d- 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-RD- 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-Cc-
Confidence 35799999999999999999999999999999877641 21 1456666777778889999999887541 11
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+.+.+. ...+|.|++|+|..+.
T Consensus 270 --------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 --------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred --------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 112221 2359999999997653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=75.51 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=67.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~-~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+..-
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD-- 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc--
Confidence 36799999999999999999999999999999876532 1 1145667666677888999999999865210
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+.+.+. ...+|.|++|+|..+
T Consensus 404 --------i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 404 --------ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred --------CCHHHH-HhcCCEEEEeCCCCC
Confidence 111111 236999999999643
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=73.47 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh-Hh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW-YK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (434)
..+++|||||+.|+-.|..|++.|.+ |++|++.+... +. + ...+ ....... ++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~e---VTLIe~~~~ll---~~-----~----d~ei-----------s~~l~~~ll~ 365 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSE---VVSFEYSPQLL---PL-----L----DADV-----------AKYFERVFLK 365 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccc---cc-----C----CHHH-----------HHHHHHHHhh
Confidence 35899999999999999999998876 99999976421 00 0 0000 0112222 34
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEE--cc-------CC--------cEEEcceEEEecCCCcccc
Q 013914 84 EKGIELILSTEIVRADIASK--TLL--SA-------TG--------LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~--~~-------~~--------~~~~~d~lvlAtG~~~~~~ 129 (434)
+.|++++.++.+..+..+.. .+. +. ++ +++.+|.+++|+|-+|+..
T Consensus 366 ~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~ 430 (659)
T PTZ00153 366 SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN 430 (659)
T ss_pred cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc
Confidence 67999999999999876542 232 21 11 2699999999999998754
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=69.12 Aligned_cols=92 Identities=13% Similarity=0.150 Sum_probs=61.6
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEccCCccCCcc---------CCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAAL-KINNIDVSMVYPEPWCMPRL---------FTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l-~~~g~~v~lv~~~~~~~~~~---------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.+++|+|||+|+.|+.+|..| .+.|.+|+++++.+.+..-. .-+.+.+.+...+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999965 46799999999988763210 1124455555566678888875433211
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.++.++= .-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2268999999997653
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0002 Score=64.14 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..+||+|||+|.|||-||.+|+..|.+ |+++|++..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~---V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKR---VLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCce---EEEEccccc
Confidence 4468999999999999999999999988 999999865
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=72.24 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||+.|+-.|..|++.+.+ |+|+++.+... + .+.. .......+.+++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~---Vtlv~~~~~il---~----------------~~d~----~~~~~l~~~L~~ 305 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSD---VHVFIRQKKVL---R----------------GFDE----EVRDFVAEQMSL 305 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEEeccccc---c----------------ccCH----HHHHHHHHHHHH
Confidence 46899999999999999999998866 99999875311 0 0000 001233466778
Q ss_pred cCcEEEcCCeeEEEECC-CCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIA-SKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++... ... +...++....+|.+++|+|.+|+..
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 89999999888888643 232 3333444445899999999998754
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00037 Score=58.90 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEc--------------------cCCccCCccCCHHHHHHHHHHHHhcCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVY--------------------PEPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~--------------------~~~~~~~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
..+++|||+|+.+.-.|-.+++...+..+++ .-|.|......+++.+.+++..++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 3589999999999999999988765544443 23444445567899999999999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 223 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 223 ~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+ |.+++. .++...+.+ +.+.+.+|.||+|||...
T Consensus 88 ~tEt-Vskv~~--sskpF~l~t-d~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 88 ITET-VSKVDL--SSKPFKLWT-DARPVTADAVILATGASA 124 (322)
T ss_pred eeee-hhhccc--cCCCeEEEe-cCCceeeeeEEEecccce
Confidence 8775 777766 344445555 445789999999999543
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00055 Score=73.58 Aligned_cols=101 Identities=24% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------CHHHHHHHHHHHHhc-CcEEEcCCeEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANK-GIKIIKGTVAVGF 231 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i 231 (434)
...|+|||+|+.|+.+|..+.+.|.+|++++..+.+..... ..++...+.+.+++. +|+++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 46899999999999999999999999999998765432111 123334455556655 5999999998887
Q ss_pred EecCCCcEEEEE-eC-------CC------cEEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVK-LK-------DG------RTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~-~~-------~g------~~~~~D~vi~a~G~~p~~ 265 (434)
.. ++.+..+. .. ++ .++.+|.||+|||..|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22222221 00 11 158899999999987654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.67 E-value=6e-05 Score=71.23 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+||+|||||++|+++|..|++.|.+ |+|+|+++..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~---V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKR---VLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCC
Confidence 6999999999999999999998876 9999997653
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.9e-05 Score=74.85 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++.|.+ |+|+|+...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~---V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRR---VHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCe---EEEEECcCC
Confidence 468999999999999999999999987 999999753
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0007 Score=68.12 Aligned_cols=100 Identities=25% Similarity=0.332 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------c------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L------ 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~------ 202 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 468999999999999999999999999999876432100 0
Q ss_pred ----CC-----------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEE
Q 013914 203 ----FT-----------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVV 256 (434)
Q Consensus 203 ----~~-----------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi 256 (434)
++ +.+.+.+.+.+.+ .|+++++++++++++.++++ ..+++. +| +++++|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 00 1123344444555 48999999999999875555 344554 56 478999999
Q ss_pred EcccCccC
Q 013914 257 VGVGGRPL 264 (434)
Q Consensus 257 ~a~G~~p~ 264 (434)
-|.|.+..
T Consensus 168 gADG~~S~ 175 (538)
T PRK06183 168 GCDGANSF 175 (538)
T ss_pred ecCCCchh
Confidence 99996543
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.2e-05 Score=73.67 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=34.4
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+++++++++|++|...+++ ..|++.+|+++.+|.||+|+..
T Consensus 210 ~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNG--VKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred cCceeCCCeeEEEEEcCCc--EEEEECCCcEEEcCEEEEecCH
Confidence 6789999999999875444 4678888888999999999863
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.8e-05 Score=71.14 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+|||||++|+.+|+.|++.|++ |+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~---V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVP---VELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCc---EEEEEccCc
Confidence 5999999999999999999999987 999997654
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00032 Score=66.81 Aligned_cols=93 Identities=24% Similarity=0.375 Sum_probs=63.8
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCc----cCCHHHH-------------------------------
Q 013914 166 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----LFTADIA------------------------------- 208 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~----~~~~~~~------------------------------- 208 (434)
++|||+|+.|+.+|..|.+. |.+|.++++.+.+.+. .+..++.
T Consensus 2 viIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~ 81 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKT 81 (370)
T ss_pred EEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCC
Confidence 78999999999999999987 9999999987643321 0111111
Q ss_pred -------HHHHH-HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 209 -------AFYEG-YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 209 -------~~~~~-~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+.+ .+++.+..++++++|.+++. ++ +++.+|+++.+|.||.|.|.++.
T Consensus 82 ~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 82 AYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 01111 12332444777888888843 32 55588999999999999997764
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=67.37 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCcc----CCH-------------HH-------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----FTA-------------DI------------------- 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~----~~~-------------~~------------------- 207 (434)
+|+|||+|+.|+-+|..|.+.| .+|+++++.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999875532100 000 00
Q ss_pred ----------------------HHHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 208 ----------------------AAFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 208 ----------------------~~~~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
...+.+.|.+ ..+.++++++|++++.++++ ..+.+++|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0111122222 14567889999999874444 568888999999999999999654
Q ss_pred C
Q 013914 264 L 264 (434)
Q Consensus 264 ~ 264 (434)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 3
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.6e-05 Score=74.13 Aligned_cols=95 Identities=21% Similarity=0.354 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------------------------------------------
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------------- 201 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-------------------------------------------- 201 (434)
|+|||+|+.|+-+|..+++.|.+|.|+++.+.+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~~ 81 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYGW 81 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST--------------
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccccc
Confidence 799999999999999999999999999987553100
Q ss_pred ----cCCHH-HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---CcEEECCEEEEcccC
Q 013914 202 ----LFTAD-IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ----~~~~~-~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~~~~~D~vi~a~G~ 261 (434)
.+++. ....+.+.+++.||++++++.+.++.. +++++.+|.+.+ ..++.++.+|-|||.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 82 VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 01111 122455667788999999999999987 466788888765 457899999999994
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.3e-05 Score=70.97 Aligned_cols=82 Identities=29% Similarity=0.486 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe---CCC--cEEECCEEEEcccCccChhhhhccccc--cCC
Q 013914 206 DIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL---KDG--RTLEADIVVVGVGGRPLISLFKGQVAE--NKG 277 (434)
Q Consensus 206 ~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~--~~g 277 (434)
.+.+.+.+.+++. |++++++++|+.++...+|. ..|.+ .+| .++.++.|++..|--...-+-+.++.. .-|
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyg 260 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYG 260 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccC
Confidence 4455555556665 99999999999999866663 23433 223 578999999999965433333455543 223
Q ss_pred cEEe-CCCCCCC
Q 013914 278 GIET-DDFFKTS 288 (434)
Q Consensus 278 ~i~v-d~~~~t~ 288 (434)
+..| -.++++.
T Consensus 261 gfPVsG~fl~~~ 272 (488)
T PF06039_consen 261 GFPVSGQFLRCK 272 (488)
T ss_pred CCcccceEEecC
Confidence 3333 3455554
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=69.63 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|.+|+++|..|+++|.+ |+++|+.+... .....+.+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~---V~~~d~~~~~~------------------------------~~~~~~~l~~ 62 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGAR---VTVVDDGDDER------------------------------HRALAAILEA 62 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCchhh------------------------------hHHHHHHHHH
Confidence 46899999999999999999999986 99999764200 0122345667
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC-CC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KN 163 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~-~~ 163 (434)
.|+++..+..+. ....+|.+|+++|..|..|. +......++-.....+- +....... +.
T Consensus 63 ~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~---~~~a~~~gi~v~~~~e~---~~~~~~~~~~~ 122 (480)
T PRK01438 63 LGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDAPL---LAAAADAGIPVWGEVEL---AWRLRDPDRPA 122 (480)
T ss_pred cCCEEEECCCcc--------------ccCCCCEEEECCCcCCCCHH---HHHHHHCCCeecchHHH---HHHhhhccCCC
Confidence 799988874332 02458999999999887664 22222223322222221 11222110 12
Q ss_pred CcEEEECCC---HHHHHHHHHHHhCCCeEEEE
Q 013914 164 GKAVVVGGG---YIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 164 ~~v~ViG~g---~~~~e~a~~l~~~g~~v~lv 192 (434)
+.+.|-|+. -+..-++..|...|.++...
T Consensus 123 ~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 123 PWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 345565542 23445666777777766544
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0009 Score=64.46 Aligned_cols=99 Identities=31% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------c-----------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------L----------------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----------------~----------------------- 202 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+..... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 347999999999999999999999999999986432000 0
Q ss_pred -------C---------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 203 -------F---------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 203 -------~---------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
+ ...+.+.+.+.+.+. ++. +.+++|.+++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 0 012234444555555 455 779999999764443 45788888899999999999
Q ss_pred cCccC
Q 013914 260 GGRPL 264 (434)
Q Consensus 260 G~~p~ 264 (434)
|....
T Consensus 164 G~~S~ 168 (388)
T PRK07494 164 GRNSP 168 (388)
T ss_pred CCCch
Confidence 97653
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=64.95 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEccc-CccChhhhh
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g~--~~~~D~vi~a~G-~~p~~~~~~ 269 (434)
+.+.+.+.+++.|++++++++++++..++++++.++... +++ .+.++.||+|+| +..|.++..
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 344555667788999999999999987556777766553 443 468999999999 566665553
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00087 Score=64.69 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCC-c--cCCc--------------------cCC-------------
Q 013914 164 GKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEP-W--CMPR--------------------LFT------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~-~--~~~~--------------------~~~------------- 204 (434)
-.|+|||+|+.|+-+|..|++. |.+|+++++.. . ..+. .++
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4799999999999999999998 99999999831 1 0000 000
Q ss_pred ----------------------------HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEE
Q 013914 205 ----------------------------ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255 (434)
Q Consensus 205 ----------------------------~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~v 255 (434)
.++.+.+.+.+++ .|++++.+++++++...+++ ..+++.+|.++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0112334444444 47999999999999763333 4577888888999999
Q ss_pred EEcccCccC
Q 013914 256 VVGVGGRPL 264 (434)
Q Consensus 256 i~a~G~~p~ 264 (434)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (395)
T PRK05732 162 VAADGSHSA 170 (395)
T ss_pred EEecCCChh
Confidence 999997654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=64.05 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=70.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----cC-----------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF----------------------------------- 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----~~----------------------------------- 203 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 357999999999999999999999999999976421000 00
Q ss_pred ---------------------CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc-EEECCEEEEc
Q 013914 204 ---------------------TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR-TLEADIVVVG 258 (434)
Q Consensus 204 ---------------------~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~--~~~g~-~~~~D~vi~a 258 (434)
...+.+.+.+.+++ .|++++.++++.++..+ ++.+..+. ..+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 01223344444444 48999999999999863 44444343 44664 7999999999
Q ss_pred ccCcc
Q 013914 259 VGGRP 263 (434)
Q Consensus 259 ~G~~p 263 (434)
.|...
T Consensus 165 dG~~S 169 (407)
T PRK06185 165 DGRHS 169 (407)
T ss_pred CCCch
Confidence 99754
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.58 E-value=8.1e-05 Score=74.89 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...+||||||+|.|||+||..+++.|.+ |+||||.+
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~---VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKR---VLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 4579999999999999999999999987 99999987
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=8e-05 Score=74.47 Aligned_cols=35 Identities=23% Similarity=0.557 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+||+|||||++|+++|..|++.|.+ |+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~---V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRK---VLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCE---EEEEcccc
Confidence 468999999999999999999999987 99999975
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00011 Score=69.11 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=34.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
...+|||||||.|||+||.+|.+.|+.+ ++|+|..+..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~--~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFID--VLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCce--EEEEEeccccC
Confidence 3578999999999999999999888766 99999998754
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=74.36 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|+|||||++||++|..|++.|++ |+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~---V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFD---VLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCe---EEEEeccc
Confidence 458999999999999999999999987 99999975
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=62.77 Aligned_cols=96 Identities=28% Similarity=0.336 Sum_probs=70.7
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCeEEEEccCCcc--CCcc----C----------------------------------
Q 013914 166 AVVVGGGYIGLELSAAL--KINNIDVSMVYPEPWC--MPRL----F---------------------------------- 203 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l--~~~g~~v~lv~~~~~~--~~~~----~---------------------------------- 203 (434)
++|||+|+.|+-+|..| .+.|.+|.++++.+.. .+.. +
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876554 1100 0
Q ss_pred ----CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 ----TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ----~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+.+.+ ....+..|.+|+..++ ...+.+++|+++.++.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0123445555666445 4667788999987433 35788999999999999999996544
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=72.69 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.+.+.+.+.+++ ++++++++|++|+..+++ ..+.+.+|+++.+|.||+++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCC
Confidence 344555554543 579999999999874443 467778888899999999987
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=74.33 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=35.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~ 42 (434)
||...+|+||||+|.||+.+|.+|++ .|.+ |+|||+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~---VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVS---VLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCe---EEEecCCCc
Confidence 78888999999999999999999999 6776 999999853
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=70.22 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=33.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++|+|+|||.|||+||.+|+++|++ |+|+|+++..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~---vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYD---VTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---eEEEeccCccC
Confidence 3799999999999999999999987 99999998754
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0017 Score=61.53 Aligned_cols=96 Identities=17% Similarity=0.275 Sum_probs=66.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------CccCCH-------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PRLFTA------------------------------- 205 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~~~~~------------------------------- 205 (434)
.|+|||+|+.|+-+|..|++. .+|+++++.+... ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999999 9999999775321 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccC
Q 013914 206 ------------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPL 264 (434)
Q Consensus 206 ------------------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~ 264 (434)
++.+.+.+ ..+.|++++.++.++++...+++ ..+.+ .+|+ ++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 01111222 23468999999999999874444 34554 5664 6899999999997543
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=53.92 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=32.7
Q ss_pred cCcEEE-cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 218 KGIKII-KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~-~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.|+++. ...+|..+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 355543 35588889885555 5788899999999999999995
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=63.24 Aligned_cols=97 Identities=24% Similarity=0.320 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC----CeEEEEccCCccCC----c---------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN----IDVSMVYPEPWCMP----R--------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g----~~v~lv~~~~~~~~----~--------------------------------- 201 (434)
...|+|||+|+.|+-+|..|++.| .+|+++++.+..-. +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 458999999999999999999986 47999987531100 0
Q ss_pred -c-------------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEE
Q 013914 202 -L-------------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVV 257 (434)
Q Consensus 202 -~-------------------~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~ 257 (434)
. . ...+.+.+.+.+++.|++++.++++.+++.+.++ ..+++.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 0 0 1245667777788889999999999999764444 45667654 5899999999
Q ss_pred cccC
Q 013914 258 GVGG 261 (434)
Q Consensus 258 a~G~ 261 (434)
|-|.
T Consensus 169 ADG~ 172 (398)
T PRK06996 169 AEGG 172 (398)
T ss_pred CCCC
Confidence 9995
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0018 Score=63.34 Aligned_cols=102 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCeEEEEccCC--ccC------------Ccc--CC--------------------
Q 013914 165 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP--WCM------------PRL--FT-------------------- 204 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~----~g~~v~lv~~~~--~~~------------~~~--~~-------------------- 204 (434)
.|+|||+|+.|+-+|..|++ .|.+|+++++.+ ... .+. +.
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 110 000 00
Q ss_pred -----------------------------------HHHHHHHHHHHHhcC---cEEEcCCeEEEEEec-----CCCcEEE
Q 013914 205 -----------------------------------ADIAAFYEGYYANKG---IKIIKGTVAVGFTTN-----ADGEVKE 241 (434)
Q Consensus 205 -----------------------------------~~~~~~~~~~l~~~G---V~~~~~~~v~~i~~~-----~~g~v~~ 241 (434)
..+.+.+.+.+++.+ +++++++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 112344455556654 999999999999741 2233357
Q ss_pred EEeCCCcEEECCEEEEcccCccChh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+++.+|+++.+|+||-|-|....+.
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 8889999999999999999765543
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0004 Score=70.22 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=66.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------ccCCHHHHHHHHHHHHhcCcEEEcCCeE-EEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------RLFTADIAAFYEGYYANKGIKIIKGTVA-VGFT 232 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------~~~~~~~~~~~~~~l~~~GV~~~~~~~v-~~i~ 232 (434)
.+++|+|||+|++|+.+|..|.+.|.+|+++++.+.+.. ..++.++.+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999997765421 1135556665566788899999988765 2221
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
. +. + ...+|.|++|+|..+.
T Consensus 216 ~--~~------~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L--EQ------L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred H--HH------H----HhhCCEEEEeeCCCCC
Confidence 1 00 1 1248999999997643
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00029 Score=66.19 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|||||||||.||..||...+|.|.+ .+++..+-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~---TlLlT~~l 61 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGAR---TLLLTHNL 61 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCc---eEEeeccc
Confidence 468999999999999999999999987 57777764
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0004 Score=70.88 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
++++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . .++.++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 467899999999999999999999999999988765421 1 134555566667889999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..++ ....+|.||+|+|..
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~ 379 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFT 379 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcC
Confidence 11111 134799999999975
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00033 Score=72.04 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------c-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------R-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++.. . .+|+-+.+.-.++|.+.||+|..++.|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 578999999999999999999999999999999988632 1 157778888889999999999998765321
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+. -|+-.-+-|.||+|+|..
T Consensus 1862 --------vs-~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 --------VS-LDELKKENDAIVLATGST 1881 (2142)
T ss_pred --------cc-HHHHhhccCeEEEEeCCC
Confidence 11 122234578999999954
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0022 Score=61.78 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=71.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--Cc----c-----------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----L----------------------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--~~----~----------------------------------- 202 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 479999999999999999999999999999875310 00 0
Q ss_pred -----C-------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEe-CCCc--EEECCEEEEccc
Q 013914 203 -----F-------------TADIAAFYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKL-KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 203 -----~-------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~~~~D~vi~a~G 260 (434)
+ ...+.+.+.+...+.|+++++++++++++. ++++ ..|++ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 0 012233444445678999999999999875 2222 34555 4664 689999999999
Q ss_pred CccCh
Q 013914 261 GRPLI 265 (434)
Q Consensus 261 ~~p~~ 265 (434)
....+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 76544
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=67.37 Aligned_cols=66 Identities=12% Similarity=0.244 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCC--Cc----EEECCEEEEcccCccChhhh-hccc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKD--GR----TLEADIVVVGVGGRPLISLF-KGQV 272 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v~~v~~~~--g~----~~~~D~vi~a~G~~p~~~~~-~~~~ 272 (434)
...++...+++.++++++++.|++|..+ +++++.+|++.+ +. .+.++.||+|.|.--...+| .+++
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 4456666666669999999999999552 466777776643 33 46689999999954444443 4443
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00049 Score=65.81 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+|+|||+|..|+++|..|++.|.+|++++..+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999976654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0024 Score=61.51 Aligned_cols=97 Identities=20% Similarity=0.359 Sum_probs=67.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccC--------------------------------Cc----------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCM--------------------------------PR---------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~--------------------------------~~---------- 201 (434)
.|+|||+|+.|+-+|..|++.|.+|.++++. +... +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 2110 00
Q ss_pred ---c---CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC------C--cEEECCEEEEcccCccC
Q 013914 202 ---L---FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD------G--RTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 ---~---~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~------g--~~~~~D~vi~a~G~~p~ 264 (434)
+ ++ ..+.+.+.+.+.+.|++++.+ .++++..++++ ..+++.+ | .++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0 01 122345556667789999765 58888763333 3455442 2 37899999999996543
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00041 Score=72.14 Aligned_cols=34 Identities=26% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+++|+|||+|+.|+.+|..|.+.|++|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00021 Score=71.19 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||+| ||++||.++++.|.+ |+||||.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~---V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLS---VALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCc---EEEEecCCC
Confidence 6899999999 999999999999987 999999875
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0027 Score=61.70 Aligned_cols=98 Identities=26% Similarity=0.353 Sum_probs=67.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------C------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------F------------------------ 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----------------~------------------------ 203 (434)
+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.. +
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 68999999999999999999999999998875321100 0
Q ss_pred -------------------CHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCCC-----cEEECCEEEE
Q 013914 204 -------------------TADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKDG-----RTLEADIVVV 257 (434)
Q Consensus 204 -------------------~~~~~~~~~~~l~~-~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g-----~~~~~D~vi~ 257 (434)
...+.+.+.+.+.+ .| +++++++++++++.++++.+ +.+.++ +++++|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00112233333333 35 57999999999987555533 333332 4899999999
Q ss_pred cccCccC
Q 013914 258 GVGGRPL 264 (434)
Q Consensus 258 a~G~~p~ 264 (434)
|-|....
T Consensus 160 ADG~~S~ 166 (413)
T PRK07538 160 ADGIHSA 166 (413)
T ss_pred CCCCCHH
Confidence 9996543
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00028 Score=69.70 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=34.0
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.+++++++|++|+.++++ ..|++.+|+++.+|.||++++
T Consensus 245 ~~I~l~~~V~~I~~~~~g--V~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 245 PRLKLNKVVREISYSKNG--VTVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred CceecCCEeeEEEEcCCc--EEEEECCCCEEEeCEEEEccC
Confidence 679999999999885554 578889999999999999988
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=61.49 Aligned_cols=102 Identities=21% Similarity=0.291 Sum_probs=72.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-C---------CHHHHHHHHHHHHhc--CcEEEcCCeEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-F---------TADIAAFYEGYYANK--GIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-~---------~~~~~~~~~~~l~~~--GV~~~~~~~v~ 229 (434)
+.++++|+|+|+.|+.+...|-..-.+|+++.+.+.++-.. + -..+.+.+....++. +++++. +.-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe-cccE
Confidence 46899999999999999999999999999999998875321 1 245666777766665 455543 3445
Q ss_pred EEEecCCCcEEEE--EeCCC----cEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEV--KLKDG----RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v--~~~~g----~~~~~D~vi~a~G~~p~~~ 266 (434)
.++. +.+...+ .++++ -.+.+|.+|+|+|..|++.
T Consensus 133 ~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 6665 3322233 23444 3688999999999988875
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00029 Score=71.17 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++++++++++..+++|++.+|... +|+ ++.++ .||+|+| +.-|.++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHH
Confidence 445566667777788888888888888877556777776543 332 35676 4777777 555665553
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=61.31 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC---cEEEEEe-CCCc--EE---ECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG---EVKEVKL-KDGR--TL---EADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g---~v~~v~~-~~g~--~~---~~D~vi~a~G~~ 262 (434)
-+.+...+.+.|+++||+|+++++|+.++.+.++ .+..+.+ .+|. .+ +-|+|++..|..
T Consensus 206 yeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 206 YESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 4677889999999999999999999999763322 2333333 4443 23 358899888853
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=56.57 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=65.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-------------------CCHHHHHHHHHH-----------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------------------FTADIAAFYEGY----------- 214 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-------------------~~~~~~~~~~~~----------- 214 (434)
+++|||+|..|+.+|..|+..|.+|++++++.-+..++ -++.+.+.++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 68999999999999999999999999999874322110 012222222211
Q ss_pred ------------------------------HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCc
Q 013914 215 ------------------------------YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGR 262 (434)
Q Consensus 215 ------------------------------l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~ 262 (434)
.-.-..++.++++|+++... ++...+.+++| +...+|.|++++..-
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~--~~~W~l~~~~g~~~~~~d~vvla~PAP 159 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVART--DNDWTLHTDDGTRHTQFDDVVLAIPAP 159 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheec--CCeeEEEecCCCcccccceEEEecCCC
Confidence 11123567778888888763 34467888666 467899999998853
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=57.94 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=78.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--Ccc-----------CCccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWC-----------MPRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~-----------~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.+-.|+|||+|+.|...|-..++.|.+.-++... ... .+....+.+...+++..++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 5668999999999999999999988765443210 000 122246789999999999999999988888
Q ss_pred EEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 229 VGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 229 ~~i~~~-~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+++++. ..+....+++++|-.+++..+|++||.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888762 2355678999999999999999999953
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0041 Score=62.77 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=68.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
...|+|||+|+.|+-+|..|.+.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999876321000
Q ss_pred -------------c----------------------CC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 202 -------------L----------------------FT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 202 -------------~----------------------~~-~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
. .+ ..+.+.+.+.+++ .++++++++++++++.++++ + .+++
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-V-TATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-E-EEEE
Confidence 0 00 0122333444444 48999999999999874444 2 2333
Q ss_pred ---CCCc--EEECCEEEEcccCcc
Q 013914 245 ---KDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 245 ---~~g~--~~~~D~vi~a~G~~p 263 (434)
.+|+ ++.+|.||.|.|...
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcch
Confidence 3454 689999999999643
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00039 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+|+|||||++|+.+|..|+++|.+ |+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~---V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP---VILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc---EEEEecccc
Confidence 3799999999999999999999987 999998754
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00041 Score=64.36 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.+|||||||.+|+++|..|.++|.+ |+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~---v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGID---VVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCe---EEEEeeccc
Confidence 46899999999999999999999998 999999654
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0065 Score=58.62 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=66.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---c---------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---L--------------------------------------- 202 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---~--------------------------------------- 202 (434)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.+... .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 6899999999999999999999999999876331100 0
Q ss_pred --------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEe--CC-----C--cEEECCEEEEcccCcc
Q 013914 203 --------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKL--KD-----G--RTLEADIVVVGVGGRP 263 (434)
Q Consensus 203 --------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~~~~D~vi~a~G~~p 263 (434)
++ ..+.+.+.+.+.+.|++++.++ +..+... ..+....+++ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1122345556677899998775 6666431 1222234443 22 3 3789999999999765
Q ss_pred Ch
Q 013914 264 LI 265 (434)
Q Consensus 264 ~~ 265 (434)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 43
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0042 Score=59.80 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=69.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--Cc----cCC---------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--PR----LFT--------------------------------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--~~----~~~--------------------------------- 204 (434)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .. .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999876310 00 000
Q ss_pred --------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECCEEEEcccC
Q 013914 205 --------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 205 --------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+.+.|+.++++.+++.+...++.. ..|++. +|+ ++++|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 1122334445556788888888777775412222 356664 775 6899999999996
Q ss_pred ccCh
Q 013914 262 RPLI 265 (434)
Q Consensus 262 ~p~~ 265 (434)
....
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 5543
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00051 Score=62.83 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+.+|||+|..||..+.-..+.|.+ |+++|-.+...-. + ..+ ....+...+.+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGse---VT~VEf~~~i~~~--------m----D~E-----------isk~~qr~L~k 264 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSE---VTVVEFLDQIGGV--------M----DGE-----------ISKAFQRVLQK 264 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCe---EEEEEehhhhccc--------c----CHH-----------HHHHHHHHHHh
Confidence 46899999999999999999999876 9999987653210 0 000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCC-E--EEcc---CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK-T--LLSA---TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~--v~~~---~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++|.+++.|....++.. . +.+. ++ +++++|.|++++|-+|+..
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence 9999999999999988765 3 3332 22 4789999999999998743
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00049 Score=70.49 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+.++|+|||||++|++||..|+++|++ |+|+|+++..+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFK---VVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCc---EEEEecCccCc
Confidence 357999999999999999999999987 99999987643
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0056 Score=56.95 Aligned_cols=119 Identities=22% Similarity=0.248 Sum_probs=78.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCccCccccCCCCCCCCCC-----------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLPG----------- 65 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------- 65 (434)
+.+||+||||||||+.||..++++|.+ |+|||+.+... -.||.++..........+.|+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~---V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRR---VLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCE---EEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 478999999999999999999999987 99999998632 122332221111111111110
Q ss_pred --------c------ccccC--CC----------CCCCChhhHhhcCcEEEcCCeeEEEECCC--CEEEccCCcEEEcce
Q 013914 66 --------F------HVCVG--SG----------GERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQI 117 (434)
Q Consensus 66 --------~------~~~~~--~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~ 117 (434)
| .+..+ .. ..+.+...+++.||+++.+++|.+++.+. ..+.+.+++++.+|.
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~ 158 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDS 158 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccE
Confidence 0 00000 00 01123334566899999999999999885 457778888899999
Q ss_pred EEEecCCC
Q 013914 118 LVIATGST 125 (434)
Q Consensus 118 lvlAtG~~ 125 (434)
+|+|||..
T Consensus 159 lilAtGG~ 166 (408)
T COG2081 159 LILATGGK 166 (408)
T ss_pred EEEecCCc
Confidence 99999943
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0005 Score=69.17 Aligned_cols=65 Identities=22% Similarity=0.186 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEECC-EEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEAD-IVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~D-~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.|++++.+++++++.. +++++.+|... +|+ ++.++ .||+|+| +.-|.+++.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEEEECCeEEEEEecceEEEecCCccCCHHHHH
Confidence 566777777888888999999999988876 36777776553 343 46674 6888887 555555543
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0074 Score=61.29 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56899999999999999999999999999999865
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00071 Score=62.90 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
.++|+|+|||.+||++|++|++++. +..|+|+|+.+..+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 4789999999999999999999875 56688899998753
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=63.48 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC------------------------------------------Cc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM------------------------------------------PR 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~------------------------------------------~~ 201 (434)
-.|+|||+|..|+|+|.+.++.|.++.++.....-. ..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 478999999999999999999999988876541110 00
Q ss_pred c-----------CCHH-HHHHHHHHHH-hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 202 L-----------FTAD-IAAFYEGYYA-NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 202 ~-----------~~~~-~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
. .|.. ....+++.++ ..++.++.+. |.++...++.++.+|.+.+|..+.|+.||++||.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 0 0001 1233333343 2466666554 5565543333689999999999999999999994
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=63.26 Aligned_cols=102 Identities=24% Similarity=0.396 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccC------CccC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCM------PRLF-----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~------~~~~-----~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..+++|||.|..|..+...+.+. -..+|++...++.. .+.+ -.++.-.-.++.+++||+++.+.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999888888773 36788876554431 1111 1233344467889999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
..|.. +. ..|.++.|.++.+|.+|+|||+.|.....
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~Pi 118 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPI 118 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCC
Confidence 99986 33 46888999999999999999999876654
|
|
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00053 Score=62.76 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...||+|||||.+|-+.|..|+|.|.+ |.||||+-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRr---VhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRR---VHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcE---EEEEeccc
Confidence 458999999999999999999999987 99999984
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00081 Score=67.63 Aligned_cols=65 Identities=26% Similarity=0.190 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CCc--EEEC-CEEEEccc-CccChhhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DGR--TLEA-DIVVVGVG-GRPLISLFK 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g~--~~~~-D~vi~a~G-~~p~~~~~~ 269 (434)
...+...+.+.+++.||+++++++++++.. ++|++.+|... +|+ .+.+ ..||+|+| +.-|.++..
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 577888888889999999999999999876 46888887543 443 3455 57999998 655655543
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00065 Score=70.04 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|++||+.|.+.|++ |+|+|+++..+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~---v~v~E~~~r~G 274 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFK---VVVLEGRARPG 274 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeccccCC
Confidence 57899999999999999999999987 99999997643
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00079 Score=60.29 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++|++|||+|.+|+..|..|+++|.+ |.||||.+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~---VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKR---VLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCE---EEEEeccccCC
Confidence 47999999999999999999999987 99999998754
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00057 Score=71.49 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
+|+|||||+||+++|..|++. |++ |+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~---V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHE---VTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCe---EEEEecCCC
Confidence 799999999999999999998 666 999999875
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=62.88 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+++|+|||+|+.|+.+|..|++.|+.|+++++.+..... .++.++.+...+.|++.|++|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 3689999999999999999999999999999988765321 25678899999999999999999987531
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+++++- .-+.|.|++++|.
T Consensus 199 -------~it~~~L-~~e~Dav~l~~G~ 218 (457)
T COG0493 199 -------DITLEEL-LKEYDAVFLATGA 218 (457)
T ss_pred -------cCCHHHH-HHhhCEEEEeccc
Confidence 0111111 2235999999994
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.011 Score=58.30 Aligned_cols=95 Identities=27% Similarity=0.389 Sum_probs=65.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------c----------------cCC---------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------R----------------LFT--------- 204 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------------~----------------~~~--------- 204 (434)
..|+|||+|..|+-+|..+++.|.+|.++++.+.... . ..+
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3689999999999999999999999999877421100 0 001
Q ss_pred --------------------------------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC
Q 013914 205 --------------------------------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 246 (434)
Q Consensus 205 --------------------------------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~ 246 (434)
..+.+.+.+.+++.||+++.+ .+..+.. +++++.++.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123344445566677887765 5666654 3566666665 4
Q ss_pred CcEEECCEEEEcccC
Q 013914 247 GRTLEADIVVVGVGG 261 (434)
Q Consensus 247 g~~~~~D~vi~a~G~ 261 (434)
++.+.++.||+|||-
T Consensus 159 g~~i~a~~VVLATGG 173 (466)
T PRK08401 159 GELLKFDATVIATGG 173 (466)
T ss_pred CEEEEeCeEEECCCc
Confidence 567899999999994
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00091 Score=66.26 Aligned_cols=56 Identities=13% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCC--CcEEEEEeC---CCc--EEECCEEEEcccCccChhhh
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNAD--GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~--g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~ 268 (434)
+.++..+++++.++.|.+|..+++ +++..+... +|+ ++.|+.||+|.|..-+..++
T Consensus 222 ~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLL 284 (544)
T TIGR02462 222 DDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQIL 284 (544)
T ss_pred hhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHH
Confidence 344456699999999999987544 356666443 353 57899999999976666655
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=59.10 Aligned_cols=98 Identities=27% Similarity=0.341 Sum_probs=69.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---------------c----------------c----------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---------------R----------------L---------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---------------~----------------~---------- 202 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.... . .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4799999999999999999999999999876532100 0 0
Q ss_pred ---------------------------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013914 203 ---------------------------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 203 ---------------------------------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g 237 (434)
....+.+.+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 01123344555566778888888889888764456
Q ss_pred cEEEEEeC-------CC-cEEECCEEEEcccC
Q 013914 238 EVKEVKLK-------DG-RTLEADIVVVGVGG 261 (434)
Q Consensus 238 ~v~~v~~~-------~g-~~~~~D~vi~a~G~ 261 (434)
++.++... ++ ..+.++.||+|+|-
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 77776553 22 36889999999994
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=56.69 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC---cc----------C--------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP---RL----------F-------------------------- 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~---~~----------~-------------------------- 203 (434)
.-.|+|||+|+.|+-+|..|++.|.+|.++++.+.... .. +
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 34799999999999999999999999999987632100 00 0
Q ss_pred -----------C-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCC-------C--cEEECCEEEEcccC
Q 013914 204 -----------T-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKD-------G--RTLEADIVVVGVGG 261 (434)
Q Consensus 204 -----------~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-g~v~~v~~~~-------g--~~~~~D~vi~a~G~ 261 (434)
+ ..+.+.+.+.+.+.|++++.+ .+.++....+ +....+++.+ | .++++|.||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 0 012334555667789999766 4767753211 1222344322 3 47999999999996
Q ss_pred ccC
Q 013914 262 RPL 264 (434)
Q Consensus 262 ~p~ 264 (434)
...
T Consensus 198 ~S~ 200 (450)
T PLN00093 198 NSR 200 (450)
T ss_pred chH
Confidence 543
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0023 Score=60.48 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CCHH------HHHHHHHHHHhcCcEEEcCCeEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTAD------IAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~~~------~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
-.++++|||||..|++.|..|++.|.+|+++++.+.+..++ |+.. +.-.+.+....-.|++++.++|+
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~ 202 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVE 202 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeee
Confidence 36799999999999999999999999999999988775432 2221 22334444555679999999999
Q ss_pred EEEe
Q 013914 230 GFTT 233 (434)
Q Consensus 230 ~i~~ 233 (434)
++..
T Consensus 203 ev~G 206 (622)
T COG1148 203 EVSG 206 (622)
T ss_pred eecc
Confidence 9876
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=58.08 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------------------------------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~---------------------------------------- 202 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+....+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 4579999999999999999999999999998763210000
Q ss_pred -----C-----------------CHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEe--CCCcE--EECCEE
Q 013914 203 -----F-----------------TADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKL--KDGRT--LEADIV 255 (434)
Q Consensus 203 -----~-----------------~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~~--~~~D~v 255 (434)
+ ..++.+.+.+.+++. +|+++.++ +.++.. +++.+.++++ .+|++ +.+|+|
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gt-vv~li~-~~~~v~gV~~~~~dG~~~~~~AdLV 200 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGT-VKSLIE-EKGVIKGVTYKNSAGEETTALAPLT 200 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeee-EEEEEE-cCCEEEEEEEEcCCCCEEEEECCEE
Confidence 0 012334444445444 68888664 555554 3454445554 46654 569999
Q ss_pred EEcccCccCh
Q 013914 256 VVGVGGRPLI 265 (434)
Q Consensus 256 i~a~G~~p~~ 265 (434)
|.|.|.....
T Consensus 201 VgADG~~S~v 210 (514)
T PLN02985 201 VVCDGCYSNL 210 (514)
T ss_pred EECCCCchHH
Confidence 9999975544
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.017 Score=58.64 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=37.4
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+++.||+++.++.++++.. ++|++.++.. .+|+ .+.++.||+|+|-
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 34445567899999999999876 3677776654 4564 5789999999994
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.019 Score=57.93 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|-.
T Consensus 140 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 140 KKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 3455555677899999999999998744677777653 3564 47899999999954
|
|
| >PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.013 Score=44.66 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=21.7
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEec-cCceeEEeecCC
Q 013914 325 AVKTIMATEGGKTVTGYDYLPYFYSRA-FDLSWQFYGDNV 363 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~g~~~ 363 (434)
|++||.+.. .+|.++|+||+.+ +++.+..+|...
T Consensus 1 AG~NM~ga~-----~py~hq~~fwSdlgp~vgyeAvG~~D 35 (133)
T PF14721_consen 1 AGENMTGAN-----KPYWHQSMFWSDLGPDVGYEAVGIVD 35 (133)
T ss_dssp HHHHHTTT--------S-S--EEEEESSTTEEEEEEES--
T ss_pred CCccccCCC-----CcccccchhHhhcCCCcCeEEeeecc
Confidence 578888764 7999999999998 578888888643
|
|
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0015 Score=65.37 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC---c-EEECCEEEEcccCccChhhh
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG---R-TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g---~-~~~~D~vi~a~G~~p~~~~~ 268 (434)
..+...++..++.+.+++.+.++.. +.++...+++. ++ + ...++.||+|.|...+..++
T Consensus 207 a~l~~a~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL 271 (542)
T COG2303 207 AYLKPALKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLL 271 (542)
T ss_pred hcchhHhcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHH
Confidence 3444567778899999999999988 45555555553 33 1 24678999999977766665
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.028 Score=56.07 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||||.+|+-+|..+++.|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 479999999999999999999999999999864
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.032 Score=56.92 Aligned_cols=96 Identities=13% Similarity=0.193 Sum_probs=66.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCcc-----------C---------------------CH----
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-----------F---------------------TA---- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~-----------~---------------------~~---- 205 (434)
-.|+|||+|..|+-+|..+++. |.+|.++++.+...... + ++
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 3699999999999999999998 99999988753210000 0 00
Q ss_pred -----------------------------------------HHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEE
Q 013914 206 -----------------------------------------DIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 206 -----------------------------------------~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
.+.+.+.+.+++.+ |+++.++.+.++.. +++++.++.
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-~~g~v~Gv~ 170 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV-DDNRIAGAV 170 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-eCCEEEEEE
Confidence 11222333445555 99999999999875 356666653
Q ss_pred ---eCCCc--EEECCEEEEccc
Q 013914 244 ---LKDGR--TLEADIVVVGVG 260 (434)
Q Consensus 244 ---~~~g~--~~~~D~vi~a~G 260 (434)
..+++ .+.++.||+|+|
T Consensus 171 ~~~~~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 171 GFSVRENKFYVFKAKAVIVATG 192 (608)
T ss_pred EEEccCCcEEEEECCEEEECCC
Confidence 24554 688999999999
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.027 Score=57.35 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.7
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
||+++.++.+.++..+++|++.++... +|+ .+.++.||+|||-
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 788999999998876455688887753 453 5789999999994
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0028 Score=65.63 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+|+|||||++|+++|..|.+.|++ |+|+|+.+..+
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~---V~VlE~~~riG 220 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFK---VTVLEGRKRPG 220 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCc---EEEEEccCcCC
Confidence 58999999999999999999999987 99999987643
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0086 Score=58.92 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|.++.++++|+|+|..|+.+|..|++.|++ |+++|++.
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~---V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAK---VILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 434568999999999999999999999987 99998874
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.03 Score=56.68 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=37.4
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEccc
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVG 260 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G 260 (434)
.+.+.+++.||+++.++.++++.. ++|++.++... +|+ .+.++.||+|||
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 344445567899999999999886 46888887653 332 578999999999
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.032 Score=55.62 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||||.+|+-+|..|++.|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 479999999999999999999999999999874
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.035 Score=54.18 Aligned_cols=53 Identities=21% Similarity=0.322 Sum_probs=37.9
Q ss_pred HHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccC
Q 013914 208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 208 ~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~-~~~g~--~~~~D~vi~a~G~ 261 (434)
.+.+.+.+++ .||+++.++.+.++.. +++++.++. ..+++ .+.++.||+|+|-
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGG 187 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCc
Confidence 3444445544 5899999999999876 356666654 33454 5889999999994
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.005 Score=42.67 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=29.4
Q ss_pred EECCCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013914 168 VVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 200 (434)
Q Consensus 168 ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~ 200 (434)
|||+|.+|+.+|..|.+.|.+|+++++.+++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999887643
|
... |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=56.63 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=36.5
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGG 261 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~ 261 (434)
.+++.||+++.++.+.++.. +++++.++... +|+ .+.++.||+|||-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999999876 35778777653 453 5889999999994
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.037 Score=56.73 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=68.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCc----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
.-.|+|||+|+.|+-+|..|++. |.+|+++++.+.....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35899999999999999999995 9999999876321100
Q ss_pred -------------------------cCC-HHHHHHHHHHHHhcC--cEEEcCCeEEEEEecCCC-cEEEEEeC------C
Q 013914 202 -------------------------LFT-ADIAAFYEGYYANKG--IKIIKGTVAVGFTTNADG-EVKEVKLK------D 246 (434)
Q Consensus 202 -------------------------~~~-~~~~~~~~~~l~~~G--V~~~~~~~v~~i~~~~~g-~v~~v~~~------~ 246 (434)
.+. ..+.+.+.+.+++.| ++++.++++++++.++++ ....+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 000 023344555566665 578889999999764322 22345553 3
Q ss_pred C--cEEECCEEEEcccCc
Q 013914 247 G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 247 g--~~~~~D~vi~a~G~~ 262 (434)
| +++.||+||-|=|.+
T Consensus 192 g~~~tv~A~~lVGaDGa~ 209 (634)
T PRK08294 192 GEEETVRAKYVVGCDGAR 209 (634)
T ss_pred CceEEEEeCEEEECCCCc
Confidence 5 578999999998854
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=57.66 Aligned_cols=82 Identities=24% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
..++++|+|+|.+|+.+|..|.+.|.+|+++++.+ ...+ +...+.+.+.|++++.+.....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~-------~~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE-------EDQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc-------hHHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 46899999999999999999999999999997653 1222 2223446677887665543210
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
..-.+|.||.++|..|+...+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012489999999988877655
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0031 Score=56.97 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~~~~~ 44 (434)
+.||+|||||..|.+.|..|+++-.+ ..+|+|+|+++...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 68999999999999999999876221 13499999997643
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.035 Score=55.15 Aligned_cols=54 Identities=30% Similarity=0.339 Sum_probs=38.8
Q ss_pred HHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCC-C--cEEECCEEEEcccCc
Q 013914 208 AAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKD-G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~-g--~~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++ .||+++.++.++++.. +++.+.++...+ + ..+.++.||+|+|-.
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLI-ETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeec-cCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 3445555555 6899999999999876 356666665543 3 368899999999953
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.065 Score=54.43 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 12 ~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 12 VDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4799999999999999999999999999987654
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0045 Score=66.86 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|+|||+|++|+++|..|.+.|++ |+|+|+++..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~---V~VlEa~~~v 728 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFS---VTVLEARSRI 728 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCc---EEEEeeccCC
Confidence 47999999999999999999999986 9999998654
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0031 Score=63.40 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c---EEECCEEEEcccCccChhhh
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R---TLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~---~~~~D~vi~a~G~~p~~~~~ 268 (434)
.++....++.+++++.++.|.+|.. +++++.+|++.++ . .+.++.||+|.|.--...++
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 3444444567899999999999987 3677788877443 2 35789999999964444443
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0042 Score=62.68 Aligned_cols=34 Identities=18% Similarity=0.557 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+||||||.||+.+|.+|++ ..+ |+|||+...
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~---VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFS---VLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 5999999999999999999999 455 999999863
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.052 Score=54.75 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=37.5
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|||-
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 34445566789999999999987644444766653 4564 5789999999994
|
|
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.018 Score=54.58 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+|.|.+.++.|.+.+++...
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 47999999999999999999999988887654
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.06 Score=54.67 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCc--EEECCEEEEcccC
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+.+++.||+++.++.+.++.. +++++.++. ..+|+ .+.++.||+|+|-
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 3445556677899999999999876 367766664 34564 5889999999995
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0013 Score=55.13 Aligned_cols=35 Identities=31% Similarity=0.283 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.||||+|+|.+||+||+.+.++. ++.+|++||.+-
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~r-PdlkvaIIE~SV 111 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNR-PDLKVAIIESSV 111 (328)
T ss_pred cceEEECCCccccceeeeeeccC-CCceEEEEEeee
Confidence 59999999999999999999764 467799999874
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.055 Score=51.81 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=63.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCc--------------------c----CCHHHHHHH-----
Q 013914 164 GKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPR--------------------L----FTADIAAFY----- 211 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~~~~~~~--------------------~----~~~~~~~~~----- 211 (434)
.+|+|||+|++|+.+|..|.+.- ..++++++.+.+... . .+.++.+++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998752 228888776443110 0 011222222
Q ss_pred -----------------------------HHHHHhcC---cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 212 -----------------------------EGYYANKG---IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 212 -----------------------------~~~l~~~G---V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
..++++.. |.++ .++...+....++....+...+|....||.+|+||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 22333322 3333 33344454434566677888999999999999999
Q ss_pred cCccChh
Q 013914 260 GGRPLIS 266 (434)
Q Consensus 260 G~~p~~~ 266 (434)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9765443
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.027 Score=52.64 Aligned_cols=34 Identities=38% Similarity=0.547 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.+|+|||||..|+-.|..|.+.|.+|.+++....
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5899999999999999999999999999987543
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.086 Score=53.58 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~ 195 (434)
.|+|||+|..|+-+|..+++.| .+|.++++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 6999999999999999999988 799998764
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.12 Score=52.63 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEe---CCCc--EEECCEEEEcccCc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKL---KDGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+++.||+++.++.+.++..+++ |++.++.. .+|+ .+.++.||+|||--
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCC
Confidence 34455566778999999999999876432 77777754 3554 57899999999953
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.09 Score=53.88 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999998765
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=55.19 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=0.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|+|||.|++|+++|+.|.++|.+ |+++|++.... .......++..|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~---V~~~D~~~~~~------------------------------~~~~~~~l~~~g 48 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWE---VVVSDRNDSPE------------------------------LLERQQELEQEG 48 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCE---EEEECCCCchh------------------------------hHHHHHHHHHcC
Q ss_pred cEEEcCCeeE------EEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 87 IELILSTEIV------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 87 v~~~~~~~v~------~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
+.+..+.... . .-.+|.+|+.+|..+..|. +.-....++-.....+-..+...
T Consensus 49 i~~~~g~~~~~~~~~~~--------------~~~~d~vv~s~gi~~~~~~---~~~a~~~~i~v~~~~~~~~~~~~---- 107 (459)
T PRK02705 49 ITVKLGKPLELESFQPW--------------LDQPDLVVVSPGIPWDHPT---LVELRERGIEVIGEIELAWRALK---- 107 (459)
T ss_pred CEEEECCccchhhhhHH--------------hhcCCEEEECCCCCCCCHH---HHHHHHcCCcEEEhHHHHHHhhc----
Q ss_pred CCCCcEEEECCC---HHHHHHHHHHHhCCCeEEE
Q 013914 161 KKNGKAVVVGGG---YIGLELSAALKINNIDVSM 191 (434)
Q Consensus 161 ~~~~~v~ViG~g---~~~~e~a~~l~~~g~~v~l 191 (434)
..+.+.|-|+- -+.--++..|...|.+...
T Consensus 108 -~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~ 140 (459)
T PRK02705 108 -HIPWVGITGTNGKTTVTALLAHILQAAGLNAPA 140 (459)
T ss_pred -CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEE
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.025 Score=59.31 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~ 197 (434)
+|+|||+|+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998765
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.015 Score=55.89 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCccCCHHHHHHHHHHHHhcCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLFTADIAAFYEGYYANKGI 220 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~~~~~~~~~~~~~~~~l~~~GV 220 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++. +.+.+......+...-.+.|++.|+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 357999999999999999999999999999997 3444432233445556677888887
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.013 Score=54.48 Aligned_cols=102 Identities=15% Similarity=0.196 Sum_probs=67.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CCCcE-EEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGEL-AIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V-~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+..|-|||+|+-|--.|+.|.+.-. ...+| .|++..-. . . .-+|.+- .....+.+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n----m---~---------kiLPeyl-------s~wt~eki 403 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN----M---E---------KILPEYL-------SQWTIEKI 403 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC----h---h---------hhhHHHH-------HHHHHHHH
Confidence 4679999999999999999987621 22233 34544311 0 0 0011110 01223456
Q ss_pred hhcCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 83 KEKGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
++.||.++.+..|.++....+. +.+.||.+++.|.+|+|+|..|+..
T Consensus 404 r~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 404 RKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred HhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 6789999998888777665544 5678999999999999999998743
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.08 Score=52.88 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=25.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
..|+|||+|..|+-+|..+.+ |.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 478999999999999988876 7888887764
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.14 Score=52.83 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEccc
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVG 260 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G 260 (434)
+.+++.||+++.++.+.++.. ++|++.++.. .+|+ .+.++.||+|||
T Consensus 166 ~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 166 NEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 445667899999999999886 4677767654 3564 467999999999
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.23 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 368999999999999999999999999987765
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.034 Score=52.27 Aligned_cols=102 Identities=22% Similarity=0.359 Sum_probs=61.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc--CCccC--------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC--MPRLF-------------------------------------- 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~--~~~~~-------------------------------------- 203 (434)
.++.||.|+..+-+|..+.+.+ .++.++++.+.+ .+.++
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998887 788888876543 11110
Q ss_pred ----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cEEEEEeC----CCcEEECCEEEEcccCccChh
Q 013914 204 ----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EVKEVKLK----DGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 204 ----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g--~v~~v~~~----~g~~~~~D~vi~a~G~~p~~~ 266 (434)
-.+..+++.-..++..-.+.++.+|++|....++ ....|.+. +++.+.|+.||+++|..|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 0133455555555666558889999999874443 34566662 346899999999999888764
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.019 Score=55.44 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
+.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 5689999999999999999999999999999987654
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.084 Score=53.21 Aligned_cols=44 Identities=27% Similarity=0.485 Sum_probs=31.3
Q ss_pred cCcEEEcCCeEEEEEecC-CCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013914 218 KGIKIIKGTVAVGFTTNA-DGEVKEVKL-KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~-~g~v~~v~~-~~g~--~~~~D~vi~a~G~ 261 (434)
.||+++.++.+.++..++ +|++.++.. .+|+ .+.++.||+|||-
T Consensus 148 ~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 148 PNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred CCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 378888888888876533 367777654 3453 3789999999995
|
|
| >TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.12 Score=48.91 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCeEEEEccCCccCCcc-CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECC
Q 013914 176 LELSAALKINNIDVSMVYPEPWCMPRL-FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEAD 253 (434)
Q Consensus 176 ~e~a~~l~~~g~~v~lv~~~~~~~~~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D 253 (434)
-++...+.+.|.... .++..++.|.. -..++.+.+...+++.||+++++++|++|+. ++ ..+.+.++ ..+.+|
T Consensus 57 ~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~--~~--~~v~~~~~~~~~~a~ 131 (376)
T TIGR03862 57 VALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG--GT--LRFETPDGQSTIEAD 131 (376)
T ss_pred HHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC--Cc--EEEEECCCceEEecC
Confidence 456677888887643 44555666532 3568889999999999999999999999932 33 45666443 469999
Q ss_pred EEEEcccCcc
Q 013914 254 IVVVGVGGRP 263 (434)
Q Consensus 254 ~vi~a~G~~p 263 (434)
.||+|+|-.+
T Consensus 132 ~vIlAtGG~s 141 (376)
T TIGR03862 132 AVVLALGGAS 141 (376)
T ss_pred EEEEcCCCcc
Confidence 9999999643
|
This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown. |
| >TIGR02352 thiamin_ThiO glycine oxidase ThiO | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.071 Score=50.06 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+..+...+.+.+++.|++++.+++|+++.. .++.+..|.+.+| ++.+|.||+|+|.
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~ 191 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGA 191 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCCh
Confidence 678888999999999999999999999986 4555667787777 7999999999994
|
This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. |
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.021 Score=54.54 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
++|+|||+|+.|+++|..|++.|.+|++++..+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 58999999999999999999999999999976554
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.099 Score=51.38 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|..+.+.++|+|+|..|+++|..|++.|.+ |++.|++.
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~---V~~~d~~~ 38 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGAN---VTVNDGKP 38 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCE---EEEEcCCC
Confidence 555567899999999999999999999986 88888653
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.092 Score=42.91 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=54.8
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|+|+|.+|.-+|..|.+.|.+|+++.+.+ ..+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~--------------~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP--------------RLEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH--------------HHHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc--------------cHHhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999997642 11337888998877662122211 11121
Q ss_pred CC--cEEECCEEEEcccCccChhhhh
Q 013914 246 DG--RTLEADIVVVGVGGRPLISLFK 269 (434)
Q Consensus 246 ~g--~~~~~D~vi~a~G~~p~~~~~~ 269 (434)
.. ..-.+|.|++|+=.....+.++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 11 2345899999987655555444
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.16 Score=51.65 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
-.|+|||+|..|+-.|..+++.| +|.++++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 78888764
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.23 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=26.7
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~ 195 (434)
.|+|||+|..|+-+|..+++. |.+|+++++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 589999999999999999876 4789988775
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.26 Score=50.05 Aligned_cols=43 Identities=30% Similarity=0.388 Sum_probs=31.5
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
.+|+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|-
T Consensus 146 ~~i~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 146 PQIMRYDEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred CCCEEEeCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 3678888888888776 3677776643 4563 5789999999994
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.016 Score=50.56 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=57.7
Q ss_pred EEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcE----------EE--cCCeEEEE
Q 013914 166 AVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK----------II--KGTVAVGF 231 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~----------~~--~~~~v~~i 231 (434)
.+|||||..|+.+|..|+.+ ..++.++..++-+-.- .-.+.+-+.+++..|+ +. .+ .|..+
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksv----tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~ 76 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSV----TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTW 76 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHH----hhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhh
Confidence 58999999999999999876 4577777765433211 1112223333333332 11 01 13333
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.. ....+.+.+|.++.++.+++|+|.+|-.
T Consensus 77 ~s----~ehci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 77 DS----SEHCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred cc----ccceEEecCCceeeEEEEEEecCCCcce
Confidence 22 2247889999999999999999999864
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.15 Score=50.09 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|....++++|+|.|.+|+++|..|+++|.+ |++.|..+
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~---v~~~d~~~ 38 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAE---VAAYDAEL 38 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCC
Confidence 444467899999999999999999999986 89988764
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.025 Score=55.80 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~ 201 (434)
..++|+|||+|.+|+-+|..|.+.|.+|++++.++++..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4679999999999999999999999999999998887544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 434 | ||||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 3e-34 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 2e-33 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 3e-25 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 3e-25 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 5e-22 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 7e-22 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 1e-19 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 1e-16 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 1e-16 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 1e-16 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 6e-16 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 8e-16 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 2e-12 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 5e-11 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-10 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-10 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 1e-10 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 1e-10 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 1e-10 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 2e-10 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 5e-10 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 1e-09 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 3e-09 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 5e-09 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 9e-08 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 1e-07 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 2e-07 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 3e-07 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 6e-07 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 8e-07 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 3e-06 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 5e-06 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 5e-06 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-05 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 2e-05 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 3e-05 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 3e-05 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 5e-05 | ||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 1e-04 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 2e-04 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 4e-04 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 4e-04 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 4e-04 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 4e-04 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 4e-04 | ||
| 3kd9_A | 449 | Crystal Structure Of Pyridine Nucleotide Disulfide | 6e-04 |
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide Oxidoreductase From Pyrococcus Horikoshii Length = 449 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 434 | |||
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 1e-110 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 4e-94 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 6e-94 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 4e-93 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 4e-92 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 6e-92 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 5e-62 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 2e-61 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 3e-54 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 4e-54 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 8e-54 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 2e-52 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 5e-50 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 5e-50 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 3e-49 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 2e-48 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 3e-48 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 7e-47 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 4e-46 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 5e-23 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 2e-22 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 5e-22 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 2e-21 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 2e-21 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 2e-21 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 5e-21 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 2e-20 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 3e-20 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 2e-19 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 3e-19 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 3e-19 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 2e-18 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 3e-18 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 7e-18 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 2e-17 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 2e-17 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 5e-17 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 3e-05 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 7e-17 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 7e-17 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 9e-17 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 1e-16 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 2e-16 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 4e-16 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 5e-16 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 5e-16 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 7e-16 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 1e-15 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 3e-15 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 9e-15 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 1e-14 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 1e-14 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 1e-13 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 2e-13 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 8e-13 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 1e-09 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 4e-04 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 2e-09 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 3e-09 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 3e-09 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 4e-09 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 1e-08 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 2e-08 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 2e-07 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 3e-07 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 4e-07 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 1e-06 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 2e-06 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 2e-06 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 3e-05 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 9e-05 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 6e-04 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 8e-04 |
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 333 bits (855), Expect = e-110
Identities = 101/451 (22%), Positives = 176/451 (39%), Gaps = 34/451 (7%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
A ++++GGG +A AAR + + I+S++ PY RP LSK F +
Sbjct: 8 APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 66
Query: 62 RLPGFHVCVGSGGERLL----PEWY---------KEKGIELILSTEIVRADIASKTLLSA 108
+G ER + P +Y + G+ ++ ++V+ D+ +
Sbjct: 67 VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126
Query: 109 TGLIFKYQILVIATGSTVLRLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAV 167
G Y+ +IATG T L+ GA+ K R+I D L + + K
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SIT 184
Query: 168 VVGGGYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
++GGG++G EL+ AL +V ++PE M ++ ++ + +G+K++
Sbjct: 185 IIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244
Query: 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGGIE 280
+ +KLKDGR +E D +V VG P + L K ++ + GG
Sbjct: 245 PNAIVQSVG--VSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFR 302
Query: 281 TDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340
+ + +++ GD A F RRVEH DHA S A + + G
Sbjct: 303 VNAELQAR-SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMT----GAAKP- 355
Query: 341 YDYLPYFYSRAF-DLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399
Y + F+S D+ ++ G G A+A + + G + E+
Sbjct: 356 YWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESETE 415
Query: 400 TPEENKAIAKVARVQPSVESLDVLKNEGLSF 430
+ I P +G+ F
Sbjct: 416 SEASEITIPPSTPAVPQAPVQGEDYGKGVIF 446
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 4e-94
Identities = 104/393 (26%), Positives = 176/393 (44%), Gaps = 31/393 (7%)
Query: 8 YVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
VI+G G++ A G + G + ++ V P+ P LSKAYL + TA
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATA------ 59
Query: 68 VCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124
E L P+ Y + I+L+ T++ + + ++ + G Y LV+ATG
Sbjct: 60 -------ESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGG 112
Query: 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI 184
L A N YLR ++DA+ + + A VV+GGGYIGLE++A
Sbjct: 113 RPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNR--LVVIGGGYIGLEVAATAIK 170
Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVK 243
N+ V+++ + R+ ++AFYE + G+ I GT GF + +V V
Sbjct: 171 ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL 230
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+DG L AD+V+ G+G P L + GI ++ +TS + AVGD A F
Sbjct: 231 CEDGTRLPADLVIAGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHS 290
Query: 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363
+LY R+E V +A + A + + + P+F+S +++ + G +
Sbjct: 291 QLYDRWVRIESVPNALEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSE 345
Query: 364 GD--TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
G ++ G A F ++++ +V+ V
Sbjct: 346 GYDRIIVRGS----LAQPDFSVFYLQGDRVLAV 374
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 287 bits (738), Expect = 6e-94
Identities = 100/387 (25%), Positives = 171/387 (44%), Gaps = 33/387 (8%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 11 VVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFM------------- 56
Query: 69 CVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128
E++ + + +E +L D + T+ + G Y LV+ATG+
Sbjct: 57 -AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA 115
Query: 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID 188
L + LR ++DA ++ ++ + + ++VGGG IGLEL+A + +
Sbjct: 116 LP---TLQGATMPVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVH 170
Query: 189 VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR 248
VS+V +P M R A +A F Y+A +G+ + G V L DG
Sbjct: 171 VSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGV------VLLDDGT 224
Query: 249 TLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308
+ AD+VVVG+G +L + GI D + +T+ DVYA+GDV L
Sbjct: 225 RIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGR 284
Query: 309 MRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-DTV 367
R+E +A+ + ++ T GY LP+++S L Q G G + +
Sbjct: 285 FERIETWSNAQNQGIAVARHLV----DPTAPGYAELPWYWSDQGALRIQVAGLASGDEEI 340
Query: 368 LFGDNDLASATHKFGTYWIKDGKVVGV 394
+ G+ L + KF ++ G++VG
Sbjct: 341 VRGEVSLDA--PKFTLIELQKGRIVGA 365
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 4e-93
Identities = 92/390 (23%), Positives = 165/390 (42%), Gaps = 35/390 (8%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
I+G GV A+ +G + G +++I E PY+RP+LSKA L
Sbjct: 6 AIIGNGVGGFTTAQALRAEGFE-GRISLIGDEPHLPYDRPSLSKAVLDGSLER------- 57
Query: 69 CVGSGGERLL--PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
+L +WY E I+++ E+ D+ ++T+ G +VIATGS
Sbjct: 58 ------PPILAEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111
Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINN 186
+ + G+ + LR D L ++ + + ++VGGG IG E++ +
Sbjct: 112 RTMA---LPGSQLPGVVTLRTYGDVQVLRDSWTSAT--RLLIVGGGLIGCEVATTARKLG 166
Query: 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD 246
+ V+++ + R+ I A+ G G+++ GT VGF+ +G++++V D
Sbjct: 167 LSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASD 224
Query: 247 GRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306
GR+ AD ++ VG P L + G+ D T A V+AVGDVA++P++
Sbjct: 225 GRSFVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLRAG 284
Query: 307 REMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD- 365
+E +A++ A I+ LP ++ Q GD G
Sbjct: 285 GRR-SLETYMNAQRQAAAVAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPG 338
Query: 366 -TVLFGDNDLASATHKFGTYWIKDGKVVGV 394
V G + + +++ ++ V
Sbjct: 339 DFVSRGM----PGSGAALLFRLQERRIQAV 364
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 4e-92
Identities = 123/400 (30%), Positives = 191/400 (47%), Gaps = 34/400 (8%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGT 60
+ + VI+G G AA + G + G + +I +E PYERP LSK YL E T
Sbjct: 5 VQAERADVVIVGAGHGGAQAAIALRQNGFE-GRVLVIGREPEIPYERPPLSKEYLAREKT 63
Query: 61 ARLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
ER+ +++++K +E+ L E+V D A+ T+ G +Y
Sbjct: 64 F-------------ERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGK 110
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
L+ ATG RL+ GAD + +R +DAD+L+ + A AVV+GGGYIGLE
Sbjct: 111 LIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDAGAK-NAVVIGGGYIGLE 166
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+A L ++V+++ P + R+ ++ FY+ + G+ + G +
Sbjct: 167 AAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GT 225
Query: 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
+V V+++DG + ADIV+VG+G P + A G++ D+F +TS DVYA+GD
Sbjct: 226 KVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGD 285
Query: 298 VATFPMKLYR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSW 356
A + R+E V +A A A K I Y P+F+S +DL
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAP-----VPYKATPWFWSNQYDLKL 340
Query: 357 QFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
Q G + G + VL GD AT F ++K GKVV +
Sbjct: 341 QTVGLSTGHDNAVLRGD----PATRSFSVVYLKGGKVVAL 376
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 6e-92
Identities = 115/391 (29%), Positives = 177/391 (45%), Gaps = 35/391 (8%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
+I G G + A + G +A+I+ E PY+RP LSKAYL G
Sbjct: 5 LIAGAGHAGFQVAVSLRQAKYP-GRIALINDEKHLPYQRPPLSKAYLKSGGDP------- 56
Query: 69 CVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST 125
L+ ++++++ IEL +S +V D + LL A+G +Y LV+ATG+
Sbjct: 57 ------NSLMFRPEKFFQDQAIEL-ISDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR 109
Query: 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN 185
L V A ++ YLR +D+++ L + + KK+ VV+G G+IGLE +A +
Sbjct: 110 NRMLD---VPNASLPDVLYLRTLDESEVLRQRMPDKKH--VVVIGAGFIGLEFAATARAK 164
Query: 186 NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245
++V +V P M R+ T +I++++ ++ GI++ G A V V L
Sbjct: 165 GLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVLS 223
Query: 246 DGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
DG TL D+VVVGVG P + + GI D TS + A+GD A F
Sbjct: 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVR 283
Query: 306 YREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG- 364
+ E RVE V +A A + YD P+F+S D Q G G
Sbjct: 284 FGETMRVESVQNATDQARCVAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGF 338
Query: 365 -DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
V+ G A F + K GK++G+
Sbjct: 339 DQVVIRGS----VAERSFSAFCYKAGKLIGI 365
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 5e-62
Identities = 78/353 (22%), Positives = 134/353 (37%), Gaps = 47/353 (13%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYL---FP 57
M+E++ VI+G G++ ARE+ K L +I+ + Y +P LS +
Sbjct: 1 MSERA-PLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFSKNKDA 58
Query: 58 EGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQI 117
+G A ++ ++ T + D + + + +Y+
Sbjct: 59 DGLAMAEP-------------GAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRD 104
Query: 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
LV+A G+ +R+ VEG ++ + +++D + +A K+ + +++G G IG E
Sbjct: 105 LVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAAGKR--RVLLLGAGLIGCE 159
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+ L + +V P MP L A + G++ G V G
Sbjct: 160 FANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLK--KAG 217
Query: 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKG-----GIETDDFFKTSADDV 292
E E L DG + D+VV VG RP L A G GI D +TS ++
Sbjct: 218 EGLEAHLSDGEVIPCDLVVSAVGLRPRTEL-----AFAAGLAVNRGIVVDRSLRTSHANI 272
Query: 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLP 345
YA+GD A +V A +T+ + Y P
Sbjct: 273 YALGDCAEVDGLNL------LYVMPLMACARALAQTLAGNP-----SQVAYGP 314
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 2e-61
Identities = 96/400 (24%), Positives = 164/400 (41%), Gaps = 58/400 (14%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
KS K +ILG G + AA+ + ++ +I+ E PY RP L++ + +
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGKC---DDITMINSEKYLPYYRPRLNE-IIAKNKSI 61
Query: 62 RLPGFHVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL 118
+ +L +WY++ I++I S D +K + +G KY+ L
Sbjct: 62 -------------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKL 108
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
+IA+GS ++ V AD IF L DDA K+ + K GKA ++GGG +G+EL
Sbjct: 109 IIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDE--CKNKGKAFIIGGGILGIEL 161
Query: 179 SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238
+ A+ + S+ + + R D F + GIKI +
Sbjct: 162 AQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNS-----------N 210
Query: 239 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDV 298
+E+ G + + V+ VG +P + K +K GI +D +TS D+YA GDV
Sbjct: 211 FEEM----GDLIRSSCVITAVGVKPNLDFIKDTEIASKRGILVNDHMETSIKDIYACGDV 266
Query: 299 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF 358
A F K ++ A K E A G+ + + +P + +S
Sbjct: 267 AEFYGKNPG------LINIANKQGEVAGLNAC----GEDASYSEIIPSPILKVSGISIIS 316
Query: 359 YGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFL 396
GD + +F + K+ +K+ K+ +
Sbjct: 317 CGDIENNKPSKVFRS----TQEDKYIVCMLKENKIDAAAV 352
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 3e-54
Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 12/226 (5%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFKYQILVIATGSTVLRLTDFGVE 135
E + + I+L+L+ E+V D+ ++ + + Y L++ATG++ +
Sbjct: 65 EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFST---QIR 121
Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
G+ + + + + A V ++ + V+G G IG+E L V +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQ--TVAVIGAGPIGMEAIDFLVKMKKTVHVFESL 179
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255
+P+ F ++ A + + + +G A+G V + + D
Sbjct: 180 ENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANG---IVLETSEQEISCDSG 236
Query: 256 VVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
+ + P ++ ++ N I D + +TS +V+A+GD +
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCIS 282
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 4e-54
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 12/228 (5%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 133
E + +G+ + +TEI + +G Y L+I+ G+ L
Sbjct: 63 GEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL---D 119
Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
+ G D NI+ +R A KL + + VV+G GYIG+E + A V+++
Sbjct: 120 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+ + I I G + DG V++V + D +AD
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 236
Query: 254 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
+VVV VG RP + KG + + G I+TD++ +TS DV+AVGD
Sbjct: 237 LVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 182 bits (465), Expect = 8e-54
Identities = 77/303 (25%), Positives = 135/303 (44%), Gaps = 38/303 (12%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
K VI+G G A++ ++ E+ +I KE V Y +P LS Y+
Sbjct: 10 KVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAGFIPR----- 59
Query: 67 HVCVGSGGERLL---PEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123
RL +WY+++GIE+ L+ E D K +++ G + Y LV+ATG
Sbjct: 60 --------NRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATG 110
Query: 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183
+ ++G + + LR I DAD++ E+I+ +A+++GGG+IGLEL+ L
Sbjct: 111 ARAREPQ---IKGKE--YLLTLRTIFDADRIKESIENSG--EAIIIGGGFIGLELAGNLA 163
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
V +++ + +++ + G+K + + +E
Sbjct: 164 EAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGV 214
Query: 244 LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
L + +E + + +G P + L + GI DD F+TSA DVYA+GD A +
Sbjct: 215 LTNSGFIEGKVKICAIGIVPNVDLARRSGIHTGRGILIDDNFRTSAKDVYAIGDCAEYSG 274
Query: 304 KLY 306
+
Sbjct: 275 IIA 277
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-52
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 13/228 (5%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDFG 133
PE G + + ++ D +KT+ T Y L++ TGS
Sbjct: 65 PEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP--- 121
Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
+ G D+ ++ + +DA KL E K ++G GYIG EL+ A N +V+++
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAK--TITIIGSGYIGAELAEAYSNQNYNVNLID 179
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+ + F + Y G+ ++ G+ F D E+ DG+ +++D
Sbjct: 180 GHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITK-TLDGKEIKSD 237
Query: 254 IVVVGVGGRPLISLFKGQVAEN-KGGIETDDFFKTSADDVYAVGDVAT 300
I ++ +G RP L KG+VA G I TD++ +S D++A GD A
Sbjct: 238 IAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAA 285
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 5e-50
Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 14/231 (6%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
PE+++ +E ++ T D A+ T+ TG Y LV+A GS R
Sbjct: 72 PEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRP--- 128
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAAL-KINNIDVSM 191
VEG D + + +D+A+ + AI A + KAV+VGGG+IGLE++ +L + ID ++
Sbjct: 129 PVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 192 VYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251
V MP + ++ + + G V +G+V V + D RTL+
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARV-ITDKRTLD 246
Query: 252 ADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
AD+V++ G P L + E +G I D +TS D++A GD T
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 5e-50
Identities = 53/234 (22%), Positives = 103/234 (44%), Gaps = 15/234 (6%)
Query: 79 PEWYKEKGIELILSTEIVRADIASKTLL-SATGLIFK--YQILVIATGSTVLRLTDFGVE 135
E + G ++ + + + D +KT+ G Y L+ ATGS + G E
Sbjct: 99 KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAE 158
Query: 136 GA--------DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNI 187
+N+ +++ ++ ++ ++ K + VVG GYIG+EL+ A +
Sbjct: 159 IKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGK 218
Query: 188 DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG 247
+V ++ C+ + D+ GI++ G +G+V+++ + D
Sbjct: 219 EVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVA--GNGKVEKI-ITDK 275
Query: 248 RTLEADIVVVGVGGRPLISLFKGQVAENK-GGIETDDFFKTSADDVYAVGDVAT 300
+ D+V++ VG RP +L G++ + G + +TS VYA+GD AT
Sbjct: 276 NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCAT 329
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 172 bits (438), Expect = 3e-49
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 13/227 (5%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLLSATGLIFK--YQILVIATGSTVLRLTDFGVE 135
PE + +K GI+L L+ E++ D + G + LV A G++ +E
Sbjct: 65 PEVFIKKRGIDLHLNAEVIEVDTGYVRVR-ENGGEKSYEWDYLVFANGASPQVP---AIE 120
Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
G + K +F DA + E ++ K V++GGGYIG+E++ A +V+M+
Sbjct: 121 GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRG 180
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIV 255
+ R F ++ E K + + + + + V++V D +A++V
Sbjct: 181 ERVLRRSFDKEVTDILEEKL-KKHVNLRLQEITMKIE--GEERVEKVVT-DAGEYKAELV 236
Query: 256 VVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
++ G +P I L K G I T++ +TS ++VYA GDVA
Sbjct: 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 2e-48
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
+ +++K GI+ + E+ + D K + + T +F+ Y L+IATG +
Sbjct: 99 VKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP--- 155
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
EG D + + L+ I DA+++++ ++ K ++GGG IGLE++ V M+
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 252
++ D+A + I+I+ F + V+ V+ D T +A
Sbjct: 216 ERNDHIGT-IYDGDMAEYIYKEADKHHIEILTNENVKAFK--GNERVEAVET-DKGTYKA 271
Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
D+V+V VG +P +G +KG IE + + +T+ DVYA GD AT
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 3e-48
Identities = 58/230 (25%), Positives = 116/230 (50%), Gaps = 15/230 (6%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
E ++ +++ + +E+V+ + KT+ T + Y +L+++ G+ + +
Sbjct: 99 VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIP 158
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
G+E +AK +F LR + D D++ I KK A V+GGG+IG+E+ L+ I+V++V
Sbjct: 159 GIE--EAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 252
MP ++AA+ + N ++++ + V+LK G ++
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDAL----EENGAVVRLKSGSVIQT 271
Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
D++++ +G +P SL KG +G I+ ++ F+TS +YA+GD
Sbjct: 272 DMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIE 321
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 7e-47
Identities = 59/247 (23%), Positives = 105/247 (42%), Gaps = 29/247 (11%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
PE +K + +E+ + E+V D A+K + G ++ Y L+++ G+ +
Sbjct: 64 PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP--- 120
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
+ G D LR I D D++++ I+ A VVGGG+IGLE+ +L I +++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK------------ 240
M ++A F ++G+ + GT + V
Sbjct: 181 ELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQH 239
Query: 241 -----EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVY 293
+ L +G LE D++++ +G RP L + GGI+ + +TS +Y
Sbjct: 240 IKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIY 299
Query: 294 AVGDVAT 300
AVGD
Sbjct: 300 AVGDAVE 306
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 163 bits (416), Expect = 4e-46
Identities = 52/230 (22%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 79 PEWYKEK-GIELILSTEIVRADIASKTLL---SATGLIFK--YQILVIATGSTVLRLTDF 132
PE + ++ I + E++ + +T+ T F+ Y L+++ G++
Sbjct: 64 PEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN----- 118
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
G ++ F LR ++D D + + IKA + K +VVG GY+ LE+ L + +++
Sbjct: 119 -SLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA 252
+ L AD+ + I E+ K G+
Sbjct: 178 HRSDKINK-LMDADMNQPILDELDKREIPYRLNEEINAI------NGNEITFKSGKVEHY 230
Query: 253 DIVVVGVGGRPLISLFKGQVAE--NKGGIETDDFFKTSADDVYAVGDVAT 300
D+++ GVG P + + KG I +D F+T+ ++YA+GD+AT
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 66/375 (17%), Positives = 122/375 (32%), Gaps = 86/375 (22%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
++LGG A AA + ++ +I+K + Y RP P
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRP------ALPH---------- 47
Query: 69 CVGSGGERL------LPEWYKEKGIELILSTEIVRADIASKTLL----SATGLIFKYQIL 118
V G + L E EKGI+ + + D S + + +Y +
Sbjct: 48 -VAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYV 105
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
++ G+ L V+G K + + E + A KL E +++ + G + G +
Sbjct: 106 IVGIGA---HLATELVKGW-DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHN 161
Query: 179 S------------------AALKI--------------NNIDVSMVYPEPWCMPRLFTAD 206
++ + + V++ P + + +
Sbjct: 162 PKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPN 219
Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD--IVVVGVGGRPL 264
Y GIK++ + E+ + G T+ AD I++ G P
Sbjct: 220 SRKAVASIYNQLGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPA 273
Query: 265 ISLFKGQVAENKGGIETDDFFK-TSADDVYAVGDVATFPM-KLYREMRRVEHVDHARKSA 322
+ + ++ G I TD D+VYAVGD + + KL A +
Sbjct: 274 LKNSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKL---------GYLAVMTG 324
Query: 323 EQAVKTIMATEGGKT 337
A + + G T
Sbjct: 325 RIAAQHLANRLGVPT 339
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 97.3 bits (243), Expect = 5e-22
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 24/192 (12%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLEL 178
++ATG++ L D + I R++ D D L + + +VVG G G E
Sbjct: 149 LVATGASPRILPSAQP---DGERILTWRQLYDLDALPDHL--------IVVGSGVTGAEF 197
Query: 179 SAALKINNIDVSMVYPEPWCMPRL---FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235
A + V++V + AD A E +A +G+++ K A T
Sbjct: 198 VDAYTELGVPVTVV--A--SQDHVLPYEDADAALVLEESFAERGVRLFKNARAASVTRTG 253
Query: 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADD 291
G V V + DGRT+E ++ +G P S L + + + D +T A
Sbjct: 254 AG-VL-VTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATG 311
Query: 292 VYAVGDVATFPM 303
+YA GD
Sbjct: 312 IYAAGDCTGLLP 323
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-21
Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 22/222 (9%)
Query: 119 VIATGSTVLRLTDFGVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLE 177
+IA G+ + G+E + F + K++ K +VG GYI +E
Sbjct: 146 LIAVGNKPVFPPVKGIENTISSDEFFNI---------------KESKKIGIVGSGYIAVE 190
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
L +K ID + + + F + E I I+ V +D
Sbjct: 191 LINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDK 249
Query: 238 EVKEVKLKDGRTLE-ADIVVVGVGGRPLIS---LFKGQVAENKGGIETDDFFKTSADDVY 293
+ + L DGR E D V+ VG P L K V N I D+ +TS +++Y
Sbjct: 250 NLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIY 308
Query: 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335
AVGD E + + + + +
Sbjct: 309 AVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYN 350
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-21
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
+ + VGGG+I +E + A K V++ Y + R F I GI
Sbjct: 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGI 250
Query: 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-K 276
+I+ + N DG K V + G+TL+ D+V++ +G P + L V K
Sbjct: 251 EIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK 309
Query: 277 GGIETDDFFKTSADDVYAVGDV 298
GG++ D+F +T+ ++YA+GD+
Sbjct: 310 GGVQVDEFSRTNVPNIYAIGDI 331
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 2e-21
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 164 GKAVVVGGGYIGLELS---AALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
+A+ VGGGYI +E + A K V + Y + R F +++ GI
Sbjct: 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGI 246
Query: 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKG 277
+ T NADG + V + G + D+V++ +G P L K V K
Sbjct: 247 NVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN 305
Query: 278 G-IETDDFFKTSADDVYAVGDV 298
G I+ D + KT+ D++YA+GDV
Sbjct: 306 GAIKVDAYSKTNVDNIYAIGDV 327
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 5e-21
Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 25/221 (11%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE-GADAKN 141
+ +++I A L G ++IATG GVE G D+
Sbjct: 104 GKNNVDVIKG----FARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDG 159
Query: 142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201
F L + + VVG GYIG+EL + + +
Sbjct: 160 FFALPALP--------------ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL-P 204
Query: 202 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261
F I+ +G ++ + N DG + ++L+DGR+ D ++ +G
Sbjct: 205 SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGR 263
Query: 262 RPLIS---LFKGQVAENKGG-IETDDFFKTSADDVYAVGDV 298
P L V N+ G I D + T+ + +YAVGD
Sbjct: 264 EPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDN 304
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-20
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 119 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IATG+ ++ + G + + IF L ++ V+VGGGYIG+
Sbjct: 159 LIATGAKIVSNSAIKGSDLCLTSNEIFDLEKLP--------------KSIVIVGGGYIGV 204
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
E + + ++++ + R F D+ KGI II + +
Sbjct: 205 EFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISIIYEATVSQVQSTEN 263
Query: 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 292
V L +G+T+ AD V++ G P + L + V N+ G + D+ T+ +
Sbjct: 264 C--YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHI 321
Query: 293 YAVGDV 298
+AVGDV
Sbjct: 322 WAVGDV 327
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-20
Identities = 64/342 (18%), Positives = 114/342 (33%), Gaps = 61/342 (17%)
Query: 1 MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL--------- 50
+ + + +GGG +AG + G + I+ + P L
Sbjct: 40 DPRE-YDAIFIGGG-AAGRFGSAYLRAMGGR---QLIVDR-------WPFLGGSCPHNAC 87
Query: 51 --SKAYL----FPEGTARLPGFHVCVGSGGERLLPEWYKEK---------GIELILSTEI 95
+ G + + + + + GI S E
Sbjct: 88 VPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQ 147
Query: 96 V--------RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE 147
+ A + + A G +FK + L++A G+ L GV
Sbjct: 148 LNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPGVNAKG--------- 198
Query: 148 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207
+ D LVE + + VVVGG +E M+ + +
Sbjct: 199 VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNET 257
Query: 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPL 264
A+ +G++II G+ +A+G V+ V +E D V +G+G +P
Sbjct: 258 RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317
Query: 265 ISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ G KG + +++ +TS +VYAVGD+ PM
Sbjct: 318 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 359
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 2e-19
Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 30/227 (13%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQIL-----VIATGSTVLRLTDF-GVE- 135
+++ ++++ A + ++ ++ATG + + G E
Sbjct: 116 EKEKVDVVFG----WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGFEL 171
Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
G D+ F L E K VVVG GYIG+EL+ + +V
Sbjct: 172 GTDSDGFFRLEEQP--------------KKVVVVGAGYIGIELAGVFHGLGSETHLVIRG 217
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADI 254
+ R F I +Y +GI + K + V N + + ++ + D ++++ D
Sbjct: 218 ETVL-RKFDECIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDE 276
Query: 255 VVVGVGGRPLISLF--KGQVAEN-KGGIETDDFFKTSADDVYAVGDV 298
++ +G + + + + N I D++ T+ ++Y++GDV
Sbjct: 277 LIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDV 323
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKI 222
GK +VVG GYIGLE + LK + +++ + R F +A +GI
Sbjct: 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS---IVLRGFDQQMAELVAASMEERGIPF 244
Query: 223 IKGTVAVGFTTNADGEV----KEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN 275
++ TV + DG++ K V+ + D V+ +G + L+ L V
Sbjct: 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQ 304
Query: 276 KGGIETDDFFKTSADDVYAVGDV 298
K I D T+ ++YAVGD+
Sbjct: 305 KDKIPVDSQEATNVANIYAVGDI 327
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 3e-19
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 22/186 (11%)
Query: 119 VIATGSTVLRLTDF-GVE-GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGL 176
VIA G G E + F L + ++ GGGYI +
Sbjct: 138 VIAVGGHPSPHDALPGHELCITSNEAFDLPALP--------------ESILIAGGGYIAV 183
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
E + + +++Y + F D+ KGI+I+ + + +AD
Sbjct: 184 EFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRILCEDIIQSVSADAD 242
Query: 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-IETDDFFKTSADDV 292
G + + AD V++ +G P + L V N+ G I D F +TS +
Sbjct: 243 G-RRVATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGI 301
Query: 293 YAVGDV 298
YA+GDV
Sbjct: 302 YALGDV 307
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
+ ++G GYIG+EL+ L+ +V++V E + F ++A +GI+
Sbjct: 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETH 225
Query: 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAENKGG-I 279
+A G V R D V+ VG P L + G +
Sbjct: 226 LEFAVAALERDAQG-TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMV 284
Query: 280 ETDDFFKTSADDVYAVGDV 298
TD + T+ VYA+GD+
Sbjct: 285 PTDAYQNTNVPGVYALGDI 303
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 40/195 (20%), Positives = 70/195 (35%), Gaps = 32/195 (16%)
Query: 119 VIATGSTVLRLTDFGVEGA---DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIG 175
++ATG++ G++ + + I ++L V+G +
Sbjct: 143 LVATGASPAVPPIPGLKESPYWTSTEALASDTI--PERLA------------VIGSSVVA 188
Query: 176 LELSAALKINNIDVSMVYPEPWCMPRLFT---ADIAAFYEGYYANKGIKIIKGTVAVGFT 232
LEL+ A V+++ LF I + +GI++++ T A
Sbjct: 189 LELAQAFARLGSKVTVL-----ARNTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVA 243
Query: 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 288
V L AD ++V G P ++L V N +G I D +TS
Sbjct: 244 HMDGEFVLTTT---HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS 300
Query: 289 ADDVYAVGDVATFPM 303
++YA GD P
Sbjct: 301 NPNIYAAGDCTDQPQ 315
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 7e-18
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 20/191 (10%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 177
+IATGS+ + G A + Y E I +++ ++ G G IG+E
Sbjct: 139 IIATGSSTRLVP--GTS-LSANVVTY----------EEQILSRELPKSIIIAGAGAIGME 185
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
LK +DV++V P +P AD++ E + G+ I+ T
Sbjct: 186 FGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQ 244
Query: 238 EVKEVKLKDGR-TLEADIVVVGVGGRPLIS---LFKGQVA-ENKGGIETDDFFKTSADDV 292
V L+A+ V+ +G P + L K VA ++ I DD+ +T+ +
Sbjct: 245 VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHI 304
Query: 293 YAVGDVATFPM 303
YA+GDV
Sbjct: 305 YAIGDVNGLLQ 315
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 83.3 bits (207), Expect = 2e-17
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IATGS L V D + + + +A E K + +VVGGG IGL
Sbjct: 134 LIATGSAPLIPPWAQV---DYERV-----VTSTEALSFPEVPK-----RLIVVGGGVIGL 180
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
EL +V ++ +P +++ E + +G+ I G A
Sbjct: 181 ELGVVWHRLGAEVIVLEYMDRILP-TMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAK 239
Query: 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFKTSA 289
G + V+L+ G LEAD V+V VG RP +G EN +G I D+ +T
Sbjct: 240 G-AR-VELEGGEVLEADRVLVAVGRRPYT---EGLSLENAGLSTDERGRIPVDEHLRTRV 294
Query: 290 DDVYAVGDVATFPM 303
+YA+GDV PM
Sbjct: 295 PHIYAIGDVVRGPM 308
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 49/195 (25%), Positives = 76/195 (38%), Gaps = 34/195 (17%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
VIATG T V+GA I F+L+E GK +VVG Y
Sbjct: 152 VIATGGRPRYPTQ--VKGALEYGITSDDIFWLKESP--------------GKTLVVGASY 195
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233
+ LE + L +D +++ R F +++ + + G + +KG V
Sbjct: 196 VALECAGFLTGIGLDTTVMMRSI--PLRGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKK 253
Query: 234 NADGEVKEVKLKDG-----RTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGG-IETDD 283
+++ V +D T D V+ +G P L K ++ N K I D
Sbjct: 254 LPTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA 312
Query: 284 FFKTSADDVYAVGDV 298
TS +YA+GDV
Sbjct: 313 QEATSVPHIYAIGDV 327
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 60/369 (16%), Positives = 109/369 (29%), Gaps = 61/369 (16%)
Query: 9 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHV 68
VILG G AA E + E+ +IS Y + F P
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISA---NDY--------FQFV------PSNPW 50
Query: 69 CVGSGG------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIAT 122
VG G + + + KGI I + D ++ + A G Y L+IAT
Sbjct: 51 -VGVGWKERDDIAFPIRHYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIAT 108
Query: 123 GSTVLRLTDFGVEGAD--AKNIFYLREIDDADKLVEAIKA-KKNGKAVVVGGGYIGLELS 179
G +L V G+D + + +D A++ +A + +V+G G
Sbjct: 109 G---PKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAM-AGASCF 164
Query: 180 -AALKI---------------NNIDVSMVYPEPWCMPRL--FTADIAAFYEGYYANKGIK 221
A + + + EP+ D +GI+
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224
Query: 222 IIKGTVAVGFTTN---ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 278
N ++ + L ++ + + ++ + N GG
Sbjct: 225 AYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGG 284
Query: 279 -IETDDFFK-TSADDVYAVGDVATFPMKLYREMRRVE----HVDHARKSAEQAVKTIMAT 332
+ D+ + +++A G P + ++ AV I A
Sbjct: 285 FVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYM--IESMVSAAVHNIKAD 342
Query: 333 EGGKTVTGY 341
G+
Sbjct: 343 LEGRKGEQT 351
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 57/196 (29%)
Query: 161 KKNGKAVVVGGGYIGLELSAALK---INNIDVSMVYPEPW-------------CMPRLFT 204
+ + V++G G G+ + +K + +V+++ + R
Sbjct: 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKER--- 58
Query: 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264
DIA Y KGI I + D E + + L DG T+ D +++ G +
Sbjct: 59 DDIAFPIRHYVERKGIHFIAQSA-EQI----DAEAQNITLADGNTVHYDYLMIATGPKLA 113
Query: 265 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324
G ++G +++ + V+H + A +
Sbjct: 114 FENVPG-SDPHEGPVQS----------IC-----------------TVDHAERAFAEYQA 145
Query: 325 AVKTIMATEGGKTVTG 340
++ E G V G
Sbjct: 146 LLR-----EPGPIVIG 156
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 19/191 (9%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN-GKAVVVGGGYIGLE 177
+IA+G+ +L GVE + D +K V++G GYIGLE
Sbjct: 137 IIASGAETAKLRLPGVE----------YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLE 186
Query: 178 LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237
+++ ++ + ++ + L DI + + I + D
Sbjct: 187 IASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLL---SILKLNIKFNSPVTEVKKIKDD 243
Query: 238 EVKEVK-LKDG--RTLEADIVVVGVGGRPLIS--LFKGQVAENKGGIETDDFFKTSADDV 292
E + + KDG +++ + VV+ G RP+I + ++ +K GI D+ KT+ +V
Sbjct: 244 EYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNV 303
Query: 293 YAVGDVATFPM 303
+A GD
Sbjct: 304 FATGDANGLAP 314
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 7e-17
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 119 VIATGSTVLRLTDFGVEGA----DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 174
+IATG + + GA + F L E+ G++V+VG GYI
Sbjct: 153 LIATGGMPSTPHESQIPGASLGITSDGFFQLEELP--------------GRSVIVGAGYI 198
Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
+E++ L S++ + R F + I+ N G++++K +
Sbjct: 199 AVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKKT 257
Query: 235 ADG-------EVKEVKLKDGRTLEADIVVVGVGGRPLIS---LFKGQVAEN-KGGIETDD 283
G V + D ++ +G P L K + + KG I D+
Sbjct: 258 LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDE 317
Query: 284 FFKTSADDVYAVGDV 298
F T+ +YAVGDV
Sbjct: 318 FQNTNVKGIYAVGDV 332
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 9e-17
Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 94 EIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DA 151
+ D T+ L K I +ATGS V + D + I + A
Sbjct: 127 RVTPVDGLEGTVKEDHILDVKNII--VATGSEVTPFPGIEI---DEEKI-----VSSTGA 176
Query: 152 DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
L E K + ++GGG IGLE+ + V++V +P ++A
Sbjct: 177 LSLKEIPK-----RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKAT 230
Query: 212 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRP--- 263
+ + +G+ T + N D V E+ ++D + LEA++++V VG RP
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290
Query: 264 LISLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ K + + +G + DD F + + VGDV PM
Sbjct: 291 GLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IATGS V + D I + A L + + K VV+G G IG+
Sbjct: 145 LIATGSEVTPFPGITI---DEDTI-----VSSTGALSLKKVPE-----KMVVIGAGVIGV 191
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
EL + + DV+ V +I+ ++ +G K T G T +D
Sbjct: 192 ELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSD 251
Query: 237 GEVK-EVKLKDG---RTLEADIVVVGVGGRP---LISLFKGQVAEN-KGGIETDDFFKTS 288
G++ ++ G + D+++V +G RP + L + + + +G I + F+T
Sbjct: 252 GKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTK 311
Query: 289 ADDVYAVGDVATFPM 303
++YA+GDV PM
Sbjct: 312 IPNIYAIGDVVAGPM 326
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 22/212 (10%)
Query: 97 RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKL 154
A + + G + + L++ATGS+ + L + G I +A
Sbjct: 117 WAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLPLGG---------PVISSTEALAP 167
Query: 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214
+ VVVGGGYIGLEL A + VS+V +P + +++ A
Sbjct: 168 KALPQ-----HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAES 221
Query: 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQ 271
GI + G G + LEAD V+V VG RP +L
Sbjct: 222 LKKLGIALHLGHSVEG--YENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLD 279
Query: 272 VAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ N I D+ +TS +V+A+GDVA PM
Sbjct: 280 LKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM 311
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 4e-16
Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 29/219 (13%)
Query: 97 RADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV- 155
A + + G + + L++ATGS L L F + +
Sbjct: 114 FARLVGPKEVEVGGERYGAKSLILATGSEPLELKGF--------------PFGE--DVWD 157
Query: 156 --EAIKAKKN--GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFY 211
A+K ++ + +V+GGG +GLEL + +V+++ P +P + AA
Sbjct: 158 STRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALL 216
Query: 212 EGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRP---LI 265
+GI++ T AVG+ DG ++ +G + D V+V VG +P +
Sbjct: 217 RRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGL 276
Query: 266 SLFKGQVA-ENKGGIETDDFFKTSADDVYAVGDVATFPM 303
L K V + +G I + +TS VYA+GD A P+
Sbjct: 277 GLEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPL 315
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 5e-16
Identities = 55/197 (27%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
VIATGS V + V D K I + A L + +VVGGG IGL
Sbjct: 163 VIATGSDVAGIPGVEVA-FDEKTI-----VSSTGALALEKVPA-----SMIVVGGGVIGL 211
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
EL + V++V + ++A + +GI G G + D
Sbjct: 212 ELGSVWARLGAKVTVVEFLDTILG-GMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGD 270
Query: 237 G---EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 286
G + VK + TL+A++V++ G +P G +G +E D F+
Sbjct: 271 GAKVTFEPVKGGEATTLDAEVVLIATGRKPST---DGLGLAKAGVVLDSRGRVEIDRHFQ 327
Query: 287 TSADDVYAVGDVATFPM 303
TS VYA+GDV PM
Sbjct: 328 TSIAGVYAIGDVVRGPM 344
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
GK +VVG Y+ LE + L +DV+++ R F D+A + GIK I
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL--RGFDQDMANKIGEHMEEHGIKFI 268
Query: 224 KGTVAVGFTTNADGE--VKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG------ 270
+ V + G V + + E + V++ +G +
Sbjct: 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT---RKIGLETV 325
Query: 271 --QVAENKGGIETDDFFKTSADDVYAVGDVAT 300
++ E G I D +T+ +YA+GD+
Sbjct: 326 GVKINEKTGKIPVTDEEQTNVPYIYAIGDILE 357
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 7e-16
Identities = 59/197 (29%), Positives = 84/197 (42%), Gaps = 29/197 (14%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IATGS V L + D K I + A L E K K VV+G GYIGL
Sbjct: 144 IIATGSDVKSLPGVTI---DEKKI-----VSSTGALALSEIPK-----KLVVIGAGYIGL 190
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
E+ + +V++V +P A+I ++ +G+K T VG T+ D
Sbjct: 191 EMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGD 249
Query: 237 GEVKEVKLKDG---RTLEADIVVVGVGGRPLISLFKGQVAEN-------KGGIETDDFFK 286
G V+ G +EAD+V+V G P G + G I ++ F
Sbjct: 250 GVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT---SGLNLDKIGVETDKLGRILVNERFS 306
Query: 287 TSADDVYAVGDVATFPM 303
T+ VYA+GDV PM
Sbjct: 307 TNVSGVYAIGDVIPGPM 323
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 1e-15
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 21/192 (10%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
++A+GS + + V D I +D A K V+G G IGL
Sbjct: 147 ILASGSKPVEIPPAPV---DQDVI-----VDSTGALDFQNVPG-----KLGVIGAGVIGL 193
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
EL + +V+++ +P +A + +G+KI+ G G
Sbjct: 194 ELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNK 252
Query: 237 G-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSADD 291
VK V + ++ D ++V VG RP + V + +G I DD+ TS
Sbjct: 253 QVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPG 312
Query: 292 VYAVGDVATFPM 303
VYA+GDV M
Sbjct: 313 VYAIGDVVRGAM 324
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 39/200 (19%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNI-----FYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
++ATG + GA I F L GK +V+G Y
Sbjct: 254 ILATGERPKYP---EIPGAVEYGITSDDLFSLPYFP--------------GKTLVIGASY 296
Query: 174 IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTV------ 227
+ LE + L DV+++ R F +A Y N G+K K V
Sbjct: 297 VALECAGFLASLGGDVTVMVRSILL--RGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQ 354
Query: 228 --AVGFTTNADGEVKE-VKLKDGRTLE--ADIVVVGVGGRPLIS---LFKGQVAENKGG- 278
V N G + DG+ E + V+ VG P +S V +K G
Sbjct: 355 LKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGR 414
Query: 279 IETDDFFKTSADDVYAVGDV 298
+ D +T+ +VYA+GD+
Sbjct: 415 VVCTDDEQTTVSNVYAIGDI 434
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 61/350 (17%), Positives = 99/350 (28%), Gaps = 81/350 (23%)
Query: 1 MAEKSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPAL--------- 50
M + I+G G +AG A R K K + +I E A
Sbjct: 4 MKVINVDVAIIGTG-TAGMGAYRAAKKHTDK---VVLI--------EGGAYGTTCARVGC 51
Query: 51 --SKAYL----FPEGTARLPGFHVCVGSG---GERLLPEWYKEK---------GIELILS 92
SK + ++ F + V G+ ++ E+ +E
Sbjct: 52 MPSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDE 111
Query: 93 TEIVR--ADIASKTLLS---ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLRE 147
+ +R A + L + +I K +VIATGS
Sbjct: 112 QDKIRGFAKFLDEHTLQVDDHSQVIAKR--IVIATGSRPNYPEFLAA------------- 156
Query: 148 IDDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
+L+ + V G G IGLEL AL + V + L
Sbjct: 157 --AGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQ 213
Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGG 261
++ + E + N+ + D K G T V+ G
Sbjct: 214 DEEMKRYAEKTF-NEEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGR 272
Query: 262 RPLISLFKGQVAEN-------KGGIETDDF-FKTSADDVYAVGDVATFPM 303
+ + EN K D+ +TS D ++ GD
Sbjct: 273 KANV---DKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLT 319
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 26/194 (13%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV---EAIKAKKN-GKAVVVGGGYI 174
+IATGS + L +F + + +++ A+ + VV+GGGYI
Sbjct: 138 IIATGSRPIELPNF--------------KFSN--RILDSTGALNLGEVPKSLVVIGGGYI 181
Query: 175 GLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234
G+EL A V+++ + F +AA + KG++++ +A G
Sbjct: 182 GIELGTAYANFGTKVTILEGAGEILS-GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEER 240
Query: 235 ADG-EVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 289
DG V + +T++AD V+V VG RP + L + + N+G IE D +TS
Sbjct: 241 EDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSV 300
Query: 290 DDVYAVGDVATFPM 303
+++A+GD+ P
Sbjct: 301 PNIFAIGDIVPGPA 314
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 50/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IA GS V +L + R ID A L E K +++GGG IGL
Sbjct: 153 IIAAGSRVTKLPFIPEDP---------RIIDSSGALALKEVPG-----KLLIIGGGIIGL 198
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236
E+ + +V M D+ ++ + I+ T V D
Sbjct: 199 EMGTVYSTLGSRLDVVEMMDGLMQ-GADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED 257
Query: 237 GEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSAD 290
G + + D V+V G P LIS K VA ++G IE D +T+
Sbjct: 258 GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVP 317
Query: 291 DVYAVGDVATFPM 303
+YA+GD+ PM
Sbjct: 318 HIYAIGDIVGQPM 330
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 64/195 (32%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 119 VIATGSTVLRLTDFGVEGADAKNIFYLREID--DADKLVEAIKAKKNGKAVVVGGGYIGL 176
+IATGS L D K + + A L K VV+GGG IGL
Sbjct: 141 IIATGSEPTELPFLPF---DEKVV-----LSSTGALALPRVPK-----TMVVIGGGVIGL 187
Query: 177 ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNA 235
EL + +V++V P C P D+ G A +K + T VG T N
Sbjct: 188 ELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNG 246
Query: 236 DGEVKEVKLKDGR--TLEADIVVVGVGGRP---LISLFKGQVA-ENKGGIETDDFFKTSA 289
D EV+ K+G+ T+ + ++V VG RP + L K VA +G ++ D F+TS
Sbjct: 247 DSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSI 306
Query: 290 DDVYAVGDVATF-PM 303
DVYA+GDV PM
Sbjct: 307 PDVYAIGDVVDKGPM 321
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 216 ANKGIKIIKGTVA--VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QV 272
+NK I +I ++ G G +K+V+ G +E + +
Sbjct: 191 SNKNIPVITESIRTLQG----EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGC 246
Query: 273 AENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
G DDF +TS ++Y G+ T
Sbjct: 247 ELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS 279
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 42/237 (17%), Positives = 70/237 (29%), Gaps = 45/237 (18%)
Query: 78 LPEWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-----VL 127
+ E+ + +E+ + + DI F ++ ++ ATG+T V
Sbjct: 445 VKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDGVA 494
Query: 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV---GGGYIGLELSAALKI 184
R + A+ + ++ GK VVV Y+G ++ L
Sbjct: 495 RFHTTALPIAEGMQVLGPDDLFAGRLPD--------GKKVVVYDDDHYYLGGVVAELLAQ 546
Query: 185 NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244
+VS+V P + G+ + V G V
Sbjct: 547 KGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVG---AGGVTVRDT 603
Query: 245 KDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVA 299
R LE D VV+ P L+ VA G V +GD
Sbjct: 604 YASIERELECDAVVMVTARLPREELYLDLVARRDAGEIA---------SVRGIGDAW 651
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 67/418 (16%), Positives = 124/418 (29%), Gaps = 73/418 (17%)
Query: 9 VILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFH 67
V++GGG + G AA+ E+ +I + Y
Sbjct: 6 VVVGGG-TGGATAAKYIKLAD-PSIEVTLIEP-----------NTDYYTC------YLS- 45
Query: 68 VCVGSGGERLLPEWYKE------KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
V GG+R L GI+++ D K + +A G F Y V+A
Sbjct: 46 NEVI-GGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYDRCVVA 103
Query: 122 TGSTVLRLTDFG-VEG----ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV------- 169
G + + +EG A AK + + L + ++ +G VV+
Sbjct: 104 PGIEL----IYDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPAAPF 159
Query: 170 ---GGGYIGLELSAA-LKINNI--DVSMVYPEP-WCMPRLFTADIAAFYEGYYANKGIKI 222
G Y A LK + V ++ + F+ Y N I+
Sbjct: 160 RCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEW 219
Query: 223 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETD 282
G + DG V+ G +AD++ + R + + G D
Sbjct: 220 HPGPDSA--VVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPVD 277
Query: 283 --DFFKTSADDVYAVGDVATF-PMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV- 338
F + ++ +GD + PM A + A ++ G+
Sbjct: 278 IKTFESSIHKGIHVIGDASIANPMPKSGYS--------ANSQGKVAAAAVVVLLKGEEPG 329
Query: 339 ----TGYDYLPYFYSRAFDLSWQF-YGDNVGDTVLFGDNDLASATHKFGTYWIKDGKV 391
Y + ++ + + D+ + W+ + +V
Sbjct: 330 TPSYLNTCYSILAPAYGISVAAIYRPNADGSAIESVPDSGGVTPVDA--PDWVLEREV 385
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 160 AKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEP---------WCMPRLFTADIA 208
A + K VVVGGG G + +K+ +I+V+++ P + +
Sbjct: 1 AGR--KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESI 58
Query: 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
GI+++ + T D + K VK G D VV G
Sbjct: 59 KHGYDGLRAHGIQVVHDSA-----TGIDPDKKLVKTAGGAEFGYDRCVVAPG 105
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 31/215 (14%)
Query: 104 TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKA 160
+ ++ G + + ++IA G G G + ++Y + +
Sbjct: 99 KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA--VKSKAEF------ 150
Query: 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--LFTA--DIAAFYEGYYA 216
+ + ++VGGG ++ + L +++++ R F A +
Sbjct: 151 -QGKRVLIVGGGDSAVDWALNLLDTARRITLIH-------RRPQFRAHEASVKELMKAHE 202
Query: 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG- 270
++++ D V+ + +T LE D V++ G +
Sbjct: 203 EGRLEVLTPYELRRV--EGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANW 260
Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
+A K I+ D TS VYA GD+ T+P KL
Sbjct: 261 GLALEKNKIKVDTTMATSIPGVYACGDIVTYPGKL 295
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 26/224 (11%)
Query: 93 TEIVRADIASKTLLSATGLIFKYQILVIATGSTVL---RLTDFG-VEGADAKNIFYLREI 148
T+ + D + + TG +++ + ++IA G +L G ++ +++Y +
Sbjct: 98 TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155
Query: 149 DDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTA--D 206
+ K + V+VGGG L+ + L N V++V+ F
Sbjct: 156 KSVEDF-------KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-----EFQGHGK 203
Query: 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIVVVGVGGR 262
A E AN I + T + +G + V L+ T+EAD +++ +G +
Sbjct: 204 TAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFK 262
Query: 263 PLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKL 305
+ + + + D KTS D +YA GD+A +P KL
Sbjct: 263 SNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGKL 306
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 20/146 (13%)
Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221
GK V+ + + AL + + + + AD A A +G++
Sbjct: 140 DQGKIGVIAASPMAIH--HALMLPDWGETTFFTN---GIVEPDADQHALL----AARGVR 190
Query: 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAENKGG 278
+ + +AD V L DGR++ + R + + V E G
Sbjct: 191 VETTRIR-EIAGHAD-----VVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMG 244
Query: 279 --IETDDFFKTSADDVYAVGDVATFP 302
I TD +T+A ++A GDVA
Sbjct: 245 STIVTDPMKQTTARGIFACGDVARPA 270
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 162 KNGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219
K + V+GGG G+E AA+ + I V+++ P AD + + K
Sbjct: 354 KGKRVAVIGGGNSGVE--AAIDLAGIVEHVTLLEFAP-----EMKAD-QVLQDKVRSLKN 405
Query: 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQVAE 274
+ II + +V ++ +D + + + V +G P +G +
Sbjct: 406 VDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALER 464
Query: 275 NKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
N+ G I D +TS V+A GD T P K
Sbjct: 465 NRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 35/202 (17%), Positives = 79/202 (39%), Gaps = 37/202 (18%)
Query: 118 LVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYI 174
++I G+ + +E A+ KN+ Y +DD K + ++GGG
Sbjct: 115 VIITAGNGAFKPRKLELENAEQYEGKNLHYF--VDDLQKF-------AGRRVAILGGGDS 165
Query: 175 GLELSAALKINNIDVSMVYPEPWCMPR--LFTA---DIAAFYEGYYANKGIKIIKGTVAV 229
++ + L+ +VS+++ R F A + + + ++ V
Sbjct: 166 AVDWALMLEPIAKEVSIIH-------RRDKFRAHEHSVENLHAS-----KVNVLTPFVPA 213
Query: 230 GFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG-QVAENKGGIETDD 283
+ +++++ L++ + LE D ++V G + K + K I
Sbjct: 214 EL--IGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKS 271
Query: 284 FFKTSADDVYAVGDVATFPMKL 305
+T+ + +A GD+ T+ K+
Sbjct: 272 TMETNIEGFFAAGDICTYEGKV 293
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 69/322 (21%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
E K+ G+++I + +I TL Y+ I G + D
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEE-----GYKAAFIGIGLPEPKTDDIFQGLTQD 300
Query: 140 KNIF----YLREIDDADKLVEAIKA----KKNGKAVVVGGGYIGLELSA------ALKIN 185
+ + +L + + K G +V+G G A AL+
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDT-----AFDCATSALRCG 355
Query: 186 NIDVSMVY----PEPWCMPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK 240
V +V+ + A E A + + + G +
Sbjct: 356 ARRVFLVFRKGFVN---IR-------AVPEEVELAKEEKCEFLPFLSPRKVIVK-GGRIV 404
Query: 241 EVKLK------DGR---------TLEADIVVVGVGGR---PLISLFKGQVAENK-GGIET 281
V+ G+ L+AD+V+ G P + + N+ E
Sbjct: 405 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEV 464
Query: 282 DDF-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340
D +TS V+A GD+ VE V+ ++++ K I A + G +V+
Sbjct: 465 DPETMQTSEPWVFAGGDIVGMANTT------VESVNDGKQASWYIHKYIQA-QYGASVSA 517
Query: 341 YDYLPYFYSRAF--DLSWQFYG 360
LP FY+ D+S + G
Sbjct: 518 KPELPLFYTPVDLVDISVEMAG 539
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 59/265 (22%), Positives = 94/265 (35%), Gaps = 72/265 (27%)
Query: 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA 139
+ + G+ + E+ R D + L K+ +++ATG R D G+
Sbjct: 180 KLLADAGVIYHPNFEVGR-DASLPELRR------KHVAVLVATGVYKAR--DIKAPGSGL 230
Query: 140 KNIF----YL-----REIDDADKLVEA--IKAKKNGKAVVV-GGGYIG-------LELSA 180
NI YL + D + E + A GK VVV GGG + A
Sbjct: 231 GNIVAALDYLTTSNKVSLGDTVEAYENGSLNAA--GKHVVVLGGGDTAMDCVRTAIRQGA 288
Query: 181 ALKINNIDVSMVYPEPWC-MPRLFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGE 238
V +Y MP + E +A + G++ I GFT D
Sbjct: 289 T------SVKCLYRRDRKNMP-------GSQREVAHAEEEGVEFIWQAAPEGFT--GDTV 333
Query: 239 VKEVKL---------KDGR-----------TLEADIVVVGVG--GRPLISLFKG-QVAEN 275
V V+ GR T++AD+V+ +G L + F ++
Sbjct: 334 VTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVT 393
Query: 276 K-GGIETD-DFFKTSADDVYAVGDV 298
+ G + D T+ D V+A GD+
Sbjct: 394 RWGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 3e-07
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFK 269
+ K + II + V ++ +D + +E + V +G P + +
Sbjct: 190 RSLKNVDIILNAQTTEVKGDGSK-VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE 248
Query: 270 GQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
G V N+ G I D +T+ V+A GD T P K
Sbjct: 249 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 36/240 (15%), Positives = 70/240 (29%), Gaps = 47/240 (19%)
Query: 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142
K K +L L + + AD + + ++IATG+ G I
Sbjct: 457 KNKESQLALGQKPMTADDVLQ---------YGADKVIIATGARWNTD---GTNCLTHDPI 504
Query: 143 FYLREIDDADKLV----EAIKAKKN-GKAVVV---GGGYIGLELSAALKINNIDVSMVYP 194
D + + + KK GK VV+ ++ L+ L +V++V
Sbjct: 505 ---PGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSG 561
Query: 195 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---------------DGEV 239
FT + ++ + G
Sbjct: 562 VHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPG 620
Query: 240 KEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
+ + R +E D +V+ G +L+ A ++ + +Y +GD
Sbjct: 621 VSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKARES------EWAENDIKGIYLIGD 674
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
AN +K I T V VKL++ +T L D V + +G P + K
Sbjct: 199 ANPKMKFIWDTAVEEI--QGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD 256
Query: 271 QVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYR 307
V+ G ++ D T+ ++A GDV+ +YR
Sbjct: 257 TVSLRDDGYVDVRDEIYTNIPMLFAAGDVSD---YIYR 291
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 40/155 (25%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVY-----PEPWCMPRLFTADIAAFYEGYYA 216
K + V +GGG G AA+ ++ V V P+ + + Y
Sbjct: 154 KGKRVVTIGGGNSGAI--AAISMSEY-VKNVTIIEYMPK-------YMCE--NAYVQEIK 201
Query: 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKGQ 271
+ I I + V VK KD T +E D V + VG P S K
Sbjct: 202 KRNIPYIMNAQVTEIVGDGKK-VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDS 260
Query: 272 -VAENKGG-IETDDFFKTSADDVYAVGDVATFPMK 304
V ++ G I D +TS VYA GDV +
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNFA 295
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
++ + +V D VK+V +++ +T L + V + +G P K
Sbjct: 201 KKPNVEFVLNSVVKEI--KGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKS 258
Query: 271 QVAE--NKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
E G I+ D++ +TS V+A GD + +R
Sbjct: 259 NGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS-AWLGFR 296
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 46/341 (13%), Positives = 88/341 (25%), Gaps = 107/341 (31%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
A + ++G G + A A +G + LF + +
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQV----------------------TLF-DAHS 406
Query: 62 RLPG-FHV-CVGSGGERL--LPEWY----KEKGIELILSTEIVRADIASKTLLSATGLIF 113
+ G F++ G E +Y + G+ L L+ + +
Sbjct: 407 EIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQ------------ 454
Query: 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGY 173
+ ++A+G ++G D + + V KA K ++G G
Sbjct: 455 AFDETILASGIVPRTP---PIDGIDHPKVLSYLD-------VLRDKAPVGNKVAIIGCGG 504
Query: 174 IGLELSAALKINNIDVSMVYPEPWC---------------------------------MP 200
IG + + L S
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564
Query: 201 RLFTADIAAFYEGYY----ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVV 256
+ + ++G+K+I G D + V + + L D VV
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID---DDGLHVVINGETQVLAVDNVV 621
Query: 257 VGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGD 297
+ G P +L S V+ +G
Sbjct: 622 ICAGQEPNRALA--------------QPLIDSGKTVHLIGG 648
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
N I+ + V +A G V + +K+ T L + VG ++ K
Sbjct: 190 NNDKIEFLTPYVVEEIKGDASG-VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQ 248
Query: 271 QVAEN------KGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307
+ G I D KT+ ++A GD+ +
Sbjct: 249 EDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRI---FAPK 288
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 242 VKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE-----NKGG-IETDDFFKTSADDVY 293
VKLKDG R L + VG + K ++ +GG + D +TS ++
Sbjct: 221 VKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLF 280
Query: 294 AVGDVATFPMKLYR 307
A GD+ +
Sbjct: 281 AAGDLRK---DAPK 291
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 8e-04
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-----LEADIVVVGVGGRPLISLFKG 270
N I+ + V + D V ++++D T L V V +G P L +
Sbjct: 202 NNDKIRFLTNHTVVAV--DGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE 259
Query: 271 QVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMKLYR 307
+ + G + TS V+A GD+ + YR
Sbjct: 260 AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVD---RTYR 295
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.98 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.98 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.97 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.97 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.96 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.94 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.94 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.93 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.91 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.83 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.75 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.64 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.6 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.58 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.37 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.34 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.31 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.25 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 99.25 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 99.25 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.19 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.15 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 99.11 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 99.09 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 99.08 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 99.06 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 99.03 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.03 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.0 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.93 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.92 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.92 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.92 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.92 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.9 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.9 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.9 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.9 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 98.89 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.86 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.86 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.85 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.85 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.85 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.84 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.83 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.8 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.8 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.8 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.79 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.79 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.79 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.77 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.75 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.74 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.74 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.73 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.72 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.72 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.71 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 98.71 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.7 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.69 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.68 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.66 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.65 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.64 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.64 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.64 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.63 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.63 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.63 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 98.62 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.62 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.61 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.6 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.6 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.59 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.59 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.58 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.57 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.57 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.57 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.57 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.56 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.56 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.56 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.56 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.53 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.52 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.52 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 98.52 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.51 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.51 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.5 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.5 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.49 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.49 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.48 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.48 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.48 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.47 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.47 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.46 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.45 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.45 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.44 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.44 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.44 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.42 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.42 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.42 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.41 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.41 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.4 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.4 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.4 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.39 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.39 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.39 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.39 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.39 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.38 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.38 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.37 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.36 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.36 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.36 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.36 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.35 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.35 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.34 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.34 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.34 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 98.32 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.31 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.3 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.3 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.3 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.3 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.29 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.29 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 98.29 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.29 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.28 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.27 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.27 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.27 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.26 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.24 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.24 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 98.24 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.24 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.24 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.23 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.23 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.23 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.22 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.21 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.2 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.2 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.19 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.18 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.18 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.18 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.17 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.17 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.17 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.17 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.16 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.16 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.16 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.14 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.14 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.13 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.13 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.12 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 98.12 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.12 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 98.11 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 98.1 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.08 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 98.08 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 98.08 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.07 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.06 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 98.06 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.05 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 98.05 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 98.05 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 98.04 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.04 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.03 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 98.03 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 98.02 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.02 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 98.01 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.98 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.98 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.98 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.98 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.98 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.94 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.94 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.94 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.94 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.92 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.9 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.89 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.89 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.88 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.86 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.86 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.86 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.85 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.85 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.83 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.83 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.79 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.78 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.77 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.76 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.76 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.75 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.73 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.71 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.69 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.68 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.67 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.65 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.65 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.65 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.65 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.64 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.64 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.63 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.63 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.62 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.61 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.6 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.59 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.44 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.37 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.36 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.34 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.33 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.26 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.24 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.23 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.22 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.21 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 97.19 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 97.16 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.14 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.11 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.04 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 97.02 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 97.01 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.97 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.94 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 96.93 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 96.92 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.9 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 96.86 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.84 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.84 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.81 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.81 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.77 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.64 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.64 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 96.52 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.36 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.28 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.2 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.02 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 95.69 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.67 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.64 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 95.61 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.59 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.58 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.46 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 95.23 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 95.09 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.08 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.06 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 95.05 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.0 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.84 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 94.82 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.58 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 94.55 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.44 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 94.41 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 94.23 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 93.99 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 93.92 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.91 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.9 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.86 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 93.79 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 93.78 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 93.75 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.67 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.62 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 93.62 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.61 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 93.51 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.49 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.45 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 93.41 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 93.37 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 93.34 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 93.3 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 93.29 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 93.27 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 93.21 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.2 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 93.13 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 93.13 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 93.12 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 93.1 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.08 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 93.08 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.02 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 92.94 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 92.93 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 92.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 92.92 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.84 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 92.8 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 92.76 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 92.75 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 92.69 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 92.62 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.58 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.56 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 92.55 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 92.55 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 92.5 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 92.5 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 92.48 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.45 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 92.39 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 92.38 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 92.3 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 92.29 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 92.29 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 92.27 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.22 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 92.16 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 92.14 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.04 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 92.03 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 91.98 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 91.95 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.84 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 91.7 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 91.69 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 91.64 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 91.61 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.55 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.52 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 91.5 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 91.5 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 91.35 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 91.3 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 91.28 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 91.19 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 91.15 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 91.11 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 91.1 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 91.1 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 91.07 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 91.05 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.04 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.93 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 90.9 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 90.83 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 90.8 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 90.71 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 90.7 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 90.68 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 90.67 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 90.59 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 90.57 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 90.44 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 90.4 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 90.3 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 90.28 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 90.24 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 90.23 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.23 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 90.19 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 90.19 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 90.14 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 90.11 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 90.08 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.05 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 89.91 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 89.83 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 89.82 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 89.74 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 89.72 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 89.68 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 89.67 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 89.63 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 89.61 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 89.56 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 89.53 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 89.46 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 89.44 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 89.4 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 89.35 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 89.19 |
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-57 Score=435.37 Aligned_cols=401 Identities=30% Similarity=0.495 Sum_probs=346.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++||||||||+||+++|.+|+++|. ..+|+|||+++..+|.++.+++.++....... .......+++.
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~----------~~~~~~~~~~~ 76 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREKTFE----------RICIRPAQFWE 76 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSSCSG----------GGBSSCHHHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCCCHH----------HhccCCHHHHH
Confidence 46899999999999999999999986 45799999999999998877766554321110 01235567888
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.++.++.+++..+.+.+.++..+.||+||+|||+.|+.|+ ++|.+..+++++++..++..+.+.+.. .+
T Consensus 77 ~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~~-~~ 152 (415)
T 3lxd_A 77 DKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLS---CVGADLAGVHAVRTKEDADRLMAELDA-GA 152 (415)
T ss_dssp HTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCB---TTSSCCBTEECCCSHHHHHHHHHHHHT-TC
T ss_pred HCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCC---CCCccccCEEEEcCHHHHHHHHHHhhh-cC
Confidence 89999999999999999999999999999999999999999998887 577777889999999999988887752 27
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|+++.. +++++..+.
T Consensus 153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~v~ 231 (415)
T 3lxd_A 153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEG-DGTKVTGVR 231 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEE-SSSBEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEe-cCCcEEEEE
Confidence 8999999999999999999999999999999999998878999999999999999999999999999987 456777899
Q ss_pred eCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEeccccccccccc-CcceecccHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLY-REMRRVEHVDHARKS 321 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~-~~~~~~~~~~~A~~~ 321 (434)
+.+|+++++|.||+|+|.+|++++++. ++..++ +|.||+++||++|+|||+|||+..+...+ +.+.+.++|..|..|
T Consensus 232 l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~-gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~q 310 (415)
T 3lxd_A 232 MQDGSVIPADIVIVGIGIVPCVGALISAGASGGN-GVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDM 310 (415)
T ss_dssp ESSSCEEECSEEEECSCCEESCHHHHHTTCCCSS-SEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHH
T ss_pred eCCCCEEEcCEEEECCCCccChHHHHhCCCCcCC-CEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHH
Confidence 999999999999999999999988754 555564 59999999999999999999999887666 777788999999999
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC--CEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecC
Q 013914 322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~ 399 (434)
|+.||+||++.. ..|..+|++|+.++++.+..+|...+ +.+..++.. ...|.++++++|+|+|+.++|.
T Consensus 311 g~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~ 381 (415)
T 3lxd_A 311 ATAAAKDICGAP-----VPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPA----TRSFSVVYLKGGKVVALDCVNM 381 (415)
T ss_dssp HHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEEGG----GTEEEEEEEETTEEEEEEEESC
T ss_pred HHHHHHHhcCCC-----CCCCCCCeeEeeeCCcEEEEEeCCCCCCEEEEEecCC----CCeEEEEEEECCEEEEEEEECC
Confidence 999999999763 57888999999999999999998764 344455543 4679999999999999999984
Q ss_pred CHHHHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 400 TPEENKAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 400 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+...+..+|..+.++ +.++|.++.+++.+
T Consensus 382 -~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~~ 412 (415)
T 3lxd_A 382 -VKDYVQGKKLVEARAQI-APEQLADAGVPLKE 412 (415)
T ss_dssp -HHHHHHHHHHHHHTCCC-CHHHHTCTTSCGGG
T ss_pred -hHHHHHHHHHHHCCCCC-CHHHhcCCCCChHH
Confidence 67788899999999988 57899999988653
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=431.86 Aligned_cols=395 Identities=25% Similarity=0.395 Sum_probs=340.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||+||+++|.+|+++|. +.+|+|||+++..+|.++.+++.++........ . ....+++.+.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~----------~-~~~~~~~~~~ 70 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPP----------I-LAEADWYGEA 70 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCC----------B-SSCTTHHHHT
T ss_pred CCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCCHHH----------h-cCCHHHHHHC
Confidence 589999999999999999999986 467999999999999988887765433221110 1 2345678888
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
+++++.+++++.+++..+++.+.+++++.||+||+|||+.|+.|+ ++|.+.++++++++..++..+++.+. .+++
T Consensus 71 ~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---ipG~~~~~v~~~~~~~d~~~l~~~~~--~~~~ 145 (410)
T 3ef6_A 71 RIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMA---LPGSQLPGVVTLRTYGDVQVLRDSWT--SATR 145 (410)
T ss_dssp TCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTTTSTTEECCCSHHHHHHHHHHCC--TTCE
T ss_pred CCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCC---CCCccccceEEeccHHHHHHHHHHhc--cCCe
Confidence 999999999999999999999999999999999999999998887 67777788999999999988877654 4789
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|++++. ++.+..+++.
T Consensus 146 vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~ 223 (410)
T 3ef6_A 146 LLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVMAS 223 (410)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEEET
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEEEC
Confidence 99999999999999999999999999999999988768999999999999999999999999999987 4455688999
Q ss_pred CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 246 ~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
+|+++++|.||+|+|.+|++++++. ++..+ ++|.||+++||++|+|||+|||+..+... +...++++|..|..||+.
T Consensus 224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~ 301 (410)
T 3ef6_A 224 DGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAA 301 (410)
T ss_dssp TSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHH
T ss_pred CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHH
Confidence 9999999999999999999988754 56656 55999999999999999999999987764 666677899999999999
Q ss_pred HHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC--CEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHH
Q 013914 325 AVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPE 402 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~ 402 (434)
||+||++.. ..|..+|++|+.++++.+..+|...+ +.+..++.. ...|.++++++|+|+|++++|. ..
T Consensus 302 aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~-~~ 371 (410)
T 3ef6_A 302 VAAAILGKN-----VSAPQLPVSWTEIAGHRMQMAGDIEGPGDFVSRGMPG----SGAALLFRLQERRIQAVVAVDA-PR 371 (410)
T ss_dssp HHHHHTTCC-----CCCCBCCEEEEEETTEEEEEESCSSSSSEEEEESCTT----SSSEEEEEEETTEEEEEEEESC-HH
T ss_pred HHHHHcCCC-----CCCCCCCeeEEEECCceEEEEcCCCCCCEEEEEeeCC----CCeEEEEEEECCEEEEEEEECC-hH
Confidence 999999863 67888999999999999999998764 345555544 4678999999999999999985 67
Q ss_pred HHHHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 403 ENKAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 403 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+...+..+|+.+..+ +.++|.++.+++.+
T Consensus 372 ~~~~~~~~i~~~~~~-~~~~l~~~~~~l~~ 400 (410)
T 3ef6_A 372 DFALATRLVEARAAI-EPARLADLSNSMRD 400 (410)
T ss_dssp HHHHHHHHHHHTCBC-CHHHHHCTTSCGGG
T ss_pred HHHHHHHHHhCCCCC-CHHHhcCCCCCHHH
Confidence 788899999999988 56889999888754
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-56 Score=426.34 Aligned_cols=397 Identities=29% Similarity=0.458 Sum_probs=343.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
++||||||||+||+++|.+|++.|+ +.+|+|||+++..+|.++.+++.++....... .......+++.+
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~----------~~~~~~~~~~~~ 69 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGGDPN----------SLMFRPEKFFQD 69 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCCCTT----------SSBSSCHHHHHH
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCCCHH----------HccCCCHHHHHh
Confidence 3689999999999999999999987 34599999999989998888766554332111 112356778888
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
.+++++. ..++.++++.+.+.+.++.++.||+||+|||++|+.|+ ++|.+..+++++++..++..+.+.+. .++
T Consensus 70 ~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~---i~g~~~~~v~~~~~~~d~~~l~~~~~--~~~ 143 (404)
T 3fg2_P 70 QAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLD---VPNASLPDVLYLRTLDESEVLRQRMP--DKK 143 (404)
T ss_dssp TTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEECCCC---STTTTSTTEECCSSHHHHHHHHHHGG--GCS
T ss_pred CCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCccCCC---CCCCCCCcEEEECCHHHHHHHHHHhh--cCC
Confidence 9999999 79999999999999999999999999999999998887 57777788999999999988877765 478
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
+++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.|+++.. +++++..+.+
T Consensus 144 ~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v~~V~~ 222 (404)
T 3fg2_P 144 HVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA-EGDRVTGVVL 222 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe-cCCcEEEEEe
Confidence 999999999999999999999999999999999998878999999999999999999999999999987 3567778999
Q ss_pred CCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHH
Q 013914 245 KDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAE 323 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 323 (434)
.+|+++++|.||+|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+...++.+.+.++|..|..||+
T Consensus 223 ~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~G-i~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~ 301 (404)
T 3fg2_P 223 SDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAAG-IIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR 301 (404)
T ss_dssp TTSCEEECSEEEECCCEEECCHHHHHTTCCBSSS-EEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHH
T ss_pred CCCCEEEcCEEEECcCCccCHHHHHhCCCCCCCC-EEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHH
Confidence 99999999999999999999988754 5666655 999999999999999999999988776777777889999999999
Q ss_pred HHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC--CEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCH
Q 013914 324 QAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTP 401 (434)
Q Consensus 324 ~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~ 401 (434)
.||+||++.. .+|..+|++|+.++++.+..+|...+ +.+..++.. ...|.++++++|+|+|+.++| ..
T Consensus 302 ~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~-~~ 371 (404)
T 3fg2_P 302 CVAARLTGDA-----KPYDGYPWFWSDQGDDKLQIVGLTAGFDQVVIRGSVA----ERSFSAFCYKAGKLIGIESVN-RA 371 (404)
T ss_dssp HHHHHTTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCCEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CH
T ss_pred HHHHHhCCCC-----CCCCCCCceEeEECCcEEEEEeCCCCCCEEEEEecCC----CCcEEEEEEECCEEEEEEEeC-CH
Confidence 9999999763 57888999999999999999998753 344555543 567999999999999999998 46
Q ss_pred HHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 402 EENKAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 402 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
.+...+..+|+.+..+ +.++|.++.+++.
T Consensus 372 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~ 400 (404)
T 3fg2_P 372 ADHVFGRKILPLDKSV-TPEQAADLSFDLK 400 (404)
T ss_dssp HHHHHHHHHTTTTCCC-CHHHHHCTTSCHH
T ss_pred HHHHHHHHHHHcCCCC-CHHHhcCCCCChH
Confidence 7788899999999988 5789999988764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-56 Score=432.33 Aligned_cols=401 Identities=18% Similarity=0.222 Sum_probs=319.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+|||||||+||++||.+|++.|. +.+|+|||+++..+|.+|+++..+...... ... .......+++++.
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~-----~~~----~~~~~~~~~~~~~ 70 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPYVIGEVVED-----RRY----ALAYTPEKFYDRK 70 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHHHHTTSSCC-----GGG----TBCCCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHHHHcCCccc-----hhh----hhhcCHHHHHHhc
Confidence 479999999999999999999885 466999999998888877765422111100 000 0012334667788
Q ss_pred CcEEEcCCeeEEEECCCCEEEccC-----CcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 86 GIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
+++++.+++|+.++.+.+.+.+.+ +.++.||+||||||++|+.|+ +++ .+++..++..++..+.+.+..
T Consensus 71 ~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~---i~g---~~~~~~~~~~~~~~l~~~~~~ 144 (437)
T 4eqs_A 71 QITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG---FES---DITFTLRNLEDTDAIDQFIKA 144 (437)
T ss_dssp CCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC---CCC---TTEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc---ccC---ceEEeeccHHHHHHHHHhhhc
Confidence 999999999999999998876532 236899999999999988765 454 568888999999998888776
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.++++||+++++++|++++. .
T Consensus 145 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~------~ 217 (437)
T 4eqs_A 145 NQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRLNEEINAING------N 217 (437)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEESCCEEEEET------T
T ss_pred cCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEeccEEEEecC------C
Confidence 67899999999999999999999999999999999999986 7999999999999999999999999999865 2
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHH
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 318 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A 318 (434)
.+.+++|+++++|.|++|+|++||+++++. ++.. ++|+|.||+++||++|||||+|||+..++...+.+.+.+++..|
T Consensus 218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A 297 (437)
T 4eqs_A 218 EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGA 297 (437)
T ss_dssp EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHH
T ss_pred eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHHHH
Confidence 578899999999999999999999998854 6766 67899999999999999999999999988878887788899999
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC------E-E--EEcCCCcc--cCCCcEEEEEE-
Q 013914 319 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD------T-V--LFGDNDLA--SATHKFGTYWI- 386 (434)
Q Consensus 319 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~------~-~--~~~~~~~~--~~~~~~~~~~~- 386 (434)
.+||+.+|+||++.... ...++.+..+..+++..+..+|+++.+ . + ........ .++++|+|+++
T Consensus 298 ~~~g~~~a~ni~g~~~~---~~~~~~~~~~~~~~~p~ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d 374 (437)
T 4eqs_A 298 HRAASIVAEQIAGNDTI---EFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYD 374 (437)
T ss_dssp HHHHHHHHHHHHSCTTC---CCCCBCCCEEEEETTEEEEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCc---ccccceeEEeeeeccceEEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEEEEEEEE
Confidence 99999999999986421 222344444455566677777877532 1 1 11111111 34567888877
Q ss_pred -eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhcc-CCCccc
Q 013914 387 -KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNE-GLSFAS 432 (434)
Q Consensus 387 -~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~ 432 (434)
++++|||+|++|++ ++| ++.++.||++++|++||..+.-+ .++|.+
T Consensus 375 ~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~ 424 (437)
T 4eqs_A 375 TSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSH 424 (437)
T ss_dssp TTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCC
T ss_pred CCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCc
Confidence 57999999999986 777 49999999999999977765433 455554
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-54 Score=419.47 Aligned_cols=400 Identities=26% Similarity=0.422 Sum_probs=330.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.+||||||||+||+++|..|++.|. +.+|+|||+++..+|.++.+++.++...... .. ......++++
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--~~--------~~~~~~~~~~ 71 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATA--ES--------LYLRTPDAYA 71 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSCS--GG--------GBSSCHHHHH
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCCCh--HH--------hcccCHHHHH
Confidence 36899999999999999999999986 3459999999888888877766554322110 00 0123457788
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCC---eEEecCHHHHHHHHHHHHh
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN---IFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~---v~~~~~~~~~~~~~~~l~~ 160 (434)
+.+++++.++.|+.++++.++|.+.+++++.||+||+|||++|+.|+ ++|.+..+ ++++++.+++..+.+.+.
T Consensus 72 ~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~---i~G~~~~~~~~v~~~~~~~d~~~l~~~l~- 147 (431)
T 1q1r_A 72 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLP---VASGAVGKANNFRYLRTLEDAECIRRQLI- 147 (431)
T ss_dssp HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTHHHHSTTEEESSSHHHHHHHHHTCC-
T ss_pred hCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCC---CCCcccCCCceEEEECCHHHHHHHHHHhh-
Confidence 89999999999999999889999988889999999999999998887 46654344 888899999888776553
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcE
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEV 239 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v 239 (434)
.+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|+++... +++.+
T Consensus 148 -~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v 226 (431)
T 1q1r_A 148 -ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKV 226 (431)
T ss_dssp -TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCE
T ss_pred -cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcE
Confidence 4789999999999999999999999999999999999887789999999999999999999999999999862 34666
Q ss_pred EEEEeCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHH
Q 013914 240 KEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHA 318 (434)
Q Consensus 240 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A 318 (434)
..+.+.+|+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+.+.++...+.+++..|
T Consensus 227 ~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 305 (431)
T 1q1r_A 227 TAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVDN-GIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNA 305 (431)
T ss_dssp EEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBSS-SEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHH
T ss_pred EEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCCC-CEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHH
Confidence 6888999999999999999999999988754 565554 59999999999999999999999877666776777899999
Q ss_pred HHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC--EEEEcCCCcccCCCcEEEEEEeCCEEEEEEE
Q 013914 319 RKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD--TVLFGDNDLASATHKFGTYWIKDGKVVGVFL 396 (434)
Q Consensus 319 ~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~ 396 (434)
..||+.||.||++.. ..|..+|++|+..+++.+..+|.+.+. .+..++.. ...|.+++.++|+|+|+++
T Consensus 306 ~~qg~~aa~~i~g~~-----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~G~~~ 376 (431)
T 1q1r_A 306 LEQARKIAAILCGKV-----PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDT 376 (431)
T ss_dssp HHHHHHHHHHHTTCC-----CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhcCCC-----CCCCCCCeEEEEECCceEEEEeCCCCCCEEEEEccCC----CCeEEEEEEeCCEEEEEEE
Confidence 999999999999753 467789999999999999999976532 33333322 4567888889999999999
Q ss_pred ecCCHHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 397 ESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 397 ~g~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+|+. .+...+..+|..+.++ +.++|.++.+++.
T Consensus 377 ~g~~-~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~ 409 (431)
T 1q1r_A 377 VNRP-VEFNQSKQIITDRLPV-EPNLLGDESVPLK 409 (431)
T ss_dssp ESCH-HHHHHHHHHHHTTCCC-CHHHHTCTTSCHH
T ss_pred ECCh-HHHHHHHHHHHCCCCC-CHHHhhCCCCCHH
Confidence 9964 5566677788888877 5668888888764
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-54 Score=415.22 Aligned_cols=392 Identities=27% Similarity=0.428 Sum_probs=323.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++||+|||||+||+++|..|++.|. +.+|+|||+++..+|.++.+++.++....... .... +++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~ 70 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK-------------IRLD-CKR 70 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCCGGG-------------SBCC-CTT
T ss_pred CCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCchhh-------------hhHH-HHH
Confidence 36899999999999999999999986 34599999998888887776654443211000 0111 456
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC-CCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
+.+++++.++.++.++++.++|.+.+++++.||+||+|||++|+.|+ + +|.+ ++++++++.+++..+.+.+. .
T Consensus 71 ~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~---i~~G~~-~~v~~~~~~~~~~~l~~~~~--~ 144 (408)
T 2gqw_A 71 APEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALP---TLQGAT-MPVHTLRTLEDARRIQAGLR--P 144 (408)
T ss_dssp SCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCG---GGTTCS-SCEEECCSHHHHHHHHTTCC--T
T ss_pred HCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC---ccCCCC-CcEEEECCHHHHHHHHHHhh--c
Confidence 77999999988999999989999988889999999999999998887 5 6665 78999999999888765443 4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++ ++ .+
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~---~~---~v 218 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV---DG---VV 218 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE---TT---EE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE---CC---EE
Confidence 7899999999999999999999999999999999999876899999999999999999999999999997 23 57
Q ss_pred EeCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHH
Q 013914 243 KLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 321 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 321 (434)
++.+|+++++|.||+|+|++|++++++. ++..++| |.||+++||++|+|||+|||+..+.+.++...+++++..|..|
T Consensus 219 ~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~g-i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~ 297 (408)
T 2gqw_A 219 LLDDGTRIAADMVVVGIGVLANDALARAAGLACDDG-IFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQ 297 (408)
T ss_dssp EETTSCEEECSEEEECSCEEECCHHHHHHTCCBSSS-EECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHH
T ss_pred EECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCCC-EEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHH
Confidence 7889999999999999999999987754 5666544 9999999999999999999999876656666666799999999
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-CCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCC
Q 013914 322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-GDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGT 400 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~ 400 (434)
|+.||.||.+... ..|..+|++|+.+++..+..+|... .+.+..++.. .....|.+++.++++|+|++++|+.
T Consensus 298 g~~aa~~i~g~~~----~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~~~~g~~ 371 (408)
T 2gqw_A 298 GIAVARHLVDPTA----PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVS--LDAPKFTLIELQKGRIVGATCVNNA 371 (408)
T ss_dssp HHHHHHHHHCTTS----CCCCCCCEEEEEETTEEEEEEECSCCSEEEEESCCC--SSSCCEEEEEEETTEEEEEEEESCH
T ss_pred HHHHHHHhcCCCC----CcCCCCCeEEEEECCceEEEECCCCCCEEEEEccCC--CCCCeEEEEEEeCCEEEEEEEECCh
Confidence 9999999997531 2678899999999999999999721 2233333321 1135688888899999999999964
Q ss_pred HHHHHHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 401 PEENKAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 401 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
.++..+..+|+++.++ +..+|.++.+++.
T Consensus 372 -~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~ 400 (408)
T 2gqw_A 372 -RDFAPLRRLLAVGAKP-DRAALADPATDLR 400 (408)
T ss_dssp -HHHHHHHHHHHTTCCC-CHHHHHCTTCCHH
T ss_pred -HHHHHHHHHHHCCCCC-ChHHhcCCCCCHH
Confidence 5678999999999988 4567888887754
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=411.77 Aligned_cols=363 Identities=26% Similarity=0.373 Sum_probs=307.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++.+|||||||+||++||..|.+.+. +|+|||+++..+|.++.+++.+........+ .....++++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~---~itlie~~~~~~y~~~~l~~~l~g~~~~~~l-----------~~~~~~~~~ 73 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCD---DITMINSEKYLPYYRPRLNEIIAKNKSIDDI-----------LIKKNDWYE 73 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCS---CEEEECSSSSCCBCGGGHHHHHHSCCCGGGT-----------BSSCHHHHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCC---EEEEEECCCCCCcccChhhHHHcCCCCHHHc-----------cCCCHHHHH
Confidence 46899999999999999999955444 4999999999899888887644322111111 245678888
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.+++++.+++|+.++++.++|.+.+++++.||+||+|||++|+.|+ ++|.+ +++++++.+++..+++.+. .+
T Consensus 74 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~---i~G~~--~v~~~~~~~d~~~l~~~l~--~~ 146 (385)
T 3klj_A 74 KNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK---VPHAD--EIFSLYSYDDALKIKDECK--NK 146 (385)
T ss_dssp HTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCC---CTTCS--CEECCSSHHHHHHHHHHHH--HH
T ss_pred HCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCC---CCCCC--CeEEeCCHHHHHHHHHHhh--cC
Confidence 99999999999999999999999999999999999999999999887 57765 8999999999999988776 36
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||++++++.++++
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i------------ 214 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM------------ 214 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC------------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc------------
Confidence 89999999999999999999999999999999999998789999999999999999999999887666
Q ss_pred eCCCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHH
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSA 322 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g 322 (434)
|+++++|.||+|+|++|++++++. ++..++ +|.||+++||+.|+|||+|||+..+.. ...++..|..||
T Consensus 215 ---g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~~-gi~vd~~~~t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg 284 (385)
T 3klj_A 215 ---GDLIRSSCVITAVGVKPNLDFIKDTEIASKR-GILVNDHMETSIKDIYACGDVAEFYGK------NPGLINIANKQG 284 (385)
T ss_dssp ---HHHHHHSEEEECCCEEECCGGGTTSCCCBSS-SEEECTTCBCSSTTEEECGGGEEETTB------CCCCHHHHHHHH
T ss_pred ---CeEEecCeEEECcCcccChhhhhhcCCCcCC-CEEECCCcccCCCCEEEEEeeEecCCC------cccHHHHHHHHH
Confidence 557899999999999999988854 555554 499999999999999999999986543 126899999999
Q ss_pred HHHHHHHhccCCCCcccCCCC-CCeeEEeccCceeEEeecCCCC---EEEEcCCCcccCCCcEEEEEEeCCEEEEEEEec
Q 013914 323 EQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWIKDGKVVGVFLES 398 (434)
Q Consensus 323 ~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g 398 (434)
+.||+||++.. ..|.. .|++|+++++..+..+|.++++ .+.. +. ....|.++++++|+|+|++++|
T Consensus 285 ~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~g~~~~g 354 (385)
T 3klj_A 285 EVAGLNACGED-----ASYSEIIPSPILKVSGISIISCGDIENNKPSKVFR-ST----QEDKYIVCMLKENKIDAAAVIG 354 (385)
T ss_dssp HHHHHHHTTCC-----CCCCCCCCCCEEEETTEEEEEESCCTTCCCSEEEE-EE----CSSCEEEEEEETTEEEEEEEES
T ss_pred HHHHHHhcCCC-----cCCCCCCCcEEEEeCCCcEEEEcCCCCCCCeEEEE-EC----CCCeEEEEEEECCEEEEEEEEC
Confidence 99999999864 45554 6999999999999999987643 2322 22 2567999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCCCCh
Q 013914 399 GTPEENKAIAKVARVQPSVESL 420 (434)
Q Consensus 399 ~~~~~~~~~~~~i~~~~~~~~~ 420 (434)
+. .....+..+|+++.+++++
T Consensus 355 ~~-~~~~~~~~~i~~~~~~~~~ 375 (385)
T 3klj_A 355 DV-SLGTKLKKAIDSSKSFDNI 375 (385)
T ss_dssp CH-HHHHHHHHHHHTTCBCSCC
T ss_pred Cc-HHHHHHHHHHHcCCCcccc
Confidence 65 4445799999999999876
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-54 Score=417.71 Aligned_cols=404 Identities=17% Similarity=0.223 Sum_probs=312.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
+||+|||||+||++||.+|++++. ..+|+|||+++..+|..+.+...+ ... ..... .......+++.+.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~~~-~~~-~~~~~--------~~~~~~~~~~~~~ 71 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSAYF-NHT-INELH--------EARYITEEELRRQ 71 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHT
T ss_pred CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchhhh-cCC-CCCHH--------HhhcCCHHHHHHC
Confidence 599999999999999999999821 234999999987776544332111 000 00000 0112356778889
Q ss_pred CcEEEcCCeeEEEECCCCEEEcc---CCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 86 GIELILSTEIVRADIASKTLLSA---TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~---~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
+++++.+++|+.++++.+.+.+. ++.++.||++|+|||++|..|+ ++|.+..++++++++.+...+.+... .
T Consensus 72 gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~--~ 146 (452)
T 3oc4_A 72 KIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQ---IRGSQTEKLLKYKFLSGALAAVPLLE--N 146 (452)
T ss_dssp TEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCC---CBTTTCTTEEEGGGCC----CCHHHH--T
T ss_pred CCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh--c
Confidence 99999999999999999887652 5567999999999999999887 57777788998887777666555444 5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
+++++|||+|++|+|+|..+.+.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++|++++. .++.+ .+
T Consensus 147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~v-~v 224 (452)
T 3oc4_A 147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEE-TANGI-VL 224 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEE-CSSCE-EE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEc-cCCeE-EE
Confidence 79999999999999999999999999999999999998768999999999999999999999999999986 34454 77
Q ss_pred EeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHH
Q 013914 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 321 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 321 (434)
.+++| ++++|.|++|+|++|++++++..+.. .+|+|.||+++||++|+|||+|||+..+....+...+.+++..|..|
T Consensus 225 ~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~ 303 (452)
T 3oc4_A 225 ETSEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRT 303 (452)
T ss_dssp EESSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHH
T ss_pred EECCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHH
Confidence 78777 89999999999999999988666555 67899999999999999999999999876655655556789999999
Q ss_pred HHHHHHHHhccCCCCcccCCC-CCCeeEEeccCceeEEeecCCCC------EEE---EcC--CCcccCCCcEEEEEE--e
Q 013914 322 AEQAVKTIMATEGGKTVTGYD-YLPYFYSRAFDLSWQFYGDNVGD------TVL---FGD--NDLASATHKFGTYWI--K 387 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~g~~~~~------~~~---~~~--~~~~~~~~~~~~~~~--~ 387 (434)
|+.||.||++.. ..+. ..+...+.+|+..+..+|+++.+ .+. +.. ......+.+|+|+++ +
T Consensus 304 g~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~~~~ 378 (452)
T 3oc4_A 304 GLVVANNLEEKT-----HRFIGSLRTMGTKVGDYYLASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIYDKV 378 (452)
T ss_dssp HHHHTTSSSSCC-----CCCCCCCCCEEEEETTEEEEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEEETT
T ss_pred HHHHHHHhcCCC-----ccCCCccccEEEEEcCeeEEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEEECC
Confidence 999999998753 2222 22344556677778888987632 111 111 111123567899888 4
Q ss_pred CCEEEEEEEecC-CHHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013914 388 DGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK 433 (434)
Q Consensus 388 ~~~ilG~~~~g~-~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~~ 433 (434)
+++|||+|++|+ ++.++ +.++.||++++|++|+..+ .-+.++|.+.
T Consensus 379 ~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~ 427 (452)
T 3oc4_A 379 TQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNI 427 (452)
T ss_dssp TCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCS
T ss_pred CCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCc
Confidence 599999999999 68775 9999999999999988877 4677777654
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=419.38 Aligned_cols=413 Identities=24% Similarity=0.274 Sum_probs=302.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC-CCCCCCcccccCCCCCCCChhhHh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
++||+|||||+||+++|..|++++ +..+|+|||+++..+|.++.+...+..... ...+..+.. ......+++.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~-~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~ 76 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLD-PEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPY-----NVVRDPEFFR 76 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHC-TTSEEEEECCC--------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhC-cCCCEEEEECCCcccccccccchhhcCCCCchHHhccccc-----hhccCHHHHh
Confidence 579999999999999999999982 123499999999877766543321110000 000000000 0112233333
Q ss_pred -hcCcEEEcCCeeEEEECCCCEEEccC---Cc--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHH
Q 013914 84 -EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 84 -~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 157 (434)
+.+++++.+++|+.++++.+.+.+.+ +. .+.||++|+|||++|+.|+ ++|.+.++++++.+..++..+.+.
T Consensus 77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~ 153 (472)
T 3iwa_A 77 INKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP---VEGMDLAGVTPVTNLDEAEFVQHA 153 (472)
T ss_dssp ----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCS---CTTTTSBTEEECCSHHHHHHHHHH
T ss_pred hhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCC---CCCCCCCCEEEeCCHHHHHHHHHH
Confidence 57899999999999999999887754 55 7899999999999998887 577766789999999998888776
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
+....+++++|||+|++|+|+|..+.+. |.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++. ++
T Consensus 154 l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~ 232 (472)
T 3iwa_A 154 ISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEG-EN 232 (472)
T ss_dssp CCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SS
T ss_pred hhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEc-cC
Confidence 6544579999999999999999999999 999999999999998558999999999999999999999999999987 34
Q ss_pred CcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceeccc
Q 013914 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 237 g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~ 314 (434)
+.+ .+.+.+|+++++|.||+|+|++|+++++.. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+.++++
T Consensus 233 ~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~ 311 (472)
T 3iwa_A 233 GKV-ARVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPL 311 (472)
T ss_dssp SBE-EEEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCC
T ss_pred CeE-EEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecch
Confidence 444 477888999999999999999999987743 6666 6789999999999999999999999887766666666678
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE---EEEcCCCcc----cCCCcE
Q 013914 315 VDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT---VLFGDNDLA----SATHKF 381 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~~~----~~~~~~ 381 (434)
+..|..||+.||+||++... .....+|++++.+++..+..+|+++ |.. ..+....+. ..+.+|
T Consensus 312 ~~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 387 (472)
T 3iwa_A 312 GSMANRQGRVIGTNLADGDA----TFPGAVGSWAVKLFEGSASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEKTIMT 387 (472)
T ss_dssp TTHHHHHHHHHHHHHTTCCC----CCCCBCCCEEEECSSCEEEEEECCHHHHHHTTCCEEEEEEEC-----------CEE
T ss_pred HHHHHHHHHHHHHHhcCCCc----cCCCCCcceEEEECCceeEEEECCHHHHHHcCCceEEEEEecCCccCccCCCceEE
Confidence 88999999999999997542 2334567888888898899999875 211 122111111 235678
Q ss_pred EEEEE--eCCEEEEEEEecC---CHHH-HHHHHHHHHcCCCCCChhhhhccC-CCccc
Q 013914 382 GTYWI--KDGKVVGVFLESG---TPEE-NKAIAKVARVQPSVESLDVLKNEG-LSFAS 432 (434)
Q Consensus 382 ~~~~~--~~~~ilG~~~~g~---~~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~ 432 (434)
+|+++ ++++|||+|++|+ .+.+ ++.++.||++++|++|+..+.-+. ++|.+
T Consensus 388 ~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 445 (472)
T 3iwa_A 388 LQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFAS 445 (472)
T ss_dssp EEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC-------
T ss_pred EEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCC
Confidence 89888 5799999999999 3356 599999999999999666554443 44443
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=414.43 Aligned_cols=405 Identities=20% Similarity=0.243 Sum_probs=311.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH-h
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (434)
++||+|||||+||+++|..|++.+. ..+|+|||+++...+..+.+...+........ ......+++ +
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~~~~ 70 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPYVVEGLSTPDK-----------LMYYPPEVFIK 70 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-----------------------------------CTHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCccccCCCCCHHH-----------hhhcCHHHHHH
Confidence 5899999999999999999999842 34499999998765543322211100000000 011223344 6
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
+.+++++.+++++.++.+.+.+.+.++ .++.||+||+|||++|+.|+ ++|.+.+++++.++..+...+.+.+....
T Consensus 71 ~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~~~~~~~~~~ 147 (449)
T 3kd9_A 71 KRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPA---IEGVNLKGVFTADLPPDALAIREYMEKYK 147 (449)
T ss_dssp HTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCS---CBTTTSTTEECSCSTHHHHHHHHHHSSSC
T ss_pred hcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHHhcC
Confidence 789999999999999988888888777 48999999999999998887 67777778998888888888888776556
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++. |++++++.+.+++. ++.+..+
T Consensus 148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~--~~~v~~v 224 (449)
T 3kd9_A 148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEG--EERVEKV 224 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEEC--SSSCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEec--cCcEEEE
Confidence 78999999999999999999999999999999999998768999999999999999 99999999999986 3333333
Q ss_pred EeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHH
Q 013914 243 KLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK 320 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~ 320 (434)
+.+++++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+.+++++..|..
T Consensus 225 -~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~ 303 (449)
T 3kd9_A 225 -VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNK 303 (449)
T ss_dssp -EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHH
T ss_pred -EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHH
Confidence 456778999999999999999988754 6666 6788999999999999999999999887766666556688999999
Q ss_pred HHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE---EcCCCcc----cCCCcEEEEEEe
Q 013914 321 SAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL---FGDNDLA----SATHKFGTYWIK 387 (434)
Q Consensus 321 ~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~---~~~~~~~----~~~~~~~~~~~~ 387 (434)
||+.+|+||++... ......|+.+..+++..+..+|+++ |..+. +....+. ..+.+|+|++++
T Consensus 304 ~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~kli~~ 379 (449)
T 3kd9_A 304 MGYVAGSNIAGKEL----HFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIWLKGVVD 379 (449)
T ss_dssp HHHHHHHHHTTCCC----CCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEEEEEEEE
T ss_pred HHHHHHHHhcCCCc----cCCCcccceEEEEcCcEEEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEEEEEEEE
Confidence 99999999997542 2223456777888888888889875 22221 1111111 235678898874
Q ss_pred --CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhh-hccCCCccc
Q 013914 388 --DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFAS 432 (434)
Q Consensus 388 --~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~ 432 (434)
+++|||+|++|+++.++ +.++.||++++|++|+..+ ..+.++|.+
T Consensus 380 ~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~ 428 (449)
T 3kd9_A 380 NETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAP 428 (449)
T ss_dssp TTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBC
T ss_pred CCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCC
Confidence 59999999999998885 9999999999999977655 334444443
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-53 Score=415.23 Aligned_cols=406 Identities=20% Similarity=0.302 Sum_probs=318.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+||+|||||+||+++|..|++. |.+ |+|||+++..+|..+.+.. ++... .... .+. .......++++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~g~-~~~~-~~~-----~~~~~~~~~~~ 69 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDAD---VTAYEMNDNISFLSCGIAL-YLGKE-IKNN-DPR-----GLFYSSPEELS 69 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEEESSSCCCBCGGGHHH-HHTTC-BGGG-CGG-----GGBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCcccccchh-hhcCC-cccC-CHH-----HhhhcCHHHHH
Confidence 5899999999999999999998 655 9999999866554332211 11110 0000 000 01123456778
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccC-----CcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLSAT-----GLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~-----~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++.++.++.++.+.+++.+.+ +.++.||++|+|||++|+.|+ ++|.+..++++++++.+...+.+.+
T Consensus 70 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~ 146 (452)
T 2cdu_A 70 NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP---IPGIDSSRVYLCKNYNDAKKLFEEA 146 (452)
T ss_dssp HTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred HcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCC---CCCCCCCCEEEeCcHHHHHHHHHHh
Confidence 88999999888999998888887754 457999999999999998887 5776667899999999888887765
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
. .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++. ++++
T Consensus 147 ~--~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~ 223 (452)
T 2cdu_A 147 P--KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEE-VDDE 223 (452)
T ss_dssp G--GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEE-ETTE
T ss_pred c--cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEc-CCCe
Confidence 4 579999999999999999999999999999999999998668999999999999999999999999999986 3455
Q ss_pred EEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHH
Q 013914 239 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317 (434)
Q Consensus 239 v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 317 (434)
+..+.+ +|+++++|.||+|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+....+.+.+++++..
T Consensus 224 v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 302 (452)
T 2cdu_A 224 IITKTL-DGKEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN 302 (452)
T ss_dssp EEEEET-TSCEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred EEEEEe-CCCEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence 545555 78899999999999999999987655555 5788999999999999999999999987655565555678999
Q ss_pred HHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEE---EEcCCCcc----cCCCcEEEE
Q 013914 318 ARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTV---LFGDNDLA----SATHKFGTY 384 (434)
Q Consensus 318 A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~---~~~~~~~~----~~~~~~~~~ 384 (434)
|..||+.||+||++.. .....+.|++++.+++..+..+|.++ +..+ .+.+..+. .....|+|+
T Consensus 303 A~~~g~~aa~~i~g~~----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k~ 378 (452)
T 2cdu_A 303 AVRQGRLVGLNLTEDK----VKDMGTQSSSGLKLYGRTYVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEVLMSL 378 (452)
T ss_dssp HHHHHHHHHHTSSSCC----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCC----CcCCCccceEEEEECCeeeEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceEEEEE
Confidence 9999999999998742 12233456778888888888999774 2111 12221111 123468888
Q ss_pred EE--eCCEEEEEEEecC-CHHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013914 385 WI--KDGKVVGVFLESG-TPEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK 433 (434)
Q Consensus 385 ~~--~~~~ilG~~~~g~-~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~~ 433 (434)
++ ++++|||+|++|+ ++.++ +.++.+|++++|++|+..+ ..+.++|.+.
T Consensus 379 ~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~ 432 (452)
T 2cdu_A 379 VYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRP 432 (452)
T ss_dssp EECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCS
T ss_pred EEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCch
Confidence 77 4799999999999 77775 9999999999999988765 4667776653
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-52 Score=416.87 Aligned_cols=398 Identities=22% Similarity=0.300 Sum_probs=316.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH-hh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-KE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (434)
+||+|||||+||++||.+|++++. ..+|+|||+++..+|.++.+...+....... . .......+++ ++
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~-----~-----~~~~~~~~~~~~~ 70 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPYHISGEIAQR-----S-----ALVLQTPESFKAR 70 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHHTSSSCCG-----G-----GGBCCCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchHHhcCCcCCh-----H-----HhhccCHHHHHHh
Confidence 589999999999999999999842 3459999999887776543322111100000 0 0012334444 44
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccC---Cc--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++.+++|+.++++.+.+.+.+ +. ++.||+||+|||++|+.|+ ++|.+..++++.++..+...+.+.+.
T Consensus 71 ~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---ipG~~~~~v~~~~~~~~~~~l~~~~~ 147 (565)
T 3ntd_A 71 FNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP---IPGVDNPLTHSLRNIPDMDRILQTIQ 147 (565)
T ss_dssp HCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred cCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCC---CCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence 7999999999999999999887653 43 7899999999999998887 67877788999999999888887776
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-----
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN----- 234 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~----- 234 (434)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.++++...
T Consensus 148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~ 226 (565)
T 3ntd_A 148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTP-VDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHV 226 (565)
T ss_dssp HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCC
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchh-cCHHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccc
Confidence 667899999999999999999999999999999999999884 89999999999999999999999999999862
Q ss_pred -------------CCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccc
Q 013914 235 -------------ADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVA 299 (434)
Q Consensus 235 -------------~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~ 299 (434)
.++. ..+.+.+|+++++|.||+|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+
T Consensus 227 ~~~~~~~~~~~~~~~~~-~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~ 305 (565)
T 3ntd_A 227 ASDAAGEDTAHQHIKGH-LSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAV 305 (565)
T ss_dssp CCGGGTCCCTTCCTTCE-EEEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGB
T ss_pred cccccccccccccCCCc-EEEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeeeE
Confidence 2333 3567788999999999999999999987744 6666 6789999999999999999999999
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCC-CCeeEEeccCceeEEeecCCCC---------EEEE
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDY-LPYFYSRAFDLSWQFYGDNVGD---------TVLF 369 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~g~~~~~---------~~~~ 369 (434)
..+....+.+.+++++..|..||+.||+||++.. ..|.. .|+.++.+++..+..+|+++.+ ...+
T Consensus 306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~ 380 (565)
T 3ntd_A 306 EEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-----ERYQGTQGTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYV 380 (565)
T ss_dssp CEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEE
T ss_pred eeccccCCceeecccHHHHHHHHHHHHHHhcCCC-----ccCCCcccceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEE
Confidence 8877666766666889999999999999999754 23443 3455677788888899987521 1222
Q ss_pred cCCCcc----cCCCcEEEEEE--eCCEEEEEEEecCCH-HH-HHHHHHHHHcCCCCCChhhhh
Q 013914 370 GDNDLA----SATHKFGTYWI--KDGKVVGVFLESGTP-EE-NKAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 370 ~~~~~~----~~~~~~~~~~~--~~~~ilG~~~~g~~~-~~-~~~~~~~i~~~~~~~~~~~l~ 424 (434)
....+. ..+.+|+|+++ ++++|||+|++|+++ .| ++.++.||++++|++||..+.
T Consensus 381 ~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~ 443 (565)
T 3ntd_A 381 HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLE 443 (565)
T ss_dssp EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCC
T ss_pred ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhh
Confidence 111111 23567889888 579999999999998 67 599999999999999777654
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-51 Score=412.36 Aligned_cols=405 Identities=22% Similarity=0.287 Sum_probs=318.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++||+|||||+||++||.+|++.+. ..+|+|||+++..+|..+.+...+...... ... ........+.+
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~~~~g~~~~-----~~~----~~~~~~~~~~~ 104 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPYYIGGVITE-----RQK----LLVQTVERMSK 104 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHHHHTTSSCC-----GGG----GBSSCHHHHHH
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCchhhcCcCCC-----hHH----hhccCHHHHHH
Confidence 35799999999999999999999831 234999999988777654332211110000 000 00123344556
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEcc---CCc--EEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLSA---TGL--IFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~---~~~--~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~ 157 (434)
+.+++++.++.|+.++++.+.+.+. ++. ++.||+||+|||++|+.|+ ++|. +..++++.++..+...+...
T Consensus 105 ~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~~v~~~~~~~~~~~~~~~ 181 (588)
T 3ics_A 105 RFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS---IPGIEEAKALFTLRNVPDTDRIKAY 181 (588)
T ss_dssp HTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CTTTTTCTTEEECSSHHHHHHHHHH
T ss_pred hcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCC---CCCcccCCCeEEeCCHHHHHHHHHH
Confidence 7899999999999999999988764 455 7899999999999998887 5776 56789999999999888887
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g 237 (434)
+....+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+++++++|++++.+ ++
T Consensus 182 l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~ 259 (588)
T 3ics_A 182 IDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVFEDGVDALEEN-GA 259 (588)
T ss_dssp HHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GT
T ss_pred HhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEECCeEEEEecC-CC
Confidence 76557899999999999999999999999999999999999987 89999999999999999999999999999863 22
Q ss_pred cEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccH
Q 013914 238 EVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 315 (434)
Q Consensus 238 ~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~ 315 (434)
.+.+.+|+++++|.||+|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+....+.+.+++++
T Consensus 260 ---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (588)
T 3ics_A 260 ---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLA 336 (588)
T ss_dssp ---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCH
T ss_pred ---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCcccccccH
Confidence 477889999999999999999999987743 6666 67899999999999999999999998777666666566889
Q ss_pred HHHHHHHHHHHHHHhc-cCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE---EEEcCCCc----ccCCCcE
Q 013914 316 DHARKSAEQAVKTIMA-TEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT---VLFGDNDL----ASATHKF 381 (434)
Q Consensus 316 ~~A~~~g~~aa~~i~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~---~~~~~~~~----~~~~~~~ 381 (434)
..|..||+.||+||++ .. ......+|+.+..+++..+..+|+++ |.. ..+..... ...+.+|
T Consensus 337 ~~A~~~g~~aa~~i~g~~~----~~~~~~~~~~~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 412 (588)
T 3ics_A 337 WPANRQGRMLADIIHGHTD----SLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQANSHAGYYPNATPVL 412 (588)
T ss_dssp HHHHHHHHHHHHHHTTCCS----SCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEEEEESSCTTSTTCCEEE
T ss_pred HHHHHHHHHHHHHhcCCCc----cccCCcccceEEEECCeEEEEecCCHHHHHHcCCCeEEEEEecCCccccCCCCceEE
Confidence 9999999999999997 32 12334567777777788888889875 221 11111111 1245678
Q ss_pred EEEEE--eCCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhhhccC-CCc
Q 013914 382 GTYWI--KDGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVLKNEG-LSF 430 (434)
Q Consensus 382 ~~~~~--~~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l~~~~-~~~ 430 (434)
+|+++ ++++|||+|++|+. +.+ ++.++.||++++|++||..+.-+. ++|
T Consensus 413 ~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~ 466 (588)
T 3ics_A 413 IKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSYAPPY 466 (588)
T ss_dssp EEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCCSTTT
T ss_pred EEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhccCCCc
Confidence 89888 57999999999985 666 599999999999999877655433 444
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-52 Score=405.19 Aligned_cols=404 Identities=22% Similarity=0.286 Sum_probs=315.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+||||||||+||+++|..|++. |.+ |+|||+++..+|..+.+.. ++... ..... .......++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~~-----~~~~~~~~~~~ 67 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAE---IQWYEKGDFISFLSAGMQL-YLEGK----VKDVN-----SVRYMTGEKME 67 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSE---EEEEESSSSSSBCGGGHHH-HHTTS----SCCGG-----GSBSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCe---EEEEECCCccCcccccchh-hhcCc----cCCHH-----HhhcCCHHHHH
Confidence 3899999999999999999998 554 9999999866554332211 11110 00000 01234456777
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccC---Cc--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++.++.++.++.+.+++.+.+ |+ ++.||++|+|||++|+.|+ ++|.+.++++++++.+++..+.+.+
T Consensus 68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~~~ 144 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELD---IPGKDLDNIYLMRGRQWAIKLKQKT 144 (447)
T ss_dssp HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---STTTTSBSEECCCHHHHHHHHHHHH
T ss_pred HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCC---CCCCCCCCeEEECCHHHHHHHHHHh
Confidence 88999999989999999998887754 54 4899999999999998887 5776667799888889888887777
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
....+++++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++++.+.+.+.+++.||+++++++|++++. ++.
T Consensus 145 ~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~ 222 (447)
T 1nhp_A 145 VDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG--DGR 222 (447)
T ss_dssp TCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSB
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCc
Confidence 543589999999999999999999999999999999999988668999999999999999999999999999986 344
Q ss_pred EEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHH
Q 013914 239 VKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDH 317 (434)
Q Consensus 239 v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~ 317 (434)
+..+.+ +++++++|.|++|+|++|++++++..+.. .+|+|.||+++||+.|+|||+|||+..+....+.+.++.++..
T Consensus 223 v~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~ 301 (447)
T 1nhp_A 223 VQKVVT-DKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN 301 (447)
T ss_dssp CCEEEE-SSCEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred EEEEEE-CCCEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence 444555 45689999999999999999887655555 5688999999999999999999999876655555555678999
Q ss_pred HHHHHHHHHHHHhccCCCCcccCC-CCCCeeEEeccCceeEEeecCCC------C--E-EEEcCCCcc----cCCCcEEE
Q 013914 318 ARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNVG------D--T-VLFGDNDLA----SATHKFGT 383 (434)
Q Consensus 318 A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~g~~~~------~--~-~~~~~~~~~----~~~~~~~~ 383 (434)
|..||+.||.||++.. ..+ ...++.+..+++..+..+|.++. . . ..+.+..+. .....|+|
T Consensus 302 A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~k 376 (447)
T 1nhp_A 302 ARKQGRFAVKNLEEPV-----KPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFK 376 (447)
T ss_dssp HHHHHHHHHHTSSSCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEE
T ss_pred HHHHHHHHHHhhcCCC-----CCCCCccccEEEEECCeeeEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceEEEE
Confidence 9999999999998742 223 34566777888888888897642 1 1 112111111 23456888
Q ss_pred EEEe--CCEEEEEEEecCC-HHH-HHHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013914 384 YWIK--DGKVVGVFLESGT-PEE-NKAIAKVARVQPSVESLDVL-KNEGLSFASK 433 (434)
Q Consensus 384 ~~~~--~~~ilG~~~~g~~-~~~-~~~~~~~i~~~~~~~~~~~l-~~~~~~~~~~ 433 (434)
++++ +++|||+|++|+. +.+ ++.++.+|++++|++|+..+ ..+.++|.+.
T Consensus 377 ~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~ 431 (447)
T 1nhp_A 377 LVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKP 431 (447)
T ss_dssp EEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCS
T ss_pred EEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCc
Confidence 8773 7999999999998 777 49999999999999988775 4567777654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=397.68 Aligned_cols=404 Identities=21% Similarity=0.298 Sum_probs=313.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
++||+|||||+||+++|..|++. |.+ |+|||+++..+|..+.+.. ++... ...+.. ......+.+
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~---V~lie~~~~~~~~~~~~~~-~~~~~----~~~~~~-----l~~~~~~~~ 102 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENAN---VVTLEKGEIYSYAQCGLPY-VISGA----IASTEK-----LIARNVKTF 102 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCE---EEEECSSSCCSBCGGGHHH-HHTTS----SSCGGG-----GBSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCc---EEEEECCCCCCCCCCCcch-hhcCC----cCCHHH-----hhhcCHHHH
Confidence 46999999999999999999997 554 9999999876665443321 11110 000100 012334555
Q ss_pred -hhcCcEEEcCCeeEEEECCCCEEEccC---Cc--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHH
Q 013914 83 -KEKGIELILSTEIVRADIASKTLLSAT---GL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 83 -~~~~v~~~~~~~v~~i~~~~~~v~~~~---~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~ 156 (434)
+..+++++.++.++.++.+.+++.+.+ ++ ++.||+||+|||++|+.|+ ++|.+..+++++++.+++..+.+
T Consensus 103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~~~~v~~~~~~~~~~~l~~ 179 (480)
T 3cgb_A 103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE---WEGRDLQGVHLLKTIPDAERILK 179 (480)
T ss_dssp HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCC---CBTTTSBTEECCSSHHHHHHHHH
T ss_pred HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCC---CCCccCCCEEEeCCHHHHHHHHH
Confidence 445999999989999999888887653 65 7999999999999998887 57766678998899999988888
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
.+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+++. +++++.+.+.+.+++.||+++++++|+++.. +
T Consensus 180 ~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~ 256 (480)
T 3cgb_A 180 TLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTI-YDGDMAEYIYKEADKHHIEILTNENVKAFKG--N 256 (480)
T ss_dssp HHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSS-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEE--S
T ss_pred HhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhc-CCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc--C
Confidence 776546899999999999999999999999999999999998885 7999999999999999999999999999987 4
Q ss_pred CcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceeccc
Q 013914 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEH 314 (434)
Q Consensus 237 g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~ 314 (434)
+.+..+.+++ .++++|.||+|+|++|++++++. ++.. .+|+|.||+++||++|+|||+|||+..+....+.+.++.+
T Consensus 257 ~~v~~v~~~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~ 335 (480)
T 3cgb_A 257 ERVEAVETDK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPI 335 (480)
T ss_dssp SBEEEEEETT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCC
T ss_pred CcEEEEEECC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecch
Confidence 5555566654 58999999999999999987754 5665 5789999999999999999999999877655555555578
Q ss_pred HHHHHHHHHHHHHHHhccCCCCcccCC-CCCCeeEEeccCceeEEeecCCC------CEE---EEcCCCcc----cCCCc
Q 013914 315 VDHARKSAEQAVKTIMATEGGKTVTGY-DYLPYFYSRAFDLSWQFYGDNVG------DTV---LFGDNDLA----SATHK 380 (434)
Q Consensus 315 ~~~A~~~g~~aa~~i~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~g~~~~------~~~---~~~~~~~~----~~~~~ 380 (434)
+..|..||+.||.||++.. ..| .+.++.+..+++..+..+|.++. ..+ .+...... .....
T Consensus 336 ~~~A~~qg~~aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 410 (480)
T 3cgb_A 336 GTTANKQGRLAGLNMLDKR-----RAFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAKPL 410 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCC-----CCCCCBCCCEEEEETTEEEEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEE
T ss_pred HHHHHHHHHHHHHHhcCCC-----ccCCCccceeEEEECCcEEEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCceE
Confidence 9999999999999998743 233 23345667777888888897642 111 11111111 22456
Q ss_pred EEEEEE--eCCEEEEEEEecCC-HHHH-HHHHHHHHcCCCCCChhhh-hccCCCcccc
Q 013914 381 FGTYWI--KDGKVVGVFLESGT-PEEN-KAIAKVARVQPSVESLDVL-KNEGLSFASK 433 (434)
Q Consensus 381 ~~~~~~--~~~~ilG~~~~g~~-~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~~~~~~ 433 (434)
|+|+++ ++++|||++++|+. +.++ +.++.||++++|++|+..+ ..+.++|.+.
T Consensus 411 ~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~ 468 (480)
T 3cgb_A 411 YLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSV 468 (480)
T ss_dssp EEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred EEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCc
Confidence 888877 47999999999998 8774 9999999999999988775 3466776653
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-50 Score=380.43 Aligned_cols=352 Identities=24% Similarity=0.372 Sum_probs=277.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.||+|||||+||++||..|++.| + |+|||+++..+|.++.+++.+..... +. .......+++++.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~---V~lie~~~~~~~~~~~l~~~~~g~~~------~~-----~~~~~~~~~~~~~ 73 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-E---VTVIDKEPVPYYSKPMLSHYIAGFIP------RN-----RLFPYSLDWYRKR 73 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-E---EEEECSSSSCCCCSTTHHHHHTTSSC------GG-----GGCSSCHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-C---EEEEECCCCCccccchhHHHHhCCCC------HH-----HhccCCHHHHHhC
Confidence 58999999999999999999887 5 99999998877777666543211100 00 0123456778888
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGK 165 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~ 165 (434)
+++++.++.++.+++..++|. .+++++.||+||||||++|+.|+ ++| .++++++++..++..+.+.+. ++++
T Consensus 74 ~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~~p~---i~G--~~~v~~~~~~~~~~~l~~~~~--~~~~ 145 (367)
T 1xhc_A 74 GIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAREPQ---IKG--KEYLLTLRTIFDADRIKESIE--NSGE 145 (367)
T ss_dssp TEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEECCCC---SBT--GGGEECCCSHHHHHHHHHHHH--HHSE
T ss_pred CcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCCCCC---CCC--cCCEEEEcCHHHHHHHHHHhh--cCCc
Confidence 999999988999999988888 67788999999999999998887 566 356888889999988877764 2589
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++|||+|++|+|+|..|.+.|.+|+++++.+++++ +++++.+.+.+.+++.||+++++++|++++. ..+.++
T Consensus 146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~------~~v~~~ 217 (367)
T 1xhc_A 146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEANE------EGVLTN 217 (367)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEECSCCEEEECS------SEEEET
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEcCCEEEEEEe------eEEEEC
Confidence 99999999999999999999999999999999988 7999999999999999999999999999963 147788
Q ss_pred CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHH
Q 013914 246 DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQ 324 (434)
Q Consensus 246 ~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 324 (434)
+|+ +++|.|++|+|++||+++++. ++..+ ++|.||+++||+.|+|||+|||+..... ...++..|..||+.
T Consensus 218 ~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~------~~~~~~~A~~qg~~ 289 (367)
T 1xhc_A 218 SGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI------IAGTAKAAMEQARV 289 (367)
T ss_dssp TEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB------CCCSHHHHHHHHHH
T ss_pred CCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCC------CccHHHHHHHHHHH
Confidence 887 999999999999999987643 55555 4599999999999999999999975321 11578899999999
Q ss_pred HHHHHhccCCCCcccCCCCC-CeeEEeccCceeEEeecCCCCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHH
Q 013914 325 AVKTIMATEGGKTVTGYDYL-PYFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEE 403 (434)
Q Consensus 325 aa~~i~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~ 403 (434)
||+||.+.. ..|... |+.+..+++..+..+|.++.+.... ..|+|+++++++|+|++++|+.+ +
T Consensus 290 aa~~i~g~~-----~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---------~~~~k~~~~~~~ilG~~~~g~~~-~ 354 (367)
T 1xhc_A 290 LADILKGEP-----RRYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI---------EDNTKVFYENGKIIGAVVFNDIR-K 354 (367)
T ss_dssp HHHHHTTCC-----CCCCSSCCEEEEEETTEEEEEEECCSSCEEEE---------ETTEEEEC-----CEEEEESCHH-H
T ss_pred HHHHhcCCC-----ccCCCCCCceEEEECCceEEEECCCCCCCccc---------ceEEEEEEECCEEEEEEEECChH-H
Confidence 999998753 345544 4444577888888999887643221 46889888889999999999754 3
Q ss_pred HHHHHHHH
Q 013914 404 NKAIAKVA 411 (434)
Q Consensus 404 ~~~~~~~i 411 (434)
...+..+|
T Consensus 355 ~~~~~~~i 362 (367)
T 1xhc_A 355 ATKLEKEI 362 (367)
T ss_dssp HHHHC---
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=378.67 Aligned_cols=366 Identities=22% Similarity=0.308 Sum_probs=286.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+.++||+|||||+||+++|..|++.|. ..+|+++|++....|.++.++..+........+ .......++
T Consensus 2 ~~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~ 70 (384)
T 2v3a_A 2 SERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSKNKDADGL----------AMAEPGAMA 70 (384)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTTTCCHHHH----------EEECHHHHH
T ss_pred CCCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhCCCCHHHh----------hccCHHHHH
Confidence 346899999999999999999999885 345999999876556555444322111000000 001234456
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
++.+++++.++.+..++.+.+++.+.+ .++.||++|+|||+.|+.|+ ++|.+..++++.+++.++..+.+.+. .
T Consensus 71 ~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~~p~---i~g~~~~~v~~~~~~~~~~~~~~~~~--~ 144 (384)
T 2v3a_A 71 EQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPIRVP---VEGDAQDALYPINDLEDYARFRQAAA--G 144 (384)
T ss_dssp HHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEECCCC---CBSTTTTCEEECSSHHHHHHHHHHHT--T
T ss_pred HhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcCCCC---CCCcCcCCEEEECCHHHHHHHHHhhc--c
Confidence 778999999888999998888888764 47999999999999998877 57766578999999999888877775 4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++|.+++.+++ ...+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~--~~~v 222 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGE--GLEA 222 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETT--EEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCC--EEEE
Confidence 79999999999999999999999999999999999988767999999999999999999999999999987322 3578
Q ss_pred EeCCCcEEECCEEEEcccCccChhhhh-ccccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHH
Q 013914 243 KLKDGRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKS 321 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 321 (434)
.+.+|+++++|.|++|+|++|++++++ .++..++| |.||+++||+.|+|||+|||+..... ..+++..|..|
T Consensus 223 ~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~------~~~~~~~a~~~ 295 (384)
T 2v3a_A 223 HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGL------NLLYVMPLMAC 295 (384)
T ss_dssp EETTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTB------CCCSHHHHHHH
T ss_pred EECCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCC------CcchHHHHHHH
Confidence 888999999999999999999998764 36666656 99999999999999999999975322 12578889999
Q ss_pred HHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCCC---EEEEcCCCcccCCCcEEEEEE-eCCEEEEEEEe
Q 013914 322 AEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGD---TVLFGDNDLASATHKFGTYWI-KDGKVVGVFLE 397 (434)
Q Consensus 322 g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~ilG~~~~ 397 (434)
|+.+|+||++.. ....|..+|+++.+ +++.+...|..... ....++ ..+|.+++. ++++|+|++++
T Consensus 296 g~~~a~~i~g~~---~~~~~~~~p~~~~~-~~~~~~~~g~~~~~~~~~~~~~~------~~g~~~~~~~~~~~i~G~~~~ 365 (384)
T 2v3a_A 296 ARALAQTLAGNP---SQVAYGPMPVTVKT-PACPLVVSPPPRGMDGQWLVEGS------GTDLKVLCRDTAGRVIGYALT 365 (384)
T ss_dssp HHHHHHHHTTCC---CCCCCCCCCEEECC-TTSCEEEECCCTTCCCEEEEEEE------TTEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHhcCCC---ccCCCCCcceEEEE-CCeeEEEecCCCCCCceEEEEec------CCcEEEEEEccCCEEEEEEEE
Confidence 999999999753 22456677876544 34566667765432 222222 346777777 48999999999
Q ss_pred cCCHHHH
Q 013914 398 SGTPEEN 404 (434)
Q Consensus 398 g~~~~~~ 404 (434)
|++++|+
T Consensus 366 g~~a~e~ 372 (384)
T 2v3a_A 366 GAAVNEK 372 (384)
T ss_dssp GGGGGGH
T ss_pred CcchHHH
Confidence 9999986
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=390.63 Aligned_cols=405 Identities=23% Similarity=0.342 Sum_probs=308.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCC-----CCCCcc-----cccCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA-----RLPGFH-----VCVGS 72 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~ 72 (434)
+.++||||||||+||++||..|++.+. ..+|+|||+++..+|.+|++++.++...... .+.++. .....
T Consensus 9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (493)
T 1m6i_A 9 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 87 (493)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccc
Confidence 346899999999999999999998742 3459999999988999988888776543210 000000 00000
Q ss_pred C-CCCCChhh--HhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC----CCCeEEe
Q 013914 73 G-GERLLPEW--YKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD----AKNIFYL 145 (434)
Q Consensus 73 ~-~~~~~~~~--~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~----~~~v~~~ 145 (434)
. .......+ +.+.+++++.++.|+.++++.++|.+.+|+++.||+||||||++|+.++. ++.. ..+++++
T Consensus 88 ~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~~---~~~~~~~~~~~v~~~ 164 (493)
T 1m6i_A 88 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSA---IDRAGAEVKSRTTLF 164 (493)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCHH---HHTSCHHHHHTEEEC
T ss_pred hHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCCC---cccccccccCceEEE
Confidence 0 00000111 12468999999999999999999999999899999999999999987663 3211 2468888
Q ss_pred cCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHh----CCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcE
Q 013914 146 REIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221 (434)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~----~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~ 221 (434)
++..++..+.+.+. .+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++++.+++++.+.+.+.++++||+
T Consensus 165 ~~~~d~~~l~~~~~--~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~ 242 (493)
T 1m6i_A 165 RKIGDFRSLEKISR--EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVK 242 (493)
T ss_dssp CSHHHHHHHHHHHH--HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred cCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCE
Confidence 89999888877665 47899999999999999999887 5789999999888887778999999999999999999
Q ss_pred EEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-ccccc--CCcEEeCCCCCCCCCcEEEeccc
Q 013914 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN--KGGIETDDFFKTSADDVYAVGDV 298 (434)
Q Consensus 222 ~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~--~g~i~vd~~~~t~~~~iya~GD~ 298 (434)
+++++.|++++.+ ++. ..+.+.+|+++++|.||+|+|.+||+++++. ++..+ +|+|.||++||| .|+|||+|||
T Consensus 243 v~~~~~V~~i~~~-~~~-~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~ 319 (493)
T 1m6i_A 243 VMPNAIVQSVGVS-SGK-LLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDA 319 (493)
T ss_dssp EECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGG
T ss_pred EEeCCEEEEEEec-CCe-EEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeee
Confidence 9999999999862 333 4688899999999999999999999988754 56664 589999999998 6999999999
Q ss_pred ccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEecc-CceeEEeecCCCCEEEEc-------
Q 013914 299 ATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAF-DLSWQFYGDNVGDTVLFG------- 370 (434)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~g~~~~~~~~~~------- 370 (434)
+..+....+.. ++++|..|..||+.||.||++.. .+|...|++|+.++ +..+..+|.........|
T Consensus 320 a~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g~~-----~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~ 393 (493)
T 1m6i_A 320 ACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAA-----KPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATA 393 (493)
T ss_dssp EEEEETTTEEE-CCCCHHHHHHHHHHHHHHHTSCC-----CCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCT
T ss_pred EeccCcccCcc-ccchHHHHHHHHHHHHHHhcCCC-----CCcCCcCceeeeeccCcceEEEeccCCCcceEEeeccccc
Confidence 99776544443 55789999999999999999753 67889999999986 455555553210000000
Q ss_pred ------------------------------------CCC--c-ccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHH
Q 013914 371 ------------------------------------DND--L-ASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVA 411 (434)
Q Consensus 371 ------------------------------------~~~--~-~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i 411 (434)
+.+ . .....+|..+++++|+|+|+.++|. ..++..+..+|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~li 472 (493)
T 1m6i_A 394 QDNPKSATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVLWNI-FNRMPIARKII 472 (493)
T ss_dssp TCSHHHHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEEESC-CSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEEecC-cchHHHHHHHH
Confidence 000 0 0012345678889999999999984 56788899999
Q ss_pred HcCCCCCChhhh
Q 013914 412 RVQPSVESLDVL 423 (434)
Q Consensus 412 ~~~~~~~~~~~l 423 (434)
+.+.++.++..+
T Consensus 473 ~~~~~~~~~~~~ 484 (493)
T 1m6i_A 473 KDGEQHEDLNEV 484 (493)
T ss_dssp HHCCBCSCSTTG
T ss_pred hCCCCCCCHHHH
Confidence 999999888765
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=392.56 Aligned_cols=399 Identities=20% Similarity=0.249 Sum_probs=289.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCccCccccCCCC-------CCC---CCCccc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEG-------TAR---LPGFHV 68 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~-------~~~---~~~~~~ 68 (434)
++++||+|||||++|+++|.+|++.|.+ |+|||+++..+- ..+..++.++.... ... ++.+..
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~ 117 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE 117 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence 4568999999999999999999999886 999999873210 01111121110000 000 000000
Q ss_pred c------cCCCCCCCCh---hhH-----hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCC
Q 013914 69 C------VGSGGERLLP---EWY-----KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 69 ~------~~~~~~~~~~---~~~-----~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
. .......... .++ ++.+++++....+..++. +++.+. +..+.||++|+|||+.|..|+ +
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~~p~---i 191 (523)
T 1mo9_A 118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPGTLD---V 191 (523)
T ss_dssp CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECCCCC---S
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCCCCC---C
Confidence 0 0000000022 455 677899983347787775 567665 678999999999999998887 5
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+..++++.. ++. +.++..++++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 192 ~G~~~~~v~~~~---~~~---~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 264 (523)
T 1mo9_A 192 PGVNAKGVFDHA---TLV---EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR 264 (523)
T ss_dssp TTTTSBTEEEHH---HHH---HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred CCcccCcEeeHH---HHH---HHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence 776655676443 322 1122222399999999999999999999999999999999999986 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcE--EEEEeCCCc-EEECCEEEEcccCccChh-hhh-ccccc-cCCcEEeCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEV--KEVKLKDGR-TLEADIVVVGVGGRPLIS-LFK-GQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v--~~v~~~~g~-~~~~D~vi~a~G~~p~~~-~~~-~~~~~-~~g~i~vd~~~~t~ 288 (434)
+++.||+++++++|+++..++++.+ ..+++.+|+ ++++|.||+|+|++|+++ +++ .++.. ++|+|.||+++||+
T Consensus 265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t~ 344 (523)
T 1mo9_A 265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQTS 344 (523)
T ss_dssp HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBCS
T ss_pred HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCccC
Confidence 9999999999999999987445543 467788887 899999999999999998 564 46776 57889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-----
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----- 363 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----- 363 (434)
+|+|||+|||++.+ ..+..|..||+.||.||++... ...+..+|+++++.++ +..+|.++
T Consensus 345 ~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~~~~--~a~vG~~e~~a~~ 409 (523)
T 1mo9_A 345 VPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEKI---SYTPKNYPDFLHTHYE--VSFLGMGEEEARA 409 (523)
T ss_dssp STTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCCC---CCCCCSCCEEEESSSE--EEEEECCHHHHHH
T ss_pred CCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCeEEECCCc--eEEEeCCHHHHHh
Confidence 99999999999764 4567799999999999997431 1346778887776554 55557654
Q ss_pred -CCEEEEcC--C-C----------------c---c--cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCC
Q 013914 364 -GDTVLFGD--N-D----------------L---A--SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQP 415 (434)
Q Consensus 364 -~~~~~~~~--~-~----------------~---~--~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~ 415 (434)
|..+.... . . + . ....+|+|+++ ++++|||+|++|+.+.++ +.++.||++++
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~ 489 (523)
T 1mo9_A 410 AGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL 489 (523)
T ss_dssp TTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 22222211 1 1 0 0 23457899888 479999999999998875 99999999999
Q ss_pred CCCChhhh--hccCCCccc
Q 013914 416 SVESLDVL--KNEGLSFAS 432 (434)
Q Consensus 416 ~~~~~~~l--~~~~~~~~~ 432 (434)
|++|+..+ .-+.+++.+
T Consensus 490 t~~~l~~~~~~~~~Pt~~e 508 (523)
T 1mo9_A 490 TVDELGDMDELFLNPTHFI 508 (523)
T ss_dssp BHHHHHTSCCCSSCSCCHH
T ss_pred CHHHHHhCCcceECCCHHH
Confidence 99988776 555555543
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-50 Score=391.69 Aligned_cols=400 Identities=16% Similarity=0.226 Sum_probs=287.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCccCccccCCC----CCCCCCCccccc------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFPE----GTARLPGFHVCV------ 70 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~------ 70 (434)
+++||+|||||+||+++|..|++.|.+ |+|||++...+- ..|..++.++... .......+....
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAK---TLLVEAKALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCc---EEEEeCCCcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 468999999999999999999999887 999999853110 0011111111000 000000000000
Q ss_pred -CCC-CC---------------CCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcccc-c
Q 013914 71 -GSG-GE---------------RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVLRL-T 130 (434)
Q Consensus 71 -~~~-~~---------------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~-~ 130 (434)
... .. ......+++.+++++.+ .+..++.....+...+++ ++.||+||+|||++|..| +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence 000 00 01123345678999987 566665544455556665 799999999999999887 6
Q ss_pred CCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHH
Q 013914 131 DFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAF 210 (434)
Q Consensus 131 ~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~ 210 (434)
++|.+ .+ .+..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.
T Consensus 166 ---i~g~~--~~---~~~~~~~~l----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~ 231 (479)
T 2hqm_A 166 ---IPGFE--LG---TDSDGFFRL----E-EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRK-FDECIQNT 231 (479)
T ss_dssp ---STTGG--GS---BCHHHHHHC----S-SCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHH
T ss_pred ---CCCcc--cc---cchHHHhcc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccc-cCHHHHHH
Confidence 46542 12 233444332 1 25799999999999999999999999999999999999886 89999999
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChhh-hh-ccccc-cCCcEEeCCCCC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLISL-FK-GQVAE-NKGGIETDDFFK 286 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~~~-~~-~~~~~-~~g~i~vd~~~~ 286 (434)
+.+.+++.||+++++++|++++.++++.+..+.+.+| +++++|.|++|+|++||+.+ ++ .++.. ++|+|.||+++|
T Consensus 232 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~ 311 (479)
T 2hqm_A 232 ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQN 311 (479)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCB
T ss_pred HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCc
Confidence 9999999999999999999998744443457888899 78999999999999999965 43 46666 578999999999
Q ss_pred CCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC-CCcccCCCCCCeeEEeccCceeEEeecCC--
Q 013914 287 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG-GKTVTGYDYLPYFYSRAFDLSWQFYGDNV-- 363 (434)
Q Consensus 287 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-- 363 (434)
|++|+|||+|||++.+ .++..|..||+.||.||++... ......|..+|+..++.+++..+ |+++
T Consensus 312 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~v--Gl~e~~ 379 (479)
T 2hqm_A 312 TNVPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSI--GISEKE 379 (479)
T ss_dssp CSSTTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEE--ECCHHH
T ss_pred cCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEE--eCCHHH
Confidence 9999999999998643 5678899999999999997531 01125666788776665555544 6543
Q ss_pred -----C-CEEEE-----cCCCc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 -----G-DTVLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 -----~-~~~~~-----~~~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
+ ..+.. ....+ ...+..|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+
T Consensus 380 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~ 459 (479)
T 2hqm_A 380 AIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAI 459 (479)
T ss_dssp HHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred HHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCC
Confidence 2 11111 11111 123567899888 479999999999998885 9999999999999988887777
Q ss_pred CCCcccc
Q 013914 427 GLSFASK 433 (434)
Q Consensus 427 ~~~~~~~ 433 (434)
.+++++.
T Consensus 460 hPt~~e~ 466 (479)
T 2hqm_A 460 HPTSAEE 466 (479)
T ss_dssp SSCSGGG
T ss_pred CCChHHH
Confidence 7777654
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=398.47 Aligned_cols=395 Identities=19% Similarity=0.221 Sum_probs=273.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC------CC------CCccCccccCCCCCC-----CCCCcc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP------YE------RPALSKAYLFPEGTA-----RLPGFH 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~------~~------~~~~~~~~~~~~~~~-----~~~~~~ 67 (434)
.||+||||+|+||++||.+++++|.+ |+|||+..... +. .|.++|.++...... ....+.
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~k---ValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGAR---VLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCC---EEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 38999999999999999999999988 99999765311 11 122344433221100 000010
Q ss_pred cccCC---C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEc--c----CCcEEEcceEEEecCC
Q 013914 68 VCVGS---G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS--A----TGLIFKYQILVIATGS 124 (434)
Q Consensus 68 ~~~~~---~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~----~~~~~~~d~lvlAtG~ 124 (434)
..... + ........+++.+++++.+.. .-++ .+++.. . ++++++++++|||||+
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a-~f~~--~~~v~V~~~~~~~~~~~i~a~~iiIATGs 195 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLA-KLKD--KNTVSYYLKGDLSKEETVTGKYILIATGC 195 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEE-EEEE--TTEEEEEEC--CCCEEEEEEEEEEECCCE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeE-EEcC--CCcceEeecccCCceEEEeeeeEEeccCC
Confidence 00000 0 000122335567999998743 3333 444432 2 3357999999999999
Q ss_pred CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCC
Q 013914 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 125 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~ 204 (434)
+|..|+. +++ +...++ +.+++..+. ..|++++|||+|++|+|+|..|+++|.+||++.+ +++++. +|
T Consensus 196 ~P~~P~~--~~~-~~~~~~---ts~~~l~l~-----~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~-~D 262 (542)
T 4b1b_A 196 RPHIPDD--VEG-AKELSI---TSDDIFSLK-----KDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRG-FD 262 (542)
T ss_dssp EECCCSS--SBT-HHHHCB---CHHHHTTCS-----SCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTT-SC
T ss_pred CCCCCCc--ccC-CCcccc---Cchhhhccc-----cCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccc-cc
Confidence 9998864 222 212233 333333221 1589999999999999999999999999999987 466775 79
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc---cccc-cCCc-E
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---QVAE-NKGG-I 279 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~---~~~~-~~g~-i 279 (434)
+++.+.+.+.|++.||++++++.+.++...+ ....+.+.+++++++|.|++|+|++||++.+.. ++.. ..++ |
T Consensus 263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i 340 (542)
T 4b1b_A 263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKMD--DKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKI 340 (542)
T ss_dssp HHHHHHHHHHHHHTTCEEEETCCEEEEEEET--TEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEE
T ss_pred hhHHHHHHHHHHhhcceeecceEEEEEEecC--CeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceE
Confidence 9999999999999999999999999998733 335688889989999999999999999997743 4555 3344 6
Q ss_pred EeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEe
Q 013914 280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY 359 (434)
Q Consensus 280 ~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 359 (434)
.+|+++||++|+|||+|||++... .+...|..+|+.++.|+++... ....|..+|++.++.|+++.+
T Consensus 341 ~vd~~~~Ts~p~IyAiGDv~~~~p---------~La~~A~~eg~~aa~~i~g~~~--~~~d~~~iP~~vft~PeiA~V-- 407 (542)
T 4b1b_A 341 IADHLSCTNIPSIFAVGDVAENVP---------ELAPVAIKAGEILARRLFKDSD--EIMDYSYIPTSIYTPIEYGAC-- 407 (542)
T ss_dssp CCCTTSBCSSTTEEECTTSBTTCC---------CCHHHHHHHHHHHHHHHHSCCC--CCCCCSSCCEEECSSSCEEEE--
T ss_pred eccccccccCCCeEEeccccCCch---------hHHHHHHHHHHHHHHHHhcCCC--cccCCCCCceEEeCCCCeEEE--
Confidence 889999999999999999996532 3566788999999999998643 236788899998888877666
Q ss_pred ecCCCC----------EEEEcCC-C--------------------cccCCCcEEEEEE---eCCEEEEEEEecCCHHHH-
Q 013914 360 GDNVGD----------TVLFGDN-D--------------------LASATHKFGTYWI---KDGKVVGVFLESGTPEEN- 404 (434)
Q Consensus 360 g~~~~~----------~~~~~~~-~--------------------~~~~~~~~~~~~~---~~~~ilG~~~~g~~~~~~- 404 (434)
|+++.+ .+..... . ....+.+|+|+++ ++++|||+|++|++++|+
T Consensus 408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI 487 (542)
T 4b1b_A 408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT 487 (542)
T ss_dssp ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 665311 1110000 0 0013457888775 479999999999999996
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 405 KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 405 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
+.++.||++++|++||..+--+.+++++.
T Consensus 488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE~ 516 (542)
T 4b1b_A 488 QGMALALRLKVKKKDFDNCIGIHPTDAES 516 (542)
T ss_dssp HHHHHHHHTCCBHHHHHHC----------
T ss_pred HHHHHHHHcCCCHHHHhccCCcCCCHHHH
Confidence 99999999999999888777777766654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=380.60 Aligned_cols=398 Identities=20% Similarity=0.214 Sum_probs=286.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCCC-----------CCCCCC--Cc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPE-----------GTARLP--GF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~-----------~~~~~~--~~ 66 (434)
.++||+|||||+||+++|..|++.|.+ |+|||+++..+.. .+..++.++... ..+.++ ..
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQLGFK---TVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 358999999999999999999999886 9999998642110 011111111100 000000 00
Q ss_pred ccccCC----------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC-C-cEEEcceEEEecCCCcccccCCCC
Q 013914 67 HVCVGS----------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-G-LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 67 ~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~-~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
...... ........++++.+++++.++ +..++.....+.+.+ + .++.||+||+|||++|+.|+ +
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~---i 157 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGY-GKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFP---G 157 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESE-EEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCT---T
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCC---C
Confidence 000000 000011345567799999984 445665444566555 4 57999999999999998887 4
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+..++++ ..++..+ .. .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.
T Consensus 158 ~g~~~~~v~t---~~~~~~~----~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~ 229 (474)
T 1zmd_A 158 ITIDEDTIVS---STGALSL----KK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRI 229 (474)
T ss_dssp CCCCSSSEEC---HHHHTTC----SS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHH
T ss_pred CCCCcCcEEc---HHHHhhc----cc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHH
Confidence 5554445553 3333322 11 47899999999999999999999999999999999999844899999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEE-----eCCCcEEECCEEEEcccCccChhh--h-hccccc-cCCcEEeCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVK-----LKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFF 285 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~-----~~~g~~~~~D~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~ 285 (434)
+++.||+++++++|++++.++++.+ .+. ..+++++++|.|++|+|++|++++ + ..++.. .+|+|.||+++
T Consensus 230 l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 308 (474)
T 1zmd_A 230 LQKQGFKFKLNTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF 308 (474)
T ss_dssp HHHTTCEEECSEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC
T ss_pred HHHCCCEEEeCceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC
Confidence 9999999999999999987433323 344 346678999999999999999986 3 336666 46889999999
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC--
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-- 363 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-- 363 (434)
||+.|+|||+|||+..+ ..+..|..||+.||.||++.. ....|..+|+++++.+ .+..+|.++
T Consensus 309 ~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~~~--~~a~vG~~e~~ 373 (474)
T 1zmd_A 309 QTKIPNIYAIGDVVAGP----------MLAHKAEDEGIICVEGMAGGA---VHIDYNCVPSVIYTHP--EVAWVGKSEEQ 373 (474)
T ss_dssp BCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTCC---CCCCGGGCCEEECSSS--EEEEEECCHHH
T ss_pred ccCCCCEEEeeecCCCC----------ccHHHHHHHHHHHHHHhcCCC---CcCCCCCCCEEEECCC--CeEEEeCCHHH
Confidence 99999999999999754 457789999999999999753 1245677887765444 556668764
Q ss_pred ----CCEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 364 ----GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 364 ----~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
|..+..... .+. ....+|+|++++ +++|||+|++|+++.++ +.++.||++++|++|+..+..+.+
T Consensus 374 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P 453 (474)
T 1zmd_A 374 LKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHP 453 (474)
T ss_dssp HHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTT
T ss_pred HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCC
Confidence 222222111 111 235679998885 79999999999998885 999999999999998887766666
Q ss_pred Cccc
Q 013914 429 SFAS 432 (434)
Q Consensus 429 ~~~~ 432 (434)
+|.+
T Consensus 454 t~~e 457 (474)
T 1zmd_A 454 TLSE 457 (474)
T ss_dssp CTHH
T ss_pred CHHH
Confidence 6654
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-49 Score=383.73 Aligned_cols=398 Identities=16% Similarity=0.162 Sum_probs=288.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCccCccccCCCC----------CCCCCCccc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEG----------TARLPGFHV 68 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~ 68 (434)
++++||+|||||+||+++|..|++.|.+ |+|||+++..+. ..|..++.++.... ......+..
T Consensus 2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~---V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~ 78 (466)
T 3l8k_A 2 SLKYDVVVIGAGGAGYHGAFRLAKAKYN---VLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFST 78 (466)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHH
T ss_pred CccceEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHH
Confidence 3469999999999999999999999987 999997754321 01111111110000 000000000
Q ss_pred ccCC--C---CC--CCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcE--EEcceEEEecCCCcccccCCCCCCCCC
Q 013914 69 CVGS--G---GE--RLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLI--FKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 69 ~~~~--~---~~--~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~--~~~d~lvlAtG~~~~~~~~~~~~g~~~ 139 (434)
.... . .. .....++++.+++++.+ .+..++.....+...++++ +.||+||+|||+.|+.|+ ++|.+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~---i~G~~- 153 (466)
T 3l8k_A 79 VQDRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLR---LPGVE- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCC---CTTGG-
T ss_pred HHHHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCC---CCCcc-
Confidence 0000 0 00 11122344568999997 7888887766777777877 999999999999998887 46544
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
++ .+..++..+++.+.. .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++..+++++.+.+.+.++
T Consensus 154 -~~---~t~~~~~~~~~~l~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~--- 225 (466)
T 3l8k_A 154 -YC---LTSDDIFGYKTSFRK-LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK--- 225 (466)
T ss_dssp -GS---BCHHHHHSTTCSCCS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---
T ss_pred -ce---EeHHHHHHHHHHHhh-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---
Confidence 23 344554422212222 4789999999999999999999999999999999999987449999999988876
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEcccCccChhh--hhccccc-cCCcEEeCCCCCCCCCcE
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISL--FKGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~--~g~--~~~~D~vi~a~G~~p~~~~--~~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
|+++++++|+++..++++. ..+.+. +|+ ++++|.|++|+|++|++++ ...++.. ++| |.||+++||++|+|
T Consensus 226 v~i~~~~~v~~i~~~~~~~-v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~~t~~~~I 303 (466)
T 3l8k_A 226 LNIKFNSPVTEVKKIKDDE-YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETMKTNIPNV 303 (466)
T ss_dssp CCEECSCCEEEEEEEETTE-EEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTCBCSSTTE
T ss_pred EEEEECCEEEEEEEcCCCc-EEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCccCCCCCE
Confidence 9999999999998743133 347776 676 7999999999999999983 3456776 567 99999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc--CCCCcccCCCCCCeeEEeccCceeEEeecCC------C
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT--EGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 364 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 364 (434)
||+|||++.+ +.+..|..||+.||.||++. ... ...+..+|+..++.++ +..+|.++ |
T Consensus 304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~--~~~~~~~p~~~~~~~~--~a~vG~te~~a~~~g 369 (466)
T 3l8k_A 304 FATGDANGLA----------PYYHAAVRMSIAAANNIMANGMPVD--YVDVKSIPVTIYTIPS--LSYVGILPSKARKMG 369 (466)
T ss_dssp EECGGGTCSC----------CSHHHHHHHHHHHHHHHHTTTSCCC--CCCSTTSCEEECSSSC--EEEEECCHHHHHHHT
T ss_pred EEEEecCCCC----------ccHhHHHHHHHHHHHHHhCCCCCcc--ccCCCCCcEEEECCCC--eEEecCCHHHHHhCC
Confidence 9999999863 56788999999999999975 321 2466677876655444 45557664 2
Q ss_pred CEEEEcC-----CCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+.... ..+. ....+|+|+++ ++|+|||+|++|+++.++ +.++.||++++|++|+..+.-+.++|.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 448 (466)
T 3l8k_A 370 IEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNE 448 (466)
T ss_dssp CCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTH
T ss_pred CCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHH
Confidence 2222211 1111 24678999888 469999999999999885 9999999999999998888777777765
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=391.39 Aligned_cols=396 Identities=19% Similarity=0.252 Sum_probs=283.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEe---------CCCCCC---CCCCccCccccCCCCC----CCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIIS---------KEAVAP---YERPALSKAYLFPEGT----ARLPG 65 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie---------~~~~~~---~~~~~~~~~~~~~~~~----~~~~~ 65 (434)
++++||+|||||+||+++|..|++ .|.+ |+||| ++...+ +..|..++.++..... ...+.
T Consensus 5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~ 81 (495)
T 2wpf_A 5 SKAFDLVVIGAGSGGLEAGWNAATLYGKR---VAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAG 81 (495)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCEEEECCChhHHHHHHHHHHhcCCe---EEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHh
Confidence 346899999999999999999999 8987 99999 322100 0001111111100000 00000
Q ss_pred cccccCCC----CC---------------CCChhhHhhc-CcEEEcCCeeEEEECCCCEEEcc---C-----CcEEEcce
Q 013914 66 FHVCVGSG----GE---------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSA---T-----GLIFKYQI 117 (434)
Q Consensus 66 ~~~~~~~~----~~---------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~---~-----~~~~~~d~ 117 (434)
+.+..... .. ......+++. +++++.+ .+..++ .++|.+. + ++++.||+
T Consensus 82 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d~ 158 (495)
T 2wpf_A 82 FGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLG-WGSLES--KNVVVVRETADPKSAVKERLQADH 158 (495)
T ss_dssp TTEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEES-EEEEEE--TTEEEEESSSSTTSCEEEEEEEEE
T ss_pred cCcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-EEEEee--CCEEEEeecCCccCCCCeEEEcCE
Confidence 00000000 00 0012234556 9999998 566665 4667665 4 56799999
Q ss_pred EEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEcc
Q 013914 118 LVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYP 194 (434)
Q Consensus 118 lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~ 194 (434)
||||||++|+.|+ ++|.+ .+++ ..++..+ . ..+++++|||+|++|+|+|..|.+. |.+|+++++
T Consensus 159 lViATGs~p~~p~---i~G~~--~~~~---~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~ 225 (495)
T 2wpf_A 159 ILLATGSWPQMPA---IPGIE--HCIS---SNEAFYL----P-EPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYR 225 (495)
T ss_dssp EEECCCEEECCCC---CTTGG--GCEE---HHHHTTC----S-SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred EEEeCCCCcCCCC---CCCcc--cccc---HHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEc
Confidence 9999999998877 56542 2343 3333222 1 1478999999999999999999999 999999999
Q ss_pred CCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hcc
Q 013914 195 EPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQ 271 (434)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~ 271 (434)
.+++++. +++++.+.+.+.+++.||+++++++|.++..++++ ...+++.+|+++++|.||+|+|++|+++.+ ..+
T Consensus 226 ~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~g 303 (495)
T 2wpf_A 226 NNLILRG-FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDG-SKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVG 303 (495)
T ss_dssp SSSSCTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS-CEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTT
T ss_pred CCccccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCc-eEEEEECCCcEEEcCEEEECCCCcccccccchhhcC
Confidence 9999886 89999999999999999999999999999874333 357888899899999999999999999743 345
Q ss_pred ccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEe
Q 013914 272 VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSR 350 (434)
Q Consensus 272 ~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~ 350 (434)
+.. ++|+|.||+++||++|+|||+|||++.+ .++..|..||+.||.||++... ....|..+|+..++
T Consensus 304 l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~ 371 (495)
T 2wpf_A 304 VKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL----------MLTPVAINEGAALVDTVFGNKP--RKTDHTRVASAVFS 371 (495)
T ss_dssp CCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCC--CCCCCSSCEEEECC
T ss_pred ccCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCC--CcCCCCCCCEEEEC
Confidence 666 4788999999999999999999999643 5678899999999999997532 12566677766555
Q ss_pred ccCceeEEeecCCC------CEEEEcC--CCc------ccCCCcE-EEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHH
Q 013914 351 AFDLSWQFYGDNVG------DTVLFGD--NDL------ASATHKF-GTYWIK--DGKVVGVFLESGTPEEN-KAIAKVAR 412 (434)
Q Consensus 351 ~~~~~~~~~g~~~~------~~~~~~~--~~~------~~~~~~~-~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~ 412 (434)
.+ .+..+|+++. ..+.... ... ...+..| +|++++ +++|||+|++|+++.++ +.++.||+
T Consensus 372 ~~--~~a~vGl~e~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~ 449 (495)
T 2wpf_A 372 IP--PIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLR 449 (495)
T ss_dssp SS--CEEEEECCHHHHHHHSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHH
T ss_pred CC--CeEEEeCCHHHHHhcCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 44 4555676542 1122111 110 0235679 998884 79999999999998885 99999999
Q ss_pred cCCCCCChhhhhccCCCcccc
Q 013914 413 VQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 413 ~~~~~~~~~~l~~~~~~~~~~ 433 (434)
+++|++|+..+.-+.+++.+.
T Consensus 450 ~~~t~~~l~~~~~~hPt~~e~ 470 (495)
T 2wpf_A 450 LNAKISDFYNTIGVHPTSAEE 470 (495)
T ss_dssp TTCBHHHHHHSCCCSSCSGGG
T ss_pred CCCCHHHHhhcccCCCChHHH
Confidence 999999888877777776653
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-49 Score=388.46 Aligned_cols=398 Identities=24% Similarity=0.282 Sum_probs=280.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CCCccCccccCCCCC-----CCCCCcccccCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ERPALSKAYLFPEGT-----ARLPGFHVCVGSG 73 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (434)
|+++||+|||||+||++||..|+++|.+ |+|||+++..+. ..|..++.++..... ..+..+.......
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 99 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLGMK---VAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP 99 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC
Confidence 3469999999999999999999999987 999998754321 001111111110000 0000000000000
Q ss_pred -----------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCC
Q 013914 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
.......++++.+++++.+ ....++.....+...++ .++.||+||||||+.|. +++++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~--~ipg~ 176 (491)
T 3urh_A 100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGV 176 (491)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC--CBTTB
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC--CCCCc
Confidence 0001223455678999998 44444444445555566 57999999999999864 32222
Q ss_pred CC-CCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 135 EG-ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 135 ~g-~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
+. .+...++ +..+...+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+
T Consensus 177 ~~~~~~~~~~---~~~~~~~~-----~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~ 247 (491)
T 3urh_A 177 EVAFDEKTIV---SSTGALAL-----EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQR 247 (491)
T ss_dssp CCCCCSSSEE---CHHHHTSC-----SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHH
T ss_pred ccccCCeeEE---ehhHhhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHH
Confidence 21 1223343 33333221 125799999999999999999999999999999999999986 79999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCC
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDF 284 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~ 284 (434)
.+++.||++++++++.+++.++++ ..+.+.+ | +++++|.|++|+|++|+++++ ..++.. ++|+|.||++
T Consensus 248 ~l~~~gV~v~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 325 (491)
T 3urh_A 248 MLTKQGIDFKLGAKVTGAVKSGDG--AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH 325 (491)
T ss_dssp HHHHTTCEEECSEEEEEEEEETTE--EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT
T ss_pred HHHhCCCEEEECCeEEEEEEeCCE--EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC
Confidence 999999999999999999873333 3455542 5 579999999999999999863 346666 5788999999
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV- 363 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~- 363 (434)
+||++|+|||+|||++.+ ..+..|..||+.||.+|++... ...+..+|+..+. +..+..+|+++
T Consensus 326 ~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~--~p~~a~vGlte~ 390 (491)
T 3urh_A 326 FQTSIAGVYAIGDVVRGP----------MLAHKAEDEGVAVAEIIAGQAG---HVNYDVIPGVVYT--QPEVASVGKTEE 390 (491)
T ss_dssp CBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTTSCC---CCCTTCCCEEECS--SSCEEEEECCHH
T ss_pred CCCCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHHcCCCc---ccCCCCCCEEEEc--cCCeEEEeCCHH
Confidence 999999999999999654 5678899999999999998542 2566778876654 44555668764
Q ss_pred -----CCEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccC
Q 013914 364 -----GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEG 427 (434)
Q Consensus 364 -----~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~ 427 (434)
|..+..+..+ +. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-+.
T Consensus 391 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 470 (491)
T 3urh_A 391 ELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAH 470 (491)
T ss_dssp HHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCS
T ss_pred HHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCC
Confidence 3323222211 11 24568999887 479999999999999885 99999999999999888777666
Q ss_pred CCccc
Q 013914 428 LSFAS 432 (434)
Q Consensus 428 ~~~~~ 432 (434)
+++.+
T Consensus 471 Pt~~e 475 (491)
T 3urh_A 471 PTMSE 475 (491)
T ss_dssp SCTTH
T ss_pred CChHH
Confidence 66654
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-49 Score=385.66 Aligned_cols=402 Identities=18% Similarity=0.198 Sum_probs=286.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCccCccccCCC----CCCCCCCcccccCCC--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFPE----GTARLPGFHVCVGSG-- 73 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-- 73 (434)
+.++||+|||||+||+++|..|++.|.+ |+|||++...+. ..|..++.++... .......+.......
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~---V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGAR---AAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF 94 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 3469999999999999999999999987 999998753210 0011111111000 000000000000000
Q ss_pred ---------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 ---------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 ---------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
........++..+++++.+ .+..++.....+. .+++++.||+||+|||+.|+.|....++|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 0001122345578999987 4555555555666 4667899999999999999888211256643
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
. ..+..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 173 --~---~~~~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~ 241 (478)
T 3dk9_A 173 --L---GITSDGFFQLE-----ELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENA 241 (478)
T ss_dssp --G---SBCHHHHTTCC-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHT
T ss_pred --e---eEchHHhhchh-----hcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccc-cCHHHHHHHHHHHHHC
Confidence 1 12333332221 14789999999999999999999999999999999999875 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCC---C----cEEECCEEEEcccCccChhh--h-hccccc-cCCcEEeCCCCCC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKD---G----RTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKT 287 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g----~~~~~D~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t 287 (434)
||++++++.+++++..+++....+.+.+ | +++++|.|++|+|++|+++. + ..++.. ++|+|.||+++||
T Consensus 242 gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t 321 (478)
T 3dk9_A 242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNT 321 (478)
T ss_dssp TCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBC
T ss_pred CCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCccc
Confidence 9999999999999875555334566665 2 57999999999999999983 2 346666 6789999999999
Q ss_pred CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC---
Q 013914 288 SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG--- 364 (434)
Q Consensus 288 ~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~--- 364 (434)
++|+|||+|||++.+ ..+..|..||+.||.||++.... ....|..+|+..++.++++ .+|+++.
T Consensus 322 ~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~p~~a--~vGlte~~a~ 388 (478)
T 3dk9_A 322 NVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYKED-SKLDYNNIPTVVFSHPPIG--TVGLTEDEAI 388 (478)
T ss_dssp SSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCTTCCEEECCSSCEE--EEECCHHHHH
T ss_pred CCCCEEEEEecCCCC----------ccHhHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceE--EeeCCHHHHH
Confidence 999999999999654 46778899999999999986221 2356777888766655554 4576641
Q ss_pred -----CEEE-----EcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 365 -----DTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 365 -----~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
..+. +....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 468 (478)
T 3dk9_A 389 HKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHP 468 (478)
T ss_dssp HHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred hhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 1111 1111111 24578899887 579999999999999885 999999999999998887777777
Q ss_pred Ccccc
Q 013914 429 SFASK 433 (434)
Q Consensus 429 ~~~~~ 433 (434)
++++.
T Consensus 469 t~~e~ 473 (478)
T 3dk9_A 469 TSSEE 473 (478)
T ss_dssp SSGGG
T ss_pred ChHHH
Confidence 76654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=376.50 Aligned_cols=395 Identities=23% Similarity=0.279 Sum_probs=283.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCCCC----------CCCCC------
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----------TARLP------ 64 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----------~~~~~------ 64 (434)
++||+|||||+||+++|..|++.|.+ |+|||+++..+.. .+..++.++.... ...++
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMK---TACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 58999999999999999999999987 9999998543210 0111111111000 00000
Q ss_pred -CcccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCCC
Q 013914 65 -GFHVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 65 -~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
.+...... .......+++++.+++++.++. ..++.....+.+.+| .++.||+||+|||+.|+.|+ ++
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~-~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~---~~ 154 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG-SFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELP---FL 154 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE-EEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBT---TB
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCC---CC
Confidence 00000000 0000113445667999999854 446655445655666 67999999999999998887 45
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
|.+..+++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 155 g~~~~~v~---t~~~~~~~~-----~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l 225 (468)
T 2qae_A 155 PFDEKVVL---SSTGALALP-----RVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGAL 225 (468)
T ss_dssp CCCSSSEE---CHHHHHTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHH
T ss_pred CCCcCcee---chHHHhhcc-----cCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccccc-CCHHHHHHHHHHH
Confidence 55444555 344443321 14789999999999999999999999999999999999986 8999999999999
Q ss_pred -HhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCCCCC
Q 013914 216 -ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFK 286 (434)
Q Consensus 216 -~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~ 286 (434)
++.||+++++++|.+++.++++ ..+.+. +| +++++|.|++|+|++|++++ ++ .++.. ++|+|.||+++|
T Consensus 226 ~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~ 303 (468)
T 2qae_A 226 AKNEKMKFMTSTKVVGGTNNGDS--VSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFE 303 (468)
T ss_dssp HHHTCCEEECSCEEEEEEECSSS--EEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSB
T ss_pred hhcCCcEEEeCCEEEEEEEcCCe--EEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcc
Confidence 9999999999999999874333 345554 66 67999999999999999986 33 36666 468899999999
Q ss_pred CCCCcEEEeccccc-ccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC--
Q 013914 287 TSADDVYAVGDVAT-FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-- 363 (434)
Q Consensus 287 t~~~~iya~GD~~~-~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-- 363 (434)
|++|+|||+|||+. .+ ..+..|..||+.||.||++.. ....|..+|++.+ .+..+..+|.++
T Consensus 304 t~~~~IyA~GD~~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~--~~~~~a~vG~~e~~ 368 (468)
T 2qae_A 304 TSIPDVYAIGDVVDKGP----------MLAHKAEDEGVACAEILAGKP---GHVNYGVIPAVIY--TMPEVASVGKSEDE 368 (468)
T ss_dssp CSSTTEEECGGGBSSSC----------SCHHHHHHHHHHHHHHHTTCC---CCCCTTSCCEEEC--SSSEEEEEECCHHH
T ss_pred cCCCCEEEeeccCCCCC----------ccHhHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEE--CCCceEEEeCCHHH
Confidence 99999999999998 33 467789999999999999743 1244566776544 445566668764
Q ss_pred ----CCEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 364 ----GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 364 ----~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
+..+..... .+. ....+|+|++++ +++|||+|++|+.+.++ +.++.||++++|++|+..+..+.+
T Consensus 369 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~P 448 (468)
T 2qae_A 369 LKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHP 448 (468)
T ss_dssp HHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred HHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 222222211 111 235679998884 79999999999998885 999999999999998887666666
Q ss_pred Cccc
Q 013914 429 SFAS 432 (434)
Q Consensus 429 ~~~~ 432 (434)
+|.+
T Consensus 449 t~~e 452 (468)
T 2qae_A 449 TMSE 452 (468)
T ss_dssp CTHH
T ss_pred CHHH
Confidence 6543
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=381.81 Aligned_cols=395 Identities=19% Similarity=0.226 Sum_probs=282.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCC---------CCCCCCC----
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFP---------EGTARLP---- 64 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~---------~~~~~~~---- 64 (434)
|+.++||+|||||+||+++|..|++.|.+ |+|||+++..+-. .+..++.++.. .....++
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~ 79 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEP 79 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 44578999999999999999999999887 9999996542200 01111111100 0000000
Q ss_pred --CcccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEc--cCC------------cEEEcceEEEec
Q 013914 65 --GFHVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLS--ATG------------LIFKYQILVIAT 122 (434)
Q Consensus 65 --~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~--~~~------------~~~~~d~lvlAt 122 (434)
.+...... ........++++.+++++.++.+. ++. +.+.+ .++ .+++||++|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~--~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAt 156 (482)
T 1ojt_A 80 ELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQF-LDP--HHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAA 156 (482)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEE-EET--TEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEE-ccC--CEEEEEecCCcccccccccCcceEEEcCEEEECC
Confidence 00000000 000001234566799999986544 443 44433 344 579999999999
Q ss_pred CCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc
Q 013914 123 GSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL 202 (434)
Q Consensus 123 G~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~ 202 (434)
|+.|+.|+. ++ .+ ..++ +..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.
T Consensus 157 Gs~p~~~~~--i~-~~-~~v~---~~~~~~~~~----~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~- 223 (482)
T 1ojt_A 157 GSRVTKLPF--IP-ED-PRII---DSSGALALK----E-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG- 223 (482)
T ss_dssp CEEECCCSS--CC-CC-TTEE---CHHHHTTCC----C-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-
T ss_pred CCCCCCCCC--CC-cc-CcEE---cHHHHhccc----c-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-
Confidence 999987763 33 22 2444 444443321 1 4789999999999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC----CcEEECCEEEEcccCccChhhh--h-ccccc-
Q 013914 203 FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD----GRTLEADIVVVGVGGRPLISLF--K-GQVAE- 274 (434)
Q Consensus 203 ~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~----g~~~~~D~vi~a~G~~p~~~~~--~-~~~~~- 274 (434)
+++++.+.+.+.+++.||+++++++|.+++.+++ ...+++.+ |+++++|.|++|+|++||++++ + .++..
T Consensus 224 ~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~ 301 (482)
T 1ojt_A 224 ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKED--GVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVT 301 (482)
T ss_dssp SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETT--EEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCC
T ss_pred cCHHHHHHHHHHHHhcCCEEEECCEEEEEEEcCC--eEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeC
Confidence 8999999999999999999999999999987332 24667766 7789999999999999999874 3 35666
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDL 354 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~ 354 (434)
.+|+|.||+++||++|+|||+|||++.+ ..+..|..||+.||.||++.. ....+..+|++.++.+
T Consensus 302 ~~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~~-- 366 (482)
T 1ojt_A 302 DRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK---AYFDARVIPGVAYTSP-- 366 (482)
T ss_dssp TTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCCCCCEEECSSS--
T ss_pred CCCCEeeCCCcccCCCCEEEEEcccCCC----------ccHHHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEEcCC--
Confidence 4588999999999999999999999854 467789999999999999743 1245666776655544
Q ss_pred eeEEeecCC------CCEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCC
Q 013914 355 SWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSV 417 (434)
Q Consensus 355 ~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~ 417 (434)
.+..+|.++ +..+..+..+ +. ....+|+|+++ ++++|||+|++|+.+.++ +.++.||++++|+
T Consensus 367 ~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~ 446 (482)
T 1ojt_A 367 EVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDA 446 (482)
T ss_dssp CEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBH
T ss_pred CeEEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCH
Confidence 455667764 3222222211 11 23567999888 589999999999998885 9999999999999
Q ss_pred CChhhhhccCCCccc
Q 013914 418 ESLDVLKNEGLSFAS 432 (434)
Q Consensus 418 ~~~~~l~~~~~~~~~ 432 (434)
+|+..+.-+.+++.+
T Consensus 447 ~~l~~~~~~~Pt~~e 461 (482)
T 1ojt_A 447 ADIGKTIHPHPTLGE 461 (482)
T ss_dssp HHHHTSCCCSSSSTT
T ss_pred HHHhcCccCCCCHHH
Confidence 988877777766654
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-49 Score=386.29 Aligned_cols=396 Identities=22% Similarity=0.250 Sum_probs=285.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC----CCC------CccCccccCCCC-----CCCCCCccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP----YER------PALSKAYLFPEG-----TARLPGFHV 68 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~----~~~------~~~~~~~~~~~~-----~~~~~~~~~ 68 (434)
++|||+|||||+||+++|..|++.|++ |+|||+++..+ +.. |..++.++.... ...+..+..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~ 78 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGLK---TALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGI 78 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCC---EEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 469999999999999999999999987 99999986211 000 000111000000 000000000
Q ss_pred ccCCC-----------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccc
Q 013914 69 CVGSG-----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 69 ~~~~~-----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
..... .......++++.+++++.+ .+..++.....+...++ .++.||++|+|||++|..|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 79 STGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp ECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 00000 0001123345678999998 44445555556666666 5799999999999999876
Q ss_pred cCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHH
Q 013914 130 TDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAA 209 (434)
Q Consensus 130 ~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~ 209 (434)
+. .+.+...+++..+..+ + ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+
T Consensus 158 ~~---~~~~~~~v~~~~~~~~---~-----~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~ 225 (476)
T 3lad_A 158 PP---APVDQDVIVDSTGALD---F-----QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAK 225 (476)
T ss_dssp TT---SCCCSSSEEEHHHHTS---C-----SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHH
T ss_pred CC---CCCCcccEEechhhhc---c-----ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-cCHHHHH
Confidence 63 3344456665432221 1 125789999999999999999999999999999999999985 7999999
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeC
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD 282 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd 282 (434)
.+.+.+++.||+++++++|++++.++++ ..+.+.++ +++++|.|++|+|++|+++.+ ..++.. ++|+|.||
T Consensus 226 ~l~~~l~~~Gv~v~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd 303 (476)
T 3lad_A 226 EAQKILTKQGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVD 303 (476)
T ss_dssp HHHHHHHHTTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCC
T ss_pred HHHHHHHhCCCEEEECCEEEEEEEcCCE--EEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeC
Confidence 9999999999999999999999874333 34666544 679999999999999999853 345666 57889999
Q ss_pred CCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecC
Q 013914 283 DFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDN 362 (434)
Q Consensus 283 ~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~ 362 (434)
+++||++|+|||+|||++.+ ..+..|..||+.||+||++... ...+..+|++.++ +..+..+|++
T Consensus 304 ~~~~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~---~~~~~~~p~~~~~--~~~~a~vGlt 368 (476)
T 3lad_A 304 DYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHKA---QMNYDLIPAVIYT--HPEIAGVGKT 368 (476)
T ss_dssp TTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCCC---CCCTTCCCEEECS--SSEEEEEECC
T ss_pred CCcccCCCCEEEEEccCCCc----------ccHHHHHHHHHHHHHHhcCCCc---ccCCCCCCEEEEC--cCCEEEeeCC
Confidence 99999999999999999654 4677899999999999997542 2566778876654 4555666876
Q ss_pred C------CCEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhc
Q 013914 363 V------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKN 425 (434)
Q Consensus 363 ~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~ 425 (434)
+ |..+..+..+ +. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-
T Consensus 369 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~ 448 (476)
T 3lad_A 369 EQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVF 448 (476)
T ss_dssp HHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCC
T ss_pred HHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCcc
Confidence 5 3223222211 11 24568999887 479999999999999885 999999999999998887766
Q ss_pred cCCCccc
Q 013914 426 EGLSFAS 432 (434)
Q Consensus 426 ~~~~~~~ 432 (434)
+.+++++
T Consensus 449 ~hPt~~e 455 (476)
T 3lad_A 449 AHPALSE 455 (476)
T ss_dssp CSSCSHH
T ss_pred CCCChHH
Confidence 6666554
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-48 Score=376.97 Aligned_cols=397 Identities=20% Similarity=0.247 Sum_probs=288.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC----CCCCCCcccccCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGSG 73 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 73 (434)
|++.++||+|||||++|+++|..|+++|.+ |+|||++...+ +..|..++.++.... ....+.+.......
T Consensus 1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~ 77 (463)
T 4dna_A 1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKK---VAIAEEFRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGES 77 (463)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCC
T ss_pred CCCCCCcEEEECcCHHHHHHHHHHHhCCCE---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 555579999999999999999999999987 99999954211 000111111100000 00000010000000
Q ss_pred -----------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEc-cCCcEEEcceEEEecCCCcc-cccCCCC
Q 013914 74 -----------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLS-ATGLIFKYQILVIATGSTVL-RLTDFGV 134 (434)
Q Consensus 74 -----------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~-~~~~~~~~d~lvlAtG~~~~-~~~~~~~ 134 (434)
.......+++..+++++.+ .+..+ +.+++.+ .+++.+.||++|+|||+.|. .|+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~---i 151 (463)
T 4dna_A 78 RFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELA--GPNTVKLLASGKTVTAERIVIAVGGHPSPHDA---L 151 (463)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEES--SSSEEEETTTTEEEEEEEEEECCCEEECCCTT---S
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEe--eCCEEEEecCCeEEEeCEEEEecCCCcccCCC---C
Confidence 0011223345568999987 55544 3567776 56778999999999999998 777 4
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+ .+ .+..+...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 152 ~G~~--~~---~~~~~~~~~~-----~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~-~~~~~~~~l~~~ 220 (463)
T 4dna_A 152 PGHE--LC---ITSNEAFDLP-----ALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDMRRGLHAA 220 (463)
T ss_dssp TTGG--GC---BCHHHHTTCS-----SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred CCcc--cc---ccHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHH
Confidence 6543 12 2333333221 14789999999999999999999999999999999998875 799999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEE-eCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSA 289 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~-~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~ 289 (434)
+++.||+++++++|++++.++++. ..+. +.+|+ +++|.|++|+|++|+++++ ..++.. ++|+|.||+++||++
T Consensus 221 l~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 298 (463)
T 4dna_A 221 MEEKGIRILCEDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTST 298 (463)
T ss_dssp HHHTTCEEECSCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSS
T ss_pred HHHCCCEEECCCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCC
Confidence 999999999999999998744443 4677 88897 9999999999999999863 346666 678999999999999
Q ss_pred CcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------
Q 013914 290 DDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------ 363 (434)
Q Consensus 290 ~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------ 363 (434)
|+|||+|||++.+ +.+..|..||+.+|+||++.... ...+..+|+..++.+++ ..+|+++
T Consensus 299 ~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~--a~vG~te~~a~~~ 364 (463)
T 4dna_A 299 PGIYALGDVTDRV----------QLTPVAIHEAMCFIETEYKNNPT--SPDHDLIATAVFSQPEI--GTVGITEEEAARK 364 (463)
T ss_dssp TTEEECSGGGSSC----------CCHHHHHHHHHHHHHHHHSSCCC--CCCCSCCCEEECSSSCE--EEEECCHHHHHHH
T ss_pred CCEEEEEecCCCC----------CChHHHHHHHHHHHHHHcCCCCc--ccCCCCCCEEEECCCCe--EEecCCHHHHHHc
Confidence 9999999999843 56788999999999999976432 24677788877665554 4557664
Q ss_pred CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 364 GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 364 ~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+..+.. ....+. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++||..+.-+.+++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (463)
T 4dna_A 365 FQEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAE 444 (463)
T ss_dssp SSEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGG
T ss_pred CCCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence 322222 111111 24678899887 479999999999999885 9999999999999988877777777665
Q ss_pred c
Q 013914 433 K 433 (434)
Q Consensus 433 ~ 433 (434)
.
T Consensus 445 ~ 445 (463)
T 4dna_A 445 E 445 (463)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=371.47 Aligned_cols=396 Identities=19% Similarity=0.197 Sum_probs=285.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCccCccccCCCC----CC-CCCCcccccCC--
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFPEG----TA-RLPGFHVCVGS-- 72 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~~~----~~-~~~~~~~~~~~-- 72 (434)
++++||+|||||+||+++|..|++.|.+ |+|||++...+. ..|.+++.++.... .. ..+.+......
T Consensus 2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 2 TKHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred CccCCEEEECCCHHHHHHHHHHHhCCCe---EEEEcCCCCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 4579999999999999999999998886 999999843110 00111111111000 00 00001000000
Q ss_pred -C--------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC
Q 013914 73 -G--------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA 137 (434)
Q Consensus 73 -~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~ 137 (434)
. ........+++.+++++.+ .+..++. +++.+ +++++.||+||+|||++|..|+ ++|.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~g~ 151 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPSHPD---IPGV 151 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEECCCC---STTG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCCCCC---CCCc
Confidence 0 0001122345679999998 4555653 56766 6778999999999999998877 4654
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+ .+ .+..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 152 ~--~~---~~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~ 220 (450)
T 1ges_A 152 E--YG---IDSDGFFAL----P-ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNA 220 (450)
T ss_dssp G--GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred c--ce---ecHHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhh-hhHHHHHHHHHHHHH
Confidence 2 12 244444332 1 14789999999999999999999999999999999998885 899999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--h-hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~--~-~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
.||+++++++|.+++.++++. ..+.+.+|+++++|.|++|+|++|+++. + ..++.. ++|+|.||+++||++|+||
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~Iy 299 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIY 299 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEE
T ss_pred CCCEEEeCCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEE
Confidence 999999999999998743332 4678889989999999999999999973 3 346666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------C-C
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------G-D 365 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~-~ 365 (434)
|+|||++.+ ..+..|..||+.+|.||++.... ....|..+|+..++.+++.. +|.++ | .
T Consensus 300 A~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~~~~a~--vG~~e~~a~~~~g~~ 366 (450)
T 1ges_A 300 AVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKPD-EHLDYSNIPTVVFSHPPIGT--VGLTEPQAREQYGDD 366 (450)
T ss_dssp ECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCTT-CCCCCSSCCEEECCSSCEEE--EECCHHHHHHHHCGG
T ss_pred EEeccCCCC----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCeEEECCCceEE--EeCCHHHHHhcCCCC
Confidence 999998743 56788999999999999974321 11456778887666565554 46543 2 1
Q ss_pred EEEEcC-----CCc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 366 TVLFGD-----NDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 366 ~~~~~~-----~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.+.... ... ...+..|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+..+.+++.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (450)
T 1ges_A 367 QVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEE 445 (450)
T ss_dssp GEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred cEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHH
Confidence 122111 011 123567888887 479999999999999885 99999999999999888877777776654
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-48 Score=379.76 Aligned_cols=396 Identities=19% Similarity=0.190 Sum_probs=288.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCC---CCCCccCccccCC---------CCCCCCCCcccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAP---YERPALSKAYLFP---------EGTARLPGFHVC 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~ 69 (434)
++||||||||+||+++|.+|++. |.+ |+|||+++..+ ...+..++.++.. ...+.++.+...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~---V~liE~~~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQ---VTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDD 78 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEE---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC-----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCE---EEEEeCCCcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCC
Confidence 48999999999999999999999 776 99999986211 0001111211110 000111000000
Q ss_pred cCCC--------------CCCCChhhHhhcCcEEEcCCeeEEEECC----CC--EEEccCCc--EEEcceEEEecCCCcc
Q 013914 70 VGSG--------------GERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGL--IFKYQILVIATGSTVL 127 (434)
Q Consensus 70 ~~~~--------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~--~~~~d~lvlAtG~~~~ 127 (434)
.... ......+++++.+++++.+ .+..+++. .+ .+...+++ .+.||++|+|||+.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p~ 157 (499)
T 1xdi_A 79 AKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR 157 (499)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEEC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCCC
Confidence 0000 0001234566789999998 47777662 13 34555665 7999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+..++++..+..+.. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++
T Consensus 158 ~p~---i~g~~~~~v~~~~~~~~~~--------~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~ 225 (499)
T 1xdi_A 158 ILP---SAQPDGERILTWRQLYDLD--------ALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADA 225 (499)
T ss_dssp CCG---GGCCCSSSEEEGGGGGGCS--------SCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHH
T ss_pred CCC---CCCCCcCcEEehhHhhhhh--------ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence 887 4665555677655433221 14789999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDD 283 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~ 283 (434)
.+.+.+.+++.||+++++++|++++.+++ . ..+.+.+|+++++|.||+|+|++|++++ ++ .++.. ++|+|.||+
T Consensus 226 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 303 (499)
T 1xdi_A 226 ALVLEESFAERGVRLFKNARAASVTRTGA-G-VLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR 303 (499)
T ss_dssp HHHHHHHHHHTTCEEETTCCEEEEEECSS-S-EEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEeCC-E-EEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence 99999999999999999999999987333 3 4677888889999999999999999987 43 36666 468899999
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV 363 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~ 363 (434)
++||++|+|||+|||++.+ ..+..|..||+.||.||++... ....|..+|+++++ +..+..+|.++
T Consensus 304 ~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~--~~~~a~vG~~e 369 (499)
T 1xdi_A 304 VSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGEGV--SPIRLRTVAATVFT--RPEIAAVGVPQ 369 (499)
T ss_dssp SSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTCCC--CCCCGGGCEEEECS--SSEEEEEESCH
T ss_pred CcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCCC--ccCCCCCCcEEEEe--cCCceEeCCCH
Confidence 9999999999999999854 4567899999999999997521 12456677876654 45556668764
Q ss_pred ------CCEEEEcC-----CCcc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhcc
Q 013914 364 ------GDTVLFGD-----NDLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNE 426 (434)
Q Consensus 364 ------~~~~~~~~-----~~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~ 426 (434)
|..+.... ..+. ....+|+|++++ +|+|||++++|+.+.++ +.++.||++++|++|+..+..+
T Consensus 370 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~ 449 (499)
T 1xdi_A 370 SVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAV 449 (499)
T ss_dssp HHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCC
T ss_pred HHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhccccc
Confidence 22222211 1111 235679998885 69999999999998884 9999999999999988776666
Q ss_pred CCCccc
Q 013914 427 GLSFAS 432 (434)
Q Consensus 427 ~~~~~~ 432 (434)
.++|.+
T Consensus 450 ~Pt~~e 455 (499)
T 1xdi_A 450 YPSLSG 455 (499)
T ss_dssp SSSTHH
T ss_pred CCCchH
Confidence 666654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=379.45 Aligned_cols=395 Identities=18% Similarity=0.165 Sum_probs=281.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCC----CCCCCCCc---ccccC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGF---HVCVG 71 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~---~~~~~ 71 (434)
|+.++||+|||||++|+++|.+|++.|.+ |+|||++...+ +..+..++.++... .....+.+ .....
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 77 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQ---VTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP 77 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSTTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCC
Confidence 34579999999999999999999999876 99999984211 00000011100000 00000000 00000
Q ss_pred CCCC----------------CCChhhHhhc-CcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCC
Q 013914 72 SGGE----------------RLLPEWYKEK-GIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDF 132 (434)
Q Consensus 72 ~~~~----------------~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~ 132 (434)
.... ....+++++. +++++.+ .+..++....++.+.++ .++.||+||+|||++|+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~-- 154 (467)
T 1zk7_A 78 TIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPP-- 154 (467)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCC--
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCC--
Confidence 0000 0123445556 8999987 57777766556666677 67999999999999998887
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~ 212 (434)
++|.+...++ +..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ +++++.+.+.
T Consensus 155 -i~G~~~~~~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~ 223 (467)
T 1zk7_A 155 -IPGLKESPYW---TSTEALAS----D-TIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVT 223 (467)
T ss_dssp -CTTTTTSCCB---CHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHH
T ss_pred -CCCCCcCcee---cHHHHhcc----c-ccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHH
Confidence 4665444443 33443332 1 1479999999999999999999999999999999999988 7999999999
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTS 288 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~ 288 (434)
+.+++.||+++++++|++++. ++....+.++ +.++++|.||+|+|++|+++.+ ..++.. .+|+|.||+++||+
T Consensus 224 ~~l~~~Gv~i~~~~~v~~i~~--~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 300 (467)
T 1zk7_A 224 AAFRAEGIEVLEHTQASQVAH--MDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTS 300 (467)
T ss_dssp HHHHHTTCEEETTCCEEEEEE--ETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred HHHHhCCCEEEcCCEEEEEEE--eCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccC
Confidence 999999999999999999986 3333456666 4589999999999999998753 345666 46889999999999
Q ss_pred CCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-----
Q 013914 289 ADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV----- 363 (434)
Q Consensus 289 ~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~----- 363 (434)
.|+|||+|||+..+ ..+..|..||+.+|.||++.. ....+..+|++... +..+..+|.++
T Consensus 301 ~~~iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~--~~~~a~vG~~~~~a~~ 365 (467)
T 1zk7_A 301 NPNIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGD---AALDLTAMPAVVFT--DPQVATVGYSEAEAHH 365 (467)
T ss_dssp STTEEECSTTBSSC----------CCHHHHHHHHHHHHHHHTTCC---CCCCCTTCEEEECS--SSEEEEEECCHHHHHH
T ss_pred CCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---cccCCCCCCEEEec--CCceEEEecCHHHHHh
Confidence 99999999999865 357789999999999998752 12456667765544 44555667654
Q ss_pred -CCEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 364 -GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 364 -~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
|..+..... .+. ....+|.|++++ +|+|||++++|+++.++ +.++.+|++++|++|+..+.-+.+++.
T Consensus 366 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~ 445 (467)
T 1zk7_A 366 DGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMV 445 (467)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTT
T ss_pred cCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 222222111 111 235679998884 89999999999998885 999999999999986665544444443
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=375.40 Aligned_cols=395 Identities=21% Similarity=0.238 Sum_probs=280.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCccCccccCC----------CCCCCCC-----Cc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFP----------EGTARLP-----GF 66 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~----------~~~~~~~-----~~ 66 (434)
++||+|||||+||+++|..|++.|.+ |+|||++..... ..+..++.++.. .....++ .+
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~---V~liE~~~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLS---TAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDY 79 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCH
Confidence 58999999999999999999999987 999999832100 000111111100 0000000 00
Q ss_pred ccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 67 HVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 67 ~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
...... .......+.+++.+++++.++.+. ++.....+.+.++ .++.||++|+|||+.|+.|+. ++.+
T Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~-id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~---~g~~ 155 (464)
T 2a8x_A 80 GIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTF-ADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPG---TSLS 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEE-SSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTT---CCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCC---CCCC
Confidence 000000 000011344566799999985543 4333234555566 689999999999999988774 5543
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
.. ++ +..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 156 ~~-~~---~~~~~~~~~----~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~ 225 (464)
T 2a8x_A 156 AN-VV---TYEEQILSR----E-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPN-EDADVSKEIEKQFKKL 225 (464)
T ss_dssp TT-EE---CHHHHHTCS----S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHH
T ss_pred ce-EE---ecHHHhhcc----c-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHHHHc
Confidence 22 33 444443321 1 4789999999999999999999999999999999999985 8999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCc
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADD 291 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g--~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~ 291 (434)
||++++++++++++.++++ ..+.+. +| +++++|.|++|+|++||+++ ++ .++.. ++|+|.||+++||++|+
T Consensus 226 gv~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~ 303 (464)
T 2a8x_A 226 GVTILTATKVESIADGGSQ--VTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGH 303 (464)
T ss_dssp TCEEECSCEEEEEEECSSC--EEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTT
T ss_pred CCEEEeCcEEEEEEEcCCe--EEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCC
Confidence 9999999999999873333 345554 56 67999999999999999986 33 36666 46889999999999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcc-cCCCCCCeeEEeccCceeEEeecCC------C
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTV-TGYDYLPYFYSRAFDLSWQFYGDNV------G 364 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~g~~~------~ 364 (434)
|||+|||++.+ ..+..|..||+.||.||++... .. ..|..+|++.+. +..+..+|.++ |
T Consensus 304 IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~~p~~~~~--~~~~a~vG~~e~~a~~~g 369 (464)
T 2a8x_A 304 IYAIGDVNGLL----------QLAHVAEAQGVVAAETIAGAET--LTLGDHRMLPRATFC--QPNVASFGLTEQQARNEG 369 (464)
T ss_dssp EEECGGGGCSS----------CSHHHHHHHHHHHHHHHHTCCC--CCCCCGGGSCEEECS--SSEEEEEECCHHHHHHTT
T ss_pred EEEeECcCCCc----------cCHHHHHHHHHHHHHHhcCCCC--cccCCCCCCCEEEEC--CCCeEEEcCCHHHHHhcC
Confidence 99999999754 4577899999999999997321 12 345667866544 45566668764 2
Q ss_pred CEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+..... .+. ....+|+|++++ +++|||+|++|+.+.+ ++.++.||++++|++|+..+..+.++|.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 448 (464)
T 2a8x_A 370 YDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSE 448 (464)
T ss_dssp CCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTH
T ss_pred CCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHH
Confidence 22222211 111 245679998884 8999999999999877 59999999999999988776666666654
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=375.66 Aligned_cols=397 Identities=23% Similarity=0.280 Sum_probs=283.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCCCC----------CCCCC----
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----------TARLP---- 64 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----------~~~~~---- 64 (434)
+.++||+|||||+||+++|..|++.|.+ |+|||+++..+.. .+..++.++.... ...++
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~---V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 80 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV 80 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 3468999999999999999999999987 9999998543211 0011111110000 00000
Q ss_pred --CcccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcccccCCCC
Q 013914 65 --GFHVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVLRLTDFGV 134 (434)
Q Consensus 65 --~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~ 134 (434)
.+...... ........++++.+++++.++.+. ++.....+.+.+| .+++||++|+|||+.|+.|+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~---~ 156 (470)
T 1dxl_A 81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKF-VSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLP---G 156 (470)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEE-EETTEEEECCSSSCCEEEECSEEEECCCEEECCBT---T
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEE-ecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCC---C
Confidence 00000000 000011234556799999986554 6654334545566 67999999999999998887 4
Q ss_pred CCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHH
Q 013914 135 EGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGY 214 (434)
Q Consensus 135 ~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~ 214 (434)
+|.+..++++ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 157 ~g~~~~~v~~---~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~ 227 (470)
T 1dxl_A 157 VTIDEKKIVS---STGALAL----S-EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRS 227 (470)
T ss_dssp BCCCSSSEEC---HHHHTTC----S-SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHH
T ss_pred CCCCcccEEe---HHHhhhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-ccHHHHHHHHHH
Confidence 5554445553 3333322 1 14789999999999999999999999999999999999985 899999999999
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFF 285 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~ 285 (434)
+++.||+++++++|.+++.++++ ..+.+. +| +++++|.|++|+|++||+++ ++ .++.. ++|+|.||+++
T Consensus 228 l~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 305 (470)
T 1dxl_A 228 LEKQGMKFKLKTKVVGVDTSGDG--VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF 305 (470)
T ss_dssp HHHSSCCEECSEEEEEEECSSSS--EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC
T ss_pred HHHcCCEEEeCCEEEEEEEcCCe--EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC
Confidence 99999999999999999873333 345543 44 68999999999999999987 33 35666 46889999999
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC--
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-- 363 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-- 363 (434)
||++|+|||+|||+..+ ..+..|..||+.||.||++.. ....|..+|++.+ ++..+..+|.++
T Consensus 306 ~t~~~~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~--~~~~~a~vG~~e~~ 370 (470)
T 1dxl_A 306 STNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV---GHVDYDKVPGVVY--TNPEVASVGKTEEQ 370 (470)
T ss_dssp BCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC---CCCCTTSCCEEEC--SSSEEEEEECCHHH
T ss_pred ccCCCCEEEEeccCCCC----------ccHHHHHHHHHHHHHHHcCCC---cCCCCCCCCEEEE--CCCceEEEcCCHHH
Confidence 99999999999999754 457789999999999999742 1244556676544 455566668764
Q ss_pred ----CCEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCC
Q 013914 364 ----GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGL 428 (434)
Q Consensus 364 ----~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~ 428 (434)
|..+..... .+. ....+|+|++++ +++|||+|++|+.+.++ +.++.||++++|++|+..+..+.+
T Consensus 371 a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~P 450 (470)
T 1dxl_A 371 VKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHP 450 (470)
T ss_dssp HHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSS
T ss_pred HHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 222222211 111 245679998884 79999999999998885 999999999999998887766666
Q ss_pred Cccc
Q 013914 429 SFAS 432 (434)
Q Consensus 429 ~~~~ 432 (434)
+|.+
T Consensus 451 t~~e 454 (470)
T 1dxl_A 451 TMSE 454 (470)
T ss_dssp CTTH
T ss_pred ChHH
Confidence 6654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=384.15 Aligned_cols=395 Identities=21% Similarity=0.256 Sum_probs=284.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEe---------CCCCCCC---CCCccCccccCCCCC----CCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIIS---------KEAVAPY---ERPALSKAYLFPEGT----ARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie---------~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~ 66 (434)
.++||+|||||++|+++|.+|++ .|.+ |+||| ++...+- ..|..++.++..... ...+.+
T Consensus 2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~---V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~ 78 (490)
T 1fec_A 2 RAYDLVVIGAGSGGLEAGWNAASLHKKR---VAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGF 78 (490)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCC---EEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccccEEEECCCHHHHHHHHHHHHHcCCE---EEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999 8987 99999 3321110 001111111110000 000000
Q ss_pred ccccC-----CCC--------------CCCChhhHhhc-CcEEEcCCeeEEEECCCCEEEcc-----CC---cEEEcceE
Q 013914 67 HVCVG-----SGG--------------ERLLPEWYKEK-GIELILSTEIVRADIASKTLLSA-----TG---LIFKYQIL 118 (434)
Q Consensus 67 ~~~~~-----~~~--------------~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~~v~~~-----~~---~~~~~d~l 118 (434)
..... ... .......+++. +++++.+ .+..++. +++.+. ++ .++.||+|
T Consensus 79 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~l 155 (490)
T 1fec_A 79 GWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYI 155 (490)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEE
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEE
Confidence 00000 000 00112234556 9999998 5666764 456553 56 67999999
Q ss_pred EEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccC
Q 013914 119 VIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPE 195 (434)
Q Consensus 119 vlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~ 195 (434)
|+|||++|+.|+ ++|.+ .+ .+..++..+. ..+++++|||+|++|+|+|..|.+. |.+|+++++.
T Consensus 156 viAtGs~p~~p~---i~g~~--~~---~~~~~~~~~~-----~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~ 222 (490)
T 1fec_A 156 LLATGSWPQHLG---IEGDD--LC---ITSNEAFYLD-----EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG 222 (490)
T ss_dssp EECCCEEECCCC---SBTGG--GC---BCHHHHTTCS-----SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred EEeCCCCCCCCC---CCCcc--ce---ecHHHHhhhh-----hcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcC
Confidence 999999998877 45542 22 2344433221 1478999999999999999999999 9999999999
Q ss_pred CccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--h-hccc
Q 013914 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--F-KGQV 272 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~--~-~~~~ 272 (434)
+++++. +++++.+.+.+.+++.||+++++++|+++..++++. ..+.+.+|+++++|.||+|+|++|+++. + ..++
T Consensus 223 ~~~l~~-~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl 300 (490)
T 1fec_A 223 DMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGV 300 (490)
T ss_dssp SSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTC
T ss_pred CCcccc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCc
Confidence 999986 899999999999999999999999999998743333 4678889989999999999999999973 3 3466
Q ss_pred cc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEec
Q 013914 273 AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRA 351 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~ 351 (434)
.. ++|+|.||+++||++|+|||+|||++.+ .++..|..||+.+|.||++... ....|..+|+..++.
T Consensus 301 ~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~ 368 (490)
T 1fec_A 301 EVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFANKP--RATDHTKVACAVFSI 368 (490)
T ss_dssp CBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCHHHHHHHHHHHHHHHHSSCC--CCCCCSSCCEEECCS
T ss_pred cCCCCCCEEECCCCccCCCCEEEEeccCCCc----------cCHHHHHHHHHHHHHHhcCCCC--CcCCCCCccEEEECC
Confidence 66 4789999999999999999999999643 5788899999999999997532 125667778765554
Q ss_pred cCceeEEeecCCC------CEEEEcC--CCc------ccCCCcEE-EEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHc
Q 013914 352 FDLSWQFYGDNVG------DTVLFGD--NDL------ASATHKFG-TYWIK--DGKVVGVFLESGTPEEN-KAIAKVARV 413 (434)
Q Consensus 352 ~~~~~~~~g~~~~------~~~~~~~--~~~------~~~~~~~~-~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~ 413 (434)
+ .+..+|.++. ..+.... ... ...+..|+ |++++ +++|||+|++|+++.++ +.++.||++
T Consensus 369 ~--~~a~vG~~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~ 446 (490)
T 1fec_A 369 P--PMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKM 446 (490)
T ss_dssp S--CEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred C--CeEEEeCCHHHHHhcCCCEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHc
Confidence 4 4555676542 1222111 110 02356799 98884 79999999999998885 999999999
Q ss_pred CCCCCChhhhhccCCCcccc
Q 013914 414 QPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 414 ~~~~~~~~~l~~~~~~~~~~ 433 (434)
++|++|+..+.-+.+++.+.
T Consensus 447 ~~t~~~l~~~~~~hPt~~e~ 466 (490)
T 1fec_A 447 GAKISDFYNTIGVHPTSAEE 466 (490)
T ss_dssp TCBHHHHHTSCCCSSCSGGG
T ss_pred CCCHHHHhccccCCCCHHHH
Confidence 99999888777777776653
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=378.96 Aligned_cols=394 Identities=21% Similarity=0.255 Sum_probs=285.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC----CCCCCCcccccCC----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS---- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---- 72 (434)
.++||+|||||++|+++|..|+++|.+ |+|||++...+ +..|..++.++.... ....+.+......
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 101 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKR---VAIAEEYRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFN 101 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCE---EEEEeCCCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccC
Confidence 468999999999999999999999987 99999954311 000111111100000 0000000000000
Q ss_pred -------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcc-cccCCCCCCC
Q 013914 73 -------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVL-RLTDFGVEGA 137 (434)
Q Consensus 73 -------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~-~~~~~~~~g~ 137 (434)
.........+.+.+++++.+ .+..++ .+.+.+. ++..+.||++|+|||+.|. .|+ ++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~--~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~---i~G~ 175 (484)
T 3o0h_A 102 WEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVD--EHTLELSVTGERISAEKILIATGAKIVSNSA---IKGS 175 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEETTTCCEEEEEEEEECCCEEECCC-----CBTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEee--CCEEEEecCCeEEEeCEEEEccCCCcccCCC---CCCc
Confidence 00011223455679999997 566665 4566665 6778999999999999998 776 4554
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+ .+++........ ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 176 ~--~~~~~~~~~~~~--------~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~ 244 (484)
T 3o0h_A 176 D--LCLTSNEIFDLE--------KLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVA 244 (484)
T ss_dssp G--GSBCTTTGGGCS--------SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred c--ccccHHHHHhHH--------hcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHH
Confidence 3 122222222111 14789999999999999999999999999999999998886 799999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
.||+++++++|++++.+++ . ..+.+.+|+++++|.||+|+|++|+++++ ..++.. ++|+|.||+++||++|+||
T Consensus 245 ~Gv~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy 322 (484)
T 3o0h_A 245 KGISIIYEATVSQVQSTEN-C-YNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIW 322 (484)
T ss_dssp HTCEEESSCCEEEEEECSS-S-EEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEE
T ss_pred CCCEEEeCCEEEEEEeeCC-E-EEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEE
Confidence 9999999999999987433 3 47888999999999999999999999853 346666 6788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEE
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTV 367 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~ 367 (434)
|+|||++.+ ..+..|..||+.+|.||++.... ...+..+|+.+++.+++ ..+|+++ +..+
T Consensus 323 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~~~~p~~--a~vGlte~~a~~~g~~~ 388 (484)
T 3o0h_A 323 AVGDVTGHI----------QLTPVAIHDAMCFVKNAFENTST--TPDYDLITTAVFSQPEI--GTVGLSEEDALHRYKRV 388 (484)
T ss_dssp ECGGGGTSC----------CCHHHHHHHHHHHHHHHHC---C--CCCCTTCCEEECCSSCE--EEEECCHHHHHHHCSEE
T ss_pred EEEecCCCC----------cCHHHHHHHHHHHHHHHcCCCCC--cCCCCCCcEEEECCCCE--EEeeCCHHHHHHcCCCE
Confidence 999999743 56778999999999999975432 25677788877665554 4557665 3222
Q ss_pred EEcCCCc--------ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 368 LFGDNDL--------ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 368 ~~~~~~~--------~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
.....+. .....+++|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.-+.+++++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 465 (484)
T 3o0h_A 389 EIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEE 465 (484)
T ss_dssp EEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGG
T ss_pred EEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHH
Confidence 2221111 023578899887 479999999999999885 99999999999999888877777776654
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-48 Score=378.18 Aligned_cols=398 Identities=21% Similarity=0.263 Sum_probs=281.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCCCC-----CCCCCCccccc-C
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG-----TARLPGFHVCV-G 71 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~-~ 71 (434)
|++++||+|||||+||+++|..|++.|.+ |+|||+++..+.. .+..++.++.... ......+.... .
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~---V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~ 78 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNG 78 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 44578999999999999999999999986 9999996542200 0011111111000 00000000000 0
Q ss_pred C---CC--------------CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cE------EEcceEEEecCCCc
Q 013914 72 S---GG--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LI------FKYQILVIATGSTV 126 (434)
Q Consensus 72 ~---~~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~------~~~d~lvlAtG~~~ 126 (434)
. .. .....+++++.+++++.++.+. .+....++.+.++ .+ +.||+||+|||+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p 157 (478)
T 1v59_A 79 DIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV 157 (478)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence 0 00 0002234566799999986554 2222223445555 46 99999999999988
Q ss_pred ccccCCCCCCCCCC--CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCC
Q 013914 127 LRLTDFGVEGADAK--NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 127 ~~~~~~~~~g~~~~--~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~ 204 (434)
+.+ ++.+.. .++ +..++..+. . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++
T Consensus 158 ~~~-----~g~~~~~~~v~---~~~~~~~~~----~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~ 223 (478)
T 1v59_A 158 TPF-----PGIEIDEEKIV---SSTGALSLK----E-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MD 223 (478)
T ss_dssp CCC-----TTCCCCSSSEE---CHHHHTTCS----S-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SC
T ss_pred CCC-----CCCCCCCceEE---cHHHHHhhh----c-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc-cC
Confidence 432 333222 233 444443321 1 4789999999999999999999999999999999999985 89
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-----CCcEEECCEEEEcccCccChh--hhh-ccccc-c
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-----DGRTLEADIVVVGVGGRPLIS--LFK-GQVAE-N 275 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-----~g~~~~~D~vi~a~G~~p~~~--~~~-~~~~~-~ 275 (434)
+++.+.+.+.+++.||+++++++|+++...+++....+.+. +++++++|.|++|+|++|+++ +++ .++.. +
T Consensus 224 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~ 303 (478)
T 1v59_A 224 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDK 303 (478)
T ss_dssp HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCT
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCC
Confidence 99999999999999999999999999986213333456654 456899999999999999997 443 45666 4
Q ss_pred CCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCce
Q 013914 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS 355 (434)
Q Consensus 276 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~ 355 (434)
+|+|.||+++||+.|+|||+|||+..+ ..+..|..||+.||.||++... ...|..+|++++..+++
T Consensus 304 ~G~i~vd~~~~t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~p~~~~~~~~~- 369 (478)
T 1v59_A 304 RGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGHG---HVNYNNIPSVMYSHPEV- 369 (478)
T ss_dssp TSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSCC---CCCTTSCCEEECSSSEE-
T ss_pred CCCEeECcCCccCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCC---CCCCCCCCEEEEcCCcE-
Confidence 788999999999999999999999854 4567899999999999997431 25677788877766554
Q ss_pred eEEeecCC------CCEEEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHH-HHHHHHHHHcCCCCC
Q 013914 356 WQFYGDNV------GDTVLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEE-NKAIAKVARVQPSVE 418 (434)
Q Consensus 356 ~~~~g~~~------~~~~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~-~~~~~~~i~~~~~~~ 418 (434)
..+|.++ |..+..... .+. ....+++|++++ +++|+|++++|+.+.+ ++.++.+|++++|++
T Consensus 370 -a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~ 448 (478)
T 1v59_A 370 -AWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAE 448 (478)
T ss_dssp -EEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred -EEEECCHHHHHHcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence 5557654 322222111 111 234678888774 7999999999999877 599999999999999
Q ss_pred ChhhhhccCCCccc
Q 013914 419 SLDVLKNEGLSFAS 432 (434)
Q Consensus 419 ~~~~l~~~~~~~~~ 432 (434)
|+..+..+.++|.+
T Consensus 449 ~l~~~~~~~Pt~~e 462 (478)
T 1v59_A 449 DVARVCHAHPTLSE 462 (478)
T ss_dssp HHHTSCCCTTCTTH
T ss_pred HHhhCCCCCCCHHH
Confidence 88877777776654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=370.72 Aligned_cols=394 Identities=21% Similarity=0.279 Sum_probs=280.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCC----CCCCCCCcccccCCC----
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE----GTARLPGFHVCVGSG---- 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---- 73 (434)
++||+|||||+||+++|..|++.|.+ |+|||++...+ ...+..++.++... .......+.......
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~---V~lie~~~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 58999999999999999999999886 99999983211 00011111111000 000000000000000
Q ss_pred -------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecCCCcccccCCCCCCCCC
Q 013914 74 -------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATGSTVLRLTDFGVEGADA 139 (434)
Q Consensus 74 -------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG~~~~~~~~~~~~g~~~ 139 (434)
......+++++.+++++.++.+ .++.....+.+.++ .++.||+||+|||++|+.|+. ++.+.
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~---~g~~~ 155 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAY-FVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPN---FKFSN 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEE-EEETTEEEEEETTEEEEEECSEEEECCCEEECCBTT---BCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-EccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCC---CCccc
Confidence 0001133455679999998554 36654445555566 679999999999999988874 55432
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
.++ +..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 156 -~v~---~~~~~~~~----~-~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~g 225 (455)
T 1ebd_A 156 -RIL---DSTGALNL----G-EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKG 225 (455)
T ss_dssp -SEE---CHHHHHTC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTT
T ss_pred -eEe---cHHHHhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCC
Confidence 233 44444332 1 14789999999999999999999999999999999999886 79999999999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeC---CCcEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCcE
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLK---DGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~---~g~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
|+++++++|++++.++++ ..+.+. +++++++|.|++|+|++|++++ ++ .++.. ++|+|.||+++||++|+|
T Consensus 226 v~i~~~~~v~~i~~~~~~--~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I 303 (455)
T 1ebd_A 226 VEVVTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 303 (455)
T ss_dssp CEEEESEEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred CEEEeCCEEEEEEEeCCe--EEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence 999999999999863322 345543 4568999999999999999986 33 35666 468899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||+..+ ..+..|..||+.||.||.+.. ....|..+|++.+. +..+..+|.++ +..
T Consensus 304 ya~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~~--~~~~a~vG~~e~~a~~~g~~ 368 (455)
T 1ebd_A 304 FAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP---SAVDYVAIPAVVFS--DPECASVGYFEQQAKDEGID 368 (455)
T ss_dssp EECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC---CCCCCSCCCEEECS--SSCEEEEECCHHHHHTTTCC
T ss_pred EEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC---ccCCCCCCCEEEEC--CCceEEEeCCHHHHHhcCCC
Confidence 9999999754 457788999999999999742 12445667765544 44555667654 222
Q ss_pred EEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+..... .+. ....+|+|++++ +++|||+|++|+.+.++ +.++.||++++|++|+..+.-+.++|.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 445 (455)
T 1ebd_A 369 VIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGE 445 (455)
T ss_dssp EEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTH
T ss_pred EEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence 222211 111 245679998884 89999999999998885 9999999999999988877666666654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=367.88 Aligned_cols=395 Identities=20% Similarity=0.251 Sum_probs=285.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC----CCCCCCcccccCC--C
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG----TARLPGFHVCVGS--G 73 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~ 73 (434)
++++||+|||||+||+++|.+|++.|.+ |+|||++...+ +..|.+++.++.... ....+.+.+.... .
T Consensus 2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 2 TQHFDLIAIGGGSGGLAVAEKAAAFGKR---VALIESKALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred CccCcEEEECCCHHHHHHHHHHHhCCCc---EEEEcCCCCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 4579999999999999999999999887 99999984311 000111111110000 0000000000000 0
Q ss_pred C---------------CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 G---------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 ~---------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
. ...+...+.+.+++++.+ .+..++ .++|.+ ++.++.||+||+|||+.|+.|+ ++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~-~g~~~~~d~lviAtGs~p~~p~---i~G~~ 151 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVD--AHTIEV-EGQRLSADHIVIATGGRPIVPR---LPGAE 151 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEE--TTEEEE-TTEEEEEEEEEECCCEEECCCS---CTTGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEcc--CCEEEE-CCEEEEcCEEEECCCCCCCCCC---CCCcc
Confidence 0 001122345679999998 455555 456766 6678999999999999998877 46542
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
.+ .+..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 152 --~~---~~~~~~~~~----~-~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~ 220 (463)
T 2r9z_A 152 --LG---ITSDGFFAL----Q-QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQ 220 (463)
T ss_dssp --GS---BCHHHHHHC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHT
T ss_pred --ce---ecHHHHhhh----h-ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHC
Confidence 12 234444332 1 14789999999999999999999999999999999998876 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVY 293 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iy 293 (434)
||+++++++|++++.++++ ..+.+.+|+ ++++|.|++|+|++|+++.+ ..++.. ++|+|.||+++||++|+||
T Consensus 221 gv~i~~~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iy 298 (463)
T 2r9z_A 221 GIETHLEFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVY 298 (463)
T ss_dssp TCEEESSCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEE
T ss_pred CCEEEeCCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEE
Confidence 9999999999999873333 578889998 89999999999999999732 336666 5788999999999999999
Q ss_pred EecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC-------CCE
Q 013914 294 AVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV-------GDT 366 (434)
Q Consensus 294 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~-------~~~ 366 (434)
|+|||++.+ .++..|..||+.+|.||++.... ....|..+|+.+++.+++.. +|+++ |..
T Consensus 299 a~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~~~p~~~~~~~~~a~--vGl~e~~a~~~~g~~ 365 (463)
T 2r9z_A 299 ALGDITGRD----------QLTPVAIAAGRRLAERLFDGQSE-RKLDYDNIPTVVFAHPPLSK--VGLSEPEARERLGDV 365 (463)
T ss_dssp ECGGGGTSC----------CCHHHHHHHHHHHHHHHHSCCTT-CCCCCSSCCEEECCSSCEEE--EECCHHHHHHHHCSC
T ss_pred EEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCc-ccCCCCCCCEEEeCCCCeEE--EcCCHHHHHhcCCCC
Confidence 999998743 56788999999999999975321 11456778887766555544 46542 221
Q ss_pred EEE-----cCCCc---ccCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 367 VLF-----GDNDL---ASATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 367 ~~~-----~~~~~---~~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
+.. ..... ......|+|+++ ++++|||+|++|+++.++ +.++.||+.++|++|+..+..+.+++.+.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 443 (463)
T 2r9z_A 366 LTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEE 443 (463)
T ss_dssp EEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGG
T ss_pred EEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHH
Confidence 211 11111 123567888887 479999999999998885 99999999999999888777777766553
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=370.66 Aligned_cols=391 Identities=22% Similarity=0.295 Sum_probs=281.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC---------CCCC---CCcccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG---------TARL---PGFHVC 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~---------~~~~---~~~~~~ 69 (434)
++||+|||||+||+++|..|++.|.+ |+|||+++..+ +..+..++.++.... ...+ +.+.+.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLK---VLAVEAGEVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 58999999999999999999999886 99999986311 001111221111000 0000 000000
Q ss_pred --cCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCC
Q 013914 70 --VGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKN 141 (434)
Q Consensus 70 --~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~ 141 (434)
... ........++++.+++++.++.+. ++ .+++.+. ++++.||+||+|||++|+.|+ ++++ + ..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~-g~~~~~d~lViATGs~p~~p~--gi~~-~-~~ 154 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARL-VG--PKEVEVG-GERYGAKSLILATGSEPLELK--GFPF-G-ED 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEE-EE--TTEEEET-TEEEEEEEEEECCCEEECCBT--TBCC-S-SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEE-cc--CCEEEEc-cEEEEeCEEEEcCCCCCCCCC--CCCC-C-Cc
Confidence 000 000001234566799999985443 54 4677766 678999999999999998775 3555 2 24
Q ss_pred eEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcE
Q 013914 142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIK 221 (434)
Q Consensus 142 v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~ 221 (434)
++ +..++..+ ....+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||+
T Consensus 155 v~---~~~~~~~l----~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gV~ 226 (464)
T 2eq6_A 155 VW---DSTRALKV----EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQ-GDPETAALLRRALEKEGIR 226 (464)
T ss_dssp EE---CHHHHTCG----GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCE
T ss_pred EE---cHHHHHhh----hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhcCCE
Confidence 44 44444332 2214789999999999999999999999999999999999885 7999999999999999999
Q ss_pred EEcCCeEEEEEecCCCcEEEEEeC-C--Cc--EEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCCcE
Q 013914 222 IIKGTVAVGFTTNADGEVKEVKLK-D--GR--TLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDV 292 (434)
Q Consensus 222 ~~~~~~v~~i~~~~~g~v~~v~~~-~--g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~i 292 (434)
++++++|++++.++ +. ..+.+. + |+ ++++|.|++|+|++|+++++ ..++.. ++|+|.||+++||++|+|
T Consensus 227 i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I 304 (464)
T 2eq6_A 227 VRTKTKAVGYEKKK-DG-LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV 304 (464)
T ss_dssp EECSEEEEEEEEET-TE-EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred EEcCCEEEEEEEeC-CE-EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence 99999999998732 22 356665 6 76 89999999999999999863 345666 578899999999999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCE
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDT 366 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~ 366 (434)
||+|||++.+ ..+..|..||+.||.||++.. ....+. +|++..+ +..+..+|.++ |..
T Consensus 305 ya~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~---~~~~~~-~p~~~~~--~~~~a~vG~~e~~a~~~g~~ 368 (464)
T 2eq6_A 305 YAIGDAARPP----------LLAHKAMREGLIAAENAAGKD---SAFDYQ-VPSVVYT--SPEWAGVGLTEEEAKRAGYK 368 (464)
T ss_dssp EECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCC-CCEEECS--SSEEEEEECCHHHHHHTTCC
T ss_pred EEEeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---cccCCC-CCeEEEC--CCCEEEEeCCHHHHHhcCCC
Confidence 9999999754 457789999999999999743 124555 7765443 45556667664 222
Q ss_pred EEEcCC-----Ccc---cCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 367 VLFGDN-----DLA---SATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 367 ~~~~~~-----~~~---~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+..+.. .+. ....+|+|++++ +++|||+|++|+.+.++ +.++.||++++|++|+..+.-+.++|.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 445 (464)
T 2eq6_A 369 VKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSE 445 (464)
T ss_dssp EEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTH
T ss_pred EEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHH
Confidence 222211 111 235678998884 79999999999998885 9999999999999988876666666653
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=368.34 Aligned_cols=402 Identities=20% Similarity=0.226 Sum_probs=275.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCC---------CCCCC---CCcccc
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE---------GTARL---PGFHVC 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~---------~~~~~---~~~~~~ 69 (434)
++||+|||||+||+++|..|++.|.+ |+|||++...+ +..|..++.++... ....+ +.+.+.
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~---V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 48999999999999999999999887 99999985311 00111111111000 00000 000000
Q ss_pred --cC------CCCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccC-------------CcEEEcceEEEecCCCccc
Q 013914 70 --VG------SGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSAT-------------GLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 70 --~~------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~-------------~~~~~~d~lvlAtG~~~~~ 128 (434)
.. ..........+++.+++++.++ +..++ .+++.+.+ +.++.||+||+|||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id--~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~ 155 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLS--ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVF 155 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEee--CCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCC
Confidence 00 0000011233456799999884 33333 34555433 5679999999999999988
Q ss_pred ccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHH
Q 013914 129 LTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA 208 (434)
Q Consensus 129 ~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~ 208 (434)
|+ ++|.+ .+++ ..++..+ . .+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.
T Consensus 156 p~---i~G~~--~~~~---~~~~~~~----~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~ 220 (500)
T 1onf_A 156 PP---VKGIE--NTIS---SDEFFNI----K--ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVI 220 (500)
T ss_dssp CS---CTTGG--GCEE---HHHHTTC----C--CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHH
T ss_pred CC---CCCCC--cccC---HHHHhcc----C--CCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcc-cchhhH
Confidence 77 56642 2333 2333221 1 2789999999999999999999999999999999999985 899999
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccCccChh-h-h-hccccccCCcEEeCCC
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGGRPLIS-L-F-KGQVAENKGGIETDDF 284 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~-~~~D~vi~a~G~~p~~~-~-~-~~~~~~~~g~i~vd~~ 284 (434)
+.+.+.+++.||+++++++|++++.++++. ..+.+.+|++ +++|.|++|+|++|+++ + + ..++..++|+|.||++
T Consensus 221 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~ 299 (500)
T 1onf_A 221 NVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDEN 299 (500)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTT
T ss_pred HHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCC
Confidence 999999999999999999999998743343 4678889988 99999999999999996 3 3 3356557788999999
Q ss_pred CCCCCCcEEEecccccccccc-----------------------cC-cceecccHHHHHHHHHHHHHHHhccCCCCcccC
Q 013914 285 FKTSADDVYAVGDVATFPMKL-----------------------YR-EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 340 (434)
+||++|+|||+|||+..+... .+ ....+.++..|.+||+.||+||++... ....
T Consensus 300 ~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~ 377 (500)
T 1onf_A 300 QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKT--RKTN 377 (500)
T ss_dssp CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTT--CCCC
T ss_pred cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCC--ccCC
Confidence 999999999999999532100 00 002346889999999999999997432 2255
Q ss_pred CCCCCeeEEeccCceeEEeecCC-------C-CEEEE-----cCCC-------cccCCCcEEEEEE--eCCEEEEEEEec
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV-------G-DTVLF-----GDND-------LASATHKFGTYWI--KDGKVVGVFLES 398 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~-------~-~~~~~-----~~~~-------~~~~~~~~~~~~~--~~~~ilG~~~~g 398 (434)
|..+|++.++.++ +..+|.++ | ..+.. .... .......|+|+++ ++++|||+|++|
T Consensus 378 ~~~~p~~~~~~~~--~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g 455 (500)
T 1onf_A 378 YKLIPTVIFSHPP--IGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG 455 (500)
T ss_dssp CSSCCEEECCSSC--EEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred CCCCCeEEEcCcc--eEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEEC
Confidence 7778876665454 45557653 2 11111 1111 1123567889888 579999999999
Q ss_pred CCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 399 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 399 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+++.++ +.++.||+.++|++|+..+.-+.+++++
T Consensus 456 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e 490 (500)
T 1onf_A 456 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAE 490 (500)
T ss_dssp TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHH
Confidence 998885 9999999999999988877777766654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-48 Score=378.34 Aligned_cols=398 Identities=16% Similarity=0.094 Sum_probs=278.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC---CCCccCccccCCC----CCCCCCCcccccCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY---ERPALSKAYLFPE----GTARLPGFHVCVGSG 73 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 73 (434)
|+..++||+|||||+||++||..|++.|.+ |+|||++...+- ..|.+++.++... .....+.+.......
T Consensus 4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liE~~~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~ 80 (492)
T 3ic9_A 4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDK---VVLIEGGAYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRI 80 (492)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHTTCSC---EEEEESSCSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEE
T ss_pred CccCCCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCC
Confidence 333358999999999999999999999987 999999753210 0111122221110 001111111100000
Q ss_pred --CC----CCC-----------hhhHhh-cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCC
Q 013914 74 --GE----RLL-----------PEWYKE-KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVE 135 (434)
Q Consensus 74 --~~----~~~-----------~~~~~~-~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~ 135 (434)
.. ... ...+.. .+++++.+.... .+.+++.+.++.++.||++|||||++|+.|+. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~---~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~---~ 154 (492)
T 3ic9_A 81 SVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKF---LDEHTLQVDDHSQVIAKRIVIATGSRPNYPEF---L 154 (492)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEE---EETTEEEETTTEEEEEEEEEECCCEECCCCHH---H
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEE---ecCCEEEEcCCcEEEeCEEEEccCCCCcCCCC---C
Confidence 00 000 011111 234555553222 23567888788899999999999999988773 3
Q ss_pred CCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 136 g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
+.....+++. .+...+ ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+
T Consensus 155 ~~~~~~v~t~---~~~~~~-----~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l 225 (492)
T 3ic9_A 155 AAAGSRLLTN---DNLFEL-----NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL-QDEEMKRYAEKTF 225 (492)
T ss_dssp HTTGGGEECH---HHHTTC-----SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC-CCHHHHHHHHHHH
T ss_pred CccCCcEEcH---HHHhhh-----hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-CCHHHHHHHHHHH
Confidence 3333445533 333221 114799999999999999999999999999999999999876 7999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeC-CCCC
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETD-DFFK 286 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd-~~~~ 286 (434)
++. |++++++++++++.++++ + .+.+. +| +++++|.|++|+|++|+++++ ..++.. ++|+|.|| +++|
T Consensus 226 ~~~-V~i~~~~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~ 302 (492)
T 3ic9_A 226 NEE-FYFDAKARVISTIEKEDA-V-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQ 302 (492)
T ss_dssp HTT-SEEETTCEEEEEEECSSS-E-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCB
T ss_pred hhC-cEEEECCEEEEEEEcCCE-E-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECccccc
Confidence 998 999999999999874333 3 45553 67 689999999999999999863 336666 67899999 9999
Q ss_pred CCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCCC--
Q 013914 287 TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVG-- 364 (434)
Q Consensus 287 t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~-- 364 (434)
|++|+|||+|||++.+ ..+..|..||+.||.||++.... ....+..+|+..++. ..+..+|+++.
T Consensus 303 t~~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~p~~~~~~--p~~a~vGlte~~a 369 (492)
T 3ic9_A 303 TSVDHIFVAGDANNTL----------TLLHEAADDGKVAGTNAGAYPVI-AQGQRRAPLSVVFTE--PQVASVGLSLRQI 369 (492)
T ss_dssp CSSTTEEECGGGGTSS----------CSHHHHHHHHHHHHHHHHHTTSC-CEECCCCCEEEECSS--SEEEEEESCHHHH
T ss_pred CCCCCEEEEEecCCCC----------ccHHHHHHHHHHHHHHHcCCCCC-cccCCCCCcEEEECC--CCeEEecCCHHHH
Confidence 9999999999999864 46778999999999999974221 124555666655544 44555576641
Q ss_pred ---------CEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh
Q 013914 365 ---------DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 365 ---------~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~ 424 (434)
..+..+..+ +. ..+.+|+|+++ ++++|||+|++|+++.++ +.++.||++++|++|+..+.
T Consensus 370 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 449 (492)
T 3ic9_A 370 EDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP 449 (492)
T ss_dssp HHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC
T ss_pred HhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC
Confidence 122222111 11 24568999887 579999999999999886 99999999999999887776
Q ss_pred ccCCCccc
Q 013914 425 NEGLSFAS 432 (434)
Q Consensus 425 ~~~~~~~~ 432 (434)
-+.+++++
T Consensus 450 ~~hPt~~e 457 (492)
T 3ic9_A 450 FYHPVIEE 457 (492)
T ss_dssp CCTTCTHH
T ss_pred CCCCChHH
Confidence 66666554
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=377.02 Aligned_cols=399 Identities=18% Similarity=0.174 Sum_probs=278.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC------CCc------cCccccCCCCC----CCCCCcc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE------RPA------LSKAYLFPEGT----ARLPGFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~------~~~------~~~~~~~~~~~----~~~~~~~ 67 (434)
.++||+|||||+||++||..|++.|.+ |+|||+++..++. ..+ .++.++..... .....+.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQYGKK---VMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999999999987 9999996421111 111 11111100000 0000000
Q ss_pred cccCCC------------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc--EEEcceEEEecCCCcc
Q 013914 68 VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL--IFKYQILVIATGSTVL 127 (434)
Q Consensus 68 ~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~ 127 (434)
...... ........++..+++++.+ .+..+++....+...+++ ++.||+||||||++|+
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~ 186 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPR 186 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEEC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcC
Confidence 000000 0000112345578999997 666677665566665664 7999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+. .+ .+..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++. .+++. +++++
T Consensus 187 ~p~---i~G~~~-~~---~t~~~~~~l----~-~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~ 252 (519)
T 3qfa_A 187 YLG---IPGDKE-YC---ISSDDLFSL----P-YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDM 252 (519)
T ss_dssp CCC---CTTHHH-HC---BCHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-SCHHH
T ss_pred CCC---CCCccC-ce---EcHHHHhhh----h-hcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-ccccc-CCHHH
Confidence 886 566321 12 233333222 1 24788999999999999999999999999999984 66665 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCC---CcE-EEEEeCCC-c--EEECCEEEEcccCccChhhh---hccccc--c
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNAD---GEV-KEVKLKDG-R--TLEADIVVVGVGGRPLISLF---KGQVAE--N 275 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~---g~v-~~v~~~~g-~--~~~~D~vi~a~G~~p~~~~~---~~~~~~--~ 275 (434)
.+.+.+.+++.||++++++.+.++...++ +.+ ..+...+| + ++++|.|++|+|++|+++++ ..++.. +
T Consensus 253 ~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 332 (519)
T 3qfa_A 253 ANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEK 332 (519)
T ss_dssp HHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTT
T ss_pred HHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCC
Confidence 99999999999999999988888865332 222 23334555 2 57899999999999999863 345666 3
Q ss_pred CCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCce
Q 013914 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS 355 (434)
Q Consensus 276 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~ 355 (434)
+|+|.||+++||++|+|||+|||+.... ..+..|..||+.||+||++.... ...|..+|+..++.+++
T Consensus 333 ~G~I~Vd~~~~Ts~~~IyA~GD~~~g~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~- 400 (519)
T 3qfa_A 333 TGKIPVTDEEQTNVPYIYAIGDILEDKV---------ELTPVAIQAGRLLAQRLYAGSTV--KCDYENVPTTVFTPLEY- 400 (519)
T ss_dssp TCCBCCCTTSBCSSTTEEECGGGBSSSC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSCE-
T ss_pred CCeEeeCCCCccCCCCEEEEEeccCCCC---------ccHHHHHHHHHHHHHHHcCCCCc--cCCCCcCcEEEECCCce-
Confidence 6889999999999999999999994221 56788999999999999976432 25677788776665555
Q ss_pred eEEeecCCCC--------EEE-----EcCCCc----ccCCCcEEEEEEe---CCEEEEEEEecCCHHHH-HHHHHHHHcC
Q 013914 356 WQFYGDNVGD--------TVL-----FGDNDL----ASATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQ 414 (434)
Q Consensus 356 ~~~~g~~~~~--------~~~-----~~~~~~----~~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~~~~i~~~ 414 (434)
..+|+++.+ .+. +..... ...+.+|+|++++ +++|||+|++|+++.++ +.++.||+++
T Consensus 401 -a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~ 479 (519)
T 3qfa_A 401 -GACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCG 479 (519)
T ss_dssp -EEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTT
T ss_pred -EEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 455766421 111 111000 0135689998873 59999999999998885 9999999999
Q ss_pred CCCCChhhhhccCCCcccc
Q 013914 415 PSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 415 ~~~~~~~~l~~~~~~~~~~ 433 (434)
+|++||..+.-+.+++++.
T Consensus 480 ~t~~~l~~~~~~hPt~~E~ 498 (519)
T 3qfa_A 480 LTKKQLDSTIGIHPVCAEV 498 (519)
T ss_dssp CBHHHHHHSCCCTTCGGGG
T ss_pred CCHHHHhccccCCCChHHH
Confidence 9999888777777776653
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-47 Score=373.78 Aligned_cols=398 Identities=20% Similarity=0.204 Sum_probs=280.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCcc------CccccCCC------------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPAL------SKAYLFPE------------ 58 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~------~~~~~~~~------------ 58 (434)
..|||+|||||+||++||..|+++|.+ |+|||+....+ +...++ ++.++...
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~ 84 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGAR---VACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY 84 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCE---EEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999987 99999532111 111111 11110000
Q ss_pred --CCCCCCCcccc--cCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCc-EEEcceEEEecCCCcc
Q 013914 59 --GTARLPGFHVC--VGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGL-IFKYQILVIATGSTVL 127 (434)
Q Consensus 59 --~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~ 127 (434)
.....+.+.+. ... .........++..+++++.+ ....++.....+.+.++. ++.||+||||||++|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~ 163 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPR 163 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEEC
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcC
Confidence 00000000000 000 00000112345678999987 555556555556666664 7999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+ ++|.+.. .+ +..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++. .+++. +++++
T Consensus 164 ~p~---i~G~~~~-~~---~~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~d~~~ 229 (483)
T 3dgh_A 164 YPD---IPGAVEY-GI---TSDDLFSL----D-REPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLRG-FDQQM 229 (483)
T ss_dssp CCS---STTHHHH-CB---CHHHHTTC----S-SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSSTT-SCHHH
T ss_pred CCC---CCCcccc-cC---cHHHHhhh----h-hcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCcc-cCHHH
Confidence 887 5664321 11 33333221 1 14789999999999999999999999999999884 56665 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-----EEECCEEEEcccCccChhhh---hccccccCCcE
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----TLEADIVVVGVGGRPLISLF---KGQVAENKGGI 279 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-----~~~~D~vi~a~G~~p~~~~~---~~~~~~~~g~i 279 (434)
.+.+.+.+++.||++++++.+.+++..+++.+ .+++.+++ ++++|.|++|+|++|+++++ ..++..+.|+|
T Consensus 230 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i 308 (483)
T 3dgh_A 230 AELVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKI 308 (483)
T ss_dssp HHHHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBB
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEE
Confidence 99999999999999999999999987444443 46665543 79999999999999999876 33566645999
Q ss_pred EeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEe
Q 013914 280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFY 359 (434)
Q Consensus 280 ~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 359 (434)
.||+++||++|+|||+|||+.... ..+..|..||+.||+||++... ....|..+|+++++.++++ .+
T Consensus 309 ~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~~p~~~~~~p~~a--~v 375 (483)
T 3dgh_A 309 PVDSQEATNVANIYAVGDIIYGKP---------ELTPVAVLAGRLLARRLYGGST--QRMDYKDVATTVFTPLEYA--CV 375 (483)
T ss_dssp CCCTTCBCSSTTEEECSTTBTTSC---------CCHHHHHHHHHHHHHHHHSCCC--CCCCCTTCCEEECSSSEEE--EE
T ss_pred EECcCCccCCCCEEEEEcccCCCC---------ccHHHHHHHHHHHHHHHcCCCC--CcCCCCCCCEEEECCCccE--EE
Confidence 999999999999999999984221 5677899999999999997642 2256778888777766554 45
Q ss_pred ecCCC--------C--EEEEcCC-Cc------ccCCCcEEEEEEe---CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCC
Q 013914 360 GDNVG--------D--TVLFGDN-DL------ASATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQPSVE 418 (434)
Q Consensus 360 g~~~~--------~--~~~~~~~-~~------~~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~ 418 (434)
|+++. . .+..... +. ...+.+|+|++++ +++|||+|++|+++.++ +.++.||++++|++
T Consensus 376 Glte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~ 455 (483)
T 3dgh_A 376 GLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTIN 455 (483)
T ss_dssp ECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHH
T ss_pred eCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH
Confidence 76641 1 1111111 10 0135679998873 59999999999999885 99999999999999
Q ss_pred ChhhhhccCCCcccc
Q 013914 419 SLDVLKNEGLSFASK 433 (434)
Q Consensus 419 ~~~~l~~~~~~~~~~ 433 (434)
||..+--+.+++++.
T Consensus 456 ~l~~~~~~hPt~~e~ 470 (483)
T 3dgh_A 456 TLINTVGIHPTTAEE 470 (483)
T ss_dssp HHHTSCCCSSCSGGG
T ss_pred HHhhcccCCCChHHH
Confidence 887776666666553
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=361.81 Aligned_cols=392 Identities=22% Similarity=0.256 Sum_probs=280.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC----CCccCccccCCCC----CCCCCCcccccCC---C
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE----RPALSKAYLFPEG----TARLPGFHVCVGS---G 73 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~---~ 73 (434)
++||+|||||+||+++|..|++.|.+ |+|||+++..+.. .+..++.++.... ... +.+...... .
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~~~~~~ 76 (455)
T 2yqu_A 1 MYDLLVIGAGPGGYVAAIRAAQLGMK---VGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVKGVELD 76 (455)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEECCEEEC
T ss_pred CCCEEEECCChhHHHHHHHHHHCCCe---EEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccCCCccC
Confidence 37999999999999999999999887 9999998543210 0111111110000 000 000000000 0
Q ss_pred C--------------CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEcc-CCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 74 G--------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSA-TGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 74 ~--------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
. ......++++.+++++.++.+ .+ +.+.+.+. ++.++.||+||+|||++|+.|+. ++.+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~-~i--~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~---~g~~ 150 (455)
T 2yqu_A 77 LPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR-FL--SERKVLVEETGEELEARYILIATGSAPLIPPW---AQVD 150 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-ES--SSSEEEETTTCCEEEEEEEEECCCEEECCCTT---BCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-Ee--cCCeEEEeeCCEEEEecEEEECCCCCCCCCCC---CCCC
Confidence 0 000123455678999998543 33 34444443 56789999999999999988874 5544
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
..++++ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 151 ~~~v~~---~~~~~~~----~-~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~ 221 (455)
T 2yqu_A 151 YERVVT---STEALSF----P-EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQ 221 (455)
T ss_dssp SSSEEC---HHHHTCC----S-SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHH
T ss_pred cCcEec---hHHhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHC
Confidence 345553 3333221 1 14789999999999999999999999999999999998885 7999999999999999
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh--hh-ccccc-cCCcEEeCCCCCCCCCcEEE
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--FK-GQVAE-NKGGIETDDFFKTSADDVYA 294 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~--~~-~~~~~-~~g~i~vd~~~~t~~~~iya 294 (434)
||+++++++|++++.+++ ...+.+.+|+++++|.||+|+|++|++++ ++ .++.. .+|+|.||+++||+.|+|||
T Consensus 222 Gv~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya 299 (455)
T 2yqu_A 222 GLTIRTGVRVTAVVPEAK--GARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYA 299 (455)
T ss_dssp TCEEECSCCEEEEEEETT--EEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred CCEEEECCEEEEEEEeCC--EEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEE
Confidence 999999999999987332 24677778889999999999999999886 33 35655 46889999999999999999
Q ss_pred ecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------CCEEE
Q 013914 295 VGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------GDTVL 368 (434)
Q Consensus 295 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~~~~~ 368 (434)
+|||+..+ ..+..|..||+.+|.||.+.. ....+..+|++.. .+..+..+|.++ |..+.
T Consensus 300 ~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~---~~~~~~~~p~~~~--~~~~~a~~G~~~~~a~~~g~~~~ 364 (455)
T 2yqu_A 300 IGDVVRGP----------MLAHKASEEGIAAVEHMVRGF---GHVDYQAIPSVVY--THPEIAAVGYTEEELKAQGIPYK 364 (455)
T ss_dssp CGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC---CCCCGGGCCEEEC--SSSEEEEEECCHHHHHHHTCCEE
T ss_pred EecCCCCc----------cCHHHHHHhHHHHHHHHcCCC---ccCCCCCCCEEEE--cCCceEEEECCHHHHHHcCCCEE
Confidence 99999754 467789999999999999742 1234555675444 445556667653 32233
Q ss_pred EcCCC-----c---ccCCCcEEEEEEe--CCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 369 FGDND-----L---ASATHKFGTYWIK--DGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 369 ~~~~~-----~---~~~~~~~~~~~~~--~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.+..+ + ......|+|++++ +|+|+|++++|+.+.++ +.++.+|++++|++|+..+..+.++|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e 439 (455)
T 2yqu_A 365 VGKFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSE 439 (455)
T ss_dssp EEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHH
T ss_pred EEEEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence 22111 1 0235678998884 89999999999998885 9999999999999988877666666654
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=370.16 Aligned_cols=398 Identities=19% Similarity=0.204 Sum_probs=277.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC------CCCc------cCccccCCC-------------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY------ERPA------LSKAYLFPE------------- 58 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~------~~~~------~~~~~~~~~------------- 58 (434)
++|||+|||||+||++||..|++.|.+ |+|||+.+..++ ...+ .++.++...
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~~G~~---V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g 81 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQLGKK---VAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYG 81 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999987 999998432211 1111 111111000
Q ss_pred -CCC--CCCCcccccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecCCCcc
Q 013914 59 -GTA--RLPGFHVCVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATGSTVL 127 (434)
Q Consensus 59 -~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG~~~~ 127 (434)
... ....+...... .........++..+++++.+ .+..++.....+...++ .++.||+||||||++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 160 (488)
T 3dgz_A 82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPR 160 (488)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEEC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCC
Confidence 000 00000000000 00001122345578999887 55555544444555565 47999999999999998
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHH
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADI 207 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~ 207 (434)
.|+. ++|.+. ..+ +..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+ +++. +++++
T Consensus 161 ~p~~--i~G~~~-~~~---~~~~~~~~----~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~-~d~~~ 227 (488)
T 3dgz_A 161 YPTQ--VKGALE-YGI---TSDDIFWL----K-ESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI-PLRG-FDQQM 227 (488)
T ss_dssp CCSS--CBTHHH-HCB---CHHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTT-SCHHH
T ss_pred CCCC--CCCccc-ccC---cHHHHHhh----h-hcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc-cccc-CCHHH
Confidence 8761 355321 111 33333222 1 157899999999999999999999999999999864 5554 79999
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECCEEEEcccCccChhhh---hcccccc--CC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEADIVVVGVGGRPLISLF---KGQVAEN--KG 277 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~---~~~~~~~--~g 277 (434)
.+.+.+.+++.||++++++.+.++...+++.+ .+.+.+ |+ ++++|.|++|+|++|+++++ ..++..+ +|
T Consensus 228 ~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G 306 (488)
T 3dgz_A 228 SSLVTEHMESHGTQFLKGCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQ 306 (488)
T ss_dssp HHHHHHHHHHTTCEEEETEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSC
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCC
Confidence 99999999999999999999999987444433 344433 54 47899999999999999874 3356653 68
Q ss_pred cEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeE
Q 013914 278 GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQ 357 (434)
Q Consensus 278 ~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 357 (434)
+|.||+++||++|+|||+|||+.... .++..|..||+.||.||++.... ...|..+|+++++.+++ .
T Consensus 307 ~i~vd~~~~t~~~~IyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~~p~~~~~~p~~--a 373 (488)
T 3dgz_A 307 KIIVDAQEATSVPHIYAIGDVAEGRP---------ELTPTAIKAGKLLAQRLFGKSST--LMDYSNVPTTVFTPLEY--G 373 (488)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBTTCC---------CCHHHHHHHHHHHHHHHHSCCCC--CCCCTTCCEEECSSSEE--E
T ss_pred eEeECCCCccCCCCEEEeEEecCCCC---------cchhHHHHHHHHHHHHHcCCCCc--cCCCCCCCEEEECCCCe--E
Confidence 89999999999999999999985321 46778999999999999976432 25677788877766554 4
Q ss_pred EeecCCC--------CEEEEc--CCCc-c------cCCCcEEEEEEe---CCEEEEEEEecCCHHHH-HHHHHHHHcCCC
Q 013914 358 FYGDNVG--------DTVLFG--DNDL-A------SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAIAKVARVQPS 416 (434)
Q Consensus 358 ~~g~~~~--------~~~~~~--~~~~-~------~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~ 416 (434)
.+|+++. ..+... ...+ . ..+.+|+|++++ +++|||+|++|+++.++ +.++.||++++|
T Consensus 374 ~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t 453 (488)
T 3dgz_A 374 CVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGAS 453 (488)
T ss_dssp EEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCB
T ss_pred EEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence 5576642 111111 1111 0 125789998874 59999999999999885 999999999999
Q ss_pred CCChhhhhccCCCccc
Q 013914 417 VESLDVLKNEGLSFAS 432 (434)
Q Consensus 417 ~~~~~~l~~~~~~~~~ 432 (434)
++||..+.-+.+++++
T Consensus 454 ~~~l~~~~~~hPt~~e 469 (488)
T 3dgz_A 454 YAQVMQTVGIHPTCSE 469 (488)
T ss_dssp HHHHHTSCCCSSCSTH
T ss_pred HHHHhccccCCCChHH
Confidence 9988877666666654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=355.16 Aligned_cols=389 Identities=21% Similarity=0.220 Sum_probs=276.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCC---------CC---CCCC----
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE---------GT---ARLP---- 64 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~---------~~---~~~~---- 64 (434)
.++||+|||||+||++||..|++.|.+ |+|||++...+ ...|.+++.++... .. ..++
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---V~lie~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEccCCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 358999999999999999999999886 99999954211 00111122211000 00 0010
Q ss_pred Cccc--ccCC------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCC
Q 013914 65 GFHV--CVGS------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEG 136 (434)
Q Consensus 65 ~~~~--~~~~------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g 136 (434)
.+.+ .... ........++++.+++++.++.+. ++ .+++.+.+ .++.||+||+|||++|+.|+. ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~-~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~--~~- 153 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVEVDG-QRIQCEHLLLATGSSSVELPM--LP- 153 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEEETT-EEEECSEEEECCCEEECCBTT--BC-
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEE-cc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCC--CC-
Confidence 0000 0000 000001245567899999986544 43 56777765 779999999999999987653 33
Q ss_pred CCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHH
Q 013914 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216 (434)
Q Consensus 137 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~ 216 (434)
.+ ..++ +..++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.++
T Consensus 154 ~~-~~v~---~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~ 223 (458)
T 1lvl_A 154 LG-GPVI---SSTEALAPK-----ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLK 223 (458)
T ss_dssp CB-TTEE---CHHHHTCCS-----SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHH
T ss_pred cc-CcEe---cHHHHhhhh-----ccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccc-cCHHHHHHHHHHHH
Confidence 22 1344 344433221 14789999999999999999999999999999999999984 89999999999999
Q ss_pred hcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhh---hccccc-cCCcEEeCCCCCCCCC
Q 013914 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLF---KGQVAE-NKGGIETDDFFKTSAD 290 (434)
Q Consensus 217 ~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~ 290 (434)
+.||+++++++|++++. ++ ..+...+| +++++|.|++|+|++|+++++ ..++.. ++ +|.||+++||+.|
T Consensus 224 ~~gv~i~~~~~v~~i~~--~~--v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~ 298 (458)
T 1lvl_A 224 KLGIALHLGHSVEGYEN--GC--LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMH 298 (458)
T ss_dssp HHTCEEETTCEEEEEET--TE--EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSST
T ss_pred HCCCEEEECCEEEEEEe--CC--EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCC
Confidence 99999999999999975 22 34444456 689999999999999999853 335555 34 9999999999999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEeecCC------C
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNV------G 364 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~------~ 364 (434)
+|||+|||+..+ ..+..|..||+.+|.||.+.. ....+..+|++.. .+..+..+|.++ |
T Consensus 299 ~Iya~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~--~~p~~a~vG~~e~~a~~~g 363 (458)
T 1lvl_A 299 NVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA---RRFEPAAIAAVCF--TDPEVVVVGKTPEQASQQG 363 (458)
T ss_dssp TEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC---CCCCCSCCCEEEC--SSSEEEEEECCHHHHHHTT
T ss_pred CEEEeeccCCCc----------ccHHHHHHHHHHHHHHhcCCC---ccCCCCCCCEEEE--CCCCeEEEeCCHHHHHHcC
Confidence 999999999854 467789999999999999742 1234556676544 444556667653 3
Q ss_pred CEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 365 DTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 365 ~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
..+..+..+ +. ....+|+|+++ ++++|+|++++|+.+.++ +.++.+|++++|++|+..+..+.++|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 442 (458)
T 1lvl_A 364 LDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGE 442 (458)
T ss_dssp CCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTH
T ss_pred CCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHH
Confidence 223222111 11 23567899888 579999999999998884 9999999999999988776666666543
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=363.19 Aligned_cols=396 Identities=17% Similarity=0.188 Sum_probs=272.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC------CCCc------cCccccCCC-----------CC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY------ERPA------LSKAYLFPE-----------GT 60 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~------~~~~------~~~~~~~~~-----------~~ 60 (434)
.++||+|||||+||++||.+|++.|.+ |+|||+....+. ...+ .++.+.... ..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~---v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAK---TAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCe---EEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 468999999999999999999999987 999997422111 0000 011000000 00
Q ss_pred CCCCCcccccCCCCCCC---------------ChhhHhhcCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecC
Q 013914 61 ARLPGFHVCVGSGGERL---------------LPEWYKEKGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG 123 (434)
Q Consensus 61 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG 123 (434)
...+... ... .... ....+...+++++.+ ....++.....+...+| .++.||+||||||
T Consensus 183 ~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtG 258 (598)
T 2x8g_A 183 WSLDRSK--ISH-NWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATG 258 (598)
T ss_dssp CCCCGGG--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCC
T ss_pred ccccCCc--Ccc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCC
Confidence 0000000 000 0000 011234568999886 55556654444444556 4689999999999
Q ss_pred CCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC
Q 013914 124 STVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203 (434)
Q Consensus 124 ~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~ 203 (434)
++|+.|+ ++|.+. ...+ ..++..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++. .+++. +
T Consensus 259 s~p~~p~---i~G~~~-~~~~---~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~-~ 324 (598)
T 2x8g_A 259 ERPKYPE---IPGAVE-YGIT---SDDLFSL----P-YFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRG-F 324 (598)
T ss_dssp EEECCCS---STTHHH-HCEE---HHHHTTC----S-SCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTT-S
T ss_pred CCCCCCC---CCCccc-ceEc---HHHHhhC----c-cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCc-C
Confidence 9998877 566431 1222 2222111 1 24789999999999999999999999999999988 56665 7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-----CC---CcE-EEEEeCCCcEEE--CCEEEEcccCccChhhh---h
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN-----AD---GEV-KEVKLKDGRTLE--ADIVVVGVGGRPLISLF---K 269 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-----~~---g~v-~~v~~~~g~~~~--~D~vi~a~G~~p~~~~~---~ 269 (434)
++++.+.+.+.+++.||++++++.+.++... .+ +.+ ..+.+.+|++++ +|.|++|+|++||++++ .
T Consensus 325 d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~ 404 (598)
T 2x8g_A 325 DQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCET 404 (598)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGG
T ss_pred CHHHHHHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchh
Confidence 9999999999999999999999988888542 12 332 223456787665 99999999999999864 3
Q ss_pred ccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeE
Q 013914 270 GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFY 348 (434)
Q Consensus 270 ~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~ 348 (434)
.++.. ++|+|.||+++||++|+|||+|||+.... ..+..|..||+.||.||++.... ...|..+|+.+
T Consensus 405 ~gl~~~~~G~i~vd~~~~ts~~~VyA~GD~~~~~~---------~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~p~~~ 473 (598)
T 2x8g_A 405 VGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKP---------QLTPVAIQAGRYLARRLFAGATE--LTDYSNVATTV 473 (598)
T ss_dssp GCCCBCTTSCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCCCC--CCCCTTCCEEE
T ss_pred cCceECCCCcEEeCCCCcCCCCCEEEEeeecCCCC---------ccHHHHHHhHHHHHHHHhcCCCc--ccCCCCCcEEE
Confidence 35666 56889999999999999999999965321 46788999999999999975421 25677788777
Q ss_pred EeccCceeEEeecCC-------CC-EEEEcC--CC---cc----cCCCcEEEEEEe---CCEEEEEEEecCCHHHH-HHH
Q 013914 349 SRAFDLSWQFYGDNV-------GD-TVLFGD--ND---LA----SATHKFGTYWIK---DGKVVGVFLESGTPEEN-KAI 407 (434)
Q Consensus 349 ~~~~~~~~~~~g~~~-------~~-~~~~~~--~~---~~----~~~~~~~~~~~~---~~~ilG~~~~g~~~~~~-~~~ 407 (434)
++.+++.. +|+++ +. .+.... .. .. .....|+|++++ +++|||+|++|+++.++ +.+
T Consensus 474 ~~~~~~a~--vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~ 551 (598)
T 2x8g_A 474 FTPLEYGA--CGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGY 551 (598)
T ss_dssp CSSSCEEE--EECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHH
T ss_pred ECCCceEE--EeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence 66555554 56553 21 111110 10 00 124678888774 79999999999998885 999
Q ss_pred HHHHHcCCCCCChhhhhccCCCcccc
Q 013914 408 AKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 408 ~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
+.||++++|++|+..+.-+.+++.+.
T Consensus 552 ~~ai~~~~t~~~l~~~~~~hPt~~e~ 577 (598)
T 2x8g_A 552 AVAIKMGATKADFDRTIGIHPTCSET 577 (598)
T ss_dssp HHHHHTTCBHHHHHHSCCCSSCSGGG
T ss_pred HHHHHcCCCHHHHhhccccCCCHHHH
Confidence 99999999999888877777776653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=310.77 Aligned_cols=298 Identities=21% Similarity=0.236 Sum_probs=210.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChh
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|+...|||+||||||||++||.+|+++|++ |+|||++... ..++.......+|++....+.........
T Consensus 2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~---V~liE~~~~g--------G~~~~~~~i~~~p~~~~~~~~~~~~~~~~ 70 (312)
T 4gcm_A 2 MTEIDFDIAIIGAGPAGMTAAVYASRANLK---TVMIERGIPG--------GQMANTEEVENFPGFEMITGPDLSTKMFE 70 (312)
T ss_dssp --CCSEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTT--------GGGGGCSCBCCSTTCSSBCHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCC--------CeeecccccCCcCCccccchHHHHHHHHH
Confidence 555579999999999999999999999987 9999987421 11222222233343322111111112233
Q ss_pred hHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHh
Q 013914 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKA 160 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~ 160 (434)
...+.+..+..+..+...+.....+...++++++||++|||||++|+.|++++.+......++++...+.. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~--------~ 142 (312)
T 4gcm_A 71 HAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--------F 142 (312)
T ss_dssp HHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--------G
T ss_pred HHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCcc--------c
Confidence 44556777777767777777777777778889999999999999999888433322222345443222211 1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc--
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE-- 238 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~-- 238 (434)
.++++++|||+|++|+|+|..|.+.|.+||++++.+++++. . ....+.+++.++.......+......+...
T Consensus 143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (312)
T 4gcm_A 143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQ---R---ILQDRAFKNDKIDFIWSHTLKSINEKDGKVGS 216 (312)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSC---H---HHHHHHHHCTTEEEECSEEEEEEEEETTEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcc---h---hHHHHHHHhcCcceeeecceeeeecccccccc
Confidence 25799999999999999999999999999999999988763 1 122355777888888887776665522111
Q ss_pred EEEEEeC--CCcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccH
Q 013914 239 VKEVKLK--DGRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 315 (434)
Q Consensus 239 v~~v~~~--~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~ 315 (434)
....... ++..+++|.|++++|.+|+..++.. ++..++|+|.||++||||+|||||+|||++.+. .++
T Consensus 217 ~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~---------~~~ 287 (312)
T 4gcm_A 217 VTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGL---------RQI 287 (312)
T ss_dssp EEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSC---------CSH
T ss_pred ceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcc---------hHH
Confidence 1111222 3357899999999999999998865 444578999999999999999999999997432 467
Q ss_pred HHHHHHHHHHHHHHhcc
Q 013914 316 DHARKSAEQAVKTIMAT 332 (434)
Q Consensus 316 ~~A~~~g~~aa~~i~~~ 332 (434)
..|..+|+.||.+|...
T Consensus 288 ~~A~~~G~~AA~~i~~~ 304 (312)
T 4gcm_A 288 VTATGDGSIAAQSAAEY 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999999754
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=330.90 Aligned_cols=297 Identities=20% Similarity=0.291 Sum_probs=229.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH--
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-- 82 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 82 (434)
+++|||||||+||+++|..|++.+++ |+|||+++++.|. |.+..... ..+..... ........
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~---VtLId~~~~~~~~-PlL~~va~-----G~l~~~~i------~~p~~~~~~~ 106 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYN---VSIISPRSYFLFT-PLLPSAPV-----GTVDEKSI------IEPIVNFALK 106 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCE---EEEEESSSEEECG-GGGGGTTT-----TSSCGGGG------EEEHHHHHTT
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCc---EEEECCCCCcccc-cchhHHhh-----ccccHHHh------hhhHHHHHHh
Confidence 56899999999999999999876654 9999999875543 33211110 00100000 00111222
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEcc--------------------CCcEEEcceEEEecCCCcccccCCCCCCCCCCCe
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSA--------------------TGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI 142 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~--------------------~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v 142 (434)
.+.+++++.+ +++.||++.++|.+. ++.++.||+||||||+.|+.++ +||.. .+.
T Consensus 107 ~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~---ipG~~-e~a 181 (502)
T 4g6h_A 107 KKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG---IPGVT-DYG 181 (502)
T ss_dssp CSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT---CTTHH-HHC
T ss_pred hcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC---ccCcc-ccc
Confidence 2347899886 899999999988753 3568999999999999998777 57754 456
Q ss_pred EEecCHHHHHHHHHHHHhC---------------CCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEc
Q 013914 143 FYLREIDDADKLVEAIKAK---------------KNGKAVVVGGGYIGLELSAALKINN--------------IDVSMVY 193 (434)
Q Consensus 143 ~~~~~~~~~~~~~~~l~~~---------------~~~~v~ViG~g~~~~e~a~~l~~~g--------------~~v~lv~ 193 (434)
+.+++..++..+++.+... ...+++|||+|++|+|+|..|.+.+ .+|++++
T Consensus 182 ~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve 261 (502)
T 4g6h_A 182 HFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVE 261 (502)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 7889999998887765321 1247999999999999999987643 6899999
Q ss_pred cCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc----EEECCEEEEcccCccChhh--
Q 013914 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLISL-- 267 (434)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~----~~~~D~vi~a~G~~p~~~~-- 267 (434)
+.+++++. +++++.+.+.+.|++.||+++++++|++++. ++........||+ ++++|+||||+|.+|+...
T Consensus 262 ~~~~il~~-~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~ 338 (502)
T 4g6h_A 262 ALPIVLNM-FEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITD 338 (502)
T ss_dssp SSSSSSTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHH
T ss_pred cccccccC-CCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHh
Confidence 99999986 8999999999999999999999999999965 5555556667774 6999999999999998532
Q ss_pred -h-hccccc-cCCcEEeCCCCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 268 -F-KGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 268 -~-~~~~~~-~~g~i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
. ..+... .+|+|.||++||+ ++|||||+|||+..+.+ +.++.|.+||+++|+||.+.
T Consensus 339 l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p--------~~a~~A~qqg~~~A~ni~~~ 399 (502)
T 4g6h_A 339 LFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLP--------PTAQVAHQEAEYLAKNFDKM 399 (502)
T ss_dssp HHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSC--------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCC--------CchHHHHHHHHHHHHHHHHH
Confidence 2 223333 5789999999999 89999999999987655 78889999999999999653
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=306.43 Aligned_cols=303 Identities=17% Similarity=0.205 Sum_probs=222.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCC-CCCCCCcccccCCCCCCCCh
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEG-TARLPGFHVCVGSGGERLLP 79 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (434)
||++++||+|||||+||+++|..|++.|++ |+|||+++..... +. ...+.. ....+.+...........+.
T Consensus 1 m~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~ 72 (335)
T 2zbw_A 1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLS---FRFVDPLPEPGGQ--LT---ALYPEKYIYDVAGFPKVYAKDLVKGLV 72 (335)
T ss_dssp --CCEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSSCHH--HH---HTCTTSEECCSTTCSSEEHHHHHHHHH
T ss_pred CCCCcCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCe--ee---ccCCCceeeccCCCCCCCHHHHHHHHH
Confidence 777789999999999999999999999886 9999998653210 00 000000 01111111000000011223
Q ss_pred hhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCC---cccccCCCCCCCC---CCCeEE-ecCHHH
Q 013914 80 EWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGST---VLRLTDFGVEGAD---AKNIFY-LREIDD 150 (434)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~---~~~~~~~~~~g~~---~~~v~~-~~~~~~ 150 (434)
+.+++.+++++.++.|..++.+.. .+.+.++.++.||+||+|||+. |..++ ++|.+ ...+++ +.+..
T Consensus 73 ~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~---i~g~~~~~~~~~~~~~~~~~- 148 (335)
T 2zbw_A 73 EQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIG---APGEREFEGRGVYYAVKSKA- 148 (335)
T ss_dssp HHHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCC---CTTTTTTBTTTEESSCSCGG-
T ss_pred HHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCC---CCChhhccCcEEEEecCchh-
Confidence 445567899988889999887654 3566677789999999999995 55444 45542 123432 12211
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+ .++..+.+.+.+++.||++++++.+.+
T Consensus 149 ---------~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~~~~v~~ 216 (335)
T 2zbw_A 149 ---------EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLTPYELRR 216 (335)
T ss_dssp ---------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred ---------hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEecCCccee
Confidence 12578999999999999999999999999999999988765 467788888999999999999999999
Q ss_pred EEecCCCcEEEEEeC---CC--cEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 231 FTTNADGEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 231 i~~~~~g~v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
+.. ++.+..+.+. +| +++++|.|++|+|++|+.++++. ++..++|+|.||+++||++|+|||+|||+..+..
T Consensus 217 i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~ 294 (335)
T 2zbw_A 217 VEG--DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294 (335)
T ss_dssp EEE--SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC
T ss_pred Ecc--CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc
Confidence 987 4555566665 67 57999999999999999887754 5555678999999999999999999999986431
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccCCCC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
...+..|..+|+.+|+||.+...+.
T Consensus 295 -------~~~~~~A~~~g~~aa~~i~~~l~~~ 319 (335)
T 2zbw_A 295 -------LPLIVLGFGEAAIAANHAAAYANPA 319 (335)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -------hhhhhhhHHHHHHHHHHHHHHhhhh
Confidence 1678889999999999998876543
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-40 Score=304.81 Aligned_cols=297 Identities=20% Similarity=0.212 Sum_probs=207.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC--CCCccCccccCCCCCCCCCCcccccC-CCCCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY--ERPALSKAYLFPEGTARLPGFHVCVG-SGGERLL 78 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (434)
|+++|||+||||||||++||.+|+++|++ |+|||++..... ..+..++.. ..+++++..... .......
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~---v~liE~~~~gg~~~~G~~~~~~~-----i~~~~g~~~~i~~~~l~~~~ 72 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLK---PVMYEGFMAGGVAAGGQLTTTTI-----IENFPGFPNGIDGNELMMNM 72 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSGGGCCTTCGGGGSSE-----ECCSTTCTTCEEHHHHHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCcccCCCcCChHH-----hhhccCCcccCCHHHHHHHH
Confidence 45679999999999999999999999987 999999754211 111111111 122333221100 0011223
Q ss_pred hhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCCC---CCeEEecCHHHHHH
Q 013914 79 PEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADK 153 (434)
Q Consensus 79 ~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~ 153 (434)
...+++.++.+... .+.......+ .+.+.++.++.||++|||||++|+.|+ +||.+. ..+....... .
T Consensus 73 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~---ipG~~~~~~~~~~~~~~~~---~ 145 (314)
T 4a5l_A 73 RTQSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMH---VPGEDKYWQNGVSACAICD---G 145 (314)
T ss_dssp HHHHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCC---CTTHHHHBTTTEESCHHHH---T
T ss_pred HHHHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccC---CCccccccccceeeehhhh---h
Confidence 34455678888775 5555554443 456677789999999999999998887 465432 2232222111 1
Q ss_pred HHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 154 ~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
......+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ... ...+.....+++.+....+.++..
T Consensus 146 ---~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~i~~ 216 (314)
T 4a5l_A 146 ---AVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIWNSELVELEG 216 (314)
T ss_dssp ---TSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEE
T ss_pred ---hhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEeeeeeEEEEe
Confidence 11112578999999999999999999999999999998776543 332 234456677889999988888876
Q ss_pred cCCCcEEEEEe-----CCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCc
Q 013914 234 NADGEVKEVKL-----KDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 234 ~~~g~v~~v~~-----~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 308 (434)
. +.....+.+ .+++++++|.|++++|++||++++...+...++++.||+++|||+|||||+|||++.+.
T Consensus 217 ~-~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~----- 290 (314)
T 4a5l_A 217 D-GDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGPKTSVDGVFACGDVCDRVY----- 290 (314)
T ss_dssp S-SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCBTTBCSSTTEEECSTTTCSSC-----
T ss_pred e-eeccceeEEeecccccceeeccccceEecccccChhHhcccceEcCCeeEeCCCCccCCCCEEEEEeccCCcc-----
Confidence 3 333333333 34568999999999999999999987776644555699999999999999999998654
Q ss_pred ceecccHHHHHHHHHHHHHHHhcc
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.++..|..+|+.||.++...
T Consensus 291 ----~~~~~A~~~G~~AA~~~~~y 310 (314)
T 4a5l_A 291 ----RQAIVAAGSGCMAALSCEKW 310 (314)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999988653
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=301.60 Aligned_cols=299 Identities=19% Similarity=0.200 Sum_probs=223.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCCh
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLP 79 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (434)
|||+++||+|||||+||+++|..|++.|++ |+|||+..... .+.........+.+..... ........
T Consensus 1 ~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (320)
T 1trb_A 1 GTTKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMH 69 (320)
T ss_dssp CCEEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHH
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEccCCCCc--------eEecchhhhhCCCCCCCCCHHHHHHHHH
Confidence 456679999999999999999999999887 99999753211 0111111112222210000 00011233
Q ss_pred hhHhhcCcEEEcCCeeEEEECCCCEEE-ccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHH
Q 013914 80 EWYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLV 155 (434)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~ 155 (434)
..+.+.+++++.+ .+..++.+.+.+. +.++.++.||+||+|||+.|..|+ +++.+ ...++++....+.
T Consensus 70 ~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~~---- 141 (320)
T 1trb_A 70 EHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLG---LPSEEAFKGRGVSACATSDGF---- 141 (320)
T ss_dssp HHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCC---CHHHHHTBTTTEESCHHHHGG----
T ss_pred HHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCC---CCChHHhCCceeEecccCCcc----
Confidence 4556679999998 4899988766544 566778999999999999887776 44432 2345443332221
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
+ ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++.+.+.+.+.+++.||++++++++.++.. +
T Consensus 142 --~--~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~-~ 213 (320)
T 1trb_A 142 --F--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNIILHTNRTLEEVTG-D 213 (320)
T ss_dssp --G--GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSEEEECSCEEEEEEE-C
T ss_pred --c--cCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhcccCCeEEEcCceeEEEEc-C
Confidence 1 2578999999999999999999999999999999887653 678888888999999999999999999987 3
Q ss_pred CCcEEEEEeCC----C--cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCC-----CCCCCcEEEeccccccccc
Q 013914 236 DGEVKEVKLKD----G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFF-----KTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 236 ~g~v~~v~~~~----g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~-----~t~~~~iya~GD~~~~~~~ 304 (434)
++.+..+.+.+ | +++++|.|++|+|++|++++++.++..++|+|.||+++ +|++|+|||+|||+..+.
T Consensus 214 ~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~- 292 (320)
T 1trb_A 214 QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY- 292 (320)
T ss_dssp SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSS-
T ss_pred CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcccccccCceEEECCCcccccccCCCCCEEEcccccCCcc-
Confidence 44666677654 4 57999999999999999998876665567899999997 889999999999998642
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
..+..|..+|+.||.+|...+.+
T Consensus 293 --------~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 293 --------RQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred --------hhhhhhhccHHHHHHHHHHHHHh
Confidence 46788999999999999876644
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=301.49 Aligned_cols=304 Identities=21% Similarity=0.296 Sum_probs=220.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCC-CCCCCCCcccccCCCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPE-GTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
++++||+|||||++|+++|..|++.|++ |+|||+++..... + . .+.+. .....+.+...........+.+.
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gg~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNIS---CRIIESMPQLGGQ--L--A-ALYPEKHIYDVAGFPEVPAIDLVESLWAQ 83 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--H--H-HTCTTSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCc--c--c-ccCCCcccccCCCCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999999887 9999998653210 0 0 00000 00111111100000001122344
Q ss_pred HhhcCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCCCcccccCCCCCC-CC---CCCeEEe-cCHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLRLTDFGVEG-AD---AKNIFYL-REIDDADK 153 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g-~~---~~~v~~~-~~~~~~~~ 153 (434)
+++.+++++.++.|+.++...+ .+.+.++.++.||+||+|||+.+..|..++++| .+ ...+++. .+..
T Consensus 84 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~---- 159 (360)
T 3ab1_A 84 AERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVE---- 159 (360)
T ss_dssp HHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGG----
T ss_pred HHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHH----
Confidence 5567899999889999987654 577777878999999999999433332222455 22 2234322 2221
Q ss_pred HHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 154 LVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 154 ~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+. +...+.+.+.+++.||++++++++.++..
T Consensus 160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~~~~v~~i~~ 230 (360)
T 3ab1_A 160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYLETEVASIEE 230 (360)
T ss_dssp ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEESSEEEEEEEE
T ss_pred ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEcCcCHHHhcc
Confidence 125789999999999999999999999999999999887652 45667788888999999999999999987
Q ss_pred cCCCcEEEEEeC--CC--cEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccccccCc
Q 013914 234 NADGEVKEVKLK--DG--RTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 234 ~~~g~v~~v~~~--~g--~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 308 (434)
+++++..+.+. +| +++++|.||+|+|++|+.++++. ++..++|+|.||+++||++|+|||+|||+..+..
T Consensus 231 -~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---- 305 (360)
T 3ab1_A 231 -SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK---- 305 (360)
T ss_dssp -ETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC----
T ss_pred -CCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc----
Confidence 34555566664 77 57999999999999999987754 4555679999999999999999999999986431
Q ss_pred ceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
..++..|..||+.||++|.+...+
T Consensus 306 ---~~~~~~A~~~g~~aa~~i~~~l~~ 329 (360)
T 3ab1_A 306 ---LKIIQTGLSEATMAVRHSLSYIKP 329 (360)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHSC
T ss_pred ---cceeehhHHHHHHHHHHHHhhcCC
Confidence 167888999999999999877644
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=294.52 Aligned_cols=292 Identities=21% Similarity=0.257 Sum_probs=213.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (434)
+++||+|||||+||+++|..|++.|++ |+|||++.... . +.........+++.... .......+.+.+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg---~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQLS---TLILEKGMPGG---Q-----IAWSEEVENFPGFPEPIAGMELAQRMHQQA 75 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCTTG---G-----GGGCSCBCCSTTCSSCBCHHHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCCc---EEEEeCCCCCc---c-----cccccccccCCCCCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999887 99999983211 0 00000111112211000 000011234455
Q ss_pred hhcCcEEEcCCeeEEEECC--CC---EEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHH
Q 013914 83 KEKGIELILSTEIVRADIA--SK---TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKL 154 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~--~~---~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~ 154 (434)
++.+++++.+ .+..++.+ .+ .+.+.++.++.||++|+|||+.|+.|+ +++.+ ...++++......
T Consensus 76 ~~~gv~~~~~-~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~--- 148 (325)
T 2q7v_A 76 EKFGAKVEMD-EVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLG---IPGEDNFWGKGVSTCATCDGF--- 148 (325)
T ss_dssp HHTTCEEEEC-CEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCC---CTTTTTTBTTTEESCHHHHGG---
T ss_pred HHcCCEEEee-eEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCC---CCChhhccCceEEEeccCCHH---
Confidence 6779999884 89988876 43 566777888999999999999988776 45543 2344433322211
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEec
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN 234 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~ 234 (434)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++.+. .+.+++.||+++++++++++..
T Consensus 149 -----~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~---~~l~~~~gv~i~~~~~v~~i~~- 216 (325)
T 2q7v_A 149 -----FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVAQ---ARAFANPKMKFIWDTAVEEIQG- 216 (325)
T ss_dssp -----GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHHH---HHHHTCTTEEEECSEEEEEEEE-
T ss_pred -----HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHHH---HHHHhcCCceEecCCceEEEcc-
Confidence 11578999999999999999999999999999999887643 44332 2333456999999999999987
Q ss_pred CCCcEEEEEeC---CCc--EEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCc
Q 013914 235 ADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 235 ~~g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 308 (434)
++.+..+.+. +|+ ++++|.|++|+|++|++++++..+.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 217 -~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----- 290 (325)
T 2q7v_A 217 -ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY----- 290 (325)
T ss_dssp -SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC-----
T ss_pred -CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCCccCCCCEEEeecccCccH-----
Confidence 4555566664 675 78999999999999999888655544 57899999999999999999999998632
Q ss_pred ceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
..+..|..||+.||.||.....+
T Consensus 291 ----~~~~~A~~~g~~aa~~i~~~l~~ 313 (325)
T 2q7v_A 291 ----RQLATSVGAGTRAAMMTERQLAA 313 (325)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999876543
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=294.18 Aligned_cols=291 Identities=23% Similarity=0.259 Sum_probs=212.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+|||||+||+++|..|++.|++ |+|||+...... +........++++...........+.+.++
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGFS---VAILDKAVAGGL--------TAEAPLVENYLGFKSIVGSELAKLFADHAA 83 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSTTGG--------GGGCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCcc--------ccccchhhhcCCCcccCHHHHHHHHHHHHH
Confidence 458999999999999999999999987 999999532110 000001111222100000000112334455
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++. ..+..++.+.+ .+.+ ++.++.||++|+|||+.|+.|+ +++.+ ...++........
T Consensus 84 ~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~------- 151 (319)
T 3cty_A 84 NYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHKHLG---VKGESEYFGKGTSYCSTCDGY------- 151 (319)
T ss_dssp TTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEECCCC---CBTTTTTBTTTEESCHHHHGG-------
T ss_pred HcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcccCC---CCChHHhCCceEEEEEecchh-------
Confidence 67899988 58999887666 4544 5568999999999999888776 45543 2345433322211
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. ++. +.+.+++.||++++++++.++.. ++++
T Consensus 152 -~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~~~~v~~i~~-~~~~ 222 (319)
T 3cty_A 152 -LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIMNAQVTEIVG-DGKK 222 (319)
T ss_dssp -GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEECSEEEEEEEE-SSSS
T ss_pred -hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEcCCeEEEEec-CCce
Confidence 11578999999999999999999999999999999877643 343 44556689999999999999987 3444
Q ss_pred EEEEEeC---CCc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 239 VKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 239 v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
+..+.+. +|+ ++++|.||+|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 223 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------- 294 (319)
T 3cty_A 223 VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF-------- 294 (319)
T ss_dssp EEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC--------
T ss_pred EEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch--------
Confidence 5566664 675 6899999999999999988764 4655 56899999999999999999999998632
Q ss_pred cccHHHHHHHHHHHHHHHhccCCC
Q 013914 312 VEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
..+..|..||+.||.+|.....+
T Consensus 295 -~~~~~A~~~g~~aa~~i~~~l~~ 317 (319)
T 3cty_A 295 -AQIASAVGDGCKAALSLYSDSIS 317 (319)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred -hhHHHHHHHHHHHHHHHHHHhhc
Confidence 56888999999999999876543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=293.47 Aligned_cols=293 Identities=20% Similarity=0.240 Sum_probs=212.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
++||+|||||+||+++|..|++.|.+ |+|||+.....+ ........++.............+.+.+++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~---v~li~~~~gG~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGGQI---------LDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTGGG---------GGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCcee---------ccccccccccCcCCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999999887 999986421000 000000011110000000001123345566
Q ss_pred cCcEEEcCCeeEEEECC-----CCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++.++++..++++ ...+.+.++.++.||++|+|||+.|..|+.++.+......++++.... ..
T Consensus 69 ~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~------~~-- 140 (310)
T 1fl2_A 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCD------GP-- 140 (310)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHH------GG--
T ss_pred cCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCc------Hh--
Confidence 79999999899999875 235777778789999999999999877764332222223454332111 11
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCc
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~ 238 (434)
...+++++|||+|++|+|+|..|.+.+.+|+++++.+.+. +++ .+.+.+++ .||+++++++++++.. ++++
T Consensus 141 ~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~~~~v~~i~~-~~~~ 212 (310)
T 1fl2_A 141 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIILNAQTTEVKG-DGSK 212 (310)
T ss_dssp GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEESSEEEEEEEE-SSSS
T ss_pred hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEecCCceEEEEc-CCCc
Confidence 1257899999999999999999999999999999988763 343 34455666 6999999999999987 3456
Q ss_pred EEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 239 VKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 239 v~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
+..+++.+ |+ ++++|.|++|+|++||++++...+.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 213 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------- 283 (310)
T 1fl2_A 213 VVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY--------- 283 (310)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS---------
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhccccccCCCcEEcCCCCccCCCCEEEeecccCCcc---------
Confidence 65666643 53 68999999999999999888655555 57899999999999999999999998653
Q ss_pred ccHHHHHHHHHHHHHHHhccCC
Q 013914 313 EHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
..+..|..+|+.||.+|.....
T Consensus 284 ~~~~~A~~~g~~aa~~i~~~l~ 305 (310)
T 1fl2_A 284 KQIIIATGEGAKASLSAFDYLI 305 (310)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhHHHHHHHHHHHHH
Confidence 4677899999999999987543
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=294.46 Aligned_cols=290 Identities=20% Similarity=0.222 Sum_probs=214.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
++||+|||||+||+++|..|++.|++ |+|||++ .... +........++.+...........+.+.+++
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~-~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLK---TLVIGET-PGGQ--------LTEAGIVDDYLGLIEIQASDMIKVFNKHIEK 82 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESS-TTGG--------GGGCCEECCSTTSTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCc---EEEEecc-CCCe--------ecccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999887 9999998 2110 1111111122222110000011223455566
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCCC---CCeEEecCHHHHHHHHHHHH
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDADKLVEAIK 159 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~~~~~~l~ 159 (434)
.+++++. ..|..++.+.+ .+.+.++.++.||+||+|||+.|+.|+ ++|.+. ..+++... .+. .
T Consensus 83 ~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~---i~g~~~~~~~~~~~~~~-~~~-------~ 150 (323)
T 3f8d_A 83 YEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLG---VPGEQEFAGRGISYCSV-ADA-------P 150 (323)
T ss_dssp TTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCC---CTTTTTTBTTTEESCHH-HHG-------G
T ss_pred cCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCC---CCchhhhcCCceEEecc-CCH-------h
Confidence 7899999 79999987754 466677788999999999999988777 455432 45543221 111 1
Q ss_pred hCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcE
Q 013914 160 AKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEV 239 (434)
Q Consensus 160 ~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v 239 (434)
...+++++|+|+|++++|+|..|.+.|.+|+++++.+.+++ ++. .+.+.+++.||+++++++++++.. ++.+
T Consensus 151 ~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~~~~v~~i~~--~~~~ 222 (323)
T 3f8d_A 151 LFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVLNSVVKEIKG--DKVV 222 (323)
T ss_dssp GGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEECSEEEEEEEE--SSSE
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEeCCEEEEEec--cCce
Confidence 12578999999999999999999999999999999988776 333 233444456999999999999987 4566
Q ss_pred EEEEeCC---Cc--EEECCEEEEcccCccChhhhhc-cccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 240 KEVKLKD---GR--TLEADIVVVGVGGRPLISLFKG-QVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 240 ~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~-~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
..+.+.+ |+ ++++|.|++|+|++|++++++. ++.. ++|+|.||+++||++|+|||+|||+..+. ..
T Consensus 223 ~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~ 295 (323)
T 3f8d_A 223 KQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GF 295 (323)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TC
T ss_pred eEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cc
Confidence 6677765 76 7999999999999999888754 5665 67999999999999999999999998631 11
Q ss_pred ccHHHHHHHHHHHHHHHhccC
Q 013914 313 EHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|+.||.+|....
T Consensus 296 ~~~~~A~~~g~~aa~~i~~~l 316 (323)
T 3f8d_A 296 RQVITAVAQGAVAATSAYRYV 316 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeehhhHHHHHHHHHHHHH
Confidence 678899999999999997654
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=291.64 Aligned_cols=290 Identities=19% Similarity=0.162 Sum_probs=211.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCChh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPE 80 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~v-ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (434)
++++||+|||||+||+++|..|++.|++ |+| +|++.... .+........+|++.... .......+.+
T Consensus 2 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~li~e~~~~gG--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (315)
T 3r9u_A 2 NAMLDVAIIGGGPAGLSAGLYATRGGLK---NVVMFEKGMPGG--------QITSSSEIENYPGVAQVMDGISFMAPWSE 70 (315)
T ss_dssp CSCEEEEEECCSHHHHHHHHHHHHHTCS---CEEEECSSSTTG--------GGGGCSCBCCSTTCCSCBCHHHHHHHHHH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCC---eEEEEeCCCCCc--------eeeeeceeccCCCCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999999987 888 99953211 011111112222221000 0001122344
Q ss_pred hHhhcCcEEEcCCeeEEEECCC--CEEE--c-cCCcEEEcceEEEecCCCcccccCCCCCCCCC---CCeEEecCHHHHH
Q 013914 81 WYKEKGIELILSTEIVRADIAS--KTLL--S-ATGLIFKYQILVIATGSTVLRLTDFGVEGADA---KNIFYLREIDDAD 152 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~--~~v~--~-~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~---~~v~~~~~~~~~~ 152 (434)
.+++.+++++.+ .+..+ .+. +.+. + .++ ++.||++|+|||+.|+.|+. +|.+. ..+++.......
T Consensus 71 ~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~---~g~~~~~~~~~~~~~~~~~~- 143 (315)
T 3r9u_A 71 QCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGF---KGEDEFFGKGVSTCATCDGF- 143 (315)
T ss_dssp HHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCC---BTTTTTBTTTEESCHHHHGG-
T ss_pred HHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCC---CChhhcCCCeEEeeeccccc-
Confidence 556679999998 88888 444 3333 3 344 89999999999999887774 55432 445543322211
Q ss_pred HHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 153 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 153 ~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
...+++++|+|+|++++|+|..|.+.+.+|+++++.+.+.. ++++ +.+.+++.||++++++++.++.
T Consensus 144 -------~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~---~~~~~~~~gv~~~~~~~v~~i~ 210 (315)
T 3r9u_A 144 -------FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APST---VEKVKKNEKIELITSASVDEVY 210 (315)
T ss_dssp -------GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHHH---HHHHHHCTTEEEECSCEEEEEE
T ss_pred -------ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHHH---HHHHHhcCCeEEEeCcEEEEEE
Confidence 11578999999999999999999999999999999887743 4433 3455678999999999999998
Q ss_pred ecCCCcEEEEEeC--CCc--EEECCEEEEcccCccChhhhhc-----cccc-cCCcEEeCCCCCCCCCcEEEeccccccc
Q 013914 233 TNADGEVKEVKLK--DGR--TLEADIVVVGVGGRPLISLFKG-----QVAE-NKGGIETDDFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 233 ~~~~g~v~~v~~~--~g~--~~~~D~vi~a~G~~p~~~~~~~-----~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~ 302 (434)
. +++++..+.+. +|+ ++++|.|++|+|++|+.++++. ++.. .+|+|.||+++||++|+|||+|||+...
T Consensus 211 ~-~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~ 289 (315)
T 3r9u_A 211 G-DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDA 289 (315)
T ss_dssp E-ETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTC
T ss_pred c-CCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCc
Confidence 7 34455566665 785 7899999999999999998876 4666 5689999999999999999999998643
Q ss_pred ccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 303 MKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 303 ~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
. +.+..|..+|+.||.+|....
T Consensus 290 ~---------~~~~~A~~~g~~aa~~i~~~l 311 (315)
T 3r9u_A 290 P---------KQVICAAGDGAVAALSAMAYI 311 (315)
T ss_dssp C---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred h---------hhhhhHHhhHHHHHHHHHHHH
Confidence 2 678899999999999997653
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=306.45 Aligned_cols=318 Identities=19% Similarity=0.180 Sum_probs=236.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||+||+++|.+|++.+. ..+|+|||+++.+.+. |. +......... .. ......+.+.+.
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~~-p~-~~~v~~g~~~--~~---------~~~~~~~~~~~~ 68 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYTC-YM-SNEVIGGDRE--LA---------SLRVGYDGLRAH 68 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEECS-TT-HHHHHHTSSC--GG---------GGEECSHHHHHT
T ss_pred CEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCCc-cC-HHHHhcCCCC--HH---------HHhhCHHHHHHC
Confidence 689999999999999999999874 4679999998753321 22 2111111100 00 011233456678
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCC-CCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGA-DAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
|++++.+ +|+.||++.+++.+.++.++.||+||+|||++++.+++++++.. ....++.+++.+++..+++.+......
T Consensus 69 gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (401)
T 3vrd_B 69 GIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDG 147 (401)
T ss_dssp TCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTT
T ss_pred CCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccC
Confidence 9999997 89999999999999999999999999999999988875333221 123456677888899998888876555
Q ss_pred cEEEECCCH-----------HHHHHHHHHHhCC--CeEEEEccCCccCC-ccCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 165 KAVVVGGGY-----------IGLELSAALKINN--IDVSMVYPEPWCMP-RLFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 165 ~v~ViG~g~-----------~~~e~a~~l~~~g--~~v~lv~~~~~~~~-~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
..+|++.+. .+++++..+.+.+ .+|++++..+.+.. ..+++.+.+.+.+.+++.||++++++++..
T Consensus 148 ~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~ 227 (401)
T 3vrd_B 148 GVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAV 227 (401)
T ss_dssp CEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCE
T ss_pred CcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEE
Confidence 555554332 3456666666655 78999998877643 124566677777778899999999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCCC-CC-CCCCcEEEecccccc-cccccC
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDF-FK-TSADDVYAVGDVATF-PMKLYR 307 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~-~~-t~~~~iya~GD~~~~-~~~~~~ 307 (434)
++.+.++ ..+++.+|+++++|++++++|.+|+..+.+.++..++|+|.||++ +| |++|||||+|||+.. +.+
T Consensus 228 v~~~~~~--~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~p--- 302 (401)
T 3vrd_B 228 VKTDTEA--MTVETSFGETFKAAVINLIPPQRAGKIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMP--- 302 (401)
T ss_dssp EEEETTT--TEEEETTSCEEECSEEEECCCEEECHHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSC---
T ss_pred EEecccc--eEEEcCCCcEEEeeEEEEecCcCCchhHhhccccccCCCEEECCCcceecCCCCEEEecccccCCCCC---
Confidence 9874444 468899999999999999999999866656677668899999987 66 699999999999864 323
Q ss_pred cceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeE
Q 013914 308 EMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFY 348 (434)
Q Consensus 308 ~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~ 348 (434)
++...|.+||+++|+||++...|+++.++.+..+++
T Consensus 303 -----k~a~~A~~qa~v~A~ni~~~l~G~~~~~~~y~~~~~ 338 (401)
T 3vrd_B 303 -----KSAYSANSQAKVAAAAVVALLKGEEPGTPSYLNTCY 338 (401)
T ss_dssp -----BSHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEE
T ss_pred -----chHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCeEE
Confidence 678889999999999999887776555555544443
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=292.16 Aligned_cols=288 Identities=19% Similarity=0.196 Sum_probs=211.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChhhHh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEWYK 83 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 83 (434)
+||+|||||++|+++|..|++.|. + |+|||++..... +........++++..... ......+.+.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~---v~lie~~~~gg~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 70 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKN---AVLFEKGMPGGQ--------ITGSSEIENYPGVKEVVSGLDFMQPWQEQCF 70 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSS---EEEECSSSTTCG--------GGGCSCBCCSTTCCSCBCHHHHHHHHHHHHH
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCc---EEEEcCCCCCcc--------cccccccccCCCCcccCCHHHHHHHHHHHHH
Confidence 799999999999999999999988 6 999999632111 000011111222110000 000112234455
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++. ..+..++.+.+ .+.+.++.++.||++|+|||+.|+.|+ ++|.+ ...++++...+..
T Consensus 71 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~~------- 139 (311)
T 2q0l_A 71 RFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTG---IKGESEYWGKGVSTCATCDGF------- 139 (311)
T ss_dssp TTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCC---CBTHHHHBTTTEESCHHHHGG-------
T ss_pred HcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCC---CCChhhccCCcEEEeecCChh-------
Confidence 67899988 68999987766 566677788999999999999988777 45532 2445544332221
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHH-hcCcEEEcCCeEEEEEecCCC
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA-NKGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~-~~GV~~~~~~~v~~i~~~~~g 237 (434)
...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+. .++.+ .+.+. +.||+++++++++++..+ ++
T Consensus 140 -~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~~----~~~l~~~~gv~v~~~~~v~~i~~~-~~ 210 (311)
T 2q0l_A 140 -FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPIT----LEHAKNNDKIEFLTPYVVEEIKGD-AS 210 (311)
T ss_dssp -GGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHHH----HHHHHTCTTEEEETTEEEEEEEEE-TT
T ss_pred -hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHHH----HHHHhhCCCeEEEeCCEEEEEECC-CC
Confidence 1157899999999999999999999999999999988763 34443 33344 579999999999999873 34
Q ss_pred cEEEEEeC---CCc--EEECCEEEEcccCccChhhhhcc-----ccc-cCCcEEeCCCCCCCCCcEEEeccccccccccc
Q 013914 238 EVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFKGQ-----VAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 238 ~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~~~-----~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~ 306 (434)
.+..+.+. +|+ ++++|.|++|+|++|++++++.. +.. ++|+|.||+++||++|+|||+|||+..+.
T Consensus 211 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--- 287 (311)
T 2q0l_A 211 GVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP--- 287 (311)
T ss_dssp EEEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---
T ss_pred cEeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch---
Confidence 44456665 675 78999999999999999888653 555 57899999999999999999999998632
Q ss_pred CcceecccHHHHHHHHHHHHHHHhccC
Q 013914 307 REMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..||+.||.||....
T Consensus 288 ------~~~~~A~~~g~~aa~~i~~~l 308 (311)
T 2q0l_A 288 ------KQVVCAASDGATAALSVISYL 308 (311)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhHHHHHHHHHHHH
Confidence 578889999999999997643
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=298.67 Aligned_cols=299 Identities=18% Similarity=0.224 Sum_probs=217.7
Q ss_pred CCC--CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCC
Q 013914 1 MAE--KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL 78 (434)
Q Consensus 1 M~~--~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
||+ +++||+|||||+||+++|..|++.|++ |+|||+++..... + ............+++...........+
T Consensus 1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~gG~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (332)
T 3lzw_A 1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQAS---VKIIESLPQLGGQ--L--SALYPEKYIYDVAGFPKIRAQELINNL 73 (332)
T ss_dssp CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHH--H--HHHCTTSEECCSTTCSSEEHHHHHHHH
T ss_pred CCCCCccceEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCCCce--e--hhcCCCceEeccCCCCCCCHHHHHHHH
Confidence 553 358999999999999999999999886 9999998653200 0 000000001112222110000011223
Q ss_pred hhhHhhcCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCC---CcccccCCCCCCCCC---CCeEEecCHH
Q 013914 79 PEWYKEKGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGS---TVLRLTDFGVEGADA---KNIFYLREID 149 (434)
Q Consensus 79 ~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~---~~~~~~~~~~~g~~~---~~v~~~~~~~ 149 (434)
.+.+++.+++++.++.|+.++...+ .+.+.+++ +.||+||+|||+ .|+.|+ ++|.+. ..+++ .+.
T Consensus 74 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~~---~~g~~~~~g~~~~~--~~~ 147 (332)
T 3lzw_A 74 KEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPRKLE---LENAEQYEGKNLHY--FVD 147 (332)
T ss_dssp HHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEECCCC---CTTGGGGBTTTEES--SCS
T ss_pred HHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCCCCC---CCChhhccCceEEE--ecC
Confidence 4445567899999899999998876 67777665 999999999999 777666 455432 33432 222
Q ss_pred HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 150 DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 150 ~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
+... ..+++++|+|+|.+++|+|..|.+.+.+|+++++.+.+.+ .+.. .+.+++.||++++++++.
T Consensus 148 ~~~~-------~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~--~~~~-----~~~l~~~gv~~~~~~~v~ 213 (332)
T 3lzw_A 148 DLQK-------FAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA--HEHS-----VENLHASKVNVLTPFVPA 213 (332)
T ss_dssp CGGG-------GBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS--CHHH-----HHHHHHSSCEEETTEEEE
T ss_pred CHHH-------cCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc--cHHH-----HHHHhcCCeEEEeCceee
Confidence 2222 1578999999999999999999999999999999988754 2222 244788999999999999
Q ss_pred EEEecCCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhhc-cccccCCcEEeCCCCCCCCCcEEEecccccccc
Q 013914 230 GFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKG-QVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~-----g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~ 303 (434)
++..+++ ...+.+.+ ++++++|.|++|+|++|+.++++. ++..++|+|.||+++||++|+|||+|||+..+.
T Consensus 214 ~i~~~~~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~ 291 (332)
T 3lzw_A 214 ELIGEDK--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEG 291 (332)
T ss_dssp EEECSSS--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTT
T ss_pred EEecCCc--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCC
Confidence 9987322 34566654 357999999999999999988754 566678999999999999999999999997542
Q ss_pred cccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 304 KLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 304 ~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
. +..+..|..+|+.||.+|.....+
T Consensus 292 ~-------~~~~~~A~~~g~~aa~~i~~~l~~ 316 (332)
T 3lzw_A 292 K-------VNLIASGFGEAPTAVNNAKAYMDP 316 (332)
T ss_dssp C-------CCCHHHHHHHHHHHHHHHHHHHCT
T ss_pred C-------cceEeeehhhHHHHHHHHHHhhCh
Confidence 1 167889999999999999887654
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=298.25 Aligned_cols=299 Identities=21% Similarity=0.222 Sum_probs=217.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (434)
+++||+|||||++|+++|..|+++|++ |+|||+.+.... .+...+........++++.... .......+.+.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~vie~~~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIK---PILYEGMMANGI---AAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQS 94 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTB---CTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCCCC---CcCcccccchhhcccCCCcccCCHHHHHHHHHHHH
Confidence 468999999999999999999999987 999999652111 1111111111112222221100 000112334556
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEc-----cCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHH
Q 013914 83 KEKGIELILSTEIVRADIASKTLLS-----ATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKL 154 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~-----~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~ 154 (434)
++.+++++.++ +..++.+.+.+.+ .++.++.||++|+|||+.|+.|+ ++|.+ ...+++......
T Consensus 95 ~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~---~~g~~~~~~~~~~~~~~~~~---- 166 (338)
T 3itj_A 95 TKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMH---LPGEETYWQKGISACAVCDG---- 166 (338)
T ss_dssp HHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCC---CTTHHHHBTTTEESCHHHHT----
T ss_pred HHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCC---CCCchhccCccEEEchhccc----
Confidence 67899999986 9999988776554 35678999999999999988776 45532 234443322111
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEe
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTT 233 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~ 233 (434)
.+....+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.+ .+.+.+.+.+ .||++++++.+.++..
T Consensus 167 --~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~~~~v~~i~~ 237 (338)
T 3itj_A 167 --AVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILYNTVALEAKG 237 (338)
T ss_dssp --TSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEECSEEEEEEEE
T ss_pred --chhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEeecceeEEEEc
Confidence 11122578999999999999999999999999999999887765 2334455555 4999999999999987
Q ss_pred cCCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhhccccc-cCCcEEe-CCCCCCCCCcEEEeccccccccccc
Q 013914 234 NADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIET-DDFFKTSADDVYAVGDVATFPMKLY 306 (434)
Q Consensus 234 ~~~g~v~~v~~~~-----g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~v-d~~~~t~~~~iya~GD~~~~~~~~~ 306 (434)
+++.+..+++.+ ++++++|.||+|+|++|+.+++..++.. ++|++.+ |++++|+.|+|||+|||+..+.
T Consensus 238 -~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~--- 313 (338)
T 3itj_A 238 -DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKY--- 313 (338)
T ss_dssp -SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSC---
T ss_pred -ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCc---
Confidence 345566677765 4679999999999999999998777776 5788884 8899999999999999998432
Q ss_pred CcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 307 REMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 307 ~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
+.+..|..+|+.||.+|...+.+
T Consensus 314 ------~~~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 314 ------RQAITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------cceeeehhhhHHHHHHHHHHHhc
Confidence 56888999999999999876543
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=291.25 Aligned_cols=284 Identities=14% Similarity=0.109 Sum_probs=197.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCC---CCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSG---GERLL 78 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 78 (434)
+|++|||+||||||||++||.+|+++|++ |+|||++...+ .+. ...+++....+.. .....
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~---v~lie~~~~gg---------~~~----~~~~~~~~~~~~~~~~~~~~~ 66 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARKQ---IALFDNNTNRN---------RVT----QNSHGFITRDGIKPEEFKEIG 66 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCGG---------GGS----SCBCCSTTCTTBCHHHHHHHH
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCC---------eee----eecCCccCCCCCCHHHHHHHH
Confidence 35689999999999999999999999987 99999974311 010 0111111000000 00011
Q ss_pred hhhHhhc-CcEEEcCCeeEEEEC-C--CCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHH
Q 013914 79 PEWYKEK-GIELILSTEIVRADI-A--SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDA 151 (434)
Q Consensus 79 ~~~~~~~-~v~~~~~~~v~~i~~-~--~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~ 151 (434)
.+.+.++ ++.+... .+..+.. + ..++.+.+++++.||+||||||++|+.|+ +||.+ ...++++...+..
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~---i~G~~~~~~~~v~~~~~~~~~ 142 (304)
T 4fk1_A 67 LNEVMKYPSVHYYEK-TVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPS---IPNVREYYGKSLFSCPYCDGW 142 (304)
T ss_dssp HHHHTTSTTEEEEEC-CEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCS---CTTHHHHBTTTEESCHHHHSG
T ss_pred HHHHHhcCCEEEEee-EEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcccccc---ccCccccccceeeeccccchh
Confidence 1122233 4566665 4444433 2 23677888899999999999999999888 45532 3445543322211
Q ss_pred HHHHHHHHhCCCCcEEEECCCH-HHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 152 DKLVEAIKAKKNGKAVVVGGGY-IGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 152 ~~~~~~l~~~~~~~v~ViG~g~-~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
. .++++++|||+|. .++|+|..+.+.+.+|+++.+.+.+. +.+.+.+++.|++++.++ +..
T Consensus 143 ~--------~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~---------~~~~~~l~~~g~~~~~~~-v~~ 204 (304)
T 4fk1_A 143 E--------LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS---------QTIMDELSNKNIPVITES-IRT 204 (304)
T ss_dssp G--------GTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC---------HHHHHHHHTTTCCEECSC-EEE
T ss_pred H--------hcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch---------hhhhhhhhccceeEeeee-EEE
Confidence 1 1567888888885 56899999999999999998765432 234567888999998775 777
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh-hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCc
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF-KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~-~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 308 (434)
+.. +++.+..+++.+|+++++|.+++++|.+|++.++ ..++.+ ++|+|.||+++|||+|||||+|||++.+.
T Consensus 205 ~~~-~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~----- 278 (304)
T 4fk1_A 205 LQG-EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGP----- 278 (304)
T ss_dssp EES-GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSC-----
T ss_pred eec-CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcc-----
Confidence 765 4566778999999999999988887766655544 557777 67889999999999999999999997543
Q ss_pred ceecccHHHHHHHHHHHHHHHhccC
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|+.||.+|...+
T Consensus 279 ----~~~~~A~~~G~~AA~~i~~~L 299 (304)
T 4fk1_A 279 ----SSLIIAASQGNKAAIAINSDI 299 (304)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHHHH
Confidence 457788899999999886543
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-37 Score=300.70 Aligned_cols=316 Identities=17% Similarity=0.176 Sum_probs=232.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCCh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLP 79 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
+.++||||||||+||+++|..|++ .+.+ |+|||+++...|. +.+.. +.... ... . .....+.
T Consensus 2 ~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~---Vtlie~~~~~~~~-~~~~~-~~~g~--~~~---~-----~~~~~l~ 66 (437)
T 3sx6_A 2 RGSAHVVILGAGTGGMPAAYEMKEALGSGHE---VTLISANDYFQFV-PSNPW-VGVGW--KER---D-----DIAFPIR 66 (437)
T ss_dssp TTSCEEEEECCSTTHHHHHHHHHHHHGGGSE---EEEECSSSEEECG-GGHHH-HHHTS--SCH---H-----HHEEECH
T ss_pred CCCCcEEEECCcHHHHHHHHHHhccCCCcCE---EEEEeCCCCCccc-CCccc-cccCc--cCH---H-----HHHHHHH
Confidence 346899999999999999999999 5665 9999999764442 11100 00000 000 0 0123456
Q ss_pred hhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCC--CCeEEecCHHHHHHHHHH
Q 013914 80 EWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA--KNIFYLREIDDADKLVEA 157 (434)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~ 157 (434)
+++++.+++++.+ .++.++++.++|.+.+++++.||+||+|||+.|+.++ ++|.+. .+.+...+..++..+.+.
T Consensus 67 ~~~~~~gv~~~~~-~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~---ipG~~~~~~~~~~~~~~~~a~~~~~~ 142 (437)
T 3sx6_A 67 HYVERKGIHFIAQ-SAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFEN---VPGSDPHEGPVQSICTVDHAERAFAE 142 (437)
T ss_dssp HHHHTTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGG---STTCSTTTSSEECCSSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEe-EEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCccc---CCCCCcccCcceecccccHHHHHHHH
Confidence 7777889999875 9999999999999999989999999999999998877 566553 366777888888888776
Q ss_pred HHhC-CCCcEEEECCCHH----H--HHHH----HHHHhCCCe-----EEEEccCCccCCccC--CHHHHHHHHHHHHhcC
Q 013914 158 IKAK-KNGKAVVVGGGYI----G--LELS----AALKINNID-----VSMVYPEPWCMPRLF--TADIAAFYEGYYANKG 219 (434)
Q Consensus 158 l~~~-~~~~v~ViG~g~~----~--~e~a----~~l~~~g~~-----v~lv~~~~~~~~~~~--~~~~~~~~~~~l~~~G 219 (434)
+... ..++++|||+|+. | +|+| ..+.+.|.+ |+++++.+.+.+..+ .++..+.+.+.+++.|
T Consensus 143 ~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 222 (437)
T 3sx6_A 143 YQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEG 222 (437)
T ss_dssp HHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCC
Confidence 5432 2346688888554 3 7777 666677864 999999887633111 1357888999999999
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCC-----CcEEECCEEEEcccCccChhhhh-ccccccCCcEEeCCCCCC-CCCcE
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKD-----GRTLEADIVVVGVGGRPLISLFK-GQVAENKGGIETDDFFKT-SADDV 292 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~-----g~~~~~D~vi~a~G~~p~~~~~~-~~~~~~~g~i~vd~~~~t-~~~~i 292 (434)
|+++++++|++++. ++........+ ++++++|.+++++|++|+..+.+ .++..++|+|.||+++|| ++|||
T Consensus 223 I~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~I 300 (437)
T 3sx6_A 223 IEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANI 300 (437)
T ss_dssp CEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTE
T ss_pred CEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCE
Confidence 99999999999975 33211111233 46799999999999998877665 355447899999999999 99999
Q ss_pred EEecccccccccccCcc---eecccHHHHHHHHHHHHHHHhccCCCCcccC
Q 013914 293 YAVGDVATFPMKLYREM---RRVEHVDHARKSAEQAVKTIMATEGGKTVTG 340 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~---~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 340 (434)
||+|||+..+... +.+ ..++++..|..||+.+|+||.....|+++..
T Consensus 301 fa~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~ 350 (437)
T 3sx6_A 301 FAAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQ 350 (437)
T ss_dssp EECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred EEEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999876421 111 1236788999999999999999887765444
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=309.91 Aligned_cols=309 Identities=17% Similarity=0.158 Sum_probs=223.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||+||+++|.+|++.+. +.+|+|||+++++.|. |.+............ ......+++++.
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~v~~g~~~~~~-----------i~~~~~~~~~~~ 69 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPHLAMGWRKFED-----------ISVPLAPLLPKF 69 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHHHHHTCSCGGG-----------SEEESTTTGGGG
T ss_pred CcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHHHhcCCCCHHH-----------hhhcHHHHHHHC
Confidence 579999999999999999999863 5679999999876553 322111111000000 012345667778
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC-CCC
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK-KNG 164 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~-~~~ 164 (434)
+++++.+ +|+.||++.++|.+++|+++.||+||||||+++. ++ ++|.+ .+.+++++.+++.++++.+.+. ..+
T Consensus 70 gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~---i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~ 143 (430)
T 3hyw_A 70 NIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FG---AEGQE-ENSTSICTAEHALETQKKLQELYANP 143 (430)
T ss_dssp TEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CC---SBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred CcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CC---ccCcc-cCcCCcccHHHHHHHHHHHHhhccCC
Confidence 9999997 8999999999999999999999999999999764 33 56643 3456677899998888877643 234
Q ss_pred cEEEECCCH------HHHHHH----HHHHhCC----CeEEEEccCCccCC--ccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 165 KAVVVGGGY------IGLELS----AALKINN----IDVSMVYPEPWCMP--RLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 165 ~v~ViG~g~------~~~e~a----~~l~~~g----~~v~lv~~~~~~~~--~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.++|+|++. .+.|++ ..+.+.| .+|++++..+.+.. ....+...+.+.+.++++||++++++.|
T Consensus 144 ~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v 223 (430)
T 3hyw_A 144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAV 223 (430)
T ss_dssp CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEE
T ss_pred ceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceE
Confidence 455555542 233443 4455554 57899887765532 1245677888999999999999999999
Q ss_pred EEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhccccc---cCCcEEeCCCCC-CCCCcEEEeccccccc
Q 013914 229 VGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAE---NKGGIETDDFFK-TSADDVYAVGDVATFP 302 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~---~~g~i~vd~~~~-t~~~~iya~GD~~~~~ 302 (434)
++++. ++ ..+...+| +++++|++++++|.+|+..+...+... .+|+|.||++|| |++|||||+|||+..+
T Consensus 224 ~~v~~--~~--~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p 299 (430)
T 3hyw_A 224 KAIEP--DK--VIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIP 299 (430)
T ss_dssp EEECS--SE--EEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCC
T ss_pred EEEeC--Cc--eEEEeeCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecC
Confidence 99964 32 23444444 479999999999999987666554333 456799999999 6999999999999876
Q ss_pred ccccCc--ceecccHHHHHHHHHHHHHHHhccCCCCc
Q 013914 303 MKLYRE--MRRVEHVDHARKSAEQAVKTIMATEGGKT 337 (434)
Q Consensus 303 ~~~~~~--~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 337 (434)
...... ...++....|.+||+++|+||+....|++
T Consensus 300 ~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~ 336 (430)
T 3hyw_A 300 PIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNP 336 (430)
T ss_dssp CSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcccCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 532111 11236788999999999999998877653
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=294.52 Aligned_cols=291 Identities=21% Similarity=0.259 Sum_probs=227.7
Q ss_pred CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+||||||||+||+++|..|++ .|.+ |+|||+++...+. +.+...... ..... .....+.+.+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~---V~vie~~~~~~~~-~~~~~~~~~---~~~~~--------~~~~~~~~~~ 66 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKAD---VKVINKSRFSYFR-PALPHVAIG---VRDVD--------ELKVDLSEAL 66 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSE---EEEEESSSEEEEC-CSSCCCCSS---CCCCC--------CEEEEHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEeCCCCceec-cchhhcccC---CcCHH--------HHHHHHHHHH
Confidence 589999999999999999999 6665 9999999764332 211110000 00000 1112345566
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCc----EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGL----IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~----~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l 158 (434)
++.+++++.+ .++.++.+.+.|.+.++. ++.||+||+|||+.|+.++ ++|.+. ..++..+..++..+.+.+
T Consensus 67 ~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~---ipG~~~-~~~~~~~~~~~~~~~~~l 141 (409)
T 3h8l_A 67 PEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATEL---VKGWDK-YGYSVCEPEFATKLREKL 141 (409)
T ss_dssp GGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGG---SBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred hhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccC---CCChhh-cCcCcCCHHHHHHHHHHH
Confidence 6789999998 999999999998887765 3999999999999988777 466442 456677888888888888
Q ss_pred HhCCCCcEEEECCCH-------------------------HHHHHH----HHHHhCCC----eEEEEccCCccCCccCCH
Q 013914 159 KAKKNGKAVVVGGGY-------------------------IGLELS----AALKINNI----DVSMVYPEPWCMPRLFTA 205 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~-------------------------~~~e~a----~~l~~~g~----~v~lv~~~~~~~~~~~~~ 205 (434)
.... ++++|||+|. +++|+| ..+.+.|. +|+++++.+ +++. +++
T Consensus 142 ~~~~-~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~~-~~~ 218 (409)
T 3h8l_A 142 ESFQ-GGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLSD-LSP 218 (409)
T ss_dssp HHCC-SEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SSTT-BCH
T ss_pred HHhc-CCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cccc-cCH
Confidence 7643 5667899991 466766 45567774 899999988 6664 789
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc--cccccCCcEEeCC
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENKGGIETDD 283 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~--~~~~~~g~i~vd~ 283 (434)
.+.+.+.+.+++.||+++++++|++++. + .+.+++|+++++|.+++++|++|+..+.+. ++..++|+|.||+
T Consensus 219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~----~v~~~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~ 292 (409)
T 3h8l_A 219 NSRKAVASIYNQLGIKLVHNFKIKEIRE--H----EIVDEKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL 292 (409)
T ss_dssp HHHHHHHHHHHHHTCEEECSCCEEEECS--S----EEEETTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBT
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC--C----eEEECCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCc
Confidence 9999999999999999999999999965 2 378899999999999999999999755555 3434678899999
Q ss_pred CCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 284 FFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 284 ~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++|| ++|||||+|||+..+.+ ..+..|..||+.||+||.+..
T Consensus 293 ~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 293 NMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp TSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHHHh
Confidence 9999 99999999999986443 678889999999999998876
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=289.62 Aligned_cols=300 Identities=19% Similarity=0.208 Sum_probs=211.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (434)
++++||+|||||++|+++|..|++.|++ |+|||+...... .....+.........+.+.... .......+.+.
T Consensus 6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~lie~~~~~~~---~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (333)
T 1vdc_A 6 THNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDI---APGGQLTTTTDVENFPGFPEGILGVELTDKFRKQ 79 (333)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTB---CTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCcccc---CCCceeeeccccccCCCCccCCCHHHHHHHHHHH
Confidence 4468999999999999999999999887 999998210000 0000111111111122221100 00001123345
Q ss_pred HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCCC-------CCeEEecCHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADA-------KNIFYLREIDDAD 152 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~-------~~v~~~~~~~~~~ 152 (434)
+++.+++++.++ +..++.+.+ ++.+ ++.++.||++|+|||+.|..|+ +++.+. ..++++......
T Consensus 80 ~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~- 153 (333)
T 1vdc_A 80 SERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLS---FVGSGEVLGGFWNRGISACAVCDGA- 153 (333)
T ss_dssp HHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECCCC---CBTCSSSSSCCBTTTEESCHHHHTT-
T ss_pred HHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCCCC---CCCccccccccccCcEEEeccCccc-
Confidence 566799999985 888987665 5666 6778999999999999988776 455432 233322221111
Q ss_pred HHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 153 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 153 ~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
+....+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++.||++++++++.++.
T Consensus 154 -----~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~~~~v~~i~ 222 (333)
T 1vdc_A 154 -----APIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIWNSSVVEAY 222 (333)
T ss_dssp -----SGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEECSEEEEEEE
T ss_pred -----hhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEecCCceEEEe
Confidence 1112578999999999999999999999999999999887643 2322 2244578899999999999998
Q ss_pred ecCCC-cEEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCC-CCCCCCcEEEeccccccccc
Q 013914 233 TNADG-EVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 233 ~~~~g-~v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~ 304 (434)
.+.++ .+..+.+. +| +++++|.|++|+|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 223 ~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~- 301 (333)
T 1vdc_A 223 GDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY- 301 (333)
T ss_dssp ESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC-
T ss_pred CCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCc-
Confidence 73221 55556654 45 578999999999999999988766666 5789999997 6899999999999998642
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
..+..|..+|+.||.+|.....
T Consensus 302 --------~~~~~A~~~g~~aa~~i~~~l~ 323 (333)
T 1vdc_A 302 --------RQAITAAGTGCMAALDAEHYLQ 323 (333)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHhHHHHHHHHHHHHH
Confidence 4678899999999999987553
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=286.13 Aligned_cols=283 Identities=16% Similarity=0.086 Sum_probs=206.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
++||+|||||+||+++|..|++.|++ |+|||+++..... +.. ...++.............+.+.+.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARKN---ILLVDAGERRNRF-ASH---------SHGFLGQDGKAPGEIIAEARRQIER 68 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCC---EEEEECCCCGGGG-CSC---------CCSSTTCTTCCHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCccccc-chh---------hcCCcCCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999999986 9999997531100 000 0111111000000001122333444
Q ss_pred c-CcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhC
Q 013914 85 K-GIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAK 161 (434)
Q Consensus 85 ~-~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~ 161 (434)
. +++++.+ .++.++++.+ .+.+.++.++.||++|+|||+.|+.|+.+++.......+++..... .. ..
T Consensus 69 ~~~v~~~~~-~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-------~~ 139 (297)
T 3fbs_A 69 YPTIHWVEG-RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCH-GY-------EL 139 (297)
T ss_dssp CTTEEEEES-CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHH-TG-------GG
T ss_pred cCCeEEEEe-EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCc-ch-------hh
Confidence 4 7888775 8999987654 5677788889999999999999887774332222224455432111 11 12
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|+|+|++|+|+|..|.+.| +|+++.+.+.. +. +.+.+.+++.||+++. ++++++.. ++ .
T Consensus 140 ~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~-~~v~~i~~--~~---~ 204 (297)
T 3fbs_A 140 DQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET-TRIREIAG--HA---D 204 (297)
T ss_dssp TTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC-SCEEEEET--TE---E
T ss_pred cCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc-ceeeeeec--CC---e
Confidence 5799999999999999999999999 99999887652 33 3456778899999996 88999975 32 6
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhc-ccccc---CC-cEEeCCCCCCCCCcEEEecccccccccccCcceecccHH
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAEN---KG-GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVD 316 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~---~g-~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~ 316 (434)
+.+.+|+++++|.|++|+|++|+.++++. ++..+ .| ++.||++++|++|+|||+|||+..+ ..+.
T Consensus 205 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~----------~~~~ 274 (297)
T 3fbs_A 205 VVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPA----------GSVA 274 (297)
T ss_dssp EEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTT----------CCHH
T ss_pred EEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCch----------HHHH
Confidence 88899999999999999999999887754 45543 45 7999999999999999999999863 5788
Q ss_pred HHHHHHHHHHHHHhccCC
Q 013914 317 HARKSAEQAVKTIMATEG 334 (434)
Q Consensus 317 ~A~~~g~~aa~~i~~~~~ 334 (434)
.|..+|+.||.+|.....
T Consensus 275 ~A~~~g~~aa~~i~~~l~ 292 (297)
T 3fbs_A 275 LAVGDGAMAGAAAHRSIL 292 (297)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 899999999999986543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=299.48 Aligned_cols=293 Identities=19% Similarity=0.246 Sum_probs=215.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+|||||+||+++|.+|++.|.+ |+|+|+.....+ ........++.+...........+.+.++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~---v~lie~~~GG~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 278 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIR---TGLMGERFGGQV---------LDTVDIENYISVPKTEGQKLAGALKAHVS 278 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSTTGGG---------TTCSCBCCBTTBSSBCHHHHHHHHHHHHH
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCe---EEEEECCCCCcc---------cccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999987 999987421000 00000111111110000000112344556
Q ss_pred hcCcEEEcCCeeEEEECC-----CCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH
Q 013914 84 EKGIELILSTEIVRADIA-----SKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI 158 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~-----~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l 158 (434)
+.+++++.++.+..++++ ..++.+.++.++.||++|+|||+.|+.++.++........++++......
T Consensus 279 ~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~------- 351 (521)
T 1hyu_A 279 DYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP------- 351 (521)
T ss_dssp TSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-------
T ss_pred HcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-------
Confidence 789999999999999864 34577778888999999999999988777433322223456544332211
Q ss_pred HhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCC
Q 013914 159 KAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADG 237 (434)
Q Consensus 159 ~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g 237 (434)
...+++++|||+|++|+|+|..|++.|.+|+++++.+.+.. + ..+.+.+++ .||++++++.++++.. +++
T Consensus 352 -~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~~~~v~~i~~-~~~ 422 (521)
T 1hyu_A 352 -LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIILNAQTTEVKG-DGS 422 (521)
T ss_dssp -GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEECSEEEEEEEE-CSS
T ss_pred -hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEeCCEEEEEEc-CCC
Confidence 11578999999999999999999999999999999887754 3 345566666 6999999999999987 345
Q ss_pred cEEEEEeCC---Cc--EEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 238 EVKEVKLKD---GR--TLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 238 ~v~~v~~~~---g~--~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
++..+.+.+ |+ ++++|.|++|+|++||++++...+.. .+|+|.||+++||++|+|||+|||+..+.
T Consensus 423 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~-------- 494 (521)
T 1hyu_A 423 KVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPY-------- 494 (521)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSS--------
T ss_pred cEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCCCCCCCEEEeecccCCCc--------
Confidence 665666643 54 68999999999999999888765655 57899999999999999999999998653
Q ss_pred cccHHHHHHHHHHHHHHHhccC
Q 013914 312 VEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.+..|..+|+.||.++...+
T Consensus 495 -~~~~~A~~~g~~aa~~i~~~L 515 (521)
T 1hyu_A 495 -KQIIIATGEGAKASLSAFDYL 515 (521)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH
T ss_pred -ceeeehHHhHHHHHHHHHHHH
Confidence 467889999999999987643
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=287.02 Aligned_cols=292 Identities=17% Similarity=0.204 Sum_probs=209.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccC-CCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVG-SGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (434)
++++||+|||||++|+++|..|++.|++ |+|||+..... .+.........+.+..... ......+.++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~---v~lie~~~~gg--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQLA---PLVFEGTSFGG--------ALMTTTDVENYPGFRNGITGPELMDEMREQ 80 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTCC---CEEECCSSCSC--------GGGSCSCBCCSTTCTTCBCHHHHHHHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCe---EEEEecCCCCC--------ceeccchhhhcCCCCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999999887 99999763211 0111111112222211000 0001123345
Q ss_pred HhhcCcEEEcCCeeEEEECCC-CEE-EccCCcEEEcceEEEecCCCcccccCCCCCCCC---CCCeEEecCHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIAS-KTL-LSATGLIFKYQILVIATGSTVLRLTDFGVEGAD---AKNIFYLREIDDADKLVE 156 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~-~~v-~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~---~~~v~~~~~~~~~~~~~~ 156 (434)
+++.+++++.++ +..++... .++ .+.+++++.||+||+|||+.|..|+ ++|.+ ...++++....+.
T Consensus 81 ~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~---i~g~~~~~~~~~~~~~~~~~~----- 151 (335)
T 2a87_A 81 ALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQ---VPGEQELLGRGVSSCATCDGF----- 151 (335)
T ss_dssp HHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCC---CTHHHHTBTTTEESCHHHHGG-----
T ss_pred HHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCC---CCchHhccCCceEEeeccchh-----
Confidence 566799999985 88888732 356 6677788999999999999988776 45432 2344433322221
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
+ ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++.||+++++++++++.. +
T Consensus 152 -~--~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~~~~v~~i~~--~ 220 (335)
T 2a87_A 152 -F--FRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLTNHTVVAVDG--D 220 (335)
T ss_dssp -G--GTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEECSEEEEEEEC--S
T ss_pred -h--cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEeCceeEEEec--C
Confidence 1 2579999999999999999999999999999999887643 2222 12445779999999999999986 3
Q ss_pred CcEEEEEeC---CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCC-CCCCCCcEEEecccccccccccCcc
Q 013914 237 GEVKEVKLK---DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDF-FKTSADDVYAVGDVATFPMKLYREM 309 (434)
Q Consensus 237 g~v~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~-~~t~~~~iya~GD~~~~~~~~~~~~ 309 (434)
+.+..+.+. +| +++++|.|++|+|++|++++++.++.. ++|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 221 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~------ 294 (335)
T 2a87_A 221 TTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTY------ 294 (335)
T ss_dssp SSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSC------
T ss_pred CcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccH------
Confidence 333344443 45 579999999999999999988766666 5789999996 6899999999999998642
Q ss_pred eecccHHHHHHHHHHHHHHHhccCC
Q 013914 310 RRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 310 ~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
..+..|..+|+.||.+|...+.
T Consensus 295 ---~~~~~A~~~g~~aA~~i~~~l~ 316 (335)
T 2a87_A 295 ---RQAVTAAGSGCAAAIDAERWLA 316 (335)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhHHHHHHHHHHHhh
Confidence 4677888999999999876543
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=280.45 Aligned_cols=301 Identities=17% Similarity=0.255 Sum_probs=201.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCccCccccCCCCCCCCCCcccccCCC-------C
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSKAYLFPEGTARLPGFHVCVGSG-------G 74 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 74 (434)
+++||+|||||++|+++|..|+++|++ |+|||+++... |........+..+.....++++....... .
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~---v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRSGLS---YVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEV 78 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHSSCC---EEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence 368999999999999999999999987 99999986532 10000000011111111222211110000 0
Q ss_pred CCCChhhHhhcCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCC--CcccccCCCCCCCCC--CCeEEecC
Q 013914 75 ERLLPEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGS--TVLRLTDFGVEGADA--KNIFYLRE 147 (434)
Q Consensus 75 ~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~--~~~~~~~~~~~g~~~--~~v~~~~~ 147 (434)
...+.+.+++.+++++.++.|+.++.+.+. +.+.++ ++.||+||+|||. .|..|+ ++|... ...++...
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~~~~---~~g~~~~~~~~~~~~~ 154 (357)
T 4a9w_A 79 LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAYTPE---YQGLESFAGIQLHSAH 154 (357)
T ss_dssp HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBCCCC---CTTGGGCCSEEEEGGG
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCCCCC---CCCccccCCcEEEecc
Confidence 112334455679999999999999988776 666666 8999999999995 565666 455321 12232222
Q ss_pred HHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCccC-CHHHHHHHHHHHH---------
Q 013914 148 IDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLF-TADIAAFYEGYYA--------- 216 (434)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~~~~~-~~~~~~~~~~~l~--------- 216 (434)
..+... ..+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++..+ ...+.+.+.+.+.
T Consensus 155 ~~~~~~-------~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (357)
T 4a9w_A 155 YSTPAP-------FAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPD 226 (357)
T ss_dssp CCCSGG-------GTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC---------------
T ss_pred CCChhh-------cCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCC
Confidence 211111 15789999999999999999999998 69999987 55655432 2344333333332
Q ss_pred -------------------hcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccccC
Q 013914 217 -------------------NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAENK 276 (434)
Q Consensus 217 -------------------~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~~~ 276 (434)
+.|+ +.....+.+++. ..+.+.+|+++++|.|++|+|++|++++++. ++..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~------~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~ 299 (357)
T 4a9w_A 227 LPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSP------TGMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQ 299 (357)
T ss_dssp -------CBCCCHHHHHHHHTTC-CCEECCCSEEET------TEEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTT
T ss_pred cccccccCcccChhHHHHHhcCc-eEEecCcceEeC------CeeEECCCCEecCCEEEECCCcCCCCcccCcccccCCC
Confidence 3444 445556666654 2478899999999999999999999888754 565677
Q ss_pred CcEEeCCC--CCCCCCcEEEec--ccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 277 GGIETDDF--FKTSADDVYAVG--DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 277 g~i~vd~~--~~t~~~~iya~G--D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
|+|.||++ ++|++|+|||+| ||+.... ..+..|..+|+.+|.+|...+.+
T Consensus 300 G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~---------~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 300 GQVEVDGSGLRALAVPSVWLLGYGDWNGMAS---------ATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp SCBCBCTTSCBBSSCTTEEECSSCGGGSTTC---------SSTTTHHHHHHHHHHHHHHHTC-
T ss_pred CCccccCCcccCCCCCCeEEeccccccccch---------hhhhhhHHHHHHHHHHHHHHHHh
Confidence 89999999 899999999999 5665221 34556889999999999887654
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=272.36 Aligned_cols=303 Identities=14% Similarity=0.153 Sum_probs=206.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCCCCC-CC-CCccCccccCCCCC---CCCCCcc--------c-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEAVAP-YE-RPALSKAYLFPEGT---ARLPGFH--------V- 68 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~~~~-~~-~~~~~~~~~~~~~~---~~~~~~~--------~- 68 (434)
+++||+|||||++|+++|..|++.|. + |+|||+++... +. .+.. ..++.+... ..+..+. .
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~~~---v~lie~~~~Gg~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 78 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGITD---VIILEKGTVGHSFKHWPKS-TRTITPSFTSNGFGMPDMNAISMDTSPAF 78 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCC---EEEECSSSTTHHHHTSCTT-CBCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCCCc---EEEEecCCCCCccccCccc-ccccCcchhcccCCchhhhhccccccccc
Confidence 36899999999999999999999987 5 99999986110 00 0000 000000000 0000000 0
Q ss_pred ccCCC------CCCCChhhHhhcCcEEEcCCeeEEEECCC--CEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCC
Q 013914 69 CVGSG------GERLLPEWYKEKGIELILSTEIVRADIAS--KTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAK 140 (434)
Q Consensus 69 ~~~~~------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~ 140 (434)
..... ....+...+++.+++++.++.|+.++++. ..|.+.++ ++.||+||+|||+.+. |. +|+ .
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~-p~---ip~---~ 150 (369)
T 3d1c_A 79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF-PK---KPF---K 150 (369)
T ss_dssp HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS-BC---CCS---S
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc-cC---CCC---C
Confidence 00000 00112234456799999998999998764 34665555 5999999999999865 33 344 2
Q ss_pred CeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------cCCHHHHHHHHHH
Q 013914 141 NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------LFTADIAAFYEGY 214 (434)
Q Consensus 141 ~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------~~~~~~~~~~~~~ 214 (434)
.+++...+.+.. ..+.++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. .+++...+.+.+.
T Consensus 151 ~~~~~~~~~~~~-------~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~ 223 (369)
T 3d1c_A 151 YGIHYSEIEDFD-------NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNV 223 (369)
T ss_dssp SCEEGGGCSCGG-------GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHH
T ss_pred ceechhhcCChh-------hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHH
Confidence 344443322221 125679999999999999999999999999999998887642 1457778899999
Q ss_pred HHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEcccCccChhhhhc-cccccCCcEEeCCC-CCCCCC
Q 013914 215 YANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKG-QVAENKGGIETDDF-FKTSAD 290 (434)
Q Consensus 215 l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~-~D~vi~a~G~~p~~~~~~~-~~~~~~g~i~vd~~-~~t~~~ 290 (434)
+++.| |++++++.|.+++..++ ...+.+.+|+++. +|.+|+|+|++|+.+++.. .+..++|++.||++ ++|++|
T Consensus 224 l~~~g~v~~~~~~~v~~i~~~~~--~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~ 301 (369)
T 3d1c_A 224 IKQGARIEMNVHYTVKDIDFNNG--QYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYP 301 (369)
T ss_dssp HHTTCCEEEECSCCEEEEEEETT--EEEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSST
T ss_pred HhhCCcEEEecCcEEEEEEecCC--ceEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCC
Confidence 99997 99999999999975222 2467888997665 6999999999999965543 44445678999986 678999
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+|||+|||+..+.... ..+..+.+||+.+|++|.+..
T Consensus 302 ~v~a~GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 302 NIFMIGATVENDNAKL------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp TEEECSTTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred CeEEeccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence 9999999998755421 345567789999999998764
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=278.20 Aligned_cols=287 Identities=20% Similarity=0.221 Sum_probs=203.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.+||+|||||+||+++|..|++.|++ |+|||+.+..+. ++.. .+|.+... ........++++
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~---V~v~e~~~~~GG--------~l~~----gip~~~~~--~~~~~~~~~~l~ 183 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYE---VHVYDRYDRMGG--------LLVY----GIPGFKLE--KSVVERRVKLLA 183 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSCST--------HHHH----TSCTTTSC--HHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCCCCC--------eeee----cCCCccCC--HHHHHHHHHHHH
Confidence 358999999999999999999999987 999999865321 1100 11211100 000122345677
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHHHH-----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLVEA----- 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----- 157 (434)
+.|++++.++.+. +.+.+.+. .+.||++|+|||+. |+.++ ++|.+.+++++..++.........
T Consensus 184 ~~gv~~~~~~~v~------~~v~~~~~-~~~~d~vvlAtG~~~~~~~~---ipG~~~~gv~~a~~~l~~~~~~~~~~~~~ 253 (456)
T 2vdc_G 184 DAGVIYHPNFEVG------RDASLPEL-RRKHVAVLVATGVYKARDIK---APGSGLGNIVAALDYLTTSNKVSLGDTVE 253 (456)
T ss_dssp HTTCEEETTCCBT------TTBCHHHH-HSSCSEEEECCCCCEECCTT---CSCCTTTTEEEHHHHHHHHHHHHCTTTCS
T ss_pred HCCcEEEeCCEec------cEEEhhHh-HhhCCEEEEecCCCCCCCCC---CCCCcCCCcEEHHHHHHHhhhhhcccccc
Confidence 7899999986542 22333332 25799999999996 55555 688777788764433221111100
Q ss_pred -----HHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc-CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 158 -----IKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC-MPRLFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 158 -----l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~-~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.....+++|+|||+|.+|+|+|..+.+.|. +|+++++.+.. ++. .+.+ .+.+++.||++++++.+++
T Consensus 254 ~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~~~~~~~ 327 (456)
T 2vdc_G 254 AYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIWQAAPEG 327 (456)
T ss_dssp SCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEECCSSSCC
T ss_pred cccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEeCCCceE
Confidence 011257899999999999999999999997 59999998876 553 2332 2457788999999999988
Q ss_pred EEecCCCcEEEEEe---------C---------CC--cEEECCEEEEcccCccChh--hhh-ccccc-cCCcEEeCCC-C
Q 013914 231 FTTNADGEVKEVKL---------K---------DG--RTLEADIVVVGVGGRPLIS--LFK-GQVAE-NKGGIETDDF-F 285 (434)
Q Consensus 231 i~~~~~g~v~~v~~---------~---------~g--~~~~~D~vi~a~G~~p~~~--~~~-~~~~~-~~g~i~vd~~-~ 285 (434)
+.. ++++..+++ . +| .++++|.||+|+|++|++. ++. .++.. .+|+|.||++ +
T Consensus 328 i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~ 405 (456)
T 2vdc_G 328 FTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTK 405 (456)
T ss_dssp EEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTC
T ss_pred EeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCC
Confidence 875 343322222 1 23 4689999999999999875 444 35666 6789999997 9
Q ss_pred CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 286 KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 286 ~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
||+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.+
T Consensus 406 ~Ts~~~VfA~GD~~~g~----------~~v~~A~~~G~~aA~~i~~~L~~ 445 (456)
T 2vdc_G 406 MTNMDGVFAAGDIVRGA----------SLVVWAIRDGRDAAEGIHAYAKA 445 (456)
T ss_dssp BCSSTTEEECGGGGSSC----------CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEeccccCCc----------hHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999998764 46888999999999999876544
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=295.92 Aligned_cols=317 Identities=17% Similarity=0.198 Sum_probs=217.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||+|||||+||++||.+|++.|+. +|+|||+.+..+.. +. ..+|.+.... .......+++++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~--~Vtv~E~~~~~GG~--------~~----~~ip~~~~~~--~~~~~~~~~~~~ 250 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYVGGL--------ST----SEIPQFRLPY--DVVNFEIELMKD 250 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSCSTH--------HH----HTSCTTTSCH--HHHHHHHHHHHT
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCC--cEEEEeCCCCCCcc--------cc----ccCCcccCCH--HHHHHHHHHHHH
Confidence 57999999999999999999999972 29999998643211 10 0111111100 000112356677
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC-CcccccCCCCCCCC-CCCeEEecCHHHHHHHHHH-----
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS-TVLRLTDFGVEGAD-AKNIFYLREIDDADKLVEA----- 157 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~-~~~~~~~~~~~g~~-~~~v~~~~~~~~~~~~~~~----- 157 (434)
.|++++.++.+. .+.+.+.++.++.||+||||||+ .|+.++. ++|.+ ..++++..++.........
T Consensus 251 ~gv~~~~~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~--~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~ 323 (1025)
T 1gte_A 251 LGVKIICGKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDI--FQGLTQDQGFYTSKDFLPLVAKSSKAGMCA 323 (1025)
T ss_dssp TTCEEEESCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGG--GTTCCTTTTEEEHHHHHHHHHHHHCBTTBS
T ss_pred CCcEEEcccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCC--CCCCCCCCCEEEhHHHHHHHHhhccccccc
Confidence 899999986652 23455555555789999999999 5876664 23432 3567754432221110000
Q ss_pred HH---hCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc-cCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 158 IK---AKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 158 l~---~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~-~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
+. ...+++++|||+|++|+|+|..+.+.|. +|+++++.++ .++. ++.++ +.+++.||++++++.+.++.
T Consensus 324 ~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~-~~~e~-----~~~~~~Gv~~~~~~~~~~i~ 397 (1025)
T 1gte_A 324 CHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VPEEV-----ELAKEEKCEFLPFLSPRKVI 397 (1025)
T ss_dssp CCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CHHHH-----HHHHHTTCEEECSEEEEEEE
T ss_pred ccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCC-CHHHH-----HHHHHcCCEEEeCCCceEEE
Confidence 00 1135799999999999999999999996 8999999884 4443 44443 45778999999999999997
Q ss_pred ecCCCcEEEEEeC------CC---------cEEECCEEEEcccCccC-hhhhhc--cccc-cCCcEEeCC-CCCCCCCcE
Q 013914 233 TNADGEVKEVKLK------DG---------RTLEADIVVVGVGGRPL-ISLFKG--QVAE-NKGGIETDD-FFKTSADDV 292 (434)
Q Consensus 233 ~~~~g~v~~v~~~------~g---------~~~~~D~vi~a~G~~p~-~~~~~~--~~~~-~~g~i~vd~-~~~t~~~~i 292 (434)
. +++++..+++. +| .++++|.||+|+|++|+ ..++.. ++.. .+|+|.||+ ++||+.|+|
T Consensus 398 ~-~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~V 476 (1025)
T 1gte_A 398 V-KGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWV 476 (1025)
T ss_dssp E-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTE
T ss_pred c-cCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCE
Confidence 6 35666656542 23 36899999999999864 555543 5666 578899997 899999999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC---CCcccCCCCCCeeEE--eccCceeEEeec
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG---GKTVTGYDYLPYFYS--RAFDLSWQFYGD 361 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~---~~~~~~~~~~p~~~~--~~~~~~~~~~g~ 361 (434)
||+|||+..+ ..+..|..+|+.||.+|.+.+. +.....+..+|++|+ ...++.....|.
T Consensus 477 fA~GD~~~~~----------~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ev~~v~ls~~~~G~ 540 (1025)
T 1gte_A 477 FAGGDIVGMA----------NTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYTPVDLVDISVEMAGL 540 (1025)
T ss_dssp EECSGGGCSC----------CCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCCGGGGCCCCEEETTE
T ss_pred EEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccccccccccceeeeccc
Confidence 9999999754 4577788999999999986432 222235667888887 455555555554
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=271.98 Aligned_cols=291 Identities=13% Similarity=0.156 Sum_probs=202.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..+||+|||||+||+++|..|++.| +..+|+|||+++.. +. .+.... .|.+... ......+.++++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~~~V~vie~~~~~-gg-------~~~~g~---~p~~~~~--~~~~~~~~~~~~ 70 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHH-SRAHVDIYEKQLVP-FG-------LVRFGV---APDHPEV--KNVINTFTQTAR 70 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHC-SSCEEEEECSSSSS-CT-------HHHHTS---CTTCGGG--GGHHHHHHHHHT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcC-CCCCEEEEeCCCcC-Cc-------eeeccc---CCCCccH--HHHHHHHHHHHH
Confidence 3589999999999999999999987 23449999998653 21 110000 0111100 000112345566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCc-ccccCCCCCCCCCCCeEEecCHHHHHHHHHH-----
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV-LRLTDFGVEGADAKNIFYLREIDDADKLVEA----- 157 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~-~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~----- 157 (434)
+.+++++.++.+ .+.|.+.+. .+.||+||+|||+.| +.|+ +||.+.+++++..++.. +.+.
T Consensus 71 ~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~---ipG~~~~gv~~~~~~~~---~~~~~~d~~ 137 (460)
T 1cjc_A 71 SDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALD---IPGEELPGVFSARAFVG---WYNGLPENR 137 (460)
T ss_dssp STTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHHH---HHTTCGGGT
T ss_pred hCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCC---CCCCCCCcEEEHHHHHH---HhhcCcccc
Confidence 778999987654 233444432 468999999999995 6565 67777778887654422 1111
Q ss_pred -HH-hCCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-eEEEEccCCccC--------------C
Q 013914 158 -IK-AKKNGKAVVVGGGYIGLELSAALK--------------------INNI-DVSMVYPEPWCM--------------P 200 (434)
Q Consensus 158 -l~-~~~~~~v~ViG~g~~~~e~a~~l~--------------------~~g~-~v~lv~~~~~~~--------------~ 200 (434)
+. ...+++++|||+|++|+|+|..|. +.|. +|+++.+.+.+. +
T Consensus 138 ~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp 217 (460)
T 1cjc_A 138 ELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLP 217 (460)
T ss_dssp TCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCT
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCC
Confidence 00 114789999999999999999998 5676 799999987652 2
Q ss_pred c--------c----------CCHH---HHHHHHHHHHh--------------cCcEEEcCCeEEEEEecCCC-cEEEEEe
Q 013914 201 R--------L----------FTAD---IAAFYEGYYAN--------------KGIKIIKGTVAVGFTTNADG-EVKEVKL 244 (434)
Q Consensus 201 ~--------~----------~~~~---~~~~~~~~l~~--------------~GV~~~~~~~v~~i~~~~~g-~v~~v~~ 244 (434)
. . ++.. +.+.+.+.+++ .||++++++.+.+|..++++ ++..+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~ 297 (460)
T 1cjc_A 218 GTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRL 297 (460)
T ss_dssp TEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEE
T ss_pred CceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEE
Confidence 1 0 0111 23344455555 89999999999999874335 6655655
Q ss_pred C---------------CC--cEEECCEEEEcccCccChhhhhccc-cc-cCCcEEeCCCCCCC-CCcEEEeccccccccc
Q 013914 245 K---------------DG--RTLEADIVVVGVGGRPLISLFKGQV-AE-NKGGIETDDFFKTS-ADDVYAVGDVATFPMK 304 (434)
Q Consensus 245 ~---------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~-~~-~~g~i~vd~~~~t~-~~~iya~GD~~~~~~~ 304 (434)
. +| ++++||+|++|+|++|++ + .++ .+ ++|+|.||+++||+ +|+|||+|||+..+.
T Consensus 298 ~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~- 373 (460)
T 1cjc_A 298 AVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPT- 373 (460)
T ss_dssp EEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTT-
T ss_pred EEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCC-
Confidence 3 34 579999999999999997 3 456 56 56889999999998 799999999997543
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|+.+|.+|++..
T Consensus 374 --------~~i~~a~~~g~~aa~~i~~~l 394 (460)
T 1cjc_A 374 --------GVITTTMTDSFLTGQILLQDL 394 (460)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999998764
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=289.27 Aligned_cols=284 Identities=16% Similarity=0.218 Sum_probs=207.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||||||||+||++||.+|++.|++ |+|||+++..+ .. ++.. ....+++... ........+.+.+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~---V~lie~~~~~G-G~------~~~~-~k~~i~~~~~---~~~~~~~~~~l~~ 193 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGAR---VMLLDERAEAG-GT------LLDT-AGEQIDGMDS---SAWIEQVTSELAE 193 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSS-GG------GGGS-SCCEETTEEH---HHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCCCC-ce------eccC-CccccCCCCH---HHHHHHHHHHHhh
Confidence 57999999999999999999999987 99999986532 10 1100 0000111000 0000111223334
Q ss_pred -cCcEEEcCCeeEEEECCCCEEE---------c--------cCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEec
Q 013914 85 -KGIELILSTEIVRADIASKTLL---------S--------ATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLR 146 (434)
Q Consensus 85 -~~v~~~~~~~v~~i~~~~~~v~---------~--------~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~ 146 (434)
.+++++.++.|+.++....... + .++.++.||+||||||+.|+.++ ++|.+.+++++..
T Consensus 194 ~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~---ipG~~~~gv~~~~ 270 (965)
T 2gag_A 194 AEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV---FENNDRPGIMLAG 270 (965)
T ss_dssp STTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC---CBTCCSTTEEEHH
T ss_pred cCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC---CCCCCCCCEEEhH
Confidence 4899999988998876543211 1 11236899999999999998777 6887778888765
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 147 EIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
+..+. .+.....++++++|||+|++|+|+|..|.+.|.+|+++++.+.+++ . .+.+++.||++++++
T Consensus 271 ~~~~~---l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~-----~-----~~~l~~~GV~v~~~~ 337 (965)
T 2gag_A 271 AVRSY---LNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA-----A-----AAQAVADGVQVISGS 337 (965)
T ss_dssp HHHHH---HHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH-----H-----HHHHHHTTCCEEETE
T ss_pred HHHHH---HHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch-----h-----HHHHHhCCeEEEeCC
Confidence 44322 2211122468999999999999999999999999999999877643 1 466889999999999
Q ss_pred eEEEEEecCCCcEEEEEeCC-------C--cEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCC-----CCCCcE
Q 013914 227 VAVGFTTNADGEVKEVKLKD-------G--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFK-----TSADDV 292 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~-------g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~-----t~~~~i 292 (434)
.+.++..++++++..+++.+ | +++++|.|++|+|++|+++++.. .+++|.+|++++ |++|+|
T Consensus 338 ~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~----~~g~i~vd~~~~~~v~~ts~p~I 413 (965)
T 2gag_A 338 VVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQ----RQGKLDWDTTIHAFVPADAVANQ 413 (965)
T ss_dssp EEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHH----TTCCEEEETTTTEEEECSCCTTE
T ss_pred EeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHh----CCCcEEEcCcccccccCCCCCCE
Confidence 99999873245666676654 5 57999999999999999988753 257899999988 899999
Q ss_pred EEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 293 YAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 293 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
||+|||++.+. +..|..+|+.||.+|.+..
T Consensus 414 yAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 414 HLAGAMTGRLD-----------TASALSTGAATGAAAATAA 443 (965)
T ss_dssp EECGGGGTCCS-----------HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCchh-----------HHHHHHHHHHHHHHHHHHc
Confidence 99999998642 3478899999999998764
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-33 Score=270.40 Aligned_cols=287 Identities=17% Similarity=0.213 Sum_probs=198.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-c------CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAK-Q------GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGER 76 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~-~------g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (434)
+.+||+|||||+||+++|..|++ . +.+ |+|||+.+.. +..+ ..+. .|.... ......
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~---V~lie~~~~~-gg~~--~~gv--------~p~~~~--~~~~~~ 65 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMA---VDMLEMLPTP-WGLV--RSGV--------APDHPK--IKSISK 65 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEE---EEEEESSSSC-STHH--HHTS--------CTTCTG--GGGGHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCe---EEEEecCCCC-CCcc--cccc--------CCCCCC--HHHHHH
Confidence 46899999999999999999999 7 665 9999998652 2111 0000 011000 000011
Q ss_pred CChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCC-cccccCCCCCCCCCCCeEEecCHHHHHHHH
Q 013914 77 LLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGST-VLRLTDFGVEGADAKNIFYLREIDDADKLV 155 (434)
Q Consensus 77 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 155 (434)
.+.+++++.+++++.+..+ .+.|.+.++ ++.||+||+|||+. |+.++ ++|.+..++++..++. .+.
T Consensus 66 ~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~~~~---ipG~~~~gv~~~~~~~---~~~ 132 (456)
T 1lqt_A 66 QFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDRMLN---IPGEDLPGSIAAVDFV---GWY 132 (456)
T ss_dssp HHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCC---CTTTTSTTEEEHHHHH---HHH
T ss_pred HHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCCCCC---CCCCCCCCcEEHHHHH---hhh
Confidence 2334556678999887442 234555444 47899999999997 56665 6777667787655432 211
Q ss_pred HH-------HHhCCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CeEEEEccCCccCCccCCH--
Q 013914 156 EA-------IKAKKNGKAVVVGGGYIGLELSAALKIN--------------------N-IDVSMVYPEPWCMPRLFTA-- 205 (434)
Q Consensus 156 ~~-------l~~~~~~~v~ViG~g~~~~e~a~~l~~~--------------------g-~~v~lv~~~~~~~~~~~~~-- 205 (434)
+. +....+++++|||+|++|+|+|..|.+. | .+|+++.+.+.+...+..+
T Consensus 133 ~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~el 212 (456)
T 1lqt_A 133 NAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLEL 212 (456)
T ss_dssp TTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHH
T ss_pred hcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHH
Confidence 11 1112478999999999999999999874 5 5999999988765431111
Q ss_pred ----------------HH------------------HHHHHHHHHh------cCcEEEcCCeEEEEEecCCCcEEEEEeC
Q 013914 206 ----------------DI------------------AAFYEGYYAN------KGIKIIKGTVAVGFTTNADGEVKEVKLK 245 (434)
Q Consensus 206 ----------------~~------------------~~~~~~~l~~------~GV~~~~~~~v~~i~~~~~g~v~~v~~~ 245 (434)
++ .+.+.+.+++ .||++++++.+.++.. ++++..+++.
T Consensus 213 rel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~--~~~v~~v~~~ 290 (456)
T 1lqt_A 213 RELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKG--KRKVERIVLG 290 (456)
T ss_dssp HHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEEC--SSSCCEEEEE
T ss_pred HHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEec--CCcEeEEEEE
Confidence 11 2344455555 7999999999999986 3444444443
Q ss_pred ----------------CC--cEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCC-CCCCcEEEecccccccccc
Q 013914 246 ----------------DG--RTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFK-TSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 246 ----------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~-t~~~~iya~GD~~~~~~~~ 305 (434)
+| ++++||+|++|+|++|++ + .++.+ ++|++.+|+++| |+.|+|||+|||+..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l--~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~-- 365 (456)
T 1lqt_A 291 RNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T--PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPT-- 365 (456)
T ss_dssp EEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C--TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSC--
T ss_pred EEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C--CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCc--
Confidence 34 468999999999999998 3 35555 568899999999 79999999999997543
Q ss_pred cCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 306 YREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+..|..+|+.+|.+|++..
T Consensus 366 -------~~i~~a~~~g~~~a~~i~~~l 386 (456)
T 1lqt_A 366 -------GVIGTNKKDAQDTVDTLIKNL 386 (456)
T ss_dssp -------SCTTHHHHHHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHHHHHHH
Confidence 234567889999999998764
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-32 Score=264.81 Aligned_cols=313 Identities=15% Similarity=0.071 Sum_probs=196.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-----CCCCcEEEEeCCCCCCCCCCccCccccC----------CCCCCCCCCcc--
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG-----VKPGELAIISKEAVAPYERPALSKAYLF----------PEGTARLPGFH-- 67 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g-----~~~~~V~vie~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-- 67 (434)
++||+|||||+||+++|..|++.| .+ |+|||+++...|....+...... ...+.....+.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~---v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~ 106 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALE---VLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNY 106 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCC---EEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCccc---EEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHh
Confidence 469999999999999999999998 66 99999998766543221110000 00000000000
Q ss_pred -cccC--------CCC---C----CCChhhHhhcCcEEEcCCeeEEEECC---CC----EEEccCCc----EEEcceEEE
Q 013914 68 -VCVG--------SGG---E----RLLPEWYKEKGIELILSTEIVRADIA---SK----TLLSATGL----IFKYQILVI 120 (434)
Q Consensus 68 -~~~~--------~~~---~----~~~~~~~~~~~v~~~~~~~v~~i~~~---~~----~v~~~~~~----~~~~d~lvl 120 (434)
...+ ... . ..+....++.++++..+++|+.++.+ .+ +|.+.++. ++.||+||+
T Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVl 186 (463)
T 3s5w_A 107 LHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVV 186 (463)
T ss_dssp HHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEE
T ss_pred hhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEE
Confidence 0000 000 0 01112223457889999889999876 43 56666664 899999999
Q ss_pred ecCCCcccccCCCCCCCCCC-CeEEecCHHH-HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCC
Q 013914 121 ATGSTVLRLTDFGVEGADAK-NIFYLREIDD-ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEP 196 (434)
Q Consensus 121 AtG~~~~~~~~~~~~g~~~~-~v~~~~~~~~-~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~ 196 (434)
|||+.|..|+. +++.... .+++.....+ ...+.... ..+++++|||+|.+|+|+|..|.+. +.+|+++.+.+
T Consensus 187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~ 262 (463)
T 3s5w_A 187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSS--GKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRAS 262 (463)
T ss_dssp CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC---------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcc--cCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 99998887763 3333333 5665544333 22221111 1478999999999999999999999 99999999998
Q ss_pred ccCCcc--------C-----------CHHHHHHHHHHHHh--------------------------cCcEEEcCCeEEEE
Q 013914 197 WCMPRL--------F-----------TADIAAFYEGYYAN--------------------------KGIKIIKGTVAVGF 231 (434)
Q Consensus 197 ~~~~~~--------~-----------~~~~~~~~~~~l~~--------------------------~GV~~~~~~~v~~i 231 (434)
.+++.. + +++....+.+.+.. .||++++++.|+++
T Consensus 263 ~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v 342 (463)
T 3s5w_A 263 ALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERA 342 (463)
T ss_dssp SCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEE
T ss_pred CCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEE
Confidence 775521 1 22222222222222 69999999999999
Q ss_pred EecCCCcEEEEEeC---CCcE--EECCEEEEcccCccC--hhhhhccccccCCcEEeCCCCCCC-----CCcEEEecccc
Q 013914 232 TTNADGEVKEVKLK---DGRT--LEADIVVVGVGGRPL--ISLFKGQVAENKGGIETDDFFKTS-----ADDVYAVGDVA 299 (434)
Q Consensus 232 ~~~~~g~v~~v~~~---~g~~--~~~D~vi~a~G~~p~--~~~~~~~~~~~~g~i~vd~~~~t~-----~~~iya~GD~~ 299 (434)
..++++ ..+.+. +|+. +++|.||+|+|++|+ .+++....... |++.||+++|+. .|+|||+|||.
T Consensus 343 ~~~~~~--~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~ 419 (463)
T 3s5w_A 343 TATAQG--IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQ 419 (463)
T ss_dssp EEETTE--EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCH
T ss_pred EecCCE--EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCc
Confidence 873333 456665 6754 899999999999999 45543211112 899999999973 56799999998
Q ss_pred cccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
...... .+ .....|.+++.++...+...
T Consensus 420 ~~~g~~--~~---~l~~~a~r~~~i~~~~~~~~ 447 (463)
T 3s5w_A 420 ASHGLS--DT---LLSVLPVRAEEISGSLYQHL 447 (463)
T ss_dssp HHHCTT--TT---SSTTHHHHHHHHHHHHHHHH
T ss_pred ccCCcC--cc---chhHHHHHHHHHHHHHHhhc
Confidence 754321 11 23345667777665554433
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=257.65 Aligned_cols=285 Identities=15% Similarity=0.156 Sum_probs=195.6
Q ss_pred CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCC----CCC-C-cc-----CccccCCC-------CCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAP----YER-P-AL-----SKAYLFPE-------GTARLP 64 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~----~~~-~-~~-----~~~~~~~~-------~~~~~~ 64 (434)
+||+|||||+||+++|..|++ .|.+..+|+|||+++..+ +.. + +. ....++.. ....++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 776534599999986532 100 0 00 00000000 000111
Q ss_pred CcccccC-----CC------CCCCChhhHhhcCcE--EEcCCeeEEEECCCC----EEEccC---C--cEEEcceEEEec
Q 013914 65 GFHVCVG-----SG------GERLLPEWYKEKGIE--LILSTEIVRADIASK----TLLSAT---G--LIFKYQILVIAT 122 (434)
Q Consensus 65 ~~~~~~~-----~~------~~~~~~~~~~~~~v~--~~~~~~v~~i~~~~~----~v~~~~---~--~~~~~d~lvlAt 122 (434)
++..... .. ....+.+++++.+++ +..++.|+.++.... +|.+.+ + .++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 1111000 00 001122334456777 888889999987655 566544 3 578999999999
Q ss_pred C--CCcccccCCCCCCCCC--CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 123 G--STVLRLTDFGVEGADA--KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 123 G--~~~~~~~~~~~~g~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
| +.|+.|+ ++|.+. ..+++..++.+... ..+++|+|||+|.+|+|+|..|.+.|.+|+++.+.+.+
T Consensus 163 G~~s~p~~p~---ipG~~~~~g~~~hs~~~~~~~~-------~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~ 232 (464)
T 2xve_A 163 GHFSTPYVPE---FEGFEKFGGRILHAHDFRDALE-------FKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP 232 (464)
T ss_dssp CSSSSBCCCC---CBTTTTCCSEEEEGGGCCCGGG-------GTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred CCCCCCccCC---CCCcccCCceEEehhhhCCHhH-------cCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence 9 8888887 455432 23455443332211 25899999999999999999999999999999998887
Q ss_pred CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc--cccccC
Q 013914 199 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG--QVAENK 276 (434)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~--~~~~~~ 276 (434)
++..++ .||+++ ..|++++. + .|.+.+|+++++|.||+|||++|+.+++.. ++..++
T Consensus 233 ~~~~~~-------------~~V~~~--~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~ 291 (464)
T 2xve_A 233 MGYKWP-------------ENWDER--PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNN 291 (464)
T ss_dssp CCCCCC-------------TTEEEC--SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCS
T ss_pred CCCCCC-------------CceEEc--CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCC
Confidence 764322 478887 67888853 2 478899999999999999999999988764 445444
Q ss_pred C-cEEeCCC---CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 277 G-GIETDDF---FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 277 g-~i~vd~~---~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+ .+ ++.+ ++|+.|+||++|||+.. ..+..|..||+.+++++.+..
T Consensus 292 ~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-----------~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 292 RLWP-LNLYKGVVWEDNPKFFYIGMQDQW-----------YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp SSCC-SSEETTTEESSSTTEEECSCSCCS-----------SCHHHHHHHHHHHHHHHTTSS
T ss_pred Cccc-ccccceEecCCCCCEEEEeCcccc-----------cchHHHHHHHHHHHHHHcCCC
Confidence 4 44 4433 56899999999998863 356778899999999998753
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=263.12 Aligned_cols=257 Identities=15% Similarity=0.107 Sum_probs=190.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
.++||+|||||+||+++|.+|++. .+ |+|||+++..++.....+... ..++. . ...+...+.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~---V~vie~~~~~GG~~~~~~~~~------~g~~~-~-------~~~~~~~l~ 168 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LT---VALIEERGWLGGDMWLKGIKQ------EGFNK-D-------SRKVVEELV 168 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CC---EEEECTTSSSSCSGGGTCSEE------TTTTE-E-------HHHHHHHHH
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CC---EEEEeCCCCCCCeeecccccc------CCCCC-C-------HHHHHHHHH
Confidence 357999999999999999999998 65 999999976543321111100 00110 0 001111111
Q ss_pred ---hcCcEEEcCCeeEEEECCCCEEEc---cCCc--EEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHH
Q 013914 84 ---EKGIELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLV 155 (434)
Q Consensus 84 ---~~~v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~ 155 (434)
..+++++.++.+..++.+.+.+.. .+++ .+.||++|+|||+.|+.|+ ++|.+.+++++.. ++..+.
T Consensus 169 ~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~---~~g~~~~gv~~~~---~~~~~~ 242 (493)
T 1y56_A 169 GKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTML---FENNDMPGVFRRD---FALEVM 242 (493)
T ss_dssp HTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCC---CTTTTSTTEEEHH---HHHHHH
T ss_pred HHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCC---CCCCCCCCEEEcH---HHHHHH
Confidence 458999998888888877764432 3443 6899999999999998777 6777777887643 344333
Q ss_pred HHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
+.....++++++|+|+|++++| +.+++.||++++++.|.++..
T Consensus 243 ~~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~~~~v~~i~~-- 285 (493)
T 1y56_A 243 NVWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVHIPNVKRVEG-- 285 (493)
T ss_dssp HTSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEECSSEEEEEC--
T ss_pred HhcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEeCCeeEEEec--
Confidence 3222235689999999999988 456788999999999999986
Q ss_pred CCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc-cccc---cCCcEE-eCCCCCCCCCcEEEecccccccccccCcce
Q 013914 236 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG-QVAE---NKGGIE-TDDFFKTSADDVYAVGDVATFPMKLYREMR 310 (434)
Q Consensus 236 ~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~-~~~~---~~g~i~-vd~~~~t~~~~iya~GD~~~~~~~~~~~~~ 310 (434)
++.+..+.+.+|+++++|.|++|+|++|+++++.. ++.. ++|++. ||+++| +.|+|||+|||++.
T Consensus 286 ~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~--------- 355 (493)
T 1y56_A 286 NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSI--------- 355 (493)
T ss_dssp SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCC---------
T ss_pred CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCc---------
Confidence 34456778889999999999999999999988754 4433 467777 899999 99999999999975
Q ss_pred ecccHHHHHHHHHHHHHHHhccC
Q 013914 311 RVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 311 ~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.++..|..+|+.||.+|.+..
T Consensus 356 --~~~~~A~~~g~~aa~~i~~~l 376 (493)
T 1y56_A 356 --KPHYANYLEGKLVGAYILKEF 376 (493)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHT
T ss_pred --cCHHHHHHHHHHHHHHHHHHc
Confidence 457789999999999998764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-32 Score=277.73 Aligned_cols=298 Identities=17% Similarity=0.185 Sum_probs=196.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.+||+|||||+||++||..|+++|++ |+|||+++..... +... ..+|++.. .....+++..
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~---Vtlie~~~~~GG~-------~~~~---~~~pg~~~------~~~~~~~~~~ 449 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQV---AALPGLGE------WSYHRDYRET 449 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHH---TTSTTCGG------GHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEeCCCCcCCe-------eeec---ccCCChHH------HHHHHHHHHH
Confidence 57999999999999999999999986 9999998653211 0000 11121110 0011111111
Q ss_pred cCcEEE--cCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc-----ccCCCCCCCC--CCCeEEecCHHHHHHHH
Q 013914 85 KGIELI--LSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-----LTDFGVEGAD--AKNIFYLREIDDADKLV 155 (434)
Q Consensus 85 ~~v~~~--~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-----~~~~~~~g~~--~~~v~~~~~~~~~~~~~ 155 (434)
.++.+ .......+.. ++.+.+.++..+.||+||+|||+.|+. |..+.++|.+ ..++++. .++..
T Consensus 450 -~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~~l~-- 522 (729)
T 1o94_A 450 -QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQVMD-- 522 (729)
T ss_dssp -HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HHHHH--
T ss_pred -HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HHHhc--
Confidence 01100 0011222222 233444455568899999999998532 2222367765 5567643 23221
Q ss_pred HHHHhCCCCcEEEEC--CCHHHHHHHHHHHhCCCeEEEEccCCccCCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 156 EAIKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 156 ~~l~~~~~~~v~ViG--~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
. ....+++++||| +|++|+|+|..|.+.|.+|+++++.+ +++. .++.. ...+.+.+++.||++++++.++++.
T Consensus 523 ~--~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~~~~v~~i~ 598 (729)
T 1o94_A 523 G--KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELGDHFCSRIE 598 (729)
T ss_dssp C--CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred C--CCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEcCcEEEEEE
Confidence 1 112467999999 99999999999999999999999988 5442 12222 4567788899999999999999997
Q ss_pred ecCCCcEEEEEe--CCC-cE------------------EECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCc
Q 013914 233 TNADGEVKEVKL--KDG-RT------------------LEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADD 291 (434)
Q Consensus 233 ~~~~g~v~~v~~--~~g-~~------------------~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~ 291 (434)
. ++ ..+.. .++ ++ +++|.||+|+|++|+++++.. +. ..+|+++||++|+
T Consensus 599 ~--~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~-----~~vd~~~~t~~~~ 668 (729)
T 1o94_A 599 P--GR--MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LK-----ARESEWAENDIKG 668 (729)
T ss_dssp T--TE--EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HH-----HTGGGTGGGTCCE
T ss_pred C--Ce--EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hh-----hhcccccccCCCC
Confidence 5 33 12222 233 22 899999999999999987752 11 1268899999999
Q ss_pred EEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCCCCcccCCCCCCeeEEeccCceeEEee
Q 013914 292 VYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYG 360 (434)
Q Consensus 292 iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g 360 (434)
|||+|||+.. ..+..|..+|+.||.+|.+.. .+..+|+ ++..+++....+|
T Consensus 669 VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~l------~~~~~p~-~~~~~~~~~~~~~ 719 (729)
T 1o94_A 669 IYLIGDAEAP-----------RLIADATFTGHRVAREIEEAN------PQIAIPY-KRETIAWGTPHMP 719 (729)
T ss_dssp EEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSSC------TTSCCCC-CCCCCCTTCCSST
T ss_pred eEEEeCccch-----------hhHHHHHHHHHHHHHHhhhhc------ccCCCCe-eeecccCcccccC
Confidence 9999999863 457789999999999998754 3445565 5666666554444
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-32 Score=276.72 Aligned_cols=284 Identities=18% Similarity=0.171 Sum_probs=199.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++||+|||||+||++||..|+++|++ |+|||+++..+.. +... ...+++... ..........+.
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~~G~~---V~liE~~~~~GG~-------~~~~---~~~p~~~~~--~~~~~~~~~~~~ 454 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGVRGYD---VVLAEAGRDLGGR-------VTQE---SALPGLSAW--GRVKEYREAVLA 454 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSCTH-------HHHH---HTSTTCGGG--GHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCCCCCE-------eeec---cCCCchhHH--HHHHHHHHHHHH
Confidence 458999999999999999999999987 9999998653311 0000 011111100 000012233444
Q ss_pred hc-CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc-----ccCCCCCCCCCCCeEEecCHHHHHHHHHH
Q 013914 84 EK-GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR-----LTDFGVEGADAKNIFYLREIDDADKLVEA 157 (434)
Q Consensus 84 ~~-~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~-----~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 157 (434)
+. +++++.++.+ ...+..++.||+||+|||+.|+. |..+.++|.+..++++. .+....
T Consensus 455 ~~~gv~~~~~~~v----------~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~~l~~--- 518 (690)
T 3k30_A 455 ELPNVEIYRESPM----------TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DDLFAG--- 518 (690)
T ss_dssp TCTTEEEESSCCC----------CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HHHHTT---
T ss_pred HcCCCEEEECCee----------cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HHHhCC---
Confidence 55 7888887543 22334457899999999998542 11222677665555533 222211
Q ss_pred HHhCCCCcEEEEC--CCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 158 IKAKKNGKAVVVG--GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 158 l~~~~~~~v~ViG--~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
....+++++||| +|++|+|+|..|.+.|.+|+++++.+.+++...++.....+.+.+++.||+++++++|++++.
T Consensus 519 -~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-- 595 (690)
T 3k30_A 519 -RLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGA-- 595 (690)
T ss_dssp -CCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEET--
T ss_pred -CCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEEC--
Confidence 112467899999 999999999999999999999999988877544466678888999999999999999999975
Q ss_pred CCcEEEEE---eCCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceec
Q 013914 236 DGEVKEVK---LKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRV 312 (434)
Q Consensus 236 ~g~v~~v~---~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~ 312 (434)
++ ..+. ..+++++++|.||+|+|++|+++++..... .+. +|+.|+|||+|||+..
T Consensus 596 ~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~--~~~-------~t~~~~VyaiGD~~~~----------- 653 (690)
T 3k30_A 596 GG--VTVRDTYASIERELECDAVVMVTARLPREELYLDLVA--RRD-------AGEIASVRGIGDAWAP----------- 653 (690)
T ss_dssp TE--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHH--HHH-------HTSCSEEEECGGGTSC-----------
T ss_pred Ce--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhh--hhc-------ccCCCCEEEEeCCCch-----------
Confidence 33 2233 235568999999999999999987753111 111 7899999999999974
Q ss_pred ccHHHHHHHHHHHHHHHhccCCCCcccCCCC
Q 013914 313 EHVDHARKSAEQAVKTIMATEGGKTVTGYDY 343 (434)
Q Consensus 313 ~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~ 343 (434)
..+..|..||+.||.+|.+...++...+|..
T Consensus 654 ~~~~~A~~~g~~aa~~i~~~l~g~~~~p~~~ 684 (690)
T 3k30_A 654 GTIAAAVWSGRRAAEEFDAVLPSNDEVPFRR 684 (690)
T ss_dssp BCHHHHHHHHHHHHHHTTCCCCCTTSCSSCC
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCCCCcCh
Confidence 3566699999999999999877765555554
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=247.39 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=191.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCCccCc---------------cccC--------C
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERPALSK---------------AYLF--------P 57 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~~~~~---------------~~~~--------~ 57 (434)
++.+||+|||||++|+++|..|++.|. ..+|+|||+++..+ |....... .+.. .
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 457899999999999999999999987 12399999986431 11100000 0000 0
Q ss_pred C----CCC-------CCCCcccccCCCCC-------CCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccC---Cc---
Q 013914 58 E----GTA-------RLPGFHVCVGSGGE-------RLLPEWYKEKGIELILSTEIVRADIASK--TLLSAT---GL--- 111 (434)
Q Consensus 58 ~----~~~-------~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~---~~--- 111 (434)
. ... .++++......... ..+.++.++.+..+..++.|+.++.... +|.+.+ |.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0 000 00000000000000 0112223334667888889999987665 455554 55
Q ss_pred EEEcceEEEecCC--CcccccCCCCCCCC------CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHH
Q 013914 112 IFKYQILVIATGS--TVLRLTDFGVEGAD------AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALK 183 (434)
Q Consensus 112 ~~~~d~lvlAtG~--~~~~~~~~~~~g~~------~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~ 183 (434)
++.||+||+|||. .|+.|+ ++|.+ ...+++++++.+...+ .+++|+|||+|++|+|+|..|.
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~---i~G~~~~~~~~~g~v~~~~~~~~~~~~-------~~k~VvVvG~G~sg~e~A~~l~ 232 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPN---IKGLDEYAKAVPGSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLT 232 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCC---CBTHHHHHHHSTTSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHT
T ss_pred EEEeCEEEECCCCCCCCCCCC---CCChhhhhccCCccEEEecccCChhhc-------CCCEEEEEccCcCHHHHHHHHH
Confidence 7999999999998 777776 46543 1346665544333221 5799999999999999999999
Q ss_pred hCCCe-EEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE-EECCEEEEcccC
Q 013914 184 INNID-VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT-LEADIVVVGVGG 261 (434)
Q Consensus 184 ~~g~~-v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~-~~~D~vi~a~G~ 261 (434)
+.+.+ |+++.+.+.+ +++.||.+ ...|+++.. ++ ..|.+.||++ +++|.||+|+|+
T Consensus 233 ~~~~~~V~l~~r~~~~----------------l~~~~i~~--~~~v~~~~~--~~--~~v~~~dG~~~~~~D~vi~atG~ 290 (447)
T 2gv8_A 233 PVAKHPIYQSLLGGGD----------------IQNESLQQ--VPEITKFDP--TT--REIYLKGGKVLSNIDRVIYCTGY 290 (447)
T ss_dssp TTSCSSEEEECTTCCS----------------CBCSSEEE--ECCEEEEET--TT--TEEEETTTEEECCCSEEEECCCB
T ss_pred HHhCCcEEEEeCCCCc----------------CCCCCeEE--ecCeEEEec--CC--CEEEECCCCEeccCCEEEECCCC
Confidence 99999 9999988655 34567764 467888864 22 2578899976 689999999999
Q ss_pred ccChhh-----hhc-cccc-cCCcEEeCCCCC---CCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 262 RPLISL-----FKG-QVAE-NKGGIETDDFFK---TSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 262 ~p~~~~-----~~~-~~~~-~~g~i~vd~~~~---t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
+|++++ ++. .... .++.+.++.+.+ +++|++|++||+... ..+..|..||+.+|+++.+
T Consensus 291 ~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~-----------~~~~~a~~qa~~~a~~~~g 359 (447)
T 2gv8_A 291 LYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV-----------VPFPTSQAQAAFLARVWSG 359 (447)
T ss_dssp CCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS-----------CHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccc-----------cCchHHHHHHHHHHHHHcC
Confidence 999988 543 1111 234455555555 589999999999764 3467788999999999987
Q ss_pred cC
Q 013914 332 TE 333 (434)
Q Consensus 332 ~~ 333 (434)
..
T Consensus 360 ~~ 361 (447)
T 2gv8_A 360 RL 361 (447)
T ss_dssp SS
T ss_pred CC
Confidence 53
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=258.43 Aligned_cols=260 Identities=18% Similarity=0.217 Sum_probs=186.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+++||+|||||+||++||..|++.|++ |+|||+++..+.. ..+.. .+++..... .....+...++
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~---V~lie~~~~~gg~-~~~~~---------~~~~~~~~~--~~~~~~~~~~~ 436 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-FNIAK---------QIPGKEEFY--ETLRYYRRMIE 436 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-HHHHT---------TSTTCTTHH--HHHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCCCCCCe-eeccc---------cCCCHHHHH--HHHHHHHHHHH
Confidence 358999999999999999999998876 9999998754321 00000 111110000 00012334556
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEE-EcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIF-KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~-~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
+.+++++.++.+.. ..+ .||+||+|||++|+.|+ ++|.+..++++.. +... . ....
T Consensus 437 ~~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~---i~G~~~~~v~~~~---~~l~--~--~~~~ 493 (671)
T 1ps9_A 437 VTGVTLKLNHTVTA-------------DQLQAFDETILASGIVPRTPP---IDGIDHPKVLSYL---DVLR--D--KAPV 493 (671)
T ss_dssp HHTCEEEESCCCCS-------------SSSCCSSEEEECCCEEECCCC---CBTTTSTTEEEHH---HHHT--S--CCCC
T ss_pred HcCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcCCCC---CCCCCCCcEeeHH---HHhh--C--CCCC
Confidence 77999998865431 113 89999999999998877 5776656777542 2111 0 1125
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-------------------------------------eEEEEccCCccCCccCCH
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-------------------------------------DVSMVYPEPWCMPRLFTA 205 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-------------------------------------~v~lv~~~~~~~~~~~~~ 205 (434)
+++++|||+|++|+|+|..|.+.|. +|+++++.+..+...+++
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~ 573 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGK 573 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCT
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhcccccc
Confidence 7899999999999999999998773 566777766666555677
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhccccccCCcEEeCC
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD 283 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~ 283 (434)
.....+.+.+++.||++++++++++++. ++ ..++ .+| +++++|.||+|+|++||+++++..
T Consensus 574 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~--v~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l------------ 636 (671)
T 1ps9_A 574 TTGWIHRTTLLSRGVKMIPGVSYQKIDD--DG--LHVV-INGETQVLAVDNVVICAGQEPNRALAQPL------------ 636 (671)
T ss_dssp TTHHHHHHHHHHTTCEEECSCEEEEEET--TE--EEEE-ETTEEEEECCSEEEECCCEEECCTTHHHH------------
T ss_pred ccHHHHHHHHHhcCCEEEeCcEEEEEeC--Ce--EEEe-cCCeEEEEeCCEEEECCCccccHHHHHHH------------
Confidence 7778888999999999999999999974 33 2232 577 579999999999999999876521
Q ss_pred CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHH
Q 013914 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 329 (434)
Q Consensus 284 ~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i 329 (434)
+...++||++|||+.... ..+..|++||..+|.||
T Consensus 637 --~~~g~~v~aiGD~~~~~~---------~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 637 --IDSGKTVHLIGGCDVAME---------LDARRAIAQGTRLALEI 671 (671)
T ss_dssp --HTTTCCEEECGGGTCCSS---------CCHHHHHHHHHHHHHHC
T ss_pred --HhcCCCEEEECCcCccCc---------hhHHHHHHHHHHHHHhC
Confidence 122478999999998643 35888999999999885
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=244.20 Aligned_cols=297 Identities=16% Similarity=0.220 Sum_probs=187.5
Q ss_pred CCcEEEECCCHHHHHHHHHHH-HcCCCCCcEEEEeCCCCCC-------CCCCc--c-CccccCCCCCC--CCCCccc--c
Q 013914 5 SFKYVILGGGVSAGYAAREFA-KQGVKPGELAIISKEAVAP-------YERPA--L-SKAYLFPEGTA--RLPGFHV--C 69 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~-~~g~~~~~V~vie~~~~~~-------~~~~~--~-~~~~~~~~~~~--~~~~~~~--~ 69 (434)
++||+|||||++|+++|..|+ +.|.+ |+|||+++..+ |..+. . +..+....... ..+.+.. .
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~---v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 84 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLT---TVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYI 84 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCC---EEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCC
Confidence 589999999999999999999 88876 99999976432 11100 0 00000000000 0000000 0
Q ss_pred cCCCCCCCChhhHhhcCc--EEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecC--CCcccccCCCCCCCCC--
Q 013914 70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADA-- 139 (434)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~-- 139 (434)
........+....++.++ ++..++.|+.++.+.+ +|.+.+|+++.||+||+||| +.|+.|++ +|.+.
T Consensus 85 ~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i---pG~~~f~ 161 (540)
T 3gwf_A 85 TQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNL---PGLDTFE 161 (540)
T ss_dssp EHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCC---TTGGGCC
T ss_pred CHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCC---CCccccC
Confidence 000001122344556677 7888889999987766 67888888899999999999 68888774 55431
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-CCc---cCCHHHHHHHH---
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-MPR---LFTADIAAFYE--- 212 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~-~~~---~~~~~~~~~~~--- 212 (434)
..+++.....+. ....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+ ++. .+.+...+.++
T Consensus 162 g~~~~~~~~~~~-------~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~ 234 (540)
T 3gwf_A 162 GETIHTAAWPEG-------KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADY 234 (540)
T ss_dssp SEEEEGGGCCSS-------CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTH
T ss_pred CCEEEeecCCCc-------cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhcc
Confidence 223332221111 0125799999999999999999999999999999999883 322 12222222111
Q ss_pred ----------------------------------------------------------------------HH--------
Q 013914 213 ----------------------------------------------------------------------GY-------- 214 (434)
Q Consensus 213 ----------------------------------------------------------------------~~-------- 214 (434)
+.
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp 314 (540)
T 3gwf_A 235 DRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDP 314 (540)
T ss_dssp HHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCH
Confidence 00
Q ss_pred -------------------------HHhcCcEEEc--CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013914 215 -------------------------YANKGIKIIK--GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 215 -------------------------l~~~GV~~~~--~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
+.+.+|+++. ...|++++. .+|.++||+++++|.||+|||+++++..
T Consensus 315 ~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~------~gv~~~dG~~~~~DvIV~ATGf~~~~~~ 388 (540)
T 3gwf_A 315 ETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA------KGVVTEDGVLHELDVLVFATGFDAVDGN 388 (540)
T ss_dssp HHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECS------SEEEETTCCEEECSEEEECCCBSCSSHH
T ss_pred HHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEec------CeEEcCCCCEEECCEEEECCccCccccC
Confidence 1144788875 678888865 3588999999999999999999998854
Q ss_pred hhc-cccccCCcEEeCC--------C--CCC-CCCcEEEe-cccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 268 FKG-QVAENKGGIETDD--------F--FKT-SADDVYAV-GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 268 ~~~-~~~~~~g~i~vd~--------~--~~t-~~~~iya~-GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
+.. .+. ..+++.+++ + +.+ +.||+|.+ |..+. .. .....+..|++.+++.|..
T Consensus 389 ~~~~~i~-g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~--~~--------s~~~~~e~q~~~i~~~i~~ 454 (540)
T 3gwf_A 389 YRRIEIR-GRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP--FT--------NLPPSIETQVEWISDTIGY 454 (540)
T ss_dssp HHTSEEE-CGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB--CS--------CHHHHHHHHHHHHHHHHHH
T ss_pred cCcceEE-CCCCcCHHHhhccChhhccccccCCCCceEEEecCCCC--Cc--------cHHHHHHHHHHHHHHHHHH
Confidence 422 211 122233332 2 233 78999999 76654 11 2345667788888877653
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=230.02 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=119.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCC--cc-CccccCCCCCC--CCCCccc--c
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERP--AL-SKAYLFPEGTA--RLPGFHV--C 69 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~--~~-~~~~~~~~~~~--~~~~~~~--~ 69 (434)
.++||||||||++|+++|..|++.|.+ |+|||+++..+ |..+ .. +..+....... ..+.+.. .
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLT---VRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCC
Confidence 357999999999999999999999886 99999976432 1110 00 00000000000 0000000 0
Q ss_pred cCCCCCCCChhhHhhcCc--EEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecC--CCcccccCCCCCCCCC--
Q 013914 70 VGSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADA-- 139 (434)
Q Consensus 70 ~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~-- 139 (434)
........+....++.++ ++..++.|+.++.+.+ +|.+.+|+++.||+||+||| +.|+.|++ +|.+.
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~i---pG~~~f~ 173 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAF---DGLDRFT 173 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCC---TTGGGCC
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCC---CCcccCC
Confidence 000001122334456676 7888899999987766 68888888999999999999 78888874 55431
Q ss_pred CCeEEecCHH-HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 140 KNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 140 ~~v~~~~~~~-~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..+++..... +... ..+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+
T Consensus 174 g~~~~~~~~~~~~~~-------~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 174 GDIVHTARWPHDGVD-------FTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY 226 (549)
T ss_dssp SEEEEGGGCCTTCCC-------CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred CceEEeccccccccc-------cCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence 2233332211 1111 15799999999999999999999999999999999874
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-27 Score=232.53 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCC--CccCccccCCC-CCCCCCCccccc---
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YER--PALSKAYLFPE-GTARLPGFHVCV--- 70 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~--~~~~~~~~~~~-~~~~~~~~~~~~--- 70 (434)
+++||||||||++|+++|..|++.|.+ |+|||+++..+ |.. +......+... .......+.+..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~---v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQAGMK---VLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCC
Confidence 458999999999999999999999886 99999986432 110 00000000000 000000000000
Q ss_pred -CCCCCCCChhhHhhcCc--EEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecC--CCcccccCCCCCCCCCCC
Q 013914 71 -GSGGERLLPEWYKEKGI--ELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGADAKN 141 (434)
Q Consensus 71 -~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~~~~~ 141 (434)
............++.++ ++..++.|+.++.+.. .|.+.+|+++.||+||+||| +.|+.|++++++......
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 00001122333445566 7888889999987665 68888888999999999999 788888743332222112
Q ss_pred eEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 142 IFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 142 v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+++.....+.....+ .....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+.+
T Consensus 165 ~h~~~~~~~~~~~~~-~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~ 220 (545)
T 3uox_A 165 FHSSRWPTDAEGAPK-GVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW 220 (545)
T ss_dssp EEGGGCCBCTTSCBS-CCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred EEccccccccccccc-ccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence 222211111000000 00115789999999999999999999999999999999874
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=220.67 Aligned_cols=295 Identities=14% Similarity=0.182 Sum_probs=180.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC-------CCCCccCccccCCCCCCCCC---C----cccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP-------YERPALSKAYLFPEGTARLP---G----FHVC 69 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~----~~~~ 69 (434)
..+||+|||||++|+++|..|++.|++ |+|||+++..+ |.... ...+.....+. . +.+.
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~---v~iiE~~~~~GG~w~~~~~pg~~----~d~~~~~~~~~f~~~~~~~~~~~ 87 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGAR----CDIESIEYCYSFSEEVLQEWNWT 87 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTCB----CSSCTTTSSCCSCHHHHHHCCCC
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcccccCCCcee----ecccccccccccChhhhhccCcc
Confidence 458999999999999999999999986 99999986532 11100 00000000000 0 0000
Q ss_pred cCC----CCCCCChhhHhhcC--cEEEcCCeeEEEECCCC----EEEccCCcEEEcceEEEecC--CCcccccCCCCCCC
Q 013914 70 VGS----GGERLLPEWYKEKG--IELILSTEIVRADIASK----TLLSATGLIFKYQILVIATG--STVLRLTDFGVEGA 137 (434)
Q Consensus 70 ~~~----~~~~~~~~~~~~~~--v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~lvlAtG--~~~~~~~~~~~~g~ 137 (434)
... .....+....++.+ .++..+++|.+++.+.. +|.+.+|+++.+|+||+||| +.|+.|+ ++|.
T Consensus 88 ~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~---i~G~ 164 (542)
T 1w4x_A 88 ERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPN---FPGL 164 (542)
T ss_dssp BSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCC---CTTG
T ss_pred cccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCC---CCCc
Confidence 000 00011112233444 56888889999876543 56777888899999999999 5677776 4554
Q ss_pred C-CCC-eEEecCHH-HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-Cc---cCCHHHHH-
Q 013914 138 D-AKN-IFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-PR---LFTADIAA- 209 (434)
Q Consensus 138 ~-~~~-v~~~~~~~-~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-~~---~~~~~~~~- 209 (434)
+ ..+ +++..... +.. ...+++++|||+|.+|+|++..+.+.+.+|+++.+.+.+. +. .+.++..+
T Consensus 165 ~~f~G~~~hs~~~~~~~~-------~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~ 237 (542)
T 1w4x_A 165 KDFAGNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLAD 237 (542)
T ss_dssp GGCCSEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHH
T ss_pred ccCCCceEECCCCCCchh-------ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHH
Confidence 3 122 23222111 100 1257999999999999999999999999999999887652 21 01111110
Q ss_pred ----------------------------------------------------------------------HHHHHH----
Q 013914 210 ----------------------------------------------------------------------FYEGYY---- 215 (434)
Q Consensus 210 ----------------------------------------------------------------------~~~~~l---- 215 (434)
.+.+.+
T Consensus 238 ~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (542)
T 1w4x_A 238 LKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTV 317 (542)
T ss_dssp HHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHc
Confidence 011111
Q ss_pred -------------------------------HhcCcEEE--cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 216 -------------------------------ANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 216 -------------------------------~~~GV~~~--~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+.+|+++ .+..|++++. .+|.++| +++++|.||+|||++
T Consensus 318 ~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~------~gv~~~d-~~~~~D~ii~atG~~ 390 (542)
T 1w4x_A 318 RDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITP------RGVRTSE-REYELDSLVLATGFD 390 (542)
T ss_dssp SSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECS------SEEEESS-CEEECSEEEECCCCC
T ss_pred CCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcC------CeEEeCC-eEEecCEEEEcCCcc
Confidence 11246665 3566777754 3578888 899999999999999
Q ss_pred cChhhhhc-cccccCCcEEeCCC----------CCC-CCCcEEEe-cccccccccccCcceecccH-HHHHHHHHHHHHH
Q 013914 263 PLISLFKG-QVAENKGGIETDDF----------FKT-SADDVYAV-GDVATFPMKLYREMRRVEHV-DHARKSAEQAVKT 328 (434)
Q Consensus 263 p~~~~~~~-~~~~~~g~i~vd~~----------~~t-~~~~iya~-GD~~~~~~~~~~~~~~~~~~-~~A~~~g~~aa~~ 328 (434)
+++.++.. .+.-. +++.+++. +.+ +.||+|++ |+.+.... +++ ..+..|++.++++
T Consensus 391 ~~~~~~~~~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~---------~~~~~~~e~q~~~ia~~ 460 (542)
T 1w4x_A 391 ALTGALFKIDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSAL---------SNMLVSIEQHVEWVTDH 460 (542)
T ss_dssp CTTHHHHTSEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGG---------SCHHHHHHHHHHHHHHH
T ss_pred ccccCcCceeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCccc---------ccHHHHHHHHHHHHHHH
Confidence 98776543 22223 34444432 222 56777776 77653211 344 7788999999999
Q ss_pred Hhcc
Q 013914 329 IMAT 332 (434)
Q Consensus 329 i~~~ 332 (434)
|...
T Consensus 461 i~~~ 464 (542)
T 1w4x_A 461 IAYM 464 (542)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=176.37 Aligned_cols=158 Identities=19% Similarity=0.163 Sum_probs=131.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc--------cC-----CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR--------LF-----TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~--------~~-----~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+++|||+|++|+++|..|.+.|.+|+++++.+..+.+ .+ ++++.+.+.+.+++.||+++++ +|+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 6899999999999999999999999999998766531 12 4788999999999999999999 99999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
+.++++ ..+++++| ++++|.||+|+|.+|+. .-..++..++|.|.||+++||+.|+|||+|||+..+.
T Consensus 82 ~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~~-~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~-------- 149 (180)
T 2ywl_A 82 RDMGGV--FEVETEEG-VEKAERLLLCTHKDPTL-PSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVP-------- 149 (180)
T ss_dssp EECSSS--EEEECSSC-EEEEEEEEECCTTCCHH-HHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCS--------
T ss_pred EEcCCE--EEEEECCC-EEEECEEEECCCCCCCc-cccCCCCccCceEEeCCCCCcCCCCEEEeecccCcch--------
Confidence 874333 56788888 89999999999999854 1123454557889999999999999999999998753
Q ss_pred cccHHHHHHHHHHHHHHHhccCCCC
Q 013914 312 VEHVDHARKSAEQAVKTIMATEGGK 336 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~~~~~ 336 (434)
+++..|..+|+.||.||.+...+.
T Consensus 150 -~~~~~A~~~g~~aa~~i~~~~~~~ 173 (180)
T 2ywl_A 150 -GHAIISAGDGAYVAVHLVSDLRGE 173 (180)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -hhHHHHHHhHHHHHHHHHHHhhhc
Confidence 367889999999999999865443
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-19 Score=173.16 Aligned_cols=288 Identities=13% Similarity=0.086 Sum_probs=163.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC-----------CCcEEEEeCCCCCCCCCCccCccc-c---------CCCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVK-----------PGELAIISKEAVAPYERPALSKAY-L---------FPEGTARL 63 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~-----------~~~V~vie~~~~~~~~~~~~~~~~-~---------~~~~~~~~ 63 (434)
.|||||||+||+||++|..|.+.+.+ ....+.+|+.+.+.|...++..+. + ....+...
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 48999999999999999999886532 123678899877666543321111 0 00000000
Q ss_pred CCc-----------ccccCCC------CCCCChhh-HhhcCcEEEcCCeeEEEECCC----------CEEEccCC-----
Q 013914 64 PGF-----------HVCVGSG------GERLLPEW-YKEKGIELILSTEIVRADIAS----------KTLLSATG----- 110 (434)
Q Consensus 64 ~~~-----------~~~~~~~------~~~~~~~~-~~~~~v~~~~~~~v~~i~~~~----------~~v~~~~~----- 110 (434)
-.| .+..-.. +...+.++ .++.+..+.++++|+++.+.. -+|++.++
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 000 0000000 00111122 233456688888999886532 13444332
Q ss_pred cEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHH--HhCCCCcEEEECCCHHHHHHHHHHHhC--C
Q 013914 111 LIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAI--KAKKNGKAVVVGGGYIGLELSAALKIN--N 186 (434)
Q Consensus 111 ~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l--~~~~~~~v~ViG~g~~~~e~a~~l~~~--g 186 (434)
.++.++.||+|||..|..|.. ... ...+++.....+.. +.+ ....+|+|+|||+|.+|+|++..|.+. +
T Consensus 199 ~~~~ar~vVlatG~~P~iP~~---~~~-~g~v~Hss~y~~~~---~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~ 271 (501)
T 4b63_A 199 SARRTRKVVIAIGGTAKMPSG---LPQ-DPRIIHSSKYCTTL---PALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPN 271 (501)
T ss_dssp EEEEEEEEEECCCCEECCCTT---SCC-CTTEEEGGGHHHHH---HHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTT
T ss_pred EEEEeCEEEECcCCCCCCCCC---CCC-Ccceeeccccccch---hhccccccCCcEEEEECCcHHHHHHHHHHHhcCCC
Confidence 368899999999998887764 332 24577655543321 111 123689999999999999999999864 7
Q ss_pred CeEEEEccCCccCCc--------cCCHHH-------------------------------HHHHHHHH-Hh---------
Q 013914 187 IDVSMVYPEPWCMPR--------LFTADI-------------------------------AAFYEGYY-AN--------- 217 (434)
Q Consensus 187 ~~v~lv~~~~~~~~~--------~~~~~~-------------------------------~~~~~~~l-~~--------- 217 (434)
.+|+++.|.+.+.+. .+.++. .+.+.+.+ ++
T Consensus 272 ~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~ 351 (501)
T 4b63_A 272 SRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQ 351 (501)
T ss_dssp CEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGG
T ss_pred ceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccc
Confidence 899999998765432 111111 11111111 10
Q ss_pred cCcEEEcCCeEEEEEecCC-CcE-----------EEEEeCCCcEEECCEEEEcccCccChh--hhhc--cccc-cCCcEE
Q 013914 218 KGIKIIKGTVAVGFTTNAD-GEV-----------KEVKLKDGRTLEADIVVVGVGGRPLIS--LFKG--QVAE-NKGGIE 280 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~-g~v-----------~~v~~~~g~~~~~D~vi~a~G~~p~~~--~~~~--~~~~-~~g~i~ 280 (434)
....+..+..+..+..... +++ .++.+.+|+++++|.||+|||++|+.. ++.. .+.. .+|.+.
T Consensus 352 ~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~ 431 (501)
T 4b63_A 352 WQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWK 431 (501)
T ss_dssp CSSEEECSEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCC
T ss_pred cceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCee
Confidence 1124555555555543221 111 234567889999999999999998764 2221 2222 567788
Q ss_pred eCCCCCC--------CCCcEEEecccc
Q 013914 281 TDDFFKT--------SADDVYAVGDVA 299 (434)
Q Consensus 281 vd~~~~t--------~~~~iya~GD~~ 299 (434)
|+..++. ..++||+.|-+-
T Consensus 432 v~rdy~~~~~~~~~~~~~~i~~qg~~~ 458 (501)
T 4b63_A 432 PHRDYRVEMDPSKVSSEAGIWLQGCNE 458 (501)
T ss_dssp BCTTSBBCCCTTTBCTTCEEEECSCCH
T ss_pred eCCCcEEeecCCccCCCceEEecCCCc
Confidence 8876553 246799999543
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-20 Score=180.34 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=127.3
Q ss_pred HhhcCcEEEcCCeeEEEECCCCEE---Ecc-CCcEEEcceEEEecCCCcccccCCCC-CCCCCCCeEEecCHHHHHHHHH
Q 013914 82 YKEKGIELILSTEIVRADIASKTL---LSA-TGLIFKYQILVIATGSTVLRLTDFGV-EGADAKNIFYLREIDDADKLVE 156 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v---~~~-~~~~~~~d~lvlAtG~~~~~~~~~~~-~g~~~~~v~~~~~~~~~~~~~~ 156 (434)
+++.|++++.++.+ .+..+...+ ... ++.++.+|.+|+|||+.+..++...- ++... +....+.+.-.
T Consensus 129 ~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tG------dgi~~a~~aGa 201 (472)
T 2e5v_A 129 AREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSSTQSTNIG------DGMAIAFKAGT 201 (472)
T ss_dssp HHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSSCTTCSC------HHHHHHHHTTC
T ss_pred HHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccCCCCCch------HHHHHHHHcCC
Confidence 34579999999889 887666543 322 23357899999999998876553110 11111 00000100000
Q ss_pred HHHhC---CC-CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHH--------HHHHHHHHHHhcCcEEEc
Q 013914 157 AIKAK---KN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTAD--------IAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 157 ~l~~~---~~-~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~--------~~~~~~~~l~~~GV~~~~ 224 (434)
.+... .. ...+++|+| +++++..+...|..+ +..+.++++++ ++++ +.+.+.+.+++.|. +++
T Consensus 202 ~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~l 276 (472)
T 2e5v_A 202 ILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFI 276 (472)
T ss_dssp CEECTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEE
T ss_pred CEeCCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEE
Confidence 00000 01 123445666 888888888899887 78888888865 3433 25666677776663 332
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEcccCccChhhhhcc--ccccCCcEEeCCCCCCCCCcEEEeccccc-
Q 013914 225 GTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVGVGGRPLISLFKGQ--VAENKGGIETDDFFKTSADDVYAVGDVAT- 300 (434)
Q Consensus 225 ~~~v~~i~~~~~g~v~~v~~~~g~~~~-~D~vi~a~G~~p~~~~~~~~--~~~~~g~i~vd~~~~t~~~~iya~GD~~~- 300 (434)
+... + +. +. +.++ .+.++++.|..|+ ++++.. .....|+|.||+++||++|+|||+|||+.
T Consensus 277 d~~~--~----~~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~ 341 (472)
T 2e5v_A 277 DLSK--I----ED------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDS 341 (472)
T ss_dssp ECTT--C----TT------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEEC
T ss_pred eccc--h----HH------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccc
Confidence 2210 0 00 00 1232 3667788899998 655432 11257999999999999999999999998
Q ss_pred ccccccCccee-cccHHHHHHHHHHHHHHHhc
Q 013914 301 FPMKLYREMRR-VEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 301 ~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~ 331 (434)
... +..+. ......+.-.|+.|++++.+
T Consensus 342 ~~h---g~~rl~~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 342 GLH---GANRLASNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp SSS---TTSCCTTHHHHHHHHHHHHGGGTTTS
T ss_pred ccC---CCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 322 21111 02234444556666666544
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=134.92 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=111.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------------cCCcc------CCHHHHHHHHHHHHhc-C
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------------CMPRL------FTADIAAFYEGYYANK-G 219 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-----------------~~~~~------~~~~~~~~~~~~l~~~-G 219 (434)
..++|||+|+.|+++|..|++.|.+|+++++... +...+ ....+.+.+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999998621 11100 1136677888888887 9
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh--------------------hhh----hcccccc
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI--------------------SLF----KGQVAEN 275 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~--------------------~~~----~~~~~~~ 275 (434)
++++ +++|+++.. +++.+..+.+.+|+++++|.||+|+|..++. .+. +.++...
T Consensus 84 v~i~-~~~v~~i~~-~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~ 161 (232)
T 2cul_A 84 LHLF-QATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFV 161 (232)
T ss_dssp EEEE-ECCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEE
T ss_pred cEEE-EeEEEEEEE-eCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEE
Confidence 9999 568999986 3556667888899889999999999984332 221 1122221
Q ss_pred CCc----------------EEeCC------C-CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 276 KGG----------------IETDD------F-FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 276 ~g~----------------i~vd~------~-~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
.+. ..+.. . .+|++|+|||+|||+ .. ..+..|..||+.+|.+|...
T Consensus 162 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~----------g~~~~~~~~g~~~a~~i~~~ 230 (232)
T 2cul_A 162 EREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-RE----------GDYARMSEEGKRLAEHLLHE 230 (232)
T ss_dssp EEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SC----------CCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cC----------ccHHHHHHHHHHHHHHHHhh
Confidence 100 01110 1 126899999999999 43 35677889999999999764
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-16 Score=152.15 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCccCc------cccCCCCCCCCC---
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALSK------AYLFPEGTARLP--- 64 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-------~~~~~~~------~~~~~~~~~~~~--- 64 (434)
|| +++||+|||||++|+++|..|+++|.+ |+|+|+++.... .++.+.. .++.. ......
T Consensus 1 MM-~~~dViIIGgG~aGl~aA~~la~~G~~---V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~-~~~~~~~~l 75 (401)
T 2gqf_A 1 MS-QYSENIIIGAGAAGLFCAAQLAKLGKS---VTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSAL 75 (401)
T ss_dssp CE-EECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHH
T ss_pred CC-CCCCEEEECCcHHHHHHHHHHHhCCCC---EEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccC-CHHHHHHHH
Confidence 54 469999999999999999999999987 999999875310 1111110 00000 000000
Q ss_pred ---------------Cccccc---C--------CCCCCCChhhHhhcCcEEEcCCeeEEEECC----CC--EEEccCCcE
Q 013914 65 ---------------GFHVCV---G--------SGGERLLPEWYKEKGIELILSTEIVRADIA----SK--TLLSATGLI 112 (434)
Q Consensus 65 ---------------~~~~~~---~--------~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~----~~--~v~~~~~~~ 112 (434)
+..... + ......+.+.+++.|++++.++.++.+..+ .. .+.+.++ +
T Consensus 76 ~~~~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~ 154 (401)
T 2gqf_A 76 ARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-Q 154 (401)
T ss_dssp HHSCHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-E
T ss_pred HhCCHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-E
Confidence 000000 0 000011233445679999999999988755 33 3444454 7
Q ss_pred EEcceEEEecCCCcc
Q 013914 113 FKYQILVIATGSTVL 127 (434)
Q Consensus 113 ~~~d~lvlAtG~~~~ 127 (434)
+++|++|+|||+.+.
T Consensus 155 i~ad~VVlAtG~~s~ 169 (401)
T 2gqf_A 155 WQCKNLIVATGGLSM 169 (401)
T ss_dssp EEESEEEECCCCSSC
T ss_pred EECCEEEECCCCccC
Confidence 999999999998874
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-13 Score=130.74 Aligned_cols=94 Identities=19% Similarity=0.231 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--------CccChhhhhc-ccc-
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--------GRPLISLFKG-QVA- 273 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G--------~~p~~~~~~~-~~~- 273 (434)
+..+...+...+++.| +++++++|++|+.++++ ..|++.+|+++++|.||+|+| +.|+.+.... .+.
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~ 279 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDV--VNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEE 279 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSS--EEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHh
Confidence 4445666677777788 99999999999874444 468888998899999999999 8888765422 111
Q ss_pred -ccCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 274 -ENKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 274 -~~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
.....+.|+..++++.+++|+.||+..
T Consensus 280 ~~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 280 GHGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred CCCcceEEEEEEECCCCcCceEcCCCCE
Confidence 134569999999999999999999843
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=122.70 Aligned_cols=158 Identities=16% Similarity=0.232 Sum_probs=93.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCccCccccCCC----CCCCCCC------------c
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG------------F 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~------------~ 66 (434)
..+||||||||+||++||..|++.|.+ |+|||++. ..+...|..+.+..... ....+.+ +
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQ---TLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCC---EEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 458999999999999999999999987 99999974 22222222221111000 0000000 0
Q ss_pred ccc---cCCC------------CCCCChhhHhh-cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCCCcc
Q 013914 67 HVC---VGSG------------GERLLPEWYKE-KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 67 ~~~---~~~~------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
... .+.. ....+.+.+++ .|++++. ..|+.+..++. .|.+.+|.++.+|.+|+|||+.+.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~-~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQ-QAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEE-EEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 000 0000 00112233444 5899965 58998876554 356667878999999999999887
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~ 193 (434)
.+. ++|... + .+.+ +| +.++++++..|.+.|.+|+.+.
T Consensus 183 ~~~---i~G~~~---~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 183 GKI---HIGLDN---Y------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp CEE---ECC--------------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred Ccc---ccCccc---C------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 665 344321 0 1223 46 7889999999999999998875
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=114.82 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=115.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCccCCcc-------------------------------------CC
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWCMPRL-------------------------------------FT 204 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~~~~~-------------------------------------~~ 204 (434)
...++|||+|++|+.+|..|++. |.+|+++++.+.+.... ..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 118 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 118 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCH
Confidence 35799999999999999999997 99999999886542100 12
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeC---------CC-----cEEECCEEEEcccCccChhhh-
Q 013914 205 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLK---------DG-----RTLEADIVVVGVGGRPLISLF- 268 (434)
Q Consensus 205 ~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~---------~g-----~~~~~D~vi~a~G~~p~~~~~- 268 (434)
.++...+.+.+.+ .||+++++++|.++.. +++++..+.+. +| .++++|.||+|+|..++....
T Consensus 119 ~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~-~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~ 197 (284)
T 1rp0_A 119 ALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 197 (284)
T ss_dssp HHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred HHHHHHHHHHHHhcCCCEEEcCcEEEEEEe-cCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence 3455566666655 7999999999999986 34555566552 32 579999999999987764321
Q ss_pred -----hcc--ccc-cCCcEEeCC-------CCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 -----KGQ--VAE-NKGGIETDD-------FFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 -----~~~--~~~-~~g~i~vd~-------~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..+ ... ...++.+|. ..+++.|++|++||++... .+.++..+.+..+..+|+.+|.++...+
T Consensus 198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~~l 274 (284)
T 1rp0_A 198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALKAL 274 (284)
T ss_dssp HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHHHh
Confidence 111 111 122343332 3456779999999987532 2223333567778899999999998765
Q ss_pred C
Q 013914 334 G 334 (434)
Q Consensus 334 ~ 334 (434)
.
T Consensus 275 ~ 275 (284)
T 1rp0_A 275 G 275 (284)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-11 Score=116.19 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=94.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCccCccccCCC----CCCCCCC----------ccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYLFPE----GTARLPG----------FHV 68 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~~~~----~~~~~~~----------~~~ 68 (434)
..+||||||||+||++||..|++.|.+ |+|||++. ..+...|..+.+..... ....+.+ ..+
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~k---VlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f 102 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAK---TAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF 102 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCC---EEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence 358999999999999999999999987 99999974 22222222211110000 0000000 000
Q ss_pred c-----cCCC------------CCCCChhhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCcc
Q 013914 69 C-----VGSG------------GERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 69 ~-----~~~~------------~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
. .+.. ....+.+.+++ .|++++. ..|+.+..++.. |.+.+|.++.++.+|+|||+.+.
T Consensus 103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~-~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQ-EEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-SCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEE-eEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 0 0000 00112233444 4899965 589988765553 56678888999999999999877
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~ 193 (434)
.+. ++|.. .+ .+.+ + |+.++.+++..|.+.|.++..+.
T Consensus 182 ~~~---~~G~~---~~------------------~~Gr---~-G~~~A~~la~~L~~lG~~v~~l~ 219 (637)
T 2zxi_A 182 GVI---YIGDK---MI------------------PGGR---L-GEPRSEGLSDFYRRFDFPLIRFK 219 (637)
T ss_dssp CEE---EETTE---EE------------------ECSB---T-TBCCBCTHHHHHHHTTCCCEEEE
T ss_pred Cce---eccce---ec------------------CCCC---C-CchhHHHHHHHHHhcCCceEEec
Confidence 655 34432 11 1222 2 35677889999999988776654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.7e-11 Score=110.47 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++++++|+++..++++. ..+.+.+| .++.+|.||+|+|..
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~a~~VV~A~G~~ 208 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGG-FELDFGGAEPMTLSCRVLINAAGLH 208 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSS-EEEEECTTSCEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCce-EEEEECCCceeEEEeCEEEECCCcc
Confidence 46788889999999999999999999998844443 35788888 489999999999965
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=108.30 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=34.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
|++|||+||||||||+++|..|+++|++ |+|+|+.+..
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~~---V~v~Er~~~~ 39 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGLK---TLMIEKRPEI 39 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSST
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence 3569999999999999999999999998 9999998653
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=102.30 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccc-cCCCCCCCChhhHhh
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVC-VGSGGERLLPEWYKE 84 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (434)
+||+|||||++|+.+|..|++.|.+ |+|+|+.+....... .....+++... ..........+.+++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~---v~lie~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~ 68 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLK---VLVLDGGRSKVKGVS----------RVPNYPGLLDEPSGEELLRRLEAHARR 68 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEECSCCTTTTCS----------CCCCSTTCTTCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCcccCch----------hhhccCCCcCCCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999886 999999863211100 01111211000 000011234455667
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
.+++++.+ .+.+++.+.. .+.+.++ ++.+|.+|+|+|..|..+.
T Consensus 69 ~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~~~ 114 (180)
T 2ywl_A 69 YGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPTLPS 114 (180)
T ss_dssp TTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCHHHH
T ss_pred cCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCCccc
Confidence 89999999 9999886543 4666777 8999999999999985444
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-11 Score=120.52 Aligned_cols=39 Identities=31% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~ 42 (434)
|....+||||||||+||+++|..|++.| .+ |+||||...
T Consensus 1 m~~~~~DVvIVG~G~AGl~aAl~la~~G~~~~---V~vlEk~~~ 41 (602)
T 1kf6_A 1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAK---IALISKVYP 41 (602)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHHHHCTTCC---EEEEESSCG
T ss_pred CCcccCCEEEECCCHHHHHHHHHHHhcCCCCc---EEEEeCCCC
Confidence 4445689999999999999999999998 76 999999753
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.3e-11 Score=112.78 Aligned_cols=122 Identities=23% Similarity=0.288 Sum_probs=72.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CCCccCccccCCCC-CCCCCCc------
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-------ERPALSKAYLFPEG-TARLPGF------ 66 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~------ 66 (434)
||++++||+|||||+||+++|..|+++|.+ |+|+|+.+.... .++.+......... ....+.+
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G~~---V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~ 99 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGRR---VLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALA 99 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCCCc---EEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHH
Confidence 666789999999999999999999999987 999999875321 01111000000000 0000000
Q ss_pred ----------------ccccCC-----------CCCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcce
Q 013914 67 ----------------HVCVGS-----------GGERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQI 117 (434)
Q Consensus 67 ----------------~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~ 117 (434)
...... .....+.+.+++.|++++.++.|..+..+.. .|.+.++ ++.+|+
T Consensus 100 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~ 178 (417)
T 3v76_A 100 RYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAAS 178 (417)
T ss_dssp HSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESE
T ss_pred hcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeE
Confidence 000000 0001123334557999999999999977655 3555566 899999
Q ss_pred EEEecCCCc
Q 013914 118 LVIATGSTV 126 (434)
Q Consensus 118 lvlAtG~~~ 126 (434)
+|+|||..+
T Consensus 179 VIlAtG~~S 187 (417)
T 3v76_A 179 LVVASGGKS 187 (417)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCcc
Confidence 999999876
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=103.31 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+..+++.+| ++.+|.||+|+|...
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~-~~~~v~gv~~~~g-~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLI-ENNEIKGVKTNKG-IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEECCceEEEEEE-ECCEEEEEEECCc-EEECCEEEECcchhH
Confidence 456778888889999999999999999987 3456656888888 899999999999654
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-10 Score=111.09 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|.. +++++.+|++++|+++.||.||++++.
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~-~~~~~~gV~~~~g~~~~ad~VV~~a~~ 276 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVLNARVSHMET-TGNKIEAVHLEDGRRFLTQAVASNADV 276 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTSCEEECSCEEECCC-
T ss_pred cchHHHHHHHHHHhCCceeeecceeEEEe-eCCeEEEEEecCCcEEEcCEEEECCCH
Confidence 56788889999999999999999999987 577888999999999999999998874
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-09 Score=103.60 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCC---eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGT---VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~---~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|+++++++ +|+++.. +++.+.+|.+.+|+++.+|.||+|+|..
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~-~~~~v~gV~t~~G~~i~Ad~VV~AtG~~ 220 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIF-ENNDVKGAVTADGKIWRAERTFLCAGAS 220 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEE-ETTEEEEEEETTTEEEECSEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEe-cCCeEEEEEECCCCEEECCEEEECCCCC
Confidence 45778888899999999999999 9999987 4566777999999889999999999953
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-09 Score=102.86 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCcc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p 263 (434)
..+.+.+.+.+++.|++++.+++|+++..++++....+.+.+|+ ++.+|.||.|+|...
T Consensus 106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence 45667777788888999999999999987555555667778887 699999999999765
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-11 Score=117.12 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=104.3
Q ss_pred EcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHH---------HHHHHhCCCCcEEEECCCHHHHHHHHHHHh
Q 013914 114 KYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKL---------VEAIKAKKNGKAVVVGGGYIGLELSAALKI 184 (434)
Q Consensus 114 ~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~---------~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~ 184 (434)
.||++++++|++|..+++ .+.+.++++......+..++ ..........+|+|||+|+.|+.+|..|++
T Consensus 37 ~~~~l~~~~g~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~ 113 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLS---QYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELAL 113 (497)
T ss_dssp HHHHHHHHHTCCTTCHHH---HHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcE---eehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHH
Confidence 468899999999876653 33222333333444444333 111111235789999999999999999999
Q ss_pred CCCeEEEEccCCccCCc----cC----------------------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 185 NNIDVSMVYPEPWCMPR----LF----------------------------TADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 185 ~g~~v~lv~~~~~~~~~----~~----------------------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.|.+|+++++.+.+... .. ..++.+.+.+.+++.||+++++++|+++.
T Consensus 114 ~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~ 193 (497)
T 2bry_A 114 LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQ 193 (497)
T ss_dssp TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEE
T ss_pred CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 99999999987654210 00 14666778888888999999999999998
Q ss_pred ecC-CCcEEEEEe--C-CC--cEEECCEEEEcccCccChh
Q 013914 233 TNA-DGEVKEVKL--K-DG--RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 233 ~~~-~g~v~~v~~--~-~g--~~~~~D~vi~a~G~~p~~~ 266 (434)
.++ ++....+.+ . +| .++.+|.||.|+|..+...
T Consensus 194 ~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 194 PPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp CCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred EecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 632 233345655 4 66 4789999999999877654
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=98.05 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC-CCCCCCccCccccCCCCCCCC-CCcccccCC---CCCCCCh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV-APYERPALSKAYLFPEGTARL-PGFHVCVGS---GGERLLP 79 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~ 79 (434)
.+||+|||||++|+++|..|++.|.+ |+|||+... .. . .+ ... ........+ ..+....+. .....+.
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~---v~lie~~~~~~G-~-~~-~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~l~ 75 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVM-M-PF-LPP-KPPFPPGSLLERAYDPKDERVWAFHARAK 75 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTT-C-CS-SCC-CSCCCTTCHHHHHCCTTCCCHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEecCCCcCC-c-cc-Ccc-ccccchhhHHhhhccCCCCCHHHHHHHHH
Confidence 68999999999999999999999987 999999732 11 0 00 000 000000000 000000000 0001223
Q ss_pred hhHhhc-CcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCcc
Q 013914 80 EWYKEK-GIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 80 ~~~~~~-~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
+.+++. +++++. +.|+++..+... +.+.++.++.+|++|+|+|....
T Consensus 76 ~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 76 YLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp HHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred HHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 445555 899985 589988765543 55667778999999999998654
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.8e-09 Score=100.49 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
...+.+.+.+.+++.||+++++++|+++.. +++.+..|.+.+|+++.+|.||+|+|..+
T Consensus 133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 133 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-cCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence 367788888899999999999999999986 35666788899998899999999999765
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-08 Score=101.71 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc-EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~-~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|+++..++++ ..|.+.+|. ++.+|.||+|+|..
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~--v~V~t~~G~~~i~Ad~VVlAtG~~ 468 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQ--WQLTFGQSQAAKHHATVILATGHR 468 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSS--EEEEEC-CCCCEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCe--EEEEeCCCcEEEECCEEEECCCcc
Confidence 4678888889999999999999999999884444 478888887 89999999999954
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-08 Score=93.27 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.+++.|++++.+++|+++.. +++.+..+.+.+| ++.+|.||+|+|...
T Consensus 173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 173 HDHVAWAFARKANEMGVDIIQNCEVTGFIK-DGEKVTGVKTTRG-TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-SSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-eCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence 347788888999999999999999999987 3566677888888 799999999999654
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-08 Score=101.10 Aligned_cols=60 Identities=25% Similarity=0.455 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++. ||+++.+ +|+++..++++.+..|.+.+|+++.+|.||.|+|.....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence 56788888888888 9999999 999998755677778899999889999999999975543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-09 Score=101.79 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=76.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--C-------------ccccCCCCCCCCCCccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--S-------------KAYLFPEGTARLPGFHV 68 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~ 68 (434)
+.+||+|||||++|+++|..|++.|.+ |+|+|+.+......... . ..+.... .....+..
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~---v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~--~~~~~~~~ 84 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQNGWD---VRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGS--HTPPTYET 84 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTC--BCCSCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhC--CCccceEE
Confidence 358999999999999999999999987 99999986542111000 0 0000000 00000000
Q ss_pred cc-----------CC--------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 69 CV-----------GS--------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 69 ~~-----------~~--------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.. +. .....+.+.+.+.|++++.++.|+.++.+. .+.+.+|.++.+|.||.|+|......
T Consensus 85 ~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~vr 163 (379)
T 3alj_A 85 WMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSKVR 163 (379)
T ss_dssp EETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred EeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHHHH
Confidence 00 00 001122334455789999999999998755 88888888899999999999876543
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5e-09 Score=101.54 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec--------------CCCcEEEEEeCCCcEE--ECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN--------------ADGEVKEVKLKDGRTL--EADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~--------------~~g~v~~v~~~~g~~~--~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|+++..+ +++.+..+.+.+| ++ .+|.||+|+|..
T Consensus 180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~ 253 (448)
T 3axb_A 180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVW 253 (448)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcC
Confidence 4578888999999999999999999999762 3455567888888 68 999999999964
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=102.46 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCC-CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCc--cCc---------cccC-----CCCCCCC
Q 013914 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPA--LSK---------AYLF-----PEGTARL 63 (434)
Q Consensus 1 M~~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~--~~~---------~~~~-----~~~~~~~ 63 (434)
||+ +++||+|||||++|+++|..|++.|.+ |+|+|+.+........ +.. +++. ......+
T Consensus 1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~---V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 77 (399)
T 2x3n_A 1 GMTDNHIDVLINGCGIGGAMLAYLLGRQGHR---VVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHE 77 (399)
T ss_dssp ----CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECE
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCccee
Confidence 453 458999999999999999999999987 9999998653111110 000 0000 0000000
Q ss_pred -----CC--c-ccccC----------CC---CCCCChhhHhhc-CcEEEcCCeeEEEECCCC----EEEccCCcEEEcce
Q 013914 64 -----PG--F-HVCVG----------SG---GERLLPEWYKEK-GIELILSTEIVRADIASK----TLLSATGLIFKYQI 117 (434)
Q Consensus 64 -----~~--~-~~~~~----------~~---~~~~~~~~~~~~-~v~~~~~~~v~~i~~~~~----~v~~~~~~~~~~d~ 117 (434)
.+ . ..... .. ....+.+.+.+. |++++.++.|+.++.+.. .+.+.+|+++++|.
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~ 157 (399)
T 2x3n_A 78 LEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRV 157 (399)
T ss_dssp EEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCE
Confidence 00 0 00000 00 000112223334 899999999999987654 56677888899999
Q ss_pred EEEecCCCccc
Q 013914 118 LVIATGSTVLR 128 (434)
Q Consensus 118 lvlAtG~~~~~ 128 (434)
+|.|+|.....
T Consensus 158 vV~AdG~~s~v 168 (399)
T 2x3n_A 158 VVGADGIASYV 168 (399)
T ss_dssp EEECCCTTCHH
T ss_pred EEECCCCChHH
Confidence 99999986543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=106.99 Aligned_cols=52 Identities=13% Similarity=0.066 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..+..+.++.|++++++++|++|..++ +.+ .|.+.+|+++++|.||+|++..
T Consensus 216 ~l~~~l~~~lg~~i~~~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 216 QVSERIMDLLGDRVKLERPVIYIDQTR-ENV-LVETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHHHGGGEESSCCEEEEECSS-SSE-EEEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHHHcCCcEEcCCeeEEEEECC-CeE-EEEECCCeEEEeCEEEECCCHH
Confidence 333444455588999999999998743 344 4888999999999999999853
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.4e-10 Score=113.15 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~------g~~~~~V~vie~~~~ 42 (434)
.+||||||||+||++||+.|++. |.+ |+||||...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~---V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAK---ILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCC---EEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCc---EEEEEecCC
Confidence 58999999999999999999997 887 999999754
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=3.3e-09 Score=101.12 Aligned_cols=124 Identities=13% Similarity=0.079 Sum_probs=74.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-c--cCc---------cccCCCCCCCCCCccc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-A--LSK---------AYLFPEGTARLPGFHV 68 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~--~~~---------~~~~~~~~~~~~~~~~ 68 (434)
|+++.+||+|||||++|+++|..|++.|.+ |+|+|+.+....... . +.. ++..............
T Consensus 1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ 77 (397)
T 2vou_A 1 MSPTTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEY 77 (397)
T ss_dssp -CCCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEE
T ss_pred CCCCCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEE
Confidence 666789999999999999999999999987 999999865211100 0 000 0000000000000000
Q ss_pred c---cCCC--------C---CCCChhhHhh--cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcc
Q 013914 69 C---VGSG--------G---ERLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 69 ~---~~~~--------~---~~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
. .+.. . ...+.+.+.+ .+++++.++.|+++..+.. ++.+.+|.++.+|.||.|+|....
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 78 VDALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EETTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred EecCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 0 0000 0 0011122222 3789999999999976654 466678888999999999998654
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-08 Score=93.03 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=55.0
Q ss_pred CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 187 IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 187 ~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
....++.+....+. +..+.+.+.+.+++.|++++.+++|+++..++++ ..+.+.+| ++.+|.||+|+|...
T Consensus 135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~~ 205 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAWN 205 (389)
T ss_dssp TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGGH
T ss_pred CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCe--EEEEeCCC-EEEeCEEEEecCccH
Confidence 45666666555443 4678888899999999999999999999874443 45677766 799999999999754
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=97.01 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++++++|+++..++ +. ..|.+.+|.++.+|.||+|+|..
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~-~~-v~V~t~~G~~i~Ad~VVlAtG~~ 472 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRKD-DC-WLLNFAGDQQATHSVVVLANGHQ 472 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEETTSCEEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeC-Ce-EEEEECCCCEEECCEEEECCCcc
Confidence 46788888899999999999999999998743 33 47888888889999999999964
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.4e-09 Score=99.93 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
...+.+.+.+.+++.|++++++++|++|.. +++.+ + +.+|+++.+|.||+|+|......++
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~v--V-~~~g~~~~ad~Vv~a~~~~~~~~ll 248 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--Y-TRDNEEYSFDVAISNVGVRETVKLI 248 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEESSCCEEEEET-TTTEE--E-ETTCCEEECSEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCeEEEEEE-ECCEE--E-EeCCcEEEeCEEEECCCHHHHHHhc
Confidence 467888999999999999999999999987 34444 4 5678899999999999965444444
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.7e-09 Score=103.50 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=35.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|++..+||+|||||++|+++|..|+++|.+ |+|||+.+.
T Consensus 1 M~~~~~dVlIVGaG~aGl~~A~~La~~G~~---v~viEr~~~ 39 (535)
T 3ihg_A 1 MNDHEVDVLVVGAGLGGLSTAMFLARQGVR---VLVVERRPG 39 (535)
T ss_dssp CCCCSEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSSS
T ss_pred CCCccCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 666679999999999999999999999987 999999875
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-11 Score=124.63 Aligned_cols=54 Identities=17% Similarity=0.310 Sum_probs=43.1
Q ss_pred HhcCcEEEcCCeEEEEEecCC-CcEEEEEeC---CCc--EEECCEEEEcccCccChhhhh
Q 013914 216 ANKGIKIIKGTVAVGFTTNAD-GEVKEVKLK---DGR--TLEADIVVVGVGGRPLISLFK 269 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~-g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~~~~~ 269 (434)
++.||++++++.|+++..+++ +++.+|++. +|+ ++.+|.||+|+|..|+..++.
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~ 330 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV 330 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence 445899999999999987433 377777774 354 678999999999999998774
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=107.55 Aligned_cols=158 Identities=14% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC-CCCCCCCccCcccc------------CCC------------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA-VAPYERPALSKAYL------------FPE------------ 58 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~-~~~~~~~~~~~~~~------------~~~------------ 58 (434)
..+||+|||||+||++||..|++.|.+ |+|||+.. ..+...|..+.+.. ...
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~k---VlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f 96 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLH---CLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF 96 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCc---EEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence 468999999999999999999999987 99999984 12221121111100 000
Q ss_pred ---CCCCCCCccc---ccCC-CCCCCChhhHhh-cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCcc
Q 013914 59 ---GTARLPGFHV---CVGS-GGERLLPEWYKE-KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 59 ---~~~~~~~~~~---~~~~-~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
....-+.... .... .......+.+++ .|++++.+ .|..+..+... |.+.+|.++.+|.+|+|||+.+.
T Consensus 97 ~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 97 RMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp EEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred hhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 0000000000 0000 000111223444 48999765 88887765554 55677888999999999999876
Q ss_pred cccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Q 013914 128 RLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192 (434)
Q Consensus 128 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv 192 (434)
.+.. .+.. ... ..+++ |+.++++++..|.+.|.+|..+
T Consensus 176 ~~i~---~G~~-----~~~----------------~g~~v---G~~~a~~la~~L~~~G~kv~~l 213 (641)
T 3cp8_A 176 GLIH---IGMD-----HFP----------------GGRST---AEPPVEGLTESLASLGFSFGRL 213 (641)
T ss_dssp CEEE---ETTE-----EEE----------------CSSST---TSCCBCSHHHHHHHTTCCEEEE
T ss_pred ccce---eeee-----eec----------------ccccc---CCchhhhhHHHHHhCCceEEee
Confidence 4432 2211 110 11221 3567788999999999888665
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-09 Score=101.17 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--------------CCC-Ccc-----CccccCCCCC-C--
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--------------YER-PAL-----SKAYLFPEGT-A-- 61 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--------------~~~-~~~-----~~~~~~~~~~-~-- 61 (434)
.+||||||||++|+++|+.|++.|++ |+|||+.+... +.. +.. ..+.+..... .
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~k---V~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i 183 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFN---PIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQV 183 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCe---EEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEe
Confidence 47999999999999999999999987 99999985310 000 000 0000000000 0
Q ss_pred CCCCcc--------cccCCC------------------CCCCChhhHhhcCcEEEcCCeeEEEECCCC---EEEccCCcE
Q 013914 62 RLPGFH--------VCVGSG------------------GERLLPEWYKEKGIELILSTEIVRADIASK---TLLSATGLI 112 (434)
Q Consensus 62 ~~~~~~--------~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~~~~~~~ 112 (434)
..+.+. ...+.. ....+.+.+++.|++++.++.|+.+..+.. .|.+.++++
T Consensus 184 ~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~ 263 (549)
T 3nlc_A 184 KDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEE 263 (549)
T ss_dssp CCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCE
T ss_pred ccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCE
Confidence 000000 000000 001122334567999999999999987654 266778888
Q ss_pred EEcceEEEecCCCcc
Q 013914 113 FKYQILVIATGSTVL 127 (434)
Q Consensus 113 ~~~d~lvlAtG~~~~ 127 (434)
+.+|.+|+|+|..+.
T Consensus 264 i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 264 IKSRHVVLAVGHSAR 278 (549)
T ss_dssp EECSCEEECCCTTCH
T ss_pred EECCEEEECCCCChh
Confidence 999999999998873
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-08 Score=100.84 Aligned_cols=124 Identities=16% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-ccCcc----ccC----------CCCC--------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKA----YLF----------PEGT-------- 60 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~----~~~----------~~~~-------- 60 (434)
+++||+|||||++|+++|..|++.|++ |+|||+.+...+... .+... ++. ....
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 82 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAMRGHR---VLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFR 82 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEE
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCC---EEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEE
Confidence 358999999999999999999999987 999999874221110 00000 000 0000
Q ss_pred --CCCCCcccccC-----C-C-C--------CCCChhhHhhcCcEEEcCCeeEEEECCCCE---EE--ccCCc--EEEcc
Q 013914 61 --ARLPGFHVCVG-----S-G-G--------ERLLPEWYKEKGIELILSTEIVRADIASKT---LL--SATGL--IFKYQ 116 (434)
Q Consensus 61 --~~~~~~~~~~~-----~-~-~--------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~--~~~~~--~~~~d 116 (434)
.....+..... . . . ...+.+.+.+.|++++.++.|+.+..+... +. ..+|. ++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad 162 (512)
T 3e1t_A 83 WGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHAR 162 (512)
T ss_dssp CSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEE
T ss_pred ecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcC
Confidence 00000000000 0 0 0 011223344579999999999999876653 33 34563 79999
Q ss_pred eEEEecCCCccccc
Q 013914 117 ILVIATGSTVLRLT 130 (434)
Q Consensus 117 ~lvlAtG~~~~~~~ 130 (434)
.+|.|+|.......
T Consensus 163 ~VI~AdG~~S~vr~ 176 (512)
T 3e1t_A 163 FIVDASGNRTRVSQ 176 (512)
T ss_dssp EEEECCCTTCSSGG
T ss_pred EEEECCCcchHHHH
Confidence 99999998765443
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=95.73 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++..+++ . ..|++.+| ++.+|.||+|+|..
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAW 208 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChh
Confidence 467788888999999999999999999987433 3 67888888 89999999999964
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-09 Score=93.45 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCCCCCCCccCccccCC-----CCC-----CCCC-----Ccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVAPYERPALSKAYLFP-----EGT-----ARLP-----GFH 67 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~-----~~~ 67 (434)
.++||+|||||++|+++|..|+++ |.+ |+|||+.+..... .......+.. ... ..++ .+.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~---V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 113 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV 113 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCCe---EEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence 357999999999999999999997 877 9999998653211 0000000000 000 0000 000
Q ss_pred cccC-CCCCCCChhhHhh-cCcEEEcCCeeEEEECCCCEE---Ecc---------CC-----cEEEcceEEEecCCCccc
Q 013914 68 VCVG-SGGERLLPEWYKE-KGIELILSTEIVRADIASKTL---LSA---------TG-----LIFKYQILVIATGSTVLR 128 (434)
Q Consensus 68 ~~~~-~~~~~~~~~~~~~-~~v~~~~~~~v~~i~~~~~~v---~~~---------~~-----~~~~~d~lvlAtG~~~~~ 128 (434)
.... ......+.+.+.+ .|++++.++.|+++..+...+ .+. ++ .++.+|.+|+|+|..+..
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence 0000 0000011222333 689999999999998765533 321 22 579999999999976643
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-09 Score=104.34 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=75.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-CC-Cc--cCccccCCCCC-C--------CCCCcc
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY-ER-PA--LSKAYLFPEGT-A--------RLPGFH 67 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~-~~-~~--~~~~~~~~~~~-~--------~~~~~~ 67 (434)
||++++||+|||||+||+++|..|++.|.+ |+|+|+.+.... .. +. ++...+..... . ...+..
T Consensus 2 mm~~~~dVvIVGaG~aGl~aA~~La~~G~~---V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~ 78 (453)
T 3atr_A 2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLK---ILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIK 78 (453)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHSSSSCC---EEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEE
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceE
Confidence 665679999999999999999999999987 999999864211 00 10 00000000000 0 000000
Q ss_pred ---------cccCC-----C---CCCCChhhHhhcCcEEEcCCeeEEEECCCCE---EEcc---CCc--EEEcceEEEec
Q 013914 68 ---------VCVGS-----G---GERLLPEWYKEKGIELILSTEIVRADIASKT---LLSA---TGL--IFKYQILVIAT 122 (434)
Q Consensus 68 ---------~~~~~-----~---~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~---~~~--~~~~d~lvlAt 122 (434)
..... . ....+.+.+.+.|++++.++.|+.+..+... |.+. +|+ ++.+|.+|.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~Ad 158 (453)
T 3atr_A 79 LYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEAT 158 (453)
T ss_dssp EECTTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECC
T ss_pred EECCCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECc
Confidence 00000 0 0011122234578999999999998876654 3343 565 78999999999
Q ss_pred CCCccccc
Q 013914 123 GSTVLRLT 130 (434)
Q Consensus 123 G~~~~~~~ 130 (434)
|.......
T Consensus 159 G~~s~vr~ 166 (453)
T 3atr_A 159 GYSRSFRS 166 (453)
T ss_dssp GGGCTTGG
T ss_pred CCchhhHH
Confidence 97655443
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.4e-08 Score=90.99 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=78.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------------------Ccc-C---------CHHHHHHHH
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------------------PRL-F---------TADIAAFYE 212 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~---------------------~~~-~---------~~~~~~~~~ 212 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.. . ..++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 379999999999999999999999999999886531 000 0 067888899
Q ss_pred HHHHhcCcEEEcCCeEEEEEecCCCcEEE-EEeCCCcEEECCEEEEcccC
Q 013914 213 GYYANKGIKIIKGTVAVGFTTNADGEVKE-VKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 213 ~~l~~~GV~~~~~~~v~~i~~~~~g~v~~-v~~~~g~~~~~D~vi~a~G~ 261 (434)
+.+++.|++++++++|++++.. ++ ... +++.+| ++.+|.||+|+|.
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~-~~-~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHF-GE-RLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEE-TT-EEEEEETTSC-EEEEEEEEECCCS
T ss_pred HHHHHcCCEEEcCCEEEEEEEC-CC-cEEEEEeCCC-EEEeCEEEECCCC
Confidence 9999999999999999999873 23 345 888888 8999999999995
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-08 Score=101.18 Aligned_cols=121 Identities=21% Similarity=0.196 Sum_probs=71.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--ccCc---------cc----cCCC-----C-CCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--ALSK---------AY----LFPE-----G-TARL 63 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~~~---------~~----~~~~-----~-~~~~ 63 (434)
++||+|||||++|+++|..|+++|.+ |+|||+.+....... .++. ++ .... . ....
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~---V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 125 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVG---ALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGI 125 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCC---EEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTB
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCc
Confidence 57999999999999999999999987 999999865321100 0000 00 0000 0 0000
Q ss_pred C--Cccccc---CCC---------CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEc--cCC-cEEEcceEEEecCC
Q 013914 64 P--GFHVCV---GSG---------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLS--ATG-LIFKYQILVIATGS 124 (434)
Q Consensus 64 ~--~~~~~~---~~~---------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~--~~~-~~~~~d~lvlAtG~ 124 (434)
. .+.... ... ....+.+.+.+.|++++.+++|+.+..+... +.+ .+| .++++|+||.|.|.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~ 205 (570)
T 3fmw_A 126 FTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGG 205 (570)
T ss_dssp CTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCS
T ss_pred ccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCC
Confidence 0 000000 000 0011223344569999999999998876653 444 566 68999999999998
Q ss_pred Cccc
Q 013914 125 TVLR 128 (434)
Q Consensus 125 ~~~~ 128 (434)
....
T Consensus 206 ~S~v 209 (570)
T 3fmw_A 206 RSTV 209 (570)
T ss_dssp SCHH
T ss_pred CchH
Confidence 6543
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-08 Score=101.07 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=73.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-ccCc---------c-----------------cc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSK---------A-----------------YL 55 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~---------~-----------------~~ 55 (434)
|+.+||+|||||+||+++|..|++.|.+ |+|||+.+....... .+.. + +.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~---V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~ 97 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHKLGHD---VTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFL 97 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHcCCCC---EEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEE
Confidence 4469999999999999999999999987 999999864322110 0000 0 00
Q ss_pred CCCCCCCCCCccccc------CC------C---CCCCChhhHhhcCcEEEcCCeeEEEECC-CC--EEEcc-CC--cEEE
Q 013914 56 FPEGTARLPGFHVCV------GS------G---GERLLPEWYKEKGIELILSTEIVRADIA-SK--TLLSA-TG--LIFK 114 (434)
Q Consensus 56 ~~~~~~~~~~~~~~~------~~------~---~~~~~~~~~~~~~v~~~~~~~v~~i~~~-~~--~v~~~-~~--~~~~ 114 (434)
...... ...+.... .. . ....+.+.+++.|++++.++.|+.+..+ .. .|.+. +| .++.
T Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~ 176 (591)
T 3i3l_A 98 WGQDQA-PWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVE 176 (591)
T ss_dssp CSSSCC-CEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEE
T ss_pred ecCCCc-cceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEE
Confidence 000000 00000000 00 0 0011223344579999999999999875 32 35555 55 5799
Q ss_pred cceEEEecCCCcc
Q 013914 115 YQILVIATGSTVL 127 (434)
Q Consensus 115 ~d~lvlAtG~~~~ 127 (434)
+|.+|.|+|....
T Consensus 177 AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 177 SDFVIDAGGSGGP 189 (591)
T ss_dssp ESEEEECCGGGCH
T ss_pred cCEEEECCCCcch
Confidence 9999999997653
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-08 Score=93.76 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------------------------C----Cc-
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------------M----PR- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~------------------------------------~----~~- 201 (434)
...++|||+|+.|+.+|..|++.|.+|+++++.+.+ + ..
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987532 0 00
Q ss_pred -c-------------C----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE
Q 013914 202 -L-------------F----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE 251 (434)
Q Consensus 202 -~-------------~----------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~ 251 (434)
. . ...+.+.+.+.+++.|++++++++|+++.. +++.+..+++.+|+++.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~-~~~~v~gV~l~~G~~i~ 265 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHM-EDGQITGVTLSNGEEIK 265 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEE-SSSBEEEEEETTSCEEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEE-eCCEEEEEEECCCCEEE
Confidence 0 0 045666777888889999999999999987 45667789999999999
Q ss_pred CCEEEEcccCccCh
Q 013914 252 ADIVVVGVGGRPLI 265 (434)
Q Consensus 252 ~D~vi~a~G~~p~~ 265 (434)
||.||+|+|..+..
T Consensus 266 Ad~VVlA~G~~s~~ 279 (549)
T 3nlc_A 266 SRHVVLAVGHSARD 279 (549)
T ss_dssp CSCEEECCCTTCHH
T ss_pred CCEEEECCCCChhh
Confidence 99999999998753
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=90.37 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+.+.+.+.+++.|++++.+++|+++..++ +. ..+.+.+| ++.+|.||+|+|..
T Consensus 152 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~-~~-v~v~t~~g-~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 152 VRGTLAALFTLAQAAGATLRAGETVTELVPDA-DG-VSVTTDRG-TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESCCEEEEEEET-TE-EEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEcC-Ce-EEEEECCC-EEEcCEEEEcCCcC
Confidence 34567788888889999999999999998733 33 34666666 79999999999964
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=99.38 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=73.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC-ccCcc---ccCCCCC-CCCCCccc-----ccCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP-ALSKA---YLFPEGT-ARLPGFHV-----CVGSG 73 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~-~~~~~---~~~~~~~-~~~~~~~~-----~~~~~ 73 (434)
..+||+|||||++|+++|..|++.|.+ |+|||+.+..+..+. ..... .+..... .....+.. .....
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~---V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 167 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGAR---VVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ 167 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCe---EEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence 368999999999999999999999987 999999865431110 00000 0000000 00000000 00000
Q ss_pred CCCCChhhHhhcCcEEEcCCeeEEEECC---C--CEEEc--c-CC--cEEEcceEEEecCCCcccc
Q 013914 74 GERLLPEWYKEKGIELILSTEIVRADIA---S--KTLLS--A-TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 74 ~~~~~~~~~~~~~v~~~~~~~v~~i~~~---~--~~v~~--~-~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
....+.+.+++.|++++.++.|+++..+ . -.+.+ . +| .++.+|++|+|+|..+...
T Consensus 168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r 233 (497)
T 2bry_A 168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPE 233 (497)
T ss_dssp HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCT
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccc
Confidence 0112334445579999999999999863 1 24555 3 45 4689999999999887543
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=93.66 Aligned_cols=61 Identities=28% Similarity=0.443 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
...+.+.+.+.+++.|++++.+ +|+++..++++.+..+.+.+|+++.+|.||.|+|.....
T Consensus 164 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 164 AHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 3567788888888899999999 899998755666678889999889999999999975543
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=99.27 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+...+.+.+++.|++++.+++|+++.. +++.+..|.+.+| ++.||.||+|+|...
T Consensus 150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHHHHcCCEEECCceEEEEEE-eCCEEEEEEECCc-EEECCEEEECCccch
Confidence 457888889999999999999999999987 3556667888888 799999999999654
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=91.52 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCC--cc--Cc----cccCCC----------CCC---
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERP--AL--SK----AYLFPE----------GTA--- 61 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~--~~--~~----~~~~~~----------~~~--- 61 (434)
++.+||+|||||++|+++|..|++.|.+ |+|+|+.+....... .+ .. ..+... ...
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~ 100 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGID---VSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN 100 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCE---EEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence 3468999999999999999999999987 999999864321100 00 00 000000 000
Q ss_pred --CCCCccc-cc-----C-CCCC----CCChhhHhh--cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCC
Q 013914 62 --RLPGFHV-CV-----G-SGGE----RLLPEWYKE--KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 62 --~~~~~~~-~~-----~-~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~ 124 (434)
...+... .. . .... ..+.+.+.+ .+++++.+++|+.+..+.. ++.+.+|.++.+|.||.|+|.
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG 180 (398)
T ss_dssp EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence 0000000 00 0 0000 001112221 1357888899999987654 466678878999999999998
Q ss_pred Cccccc
Q 013914 125 TVLRLT 130 (434)
Q Consensus 125 ~~~~~~ 130 (434)
......
T Consensus 181 ~S~vR~ 186 (398)
T 2xdo_A 181 MSKVRK 186 (398)
T ss_dssp TCSCCT
T ss_pred chhHHh
Confidence 664433
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.1e-08 Score=95.83 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 205 ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 205 ~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+.+.+.+.+++ .|++++.+ +|+++..++++.+..+++.+|.++.+|.||.|+|.....
T Consensus 175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence 4567788888888 89999999 599998755676678888888789999999999976543
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-08 Score=94.54 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++|++|.. +++++..|.++ |+++.+|.||+|+|....
T Consensus 195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~ 253 (425)
T 3ka7_A 195 CKGIIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIAD-DRIHDADLVISNLGHAAT 253 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEET-TEEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEECCceeEEEE-ECCEEEEEEEC-CEEEECCEEEECCCHHHH
Confidence 366888899999999999999999999987 35666667775 778999999999995433
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.6e-08 Score=91.16 Aligned_cols=116 Identities=16% Similarity=0.250 Sum_probs=68.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH---cCCCCCcEEEEeCCCCCCCCCC----------ccC--ccccC--CC----------
Q 013914 6 FKYVILGGGVSAGYAAREFAK---QGVKPGELAIISKEAVAPYERP----------ALS--KAYLF--PE---------- 58 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~---~g~~~~~V~vie~~~~~~~~~~----------~~~--~~~~~--~~---------- 58 (434)
+||+|||||++|+++|+.|++ .|.+ |+|+||++..+.... ... ..++. +.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~---V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 78 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLY---LAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD 78 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEE---EEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCce---EEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence 599999999999999999999 7776 999999864221000 000 00000 00
Q ss_pred ------CCCCCCCc----------ccccCCC-CCCCChhhHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEE
Q 013914 59 ------GTARLPGF----------HVCVGSG-GERLLPEWYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILV 119 (434)
Q Consensus 59 ------~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lv 119 (434)
....+... ....... .......+.+..+++++.++.|+++..+.. +|.+.+|.++.+|++|
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence 00000000 0000000 001111223334899999999999987665 4556677778999999
Q ss_pred EecCC
Q 013914 120 IATGS 124 (434)
Q Consensus 120 lAtG~ 124 (434)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99863
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-08 Score=92.71 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++||+|||||++|+++|+.|+++|.+ |+|||+...
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~~G~~---V~llE~~~~ 51 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAKENKN---TALFESGTM 51 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 358999999999999999999999987 999999864
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.5e-08 Score=94.77 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC-c--EEECC-EEEEcccCc
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG-R--TLEAD-IVVVGVGGR 262 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g-~--~~~~D-~vi~a~G~~ 262 (434)
.+.+.+.+.+++.||+++++++++++..++++++.+|...++ + ++.+| .||+|+|--
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~ 263 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSF 263 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCCh
Confidence 788888899999999999999999999855788888876543 2 58896 999999943
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=91.92 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=83.2
Q ss_pred CcEEEECCCHHHHHHHHHHH-hCCCeEEEEccCCccCC--------c------------cC----------------CHH
Q 013914 164 GKAVVVGGGYIGLELSAALK-INNIDVSMVYPEPWCMP--------R------------LF----------------TAD 206 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~-~~g~~v~lv~~~~~~~~--------~------------~~----------------~~~ 206 (434)
.+|+|||+|+.|+.+|..|. +.|.+|+++++.+.+.. . .+ .++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 99999999998653310 0 01 246
Q ss_pred HHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--CccCh
Q 013914 207 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI 265 (434)
Q Consensus 207 ~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G--~~p~~ 265 (434)
+.+.+.+.+++.|+ +++++++|.+++.++++....|++.+|+++.+|.||+|+| .+|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 77788888899998 8999999999987555556788999999999999999999 45544
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-08 Score=95.54 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCC-C-cc-------------CccccCCCCCCC---CC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYER-P-AL-------------SKAYLFPEGTAR---LP 64 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~-~-~~-------------~~~~~~~~~~~~---~~ 64 (434)
++++||+|||||++|+++|..|+++|.+ |+|||+.+...... . .+ ...+... .... +.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~-~~~~~~~~~ 84 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVE---VVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV-ETSTQGHFG 84 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC-CBCCEEEET
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc-ccccccccc
Confidence 3578999999999999999999999987 99999986532111 0 00 0000000 0000 00
Q ss_pred CcccccC--CC------------CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCc---EEEcceEEEecCCC
Q 013914 65 GFHVCVG--SG------------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGL---IFKYQILVIATGST 125 (434)
Q Consensus 65 ~~~~~~~--~~------------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~---~~~~d~lvlAtG~~ 125 (434)
+...... .. ....+.+.+.+.|++++.+++++++..+... +.+.++. ++++|+||.|.|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~ 164 (500)
T 2qa1_A 85 GLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGR 164 (500)
T ss_dssp TEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTT
T ss_pred ceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcc
Confidence 0000000 00 0011223344568999999999999776654 4445553 79999999999986
Q ss_pred cc
Q 013914 126 VL 127 (434)
Q Consensus 126 ~~ 127 (434)
..
T Consensus 165 S~ 166 (500)
T 2qa1_A 165 SS 166 (500)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-07 Score=92.05 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=84.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------c------------c----------------CCHH
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------R------------L----------------FTAD 206 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------~------------~----------------~~~~ 206 (434)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . . -.++
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 35799999999999999999999999999998653210 0 0 1246
Q ss_pred HHHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--CccCh
Q 013914 207 IAAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI 265 (434)
Q Consensus 207 ~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G--~~p~~ 265 (434)
+.+.+.+.+++.|+ +++++++|++++.++++....|++.+|+++.+|.||+|+| .+|..
T Consensus 101 i~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~ 163 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANT 163 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCC
T ss_pred HHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCC
Confidence 77888888999998 8999999999987556556788999999999999999999 55554
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-07 Score=93.15 Aligned_cols=58 Identities=22% Similarity=0.165 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++.. +++.+.++.+.+ | .++.+|.||.|+|..
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~-~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~ 231 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALNYMKVESFIY-DQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPW 231 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEcCCEEEEEEE-cCCeEEEEEEEEcCCCceEEEECCEEEECCCcc
Confidence 567788888889999999999999999987 456666777653 3 478999999999953
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-07 Score=88.20 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=82.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------------Ccc---CCHHHHHHHHHHHHhcCcEEEcC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------------PRL---FTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~---------------~~~---~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. +.. ...++.+.+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999999999976432 100 13677888888899999999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC---ccChh
Q 013914 226 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG---RPLIS 266 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~---~p~~~ 266 (434)
++|.+++...++ ...+.+.+|+ +.+|.+|+|+|. .|...
T Consensus 88 ~~v~~i~~~~~~-~~~v~~~~g~-~~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 88 QAVESVEKQADG-VFKLVTNEET-HYSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp CCEEEEEECTTS-CEEEEESSEE-EEEEEEEECCTTSCCEECCC
T ss_pred CEEEEEEECCCC-cEEEEECCCE-EEeCEEEECCCCCcCCCCCC
Confidence 999999874332 3568888885 999999999998 66543
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=88.33 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=79.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC----cc------------CCc----cCCHHHHHHHHHHHHhcCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP----WC------------MPR----LFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~----~~------------~~~----~~~~~~~~~~~~~l~~~GV~~ 222 (434)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .+. ....++.+.+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 5689999999999999999999999999999843 11 011 113578888899999999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEe---CCCcEEECCEEEEcccCccChh
Q 013914 223 IKGTVAVGFTTNADGEVKEVKL---KDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 223 ~~~~~v~~i~~~~~g~v~~v~~---~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+.++ +.+++... +. ..+.+ .++.++.+|.+|+|+|.+|...
T Consensus 102 ~~~~-v~~i~~~~-~~-~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 102 ITET-VSKVDLSS-KP-FKLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp ECSC-EEEEECSS-SS-EEEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred EEeE-EEEEEEcC-CE-EEEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 9998 99998732 22 45555 4677899999999999876543
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-09 Score=102.32 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
..++.+.+.+.+++.|++++++++|++|..++++++.+|++.+|+++.||.||++++..
T Consensus 255 ~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 255 LGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp TTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 35788899999999999999999999998756788889999999899999999999987
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-07 Score=85.91 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=80.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC--CccC--------Cc---cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCM--------PR---LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~--~~~~--------~~---~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++. ..+. +. ....++.+.+.+.+++.|++++. .++.+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 48999999999999999999999999999985 1111 11 11357788888889999999999 88999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+..++ ....+.+.+|+++.+|.+|+|+|..|...
T Consensus 95 i~~~~--~~~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 95 IENRG--DEFVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEC----CEEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEecC--CEEEEEECCCCEEEcCEEEECcCCCCccC
Confidence 98732 22568888888999999999999887653
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=89.37 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=79.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---------------------------c-------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------L------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---------------------------~------------- 202 (434)
...|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 458999999999999999999999999999987643100 0
Q ss_pred -----------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 203 -----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 203 -----------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
...++.+.+.+.+++.||+++++++|+++..++++ ..+.+.+| ++.+|.||+|+
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~VIlAt 183 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG--FRVTTSAG-TVDAASLVVAS 183 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE--EEEEETTE-EEEESEEEECC
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE--EEEEECCc-EEEeeEEEECC
Confidence 01256677888888899999999999999874333 57888888 89999999999
Q ss_pred cCcc
Q 013914 260 GGRP 263 (434)
Q Consensus 260 G~~p 263 (434)
|..+
T Consensus 184 G~~S 187 (417)
T 3v76_A 184 GGKS 187 (417)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 9765
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-08 Score=96.59 Aligned_cols=36 Identities=31% Similarity=0.402 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||||||||+||+++|..|+++|.+ |+|||+.+..
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~---V~vlEk~~~~ 161 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAK---VILIEKEPVI 161 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence 58999999999999999999999987 9999998753
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=85.57 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=79.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C-----------ccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P-----------RLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~-----------~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + .....++.+.+.+.+++.+++++++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876431 0 0012567777888888889999999
Q ss_pred CeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 226 TVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
++|.+++..++ ...+.+.+|+++.+|.+|+|+|..
T Consensus 86 ~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred CEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence 99999987332 356778888889999999999983
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.2e-07 Score=85.22 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=80.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------C--------c---cCCHHHHHHHHHHHHhcCcEEEc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------P--------R---LFTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------~--------~---~~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
..+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . ....++.+.+.+.+++.++++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 3589999999999999999999999999999875431 1 0 01267778888888999999999
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 225 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 225 ~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+++|..+...+++ ...+.+.+|+++.+|.+|+|+|..
T Consensus 94 ~~~v~~i~~~~~~-~~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 94 NETVTKYTKLDDG-TFETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp SCCEEEEEECTTS-CEEEEETTSCEEEEEEEEECCTTC
T ss_pred CCEEEEEEECCCc-eEEEEECCCcEEEeeEEEEccCCC
Confidence 9999999874332 356788889899999999999983
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=6e-08 Score=96.69 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||||||||++|+++|..|+++|.+ |+|||+.+..
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G~~---V~vlEk~~~~ 156 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAGAN---VILVDKAPFS 156 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHTCC---EEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEeCCCCC
Confidence 57999999999999999999999987 9999998753
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=92.20 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=72.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCC-CC-cc-------------CccccCC--CCCCCCCCc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYE-RP-AL-------------SKAYLFP--EGTARLPGF 66 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~-~~-~~-------------~~~~~~~--~~~~~~~~~ 66 (434)
+.+||+|||||++|+++|..|+++|.+ |+|||+.+..... +. .+ ...+... .....+.+.
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~---v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 87 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVD---VMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR 87 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence 468999999999999999999999987 9999998653211 00 00 0000000 000000000
Q ss_pred ccccC----CC----------CCCCChhhHhhcCcEEEcCCeeEEEECCCCE--EEccCCc---EEEcceEEEecCCCcc
Q 013914 67 HVCVG----SG----------GERLLPEWYKEKGIELILSTEIVRADIASKT--LLSATGL---IFKYQILVIATGSTVL 127 (434)
Q Consensus 67 ~~~~~----~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~~~~~~---~~~~d~lvlAtG~~~~ 127 (434)
..... .. ....+.+.+.+.|++++.+++++++..+... +.+.++. ++++|+||.|.|....
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence 00000 00 0011223344568999999999999876553 4455553 7999999999998653
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-07 Score=87.53 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=78.7
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCe---EEEEccCCccCCc------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKI---NNID---VSMVYPEPWCMPR------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~---~g~~---v~lv~~~~~~~~~------------------------------------ 201 (434)
++|+|||+|+.|+.+|..|.+ .|.+ |+++++.+.+...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 589999999999999999999 9999 9999987542100
Q ss_pred --------------c-CCHHHHHHHHHHHHhcCcE--EEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcc
Q 013914 202 --------------L-FTADIAAFYEGYYANKGIK--IIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGV 259 (434)
Q Consensus 202 --------------~-~~~~~~~~~~~~l~~~GV~--~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~ 259 (434)
+ -..++.+.+.+.+++.|++ ++++++|..++..+++....|++.+ | .++.+|.||+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 0 0145667788888888998 9999999999874443234566544 4 578999999999
Q ss_pred c--CccChh
Q 013914 260 G--GRPLIS 266 (434)
Q Consensus 260 G--~~p~~~ 266 (434)
| .+|+..
T Consensus 163 G~~s~p~~p 171 (464)
T 2xve_A 163 GHFSTPYVP 171 (464)
T ss_dssp CSSSSBCCC
T ss_pred CCCCCCccC
Confidence 9 677654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.2e-08 Score=91.15 Aligned_cols=101 Identities=22% Similarity=0.341 Sum_probs=78.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-c-cCCH---------HHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-R-LFTA---------DIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-~-~~~~---------~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
+..+++|||+|+.|+.+|..|...+.+|+++++.+.+.- + .++. ++.....+.+++.||+++++++|++
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~ 87 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS 87 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence 456899999999999999999888899999998876421 0 0111 1112234567889999999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
++. +.+ .+++++|+++.+|.+|+|||.+|...
T Consensus 88 id~--~~~--~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 88 IDP--NNK--LVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence 986 332 57889999999999999999887653
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=83.08 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=77.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCc---c--------CCc----cCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 165 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEPW---C--------MPR----LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~---~--------~~~----~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
+++|||+|+.|+.+|..|.+.|. +|+++++... + .+. ....++.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999997521 0 111 11256777888888999999998 789
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.+++..+ ....+.+.+|+++.+|.+|+|+|..|..
T Consensus 82 ~~i~~~~--~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 116 (311)
T 2q0l_A 82 QRVSKKD--SHFVILAEDGKTFEAKSVIIATGGSPKR 116 (311)
T ss_dssp EEEEEET--TEEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEEcC--CEEEEEEcCCCEEECCEEEECCCCCCCC
Confidence 9988632 2345777888899999999999977654
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.1e-08 Score=91.78 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=70.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCcc--Cc---------cccCCC--CCCCCCCccccc
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL--SK---------AYLFPE--GTARLPGFHVCV 70 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~--~~---------~~~~~~--~~~~~~~~~~~~ 70 (434)
+++||+|||||++|+++|..|+++|.+ |+|+|+.+......... .. +++... .......+....
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~---V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 98 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGID---CDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD 98 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE
Confidence 468999999999999999999999987 99999986532110000 00 000000 000000000000
Q ss_pred ---C----------------CCCC----CCChhhHhh--cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecC
Q 013914 71 ---G----------------SGGE----RLLPEWYKE--KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATG 123 (434)
Q Consensus 71 ---~----------------~~~~----~~~~~~~~~--~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG 123 (434)
+ .... ..+...+.+ ..++++.++.|+.+..+... +.+.+|+++.+|.||.|+|
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG 178 (407)
T 3rp8_A 99 FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG 178 (407)
T ss_dssp TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence 0 0000 001111111 12788899999999876654 5667888999999999999
Q ss_pred CCccc
Q 013914 124 STVLR 128 (434)
Q Consensus 124 ~~~~~ 128 (434)
.....
T Consensus 179 ~~S~v 183 (407)
T 3rp8_A 179 SHSAL 183 (407)
T ss_dssp TTCSS
T ss_pred cChHH
Confidence 76543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.9e-07 Score=85.45 Aligned_cols=98 Identities=27% Similarity=0.298 Sum_probs=80.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred --cC-----------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 202 --LF-----------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 202 --~~-----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.+ ...+.+.+.+.+++.|++++++++|++++. ++ .+++.+|+++.+|.||.|+|..+..
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCHH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHHH
Confidence 00 045577788888889999999999999986 44 5778889899999999999987654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=91.65 Aligned_cols=100 Identities=21% Similarity=0.326 Sum_probs=78.8
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCCc----------cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
++++|||+|+.|+.+|..|++ .|.+|+++++.+.+.-. ....++...+.+.+++.||+++. .+++.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence 689999999999999999999 89999999998865211 01223444456778889999985 57899
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
++. +++ .+++++|+++.+|.+|+|+|.+|+...+
T Consensus 84 id~--~~~--~V~~~~g~~i~~d~lviAtG~~~~~~~i 117 (437)
T 3sx6_A 84 IDA--EAQ--NITLADGNTVHYDYLMIATGPKLAFENV 117 (437)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred EEc--CCC--EEEECCCCEEECCEEEECCCCCcCcccC
Confidence 976 332 5778899899999999999998876543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.8e-07 Score=82.85 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=77.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC---------Cc---cCCHHHHHHHHHHHHhc-CcEEEcCCeEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM---------PR---LFTADIAAFYEGYYANK-GIKIIKGTVAVG 230 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~---------~~---~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~ 230 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+... +. ....++.+.+.+.+++. +++++.+ +++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEG-RVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEES-CEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-EEEE
Confidence 479999999999999999999999999999643211 10 11246777888888876 7888765 7999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
++..+++ ..+.+.+|+++.+|.+|+|+|.+|...
T Consensus 82 i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 82 AKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred EEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 9873333 578889998999999999999887543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=83.66 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=79.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC--ccC-----------CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+++|||+|+.|+.+|..|.+.|.+|+++++.. .+. +....+++.+.+.+.+++.|++++.++++..+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999996531 110 00012467788888899999999999999999
Q ss_pred EecCC-CcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 232 TTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~-g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
....+ +....+.+++|+++.+|.+|+|+|.+|..
T Consensus 83 ~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 75322 22357788888899999999999987654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=89.02 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC---CCCCC-ccCcc---ccCCCC--------CCCCCCc---
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA---PYERP-ALSKA---YLFPEG--------TARLPGF--- 66 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~---~~~~~-~~~~~---~~~~~~--------~~~~~~~--- 66 (434)
++||+|||||++|+++|..|++.|.+ |+|+|+.+.. ...+. .+... .+.... ......+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGID---NVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 48999999999999999999999987 9999998631 00000 00000 000000 0000000
Q ss_pred --------cc--cc-CCC--------CCCCChhhHhhcCcEEEcCCeeEEEECCC---CEEEc-cCCc--EEEcceEEEe
Q 013914 67 --------HV--CV-GSG--------GERLLPEWYKEKGIELILSTEIVRADIAS---KTLLS-ATGL--IFKYQILVIA 121 (434)
Q Consensus 67 --------~~--~~-~~~--------~~~~~~~~~~~~~v~~~~~~~v~~i~~~~---~~v~~-~~~~--~~~~d~lvlA 121 (434)
.. .. +.. ....+.+.+.+.|++++.++.++++..+. -.+.+ .+|. ++.+|.||.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~A 158 (394)
T 1k0i_A 79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158 (394)
T ss_dssp ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEEC
T ss_pred ECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEEC
Confidence 00 00 000 00112223345689999999999998652 35665 6776 6999999999
Q ss_pred cCCCccccc
Q 013914 122 TGSTVLRLT 130 (434)
Q Consensus 122 tG~~~~~~~ 130 (434)
+|.......
T Consensus 159 dG~~S~vr~ 167 (394)
T 1k0i_A 159 DGFHGISRQ 167 (394)
T ss_dssp CCTTCSTGG
T ss_pred CCCCcHHHH
Confidence 998655433
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=7.2e-07 Score=84.72 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=78.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--------------------cc---------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--------------------RL--------------------- 202 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--------------------~~--------------------- 202 (434)
..|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. .+
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 4799999999999999999999999999998764310 00
Q ss_pred ----------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC---CCcEEEEEeCCCcEEECCEEEE
Q 013914 203 ----------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 203 ----------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~---~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
...++.+.+.+.+++.||+++++++|+++..++ ++. ..+.+.+| ++.+|.||+
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl 162 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV 162 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence 134556778888889999999999999998631 233 46777777 799999999
Q ss_pred cccCccC
Q 013914 258 GVGGRPL 264 (434)
Q Consensus 258 a~G~~p~ 264 (434)
|+|..+.
T Consensus 163 AtG~~s~ 169 (401)
T 2gqf_A 163 ATGGLSM 169 (401)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9998774
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.2e-07 Score=88.65 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=82.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------C---------c--cCCHHH
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------P---------R--LFTADI 207 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------------------------~---------~--~~~~~~ 207 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++.+.+. + . .-.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 479999999999999999999999999999875431 0 0 013577
Q ss_pred HHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc--CccCh
Q 013914 208 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG--GRPLI 265 (434)
Q Consensus 208 ~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G--~~p~~ 265 (434)
.+.+.+..++.|+ .++++++|.+++.++++....|++++|+++.+|.||+|+| .+|+.
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~ 151 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM 151 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence 7888888888888 7999999999987555556788999999999999999999 55554
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-06 Score=86.17 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++.+ +|+++..++++.+..|++.+|+++.+|.||.|+|....
T Consensus 172 ~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 172 ADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 3567778888888899999999 89999875667777889999988999999999997543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-06 Score=85.21 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC--ccC-----------CccCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP--WCM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~--~~~-----------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
....++|||+|+.|+.+|..+++.|.+|+++++.. .+. +....+++.+.+.+.+++.|++++.++++
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v 290 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSA 290 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCE
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEE
Confidence 35579999999999999999999999999997531 111 11123567888888899999999999999
Q ss_pred EEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~-g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+....+ +....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~ 328 (521)
T 1hyu_A 291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328 (521)
T ss_dssp EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99975222 23457888899899999999999977653
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-07 Score=87.65 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
++||+|||||++|+++|+.|+++|.+ |+|||+...
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~---V~vle~~~~ 36 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLN---VLMTDAHMP 36 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 48999999999999999999999987 999999864
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-07 Score=89.01 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
...+.+.+.+.+++.||+++.++.+.++..++++++.++.. .+|+ .+.++.||+|+|.
T Consensus 142 g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg 204 (588)
T 2wdq_A 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG 204 (588)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence 35677778888888999999999999998744677777764 4665 5889999999994
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-07 Score=84.03 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=76.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEcc----CCcc------------CCc----cCCHHHHHHHHHHHHhcCcEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYP----EPWC------------MPR----LFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~----~~~~------------~~~----~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++ ...+ .+. ....++.+.+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4799999999999999999999999999997 2111 111 1134677788888899999999
Q ss_pred cCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 224 ~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++ +..++...++ ..+.+ +|+++.+|.+|+|+|..|..
T Consensus 89 ~~~-v~~i~~~~~~--~~v~~-~~~~~~~~~vv~A~G~~~~~ 126 (333)
T 1vdc_A 89 TET-VTKVDFSSKP--FKLFT-DSKAILADAVILAIGAVAKR 126 (333)
T ss_dssp CCC-CCEEECSSSS--EEEEC-SSEEEEEEEEEECCCEEECC
T ss_pred EeE-EEEEEEcCCE--EEEEE-CCcEEEcCEEEECCCCCcCC
Confidence 987 8888763332 45666 77789999999999987654
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=4e-07 Score=90.88 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc------CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ------GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~------g~~~~~V~vie~~~~~ 43 (434)
.+||||||||+||+++|..|+++ |.+ |+|||+.+..
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~---V~vlEk~~~~ 76 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR---VCLVEKAAHI 76 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC---EEEECSSSST
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCc---EEEEeCCCCC
Confidence 48999999999999999999998 887 9999998653
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.3e-07 Score=82.27 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=77.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCcc----CCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPRL----FTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-----------~~~~~----~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++... ..+.+ ...++.+.+.+.+++.|++++. .++
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 4799999999999999999999999999998721 01110 1246777888888999999988 578
Q ss_pred EEEEecC-CCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~-~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.+++... ++....+.+.+|+++.+|.+|+|+|.+|..
T Consensus 88 ~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 8888731 221134566788899999999999987754
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.2e-07 Score=80.79 Aligned_cols=100 Identities=16% Similarity=0.136 Sum_probs=71.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc----------cC--CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW----------CM--PRLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~----------~~--~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.|+|||+|+.|+.+|..+++.|.+|+++++... +. +...++++.+...+.+.+.+...+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 589999999999999999999999999987531 11 011234556655566666554444444556665
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..+++ ...+.+.+|+++.+|.+|+|||.+|..
T Consensus 88 ~~~~~-~~~v~~~~g~~~~a~~liiATGs~p~~ 119 (304)
T 4fk1_A 88 KQSTG-LFEIVTKDHTKYLAERVLLATGMQEEF 119 (304)
T ss_dssp ECTTS-CEEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred ecCCC-cEEEEECCCCEEEeCEEEEccCCcccc
Confidence 53333 356888999999999999999987754
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.6e-06 Score=81.39 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=76.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC------c------c-CCc----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNI-DVSMVYPEP------W------C-MPR---------------------------- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~------~------~-~~~---------------------------- 201 (434)
.+++|||+|+.|+.+|..|.+.|. +|+++++.+ . + .+.
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 479999999999999999999999 999999875 0 0 000
Q ss_pred cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 202 LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 ~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.....+.+.+.+.+++.|++++.+++|.++...+++ ..+.+.++ ++.+|.||+|+|..+.
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence 001345667778888899999999999999873333 45777777 6899999999998653
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-07 Score=85.32 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||||||+||..|+++|++ |+||||++..
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G~~---V~v~Ek~~~~ 37 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAGHQ---VHLFDKSRGS 37 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCCCC
Confidence 48999999999999999999999998 9999998753
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.2e-07 Score=89.14 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=40.0
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCccee-cccHHHHHHHHHHHHHHHhcc
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR-VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~-~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..|+|.+|.+.||++|++||+|+|+... ..|..+. -.+...+.-.|+.|+++++..
T Consensus 353 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 409 (540)
T 1chu_A 353 TCGGVMVDDHGRTDVEGLYAIGEVSYTG--LHGANRMASNSLLECLVYGWSAAEDITRR 409 (540)
T ss_dssp ESCEEECCTTCBCSSBTEEECGGGEECS--SSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcEEECCCCCCccCCEEecccccccc--ccCCCcCcchhHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999999998421 1122111 134556777788888887654
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-07 Score=89.41 Aligned_cols=99 Identities=13% Similarity=0.236 Sum_probs=74.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +.. .. .+ ...+.+.+++
T Consensus 167 ~~~vvIiGgG~~g~e~A~~l~~~g~~---V~lv~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 220 (455)
T 2yqu_A 167 PKRLIVVGGGVIGLELGVVWHRLGAE---VIVLEYMDRIL---PTM---------DL---EV--------SRAAERVFKK 220 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEecCCccc---ccc---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999985421 000 00 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+. +.+.++.++.+|.+|+|+|.+|+.+
T Consensus 221 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~ 267 (455)
T 2yqu_A 221 QGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE 267 (455)
T ss_dssp HTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCT
T ss_pred CCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCC
Confidence 89999999999999876654 4445778899999999999988754
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-08 Score=92.77 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCccC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
|+|+|||+|+.|+.+|..|++.+ .+|+++++.+.+.-... ..++...+.+.+++.||+++.+ +|++|
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I 81 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI 81 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence 68999999999999999999865 79999999876532101 0111122344567789999877 58999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
+. +.+ .|++++|+++++|.+|+|+|.++.
T Consensus 82 d~--~~~--~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 82 DP--DAN--TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp ET--TTT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred EC--CCC--EEEECCCCEEECCEEEEeCCCCcc
Confidence 86 442 578899999999999999997653
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=88.56 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+|+||||||+||++|..|+++|++ |+|+|+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~---v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIK---VTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC---EEEEecCCCC
Confidence 4799999999999999999999987 9999998653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-07 Score=87.50 Aligned_cols=36 Identities=17% Similarity=0.476 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+++||+|||||++|+++|+.|+++|++ |+|+|+++.
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~~---V~llE~~~~ 37 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGLS---VLMLEAQDL 37 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCCC---EEEEECCCC
Confidence 468999999999999999999999987 999999864
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-06 Score=86.04 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=78.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
...|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 357999999999999999999999999999886543210
Q ss_pred ----------------------------------------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 202 ----------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 202 ----------------------------------------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
.....+.+.+.+.+++.||+++++++|+++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~ 285 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD 285 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence 0012445566777788999999999999998744
Q ss_pred CCcEEEEEeC--CCc--EEECCEEEEcccCc
Q 013914 236 DGEVKEVKLK--DGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 236 ~g~v~~v~~~--~g~--~~~~D~vi~a~G~~ 262 (434)
++++.++.+. +|+ ++.+|.||+|+|..
T Consensus 286 ~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~ 316 (571)
T 1y0p_A 286 KGTVKGILVKGMYKGYYWVKADAVILATGGF 316 (571)
T ss_dssp TSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred CCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence 4777777665 675 68999999999953
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.8e-08 Score=92.68 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++|+++|+.|+++ |.+ |+|||+...
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~---V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRS---LLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCe---EEEEeCCCC
Confidence 48999999999999999999999 887 999999754
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3e-07 Score=92.62 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=35.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|++..+||||||||.||++||+.|++.|.+ |+||||...
T Consensus 1 M~~~~~DVvVIGgG~AGL~AAl~aae~G~~---V~vlEK~~~ 39 (660)
T 2bs2_A 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLS---TIVLSLIPV 39 (660)
T ss_dssp CCEEECSEEEECCSHHHHHHHHHHHTTTCC---EEEECSSCG
T ss_pred CCcccccEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 655578999999999999999999999987 999999864
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=87.08 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------ 201 (434)
-.|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 36999999999999999999999999999986532110
Q ss_pred ---------------------------------------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC
Q 013914 202 ---------------------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD 236 (434)
Q Consensus 202 ---------------------------------------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~ 236 (434)
.....+.+.+.+.+++.||+++++++|+++..+++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 281 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence 00123446667777889999999999999987433
Q ss_pred CcEEEEEeC--CCc--EEECCEEEEcccCc
Q 013914 237 GEVKEVKLK--DGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 237 g~v~~v~~~--~g~--~~~~D~vi~a~G~~ 262 (434)
+++.++.+. +|+ ++.+|.||+|+|..
T Consensus 282 g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~ 311 (566)
T 1qo8_A 282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGY 311 (566)
T ss_dssp SBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred CcEEEEEEEeCCCcEEEEEcCEEEEecCCc
Confidence 777777664 675 68899999999943
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=84.60 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|+++|..|+++ |.+ |+|||+....
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~---V~LiEk~~~~ 116 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLR---ITIVEAGVAP 116 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSC---EEEEESSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCE---EEEEeCCCcc
Confidence 58999999999999999999997 776 9999998653
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-07 Score=86.88 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=73.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC--cc--------CC-HHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP--RL--------FT-ADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~--~~--------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.+.+++|||+|+.|+.+|..|++.| +|+++++.+.... .. .+ .++.....+.+++.||+++.++++..
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 4679999999999999999999999 9999998765321 00 01 11112234567788999999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
++. +.. .|. .+|+++.+|.+|+|||.+|...
T Consensus 86 id~--~~~--~V~-~~g~~~~~d~lViATGs~p~~p 116 (367)
T 1xhc_A 86 IDR--GRK--VVI-TEKGEVPYDTLVLATGARAREP 116 (367)
T ss_dssp EET--TTT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence 976 332 344 5778899999999999887653
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.2e-06 Score=80.51 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=75.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCc----cCCHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR----LFTADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-----------~~~~----~~~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
.+++|||+|+.|+.+|..|.+.|.+|+++++... ..+. ...+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 4799999999999999999999999999985310 0111 1235677788888899999999986 8
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
..++... +. ..+ +.+++++.+|.+|+|+|.+|..
T Consensus 85 ~~i~~~~-~~-~~v-~~~~~~~~~~~lv~AtG~~~~~ 118 (320)
T 1trb_A 85 NKVDLQN-RP-FRL-NGDNGEYTCDALIIATGASARY 118 (320)
T ss_dssp EEEECSS-SS-EEE-EESSCEEEEEEEEECCCEEECC
T ss_pred eEEEecC-CE-EEE-EeCCCEEEcCEEEECCCCCcCC
Confidence 8887632 22 344 5677889999999999987654
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-07 Score=88.81 Aligned_cols=39 Identities=15% Similarity=0.366 Sum_probs=32.2
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|| +.+||+|||||++|+++|..|++.|.++ |+|+|+.+.
T Consensus 1 M~-~~~dVvIVGaG~aGl~~A~~L~~~G~~~--v~v~E~~~~ 39 (410)
T 3c96_A 1 MS-EPIDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSE 39 (410)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSS
T ss_pred CC-CCCeEEEECCCHHHHHHHHHHHhCCCCe--EEEEECCCC
Confidence 44 4689999999999999999999987542 899999865
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=84.22 Aligned_cols=101 Identities=21% Similarity=0.132 Sum_probs=76.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC----c---------------------------------c-
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP----R---------------------------------L- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~----~---------------------------------~- 202 (434)
..+|+|||+|+.|+.+|..|.+.|. +|+++++.+.+.. . .
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 5789999999999999999999999 9999998743210 0 0
Q ss_pred ---------------------------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---E
Q 013914 203 ---------------------------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR---T 249 (434)
Q Consensus 203 ---------------------------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~---~ 249 (434)
....+.+.+.+.+++.++.++++++|++++..+++ ..|++.+ |+ +
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~--~~V~~~~~~~G~~~~~ 163 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPISK 163 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE--EEEEEEESSTTCCEEE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe--EEEEEeecCCCCeeEE
Confidence 01245667777777778889999999999873322 4555554 76 7
Q ss_pred EECCEEEEcccC--ccCh
Q 013914 250 LEADIVVVGVGG--RPLI 265 (434)
Q Consensus 250 ~~~D~vi~a~G~--~p~~ 265 (434)
+.+|.||+|+|. .|+.
T Consensus 164 ~~~d~VVvAtG~~s~p~~ 181 (447)
T 2gv8_A 164 DIFDAVSICNGHYEVPYI 181 (447)
T ss_dssp EEESEEEECCCSSSSBCB
T ss_pred EEeCEEEECCCCCCCCCC
Confidence 999999999997 6654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=79.07 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-----------cCCc---cCCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-----------CMPR---LFTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-----------~~~~---~~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
.+++|||+|+.|+.+|..|++.|.+|+++++... ..+. ....++.+.+.+.+++.|++++. .++.
T Consensus 17 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~ 95 (319)
T 3cty_A 17 FDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEVR 95 (319)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeEE
Confidence 5799999999999999999999999999987421 0111 11256777788888999999998 6788
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
+++...+ ...+.+ ++.++.+|.+|+|+|..|..
T Consensus 96 ~i~~~~~--~~~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 96 SIKKTQG--GFDIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEEEETT--EEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEEeCC--EEEEEE-CCCEEEeCEEEECCCCCccc
Confidence 8876322 234555 56689999999999987654
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.5e-06 Score=82.75 Aligned_cols=101 Identities=17% Similarity=0.149 Sum_probs=79.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------- 200 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~------------------------------------------- 200 (434)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998654300
Q ss_pred --c--------------cCCHHHHHHHHHHHHhc-CcEEEcCCeEEEEEecCCCcEE-EEEeCCCcEEECCEEEEcccCc
Q 013914 201 --R--------------LFTADIAAFYEGYYANK-GIKIIKGTVAVGFTTNADGEVK-EVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 201 --~--------------~~~~~~~~~~~~~l~~~-GV~~~~~~~v~~i~~~~~g~v~-~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
. .....+.+.+.+.+++. |++++++++|++++.++++ +. .+++.+|+++++|.||.|.|..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~g~v~~~~g~~~~ad~vV~AdG~~ 165 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-AIDQVRLNDGRVLRPRVVVGADGIA 165 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-CEEEEEETTSCEEEEEEEEECCCTT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-eEEEEEECCCCEEECCEEEECCCCC
Confidence 0 00124566677777777 9999999999999874443 32 6788899899999999999976
Q ss_pred cCh
Q 013914 263 PLI 265 (434)
Q Consensus 263 p~~ 265 (434)
...
T Consensus 166 s~v 168 (399)
T 2x3n_A 166 SYV 168 (399)
T ss_dssp CHH
T ss_pred hHH
Confidence 543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-07 Score=85.91 Aligned_cols=97 Identities=16% Similarity=0.290 Sum_probs=74.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+... .+ .++. . ......+.+++
T Consensus 145 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l-~~--------------~~~~-~------~~~~l~~~l~~ 199 (408)
T 2gqw_A 145 QSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLM-SR--------------AAPA-T------LADFVARYHAA 199 (408)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-TT--------------TSCH-H------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCE---EEEEEeCCccc-cc--------------ccCH-H------HHHHHHHHHHH
Confidence 47899999999999999999999876 99999985421 00 0000 0 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++ +. .+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 200 ~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~ 241 (408)
T 2gqw_A 200 QGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAND 241 (408)
T ss_dssp TTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEECC
T ss_pred cCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCccH
Confidence 899999999999998 44 7888888899999999999988764
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-07 Score=86.15 Aligned_cols=97 Identities=16% Similarity=0.344 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-------cc-----CCHHHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-------RL-----FTADIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~-------~~-----~~~~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
++++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+ ...++.....+.+++.+++++. +++.
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 8999998763211 00 0111222345667889999999 8999
Q ss_pred EEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 230 GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 230 ~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.++. +++ .+.+.+|+++.+|.+++|||.+|..
T Consensus 81 ~id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~ 112 (404)
T 3fg2_P 81 SIDR--EGR--KLLLASGTAIEYGHLVLATGARNRM 112 (404)
T ss_dssp EEET--TTT--EEEESSSCEEECSEEEECCCEEECC
T ss_pred EEEC--CCC--EEEECCCCEEECCEEEEeeCCCccC
Confidence 9986 332 5778899999999999999987654
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.3e-07 Score=88.63 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCCc----------cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+... ....++...+.+.+++.|++++.+ ++++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 479999999999999999999 89999999988764211 012233445667778899999988 8888
Q ss_pred EEecCCCcEEEEEeCCCc----EEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGR----TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~----~~~~D~vi~a~G~~p~~~ 266 (434)
++. +++ .+++.+++ ++++|.+|+|+|.+|+..
T Consensus 81 i~~--~~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 81 IDA--KSS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EET--TTT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EeC--CCC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 876 333 35555554 389999999999988765
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.8e-07 Score=84.36 Aligned_cols=101 Identities=25% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCccCCHHHH---------HHHHHHHHhcCcEEEcCCeEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIA---------AFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~~~~~~~~---------~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+|+|+|||+|+.|+.+|..|++.+ .+|+++++.+..........+. ..-.+.+.+.||+++.+ +++.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 689999999999999999998865 5899999887643221111111 01123456789999876 58888
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
+. +.+ .+.+.+|+++.+|.+|+|+|.+++....
T Consensus 81 d~--~~~--~v~~~~g~~i~yd~LviAtG~~~~~~~i 113 (401)
T 3vrd_B 81 DP--DKK--LVKTAGGAEFAYDRCVVAPGIDLLYDKI 113 (401)
T ss_dssp ET--TTT--EEEETTSCEEECSEEEECCCEEECGGGS
T ss_pred Ec--cCc--EEEecccceeecceeeeccCCccccCCc
Confidence 76 332 5778999999999999999988876543
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-06 Score=81.23 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=76.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC---cc--------CCc----cCCHHHHHHHHHHHHhcCcEEEcCCe
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP---WC--------MPR----LFTADIAAFYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~---~~--------~~~----~~~~~~~~~~~~~l~~~GV~~~~~~~ 227 (434)
..+++|||+|+.|+.+|..|.+.|.+|+++++.. .+ .+. ....++.+.+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 3579999999999999999999999999998531 00 111 1125677788888899999999987
Q ss_pred EEEEEecCCCcEEEE-EeCCCcEEECCEEEEcccCccCh
Q 013914 228 AVGFTTNADGEVKEV-KLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 228 v~~i~~~~~g~v~~v-~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
+.+++. .+. ..+ .+.+|+++.+|.+|+|+|.+|..
T Consensus 93 v~~i~~-~~~--~~v~~~~~g~~~~~d~lviAtG~~~~~ 128 (335)
T 2a87_A 93 VESVSL-HGP--LKSVVTADGQTHRARAVILAMGAAARY 128 (335)
T ss_dssp EEEEEC-SSS--SEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEEe-CCc--EEEEEeCCCCEEEeCEEEECCCCCccC
Confidence 888876 222 245 67788899999999999987654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1e-06 Score=84.61 Aligned_cols=101 Identities=27% Similarity=0.428 Sum_probs=75.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCccCC-------ccC-----CHHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWCMP-------RLF-----TADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~~~-------~~~-----~~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .++ ...+.....+.+++.||+++.++.|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999997 7999987654310 000 0111111235677899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013914 229 VGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
..++. +++ .+.+.+|+++.+|.+|+|+|.+|+...
T Consensus 84 ~~i~~--~~~--~v~~~~g~~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINR--DRQ--QVILSDGRALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEET--TTT--EEEETTSCEEECSEEEECCCEEECCCG
T ss_pred EEEEC--CCC--EEEECCCCEEECCEEEEcCCCCccCCC
Confidence 99986 332 577788989999999999998886543
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=9.5e-07 Score=85.41 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=73.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++++|||+|++|+.+|..|++.|.+ |+++|+.+...- . .+ . +. ......+.++
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~---Vtlv~~~~~~l~------~-~~----~---~~--------~~~~l~~~l~ 202 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPLG------V-YL----D---KE--------FTDVLTEEME 202 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTT------T-TC----C---HH--------HHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe---EEEEecCccccc------c-cC----C---HH--------HHHHHHHHHH
Confidence 357999999999999999999999876 999999854210 0 00 0 00 0123455667
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
+.|++++.++.+.+++.+.+ .+.+ ++.++.+|.+|+|+|.+|+.+
T Consensus 203 ~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~~~ 249 (447)
T 1nhp_A 203 ANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPNTA 249 (447)
T ss_dssp TTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEESCG
T ss_pred hCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCChH
Confidence 78999999999999987643 2444 556899999999999988754
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.6e-07 Score=85.18 Aligned_cols=99 Identities=14% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+..... . .+. . ......+.+++
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~~~~-------~--------~~~-~------~~~~l~~~l~~ 199 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQ---LDVVAPCEQVMPG-------L--------LHP-A------AAKAVQAGLEG 199 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSSTT-------T--------SCH-H------HHHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCe---EEEEecCcchhhc-------c--------cCH-H------HHHHHHHHHHH
Confidence 57899999999999999999999876 9999997542100 0 000 0 01234556677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++.+.. .+.+.+++++.+|.+|+|+|..|+.
T Consensus 200 ~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 200 LGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp TTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred cCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 8999999999999876544 4666788889999999999988864
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9.7e-07 Score=85.38 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=75.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. . .+ .....+.+++
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~---~~--------~~~l~~~l~~ 220 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL---PSFD---------P---MI--------SETLVEVMNA 220 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTSC---------H---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCE---EEEEEeCCchh---hhhh---------H---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999875421 0000 0 00 1234566777
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+. ..+.+.+|+++.+|.+|+|+|.+|+..
T Consensus 221 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~ 268 (450)
T 1ges_A 221 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND 268 (450)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred CCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence 899999999999998653 257777888899999999999988753
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=7.8e-07 Score=88.64 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.+||+|||+|++|+++|..|++.|.+ |+|+|+.+..
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~---v~~~e~~~~~ 161 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAK---VILLEKEPIP 161 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCC---EEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCC
Confidence 57999999999999999999999987 9999998753
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-06 Score=82.98 Aligned_cols=99 Identities=21% Similarity=0.407 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCe--EEEEccCCccCCc--cCCHHHH---------HHHHHHHHhcCcEEEcCCeEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNID--VSMVYPEPWCMPR--LFTADIA---------AFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~--v~lv~~~~~~~~~--~~~~~~~---------~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
++++|||+|+.|+.+|..|.+.|.+ |+++++.+.+.-. .+...+. ....+.+++.|++++.++++..
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 4899999999999999999999977 9999887654210 0111111 1123456788999999999999
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
++. +.+ .+.+.+|+++.+|.+|+|||.+|...
T Consensus 83 id~--~~~--~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 83 LDV--QTR--TISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp EET--TTT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEC--CCC--EEEECCCCEEECCEEEEccCCcccCC
Confidence 986 332 57788999999999999999876643
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.6e-07 Score=86.77 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=72.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||++|+.+|..|++.|.+ |+++++.+... +.. .. .+ .....+.+++
T Consensus 171 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 224 (458)
T 1lvl_A 171 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL---PTY---------DS---EL--------TAPVAESLKK 224 (458)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEEcCCccc---ccc---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999986421 000 00 00 1233456777
Q ss_pred cCcEEEcCCeeEEEECCCCEEEcc--CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~--~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++. .+ +.+. +| .++.+|.+++|+|.+|+.+
T Consensus 225 ~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~ 271 (458)
T 1lvl_A 225 LGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTK 271 (458)
T ss_dssp HTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCS
T ss_pred CCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCC
Confidence 8999999999999987 43 4333 45 5899999999999998754
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=78.24 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=75.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---C-------------Cc----cCCHHHHHHHHHHHHhcCcEEEc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---M-------------PR----LFTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~---~-------------~~----~~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
.++|||+|+.|+.+|..+++.|.+|+++++.+.- + +. ...+++.+.+.+.+++.++++..
T Consensus 6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~~ 85 (314)
T 4a5l_A 6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIIT 85 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEEC
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEEE
Confidence 5899999999999999999999999999875320 0 00 11256778888889999999886
Q ss_pred CCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 225 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 225 ~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.. +.......+ ...+.+.++.++.+|.+|+|||.+|..
T Consensus 86 ~~-v~~~~~~~~--~~~~~~~~~~~~~~~~liiATG~~~~~ 123 (314)
T 4a5l_A 86 ET-IDHVDFSTQ--PFKLFTEEGKEVLTKSVIIATGATAKR 123 (314)
T ss_dssp CC-EEEEECSSS--SEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred eE-EEEeecCCC--ceEEEECCCeEEEEeEEEEcccccccc
Confidence 65 555554222 346677888899999999999987754
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.7e-07 Score=85.74 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +.. .. .+ .....+.+++
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 222 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGAE---VTLIEYMPEIL---PQG---------DP---ET--------AALLRRALEK 222 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEEcCCccc---ccc---------CH---HH--------HHHHHHHHHh
Confidence 36899999999999999999999876 99999975421 000 00 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc-C--Cc--EEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA-T--GL--IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~-~--~~--~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+. +.+. + |+ ++.+|.+++|+|.+|+..
T Consensus 223 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 274 (464)
T 2eq6_A 223 EGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTE 274 (464)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCT
T ss_pred cCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCC
Confidence 89999999999999865543 4444 5 65 799999999999988754
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.7e-06 Score=80.79 Aligned_cols=101 Identities=20% Similarity=0.359 Sum_probs=74.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----cCCHHHHHH---------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFTADIAAF--------------------------- 210 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----~~~~~~~~~--------------------------- 210 (434)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+..... .+.+...+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987653111 012222111
Q ss_pred ----------------HHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 211 ----------------YEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 211 ----------------~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
+.+.|.+ .|++++++++|++++.++++ ..+++.+|+++.+|.||.|.|.....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S~v 155 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV 155 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE--EEEEECCCCEEECCEEEECCCcchhH
Confidence 2222222 38899999999999874444 46888999999999999999976543
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=9e-07 Score=87.80 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++|+++|..|+++|.+ |+|||+.+.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~---V~vlEr~~~ 60 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVG---HLVVEQTDG 60 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 57999999999999999999999987 999999865
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=84.86 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=75.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 166 ~~~vvVvGgG~~g~e~A~~l~~~G~~---Vtlv~~~~~~l---~----------------~~~~~----~~~~l~~~l~~ 219 (463)
T 2r9z_A 166 PKRVAIIGAGYIGIELAGLLRSFGSE---VTVVALEDRLL---F----------------QFDPL----LSATLAENMHA 219 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCE---EEEEEcCCccc---c----------------ccCHH----HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875421 0 00000 01233566778
Q ss_pred cCcEEEcCCeeEEEECCC--CEEEccCCc-EEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS--KTLLSATGL-IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v~~~~~~-~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+. ..+.+.+|+ ++.+|.+++|+|.+|+..
T Consensus 220 ~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~ 267 (463)
T 2r9z_A 220 QGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR 267 (463)
T ss_dssp TTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence 899999999999997644 356777888 899999999999988753
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=83.32 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=75.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+...- + .... . ....+.+.+++
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtvv~~~~~~l~-~----------~~~~---~--------~~~~l~~~l~~ 206 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTKFGVN---VTLLEALPRVLA-R----------VAGE---A--------LSEFYQAEHRA 206 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTT-T----------TSCH---H--------HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCe---EEEEecCCchhh-h----------hcCH---H--------HHHHHHHHHHh
Confidence 56899999999999999999999876 999999864210 0 0000 0 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.++..+.. .+.+.+|+++.+|.+|+|+|..|+.
T Consensus 207 ~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~ 253 (415)
T 3lxd_A 207 HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV 253 (415)
T ss_dssp TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESC
T ss_pred CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccCh
Confidence 8999999999999987543 4777889899999999999998864
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=83.98 Aligned_cols=100 Identities=20% Similarity=0.363 Sum_probs=71.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCC------ccC-----CHHHHHHHHHHH-HhcCcEEEcCCeE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP------RLF-----TADIAAFYEGYY-ANKGIKIIKGTVA 228 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~------~~~-----~~~~~~~~~~~l-~~~GV~~~~~~~v 228 (434)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+.. ..+ ..++.....+.+ ++.|+++++++++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 46899999999999999999998 789999998875421 100 111122222333 6889999999999
Q ss_pred EEEEecCCCcEEEEEeCCC-cEEECCEEEEcccCccChh
Q 013914 229 VGFTTNADGEVKEVKLKDG-RTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~~~g-~~~~~D~vi~a~G~~p~~~ 266 (434)
..++. ++ ..+.+.++ .++.+|.+|+|||.+|...
T Consensus 83 ~~i~~--~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 83 IEVDT--GY--VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEECS--SE--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEEec--CC--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 99864 22 45667777 4799999999999877643
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=85.31 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~----------------~~~~~----~~~~l~~~l~~ 223 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL---S----------------GFEKQ----MAAIIKKRLKK 223 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc---c----------------ccCHH----HHHHHHHHHHH
Confidence 47899999999999999999999876 99999975421 0 00000 01234456778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc---CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA---TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~---~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+... +.+. ++.++.+|.+++|+|.+|+..
T Consensus 224 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 273 (455)
T 1ebd_A 224 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTD 273 (455)
T ss_dssp TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCS
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccC
Confidence 89999999999999865543 3333 446799999999999988753
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-06 Score=77.63 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~ 43 (434)
.+||+|||||++|+++|..|++. |.+ |+|+|+.+..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~---V~v~e~~~~~ 102 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCe---EEEEecCccc
Confidence 46999999999999999999998 776 9999998654
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=83.89 Aligned_cols=101 Identities=12% Similarity=0.232 Sum_probs=73.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC--Cc----cCCH------HHHHHHHHHHHhcCcEEEcCCeEE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM--PR----LFTA------DIAAFYEGYYANKGIKIIKGTVAV 229 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~--~~----~~~~------~~~~~~~~~l~~~GV~~~~~~~v~ 229 (434)
++++|||+|+.|+.+|..|++. |.+|+++++.+.+. +. .... ++.....+.+++.|++++.+++|.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 89999999887643 10 0111 111113467788999999999999
Q ss_pred EEEecCCCcEEEEE-eCCCcEEECCEEEEcccCccChh
Q 013914 230 GFTTNADGEVKEVK-LKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 230 ~i~~~~~g~v~~v~-~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+++. +.+...+. ..+++++.+|.+|+|+|.+|...
T Consensus 83 ~id~--~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 83 AMDV--ENQLIAWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEET--TTTEEEEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEEC--CCCEEEEEecCceEEEEcCEEEECCCcccCCC
Confidence 9986 33333343 23456799999999999988654
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-06 Score=82.11 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=76.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------Cc------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~-----------------------~~------------------ 201 (434)
-.|+|||+|+.|+++|..+++.|.+|.++++.+. +. ..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999987631 10 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 202 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 -----------~~~-~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+ ..+.+.+.+.+++ .|++++ +..|+.+.. +++.+.+|.+.+|.++.||.||+|+|..+.
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 001 1345666777777 699995 568999976 456777899999988999999999997543
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=6.9e-07 Score=90.25 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~ 42 (434)
..+||+|||||++|+++|..|++ .|.+ |+|||+.+.
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~---V~viEr~~~ 67 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIR---TCIVEQKEG 67 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSC---EEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCC---EEEEeCCCC
Confidence 35799999999999999999999 8987 999999865
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=7.9e-07 Score=88.93 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+||||||||+||++||..|++.|.+ |+||||...
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~~G~~---V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSEAGFN---TACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 57999999999999999999999987 999999854
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.5e-06 Score=77.08 Aligned_cols=100 Identities=17% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEE-EccCCcc------------CCc----cCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSM-VYPEPWC------------MPR----LFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~l-v~~~~~~------------~~~----~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
..+++|||+|+.|+.+|..|.+.|.+|++ +++. .+ .+. ....++...+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence 45899999999999999999999999999 8863 21 111 112578888889999999999998
Q ss_pred CeEEEEEecCCCcEEEEEe-CCCcEEECCEEEEcccCccChh
Q 013914 226 TVAVGFTTNADGEVKEVKL-KDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 226 ~~v~~i~~~~~g~v~~v~~-~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
++.++ .+++.....+.+ .++ ++.+|.+|+|+|.+|+..
T Consensus 83 -~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 83 -GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp -CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred -EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence 78888 522112234323 334 899999999999877643
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=86.63 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=76.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC----------Ccc-CC--HHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM----------PRL-FT--ADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~----------~~~-~~--~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
..++++|||+|+.|+.+|..|++. |.+|+++++.+.+. ... .+ ..+...+....++.|+++++++
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 114 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLS 114 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSE
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECC
Confidence 457899999999999999999998 89999999987642 000 01 1123445566678899999999
Q ss_pred eEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013914 227 VAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~~~ 266 (434)
.|.+++. +.+...+.. .+|+ ++.+|.+|+|||.+|...
T Consensus 115 ~V~~id~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (588)
T 3ics_A 115 EVVKINK--EEKTITIKNVTTNETYNEAYDVLILSPGAKPIVP 155 (588)
T ss_dssp EEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEEEC--CCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence 9999986 333334433 4565 789999999999877643
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=82.45 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..+++.|.+ |+++++.+...- ...... .....+.+++
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~ll~------------~~d~~~-----------~~~~~~~l~~ 200 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGLH---PTLIHRSDKINK------------LMDADM-----------NQPILDELDK 200 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSSCCST------------TSCGGG-----------GHHHHHHHHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCCc---ceeeeeeccccc------------cccchh-----------HHHHHHHhhc
Confidence 45899999999999999999999876 999999864210 000000 1234567788
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++ ...+.+.+++++.+|.+++|+|.+|+.
T Consensus 201 ~gV~i~~~~~v~~~~--~~~v~~~~g~~~~~D~vl~a~G~~Pn~ 242 (437)
T 4eqs_A 201 REIPYRLNEEINAIN--GNEITFKSGKVEHYDMIIEGVGTHPNS 242 (437)
T ss_dssp TTCCEEESCCEEEEE--TTEEEETTSCEEECSEEEECCCEEESC
T ss_pred cceEEEeccEEEEec--CCeeeecCCeEEeeeeEEEEeceecCc
Confidence 899999999999876 456888899999999999999988864
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=7e-06 Score=81.20 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=76.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------Cc------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~-----------------------~~------------------ 201 (434)
-.|+|||+|+.|+++|..+++.|.+|.++++.+. +. ..
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999987631 10 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 202 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 -----------~~~-~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+ ..+.+.+.+.+++ .|++++ +..|+++.. +++.+.+|.+.+|.++.+|.||+|+|..++
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 001 1345566677777 599995 678999876 467777899999999999999999997654
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=81.14 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=76.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------Cc------------cC----------------CHHH
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR------------LF----------------TADI 207 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~------------~~----------------~~~~ 207 (434)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+. +. .+ .+++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 379999999999999999999999999999875421 00 01 1345
Q ss_pred HHHHHHHHHhcC--cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 208 AAFYEGYYANKG--IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 208 ~~~~~~~l~~~G--V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+++....++.+ ++++++++|.+++.++++....|++++|+++.+|.||+|+|.
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~ 152 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQ 152 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCC
Confidence 566666667765 678999999999875554456788899989999999999994
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=5.2e-06 Score=78.76 Aligned_cols=101 Identities=16% Similarity=0.183 Sum_probs=76.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------CCc------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------MPR------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~------~~~------------------------------------ 201 (434)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.. ...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 37999999999999999999999999999987631 000
Q ss_pred ----------------cCC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccC
Q 013914 202 ----------------LFT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 202 ----------------~~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~ 261 (434)
.++ ..+.+.+.+.+.+.|++++++++|+++..++++. ..+++ .+|+ ++.+|+||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~-~~v~~~~~g~~~~~~a~~vV~AdG~ 161 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER-PYVTFERDGERLRLDCDYIAGCDGF 161 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS-CEEEEEETTEEEEEECSEEEECCCT
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc-eEEEEecCCcEEEEEeCEEEECCCC
Confidence 001 2345566777777899999999999998643332 34666 6886 7999999999997
Q ss_pred ccCh
Q 013914 262 RPLI 265 (434)
Q Consensus 262 ~p~~ 265 (434)
....
T Consensus 162 ~S~v 165 (394)
T 1k0i_A 162 HGIS 165 (394)
T ss_dssp TCST
T ss_pred CcHH
Confidence 6554
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-06 Score=83.38 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. . .+ .....+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~---~~--------~~~l~~~l~~ 238 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSE---THLVIRGETVL---RKFD---------E---CI--------QNTITDHYVK 238 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCE---EEEECSSSSSC---TTSC---------H---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEeCCccc---cccC---------H---HH--------HHHHHHHHHh
Confidence 46899999999999999999999876 99999985421 0000 0 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCC----CEEEccCC-cEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIAS----KTLLSATG-LIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~~v~~~~~-~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.++..+. ..+.+.+| +++.+|.+|+|+|.+|+.
T Consensus 239 ~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 239 EGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred CCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 899999999999997642 25677788 789999999999988875
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.7e-07 Score=83.14 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||++++||+|||||++|+++|++|+++|.+ |+|||+...
T Consensus 2 ~m~~~~dVvVIG~Gi~Gls~A~~La~~G~~---V~vle~~~~ 40 (363)
T 1c0p_A 2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP 40 (363)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhCCCE---EEEEeccCC
Confidence 677789999999999999999999999886 999999863
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-06 Score=77.13 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=73.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------CCHHHH-----------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------FTADIA----------------------------- 208 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------~~~~~~----------------------------- 208 (434)
-+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +.+...
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 81 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY 81 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence 379999999999999999999999999999865442210 111111
Q ss_pred ------------------------------HHHHHHH-HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEE
Q 013914 209 ------------------------------AFYEGYY-ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVV 257 (434)
Q Consensus 209 ------------------------------~~~~~~l-~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~ 257 (434)
..+.+.| +..+..+++++++++++..+++.+ .++++||+++++|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVg 160 (412)
T 4hb9_A 82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGI-KIFFADGSHENVDVLVG 160 (412)
T ss_dssp CTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEE
T ss_pred cCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEE
Confidence 1222233 223556889999999987556554 68999999999999999
Q ss_pred cccCccC
Q 013914 258 GVGGRPL 264 (434)
Q Consensus 258 a~G~~p~ 264 (434)
|-|....
T Consensus 161 ADG~~S~ 167 (412)
T 4hb9_A 161 ADGSNSK 167 (412)
T ss_dssp CCCTTCH
T ss_pred CCCCCcc
Confidence 9997543
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=82.74 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=74.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+++++.+... +.+ .. .+ .....+.+++
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~---------d~---~~--------~~~l~~~l~~ 229 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL---RKF---------DE---SV--------INVLENDMKK 229 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCCe---EEEEecCCccC---ccc---------ch---hh--------HHHHHHHHHh
Confidence 46899999999999999999998876 99999975421 000 00 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCCcE-EEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATGLI-FKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~-~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++.+. ..+.+.+|++ +.+|.+++|+|.+|+.
T Consensus 230 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 230 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred CCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 899999999999998643 2567778877 9999999999999875
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-06 Score=83.07 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=77.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-----CeEEEEccCCccCC-------c-------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN-----IDVSMVYPEPWCMP-------R------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-----~~v~lv~~~~~~~~-------~------------------------------- 201 (434)
.|+|||+|+.|+.+|..|.+.| .+|+++++.+.+.- .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 7999999999999999999999 99999988763210 0
Q ss_pred ----------c--CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcE--EEEEeCCCc----EEECCEEEEcccCc
Q 013914 202 ----------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEV--KEVKLKDGR----TLEADIVVVGVGGR 262 (434)
Q Consensus 202 ----------~--~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-g~v--~~v~~~~g~----~~~~D~vi~a~G~~ 262 (434)
. ...++.+.+....++.+++++++++|.+++..++ +.. ..|.+.+|+ ++.+|.||+|+|..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~ 191 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT 191 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence 0 0134556666667777999999999999986321 332 256666765 89999999999987
Q ss_pred cChh
Q 013914 263 PLIS 266 (434)
Q Consensus 263 p~~~ 266 (434)
|...
T Consensus 192 p~~p 195 (463)
T 3s5w_A 192 PRIP 195 (463)
T ss_dssp ECCC
T ss_pred CCCc
Confidence 7643
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.6e-06 Score=77.60 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
.+.+.+.+.+++.|++++.+++|+++..+ ++.+ .+.+.+| ++.+|.||+|+|...
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWS 219 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhH
Confidence 45667778888899999999999999873 3444 6778777 899999999999754
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=7e-06 Score=79.44 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=78.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----c--------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----R-------------------------------------- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----~-------------------------------------- 201 (434)
..|+|||+|+.|+.+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 4799999999999999999999999999998754210 0
Q ss_pred ---------cC-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCccCh
Q 013914 202 ---------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGRPLI 265 (434)
Q Consensus 202 ---------~~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~~p~~ 265 (434)
.+ ...+.+.+.+.+++.|++++.+++|+++.. +++.+.+|++. +|+ ++.+|.||.|+|.....
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIF-EDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence 00 124566777778889999999999999987 34555555554 675 78999999999965543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.8e-06 Score=82.71 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccC------CccCC------HH-------HHHHHHHHHHhcCcE
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCM------PRLFT------AD-------IAAFYEGYYANKGIK 221 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~------~~~~~------~~-------~~~~~~~~l~~~GV~ 221 (434)
.++++|||+|+.|+.+|..|++. |.+|+++++.+.+. +..+. .+ +........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 89999999987641 11111 11 122223333458999
Q ss_pred EEcCCeEEEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013914 222 IIKGTVAVGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 222 ~~~~~~v~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~~~ 266 (434)
++++++|.+++. +++...+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 83 ~~~~~~V~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 83 ALVETRAHAIDR--AAHTVEIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp EECSEEEEEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEECCEEEEEEC--CCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999999999986 333333432 3465 789999999999877643
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=82.54 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=75.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
..+++|||+|+.|+.+|..|++. |.+ |+++++.+... + .+... ......+.
T Consensus 187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~----------------~~d~~----~~~~l~~~ 240 (490)
T 1fec_A 187 PKRALCVGGGYISIEFAGIFNAYKARGGQ---VDLAYRGDMIL---R----------------GFDSE----LRKQLTEQ 240 (490)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCE---EEEEESSSSSS---T----------------TSCHH----HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhccCcCe---EEEEEcCCCcc---c----------------ccCHH----HHHHHHHH
Confidence 46899999999999999999998 775 99999985421 0 00000 01234566
Q ss_pred HhhcCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEecCCCccc
Q 013914 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
+++.|++++.++.+.++..+. ..+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 241 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 241 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 778899999999999998654 25677788889999999999998875
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-06 Score=82.51 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc---CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ---GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEW 81 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~---g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
..+++|||+|+.|+.+|..|++. |.+ |+++++.+... + .+... ......+.
T Consensus 191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~---Vtlv~~~~~~l---~----------------~~d~~----~~~~l~~~ 244 (495)
T 2wpf_A 191 PRRVLTVGGGFISVEFAGIFNAYKPPGGK---VTLCYRNNLIL---R----------------GFDET----IREEVTKQ 244 (495)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCE---EEEEESSSSSC---T----------------TSCHH----HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhCCCCCe---EEEEEcCCccc---c----------------ccCHH----HHHHHHHH
Confidence 46899999999999999999998 776 99999975421 0 00000 01234566
Q ss_pred HhhcCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEecCCCcccc
Q 013914 82 YKEKGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
+++.|++++.++.+.+++.+. ..+.+.+|+++.+|.+|+|+|.+|+..
T Consensus 245 l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~ 295 (495)
T 2wpf_A 245 LTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN 295 (495)
T ss_dssp HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred HHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence 778899999999999998653 257777888899999999999988753
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.6e-06 Score=83.13 Aligned_cols=99 Identities=15% Similarity=0.330 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.+. . .+ .....+.+++
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~~~~---------~---~~--------~~~l~~~l~~ 236 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG---ASMD---------G---EV--------AKATQKFLKK 236 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---SSSC---------H---HH--------HHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEEeCCccc---cccC---------H---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999985421 0000 0 00 1234566778
Q ss_pred cCcEEEcCCeeEEEEC--CCC--EEEcc-----CCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADI--ASK--TLLSA-----TGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~--~~~--~v~~~-----~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++. +.+ .+.+. ++.++.+|.+|+|+|.+|+..
T Consensus 237 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 237 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA 290 (478)
T ss_dssp TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred CCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence 8999999999999986 444 34443 346799999999999988754
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-05 Score=78.76 Aligned_cols=101 Identities=22% Similarity=0.329 Sum_probs=79.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEccCCccCCc------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPEPWCMPR------------------------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~------g~~v~lv~~~~~~~~~------------------------------------ 201 (434)
-.|+|||+|+.|+.+|..|++. |.+|+++++.+.+...
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999876432100
Q ss_pred --------cC---C--------------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC------CC---
Q 013914 202 --------LF---T--------------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK------DG--- 247 (434)
Q Consensus 202 --------~~---~--------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~------~g--- 247 (434)
.+ + ..+.+.+.+.+++.||++++++.+.++..++++.+.+|.+. +|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 00 1 14566777888889999999999999987556777778776 33
Q ss_pred ------cEEECCEEEEcccCccC
Q 013914 248 ------RTLEADIVVVGVGGRPL 264 (434)
Q Consensus 248 ------~~~~~D~vi~a~G~~p~ 264 (434)
.++.+|.||.|.|....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCceEEECCEEEEeeCCCch
Confidence 68999999999997654
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.8e-06 Score=82.80 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=74.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||+|..|+.+|..|++.|.+ |+++++.+... +.+ .. .+ ...+.+.+++.
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~---Vtlv~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~~ 268 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK---LIK---------DN---ET--------RAYVLDRMKEQ 268 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---TCC---------SH---HH--------HHHHHHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCe---EEEEEecCccc---ccc---------cH---HH--------HHHHHHHHHhC
Confidence 7899999999999999999999876 99999985421 000 00 00 12345667788
Q ss_pred CcEEEcCCeeEEEECC--C----CEEEccCCc-EEEcceEEEecCCCcccc
Q 013914 86 GIELILSTEIVRADIA--S----KTLLSATGL-IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~--~----~~v~~~~~~-~~~~d~lvlAtG~~~~~~ 129 (434)
|++++.++.+.++..+ . ..+.+.+|+ ++.+|.+|+|+|.+|+..
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~ 319 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA 319 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence 9999999999999863 2 235666776 899999999999998753
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=79.43 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=78.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC------------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------ 200 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~------------------------------------------ 200 (434)
...|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 46899999999999999999999999999998631100
Q ss_pred ---------------------ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-CC--cEEECCEEE
Q 013914 201 ---------------------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-DG--RTLEADIVV 256 (434)
Q Consensus 201 ---------------------~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~-~g--~~~~~D~vi 256 (434)
..-...+.+.+.+.+++.|++++.+++|+++..+ ++....|.+. +| .++.+|.||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV 181 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVI 181 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEE
Confidence 0001345667778888899999999999999863 4555677776 67 579999999
Q ss_pred EcccCcc
Q 013914 257 VGVGGRP 263 (434)
Q Consensus 257 ~a~G~~p 263 (434)
.|+|...
T Consensus 182 ~AdG~~S 188 (591)
T 3i3l_A 182 DAGGSGG 188 (591)
T ss_dssp ECCGGGC
T ss_pred ECCCCcc
Confidence 9999755
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.2e-06 Score=83.65 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=73.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+|+++.+... +.+ .. .+ .....+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 238 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM---QGA---------DR---DL--------VKVWQKQNEY 238 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHGG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc---ccc---------CH---HH--------HHHHHHHHHh
Confidence 46899999999999999999999876 99999985421 000 00 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccC----CcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSAT----GLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~----~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++.+.+ .+.+.+ ++++.+|.+++|+|.+|+.
T Consensus 239 ~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 239 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred cCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 8999999999999976543 355555 6678999999999998875
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=73.77 Aligned_cols=98 Identities=14% Similarity=0.107 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---cC--------Cc---cCCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---CM--------PR---LFTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~---~~--------~~---~~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.++|||+|+.|+.+|..+++.|.+|+++++... ++ +. ...+++.........+.+..+..+.....
T Consensus 8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (312)
T 4gcm_A 8 DIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSV 87 (312)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeeee
Confidence 589999999999999999999999999986531 10 10 12356777777788888888888876665
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
... .. ......+++++.+|.+|+|||.+|...
T Consensus 88 ~~~--~~--~~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 88 EDK--GE--YKVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EEC--SS--CEEEECSSCEEEEEEEEECCCEEECCC
T ss_pred eee--ec--ceeeccCCeEEEeceeEEcccCccCcC
Confidence 554 22 234556778999999999999877543
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-06 Score=81.71 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=73.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 171 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~----------------~~~~~----~~~~l~~~l~~ 224 (464)
T 2a8x_A 171 PKSIIIAGAGAIGMEFGYVLKNYGVD---VTIVEFLPRAL---P----------------NEDAD----VSKEIEKQFKK 224 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEEcCCccc---c----------------ccCHH----HHHHHHHHHHH
Confidence 46899999999999999999999876 99999985421 0 00000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEcc-CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSA-TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~-~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+.. .+.+. ++ .++.+|.+++|+|.+|+..
T Consensus 225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~ 274 (464)
T 2a8x_A 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVE 274 (464)
T ss_dssp HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCS
T ss_pred cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCC
Confidence 8999999999999986553 34443 55 5799999999999988653
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.6e-06 Score=81.53 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||+.|+.+|..|++.|.+ |+++++.+...- . .+ .. .+ .....+.+++
T Consensus 194 ~~~vvVIGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l~------~-~~----~~---~~--------~~~l~~~l~~ 248 (490)
T 2bc0_A 194 IKRVAVVGAGYIGVELAEAFQRKGKE---VVLIDVVDTCLA------G-YY----DR---DL--------TDLMAKNMEE 248 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTT------T-TS----CH---HH--------HHHHHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCe---EEEEEcccchhh------h-HH----HH---HH--------HHHHHHHHHh
Confidence 47899999999999999999999876 999999854210 0 00 00 00 1234556777
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.+ .+.+ ++.++.+|.+|+|+|.+|+..
T Consensus 249 ~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ 294 (490)
T 2bc0_A 249 HGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTT 294 (490)
T ss_dssp TTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCG
T ss_pred CCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChH
Confidence 8999999999999986443 3444 667899999999999988654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-06 Score=81.46 Aligned_cols=100 Identities=14% Similarity=0.227 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... + . .+... ......+.+++
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~---~------------~~~~~----~~~~l~~~l~~ 232 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGAD---VTAVEFLGHVG---G---V------------GIDME----ISKNFQRILQK 232 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---C---S------------SCCHH----HHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCE---EEEEeccCccC---C---c------------ccCHH----HHHHHHHHHHH
Confidence 46899999999999999999999876 99999985421 0 0 00000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC---EEE-----ccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLL-----SATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~-----~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.. .+. ..++.++.+|.+|+|+|.+|+..
T Consensus 233 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 285 (474)
T 1zmd_A 233 QGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTK 285 (474)
T ss_dssp TTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCT
T ss_pred CCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCC
Confidence 8999999999999987653 233 23556899999999999988653
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=82.06 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=75.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..+++.|.+ |+|++++...+. +... ........+++
T Consensus 223 P~~lvIIGgG~IGlE~A~~~~~lG~~---VTii~~~~~L~~--------------------~D~e----i~~~l~~~l~~ 275 (542)
T 4b1b_A 223 PGKTLVVGASYVALECSGFLNSLGYD---VTVAVRSIVLRG--------------------FDQQ----CAVKVKLYMEE 275 (542)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCC---EEEEESSCSSTT--------------------SCHH----HHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCe---EEEecccccccc--------------------cchh----HHHHHHHHHHh
Confidence 47899999999999999999999987 999987643211 0000 01234566788
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.+..+..+...... +.+.++.++.+|.+++|+|-+|+..
T Consensus 276 ~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~ 322 (542)
T 4b1b_A 276 QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDID 322 (542)
T ss_dssp TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCG
T ss_pred hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCcc
Confidence 99999999999888776654 4556777899999999999988754
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.5e-06 Score=75.35 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=69.7
Q ss_pred cEEEECCCHHHHHHHHHHHh---CCCeEEEEccCCccCCc-------------------cC---CH---HH---------
Q 013914 165 KAVVVGGGYIGLELSAALKI---NNIDVSMVYPEPWCMPR-------------------LF---TA---DI--------- 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~~~~~~-------------------~~---~~---~~--------- 207 (434)
+|+|||+|..|+-+|..|.+ .|.+|+++++.+.+..+ ++ +. .+
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 99999999976432110 00 00 11
Q ss_pred -----------------------------HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 208 -----------------------------AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 208 -----------------------------~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
...+..+.++.|++++++++|+++..++++ ..+.+.+|+++.+|.||+|
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vV~A 160 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK--WEVSKQTGSPEQFDLIVLT 160 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS--EEEEESSSCCEEESEEEEC
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEEC
Confidence 112223344458999999999999984444 4688888987899999999
Q ss_pred cc
Q 013914 259 VG 260 (434)
Q Consensus 259 ~G 260 (434)
++
T Consensus 161 ~p 162 (342)
T 3qj4_A 161 MP 162 (342)
T ss_dssp SC
T ss_pred CC
Confidence 98
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=5.9e-06 Score=80.97 Aligned_cols=98 Identities=15% Similarity=0.255 Sum_probs=74.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.+ .. .+ .....+.+++
T Consensus 182 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~---------d~---~~--------~~~l~~~l~~ 235 (499)
T 1xdi_A 182 PDHLIVVGSGVTGAEFVDAYTELGVP---VTVVASQDHVL---PYE---------DA---DA--------ALVLEESFAE 235 (499)
T ss_dssp CSSEEEESCSHHHHHHHHHHHHTTCC---EEEECSSSSSS---CCS---------SH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---ccc---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999885421 000 00 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.|.++..+.. .+.+.++.++.+|.+|+|+|.+|+.
T Consensus 236 ~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 236 RGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp TTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 8999999999999987653 3455677789999999999998875
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-06 Score=83.65 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=72.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCc----------cC-C--HHHHHHHHHHHHhcCcEEEcCCeE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR----------LF-T--ADIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~----------~~-~--~~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
++++|||+|+.|+.+|..|++. +.+|+++++.+.+.-. .+ + ..+.+......++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 5799999999999999999998 7999999998764210 00 0 011222344455689999999999
Q ss_pred EEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013914 229 VGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~~~ 266 (434)
.+++. +++...+.. .+|+ ++.+|.+|+|||.+|...
T Consensus 82 ~~id~--~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p 120 (565)
T 3ntd_A 82 VAIDR--AAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVP 120 (565)
T ss_dssp EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEC--CCCEEEEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence 99986 333334433 3354 789999999999877643
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=78.85 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------------- 201 (434)
...|+|||+|+.|+.+|..+.+.|.+|+++++.+.+...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 358999999999999999999999999999886533100
Q ss_pred --------------------------------------c--------CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC
Q 013914 202 --------------------------------------L--------FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 235 (434)
Q Consensus 202 --------------------------------------~--------~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~ 235 (434)
. ....+.+.+.+.+++.||+++++++++++..++
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence 0 012344566777788999999999999998633
Q ss_pred CCcEEEEEeC--CCc--EEECCEEEEcccCcc
Q 013914 236 DGEVKEVKLK--DGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 236 ~g~v~~v~~~--~g~--~~~~D~vi~a~G~~p 263 (434)
++++.+|.+. +|+ ++.+|.||+|+|..+
T Consensus 286 ~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 286 SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp -CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence 3777777665 664 688999999999544
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.2e-05 Score=70.42 Aligned_cols=166 Identities=15% Similarity=0.136 Sum_probs=102.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCcc-------------------------------------C
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRL-------------------------------------F 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~-------------------------------------~ 203 (434)
...++|||+|+.|+.+|..|++. |.+|+++++.+.+.... .
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~ 144 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKH 144 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcc
Confidence 45899999999999999999998 99999999865432100 0
Q ss_pred CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecC--C-C--cEEEEEeC--------------CCcEEEC-----------
Q 013914 204 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNA--D-G--EVKEVKLK--------------DGRTLEA----------- 252 (434)
Q Consensus 204 ~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~--~-g--~v~~v~~~--------------~g~~~~~----------- 252 (434)
..++...+.+.+.+ .||+++.++++.++..++ + + ++.++.+. ++.++.+
T Consensus 145 ~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~ 224 (326)
T 2gjc_A 145 AALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL 224 (326)
T ss_dssp HHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred hHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence 23445566666666 499999999999998743 3 4 77777652 3457999
Q ss_pred ----CEEEEcccCccCh-hhhhccc-cc-cC----Cc----------EEeCCCCCC-CCCcEEEecccccccccccCcce
Q 013914 253 ----DIVVVGVGGRPLI-SLFKGQV-AE-NK----GG----------IETDDFFKT-SADDVYAVGDVATFPMKLYREMR 310 (434)
Q Consensus 253 ----D~vi~a~G~~p~~-~~~~~~~-~~-~~----g~----------i~vd~~~~t-~~~~iya~GD~~~~~~~~~~~~~ 310 (434)
+.||.|+|..... .++..-+ .. .. |- ..|+..-.. -+|++|++|-.+..... .+
T Consensus 225 ~~~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~- 300 (326)
T 2gjc_A 225 SQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDG---LN- 300 (326)
T ss_dssp STTCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHT---CC-
T ss_pred cccCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcC---CC-
Confidence 9999999966433 2221100 00 00 10 111122221 58999999987642211 00
Q ss_pred ec-ccHHHHHHHHHHHHHHHhcc
Q 013914 311 RV-EHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 311 ~~-~~~~~A~~~g~~aa~~i~~~ 332 (434)
++ +....-...|+.||+.|+..
T Consensus 301 r~g~~fg~m~~sg~~~a~~~~~~ 323 (326)
T 2gjc_A 301 RMGPTFGAMALSGVHAAEQILKH 323 (326)
T ss_dssp BCCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhhhhhhHHHHHHHHHH
Confidence 11 12222235788888877653
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=78.97 Aligned_cols=99 Identities=15% Similarity=0.298 Sum_probs=75.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-cC-----------------------Cc------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CM-----------------------PR------------------ 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~~-----------------------~~------------------ 201 (434)
-.|+|||+|..|+++|..+++.|.+|.++++.+. +. ..
T Consensus 22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~ 101 (641)
T 3cp8_A 22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR 101 (641)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence 4799999999999999999999999999987631 10 00
Q ss_pred -----------cCC-HHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 202 -----------LFT-ADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 202 -----------~~~-~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
..+ ..+.+.+.+.+++ .|++++.+ .|..+.. +++.+.+|.+.+|+++.+|.||+|+|..++
T Consensus 102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~-~V~~L~~-d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQD-TVIGVSA-NSGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEEC-CEEEEEE-ETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEee-EEEEEEe-cCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 011 1445566777777 49999654 7888876 356677788999999999999999997654
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.6e-06 Score=80.10 Aligned_cols=99 Identities=17% Similarity=0.293 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+...- + . + .. .+ .....+.+++
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~-~-~-----~----~~---~~--------~~~l~~~l~~ 203 (452)
T 2cdu_A 149 AKTITIIGSGYIGAELAEAYSNQNYN---VNLIDGHERVLY-K-Y-----F----DK---EF--------TDILAKDYEA 203 (452)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSTTT-T-T-----S----CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCE---EEEEEcCCchhh-h-h-----h----hh---hH--------HHHHHHHHHH
Confidence 46899999999999999999998876 999998754210 0 0 0 00 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.++.. +.+ ++.++.+|.+|+|+|.+|+..
T Consensus 204 ~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ 250 (452)
T 2cdu_A 204 HGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPNTE 250 (452)
T ss_dssp TTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEECCG
T ss_pred CCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCCHH
Confidence 89999999999999863332 333 677899999999999988753
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.3e-06 Score=80.62 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH-h
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY-K 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... +.. .. .+ .....+.+ +
T Consensus 174 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~---------d~---~~--------~~~l~~~l~~ 227 (468)
T 2qae_A 174 PKTMVVIGGGVIGLELGSVWARLGAE---VTVVEFAPRCA---PTL---------DE---DV--------TNALVGALAK 227 (468)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCE---EEEEecCCccc---ccC---------CH---HH--------HHHHHHHHhh
Confidence 46899999999999999999999876 99999985421 000 00 00 12345567 7
Q ss_pred hcCcEEEcCCeeEEEECCCC--EEEcc--CC--cEEEcceEEEecCCCcccc
Q 013914 84 EKGIELILSTEIVRADIASK--TLLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~--~v~~~--~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
+.|++++.++.+.+++.+.. .+.+. +| .++.+|.+++|+|.+|+..
T Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~ 279 (468)
T 2qae_A 228 NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279 (468)
T ss_dssp HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCT
T ss_pred cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCC
Confidence 88999999999999987653 34443 55 5799999999999988653
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=76.53 Aligned_cols=100 Identities=25% Similarity=0.353 Sum_probs=75.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 3568999999999999999999999999999987542100
Q ss_pred --c---C-----------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 202 --L---F-----------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 202 --~---~-----------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
. + ...+.+.+.+.+++ ++++++++|++++.++++ ..+++.+|+++.+|+||.|.
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~vV~Ad 177 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG--VTVWFTDGSSASGDLLIAAD 177 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE--EEEEETTSCEEEESEEEECC
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc--EEEEEcCCCEEeeCEEEECC
Confidence 0 0 01234445555544 889999999999874433 56888999999999999999
Q ss_pred cCccCh
Q 013914 260 GGRPLI 265 (434)
Q Consensus 260 G~~p~~ 265 (434)
|.....
T Consensus 178 G~~S~v 183 (407)
T 3rp8_A 178 GSHSAL 183 (407)
T ss_dssp CTTCSS
T ss_pred CcChHH
Confidence 976544
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-06 Score=82.02 Aligned_cols=99 Identities=17% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +.. .. .+ .....+.+++
T Consensus 177 ~~~vvViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 230 (470)
T 1dxl_A 177 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV---PTM---------DA---EI--------RKQFQRSLEK 230 (470)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEEcCCccc---ccc---------cH---HH--------HHHHHHHHHH
Confidence 46899999999999999999999876 99999985421 000 00 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEcc---CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSA---TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~---~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.+++.+.. .+.+. ++ .++.+|.+++|+|.+|+..
T Consensus 231 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~ 282 (470)
T 1dxl_A 231 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282 (470)
T ss_dssp SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCT
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCC
Confidence 8999999999999987653 33433 44 5799999999999988653
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-06 Score=83.35 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc-------CCc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC-------MPR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~-------~~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .+. .++.++.+...+.+++.||++++++.+..
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 197 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGR--- 197 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEecc---
Confidence 3578999999999999999999999999999998764 222 14677888888899999999999986521
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+.++++ .+++|.|++|+|..
T Consensus 198 -------~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 198 -------DASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp -------TBCHHHH-HSSCSEEEECCCCC
T ss_pred -------EEEhhHh-HhhCCEEEEecCCC
Confidence 1222222 35699999999975
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-05 Score=75.80 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----cC---C---HHHH-----------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----LF---T---ADIA----------------------- 208 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----~~---~---~~~~----------------------- 208 (434)
...+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+ .+ + ..+.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 104 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE 104 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence 3468999999999999999999999999999987643211 00 0 0000
Q ss_pred -----------------------HHHHHHHHh--cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 209 -----------------------AFYEGYYAN--KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 209 -----------------------~~~~~~l~~--~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
..+.+.|.+ .+++++++++|++++.++++ ..+++.+|+++.+|.||.|.|...
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vV~AdG~~S 182 (398)
T 2xdo_A 105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKK--WTLTFENKPSETADLVILANGGMS 182 (398)
T ss_dssp SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSS--EEEEETTSCCEEESEEEECSCTTC
T ss_pred CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCE--EEEEECCCcEEecCEEEECCCcch
Confidence 011222221 13578899999999874433 468889998899999999999755
Q ss_pred C
Q 013914 264 L 264 (434)
Q Consensus 264 ~ 264 (434)
.
T Consensus 183 ~ 183 (398)
T 2xdo_A 183 K 183 (398)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-06 Score=79.46 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=75.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..|++.|.+ |+++++.+... + .+... ....+.+.+++
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtli~~~~~~l---~----------------~~~~~----~~~~l~~~l~~ 244 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVK---TTLLHRGDLIL---R----------------NFDYD----LRQLLNDAMVA 244 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEECCCccc---c----------------ccCHH----HHHHHHHHHHH
Confidence 46899999999999999999998876 99999875421 0 00000 01234556677
Q ss_pred cCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+.. .+.+.+++++.+|.+|+|+|.+|+..
T Consensus 245 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~ 291 (484)
T 3o0h_A 245 KGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTT 291 (484)
T ss_dssp HTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCC
Confidence 8999999999999987654 46677888899999999999887654
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-06 Score=84.68 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=34.5
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
++++++++|++|+.++++ ..|++.+|+++.+|.||+|++.
T Consensus 248 ~~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~ad~vi~a~p~ 287 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSGSC--YSLELDNGVTLDADSVIVTAPH 287 (470)
T ss_dssp EEEECSCCEEEEEECSSS--EEEEESSSCEEEESEEEECSCH
T ss_pred CEEEeCCceEEEEEcCCe--EEEEECCCCEEECCEEEECCCH
Confidence 799999999999885444 5788899989999999999984
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=76.05 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=76.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------Cc----------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------PR---------------------------------- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------~~---------------------------------- 201 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... +.
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 479999999999999999999999999999875100 00
Q ss_pred -------------------cC-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE--eCCCc--EEECCEEEE
Q 013914 202 -------------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK--LKDGR--TLEADIVVV 257 (434)
Q Consensus 202 -------------------~~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~--~~~g~--~~~~D~vi~ 257 (434)
.+ ...+.+.+.+.+++.||+++.+++|+++.. +++.+.++. ..+|+ ++.+|.||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~-~~~~v~gv~~~~~dG~~~~i~ad~VI~ 166 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLF-EGERAVGVRYRNTEGVELMAHARFIVD 166 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEE-ETTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-ECCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence 00 124556777778889999999999999987 455554444 45674 799999999
Q ss_pred cccCccC
Q 013914 258 GVGGRPL 264 (434)
Q Consensus 258 a~G~~p~ 264 (434)
|+|....
T Consensus 167 AdG~~S~ 173 (512)
T 3e1t_A 167 ASGNRTR 173 (512)
T ss_dssp CCCTTCS
T ss_pred CCCcchH
Confidence 9997543
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.6e-05 Score=73.17 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+.+.+.+.+++.|++++.+++|+++..++++ ..+.+.+| ++.+|.||+|+|..
T Consensus 150 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~v~~~~g-~~~a~~vV~a~G~~ 203 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDG--VTIETADG-EYQAKKAIVCAGTW 203 (372)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCEEEEEECSSS--EEEEESSC-EEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCE--EEEEECCC-eEEcCEEEEcCCcc
Confidence 34455667778889999999999999874333 46777887 59999999999953
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.5e-06 Score=82.59 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=35.5
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
|+++++||+|||||++||+||..|++.|.+ |+|+|+++..
T Consensus 1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~ 40 (453)
T 2yg5_A 1 VPTLQRDVAIVGAGPSGLAAATALRKAGLS---VAVIEARDRV 40 (453)
T ss_dssp -CEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCCC
Confidence 666679999999999999999999999987 9999998764
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=77.93 Aligned_cols=99 Identities=23% Similarity=0.265 Sum_probs=76.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------------- 199 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------------------------------------------- 199 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999864220
Q ss_pred -------------------------Cc---cC-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc--EEEEEeCCC-
Q 013914 200 -------------------------PR---LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE--VKEVKLKDG- 247 (434)
Q Consensus 200 -------------------------~~---~~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~--v~~v~~~~g- 247 (434)
+. .+ ...+.+.+.+.+++.|+++++++++++++.++++. ...+++.++
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 00 00 12456677788888899999999999998744411 245666665
Q ss_pred --cEEECCEEEEcccCc
Q 013914 248 --RTLEADIVVVGVGGR 262 (434)
Q Consensus 248 --~~~~~D~vi~a~G~~ 262 (434)
.++.+|.||.|.|..
T Consensus 166 ~~~~i~a~~vV~AdG~~ 182 (535)
T 3ihg_A 166 GEYDLRAGYLVGADGNR 182 (535)
T ss_dssp EEEEEEEEEEEECCCTT
T ss_pred CeEEEEeCEEEECCCCc
Confidence 689999999999964
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=78.92 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+... +... . .+ .....+.+++
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~~l---~~~d---------~---~~--------~~~l~~~l~~ 227 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVI---VKVFGRSGSVA---NLQD---------E---EM--------KRYAEKTFNE 227 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCE---EEEECCTTCCT---TCCC---------H---HH--------HHHHHHHHHT
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEECCccc---ccCC---------H---HH--------HHHHHHHHhh
Confidence 46899999999999999999999876 99999986421 0000 0 00 1123344555
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc--CC--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG~~~~~~ 129 (434)
. ++++.++.+..+..+... +.+. +| .++.+|.+++|+|.+|+..
T Consensus 228 ~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~ 277 (492)
T 3ic9_A 228 E-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVD 277 (492)
T ss_dssp T-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCS
T ss_pred C-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCC
Confidence 5 999999999999765543 3433 56 6799999999999988654
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.1e-06 Score=81.26 Aligned_cols=101 Identities=13% Similarity=0.273 Sum_probs=69.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc---------cCC-HHHHHHHHHHH--HhcCcEEEcCCeEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------LFT-ADIAAFYEGYY--ANKGIKIIKGTVAVG 230 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---------~~~-~~~~~~~~~~l--~~~GV~~~~~~~v~~ 230 (434)
.++|+|||+|+.|+.+|..|.+.+.+|+++++.+.+.-. .++ .++...+.+.+ ++.+++++.+ ++++
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~-~v~~ 120 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEA-EATS 120 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEE-EEEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEE-EEEE
Confidence 358999999999999999999999999999998764211 011 11112233332 3457888765 5788
Q ss_pred EEecCCCcEEEEE------------------eCCCcEEECCEEEEcccCccChh
Q 013914 231 FTTNADGEVKEVK------------------LKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 231 i~~~~~g~v~~v~------------------~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
|+. +.+...+. ..++.++++|.+|+|+|.+|+..
T Consensus 121 ID~--~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~ 172 (502)
T 4g6h_A 121 INP--DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF 172 (502)
T ss_dssp EEG--GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred EEh--hhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence 876 33322332 13466899999999999988764
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-06 Score=85.77 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHH-----cCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAK-----QGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~-----~g~~~~~V~vie~~~~ 42 (434)
.+||+|||||++||++|..|++ .|.+ |+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~---v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCC---EEEEeCCCC
Confidence 5799999999999999999999 8987 999999764
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-06 Score=83.57 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|.. ++. .+++.+|+++.+|.||+++..
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~--~~~--~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGEKGKVTKVNA--NNK--TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESGGGCEEEEET--TTT--EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeecceEEEEEEc--cCC--EEEEcCCCEEECCEEEECCCH
Confidence 45667777778889999999999999987 332 467899999999999998874
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-05 Score=78.23 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC-------------------------------------Cc-----
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM-------------------------------------PR----- 201 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~-------------------------------------~~----- 201 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ..
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 479999999999999999999999999999753211 00
Q ss_pred --------------cC-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCC-cEEECCEEEEcccCcc
Q 013914 202 --------------LF-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDG-RTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 --------------~~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g-~~~~~D~vi~a~G~~p 263 (434)
.+ ...+.+.+.+.+++.|++++.+++|++++.++++ ..+++ .+| +++.+|+||.|.|...
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~--v~v~~~~~~G~~~~~a~~vV~ADG~~S 207 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA--VEVTVAGPSGPYPVRARYGVGCDGGRS 207 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC--EEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe--EEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence 00 1345677778888889999999999999875555 34555 788 6899999999999754
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.9e-06 Score=80.47 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++|++|..+. ++++..|.+ +|+++.||.||+|+|..|.
T Consensus 241 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 241 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 34788888899999999999999999998742 566667776 4778999999999997643
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.1e-05 Score=78.71 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=71.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCC-cc-C----------CHHHHHHHHHHH-HhcCcEEEcCCeE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP-RL-F----------TADIAAFYEGYY-ANKGIKIIKGTVA 228 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~-~~-~----------~~~~~~~~~~~l-~~~GV~~~~~~~v 228 (434)
.+++|||+|+.|+.+|..|++. |.+|+++++.+.+.. .. + ..++.....+.+ ++.|++++.++.+
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 5899999999999999999986 899999998765311 00 0 011111223444 4459999999999
Q ss_pred EEEEecCCCcEEEEEe-CCCc--EEECCEEEEcccCccChh
Q 013914 229 VGFTTNADGEVKEVKL-KDGR--TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~~-~~g~--~~~~D~vi~a~G~~p~~~ 266 (434)
..++. +.+...+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 117 ~~i~~--~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (480)
T 3cgb_A 117 TKVDT--EKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMP 155 (480)
T ss_dssp EEEET--TTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEC--CCCEEEEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence 99976 333334443 4576 799999999999877643
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=78.06 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+... + .. . .+ .....+.+++
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~-~~---------~---~~--------~~~l~~~l~~ 228 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSK---VTVLARNTLFF---R-ED---------P---AI--------GEAVTAAFRA 228 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T-SC---------H---HH--------HHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEEECCccC---C-CC---------H---HH--------HHHHHHHHHh
Confidence 46899999999999999999999876 99999875411 0 00 0 00 1234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCCcEEEcceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+.+++.+... +.+. +.++.+|.+|+|+|..|+.
T Consensus 229 ~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 229 EGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp TTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred CCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 89999999999999765543 4444 4579999999999998864
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.5e-05 Score=77.34 Aligned_cols=98 Identities=21% Similarity=0.188 Sum_probs=74.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+..|..+++.|.+ |+++++.+... +.+ .. .+ ...+.+.+++
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vt~v~~~~~~l---~~~---------~~---~~--------~~~l~~~l~~ 223 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVK---TTLIYRGKEIL---SRF---------DQ---DM--------RRGLHAAMEE 223 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---TTS---------CH---HH--------HHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCe---EEEEEcCCccc---ccc---------CH---HH--------HHHHHHHHHH
Confidence 46899999999999999999998876 99999875321 000 00 00 1234556778
Q ss_pred cCcEEEcCCeeEEEECCC-C--EEE-ccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS-K--TLL-SATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-~--~v~-~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+. . .+. +.+|+ +.+|.+|+|+|.+|+..
T Consensus 224 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~ 271 (463)
T 4dna_A 224 KGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTN 271 (463)
T ss_dssp TTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCT
T ss_pred CCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCC
Confidence 899999999999998753 2 567 77887 99999999999887654
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=76.39 Aligned_cols=99 Identities=13% Similarity=0.233 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~---Vtlv~~~~~~l---~----------------~~~~~----~~~~l~~~l~~ 233 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL---P----------------AVDEQ----VAKEAQKILTK 233 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---EEEEecCCCcC---c----------------ccCHH----HHHHHHHHHHh
Confidence 46899999999999999999999876 99999985421 0 00000 01234556778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCC---cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+... +.+.++ .++.+|.+++|+|.+|+..
T Consensus 234 ~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~ 283 (476)
T 3lad_A 234 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT 283 (476)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCT
T ss_pred CCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCC
Confidence 89999999999999866543 444443 5789999999999888653
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.8e-05 Score=69.13 Aligned_cols=166 Identities=14% Similarity=0.092 Sum_probs=101.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCc---------------------------------c----C
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPR---------------------------------L----F 203 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~---------------------------------~----~ 203 (434)
...++|||+|+.|+.+|..|++. |.+|+++++.+.+... + .
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 45899999999999999999997 9999999987543200 0 0
Q ss_pred CHHHHHHHHHHHHh-cCcEEEcCCeEEEEEecCC----------------C--cEEEEEeC--------------CCcEE
Q 013914 204 TADIAAFYEGYYAN-KGIKIIKGTVAVGFTTNAD----------------G--EVKEVKLK--------------DGRTL 250 (434)
Q Consensus 204 ~~~~~~~~~~~l~~-~GV~~~~~~~v~~i~~~~~----------------g--~v~~v~~~--------------~g~~~ 250 (434)
..++.+.+.+.+++ .|++++.++.+.++..+++ + ++.++... +..++
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i 238 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTI 238 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEE
Confidence 23445666666777 5999999999999876332 3 66666542 23479
Q ss_pred ECCEEEEcccCccCh-hhh-----hccccc-cCCcEEeC----------CCCCCCCCcEEEecccccccccccCcceecc
Q 013914 251 EADIVVVGVGGRPLI-SLF-----KGQVAE-NKGGIETD----------DFFKTSADDVYAVGDVATFPMKLYREMRRVE 313 (434)
Q Consensus 251 ~~D~vi~a~G~~p~~-~~~-----~~~~~~-~~g~i~vd----------~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~ 313 (434)
.++.||.|+|..... .++ ..++.. -.|.-..+ .+-+ -+|++|++|=.+.-.. |.++--+
T Consensus 239 ~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~-v~~gl~~~gm~~~~~~---g~~rmgp 314 (344)
T 3jsk_A 239 NAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTRE-IVPGLIVGGMELSEID---GANRMGP 314 (344)
T ss_dssp ECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEE-EETTEEECGGGHHHHH---TCEECCS
T ss_pred EcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCce-EcCCEEEechhhHhhc---CCCCCCc
Confidence 999999999976542 111 112211 11211111 1112 2799999996654211 1111112
Q ss_pred cHHHHHHHHHHHHHHHhcc
Q 013914 314 HVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 314 ~~~~A~~~g~~aa~~i~~~ 332 (434)
....=...|+.||+-|+..
T Consensus 315 ~fg~m~~sg~~~a~~~~~~ 333 (344)
T 3jsk_A 315 TFGAMALSGVKAAHEAIRV 333 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 2222235778888777654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.8e-06 Score=78.76 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
....+....+.++.+.+++++++|++|..+ ++.+ .|++.+|+ +.+|.||+|++.
T Consensus 203 ~g~~~l~~~l~~~l~~~v~~~~~V~~i~~~-~~~v-~v~~~~g~-~~ad~Vv~a~~~ 256 (424)
T 2b9w_A 203 DGTQAMFEHLNATLEHPAERNVDITRITRE-DGKV-HIHTTDWD-RESDVLVLTVPL 256 (424)
T ss_dssp TCHHHHHHHHHHHSSSCCBCSCCEEEEECC-TTCE-EEEESSCE-EEESEEEECSCH
T ss_pred ChHHHHHHHHHHhhcceEEcCCEEEEEEEE-CCEE-EEEECCCe-EEcCEEEECCCH
Confidence 334555555566667788999999999874 3344 48888884 899999999984
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=4e-06 Score=82.63 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVAP 44 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~~ 44 (434)
++.+||+|||||++||+||..|++.| .+ |+|+|+++..+
T Consensus 6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~---V~VlEa~~riG 45 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQD---CLVLEARDRVG 45 (516)
T ss_dssp CEEEEEEEECCBHHHHHHHHHHHHTTCCS---EEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcCCCC---EEEEeCCCCCC
Confidence 34689999999999999999999999 76 99999997643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.3e-06 Score=79.37 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=71.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc----CCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ----GVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~----g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
..+|+|||||+.|+-+|..|++. |.+ |+++++.+... .+ .++.. ......+
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~---V~~v~~~~~~~-~~--------------~l~~~-------~~~~~~~ 234 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM-GK--------------ILPEY-------LSNWTME 234 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT-TT--------------TSCHH-------HHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCE---EEEEecCcccc-cc--------------cCCHH-------HHHHHHH
Confidence 46899999999999999999873 444 99998764310 00 00000 0123345
Q ss_pred hHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCccc
Q 013914 81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTVLR 128 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~~~ 128 (434)
.+++.|++++.++.+.+++.+.. .+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 235 ~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~ 284 (493)
T 1m6i_A 235 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNV 284 (493)
T ss_dssp HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECC
T ss_pred HHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccH
Confidence 67778999999999999875443 4667788899999999999998864
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.3e-06 Score=77.43 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~~ 43 (434)
+++||+|||||++|++||..|++. |.+ |+|+|+++..
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~---v~v~E~~~~~ 43 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLDKR---VLVLERRPHI 43 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSCCC---EEEECSSSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCCCC---EEEEeCCCCC
Confidence 368999999999999999999998 886 9999999764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=78.77 Aligned_cols=98 Identities=16% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-+|..|++.|.+ |+++++....+. +... ......+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~d~~----~~~~l~~~l~~ 239 (483)
T 3dgh_A 187 PGKTLVVGAGYIGLECAGFLKGLGYE---PTVMVRSIVLRG--------------------FDQQ----MAELVAASMEE 239 (483)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCSSTT--------------------SCHH----HHHHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCCCcc--------------------cCHH----HHHHHHHHHHh
Confidence 46899999999999999999999876 999988532110 0000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCc-----EEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGL-----IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~-----~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..... .+.+.++. ++.+|.+++|+|.+|+..
T Consensus 240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~ 292 (483)
T 3dgh_A 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD 292 (483)
T ss_dssp TTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence 8999999999999876432 35554443 789999999999888653
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.2e-05 Score=74.21 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=70.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------CCH-HH------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------FTA-DI------ 207 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------~~~-~~------ 207 (434)
.++|||+|+.|+.+|..|++.|.+|+++++.+.+...+ ++- .+
T Consensus 6 DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (466)
T 3l8k_A 6 DVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKDY 85 (466)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHHh
Confidence 68999999999999999999999999999766432110 010 00
Q ss_pred ----H--HHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcE--EECCEEEEcccCccChh
Q 013914 208 ----A--AFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRT--LEADIVVVGVGGRPLIS 266 (434)
Q Consensus 208 ----~--~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~--~~~D~vi~a~G~~p~~~ 266 (434)
. ..+...+++.||+++.+ .+..++. + ...+.+.+|++ +.+|.+|+|+|.+|...
T Consensus 86 ~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~--~--~~~V~~~~g~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 86 VQELRFKQHKRNMSQYETLTFYKG-YVKIKDP--T--HVIVKTDEGKEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESE-EEEEEET--T--EEEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred heeccccchHHHHHHhCCCEEEEe-EEEEecC--C--eEEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence 1 33445566789999887 4666643 2 35677888888 99999999999877643
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=76.64 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+++++.+.... .+... ......+.+++
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l~-------------------~~d~~----~~~~l~~~l~~ 251 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAK---VTVVEFLDTILG-------------------GMDGE----VAKQLQRMLTK 251 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSSS-------------------SSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCE---EEEEeccccccc-------------------cCCHH----HHHHHHHHHHh
Confidence 46899999999999999999999876 999998754210 00000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccC---C--cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKT--LLSAT---G--LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~---~--~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..+... +.+.+ | .++.+|.+|+|+|.+|+..
T Consensus 252 ~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~ 303 (491)
T 3urh_A 252 QGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTD 303 (491)
T ss_dssp TTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCT
T ss_pred CCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCC
Confidence 89999999999998765543 44432 4 5799999999999988653
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.92 E-value=1.3e-05 Score=78.21 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-+|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~~l---~----------------~~d~~----~~~~~~~~l~~ 240 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL---R----------------SFDSM----ISTNCTEELEN 240 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCCe---EEEEEeCCccc---c----------------ccCHH----HHHHHHHHHHH
Confidence 46899999999999999999999876 99999875421 0 00000 01234566778
Q ss_pred cCcEEEcCCeeEEEECCCC----EEEccC---C----cEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASK----TLLSAT---G----LIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~----~v~~~~---~----~~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+.++..... .+.+.+ + .++.+|.+++|+|.+|+..
T Consensus 241 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~ 296 (478)
T 3dk9_A 241 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTK 296 (478)
T ss_dssp TTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCT
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCC
Confidence 8999999999999876432 244443 2 5789999999999888654
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.90 E-value=7.6e-05 Score=72.95 Aligned_cols=100 Identities=23% Similarity=0.388 Sum_probs=77.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR---------------------------------------- 201 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~---------------------------------------- 201 (434)
....|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 90 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD 90 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence 3468999999999999999999999999999875332100
Q ss_pred ------cC-------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEECCEEEEcccCcc
Q 013914 202 ------LF-------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRP 263 (434)
Q Consensus 202 ------~~-------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~---~~~~D~vi~a~G~~p 263 (434)
.. ...+.+.+.+.+++.|+++++++++++++.++++ ..+++.+++ ++.+|.||.|.|...
T Consensus 91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH--VVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC--EEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--EEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 00 1345667777788889999999999999885444 357777764 799999999999754
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.8e-05 Score=73.15 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe-EEEEccCCccCCcc---------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNID-VSMVYPEPWCMPRL--------------------------------------- 202 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~-v~lv~~~~~~~~~~--------------------------------------- 202 (434)
...|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 35899999999999999999999999 99999865431100
Q ss_pred ---------------------CCHHHHHHHHHHHHh-cC-cEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCE
Q 013914 203 ---------------------FTADIAAFYEGYYAN-KG-IKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADI 254 (434)
Q Consensus 203 ---------------------~~~~~~~~~~~~l~~-~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~ 254 (434)
....+.+.+.+.+++ .| ++++++++|+++.. +++ ..+++.+ | +++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~--v~v~~~~~~~g~~~~~~ad~ 160 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDG--RVLIGARDGHGKPQALGADV 160 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETT--EEEEEEEETTSCEEEEEESE
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCc--cEEEEecCCCCCceEEecCE
Confidence 001345566666665 36 68999999999987 455 3455554 7 5789999
Q ss_pred EEEcccCccCh
Q 013914 255 VVVGVGGRPLI 265 (434)
Q Consensus 255 vi~a~G~~p~~ 265 (434)
||.|.|.....
T Consensus 161 vV~AdG~~S~v 171 (410)
T 3c96_A 161 LVGADGIHSAV 171 (410)
T ss_dssp EEECCCTTCHH
T ss_pred EEECCCccchh
Confidence 99999976544
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.1e-05 Score=78.90 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=34.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+++.+||+|||||++||+||..|++.|.+ |+|+|+++..
T Consensus 8 ~~~~~~v~IIGaG~aGl~aA~~L~~~g~~---v~v~E~~~~~ 46 (489)
T 2jae_A 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYK---VTVLEARTRP 46 (489)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCC---EEEEeccCCC
Confidence 34568999999999999999999999886 9999999764
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=75.46 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
..+||+|||||++|+++|..|++.|.+ |+|+|+++..
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 64 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLASSGQR---VLIVDRRPHI 64 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCc---eEEEeccCCC
Confidence 468999999999999999999999887 9999998754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00014 Score=71.13 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=77.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------c-----------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------L----------------- 202 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------~----------------- 202 (434)
....|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 89 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID 89 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence 3468999999999999999999999999999876432100 0
Q ss_pred -------------C-CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc---EEECCEEEEcccCccC
Q 013914 203 -------------F-TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---TLEADIVVVGVGGRPL 264 (434)
Q Consensus 203 -------------~-~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~---~~~~D~vi~a~G~~p~ 264 (434)
+ ...+.+.+.+.+++.|+++++++++++++.++++ ..+++.+++ ++.+|.||.|.|....
T Consensus 90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~~~g~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG--VTVEVRGPEGKHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE--EEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--EEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence 0 1245667777788889999999999999874443 346676664 7999999999997543
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-05 Score=75.96 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=70.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++....+. +... ......+.+++
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~---Vtlv~~~~~l~~--------------------~d~~----~~~~l~~~l~~ 237 (488)
T 3dgz_A 185 PGKTLVVGASYVALECAGFLTGIGLD---TTVMMRSIPLRG--------------------FDQQ----MSSLVTEHMES 237 (488)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT--------------------SCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCc---eEEEEcCccccc--------------------CCHH----HHHHHHHHHHH
Confidence 46799999999999999999999876 999998632110 0000 01234566778
Q ss_pred cCcEEEcCCeeEEEECC-CC--EEEccC---Cc--EEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIA-SK--TLLSAT---GL--IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~-~~--~v~~~~---~~--~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+... .. .+.+.+ ++ ++.+|.+++|+|-+|+..
T Consensus 238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~ 290 (488)
T 3dgz_A 238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETR 290 (488)
T ss_dssp TTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCG
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccC
Confidence 89999999888888652 22 344433 44 478999999999888654
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.3e-05 Score=74.80 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC-CCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE-AVA 43 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~-~~~ 43 (434)
...+||+|||||++||+||..|++.|++ |+|+|++ +..
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~---V~VlE~~~~~v 80 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHD---VTILEANANRV 80 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCE---EEEECSCSSCC
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCc---EEEEecccccc
Confidence 3468999999999999999999999986 9999998 653
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.85 E-value=9.1e-06 Score=78.01 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++||+|||||++|+++|..|+++|++ |+|||+.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~---V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVD---VTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCE---EEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCe---EEEEcCCC
Confidence 47999999999999999999999987 99999986
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=76.76 Aligned_cols=99 Identities=19% Similarity=0.288 Sum_probs=70.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc---------C---CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL---------F---TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~---------~---~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.+++|||+|+.|+.+|..|.+. .+|+++++.+.+.... + ..++...+.+.+ +.++++++++.+.++
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i 186 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV 186 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence 4799999999999999999999 9999999877552110 1 123333333334 669999999999888
Q ss_pred EecCCCcEEEEEeCCCc--EEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~ 265 (434)
... +..+......+++ ++.+|.+|+|+|..|..
T Consensus 187 ~~~-~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~ 221 (493)
T 1y56_A 187 FDK-GEYFLVPVVRGDKLIEILAKRVVLATGAIDST 221 (493)
T ss_dssp EEC-SSSEEEEEEETTEEEEEEESCEEECCCEEECC
T ss_pred EcC-CcEEEEEEecCCeEEEEECCEEEECCCCCccC
Confidence 763 2333222334554 68999999999987754
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=1e-05 Score=78.75 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.|++++++++|++|..++++ ...|.+ ++.++.+|.||+|++.
T Consensus 234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA 288 (477)
T ss_dssp THHHHHHHHHHHHTTCEEECSCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence 357788888899999999999999999874333 245665 4558999999999984
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=1.7e-05 Score=77.23 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~~ 43 (434)
+++||+|||||++||++|..|++.| .+ |+|+|+++..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~---v~v~E~~~~~ 45 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKN---WHLYECNDTP 45 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCS---EEEEESSSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCC---EEEEeCCCCC
Confidence 4689999999999999999999998 45 9999999754
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.2e-05 Score=72.72 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEE---------EEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAV---------GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~---------~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+.+.+.+.+++.|++++.+++|+ ++..+ ++.+ .+.+.+| ++.+|.||+|+|...
T Consensus 174 l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 174 LALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp HHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccH
Confidence 55666777888999999999999 77652 3344 6667666 899999999999653
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.4e-05 Score=78.89 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-------C----CHHHHHHHHHHHHhc-CcEEEcCCeEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-------F----TADIAAFYEGYYANK-GIKIIKGTVAVGF 231 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-------~----~~~~~~~~~~~l~~~-GV~~~~~~~v~~i 231 (434)
.+++|||+|+.|+.+|..+.+.|.+|+++++.+.+.... + ..+....+.+.+.+. +|+++.++.|.++
T Consensus 129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~i 208 (965)
T 2gag_A 129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFGS 208 (965)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEee
Confidence 589999999999999999999999999999876542111 1 234445555566664 9999999999888
Q ss_pred EecCCCcEEEEEe---------------CCCcEEECCEEEEcccCccCh
Q 013914 232 TTNADGEVKEVKL---------------KDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 232 ~~~~~g~v~~v~~---------------~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.. ++.+..+.. .++.++.+|.+|+|||.+|..
T Consensus 209 ~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~ 255 (965)
T 2gag_A 209 YD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP 255 (965)
T ss_dssp ET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred ec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence 64 333222211 112368999999999987654
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.5e-06 Score=79.14 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccC--------Ccc-CCHHHHHHHHHHHHhcCcEEEcCCeEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCM--------PRL-FTADIAAFYEGYYANKGIKIIKGTVAVG 230 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~--------~~~-~~~~~~~~~~~~l~~~GV~~~~~~~v~~ 230 (434)
.+.+++|||+|+.|+.+|..|.+.| .+|+++++.+.+. +.. ...++...+.+.+++.||+++.++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~- 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG- 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT-
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe-
Confidence 3579999999999999999999988 9999999887654 211 123566777888889999999987652
Q ss_pred EEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 231 FTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 231 i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
. .+.+.+. ++.+|.||+|||..|
T Consensus 84 ------~---~V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 ------R---DVTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp ------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred ------e---EEEeccc-eEEcCEEEEecCcCC
Confidence 1 1233332 468999999999875
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=85.65 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccC-------Cc-cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEe
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCM-------PR-LFTADIAAFYEGYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~-------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.++|+|||+|+.|+.+|..|++.|. +|+++++.+.+. +. .++.+..+...+.+++.||+++.++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 4689999999999999999999999 799999876542 11 13566777777889999999999987631
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccC-ccCh
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGG-RPLI 265 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~-~p~~ 265 (434)
. .+++++++++.+|.||+|||. +|..
T Consensus 264 ---~---~v~~~~~~~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 ---N---EITLNTLKEEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp ---T---SBCHHHHHHTTCCEEEECCCCCEECC
T ss_pred ---c---eEEhhhcCccCCCEEEEecCCCCCCC
Confidence 1 133444445779999999997 5653
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.8e-05 Score=76.99 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG--VKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~~~~V~vie~~~~~ 43 (434)
++||+|||||++|+++|++|++.| .+ |+|+|+++..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~---v~v~E~~~~~ 41 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLN---ITLLEAGERL 41 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSE---EEEECSSSSS
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCC---EEEEECCCCC
Confidence 689999999999999999999998 55 9999998653
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=77.53 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+.+||+|||||++||+||..|++.|++ |+|+|+++..
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~---v~v~E~~~~~ 48 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKA 48 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEeCCCC
Confidence 358999999999999999999999886 9999999764
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.7e-05 Score=73.77 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||+|+.|+-.|..|++.|.+ |+++++....+. +... ......+.+++
T Consensus 210 ~~~vvVIGgG~ig~E~A~~l~~~G~~---Vtlv~~~~~l~~--------------------~d~~----~~~~~~~~l~~ 262 (519)
T 3qfa_A 210 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLRG--------------------FDQD----MANKIGEHMEE 262 (519)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT--------------------SCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCe---EEEEeccccccc--------------------CCHH----HHHHHHHHHHH
Confidence 45799999999999999999999876 999998522110 0000 01234456778
Q ss_pred cCcEEEcCCeeEEEECCC----C--EEE--ccCC-c--EEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIAS----K--TLL--SATG-L--IFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~--~v~--~~~~-~--~~~~d~lvlAtG~~~~~~ 129 (434)
.|++++.++.+..+.... . .+. ..++ + ++.+|.+++|+|-+|+..
T Consensus 263 ~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~ 318 (519)
T 3qfa_A 263 HGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTR 318 (519)
T ss_dssp TTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCS
T ss_pred CCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCC
Confidence 899999987666664321 2 222 2344 2 568999999999988654
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00028 Score=69.00 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCcc
Q 013914 207 IAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRP 263 (434)
Q Consensus 207 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~p 263 (434)
+...+.+.+++.|++++.+++|+++..+ +.+..+++ .+|+ ++.+|.||.|+|...
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRE--NGLWIVEAEDIDTGKKYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEE--TTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence 4556667778899999999999999873 35567776 3575 789999999999653
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4e-05 Score=73.51 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++|++|.. +++++..+. .+|+++.||.||+|+|..+.
T Consensus 233 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~-~~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIM-ENGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp TTHHHHHHHHHHHHHTCCCBCSCCCCEEEE-ETTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHHcCCEEECCCEEEEEEE-eCCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 357788888889999999999999999987 356665565 47788999999999997753
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-05 Score=78.37 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC---CCc--EEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK---DGR--TLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~---~g~--~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++.. +++.+.+|.+. +|+ ++.+|.||+|+|.-
T Consensus 187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~-~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~w 249 (571)
T 2rgh_A 187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLY-EGDQIVGVKARDLLTDEVIEIKAKLVINTSGPW 249 (571)
T ss_dssp HHHHHHHHHHHHHHTTCEEESSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEBSCEEECCGGG
T ss_pred hHHHHHHHHHHHHHcCCeEEeccEEEEEEE-eCCEEEEEEEEEcCCCCEEEEEcCEEEECCChh
Confidence 456677777888899999999999999987 34566667653 343 68999999999953
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.67 E-value=6.8e-05 Score=76.44 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCcEEEEC--CCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG--~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
..+|+||| +|..|+.+|..|++.|.+ |+++++.+...-. .. ... ....+.+.+
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~---Vtlv~~~~~l~~~-------~~----~~~-----------~~~~l~~~l 577 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYE---VSIVTPGAQVSSW-------TN----NTF-----------EVNRIQRRL 577 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCE---EEEEESSSSTTGG-------GG----GGT-----------CHHHHHHHH
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCe---eEEEecccccccc-------cc----cch-----------hHHHHHHHH
Confidence 35799999 999999999999999876 9999987542100 00 000 012345667
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEc---cCCcEEEcceEEEecCCCcc
Q 013914 83 KEKGIELILSTEIVRADIASKTLLS---ATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~---~~~~~~~~d~lvlAtG~~~~ 127 (434)
++.|++++.++.+.+++.+...+.. .++.++.+|.+|+|+|.+|+
T Consensus 578 ~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 578 IENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp HHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred HHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 7889999999999999876555542 24457999999999998875
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=8.6e-06 Score=78.64 Aligned_cols=89 Identities=18% Similarity=0.153 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHh-C------CCeEEEEccCCccCC--------c-cCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKI-N------NIDVSMVYPEPWCMP--------R-LFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~-~------g~~v~lv~~~~~~~~--------~-~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
+++++|||+|+.|+.+|..|.+ . |.+|+++++.+.+.. . ....++...+.+.+++.||+++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 5689999999999999999999 7 999999998866532 1 1234566777788888999999885
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
.+ +. .+.++++ ++.+|.||+|+|..
T Consensus 83 ~v-------~~---~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 83 VV-------GE---HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CB-------TT---TBCHHHH-HHHSSEEEECCCCC
T ss_pred EE-------CC---EEEECCC-eEeCCEEEEeeCCC
Confidence 43 11 1344444 47899999999986
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=3.4e-05 Score=75.12 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
..+||+|||||++||+||..|++.|.+ |+|+|+++..
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~---v~v~E~~~~~ 51 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTD---AVLLESSARL 51 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCC---EEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCC---EEEEEcCCCC
Confidence 368999999999999999999999987 9999999763
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=4.5e-05 Score=70.48 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||+|||||+||+.||..|++.|.+ |+|+|+++.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~---V~liE~~~~ 35 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVP---VRLFEMRPK 35 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---EEEECCTTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCc---EEEEeccCC
Confidence 6999999999999999999999987 999999763
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.2e-05 Score=72.94 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~ 43 (434)
+||+|||||++|+++|..|++. |.+ |+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~---V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWA---IDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSE---EEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCC---EEEEECCCCC
Confidence 3899999999999999999999 876 9999998653
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00029 Score=68.31 Aligned_cols=98 Identities=21% Similarity=0.293 Sum_probs=70.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------------c------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP-------------R------------------------------ 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~-------------~------------------------------ 201 (434)
.|+|||+|..|+.+|..+++.|.+|+++++...-.. .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 379999999999999999999999999987610000 0
Q ss_pred -----------------------------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC-
Q 013914 202 -----------------------------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK- 245 (434)
Q Consensus 202 -----------------------------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~- 245 (434)
.....+.+.+.+.+++.||+++.++.+ ++.. +++++.++...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~-~~~~v~Gv~v~~ 158 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRV-KDGKVTGFVTEK 158 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEE-ETTEEEEEEETT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEE-eCCEEEEEEEEe
Confidence 001134455666667789999999999 9876 35666666553
Q ss_pred CCcEEECCEEEEcccCccC
Q 013914 246 DGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 246 ~g~~~~~D~vi~a~G~~p~ 264 (434)
++.++.+|.||+|+|..+.
T Consensus 159 ~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 159 RGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp TEEECCCSEEEECCCCCGG
T ss_pred CCCeEEeeeEEECCCCCcc
Confidence 2235789999999996553
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=3.8e-05 Score=72.38 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
++||+|||||++|+++|..|++.|.+ |+|+|+++..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~ 38 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHI 38 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCc---EEEEEecCCc
Confidence 57999999999999999999998876 9999998764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=7.8e-05 Score=75.77 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=66.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----cCC-----HHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----LFT-----ADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----~~~-----~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.++++|||+|+.|+.+|..|++.|.+|+++++.+.+... .++ .+..+.+.+.+++.||++++++.+...
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~- 451 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD- 451 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecHH-
Confidence 468999999999999999999999999999987654211 011 234556677788899999998764320
Q ss_pred ecCCCcEEEEEeCCCcEE-ECCEEEEcccCccChh
Q 013914 233 TNADGEVKEVKLKDGRTL-EADIVVVGVGGRPLIS 266 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~-~~D~vi~a~G~~p~~~ 266 (434)
.+ .+|.+|+|||.+|...
T Consensus 452 ----------------~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 452 ----------------QLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ----------------SSCCSSEEEECCCEEECCC
T ss_pred ----------------HhhcCCEEEEccCCCcCCC
Confidence 13 7999999999887654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.9e-05 Score=72.31 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC------CCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQG------VKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g------~~~~~V~vie~~~~ 42 (434)
+||+|||||++|+++|++|+++| .+ |+|+|++..
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~---V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD---IKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE---EEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCce---EEEEECCCC
Confidence 38999999999999999999987 55 999999863
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00013 Score=73.17 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||..|+-+|..|++.|.+ |+++++....+. + ...+ .....+.+++
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~~---Vtlv~~~~~l~~----~---------d~~~-----------~~~~~~~l~~ 338 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGGD---VTVMVRSILLRG----F---------DQQM-----------AEKVGDYMEN 338 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCSSTT----S---------CHHH-----------HHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCE---EEEEECCcCcCc----C---------CHHH-----------HHHHHHHHHh
Confidence 35899999999999999999999876 999998621110 0 0000 1123456677
Q ss_pred cCcEEEcCCeeEEEEC------CC---CEE--E--ccCCcEEE--cceEEEecCCCccc
Q 013914 85 KGIELILSTEIVRADI------AS---KTL--L--SATGLIFK--YQILVIATGSTVLR 128 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~------~~---~~v--~--~~~~~~~~--~d~lvlAtG~~~~~ 128 (434)
.|++++.++.+..+.. +. ..+ . ..+|+++. +|.+++|+|.+|+.
T Consensus 339 ~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~ 397 (598)
T 2x8g_A 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQL 397 (598)
T ss_dssp TTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECG
T ss_pred CCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcccc
Confidence 8999999877766632 11 222 2 24665554 99999999998865
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=4.5e-05 Score=74.69 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
..+||+|||||++||++|..|++.|.+ |+|+|+++..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~---v~vlE~~~~~ 68 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASERP 68 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCe---EEEEECCCCC
Confidence 468999999999999999999999986 9999998753
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.60 E-value=4.3e-05 Score=71.58 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+||+|||||++|+++|..|++.|.+ |+|+|+++..
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~---v~v~E~~~~~ 36 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHI 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCc---EEEEecCCCC
Confidence 6999999999999999999999887 9999998653
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.59 E-value=4.4e-05 Score=74.70 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcC-cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKG-IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+.+.+.+++.| ++++++++|++|...+++ ..|++.+|+++.+|.||+|+|.
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~ 310 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDA--ARVTARDGREFVAKRVVCTIPL 310 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSS--EEEEETTCCEEEEEEEEECCCG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCE--EEEEECCCCEEEcCEEEECCCH
Confidence 467788888888888 999999999999874433 4688888988999999999994
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00089 Score=66.86 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=71.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCC-------------------------------ccC-------
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMP-------------------------------RLF------- 203 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~-------------------------------~~~------- 203 (434)
-.|+|||+|..|+-+|..|++.| .+|+++++.+.... ...
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~ 85 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY 85 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 37999999999999999999999 99999987532100 000
Q ss_pred -----------------------------------------------CHHHHHHHHHHHHhcC-cEEEcCCeEEEEEecC
Q 013914 204 -----------------------------------------------TADIAAFYEGYYANKG-IKIIKGTVAVGFTTNA 235 (434)
Q Consensus 204 -----------------------------------------------~~~~~~~~~~~l~~~G-V~~~~~~~v~~i~~~~ 235 (434)
...+...+.+.+++.| |+++.++.+.++.. +
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~-~ 164 (602)
T 1kf6_A 86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV-D 164 (602)
T ss_dssp HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-e
Confidence 0133444555566678 99999999999986 3
Q ss_pred CCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 236 DGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 236 ~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
++++.++.. .+|+ .+.++.||+|+|.
T Consensus 165 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 165 DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 566666543 5676 6899999999994
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00012 Score=73.80 Aligned_cols=35 Identities=43% Similarity=0.582 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHH---H-cCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFA---K-QGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~---~-~g~~~~~V~vie~~~~ 42 (434)
.+||||||||+||++||..|+ + .|.+ |+||||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~---V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCe---EEEEeCcCC
Confidence 489999999999999999999 5 7877 999999864
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00095 Score=67.30 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=73.4
Q ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccCC------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMP------------------------------------------ 200 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~-~g~~v~lv~~~~~~~~------------------------------------------ 200 (434)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 379999999999999999999 9999999987532100
Q ss_pred --c---------------------cCC-HHHHHHHHHHHHhcCc--EEEcCCeEEEEEecCC--CcEEEEEeC------C
Q 013914 201 --R---------------------LFT-ADIAAFYEGYYANKGI--KIIKGTVAVGFTTNAD--GEVKEVKLK------D 246 (434)
Q Consensus 201 --~---------------------~~~-~~~~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~--g~v~~v~~~------~ 246 (434)
. .++ ..+.+.+.+.+++.|+ ++++++++++++.+++ +....+++. +
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 001 2456677788888877 9999999999987442 222345543 4
Q ss_pred C--cEEECCEEEEcccCc
Q 013914 247 G--RTLEADIVVVGVGGR 262 (434)
Q Consensus 247 g--~~~~~D~vi~a~G~~ 262 (434)
| +++.+|.||.|.|..
T Consensus 193 G~~~~i~a~~vVgADG~~ 210 (639)
T 2dkh_A 193 GQIETVQARYVVGCDGAR 210 (639)
T ss_dssp TCEEEEEEEEEEECCCTT
T ss_pred CCeEEEEeCEEEECCCcc
Confidence 6 478999999999954
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=70.03 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhc--------CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 206 DIAAFYEGYYANK--------GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 206 ~~~~~~~~~l~~~--------GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.+.+.+.+.+.+. |++++++++|++|...+++ ..|++.+|+++.+|.||+|++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~--v~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCH
T ss_pred HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCc--EEEEECCCCEEEcCEEEEecCH
Confidence 3445555544443 6889999999999884444 4588899989999999999883
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00012 Score=68.85 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=67.4
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCcc----------------------C-Cc------------------
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWC----------------------M-PR------------------ 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~----------------------~-~~------------------ 201 (434)
+|+|||+|+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 689999999999999999999 9999999986543 0 00
Q ss_pred -------------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 202 -------------LFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 202 -------------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
....++.+.+.+.+++.|++++++++|++++. . +++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~-----------~~~~ad~vV~AdG~~S 143 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L-----------PLADYDLVVLANGVNH 143 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C-----------CGGGCSEEEECCGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c-----------ccccCCEEEECCCCCc
Confidence 01145677888888888999999999888753 1 1257999999999654
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=65.06 Aligned_cols=95 Identities=17% Similarity=0.274 Sum_probs=68.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC-------------------------------------------
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP------------------------------------------- 200 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~------------------------------------------- 200 (434)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 3799999999999999999999999999987643210
Q ss_pred -c-----c--------------------CC-HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--c
Q 013914 201 -R-----L--------------------FT-ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--R 248 (434)
Q Consensus 201 -~-----~--------------------~~-~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~ 248 (434)
. . ++ ..+.+.+.+.+++. +++++++++++.++++ ..+++.+ | .
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~--v~v~~~~~~~G~~~ 181 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDH--VRATITDLRTGATR 181 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSC--EEEEEEETTTCCEE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCE--EEEEEEECCCCCEE
Confidence 0 0 00 13444555555555 8899999999875444 3355544 6 4
Q ss_pred EEECCEEEEcccCcc
Q 013914 249 TLEADIVVVGVGGRP 263 (434)
Q Consensus 249 ~~~~D~vi~a~G~~p 263 (434)
++.+|.||.|.|...
T Consensus 182 ~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 182 AVHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEEECCCTTC
T ss_pred EEEeCEEEECCCCCc
Confidence 789999999999643
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0049 Score=61.13 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
...|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4689999999999999999999999999998764
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00095 Score=65.77 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 479999999999999999999 999999988754
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00024 Score=72.87 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.1
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.|++++++++|++|+.++++ ..|++.+|+++.+|.||+|++
T Consensus 542 ~gl~I~l~t~V~~I~~~~~~--v~V~~~~G~~i~Ad~VIvA~P 582 (776)
T 4gut_A 542 EGLDIQLKSPVQCIDYSGDE--VQVTTTDGTGYSAQKVLVTVP 582 (776)
T ss_dssp TTSCEESSCCEEEEECSSSS--EEEEETTCCEEEESEEEECCC
T ss_pred hCCcEEcCCeeEEEEEcCCE--EEEEECCCcEEEcCEEEECCC
Confidence 37899999999999974444 468889998999999999996
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00038 Score=71.28 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=68.7
Q ss_pred CCcEEEEC--CCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 5 SFKYVILG--GGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 5 ~~dvvIIG--~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
..+|+||| ||..|+-+|..|++.|.+ |+++++.+ .. ....... . .....+.+
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~---Vtlv~~~~-l~-------~~~~~~~---~------------~~~~~~~l 581 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVH-LA-------NYMHFTL---E------------YPNMMRRL 581 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSC-TT-------HHHHHTT---C------------HHHHHHHH
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCE---EEEEeccc-cc-------ccccccc---c------------HHHHHHHH
Confidence 36899999 999999999999999875 99999875 21 0000000 0 01234566
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEc--cCC-cE------------------EEcceEEEecCCCccc
Q 013914 83 KEKGIELILSTEIVRADIASKTLLS--ATG-LI------------------FKYQILVIATGSTVLR 128 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~--~~~-~~------------------~~~d~lvlAtG~~~~~ 128 (434)
++.||+++.++.+.+++.+...+.. .++ +. +.+|.+|+|+|..|..
T Consensus 582 ~~~GV~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 582 HELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp HHTTCEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred HhCCCEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCCh
Confidence 7889999999999999865333332 222 22 8999999999988753
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00028 Score=69.81 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=42.7
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EE---ECCEEEEcccCccChhhh
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TL---EADIVVVGVGGRPLISLF 268 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~--~~---~~D~vi~a~G~~p~~~~~ 268 (434)
++....++.+++++.++.|+++.. +++++.+|++.+ |+ ++ .++.||+|+|.-....++
T Consensus 201 ~l~~~~~~~~~~i~~~~~V~~i~~-~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL 266 (546)
T 1kdg_A 201 YLQTALARPNFTFKTNVMVSNVVR-NGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRIL 266 (546)
T ss_dssp HHHHHHTCTTEEEECSCCEEEEEE-ETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHH
T ss_pred HHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHH
Confidence 444444456999999999999987 356788888865 63 34 789999999975444444
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00015 Score=71.39 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..||+||||+|.||+.+|.+|++ +.+ |+|+|+...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g~~---VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-KYK---VLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-TSC---EEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-CCc---EEEEecCCC
Confidence 35899999999999999999999 876 999999854
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00034 Score=70.86 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+.+||+|||+|++|+++|..|++.|++ |+|+|+.+..
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCe---EEEEecCCCC
Confidence 358999999999999999999999987 9999998653
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0004 Score=71.76 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|+|||+|++||++|..|++.|++ |+|+|+.+..
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~---v~v~E~~~~~ 313 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRV 313 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCcC
Confidence 57999999999999999999999987 9999998764
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0036 Score=62.57 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=37.6
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+++.||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|-
T Consensus 161 L~~~~~~~gv~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG 215 (621)
T 2h88_A 161 LYGRSLRYDTSYFVEYFALDLLM-ENGECRGVIALCIEDGTIHRFRAKNTVIATGG 215 (621)
T ss_dssp HHHHHTTSCCEEEETEEEEEEEE-ETTEEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHhCCCEEEEceEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 33344567899999999999876 3677777665 4675 6889999999994
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00037 Score=68.63 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=37.1
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEcccCccChhhh
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G~~p~~~~~ 268 (434)
.+.++.+..++.+.++.. +++++.++...+. .++.++.||+|.|.--...+|
T Consensus 222 ~r~nl~v~~~~~v~~i~~-~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LL 276 (526)
T 3t37_A 222 GRKNLTILTGSRVRRLKL-EGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALL 276 (526)
T ss_dssp TCTTEEEECSCEEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHH
T ss_pred CCCCeEEEeCCEEEEEEe-cCCeEEEEEEEecCceEEEeecceEEcccccCCcchh
Confidence 456799999999999987 4566666665432 356789999999954434443
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00041 Score=68.71 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+.||+||||||.||+.+|.+|++.+ .+ |+|||+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~---VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAENPNVT---VLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTSTTSC---EEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCCc---EEEEecCCC
Confidence 4699999999999999999999976 34 999999864
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0058 Score=62.64 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.+|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 58999999999999999999999999999986544
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00039 Score=70.02 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC--------CCCCcEEEEeCCC-CC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG--------VKPGELAIISKEA-VA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--------~~~~~V~vie~~~-~~ 43 (434)
.++|+|||||++||+||..|.+.| ++ |+|+|+++ ..
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~---V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGID---VQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEE---EEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCce---EEEEeccCccc
Confidence 478999999999999999999987 54 99999987 53
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0073 Score=60.78 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
+.+.+++.||+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|+|-
T Consensus 164 L~~~a~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG 218 (660)
T 2bs2_A 164 VANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGG 218 (660)
T ss_dssp HHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred HHHHHHhCCCEEEECcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCc
Confidence 34455667899999999999976 4577766654 5675 4899999999994
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.006 Score=58.83 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC------CeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINN------IDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g------~~v~lv~~~~~~ 198 (434)
.+|+|||+|.+|+-+|..|.+.| .+|+++++.+++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 58999999999999999999999 999999987654
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00064 Score=67.11 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc--EEECC-EEEEcccCc
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR--TLEAD-IVVVGVGGR 262 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~--~~~~D-~vi~a~G~~ 262 (434)
++....++.|++++.++.|++|..++++++.+|++.+ |+ ++.++ .||+|+|.-
T Consensus 214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~ 272 (546)
T 2jbv_A 214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAI 272 (546)
T ss_dssp HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHH
T ss_pred HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCcc
Confidence 3333344679999999999999884337788887744 53 67898 899999963
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00088 Score=66.72 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHhcCcEEEcCCeEEEEEecCC---CcEEEEEeC--CCc--EEEC-CEEEEcccCccChhhh
Q 013914 211 YEGYYANKGIKIIKGTVAVGFTTNAD---GEVKEVKLK--DGR--TLEA-DIVVVGVGGRPLISLF 268 (434)
Q Consensus 211 ~~~~l~~~GV~~~~~~~v~~i~~~~~---g~v~~v~~~--~g~--~~~~-D~vi~a~G~~p~~~~~ 268 (434)
+....++.+++++.++.|+++..+++ +++.+|+.. +|+ ++.+ +.||+|+|.-....++
T Consensus 237 l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL 302 (587)
T 1gpe_A 237 LLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLIL 302 (587)
T ss_dssp TTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred HHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHH
Confidence 33344567999999999999976432 477787764 564 4667 8899999965444444
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00096 Score=65.25 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+|++|||+|++|+.+|..|++.+.+ |+|||+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEECCCC
Confidence 468999999999999999999998877 999999864
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0057 Score=59.65 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=71.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCccC-------Cc----------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINN--------------IDVSMVYPEPWCM-------PR---------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g--------------~~v~lv~~~~~~~-------~~---------------------- 201 (434)
.++|||+|++|+-+|..|.+.| ....++++.+.+. +.
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 4899999999999999887642 3455666544211 00
Q ss_pred -------------------c--CCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC------cEEEEEeCCC-----cE
Q 013914 202 -------------------L--FTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG------EVKEVKLKDG-----RT 249 (434)
Q Consensus 202 -------------------~--~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g------~v~~v~~~~g-----~~ 249 (434)
. ...++.++++...++.+..++++++|++++..+++ ....|++.++ ++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~ 200 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISA 200 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEE
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEE
Confidence 0 01356778888888888889999999999863332 2356666543 36
Q ss_pred EECCEEEEcccCccChh
Q 013914 250 LEADIVVVGVGGRPLIS 266 (434)
Q Consensus 250 ~~~D~vi~a~G~~p~~~ 266 (434)
+.|+.||+|+|..|+..
T Consensus 201 ~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 201 RRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp EEEEEEEECCCCEECCC
T ss_pred EEeCEEEECcCCCCCCC
Confidence 88999999999887654
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00074 Score=66.89 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCcEEEcCCeEEEEEecC---CCcEEEEEeC--CCc--EEECC-EEEEcccCccChhh
Q 013914 209 AFYEGYYANKGIKIIKGTVAVGFTTNA---DGEVKEVKLK--DGR--TLEAD-IVVVGVGGRPLISL 267 (434)
Q Consensus 209 ~~~~~~l~~~GV~~~~~~~v~~i~~~~---~g~v~~v~~~--~g~--~~~~D-~vi~a~G~~p~~~~ 267 (434)
.++...+++.++++++++.|++|..++ ++++.+|++. +|+ ++.+. -||+|+|.--...+
T Consensus 231 ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqL 297 (583)
T 3qvp_A 231 EWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTI 297 (583)
T ss_dssp HHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHH
T ss_pred HHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHH
Confidence 344445567899999999999998743 5678888874 564 46676 59999995433333
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00096 Score=65.22 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+|++|||+|++|+.+|..|++.|.+ |+|||+...
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~---v~~~e~~~~ 39 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL 39 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc---EEEEeCCCC
Confidence 468999999999999999999998877 999999864
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0034 Score=60.30 Aligned_cols=100 Identities=16% Similarity=0.299 Sum_probs=61.4
Q ss_pred CCeEEecCHHHHHHHHHHHHh--CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 140 KNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~--~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
..++...+.++..++.+.+.. ...++++|+|||.+|..+|..|.+ ..+|+++++ +++-++.+.+.|.
T Consensus 210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~---------d~~r~~~la~~l~- 278 (461)
T 4g65_A 210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIER---------NLQRAEKLSEELE- 278 (461)
T ss_dssp CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEES---------CHHHHHHHHHHCT-
T ss_pred CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEec---------CHHHHHHHHHHCC-
Confidence 446655555666666655532 256899999999999999999854 588999974 5555666655543
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+..+ |+.-..+-.+.| .-++|.++.+|+..
T Consensus 279 -~~~Vi~G----------D~td~~~L~ee~-i~~~D~~ia~T~~D 311 (461)
T 4g65_A 279 -NTIVFCG----------DAADQELLTEEN-IDQVDVFIALTNED 311 (461)
T ss_dssp -TSEEEES----------CTTCHHHHHHTT-GGGCSEEEECCSCH
T ss_pred -CceEEec----------cccchhhHhhcC-chhhcEEEEcccCc
Confidence 2222222 210000101111 34699999999964
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.013 Score=59.02 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=36.4
Q ss_pred HHHHhc-Cc-EEEcCCeEEEEEecCC--CcEEEEEe---CCCc--EEECCEEEEcccC
Q 013914 213 GYYANK-GI-KIIKGTVAVGFTTNAD--GEVKEVKL---KDGR--TLEADIVVVGVGG 261 (434)
Q Consensus 213 ~~l~~~-GV-~~~~~~~v~~i~~~~~--g~v~~v~~---~~g~--~~~~D~vi~a~G~ 261 (434)
+.+++. || +++.++.+.++..+++ +++.++.. .+|+ .+.++.||+|+|-
T Consensus 159 ~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG 216 (643)
T 1jnr_A 159 EAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGG 216 (643)
T ss_dssp HHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred HHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCc
Confidence 344455 89 9999999999987433 27777653 5665 6889999999993
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.011 Score=59.72 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHh-----CCCeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKI-----NNIDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~-----~g~~v~lv~~~ 195 (434)
.|+|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 10 dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~ 45 (665)
T 1pn0_A 10 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 45 (665)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence 69999999999999999999 99999999875
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00098 Score=65.83 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEec---CC-CcEEEEEeCC--C-c--EEEC-CEEEEcccCc
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTN---AD-GEVKEVKLKD--G-R--TLEA-DIVVVGVGGR 262 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~---~~-g~v~~v~~~~--g-~--~~~~-D~vi~a~G~~ 262 (434)
..++...+++.++++++++.|++|..+ ++ +++.+|++.+ | + ++.+ .-||+|.|.-
T Consensus 211 ~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai 275 (566)
T 3fim_B 211 TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSV 275 (566)
T ss_dssp HHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHH
T ss_pred HHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCc
Confidence 345555557789999999999999874 12 5677787643 4 3 4667 6699999943
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.005 Score=59.14 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=78.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|.|||.|.+|+++|..|+++|++ |++.|.+... .....+.++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~---V~~~D~~~~~-------------------------------~~~~~~~L~ 53 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAI---VTVNDGKPFD-------------------------------ENPTAQSLL 53 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCE---EEEEESSCGG-------------------------------GCHHHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCE---EEEEeCCccc-------------------------------CChHHHHHH
Confidence 357899999999999999999999987 9999986420 001234566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.|+++..+... +. + . ++ .+|.+|+++|..+..|.. ......++-.+...+-+. . +. +.
T Consensus 54 ~~gi~~~~g~~~-----~~--~-~-~~---~~d~vv~spgi~~~~p~~---~~a~~~gi~v~~~~e~~~---~-~~--~~ 112 (451)
T 3lk7_A 54 EEGIKVVCGSHP-----LE--L-L-DE---DFCYMIKNPGIPYNNPMV---KKALEKQIPVLTEVELAY---L-VS--ES 112 (451)
T ss_dssp HTTCEEEESCCC-----GG--G-G-GS---CEEEEEECTTSCTTSHHH---HHHHHTTCCEECHHHHHH---H-HC--CS
T ss_pred hCCCEEEECCCh-----HH--h-h-cC---CCCEEEECCcCCCCChhH---HHHHHCCCcEEeHHHHHH---H-hc--CC
Confidence 779988876431 10 0 0 10 178999999987755541 111112221222222111 1 11 23
Q ss_pred CcEEEECCC---HHHHHHHHHHHhCCCeEEE
Q 013914 164 GKAVVVGGG---YIGLELSAALKINNIDVSM 191 (434)
Q Consensus 164 ~~v~ViG~g---~~~~e~a~~l~~~g~~v~l 191 (434)
+.+.|-|+. -+..-++..|...|.++.+
T Consensus 113 ~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 113 QLIGITGSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 455666642 3344566777888877644
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.004 Score=55.08 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 36999999999999999999999999999987654
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0057 Score=60.81 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|.+++++++|.+|..+++ |++.++.+.+|+++.||.||+.....|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 457888999999999999999999999987443 7888888888999999999997765553
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.027 Score=56.60 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC------CCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKIN------NIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~------g~~v~lv~~~ 195 (434)
-.|+|||+|..|+-+|..+++. |.+|+++++.
T Consensus 23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~ 60 (662)
T 3gyx_A 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60 (662)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence 3799999999999999999997 9999999874
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0075 Score=58.75 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
|+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~G 37 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPG 37 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC----
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCC
Confidence 689999999999999999999999999999987753
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.019 Score=52.39 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=58.0
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e-~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
..+++.|||.|-+|+. +|..|.+.|.+|++.+..+.. + ..+.|++.|++++.+.....+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~-----~~~~L~~~gi~v~~g~~~~~l--------- 62 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P-----MSTQLEALGIDVYEGFDAAQL--------- 62 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H-----HHHHHHhCCCEEECCCCHHHc---------
Confidence 4689999999999996 899999999999999876421 1 234577889998866421110
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
.. ..+|.||.++|..|..+.+
T Consensus 63 ----~~---~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 63 ----DE---FKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp ----GS---CCCSEEEECTTCCTTCHHH
T ss_pred ----CC---CCCCEEEECCCcCCCCHHH
Confidence 00 1389999999988776544
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=50.12 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=68.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|||+|.+|...+..|.+.|.+|+++.+. +.++ +.++.++.+++++...- ..
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~~~~----~~-------- 86 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKRKKV----GE-------- 86 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEECSCC----CG--------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEECCC----CH--------
Confidence 5799999999999999999999999999999753 3444 33444556677653321 11
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCC-----CCCCCCCcEEEecccc
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVGDVA 299 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~GD~~ 299 (434)
+.--.+|+||.||+.......+.... . .++.||- .+.--.|.++--|+..
T Consensus 87 -----~dL~~adLVIaAT~d~~~N~~I~~~a--k-~gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 87 -----EDLLNVFFIVVATNDQAVNKFVKQHI--K-NDQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp -----GGSSSCSEEEECCCCTHHHHHHHHHS--C-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred -----hHhCCCCEEEECCCCHHHHHHHHHHH--h-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 00113899999999754433332111 2 4566653 2222467777777644
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0097 Score=54.43 Aligned_cols=76 Identities=11% Similarity=0.081 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCccCCcc------CC-HHHHHHHHHHHHhcCcEEE
Q 013914 153 KLVEAIKAKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWCMPRL------FT-ADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 153 ~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~--~g~~v~lv~~~~~~~~~~------~~-~~~~~~~~~~l~~~GV~~~ 223 (434)
++.+.+.......|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.... ++ ..+.+.+.+.+++.|+++.
T Consensus 55 ~~~~~~~~~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~ 134 (326)
T 3fpz_A 55 RYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYE 134 (326)
T ss_dssp HHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCE
T ss_pred HHHhhhhhccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEE
Confidence 33444544456789999999999999999964 699999999876543211 11 1112234456778888887
Q ss_pred cCCeE
Q 013914 224 KGTVA 228 (434)
Q Consensus 224 ~~~~v 228 (434)
.+...
T Consensus 135 ~~~~~ 139 (326)
T 3fpz_A 135 DEGDY 139 (326)
T ss_dssp ECSSE
T ss_pred ECCcc
Confidence 66543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.016 Score=55.56 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.++++.|+|.|.+|+.+|..|.+.|.+|+..+..+... ++ ..+.|++.|++++.+.....+
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~~-----~~~~L~~~gi~~~~g~~~~~~---------- 68 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----NP-----TAQSLLEEGIKVVCGSHPLEL---------- 68 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----CH-----HHHHHHHTTCEEEESCCCGGG----------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----Ch-----HHHHHHhCCCEEEECCChHHh----------
Confidence 57899999999999999999999999999998764211 11 234678889999877531100
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
+. + .+|.||+++|..++...+
T Consensus 69 --~~-~---~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 --LD-E---DFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp --GG-S---CEEEEEECTTSCTTSHHH
T ss_pred --hc-C---CCCEEEECCcCCCCChhH
Confidence 00 0 178999999988776544
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=45.36 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+++|+|+|..|...|..|.+.|.+ |+++|+++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~---V~~id~~~ 39 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKK---VLAVDKSK 39 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 46899999999999999999999987 99999873
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.022 Score=45.55 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.+++|+|+|..|...|..|.+.|.+ |+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~---V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQN---VTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCC---EEEEECC
Confidence 56899999999999999999998887 9999986
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.019 Score=43.32 Aligned_cols=34 Identities=9% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~ 41 (434)
+++|+|+|+|..|...+..|.+.| .+ |+++++++
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~---v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYS---VTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEE---EEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCce---EEEEeCCH
Confidence 468999999999999999999988 54 99998863
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.02 Score=53.57 Aligned_cols=99 Identities=18% Similarity=0.247 Sum_probs=74.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----C------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----F------------------------------------ 203 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----~------------------------------------ 203 (434)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+.... +
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 48999999999999999999999999999865431100 0
Q ss_pred ---------------CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe-CCC--cEEECCEEEEcccCccC
Q 013914 204 ---------------TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL-KDG--RTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ---------------~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~-~~g--~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++.++++..+.. +++.+..+.. .++ .++.+|+||-|.|....
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~-~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S~ 163 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIK-ENGKVAGAKIRHNNEIVDVRAKMVIAADGFESE 163 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEE-ETTEEEEEEEEETTEEEEEEEEEEEECCCTTCH
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeee-ccceeeeeeecccccceEEEEeEEEeCCccccH
Confidence 013456677778889999999999999877 3555544443 233 36889999999997543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.026 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||+|..|...|..|.+.|.+ |+++++++
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~---V~vid~~~ 52 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHS---VVVVDKNE 52 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999998875 99999874
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.033 Score=43.73 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+++|+|.|..|...|..|.+.|.+ |+++|+++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIP---LVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 45799999999999999999999987 99999973
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.026 Score=44.10 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
.++|+|||+|..|...|..|.+.|.+ |+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~---v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHD---IVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECC
Confidence 35799999999999999999998876 9999986
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.016 Score=56.32 Aligned_cols=127 Identities=14% Similarity=0.133 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~-aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
+.++|.|||.|-+|++ +|..|.++|++ |++.|.... ...+.+
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~---V~~~D~~~~----------------------------------~~~~~l 63 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQ---ISGSDLAPN----------------------------------SVTQHL 63 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCE---EEEECSSCC----------------------------------HHHHHH
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCe---EEEEECCCC----------------------------------HHHHHH
Confidence 3578999999999997 69999999987 999886521 112446
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCC
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKK 162 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~ 162 (434)
++.|+++..+... + . + ..+|.+|+.+|..+..|. +......++-.+...+- +.+.++ .
T Consensus 64 ~~~gi~~~~g~~~-----~--~--~-----~~~d~vV~Spgi~~~~p~---~~~a~~~gi~v~~~~e~---l~~~~~--~ 121 (494)
T 4hv4_A 64 TALGAQIYFHHRP-----E--N--V-----LDASVVVVSTAISADNPE---IVAAREARIPVIRRAEM---LAELMR--Y 121 (494)
T ss_dssp HHTTCEEESSCCG-----G--G--G-----TTCSEEEECTTSCTTCHH---HHHHHHTTCCEEEHHHH---HHHHHT--T
T ss_pred HHCCCEEECCCCH-----H--H--c-----CCCCEEEECCCCCCCCHH---HHHHHHCCCCEEcHHHH---HHHHhc--C
Confidence 6779988876321 1 0 1 137999999997765443 11111122212222222 222222 1
Q ss_pred CCcEEEECCC---HHHHHHHHHHHhCCCeE
Q 013914 163 NGKAVVVGGG---YIGLELSAALKINNIDV 189 (434)
Q Consensus 163 ~~~v~ViG~g---~~~~e~a~~l~~~g~~v 189 (434)
.+.+.|-|+. -+..-++..|...|.+.
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~ 151 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDP 151 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCC
Confidence 2245666642 23445666677777653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.034 Score=50.77 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=54.2
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhH
Q 013914 4 KSFKYVILGGGVSAGY-AAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWY 82 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~-aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
.+++|.|||.|.+|++ +|..|.++|++ |++.|..... ...+.+
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~---V~~~D~~~~~---------------------------------~~~~~L 46 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFE---VSGCDAKMYP---------------------------------PMSTQL 46 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCE---EEEEESSCCT---------------------------------THHHHH
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCE---EEEEcCCCCc---------------------------------HHHHHH
Confidence 3568999999999997 78889999987 9999987420 113446
Q ss_pred hhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 83 KEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 83 ~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
++.|+++..+... + . +.. ..+|.+|+.+|-.+..|.
T Consensus 47 ~~~gi~v~~g~~~-----~--~--l~~---~~~d~vV~Spgi~~~~p~ 82 (326)
T 3eag_A 47 EALGIDVYEGFDA-----A--Q--LDE---FKADVYVIGNVAKRGMDV 82 (326)
T ss_dssp HHTTCEEEESCCG-----G--G--GGS---CCCSEEEECTTCCTTCHH
T ss_pred HhCCCEEECCCCH-----H--H--cCC---CCCCEEEECCCcCCCCHH
Confidence 6778888776321 1 0 000 137899999987665443
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.034 Score=54.05 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCC-----------------HHHHHHHHHHHHhcCcEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT-----------------ADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~GV~~ 222 (434)
.+.+|+|||+|.+|+.+|..|.+.|.+|+++++.+++..+... ......+.+.+++.|+++
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~ 109 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL 109 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence 3578999999999999999999999999999998776543100 001345667777888765
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.041 Score=43.12 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+|+|+|+|..|...|..|.+.|.+ |++++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~---v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 45799999999999999999998876 89999863
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.036 Score=50.11 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
|+|+..+|.|||+|..|.+.|..|++.|+ .+|+++|.+
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~ 41 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP 41 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence 66667899999999999999999999887 359999987
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.042 Score=49.00 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|| +..+|.|||+|.-|...|..|++.|++ |+++|+++
T Consensus 1 Mm-~~~kV~VIGaG~mG~~iA~~la~~G~~---V~l~d~~~ 37 (283)
T 4e12_A 1 MT-GITNVTVLGTGVLGSQIAFQTAFHGFA---VTAYDINT 37 (283)
T ss_dssp CC-SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEeCCH
Confidence 54 457899999999999999999999986 99999874
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.09 Score=50.96 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+||+|||||++||+||..|++.|++ |+|+|+++..
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g~~---v~v~E~~~~~ 74 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAGFK---TLLLEARDRI 74 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCC---EEEECSSSBS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCC---EEEEeCCCCC
Confidence 7999999999999999999999987 9999999764
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.046 Score=51.77 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 6899999999999999999999999999987664
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.18 Score=50.10 Aligned_cols=38 Identities=13% Similarity=0.358 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
+.|||+|||+|..|...|..|++.|.+ |++||++++.+
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~---vl~id~~~~~g 44 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSRSGQR---VLHVDSRSYYG 44 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCCccc
Confidence 469999999999999999999999987 99999998743
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.056 Score=51.22 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6899999999999999999999999999998765
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.046 Score=52.03 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
.++|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999999999999999999999999875
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.062 Score=45.78 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.++|+|||||..|...+..|.+.|.+ |+|++++
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~---VtVvap~ 63 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAA---ITVVAPT 63 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCC---EEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEECCC
Confidence 457899999999999999999999876 9999986
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.11 Score=51.41 Aligned_cols=170 Identities=12% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC----------------------------------------
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV---------------------------------------- 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~---------------------------------------- 42 (434)
..+..++|+|.|..|...|..|.+.+.+ |+++|+++.
T Consensus 125 ~~~~hviI~G~g~~g~~la~~L~~~~~~---vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~t~~ 201 (565)
T 4gx0_A 125 DTRGHILIFGIDPITRTLIRKLESRNHL---FVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIANLS 201 (565)
T ss_dssp TCCSCEEEESCCHHHHHHHHHTTTTTCC---EEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEECSC
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEEeCC
Q ss_pred ----------------------------------------------------CCCCCCccCccccCCCCCCCCCCccccc
Q 013914 43 ----------------------------------------------------APYERPALSKAYLFPEGTARLPGFHVCV 70 (434)
Q Consensus 43 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (434)
.....|.....++.......+..+...
T Consensus 202 D~~n~~~~~~ar~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~v~- 280 (565)
T 4gx0_A 202 DPDNANLCLTVRSLCQTPIIAVVKEPVHGELLRLAGANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELPVH- 280 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSGGGHHHHHHHTCSEEECHHHHHHHHHHHHHHC-----------------------
T ss_pred cHHHHHHHHHHHHhcCceEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEEEC-
Q ss_pred CCCCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHH
Q 013914 71 GSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDD 150 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~ 150 (434)
+ .......+.+....-..+..+..+..+++.+.......+...-.++..|...........-+...+
T Consensus 281 ~---s~l~G~~l~el~~~~~~~~~vi~i~r~g~~~~p~~~~~l~~GD~L~v~g~~~~l~~~~~~~~~~~~---------- 347 (565)
T 4gx0_A 281 G---TPFAGKTIGESGIRQRTGLSIIGVWERGSLTTPQRETVLTEQSLLVLAGTKSQLAALEYLIGEAPE---------- 347 (565)
T ss_dssp ---------------------------------------------------------------------C----------
T ss_pred C---CccCCCCHHHcCcchhcCCEEEEEEECCEEeCCCCCcEeCCCCEEEEEeCHHHHHHHHHHhcCCCC----------
Q ss_pred HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc
Q 013914 151 ADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201 (434)
Q Consensus 151 ~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~ 201 (434)
. ++++|+|+|..|..+|..|.+.|.+|++++..+.....
T Consensus 348 -----------~-~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~ 386 (565)
T 4gx0_A 348 -----------D-ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN 386 (565)
T ss_dssp -----------C-CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC
T ss_pred -----------C-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.07 Score=49.60 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=46.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CccCCccC-------------C------------HHHHHHHHHHH
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE-PWCMPRLF-------------T------------ADIAAFYEGYY 215 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~-~~~~~~~~-------------~------------~~~~~~~~~~l 215 (434)
.+.+|+|||+|..|+-+|..|.+.|.+|+++++. +++..+.. . ......+.+.+
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~ 122 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALI 122 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHH
Confidence 3578999999999999999999999999999988 55422110 0 12245677888
Q ss_pred HhcCcEEE
Q 013914 216 ANKGIKII 223 (434)
Q Consensus 216 ~~~GV~~~ 223 (434)
++.|++..
T Consensus 123 ~~lGl~~~ 130 (376)
T 2e1m_A 123 DKLGLKRR 130 (376)
T ss_dssp HHTTCCEE
T ss_pred HHcCCCcc
Confidence 89898654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.077 Score=50.24 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCcc----------------CCHHHHHHHHHHHHhcCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRL----------------FTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~----------------~~~~~~~~~~~~l~~~GV~~~ 223 (434)
...+++|||+|..|+-+|..|.+.| .+|+++++.+++..+. +.. ....+.+.+++.|+++.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~-~~~~~~~l~~~~g~~~~ 82 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVP-SYDTIQEIMDRTGDKVD 82 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCT-TCHHHHHHHHHHCCCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecC-CcHHHHHHHHHhCCccc
Confidence 3568999999999999999999999 9999999887653210 111 12346677788887653
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.12 Score=49.46 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
..+||||||+|++||+||..|++.|++ |+|+|+++..+
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~~---V~vlE~~~~~G 47 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGKK---VLHIDKQDHYG 47 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCCCCC
Confidence 468999999999999999999999987 99999998643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.091 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~ 41 (434)
..+|+|||+|..|...|..|.+. |.+ |+++|+++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~---V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKI---SLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSC---EEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCe---EEEEECCH
Confidence 35799999999999999999998 887 99999873
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.065 Score=49.44 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
..|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~ 38 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEG 38 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4799999999999999999999999999998853
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.076 Score=47.83 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.+.+|.|||+|.-|...|..|++.|++ |+++|+++
T Consensus 14 ~~~~I~VIG~G~mG~~iA~~la~~G~~---V~~~d~~~ 48 (302)
T 1f0y_A 14 IVKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE 48 (302)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 356899999999999999999999886 99999874
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.082 Score=51.25 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e-~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
..+++.|||-|-+|+. +|..|.+.|.+|+..+..+ .+ ..+.|++.|++++.+.....
T Consensus 21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~-------~~-----~~~~l~~~gi~~~~g~~~~~---------- 78 (494)
T 4hv4_A 21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP-------NS-----VTQHLTALGAQIYFHHRPEN---------- 78 (494)
T ss_dssp -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCEEESSCCGGG----------
T ss_pred cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC-------CH-----HHHHHHHCCCEEECCCCHHH----------
Confidence 3589999999999996 7999999999999987542 12 22457888999987642110
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
+ ..+|+||+++|..+....+
T Consensus 79 ---~-----~~~d~vV~Spgi~~~~p~~ 98 (494)
T 4hv4_A 79 ---V-----LDASVVVVSTAISADNPEI 98 (494)
T ss_dssp ---G-----TTCSEEEECTTSCTTCHHH
T ss_pred ---c-----CCCCEEEECCCCCCCCHHH
Confidence 0 1389999999987765443
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.082 Score=49.07 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
+.++|||+|..|+++|..+++.|.+|+++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 479999999999999999999999999999765
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.067 Score=50.79 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999999999987654
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.067 Score=51.54 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--eEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNI--DVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~--~v~lv~~~~~~ 198 (434)
++|+|||+|.+|+-+|..|.+.|. +|+++++.+++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 589999999999999999999999 99999987654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.11 Score=41.50 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
...+++|+|+|.+|..++..|.+.|.+|+++++.+..
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~ 54 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYA 54 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGG
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 5689999999999999999999999999999876443
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.079 Score=50.44 Aligned_cols=40 Identities=13% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
|++.+||+|||+|++|+++|..|++.|.+ |+|+|+++..+
T Consensus 3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~---v~~~e~~~~~g 42 (433)
T 1d5t_A 3 MDEEYDVIVLGTGLTECILSGIMSVNGKK---VLHMDRNPYYG 42 (433)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCc---EEEEecCCCcc
Confidence 44578999999999999999999999987 99999987643
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.075 Score=49.10 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
||+ +.+|.|||+|..|...|..|++.|.+ |++++++
T Consensus 1 mm~-~mki~iiG~G~~G~~~a~~L~~~g~~---V~~~~r~ 36 (359)
T 1bg6_A 1 MIE-SKTYAVLGLGNGGHAFAAYLALKGQS---VLAWDID 36 (359)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred CCC-cCeEEEECCCHHHHHHHHHHHhCCCE---EEEEeCC
Confidence 554 46899999999999999999998875 9999876
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.093 Score=48.42 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=31.7
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|.+++++|.|||+|.-|.+.|..|++.|.+ |+++++++
T Consensus 25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~---V~l~~r~~ 62 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGTALALVLARKGQK---VRLWSYES 62 (356)
T ss_dssp --CCCSCEEEECCSHHHHHHHHHHHTTTCC---EEEECSCH
T ss_pred ccccCCeEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 334457899999999999999999999876 99999873
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.091 Score=50.84 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
..+|+|||+|..|+-+|..|.+.|.+|+++++.+++.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 47 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG 47 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5689999999999999999999999999999887643
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.081 Score=49.60 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 37999999999999999999999999999987543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.093 Score=44.64 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|+|+|+|..|...|..|.+.|.+ |+++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~---v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYG---VVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCC---EEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 699999999999999999999886 99999873
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.065 Score=52.13 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~-~g~~v~lv~~~~~~~ 199 (434)
.|+|||+|.+|+-+|..|++ .|.+|+++++.+++.
T Consensus 12 DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G 47 (513)
T 4gde_A 12 DVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG 47 (513)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred CEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence 58999999999999999987 599999999887754
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.086 Score=51.48 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~ 198 (434)
..+|+|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 358999999999999999999999 999999987654
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=93.12 E-value=0.097 Score=51.14 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=46.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----------------CCHHHHHHHHHHHHhcCcEEEc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----------------FTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++..+. +... ...+.+.+++.|++...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~ 81 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK 81 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence 3589999999999999999999999999999987763221 1111 34566778888987653
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.081 Score=50.01 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
..|+|||+|+.|+.+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.11 Score=47.14 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|+|||+|..|.+.|..|+..+. ..+|.++|.+.
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 45799999999999999999999875 34699999863
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.098 Score=47.50 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=32.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
|+++..+|.|||+|..|.+.|..|+..+. ..+++++|.+
T Consensus 1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~ 39 (326)
T 3pqe_A 1 MNKHVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN 39 (326)
T ss_dssp -CCSCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence 66667899999999999999999999876 2359999975
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.091 Score=49.00 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
..|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3799999999999999999999999999998653
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.11 Score=49.95 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|+|+..+|.|||+|.-|...|..|++.|++ |+++|++.
T Consensus 1 Msm~~~kVgVIGaG~MG~~IA~~la~aG~~---V~l~D~~~ 38 (483)
T 3mog_A 1 MSLNVQTVAVIGSGTMGAGIAEVAASHGHQ---VLLYDISA 38 (483)
T ss_dssp ---CCCCEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 555567899999999999999999999987 99999874
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.098 Score=48.68 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
..|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999873
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.062 Score=52.63 Aligned_cols=35 Identities=17% Similarity=0.359 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHh------------CCCeEEEEccCCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKI------------NNIDVSMVYPEPW 197 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~------------~g~~v~lv~~~~~ 197 (434)
..+|+|||+|+.|+-+|..|++ .|.+|+++++.+.
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~ 53 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV 53 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence 4689999999999999999999 8999999998643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.41 Score=37.26 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
.++++|+|.|..|..++..|.+.|.+|+++++. ++..+ .+++.|+.++.+..- +.. .+
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~---------~~~~~----~~~~~g~~~i~gd~~-------~~~--~l 64 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETS---------RTRVD----ELRERGVRAVLGNAA-------NEE--IM 64 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESC---------HHHHH----HHHHTTCEEEESCTT-------SHH--HH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC---------HHHHH----HHHHcCCCEEECCCC-------CHH--HH
Confidence 468999999999999999999999999999863 33332 244567776544210 000 00
Q ss_pred EeCCCcEEECCEEEEcccCcc
Q 013914 243 KLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p 263 (434)
. .-+ .-.+|.+|++++...
T Consensus 65 ~-~a~-i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 65 Q-LAH-LECAKWLILTIPNGY 83 (140)
T ss_dssp H-HTT-GGGCSEEEECCSCHH
T ss_pred H-hcC-cccCCEEEEECCChH
Confidence 0 001 125899999999654
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.042 Score=52.49 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.++++.|+|.|.+|+..|..|.+.|.+|+..+..+.... . ..++ .|++++.+... . . .
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~---~--------~~l~-~G~~~~~g~~~----~---~---~ 61 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG---L--------DKLP-EAVERHTGSLN----D---E---W 61 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT---G--------GGSC-TTSCEEESSCC----H---H---H
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch---h--------HHhh-CCCEEEECCCc----H---H---H
Confidence 468999999999999999999999999999987653211 1 2345 68888766421 0 0 0
Q ss_pred EEeCCCcEEECCEEEEcccCccChhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
+. .+|.||+++|..|....
T Consensus 62 --~~-----~~d~vV~s~gi~~~~p~ 80 (439)
T 2x5o_A 62 --LM-----AADLIVASPGIALAHPS 80 (439)
T ss_dssp --HH-----TCSEEEECTTSCTTCHH
T ss_pred --hc-----cCCEEEeCCCCCCCCHH
Confidence 01 37899999998765443
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.069 Score=45.61 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEE-EeCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAI-ISKE 40 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~v-ie~~ 40 (434)
|++++|.|||+|.-|.+.|..|.+.|++ |++ ++++
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~---V~~v~~r~ 56 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIP---AIIANSRG 56 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCC---EEEECTTC
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 3356899999999999999999998876 887 6665
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.11 Score=48.02 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
...|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999875
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.11 Score=50.00 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
...+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~ 51 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 51 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence 3578999999999999999999999999999988764
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.1 Score=48.43 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.+.|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 579999999999999999999 59999999988644
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.15 Score=46.10 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|+...+|.|||+|.-|...|..|.+.|++ |++++++.
T Consensus 27 ~~~~~~I~iIG~G~mG~~~a~~l~~~g~~---V~~~~~~~ 63 (316)
T 2uyy_A 27 TPTDKKIGFLGLGLMGSGIVSNLLKMGHT---VTVWNRTA 63 (316)
T ss_dssp CCCSSCEEEECCSHHHHHHHHHHHHTTCC---EEEECSSG
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 34457899999999999999999998876 99998763
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.1 Score=49.80 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=76.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||.|.+|+++|..|+++|++ |+++|.....+ ....++
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~---v~~~D~~~~~~---------------------------------~~~~l~- 47 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMTPP---------------------------------GLDKLP- 47 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCC---CEEEESSSSCT---------------------------------TGGGSC-
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCE---EEEEECCCCcc---------------------------------hhHHhh-
Confidence 46899999999999999999999987 89999875311 012233
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 164 (434)
.|+++..++.. ...+ . .+|.+|+++|..+..|. +......++-.+...+- +... .+.+
T Consensus 48 ~G~~~~~g~~~------~~~~------~-~~d~vV~s~gi~~~~p~---~~~a~~~~~~v~~~~~~---~~~~---~~~~ 105 (439)
T 2x5o_A 48 EAVERHTGSLN------DEWL------M-AADLIVASPGIALAHPS---LSAAADAGIEIVGDIEL---FCRE---AQAP 105 (439)
T ss_dssp TTSCEEESSCC------HHHH------H-TCSEEEECTTSCTTCHH---HHHHHHTTCEEECHHHH---HHHH---CCSC
T ss_pred CCCEEEECCCc------HHHh------c-cCCEEEeCCCCCCCCHH---HHHHHHCCCcEEEHHHH---HHHh---cCCC
Confidence 46666655311 0000 0 36889999997665443 22211122222332222 2222 2345
Q ss_pred cEEEECCC---HHHHHHHHHHHhCCCeEEEEc
Q 013914 165 KAVVVGGG---YIGLELSAALKINNIDVSMVY 193 (434)
Q Consensus 165 ~v~ViG~g---~~~~e~a~~l~~~g~~v~lv~ 193 (434)
.+.|-|+. -+..-++..|...|.++.+..
T Consensus 106 vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~g 137 (439)
T 2x5o_A 106 IVAITGSNGKSTVTTLVGEMAKAAGVNVGVGG 137 (439)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 66777753 345567777888888876543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.13 Score=46.82 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~~ 41 (434)
+.+|.|||+|..|.+.|..|++.|+ + |+++|.+.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~---V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELAD---VVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCE---EEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe---EEEEECCh
Confidence 3689999999999999999999886 4 99999874
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.3 Score=44.25 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=52.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEc-CCeEEEEEecCCCcEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK-GTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~-~~~v~~i~~~~~g~v~~v 242 (434)
.++.|+|+|.+|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.. ...-..+.. ..+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~----------~-----~~i~~~Gl~~~~~~~g~~~~~~------~~~ 61 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD----------Y-----ETVKAKGIRIRSATLGDYTFRP------AAV 61 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT----------H-----HHHHHHCEEEEETTTCCEEECC------SCE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh----------H-----HHHHhCCcEEeecCCCcEEEee------eee
Confidence 479999999999999999999999999997642 0 345666776543 110001100 011
Q ss_pred EeCCCc-EE-ECCEEEEcccCccChhhh
Q 013914 243 KLKDGR-TL-EADIVVVGVGGRPLISLF 268 (434)
Q Consensus 243 ~~~~g~-~~-~~D~vi~a~G~~p~~~~~ 268 (434)
. .+-. .. .+|+||+|+-.....+.+
T Consensus 62 ~-~~~~~~~~~~DlVilavK~~~~~~~l 88 (320)
T 3i83_A 62 V-RSAAELETKPDCTLLCIKVVEGADRV 88 (320)
T ss_dssp E-SCGGGCSSCCSEEEECCCCCTTCCHH
T ss_pred E-CCHHHcCCCCCEEEEecCCCChHHHH
Confidence 1 1211 12 589999999876655444
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.059 Score=47.45 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+.|+|||||..|...+..|.+.|.+ |+|++++.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~---VtViap~~ 46 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPDL 46 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCE---EEEEcCCC
Confidence 357899999999999999999999876 99999863
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=92.50 E-value=0.18 Score=40.00 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 578999999999999999999999999999864
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.13 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||+|.+|+.+|..|...|.+ |+++|++.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 223 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGAV---VSATDVRP 223 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSST
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999999875 99999874
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.094 Score=47.04 Aligned_cols=34 Identities=12% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~---V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGG---VTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTC---EEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 46899999999999999999999986 99998874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.13 Score=46.58 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+..+|.|||+|..|.+.|..|++.|+. +|+++|.+.
T Consensus 3 ~~~kI~VIGaG~~G~~ia~~la~~g~~--~V~l~D~~~ 38 (317)
T 2ewd_A 3 ERRKIAVIGSGQIGGNIAYIVGKDNLA--DVVLFDIAE 38 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc--eEEEEeCCc
Confidence 356899999999999999999998862 299999874
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.13 Score=48.14 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.+++|||+|.+|+.+|..|.+.|.+|+++++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999987655
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.14 Score=47.19 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|||+|+|.||+.+|..|...|.+ +|+++|++.
T Consensus 188 d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G 222 (398)
T 2a9f_A 188 EVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG 222 (398)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred ccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence 46899999999999999999999974 399999984
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.15 Score=49.45 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
..+++|||+|..|+-+|..|.+.|.+|+++++.+++.
T Consensus 13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G 49 (504)
T 1sez_A 13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 49 (504)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 4689999999999999999999999999999987763
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.16 Score=47.02 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
++|+|||||..|..++..+++.|++ |+++|.++.
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~~G~~---vv~vd~~~~ 35 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKKAGMK---VVLVDKNPQ 35 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCCC
Confidence 6899999999999999999999998 899998764
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.14 Score=47.11 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|||+|+|.+|..+|..|...|.+ +|+++|++.
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~G 226 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKG 226 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCC
Confidence 57899999999999999999999864 399999983
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.14 Score=47.30 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|+++++|.|||.|.-|...|..|++.|++ |++++++.
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~---V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRKGGHE---CVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 44567899999999999999999999976 99998873
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.14 Score=47.86 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 347999999999999999999999999999987664
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.15 Score=48.67 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 47999999999999999999999999999987665
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.15 Score=48.55 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~ 198 (434)
...|+|||+|..|+-+|..|++.|. +|+++++.+..
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~ 42 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP 42 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence 3579999999999999999999999 99999987653
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=92.03 E-value=0.15 Score=48.71 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~ 61 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 61 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 57999999999999999999999999999987643
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.14 Score=47.32 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||+|..|+.+|..|+..|.+ |+++|++.
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~lGa~---V~v~D~~~ 217 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRLGAK---TTGYDVRP 217 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSG
T ss_pred CCEEEEECchHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999999875 99999874
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.17 Score=45.89 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.+.+|.|||+|..|...|..|+..|+- +|+++|.+.
T Consensus 3 ~~~kI~VIGaG~vG~~ia~~la~~g~~--~v~L~Di~~ 38 (322)
T 1t2d_A 3 PKAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK 38 (322)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCC--eEEEEeCCH
Confidence 356899999999999999999998862 299999863
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.17 Score=39.46 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 468999999999999999999999999999853
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.13 Score=48.22 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHh-CC-CeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKI-NN-IDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~-~g-~~v~lv~~~~ 196 (434)
..|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999999875
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.69 E-value=0.16 Score=47.67 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKIN-NIDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~-g~~v~lv~~~~~~ 198 (434)
..+++|||+|..|+-+|..|.+. |.+|+++++.+++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 35899999999999999999998 9999999987654
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.2 Score=45.74 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
.++|.|||+|.-|.+.|..|++.|.+ |++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~---V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEA---INVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCC---EEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCE---EEEEECh
Confidence 45899999999999999999999876 9999874
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=91.61 E-value=0.15 Score=46.06 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.++|.|||+|..|..+|..++..|.+|++++..+..
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~ 41 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQ 41 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 578999999999999999999999999999876544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.18 Score=50.99 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 307 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAP 307 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 58999999999999999999999999999986443
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.17 Score=51.24 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~ 299 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQP 299 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSST
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 58999999999999999999999999999986543
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.2 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~ 196 (434)
..+|+|||+|+.|+-+|..|++ .|.+|+++++.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 4689999999999999999999 999999999864
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.18 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~ 196 (434)
..+|+|||+|+.|+.+|..|++ .|.+|+++++.+
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 4689999999999999999999 999999999864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.24 Score=44.84 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=30.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
++.+|+|||+|..|.+.|..|+..+. ..+|.++|.+
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~ 40 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 45799999999999999999998775 3459999875
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.38 Score=43.57 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 161 ~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
....++.|||+|.+|.-+|..|.+.|.+|+++ +.+... +.+++.|+.+. ......... .
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~-------------~~i~~~g~~~~-~~~~~~~~~------~ 75 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHV-------------QAIEATGLRLE-TQSFDEQVK------V 75 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHH-------------HHHHHHCEEEE-CSSCEEEEC------C
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHH-------------HHHHhCCeEEE-cCCCcEEEe------e
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEe
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIET 281 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~v 281 (434)
....+....-.+|.||+|+......+.++.-... ..+.+.+
T Consensus 76 ~~~~~~~~~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv 117 (318)
T 3hwr_A 76 SASSDPSAVQGADLVLFCVKSTDTQSAALAMKPALAKSALVL 117 (318)
T ss_dssp EEESCGGGGTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEE
T ss_pred eeeCCHHHcCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEE
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=91.28 E-value=0.17 Score=46.87 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+++|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 6899999999999999999999999999987654
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=91.19 E-value=0.24 Score=49.95 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..++++|||+|+.|+.+|..|.+.|.+|+++++.+++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~ 142 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV 142 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999987654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.14 Score=46.96 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC------CeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINN------IDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g------~~v~lv~~~~ 196 (434)
.|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999998 8999999864
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.31 Score=44.11 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=0.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC-CeEEEEEecCCCcEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG-TVAVGFTTNADGEVKE 241 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~-~~v~~i~~~~~g~v~~ 241 (434)
.++.|||.|..|.-+|..|.+.| .+|+++++.+....+ .+...+.+.+.|+ .. +.-..+..
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~------~~~~~~~~~~~g~---~~~s~~e~~~~-------- 87 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAA------SGALRARAAELGV---EPLDDVAGIAC-------- 87 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTT------HHHHHHHHHHTTC---EEESSGGGGGG--------
T ss_pred CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccc------hHHHHHHHHHCCC---CCCCHHHHHhc--------
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeC
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETD 282 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd 282 (434)
+|.|++|+......+.+..-... ..+.+.+|
T Consensus 88 ----------aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~ 119 (317)
T 4ezb_A 88 ----------ADVVLSLVVGAATKAVAASAAPHLSDEAVFID 119 (317)
T ss_dssp ----------CSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ----------CCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.2 Score=45.09 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
++|.|||+|.-|...|..|++.|++ |++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~---V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGND---VTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCc---EEEEECC
Confidence 4799999999999999999998875 9999886
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=91.10 E-value=0.23 Score=51.36 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~ 312 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 312 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence 46899999999999999999999999999997754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.21 Score=43.44 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+|+|||+|..|..+|..|++.|.. +++++|++..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~Gv~--~i~lvD~d~v 66 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV 66 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHcCCC--eEEEEcCCCc
Confidence 36899999999999999999999964 4999999854
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.21 Score=44.66 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|.|||+|.-|.+.|..|++.|.+ |++++++.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~---V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPH---TTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTT---CEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCe---EEEEEecc
Confidence 4799999999999999999998875 99999873
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.22 Score=45.21 Aligned_cols=32 Identities=19% Similarity=0.467 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
++|.|||+|.-|.+.|..|++.|.+ |++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHC---VSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCE---EEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe---EEEEeCC
Confidence 4799999999999999999998875 9999886
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.27 Score=44.33 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|.|||+|.-|..-|..++..|++ |+++|.++
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~---V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFR---VKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCC---EEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 46899999999999999999999998 99999874
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=90.90 E-value=0.18 Score=48.45 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~ 197 (434)
.+++|||+|.+|+-+|..|.+.| .+|+++++.++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~ 40 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 58999999999999999999999 99999998654
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.42 Score=46.59 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=56.3
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 162 KNGKAVVVGGGYIGLE-LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e-~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
+.+++.+||-|-+|+- +|..|.+.|.+|+..+..+. ++ ..+.|++.|++++.+.....+
T Consensus 18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~G~~~~~~--------- 77 (524)
T 3hn7_A 18 QGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEEGYLIAHL--------- 77 (524)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEESCCGGGG---------
T ss_pred cCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEECCCCHHHc---------
Confidence 5789999999999997 68889999999999886532 11 235577889998866421111
Q ss_pred EEEeCCCcEEECCEEEEcccCccChhhh
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
. -.+|+||..+|..+....+
T Consensus 78 ----~----~~~d~vV~Spgi~~~~p~l 97 (524)
T 3hn7_A 78 ----Q----PAPDLVVVGNAMKRGMDVI 97 (524)
T ss_dssp ----C----SCCSEEEECTTCCTTSHHH
T ss_pred ----C----CCCCEEEECCCcCCCCHHH
Confidence 0 1378999999987766544
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.32 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=28.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYP 194 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~ 194 (434)
..+++|+|+|.+|..++..|.+.|.+|+++++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 35899999999999999999999999999875
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=0.25 Score=44.90 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=29.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCC-CCcEEEEeCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVK-PGELAIISKE 40 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~-~~~V~vie~~ 40 (434)
+++++|.|||+|.-|.+.|..|.+.|.. ..+|++++++
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~ 58 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD 58 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 3456899999999999999999998821 1238888876
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=90.70 E-value=0.21 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-CCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGV-KPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~~V~vie~~ 40 (434)
.+.+|.|||.|.-|...|..|++.|+ + |++++++
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~---V~~~dr~ 57 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQAGAID---MAAYDAA 57 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHHSCCE---EEEECSS
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCe---EEEEcCC
Confidence 35789999999999999999999997 5 9999886
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.24 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
++|.|||+|.-|.+.|..|++.|.+ |++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~---V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGED---VHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCC---EEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCe---EEEEEcC
Confidence 4799999999999999999998876 9999886
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.35 Score=44.96 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..++|.|||+|.-|...+..+++.|++ |++++..+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~---viv~d~~~~ 46 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYK---VVVLDPSED 46 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEECCCC
Confidence 357899999999999999999999987 899988754
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.59 E-value=0.26 Score=44.32 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~---V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLS---TWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 46899999999999999999999986 99998863
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.17 Score=45.74 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=28.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHc-----C-CCCCcEEEEeC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQ-----G-VKPGELAIISK 39 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~-----g-~~~~~V~vie~ 39 (434)
|..++++|.|||+|.-|...|..|++. | .+ |+++++
T Consensus 4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~---V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLE---VSWIAR 45 (317)
T ss_dssp ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEE---EEEECC
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCC---EEEEEc
Confidence 333345899999999999999999998 7 65 999976
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.25 Score=46.30 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||+|.+|+.++..++..|.+ |+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGAI---VRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 46899999999999999999998875 99999874
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=90.40 E-value=0.37 Score=42.70 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++|+|.|+|..|...+..|.+.|.+ |+++.++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~---V~~~~r~~ 36 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHE---VTGLRRSA 36 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCC---EEEEECTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCc
Confidence 45799999999999999999999886 99998874
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.17 Score=49.25 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCeEEEEccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKI---NNIDVSMVYPEP 196 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~---~g~~v~lv~~~~ 196 (434)
.+|+|||+|..|+-+|..|++ .|.+|+++++.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence 479999999999999999999 999999999864
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=90.28 E-value=0.27 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|+|||+|..|...|..|++.|. ..+|++++++.
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 589999999999999999999886 12499999863
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.32 Score=37.78 Aligned_cols=34 Identities=26% Similarity=0.236 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
..++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred cCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999988753
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.32 Score=46.97 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCcc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWC 198 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~ 198 (434)
..+++|||+|..|+-+|..|.+.| .+|+++++.+++
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 468999999999999999999998 799999988654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.3 Score=36.41 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-IDVSMVYPE 195 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~ 195 (434)
.++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 889888764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=90.19 E-value=0.3 Score=45.55 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||+|.+|+.++..++..|.+ |+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga~---V~~~d~~~ 205 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA 205 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 46899999999999999999998875 99999874
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.22 Score=43.75 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+++++|||+|.+|...+..|.+.|.+|+++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4789999999999999999999999999999864
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.23 Score=47.61 Aligned_cols=36 Identities=25% Similarity=0.117 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CC-CCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GV-KPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~-~~~~V~vie~~~~ 42 (434)
+.++|.|||.|.-|+..|..|++. |+ + |+++|+++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~---V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEK---VLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCE---EEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCe---EEEEECChh
Confidence 346899999999999999999999 88 6 999999854
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=0.41 Score=44.70 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..++|+|||+|..|...+..+++.|++ |.+++.++.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~---vi~~d~~~~ 48 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYK---IAVLDPTKN 48 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCE---EEEEeCCCC
Confidence 346899999999999999999999987 899987654
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.35 Score=40.73 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|.|||+|.-|.+.|..|++.|.+ |+++++++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~---V~~~~~~~ 52 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHE---VTYYGSKD 52 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCE---EEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEcCCH
Confidence 35799999999999999999998875 99998874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.36 Score=45.47 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|||.|..|...|..|.+.|.+ |++||+++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~---vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVK---MVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCC---EEEEECCH
Confidence 45799999999999999999999987 99999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.33 Score=44.83 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|+|+|.+|+.++..|+..|.+ |+++++++
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga~---V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEeCCH
Confidence 36899999999999999999998874 99999873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.83 E-value=0.27 Score=41.78 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++++|+|.|| |..|...+..|.+.|.+ |.++.++.
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~---V~~~~r~~ 38 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFE---VTAVVRHP 38 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCE---EEEECSCG
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCE---EEEEEcCc
Confidence 3568999995 99999999999998876 99999874
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.31 Score=47.41 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.|+|||+|..|+-+|..+++.|.+|+++++.+..
T Consensus 43 DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~ 76 (510)
T 4at0_A 43 DVVVAGYGIAGVAASIEAARAGADVLVLERTSGW 76 (510)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 6899999999999999999999999999987654
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.98 Score=40.55 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=0.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL 244 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~ 244 (434)
++.|||+|.+|.-+|..|. .|.+|+++.|. ..-.+.+++.|+.+...... .. ..+..
T Consensus 4 kI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~-------------~~~~~~l~~~G~~~~~~~~~---~~------~~~~~ 60 (307)
T 3ego_A 4 KIGIIGGGSVGLLCAYYLS-LYHDVTVVTRR-------------QEQAAAIQSEGIRLYKGGEE---FR------ADCSA 60 (307)
T ss_dssp EEEEECCSHHHHHHHHHHH-TTSEEEEECSC-------------HHHHHHHHHHCEEEEETTEE---EE------ECCEE
T ss_pred EEEEECCCHHHHHHHHHHh-cCCceEEEECC-------------HHHHHHHHhCCceEecCCCe---ec------ccccc
Q ss_pred CCCcEEECCEEEEcc
Q 013914 245 KDGRTLEADIVVVGV 259 (434)
Q Consensus 245 ~~g~~~~~D~vi~a~ 259 (434)
.....-.+|+||+|+
T Consensus 61 ~~~~~~~~D~vilav 75 (307)
T 3ego_A 61 DTSINSDFDLLVVTV 75 (307)
T ss_dssp ESSCCSCCSEEEECC
T ss_pred cccccCCCCEEEEEe
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=89.72 E-value=0.2 Score=47.91 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCCCCCcEEEECCCHH-HHHHHHHHHHc--CCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVS-AGYAAREFAKQ--GVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~a-Gl~aA~~l~~~--g~~~~~V~vie~~~ 41 (434)
|||++.+|.|||+|.. |.+.|..|.+. +++..+|+++|.+.
T Consensus 24 m~m~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~ 67 (472)
T 1u8x_X 24 MKKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK 67 (472)
T ss_dssp --CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH
Confidence 5555679999999986 33346567776 44334599999874
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.29 Score=48.22 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
.-.|+|||+|..|+-+|..|++.|.+|.++++.+
T Consensus 18 ~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 18 QLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3579999999999999999999999999999874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.38 Score=42.72 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=29.0
Q ss_pred CcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
.+|.|||+ |.-|...|..|.+.|++ |++++++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~---V~~~~r~ 44 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHH---LAAIEIA 44 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSE---EEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECC
Confidence 58999999 99999999999998875 9999876
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=89.63 E-value=0.27 Score=47.16 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~ 41 (434)
+++|.|||.|..|+..|..|++. |++ |++++++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~---V~~~d~~~ 40 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIR---VTVVDVNE 40 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSE---EEEECSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCE---EEEEECCH
Confidence 46899999999999999999998 555 99999874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.43 Score=43.10 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|.|||.|.-|.+.|..|++.|+ ..+|+++++++
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~-~~~V~~~dr~~ 68 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP 68 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCC-CCEEEEEECCH
Confidence 3689999999999999999999987 22489998873
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=89.56 E-value=0.4 Score=44.99 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=31.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|+.++|.|+|+|..|...+..+++.|++ |.+++ .+.
T Consensus 22 m~~~~I~ilGgG~lg~~l~~aa~~lG~~---v~~~d-~~~ 57 (403)
T 3k5i_A 22 WNSRKVGVLGGGQLGRMLVESANRLNIQ---VNVLD-ADN 57 (403)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCE---EEEEE-STT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEE-CCC
Confidence 3467899999999999999999999997 88998 543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.39 Score=42.11 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.++++|||+|-+|.+++..|.+.|.+ |+|+.|+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~---v~V~nRt~ 151 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQ---VSVLNRSS 151 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCCH
Confidence 36899999999999999999999844 99998873
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.38 Score=43.35 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+|.|||.|.-|...|..|++.|++ |+++++++
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~---V~~~dr~~ 54 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFK---VTVWNRTL 54 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCe---EEEEeCCH
Confidence 46899999999999999999999986 99998873
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.44 E-value=0.34 Score=46.16 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|.|||.|.-|+..|..|++.|++ |+++|+++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~---V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGAN---VRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCE---EEEEECCH
Confidence 4799999999999999999999886 99999874
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.39 Score=43.46 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+..+|.|||+|..|.+.|..|+..++ . +|+++|.+.
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~-~-~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKEL-G-DVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC-C-eEEEEeCCc
Confidence 45689999999999999999999887 2 599999874
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.35 E-value=0.45 Score=42.17 Aligned_cols=37 Identities=16% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++|.|||+|.-|.+.|..|.+.|++..+|++++++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~ 39 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL 39 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence 4689999999999999999999987333599998873
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.19 E-value=0.44 Score=43.36 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCCCCCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
||++++.|+|.|| |..|...+..|.+.|.+ |+++++..
T Consensus 1 ~M~~~~~vlVTGatG~iG~~l~~~L~~~G~~---V~~~~r~~ 39 (341)
T 3enk_A 1 SMSTKGTILVTGGAGYIGSHTAVELLAHGYD---VVIADNLV 39 (341)
T ss_dssp -CCSSCEEEEETTTSHHHHHHHHHHHHTTCE---EEEECCCS
T ss_pred CCCCCcEEEEecCCcHHHHHHHHHHHHCCCc---EEEEecCC
Confidence 5666678999985 99999999999999876 99998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 434 | ||||
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 3e-24 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 2e-23 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 8e-23 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 4e-22 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 2e-18 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 5e-17 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 9e-17 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 2e-04 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 2e-14 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 1e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 2e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 7e-09 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 5e-13 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 8e-13 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 2e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 9e-11 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 2e-10 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 6e-10 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 9e-10 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 3e-09 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 3e-09 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 5e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 7e-09 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 8e-09 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 1e-08 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 1e-07 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 3e-07 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 8e-07 | |
| d1d7ya3 | 97 | d.87.1.1 (A:309-405) NADH-dependent ferredoxin red | 8e-07 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 8e-06 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 7e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 7e-05 | |
| d1q1ra3 | 103 | d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseu | 9e-05 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 1e-04 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 1e-04 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 1e-04 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-04 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 2e-04 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 4e-04 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 6e-04 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 0.001 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 0.001 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 0.001 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 0.001 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 0.003 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 0.003 |
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 94.9 bits (235), Expect = 3e-24
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
+ G D NI+ +R A KL + + VV+G GYIG+E + A V+++
Sbjct: 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 60
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+ + I I G + DG V++V + D +AD
Sbjct: 61 ILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYE--GDGRVQKV-VTDKNAYDAD 117
Query: 254 IVVVGV 259
+VVV V
Sbjct: 118 LVVVAV 123
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 92.9 bits (230), Expect = 2e-23
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
++GA + LR ++DA ++ ++ + + ++VGGG IGLEL+A + + VS+V
Sbjct: 4 LQGATM-PVHTLRTLEDARRIQAGLRPQS--RLLIVGGGVIGLELAATARTAGVHVSLVE 60
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+P M R A +A F Y+A +G+ + G V L DG + AD
Sbjct: 61 TQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS------VDGVVLLDDGTRIAAD 114
Query: 254 IVVVGVG 260
+VVVG+G
Sbjct: 115 MVVVGIG 121
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.4 bits (226), Expect = 8e-23
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 128 RLTDFGVEGADAK-NIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKIN- 185
L+ GA+ K R+I D L + + K ++GGG++G EL+ AL
Sbjct: 3 SLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVK--SITIIGGGFLGSELACALGRKA 60
Query: 186 ---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
+V ++PE M ++ ++ + +G+K++ + +
Sbjct: 61 RALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVG--VSSGKLLI 118
Query: 243 KLKDGRTLEADIVVVGVG 260
KLKDGR +E D +V VG
Sbjct: 119 KLKDGRKVETDHIVAAVG 136
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 89.6 bits (221), Expect = 4e-22
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196
A N YLR ++DA+ + + A + VV+GGGYIGLE++A N+ V+++
Sbjct: 11 GKANNFRYLRTLEDAECIRRQLIADN--RLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68
Query: 197 WCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIV 255
+ R+ ++AFYE + G+ I GT GF + D +V V +DG L AD+V
Sbjct: 69 RVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLV 128
Query: 256 VVGVG 260
+ G+G
Sbjct: 129 IAGIG 133
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 80.6 bits (197), Expect = 2e-18
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Query: 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-CMPRLFTADIAAFYEGYYANKGIK 221
N V+VG G G+E++ L+ + + ++ +P A+ G + +
Sbjct: 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLY 62
Query: 222 IIKGTVAVGF---------TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL---ISLFK 269
+ T + + ++V L DGR L+ D +V+ GGRPL L
Sbjct: 63 LRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELAS 122
Query: 270 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTI 329
+ GI ++ +TS + AVGD A F +LY R+E V +A + A + +
Sbjct: 123 AAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182
Query: 330 M 330
Sbjct: 183 C 183
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 74.7 bits (183), Expect = 5e-17
Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 13/127 (10%)
Query: 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVY 193
++G + + LR I DAD++ E+I+ +++GGG+IGLEL+ L V +++
Sbjct: 7 IKGKE--YLLTLRTIFDADRIKESIENSGEA--IIIGGGFIGLELAGNLAEAGYHVKLIH 62
Query: 194 PEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEAD 253
+ +++ + G+K + + +E L + +E
Sbjct: 63 RGAMFLG--LDEELSNMIKDMLEETGVKFFLNSELLEAN-------EEGVLTNSGFIEGK 113
Query: 254 IVVVGVG 260
+ + +G
Sbjct: 114 VKICAIG 120
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 75.9 bits (185), Expect = 9e-17
Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 19/179 (10%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYA 216
VV+G G + A L+ + + D
Sbjct: 7 VVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKR 66
Query: 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ----- 271
++ + G A F D + V L DGRTL +V+ G P L
Sbjct: 67 APEVEWLLGVTAQSF----DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122
Query: 272 VAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330
GI D + +T+ DVYA+GDV L R+E +A+ + ++
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 181
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 19/176 (10%)
Query: 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGF 66
V+LG G+++ E + G + G + ++ EA PY+RP LSK ++
Sbjct: 5 PVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDA------ 57
Query: 67 HVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTV 126
E++ + + +E +L D + T+ + G Y LV+ATG+
Sbjct: 58 --------EKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109
Query: 127 LRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKA----VVVGGGYIGLEL 178
+ A DA G + G + +E
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIET 165
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 67.3 bits (163), Expect = 2e-14
Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 10/128 (7%)
Query: 136 GADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195
G +AK +F D LVE + + VVVGG +E M+
Sbjct: 1 GVNAKGVF------DHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54
Query: 196 PWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV---KLKDGRTLEA 252
+ A+ +G++II G+ +A+G V+ V +E
Sbjct: 55 EPLKLI-KDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIET 113
Query: 253 DIVVVGVG 260
D V +G+G
Sbjct: 114 DFVFLGLG 121
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 65.2 bits (158), Expect = 1e-13
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)
Query: 144 YLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
Y + D L + + VVG GYIG+EL + + +P
Sbjct: 7 YGIDSDGFFALPALPE-----RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFD 61
Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
E +G ++ + N DG + ++L+DGR+ D ++ +G
Sbjct: 62 PMISETLVE-VMNAEGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIG 116
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.0 bits (162), Expect = 2e-13
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
A ++++GGG +A AAR + + I+S++ PY RP LSK F +
Sbjct: 1 APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDDPN 59
Query: 62 RLPGFHVCVGSGGERLLP-------------EWYKEKGIELILSTEIVRADIASKTLLSA 108
+G ER + + G+ ++ ++V+ D+ +
Sbjct: 60 VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 119
Query: 109 TGLIFKYQILVIATGST 125
G Y+ +IATG T
Sbjct: 120 DGSQITYEKCLIATGGT 136
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 7e-09
Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 45/212 (21%)
Query: 160 AKKNGKAVVVGGGYIGLELSAALKINNID--VSMVYPEPW-------------------- 197
A + +++GGG + +++ + V +V +P
Sbjct: 1 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNV 60
Query: 198 ---------------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242
+ + ++A + N G+ ++ G V D V
Sbjct: 61 TKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQL----DVRDNMV 116
Query: 243 KLKDGRTLEADIVVVGVGGRPLISLFKGQVA---ENKGGIETDDFFKTSADDVYAVGDVA 299
KL DG + + ++ GG ++ G + + +++ GD A
Sbjct: 117 KLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAA 176
Query: 300 TFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331
F RRVEH DHA S A + +
Sbjct: 177 CFYDIKL-GRRRVEHHDHAVVSGRLAGENMTG 207
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 63.2 bits (153), Expect = 5e-13
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 156 EAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215
E K++ K +VG GYI +EL +K ID + + + F + E
Sbjct: 15 EFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDM 73
Query: 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEA-DIVVVGV 259
I I+ V +D + + L DGR E D V+ V
Sbjct: 74 KKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 117
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 64.9 bits (156), Expect = 8e-13
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 24/190 (12%)
Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE------------PWCMPRLFT--ADIAAF 210
K +V+G + G E L + D + + E + +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 211 YEGYYANKGIKIIKGTVAVGFTTNADGEV-KEVKLKDGRTLEADIVVVGVGGRPLISLFK 269
++G+ + T K++ + R D +++ G P
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 270 GQVAE---------NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARK 320
G I+TD++ +TS DV+AVGD + +ARK
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 321 SAEQAVKTIM 330
AVK +
Sbjct: 182 QGRFAVKNLE 191
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 58.7 bits (141), Expect = 2e-11
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE--PWCMPRLFTADIAAFYEGYYANKGIK 221
+A+ VGGGYI +E + V + R F +++ GI
Sbjct: 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGIN 78
Query: 222 IIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
+ T NADG + V + G + D+V++ +G
Sbjct: 79 VRTHENPAKVTKNADG-TRHVVFESGAEADYDVVMLAIG 116
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.0 bits (137), Expect = 9e-11
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
GK +VVG Y+ LE + L +DV+++ F D+A + GIK I
Sbjct: 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78
Query: 224 KGTVAVGFTTNADGEVKEVKL-------KDGRTLEADIVVVGVG 260
+ V G +K+ ++ E + V++ VG
Sbjct: 79 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 56.0 bits (134), Expect = 2e-10
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 164 GKAVVVGGGYIGLELSAAL---KINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGI 220
+ + VGGG+I +E + K + V++ Y + F + GI
Sbjct: 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGI 79
Query: 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259
+I+ NADG K V + G+ ++ D+V++ +
Sbjct: 80 QILTKENPAKVELNADG-SKSVTFESGKKMDFDLVMMAI 117
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (130), Expect = 6e-10
Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 133 GVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMV 192
G+E D + I ++ + + ++GGG IGLE+ + V++V
Sbjct: 2 GIE-IDEEKIVSSTGALSLKEIPK--------RLTIIGGGIIGLEMGSVYSRLGSKVTVV 52
Query: 193 YPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR---- 248
+P ++A + + +G+ T + N D V E+ ++D +
Sbjct: 53 EFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQ 111
Query: 249 -TLEADIVVV 257
LEA++++V
Sbjct: 112 ENLEAEVLLV 121
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 54.1 bits (129), Expect = 9e-10
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 148 IDDADKLV---EAIKAKKN-GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF 203
I + +++ A+ K+ GK +++GGG IGLE+ + +V M
Sbjct: 7 IPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGAD 66
Query: 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVG 260
+ + + + I+ T V DG + + D V+V G
Sbjct: 67 RDLVKVWQK-QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 52.5 bits (125), Expect = 3e-09
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
VVVGGGYIGLEL A + VS+V +P + A E GI +
Sbjct: 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAE-SLKKLGIALH 80
Query: 224 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260
G G+ + LEAD V+V VG
Sbjct: 81 LGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVG 115
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 54.1 bits (129), Expect = 3e-09
Identities = 24/164 (14%), Positives = 53/164 (32%), Gaps = 21/164 (12%)
Query: 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA---AFYEGYYANK 218
K+ K +++G G G + N+ ++ T ++
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIVVVGVGGRP-----LI 265
++ + T + +V L++ D +++ G
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123
Query: 266 SLFKGQVAENKGGIETD-----DFFKTSADDVYAVGDVATFPMK 304
++F+GQ+ G I+ + +TS V+A GDV +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 5e-09
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223
G++V+VG GYI +E++ L S++ + + E N G++++
Sbjct: 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTE-ELENAGVEVL 81
Query: 224 KGTVAVGFTTNADG-EVKEVKLKDGR------TLEADIVVVGVG 260
K + G EV V GR + D ++ +G
Sbjct: 82 KFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 52.4 bits (124), Expect = 7e-09
Identities = 34/173 (19%), Positives = 57/173 (32%), Gaps = 14/173 (8%)
Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
K V+VG G G EL+ L +V+++ EP +
Sbjct: 2 KVVIVGNGPGGFELAKQLS-QTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 225 ------GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG 278
+ + ++V + + + D +V+ G + L + G
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPN-VDLARRSGIHTGRG 119
Query: 279 IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331
I DD F+TSA DVYA+GD A + A + A +
Sbjct: 120 ILIDDNFRTSAKDVYAIGDCAEYS------GIIAGTAKAAMEQARVLADILKG 166
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 51.3 bits (122), Expect = 8e-09
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 10/124 (8%)
Query: 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197
D I D + K V+G G IGLEL + +V+++
Sbjct: 5 DQDVIVDSTGALDFQNVPG--------KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK 56
Query: 198 CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVV 256
+P +A + +G+KI+ G G VK V + ++ D ++
Sbjct: 57 FLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLI 115
Query: 257 VGVG 260
V VG
Sbjct: 116 VAVG 119
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 51.8 bits (123), Expect = 1e-08
Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 23/157 (14%)
Query: 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSA 180
G+ LT + GADA L + + I + + ++ L+
Sbjct: 4 TDGTN--CLTHDPIPGADASLPDQLT-PEQVMDGKKKIGKRVV--ILNADTYFMAPSLAE 58
Query: 181 ALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTN------ 234
L +V++V FT + ++ +
Sbjct: 59 KLATAGHEVTIVSGVHLANYMHFTLEYPNMMR-RLHELHVEELGDHFCSRIEPGRMEIYN 117
Query: 235 -----------ADGEVKEVKLKDGRTLEADIVVVGVG 260
G R +E D +V+ G
Sbjct: 118 IWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 50.3 bits (119), Expect = 1e-07
Identities = 38/222 (17%), Positives = 66/222 (29%), Gaps = 57/222 (25%)
Query: 139 AKNIFYLREIDDADKLVEAIKA--KKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196
A I + E D +++ + + A+ +GGG G SA L+ +V P
Sbjct: 16 ATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75
Query: 197 W---------CMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK-- 245
+ C+P +D AA G ++
Sbjct: 76 FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGP 135
Query: 246 --------------------------------DGRTLEADIVVVGVGGRPLI-------- 265
G+ +A +++ VG P
Sbjct: 136 HGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPR 195
Query: 266 ----SLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ G KG + +++ +TS +VYAVGD+ PM
Sbjct: 196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM 237
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 48.3 bits (113), Expect = 3e-07
Identities = 30/189 (15%), Positives = 62/189 (32%), Gaps = 24/189 (12%)
Query: 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 222
K VVVGGG G + +K+ +I+V+++ P + ++ + K
Sbjct: 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYD 63
Query: 223 IKGTVAVGFTTNADGEVKEVKLK----DGRTLEADIVVVGVGGRP---LISLFKGQVAEN 275
+ ++ + K G D VV G I G++A+
Sbjct: 64 GLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQI 123
Query: 276 KG--------GIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVK 327
G ++ F + ++ +GD + M + + A + A
Sbjct: 124 AGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI-----ANPMPKSGYS--ANSQGKVAAA 176
Query: 328 TIMATEGGK 336
++ G+
Sbjct: 177 AVVVLLKGE 185
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.6 bits (107), Expect = 8e-07
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
VV+GGGYIG+EL A V+++ + F +AA + KG++++
Sbjct: 24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT 82
Query: 225 GTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVV 257
+A G DG V + +T++AD V+V
Sbjct: 83 NALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 97 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 44.8 bits (106), Expect = 8e-07
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 337 TVTGYDYLPYFYSRAFDLSWQFYGDN-VGDTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
T GY LP+++S L Q G + ++ G+ L + KF ++ G++VG
Sbjct: 1 TAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDA--PKFTLIELQKGRIVGA 57
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 44.5 bits (104), Expect = 8e-06
Identities = 30/191 (15%), Positives = 48/191 (25%), Gaps = 54/191 (28%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEP------------------------------ 196
+VVG G G + V++V
Sbjct: 7 LVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSE 66
Query: 197 ----------------WCMPRLFTADIAAFYEGYYANKGIKIIKGT----VAVGFTTNAD 236
+ EG ++I+KG A
Sbjct: 67 EMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNG 126
Query: 237 GEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----GQVAENKGGIETDDFFKTSADDV 292
+ K+ + VG RP G N+G IE D +TS ++
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186
Query: 293 YAVGDVATFPM 303
+A+GD+ P
Sbjct: 187 FAIGDIVPGPA 197
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (98), Expect = 7e-05
Identities = 22/229 (9%), Positives = 48/229 (20%), Gaps = 29/229 (12%)
Query: 105 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164
L + ++ + + L ++ + N+ D + K
Sbjct: 110 FLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEV 169
Query: 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224
V + + + + + K
Sbjct: 170 TVAGVVTNWTLVTQAHGTQCC---------------------MDPNVIELAGYKNDGTRD 208
Query: 225 GTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGG-IETDD 283
+ G + G +V + + KG + +
Sbjct: 209 LSQKHGVILSTTGHDGP------FGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHS 262
Query: 284 FFKTSADDVYAVGDVATFPMKLYREMRRVEH-VDHARKSAEQAVKTIMA 331
D++Y G L R +AEQ +K A
Sbjct: 263 GAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFAA 311
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 30/166 (18%), Positives = 47/166 (28%), Gaps = 23/166 (13%)
Query: 162 KNGKAVVVGGGYIGLE-----LSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216
N + +VG G A LK + M T D+ F
Sbjct: 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63
Query: 217 NKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR-----------TLEADIVVVGVGGR--- 262
G+++ + V D + AD V++ +G
Sbjct: 64 ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKG 123
Query: 263 --PLISLFKGQVAENKGG-IETD-DFFKTSADDVYAVGDVATFPMK 304
P G V + G + T +TS V+A GDV +
Sbjct: 124 HEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 39.4 bits (92), Expect = 9e-05
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 341 YDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGV 394
+ P+F+S +++ + G + G ++ G F ++++ +V+ V
Sbjct: 4 DEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAV 55
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 265 ISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
+ L V GG++ D++ +T+ ++YA+GDV M +
Sbjct: 176 LQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAIN 221
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 23/200 (11%), Positives = 57/200 (28%), Gaps = 27/200 (13%)
Query: 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTA 61
+ +I+G G S AAR + G +
Sbjct: 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDT-------------------AEKIGG 86
Query: 62 RLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIA 121
L G G ++ + + +L+ + + + K + + L + ++IA
Sbjct: 87 HLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIA 146
Query: 122 TGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAA 181
TG++ L + ++ I ++ + G ++
Sbjct: 147 TGASECTLWNELKARESEWAENDIKGIYLIGD--------AEAPRLIADATFTGHRVARE 198
Query: 182 LKINNIDVSMVYPEPWCMPR 201
++ N +++ Y
Sbjct: 199 IEEANPQIAIPYKRETIAWG 218
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 13/110 (11%)
Query: 214 YYANKGIKIIKGT-VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL-------- 264
+ +G+ +G T E + TL+ + +++ G P
Sbjct: 113 FADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPR 172
Query: 265 ---ISLFKGQVAENKGG-IETDDFFKTSADDVYAVGDVATFPMKLYREMR 310
+ L K V K G I+ D + KT+ D++YA+GDV M +
Sbjct: 173 SQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAIN 222
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 270 GQVAENKGGIETDDFFKTSADDVYAVGDVATFPM 303
G ++G IE D +T+ +YA+GD+ PM
Sbjct: 172 GVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM 205
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 40.2 bits (93), Expect = 2e-04
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
+ +V + +++ EG + + +KG G + +
Sbjct: 72 VKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY---GKFVSPSEISVDTI 128
Query: 244 LKDGRTLEADIVVVGVGGRPL--------ISLFKGQVA-ENKGGIETDDFFKTSADDVYA 294
+ ++ +++ G ++L K V + G I ++ F T+ VYA
Sbjct: 129 EGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYA 188
Query: 295 VGDVATFPM 303
+GDV PM
Sbjct: 189 IGDVIPGPM 197
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
+ D +T A +YA GD
Sbjct: 180 RGNYLTVDRVSRTLATGIYAAGDCTGLLP 208
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.4 bits (90), Expect = 6e-04
Identities = 32/327 (9%), Positives = 81/327 (24%), Gaps = 36/327 (11%)
Query: 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKP----------GELAIISKEAVAPYERPAL 50
M E+ + ++LG G++ + + G K GE + I+ L
Sbjct: 3 MDEE-YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLL 61
Query: 51 SKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELIL------STEIVRADIASKT 104
+ L + + L + + + K
Sbjct: 62 EGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKV 121
Query: 105 LLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNG 164
+ T + + + L + F + + K
Sbjct: 122 PSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQ 181
Query: 165 KAVVVGGGYIGLELSA------------ALKINNIDVSMVYPEPWCMPRLFTADIAAFYE 212
+ G + L + +K+ + ++ P+ P ++ +
Sbjct: 182 DVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFA 241
Query: 213 GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP----LISLF 268
A G + + +G ++ P +
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM--ENGKVVGVKSEGEVARCKQLICDPSYVPDRVPIDDGS 299
Query: 269 KGQVAENKGGIETDDFFKTSADDVYAV 295
+ QV + + F+T+ +D+ +
Sbjct: 300 ESQVFCSC-SYDATTHFETTCNDIKDI 325
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 37.8 bits (86), Expect = 0.001
Identities = 23/154 (14%), Positives = 36/154 (23%), Gaps = 16/154 (10%)
Query: 167 VVVGGGYIGLELSAALKINNIDVSMVYPEP----------WCMPRLFTADIAAFYEGY-- 214
++VG G G + I ++ + +
Sbjct: 5 LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKV 64
Query: 215 ----YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG 270
Y I + + E + IV G L
Sbjct: 65 HVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGA 124
Query: 271 QVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304
G I D +T+ V+A GD T P K
Sbjct: 125 VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 38.1 bits (87), Expect = 0.001
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 14/131 (10%)
Query: 184 INNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243
I+ +V++ P ++ G+ + +G + + +
Sbjct: 78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGS 137
Query: 244 LKDGRTLEADIVVVGVGGRP-----------LISLFKGQVAENKGGIETDDFFKTSADDV 292
+ L+ + V++ G +P L++ G + +G I DD+ TS V
Sbjct: 138 ---SQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGV 194
Query: 293 YAVGDVATFPM 303
YA+GDV M
Sbjct: 195 YAIGDVVRGAM 205
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 0.001
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 276 KGGIETDDFFKTSADDVYAVGDVATFPM 303
KG I D+F T+ +YAVGDV +
Sbjct: 168 KGHIIVDEFQNTNVKGIYAVGDVCGKAL 195
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.8 bits (86), Expect = 0.001
Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 16/197 (8%)
Query: 161 KKNGKAVVVGGGYIGLELSAALKINNIDVSMVY---PEPWCMPRLFTADIAAFYEGYYAN 217
+ K ++G G + ++ L ++ + Y+
Sbjct: 2 AYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFE 61
Query: 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQ-----V 272
+ + V + + + +A + +G+ K
Sbjct: 62 IEL-MKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKF 120
Query: 273 AENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332
+ +TS V+A GD+ VE V+ ++++ K I A
Sbjct: 121 NRWDLPEVDPETMQTSEPWVFAGGDIVGMA------NTTVESVNDGKQASWYIHKYIQA- 173
Query: 333 EGGKTVTGYDYLPYFYS 349
+ G +V+ LP FY+
Sbjct: 174 QYGASVSAKPELPLFYT 190
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (84), Expect = 0.003
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 277 GGIETDDFFKTSADDVYAVGDVATFPMKL 305
G I D +T+ +YA+GD+ ++L
Sbjct: 183 GKIPVTDEEQTNVPYIYAIGDILEGKLEL 211
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.4 bits (83), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 275 NKGGIETDDFFKTSADDVYAVGDVATFPM 303
+G + DD F + + VGDV PM
Sbjct: 181 KRGRLVIDDQFNSKFPHIKVVGDVTFGPM 209
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 434 | |||
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.91 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.89 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.88 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.88 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.87 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.87 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.86 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.83 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.8 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.8 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.8 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.79 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.79 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.78 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.77 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.76 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.76 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.75 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.75 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.75 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.74 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.74 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.74 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.74 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.72 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.71 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.71 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.7 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.69 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.69 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.69 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.69 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.68 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.67 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.65 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.61 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.61 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.59 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.56 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.53 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.53 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.5 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.5 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.49 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.48 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.47 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.41 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.37 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.32 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.32 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.27 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.27 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.26 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.25 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.25 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.24 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 99.24 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.24 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.23 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.23 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.23 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.23 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.2 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.18 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.16 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.15 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.14 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.12 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 99.09 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.08 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.07 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.05 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.05 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 99.03 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 99.02 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.01 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.01 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.01 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.0 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.99 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.96 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.96 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.95 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.94 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.94 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.94 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.93 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.93 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.93 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.91 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.91 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.91 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.9 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.89 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.86 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.85 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.85 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.85 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.84 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.84 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.84 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.84 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.82 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.81 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.8 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.78 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.78 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.78 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.78 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.78 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.76 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.75 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.75 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.74 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.74 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.74 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.73 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.72 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.7 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.67 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.66 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.63 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.6 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.58 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.58 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.57 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.55 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.53 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.5 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.44 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.44 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.38 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.34 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.33 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.32 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.29 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.29 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.27 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.26 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.26 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.25 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.25 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.17 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.13 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 98.12 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.06 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.06 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.03 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.01 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.99 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.98 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.94 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.94 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.91 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.87 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.81 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.79 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.74 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.73 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.67 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.67 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.6 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.48 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.47 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.45 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 97.45 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.43 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.35 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 97.33 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.26 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.26 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.24 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.23 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 97.2 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 97.13 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.04 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.04 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.94 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 96.91 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.65 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.62 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 96.56 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.51 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.39 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.33 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.32 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.28 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.27 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.2 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.05 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.99 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.88 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.83 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.82 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.76 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.67 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.59 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.58 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 95.54 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.47 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 95.39 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.36 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.35 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.33 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 95.33 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.32 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 95.31 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.28 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.1 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.95 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.81 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.64 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.58 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.41 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.41 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.37 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.37 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.25 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 94.22 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.15 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 94.15 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 94.13 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.02 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 93.94 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.94 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.84 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 93.67 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.64 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.55 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.49 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 93.49 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.26 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 93.17 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 93.17 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 93.16 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 93.13 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.12 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.08 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 93.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.01 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 92.98 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 92.9 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.65 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.58 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 92.52 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.49 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 92.37 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.15 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 92.09 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 92.07 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 92.04 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.97 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.73 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.71 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.61 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 91.6 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.53 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.51 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.34 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 91.33 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.26 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 90.73 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.66 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.57 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 90.55 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 90.54 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 90.44 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.13 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.12 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.96 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 89.93 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 89.9 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 89.76 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.74 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 89.23 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.05 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.02 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 88.85 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 88.83 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 88.79 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 88.62 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 88.62 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 88.56 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 88.23 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 88.14 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.01 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 87.99 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 87.94 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 87.91 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.91 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 87.88 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 87.79 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 87.75 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.7 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 87.68 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 87.46 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 87.42 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 87.37 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.28 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 87.09 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.94 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 86.77 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 86.71 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 86.64 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 86.56 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 86.28 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 86.17 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 86.15 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 86.02 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 86.01 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 85.72 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.59 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 85.31 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 85.18 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 85.06 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.03 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.03 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 84.89 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 84.78 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 84.76 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.71 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 84.03 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 83.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.93 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.77 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 83.66 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 83.5 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 83.43 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.39 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 83.33 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 82.96 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 82.83 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 82.42 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 82.41 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 81.85 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 81.59 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.35 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.35 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 81.31 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 81.25 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 81.23 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 81.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.18 | |
| d1xhca3 | 62 | NADH oxidase /nitrite reductase {Pyrococcus furios | 81.15 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 81.12 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.03 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 80.96 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 80.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 80.55 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 80.23 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 80.2 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 80.16 |
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.91 E-value=1.9e-24 Score=182.13 Aligned_cols=163 Identities=22% Similarity=0.303 Sum_probs=129.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHH----------HHHHhcCcEEEcCCeEEEEEe
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYE----------GYYANKGIKIIKGTVAVGFTT 233 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~----------~~l~~~GV~~~~~~~v~~i~~ 233 (434)
.+|+|||+|++|+|+|..|++.|.+++++...++..+.+..+.+...+. +.....+|+++++.+++++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~ 83 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP 83 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence 5699999999999999999999988877766665554322222222221 233456899999999999976
Q ss_pred cCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc------cccccCCcEEeCCCCCCCCCcEEEecccccccccccC
Q 013914 234 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG------QVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYR 307 (434)
Q Consensus 234 ~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~------~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~ 307 (434)
+.. .+.+.+|+++++|.+++|+|.+|++.+.+. ++. .+++|.||+++||+.|+|||+|||+..++...+
T Consensus 84 --~~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~-~~~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~g 158 (183)
T d1d7ya1 84 --QAH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA-CDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSG 158 (183)
T ss_dssp --TTT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC-BSSSEECCTTCBCSSTTEEECGGGEEEECTTTC
T ss_pred --ccc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe-eCCcEEeccceeccccccchhhhhhccceeeCC
Confidence 332 467899999999999999999998654432 232 356799999999999999999999998888778
Q ss_pred cceecccHHHHHHHHHHHHHHHhc
Q 013914 308 EMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 308 ~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
...+.+++..|..||+.||+||+.
T Consensus 159 ~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 159 RFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp SEEECCCHHHHHHHHHHHHHHHHC
T ss_pred ceechhHHHHHHHHHHHHHHHHcC
Confidence 777788999999999999999974
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.7e-24 Score=185.11 Aligned_cols=113 Identities=27% Similarity=0.419 Sum_probs=93.4
Q ss_pred HHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh-hhhh-ccccc--cCCcEEeCCCCCCCCC
Q 013914 215 YANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI-SLFK-GQVAE--NKGGIETDDFFKTSAD 290 (434)
Q Consensus 215 l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~-~~~~-~~~~~--~~g~i~vd~~~~t~~~ 290 (434)
+++.||+++++++|++|+. +. ..|++++|+++++|.+|+|+|..|+. ++.. .++.. ..++|.||++|||+ |
T Consensus 93 ~~~~gI~~~~g~~V~~id~--~~--~~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~-~ 167 (213)
T d1m6ia1 93 IENGGVAVLTGKKVVQLDV--RD--NMVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-S 167 (213)
T ss_dssp STTCEEEEEETCCEEEEEG--GG--TEEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE-T
T ss_pred HHHCCeEEEeCCEEEEeec--cC--ceeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC-C
Confidence 4678999999999999976 22 25889999999999999999966554 4443 35554 45899999999997 9
Q ss_pred cEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 291 DVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 291 ~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+|||+|||+..+....+. .+++++..|+.||+.||+||++..
T Consensus 168 ~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~~ 209 (213)
T d1m6ia1 168 NIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGAA 209 (213)
T ss_dssp TEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred ceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCCC
Confidence 999999999988775554 467899999999999999999864
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.88 E-value=2.7e-22 Score=170.89 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=128.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCCccCCH--------------HHHHHHHHHHHhcCcEEEcCCeE
Q 013914 165 KAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMPRLFTA--------------DIAAFYEGYYANKGIKIIKGTVA 228 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~~~~~~--------------~~~~~~~~~l~~~GV~~~~~~~v 228 (434)
+|+|||+|++|+|+|..|++. +.+|+++++.+.+.. .+. .+.....+.++++||++++++.|
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V 79 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF--LSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB--CGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc--cccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeece
Confidence 699999999999999999987 468999998765421 111 11122345788999999999999
Q ss_pred EEEEecCCCcEEEEE-eCCCc--EEECCEEEEcccCc--------cChhhhhccccc-cCCcEEeCCCCCCCCCcEEEec
Q 013914 229 VGFTTNADGEVKEVK-LKDGR--TLEADIVVVGVGGR--------PLISLFKGQVAE-NKGGIETDDFFKTSADDVYAVG 296 (434)
Q Consensus 229 ~~i~~~~~g~v~~v~-~~~g~--~~~~D~vi~a~G~~--------p~~~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~G 296 (434)
++++.+ ++. ..+. +.+|+ ++++|.+++|+|.. |++.++..++.+ ++|+|.||+++||+.|+|||+|
T Consensus 80 ~~i~~~-~~~-v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T~~~~IyA~G 157 (198)
T d1nhpa1 80 TAIQPK-EHQ-VTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVG 157 (198)
T ss_dssp EEEETT-TTE-EEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECG
T ss_pred eeEeec-ccc-ceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCCcccccccceEEec
Confidence 999872 332 3333 45554 57899999999865 456666666665 7899999999999999999999
Q ss_pred ccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 297 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
||+..+....+...+.+++..|.++|+.||+||.+..
T Consensus 158 D~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~ 194 (198)
T d1nhpa1 158 DATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPV 194 (198)
T ss_dssp GGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCC
T ss_pred ceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCC
Confidence 9999877666666677889999999999999997653
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=3.5e-22 Score=168.37 Aligned_cols=167 Identities=26% Similarity=0.391 Sum_probs=130.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC--------------CHHHHHHHHHHHHhcCcEEEcCCe
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF--------------TADIAAFYEGYYANKGIKIIKGTV 227 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~--------------~~~~~~~~~~~l~~~GV~~~~~~~ 227 (434)
..++|+|||+|++|+|+|..|++.|.+++++...+....... ...............++.+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 367999999999999999999999998888766654322111 111122224456777888888888
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc---ChhhhhccccccCCcEEeCCCCCCCCCcEEEeccccccccc
Q 013914 228 AVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP---LISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 228 v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p---~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~ 304 (434)
+..+.. +. ..+.+.++.++++|.+++++|.+| +..+++......++++.||+++||++|+|||+|||+..+..
T Consensus 82 ~~~~~~--~~--~~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ts~~~vya~GD~~~~~~~ 157 (185)
T d1q1ra1 82 VTAINR--DR--QQVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQ 157 (185)
T ss_dssp EEEEET--TT--TEEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSBCSSTTEEECGGGEEEEET
T ss_pred eeeecc--cc--cEEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccccchhhhhcchhhhccccc
Confidence 888765 22 257788889999999999999776 44554443333568899999999999999999999999888
Q ss_pred ccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 305 LYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 305 ~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
..+.+.+++++..|.+||+.||+||+|+
T Consensus 158 ~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 158 LYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp TTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred cCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 8888888899999999999999999873
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.87 E-value=1.3e-21 Score=151.15 Aligned_cols=118 Identities=35% Similarity=0.608 Sum_probs=108.9
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
+||.+. +++++++++|+.++++.++ .+++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++++++.+.+
T Consensus 4 ipG~~~-~v~~lrtl~Da~~l~~~~~--~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 4 LQGATM-PVHTLRTLEDARRIQAGLR--PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp GTTCSS-CEEECCSHHHHHHHHHHCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred CCCCCC-CEEEeCCHHHHHHHHHhhh--cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 688774 4999999999999998886 4789999999999999999999999999999999999988799999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
.++++||++++++.++++.. + .+.++||++++||+|++|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence 99999999999999998864 3 57889999999999999998
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.87 E-value=1.7e-21 Score=161.20 Aligned_cols=153 Identities=25% Similarity=0.334 Sum_probs=118.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHH-------------HHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIA-------------AFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~-------------~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
|++|||+|++|+|+|..|++ +.+|+++++.+.+.. .++.+. ....+.+++.++++++++.++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 78 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLI 78 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEE
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccc
Confidence 79999999999999999975 679999988765422 122221 22245678889999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCccee
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRR 311 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~ 311 (434)
+. +.. +.+.+++++++|.+++|+|..|+......++... ++|.||+++||+.|+|||+|||+..+.. .
T Consensus 79 ~~--~~~---~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~------~ 146 (167)
T d1xhca1 79 DR--GRK---VVITEKGEVPYDTLVLATGAPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGI------I 146 (167)
T ss_dssp ET--TTT---EEEESSCEEECSEEEECCCEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTB------C
T ss_pred cc--ccc---cccccccccccceeEEEEEecCCchhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCe------E
Confidence 75 332 3455677899999999999987654334566554 4599999999999999999999986543 2
Q ss_pred cccHHHHHHHHHHHHHHHhcc
Q 013914 312 VEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 312 ~~~~~~A~~~g~~aa~~i~~~ 332 (434)
++.+..|.++|+.+|+||+++
T Consensus 147 ~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 147 AGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp CCSHHHHHHHHHHHHHHHTTC
T ss_pred EChHHHHHHHHHHHHHHcCCC
Confidence 257888999999999999863
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.86 E-value=4e-21 Score=149.11 Aligned_cols=123 Identities=26% Similarity=0.392 Sum_probs=112.2
Q ss_pred CCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHH
Q 013914 134 VEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEG 213 (434)
Q Consensus 134 ~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~ 213 (434)
+||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|++.|.+||++++.++++++.+++++.+.+.+
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~ 80 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE 80 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence 47888899999999999999999988767899999999999999999999999999999999999998889999999999
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~ 259 (434)
.++++||++++++.+++++. ++.+..+ +.+|++++||.|++|+
T Consensus 81 ~l~~~gv~~~~~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 81 EMEANNITIATGETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHTTTEEEEESCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred HhhcCCeEEEeCceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence 99999999999999999986 4554444 6788899999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=9.8e-20 Score=143.16 Aligned_cols=120 Identities=34% Similarity=0.617 Sum_probs=110.6
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
.++++++++++++.++++.+. .+++++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++++.+.+.+.++++
T Consensus 13 ~~~v~~lr~~~d~~~l~~~~~--~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~ 90 (133)
T d1q1ra2 13 ANNFRYLRTLEDAECIRRQLI--ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREA 90 (133)
T ss_dssp STTEEESSSHHHHHHHHHTCC--TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCeeEeCCHHHHHHHHHhhc--cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccc
Confidence 467999999999999988775 478999999999999999999999999999999999999888999999999999999
Q ss_pred CcEEEcCCeEEEEEecC-CCcEEEEEeCCCcEEECCEEEEccc
Q 013914 219 GIKIIKGTVAVGFTTNA-DGEVKEVKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~-~g~v~~v~~~~g~~~~~D~vi~a~G 260 (434)
||++++++.+++++... ++.+..+.+++|+++++|.||+|+|
T Consensus 91 GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 91 GVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp TCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred ccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 99999999999998743 4577789999999999999999998
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.2e-20 Score=163.69 Aligned_cols=55 Identities=25% Similarity=0.339 Sum_probs=46.5
Q ss_pred hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 ~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.++.+ ++|+|.||+++|||.|+|||+|||++.+ .+...|..+|+.||+++++..
T Consensus 160 ~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 160 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKA----------LLTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp GTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSS----------CCHHHHHHHHHHHHHHHHSCC
T ss_pred hcCcEECCCccEEeCCCccccCCcEEEEEEccCCc----------CcHHHHHHHHHHHHHHHcCCC
Confidence 345666 6799999999999999999999998754 346678899999999999865
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=6e-20 Score=160.21 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=80.7
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEe-cCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhh------------hccccc
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTT-NADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLF------------KGQVAE 274 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~-~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~------------~~~~~~ 274 (434)
.+...++..||+++.+.....-.. ........+...+|+ ++++|.+++|+|.+|..... ..++.+
T Consensus 99 ~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~~~~~~~~~~l~l~~~gv~~ 178 (233)
T d1xdia1 99 DITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQL 178 (233)
T ss_dssp HHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCGGCEEECCSSSCTTTTTCCC
T ss_pred ceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCcccccccccccccccccccchhhhcc
Confidence 345667888999887642111000 001122355566764 68999999999988864322 334556
Q ss_pred -cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 275 -NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 275 -~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
++|+|.||++|||+.|+|||+|||++.+ .+...|..+|+.||.|+++.
T Consensus 179 ~~~G~I~vd~~~~T~~~gIyA~GDv~~~~----------~l~~~A~~~g~~aa~~~~g~ 227 (233)
T d1xdia1 179 GRGNYLTVDRVSRTLATGIYAAGDCTGLL----------PLASVAAMQGRIAMYHALGE 227 (233)
T ss_dssp BTTTBCCCCSSSBCSSTTEEECSGGGTSC----------SCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCcCCcCCCcccCCCCEEEEEEeCCCc----------hhHHHHHHHHHHHHHHHcCC
Confidence 5788999999999999999999998764 35667889999999999975
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=3.8e-19 Score=136.40 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=90.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++.++++...+++.+ .
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~-~ 97 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-T 97 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCE-E
T ss_pred CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEE-E
Confidence 5799999999999999999999999999999999999986 8999999999999999999999999999988555554 6
Q ss_pred EEeCCCcEEECCEEEEccc
Q 013914 242 VKLKDGRTLEADIVVVGVG 260 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G 260 (434)
+++++|+++++|.|++|+|
T Consensus 98 v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 98 LELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEETTSCEEEESEEEECSC
T ss_pred EEECCCCEEEcCEEEEecC
Confidence 8899999999999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.79 E-value=2.2e-19 Score=139.20 Aligned_cols=121 Identities=23% Similarity=0.477 Sum_probs=106.5
Q ss_pred CcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCC
Q 013914 125 TVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFT 204 (434)
Q Consensus 125 ~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~ 204 (434)
+|+.|+ +||. .++++++++.++.++.+.+.. +++++|||+|++|+|+|..|.+.|.+||++++.+++++ ++
T Consensus 1 R~r~p~---ipG~--e~~~t~~~~~d~~~l~~~~~~--~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d 71 (122)
T d1xhca2 1 RAREPQ---IKGK--EYLLTLRTIFDADRIKESIEN--SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LD 71 (122)
T ss_dssp EECCCC---SBTG--GGEECCCSHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CC
T ss_pred CCCCcC---CCCc--cceEccCCHHHHHHHHHHhhc--CCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CC
Confidence 356666 6775 468999999999999998874 68999999999999999999999999999999999886 79
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+++.+.+.+.++++||++++++.+.+++. ++ + +.+++.+++|.|++|+|.
T Consensus 72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~----v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 72 EELSNMIKDMLEETGVKFFLNSELLEANE--EG----V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHHHHHHHHTTEEEECSCCEEEECS--SE----E-EETTEEEECSCEEEECCE
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEEEEeC--CE----E-EeCCCEEECCEEEEEEEe
Confidence 99999999999999999999999999864 32 2 457779999999999995
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=4.9e-19 Score=154.79 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=42.5
Q ss_pred CCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 276 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.|+|.||++||||+|+|||+|||...+. .+...|..+|+.||++|++..
T Consensus 182 ~g~I~vd~~~~TsvpgIyA~GDv~~g~~---------~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 182 TGKIPVTDEEQTNVPYIYAIGDILEGKL---------ELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp SCCBCCCTTSBCSSTTEEECGGGBTTSC---------CCHHHHHHHHHHHHHHHHHCC
T ss_pred cCccccCCccccCCCCEEEEEeccCCCc---------ccHHHHHHHHHHHHHHHcCCC
Confidence 5889999999999999999999986543 356678999999999999864
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-18 Score=136.08 Aligned_cols=118 Identities=25% Similarity=0.434 Sum_probs=106.7
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHh----CCCeEEEEccCCccCCccCCHHHHHHHHHHH
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKI----NNIDVSMVYPEPWCMPRLFTADIAAFYEGYY 215 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~----~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l 215 (434)
++++.+++++++.++.+.++. +++++|||+|++|+|+|..|.+ .|.+|+++++.++++++.+++++.+.+.+.+
T Consensus 16 ~~~~~~r~~~d~~~l~~~~~~--~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l 93 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKISRE--VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKV 93 (137)
T ss_dssp HTEEECCSHHHHHHHHHHHHH--CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHhhc--CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHH
Confidence 568889999999999988874 7899999999999999999864 6899999999999998889999999999999
Q ss_pred HhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 216 ANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
+++||++++++.|++++.+ ++ ...+++++|++++||.|++|+|.
T Consensus 94 ~~~GV~~~~~~~V~~i~~~-~~-~~~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 94 RREGVKVMPNAIVQSVGVS-SG-KLLIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp HTTTCEEECSCCEEEEEEE-TT-EEEEEETTSCEEEESEEEECCCE
T ss_pred HhCCcEEEeCCEEEEEEec-CC-EEEEEECCCCEEECCEEEEeecC
Confidence 9999999999999999873 33 35799999999999999999993
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.77 E-value=1.9e-18 Score=149.62 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=113.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc------------------------------C----CccCCH----
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC------------------------------M----PRLFTA---- 205 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~------------------------------~----~~~~~~---- 205 (434)
..++|||+|+.|+++|..+++.|.+|+++++...- . ...+..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 36899999999999999999999999999865310 0 000111
Q ss_pred --------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcc--------cCccChhhh-
Q 013914 206 --------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGV--------GGRPLISLF- 268 (434)
Q Consensus 206 --------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~--------G~~p~~~~~- 268 (434)
.+.+.+...++..+|+++.+. ..+.. ..........++.++.++.+++|+ |++||++.+
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l~ 159 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELG 159 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSSS
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCCC
Confidence 123344456777899998774 23433 222222223334578899999984 889998854
Q ss_pred --hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 --~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.++.+ ++|+|.||+++|||.|+|||+|||++.+ ..+..|..+|+.||++|++..
T Consensus 160 l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~----------~~~~~A~~~g~~aa~~i~g~~ 217 (223)
T d1ebda1 160 LEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGP----------ALAHKASYEGKVAAEAIAGHP 217 (223)
T ss_dssp TTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHTSCC
T ss_pred hHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence 446777 6899999999999999999999999865 356778899999999999753
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=1.9e-18 Score=133.47 Aligned_cols=96 Identities=23% Similarity=0.392 Sum_probs=87.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+++.++++||++++++++++++..+++....
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~ 100 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVE 100 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEE
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEE
Confidence 5899999999999999999999999999999999999987 899999999999999999999999999999877777767
Q ss_pred EEeCCC-----cEEECCEEEEc
Q 013914 242 VKLKDG-----RTLEADIVVVG 258 (434)
Q Consensus 242 v~~~~g-----~~~~~D~vi~a 258 (434)
+++.++ +++++|.|++|
T Consensus 101 ~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 101 IVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEEETTTTEEEEEEESEEEEC
T ss_pred EEEEeCCCCCeEEEEeCEEEEC
Confidence 776554 37999999986
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.76 E-value=4.1e-18 Score=131.06 Aligned_cols=112 Identities=25% Similarity=0.335 Sum_probs=93.6
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
+.+.+++..+..+... .|++++|||+|++|+|+|..|++.|++|+++++.+++++. +++++.+.+++.+++
T Consensus 5 d~~~v~~s~~~l~l~~--------~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~ 75 (119)
T d3lada2 5 DQDVIVDSTGALDFQN--------VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTK 75 (119)
T ss_dssp CSSSEEEHHHHTSCSS--------CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHH
T ss_pred CCCEEEchhHhhCccc--------CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHh
Confidence 4466775443332221 5899999999999999999999999999999999999986 899999999999999
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCCC---cEEECCEEEEccc
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKDG---RTLEADIVVVGVG 260 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g---~~~~~D~vi~a~G 260 (434)
+||++++++++++++..+++ ..+++.++ ++++||.|++|+|
T Consensus 76 ~Gv~i~~~~~v~~i~~~~~~--v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 76 QGLKILLGARVTGTEVKNKQ--VTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp TTEEEEETCEEEEEEECSSC--EEEEEESSSEEEEEEESEEEECSC
T ss_pred cCceeecCcEEEEEEEeCCE--EEEEEEECCCCEEEECCEEEEeeC
Confidence 99999999999999985555 34555443 5799999999998
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.75 E-value=3.2e-18 Score=151.82 Aligned_cols=152 Identities=23% Similarity=0.272 Sum_probs=107.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------cCCH-H
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-------------------------------------LFTA-D 206 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-------------------------------------~~~~-~ 206 (434)
.++|||+|+.|+++|..+++.|.+|+++++.+.+... ..+. .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 5999999999999999999999999999987654210 0000 0
Q ss_pred HHHH------------HHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh-----
Q 013914 207 IAAF------------YEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK----- 269 (434)
Q Consensus 207 ~~~~------------~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~----- 269 (434)
.... ..+.....++....+.... +.. +. .+. .+|++++||.+++|+|.+|++..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~d--~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~~ 196 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAK-VID--NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPRS 196 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCE-EEE--TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEECC
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEE-Eee--ec---ccc-cccceEeeeeeeeccCCCCCcCcccccccc
Confidence 1100 1112233344433333222 221 11 122 3577899999999999999876442
Q ss_pred ------ccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 270 ------GQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 270 ------~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.++.. ++|+|.||++|||++|+|||+|||++.+ .++..|..+|+.||.||++..
T Consensus 197 ~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~----------~l~~~A~~~G~~aa~~i~G~k 257 (261)
T d1mo9a1 197 AELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP----------MEMFKARKSGCYAARNVMGEK 257 (261)
T ss_dssp HHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSS----------CSHHHHHHHHHHHHHHHTTCC
T ss_pred cccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHHHHCCCC
Confidence 24666 6899999999999999999999998765 356778999999999999864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.75 E-value=6.7e-18 Score=129.14 Aligned_cols=96 Identities=26% Similarity=0.357 Sum_probs=88.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|||+|++|+|+|..|++.|.+||++++.+++++. +++++++.+.+.++++||++++++.+++++..+++. ..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~-~~ 98 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LS 98 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EE
T ss_pred CCCEEEEECCchHHHHHHHHHHhccccceeeehhcccccc-ccHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCe-EE
Confidence 4799999999999999999999999999999999999976 799999999999999999999999999998766665 47
Q ss_pred EEeCCCcEEE-CCEEEEcc
Q 013914 242 VKLKDGRTLE-ADIVVVGV 259 (434)
Q Consensus 242 v~~~~g~~~~-~D~vi~a~ 259 (434)
+++++|+.++ +|.|++|+
T Consensus 99 v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 99 IHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEETTSCEEEEESEEEECC
T ss_pred EEECCCCEEEeCCEEEEeC
Confidence 8999998875 79999985
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.75 E-value=1.8e-18 Score=133.80 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..++++|.+||++++.+++++. +|+++.+.+.+.++++||++++++++++++..+++....
T Consensus 25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~ 103 (125)
T d1ojta2 25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVT 103 (125)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEE
Confidence 5899999999999999999999999999999999999986 799999999999999999999999999999866664434
Q ss_pred EEeCCC--cEEECCEEEEcccC
Q 013914 242 VKLKDG--RTLEADIVVVGVGG 261 (434)
Q Consensus 242 v~~~~g--~~~~~D~vi~a~G~ 261 (434)
++..+| +++++|.|++|+|+
T Consensus 104 ~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 104 FEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EESSSCCSSCEEESCEEECCCE
T ss_pred EEeCCCCeEEEEcCEEEEecCC
Confidence 444444 47999999999995
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.74 E-value=1.6e-17 Score=128.78 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=98.1
Q ss_pred CCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHH
Q 013914 137 ADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYA 216 (434)
Q Consensus 137 ~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~ 216 (434)
.+.+++|...++. +.+...++++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.++
T Consensus 2 ~~~~gv~~~~~~~------~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~-~d~~~~~~~~~~l~ 74 (121)
T d1mo9a2 2 VNAKGVFDHATLV------EELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDRMK 74 (121)
T ss_dssp TTSBTEEEHHHHH------HHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHHHH
T ss_pred CCCCCEEeHHHHH------HHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcc-cccchhhhhhhhhh
Confidence 4557787554433 3344446799999999999999999999999999999999999975 89999999999999
Q ss_pred hcCcEEEcCCeEEEEEecCCCcEEEEE---eCCCcEEECCEEEEccc
Q 013914 217 NKGIKIIKGTVAVGFTTNADGEVKEVK---LKDGRTLEADIVVVGVG 260 (434)
Q Consensus 217 ~~GV~~~~~~~v~~i~~~~~g~v~~v~---~~~g~~~~~D~vi~a~G 260 (434)
++||++++++.+++++.++++.+..+. ..++++++||.|++|+|
T Consensus 75 ~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 75 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred ccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 999999999999999987777654443 34456899999999998
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.74 E-value=3.2e-18 Score=148.80 Aligned_cols=111 Identities=24% Similarity=0.356 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChh---------hh-hccccc-
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLIS---------LF-KGQVAE- 274 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~---------~~-~~~~~~- 274 (434)
...+...++..||+++.+..... +.........++ ..+.++.+++++|.+|... ++ +.++.+
T Consensus 102 ~~~~~~~~~~~gV~vi~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~~~~~~~~~~~~~~~gv~l~ 176 (229)
T d3lada1 102 TGGVASLIKANGVTLFEGHGKLL-----AGKKVEVTAADGSSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLD 176 (229)
T ss_dssp HHHHHHHHHHHTCEEEESEEEEC-----STTCEEEECTTSCEEEECCSCEEECCCEEECCCTEEECCTTCCSSCCSCCBC
T ss_pred hhhHHHHhhcCCeEEEEeEEccc-----ccceeeccccCccceeeecccccccCCcccccccccccccccchHhcCeeec
Confidence 34556677888999987643221 111123333333 3577999999999877542 11 345666
Q ss_pred cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 275 NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 275 ~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++|+|.||+++||+.|+|||+|||...+ .+...|..+|+.||++|++..
T Consensus 177 ~~G~i~vd~~~~T~vpgiyA~GDv~~g~----------~l~~~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 177 ERGFIYVDDYCATSVPGVYAIGDVVRGA----------MLAHKASEEGVVVAERIAGHK 225 (229)
T ss_dssp TTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCcEEecccccCCCCCEEEEeCCcchH----------HHHHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999998765 346678889999999999864
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.74 E-value=1.3e-17 Score=128.15 Aligned_cols=98 Identities=23% Similarity=0.444 Sum_probs=89.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKIN---NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~---g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|++++|||+|++|+|+|..+.++ |.+|+++++.+++++. +++++.+.+.+.++++||++++++.+++++..+++.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~ 95 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRG-FDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT 95 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccccc-ccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence 479999999999999999887654 8899999999999986 899999999999999999999999999998755554
Q ss_pred EEEEEeCCCcEEECCEEEEcccC
Q 013914 239 VKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 239 v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
..+.+++|++++||.|++|+|+
T Consensus 96 -~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 96 -RHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp -EEEEETTSCEEEESEEEECSCE
T ss_pred -EEEEECCCCEEEcCEEEEecCC
Confidence 5789999999999999999995
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.74 E-value=1.1e-17 Score=144.51 Aligned_cols=156 Identities=18% Similarity=0.257 Sum_probs=113.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc------------------------------------CC----
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL------------------------------------FT---- 204 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~------------------------------------~~---- 204 (434)
-++|||+|+.|+++|..+++.|.+|+++++.+.+.... ..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 68999999999999999999999999999876542100 00
Q ss_pred --------HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEccc-----CccChhhh---
Q 013914 205 --------ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVG-----GRPLISLF--- 268 (434)
Q Consensus 205 --------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G-----~~p~~~~~--- 268 (434)
..+.+.+...+++.+|+++.... .+.. +..........+...+.+|.||+||| +.|+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~--~~~~-~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l~l~ 161 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYG--KFVS-PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLD 161 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCE--EEEE-TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTSCCT
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEecc--cccc-ccccccccccccccccccceEEEeECCCccCccccCCCCChH
Confidence 11234455567788898876542 2221 11111111223345789999999998 57888755
Q ss_pred hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 ~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+.++.+ ++|+|.||+++||++|+|||+|||...+ .++..|..+|+.||++|++..
T Consensus 162 ~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~----------~l~~~A~~~g~~aa~~i~g~~ 217 (221)
T d1dxla1 162 KIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP----------MLAHKAEEDGVACVEYLAGKV 217 (221)
T ss_dssp TTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSC----------CCHHHHHHHHHHHHHHHTTSC
T ss_pred hcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCc----------ccHHHHHHHHHHHHHHHcCCC
Confidence 346777 7899999999999999999999999765 357778899999999998764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.72 E-value=1.1e-17 Score=129.36 Aligned_cols=97 Identities=31% Similarity=0.444 Sum_probs=86.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++.+.+.+.++++||++++++++.+++..+++....
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~ 102 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT-MDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT 102 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch-hhhcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence 5899999999999999999999999999999999999986 899999999999999999999999999999866665555
Q ss_pred EEeCCC---cEEECCEEEEcc
Q 013914 242 VKLKDG---RTLEADIVVVGV 259 (434)
Q Consensus 242 v~~~~g---~~~~~D~vi~a~ 259 (434)
+...++ ++++||.|++|.
T Consensus 103 ~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 103 VEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEESSSCCCEEEEESEEECCC
T ss_pred EEECCCCeEEEEEcCEEEEcC
Confidence 655443 358999999874
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.71 E-value=2.6e-17 Score=126.29 Aligned_cols=96 Identities=21% Similarity=0.428 Sum_probs=86.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC---CeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINN---IDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGE 238 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~ 238 (434)
.|++++|||+|++|+|+|..+.+++ .+||++++.+++++. +|+++++.+.+.++++||++++++++++++...++.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~-~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~ 97 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRG-FDHTLREELTKQLTANGIQILTKENPAKVELNADGS 97 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSC
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcc-cchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCe
Confidence 5799999999999999998877654 579999999999986 899999999999999999999999999998755665
Q ss_pred EEEEEeCCCcEEECCEEEEcc
Q 013914 239 VKEVKLKDGRTLEADIVVVGV 259 (434)
Q Consensus 239 v~~v~~~~g~~~~~D~vi~a~ 259 (434)
. .+++++|++++||.|++|+
T Consensus 98 ~-~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 98 K-SVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp E-EEEETTSCEEEESEEEECS
T ss_pred E-EEEECCCcEEEeCEEEEeC
Confidence 4 6899999999999999985
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=8.3e-17 Score=135.60 Aligned_cols=156 Identities=15% Similarity=0.153 Sum_probs=122.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC--------------------CccCCHHHHHHHHHHHHhcCcEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM--------------------PRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
.++|+|||+|++|+++|..+++.|.+|.++++..... .....+++...+.+.+++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 4789999999999999999999999999998553211 11124678888888889999999
Q ss_pred EcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC-----ccChhhhhccccc-cCCcEEeCC-CCCCCCCcEEEe
Q 013914 223 IKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG-----RPLISLFKGQVAE-NKGGIETDD-FFKTSADDVYAV 295 (434)
Q Consensus 223 ~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~-----~p~~~~~~~~~~~-~~g~i~vd~-~~~t~~~~iya~ 295 (434)
..+ .|.+++...+ ...+.+. ..+..+|.+++++|. .|++.++..++++ ++|+|.+|+ +++|+.|+|||+
T Consensus 85 ~~~-~V~~~~~~~~--~~~v~~~-~~~~~~~~~~~a~g~~~~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~ 160 (192)
T d1vdca1 85 FTE-TVTKVDFSSK--PFKLFTD-SKAILADAVILAIGAVAKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAA 160 (192)
T ss_dssp ECC-CCCEEECSSS--SEEEECS-SEEEEEEEEEECCCEEECCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEEC
T ss_pred eee-eEEecccccC--cEEeccc-ceeeeeeeEEEEeeeeecccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEe
Confidence 866 5778876333 2445444 447889999999884 5888888888887 789999996 799999999999
Q ss_pred cccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 296 GDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 296 GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
|||...+. .....|..+|..||.++..
T Consensus 161 GDv~~~~~---------r~~v~A~g~G~~aA~~~~~ 187 (192)
T d1vdca1 161 GDVQDKKY---------RQAITAAGTGCMAALDAEH 187 (192)
T ss_dssp GGGGCSSC---------CCHHHHHHHHHHHHHHHHH
T ss_pred eecCCccc---------ceEEEEEechHHHHHHHHH
Confidence 99998654 3466777899999888754
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.5e-16 Score=133.84 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=120.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc---------------CCccCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC---------------MPRLFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~---------------~~~~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
+.++|+|||+|++|+++|..+++.|.+|+++++.+.. .....+.++.+.+...+.+.++++..+
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 82 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 82 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence 3578999999999999999999999999999865431 111234677788888899999999876
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc-----cChhhhhccccccCCcEEeCC-----CCCCCCCcEEEec
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR-----PLISLFKGQVAENKGGIETDD-----FFKTSADDVYAVG 296 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~-----p~~~~~~~~~~~~~g~i~vd~-----~~~t~~~~iya~G 296 (434)
.|.++...++. ..++... ..+.++.+++++|.. |+..++...+++++|+|.+|+ .++|++|+|||+|
T Consensus 83 ~V~~~~~~~~~--~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~~g~i~~~~~~~~~~~~T~v~gV~aaG 159 (190)
T d1trba1 83 HINKVDLQNRP--FRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAG 159 (190)
T ss_dssp CEEEEECSSSS--EEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTTTSCEETTEECCCCSSSSCTTBCSSTTEEECG
T ss_pred eeEEEecCCCc--EEEEEee-eeEeeeeeeeecceeeeeecccceeecceEecCCcEEEEecCCcccccccccCeEEEeE
Confidence 57888763322 4455554 488999999999965 455566666677789999994 5689999999999
Q ss_pred ccccccccccCcceecccHHHHHHHHHHHHHHHhcc
Q 013914 297 DVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMAT 332 (434)
Q Consensus 297 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 332 (434)
||++... .++..|..+|..||.++...
T Consensus 160 Dv~~~~~---------~q~i~Aag~G~~AA~~a~~y 186 (190)
T d1trba1 160 DVMDHIY---------RQAITSAGTGCMAALDAERY 186 (190)
T ss_dssp GGGCSSS---------CCHHHHHHHHHHHHHHHHHH
T ss_pred EecCcce---------eEEEEEeccHHHHHHHHHHH
Confidence 9987543 45667778899999776543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.69 E-value=7.8e-17 Score=123.77 Aligned_cols=94 Identities=30% Similarity=0.494 Sum_probs=82.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|.++|.+||++++.+++++. +|+++.+.+.+.++++||++++++.+++++..+++. .
T Consensus 21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~--~ 97 (117)
T d1ebda2 21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGV--T 97 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEE--E
T ss_pred cCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEE--E
Confidence 5899999999999999999999999999999999999987 899999999999999999999999999998754542 3
Q ss_pred EEe-CCC--cEEECCEEEEc
Q 013914 242 VKL-KDG--RTLEADIVVVG 258 (434)
Q Consensus 242 v~~-~~g--~~~~~D~vi~a 258 (434)
+.+ .+| +++++|.|+++
T Consensus 98 v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 98 VTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEEETTEEEEEEESEEEEC
T ss_pred EEEEeCCCEEEEEeEEEEEC
Confidence 433 344 46999999874
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.69 E-value=5.6e-17 Score=124.01 Aligned_cols=95 Identities=33% Similarity=0.440 Sum_probs=82.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|++.|++||++++.+++++. +++++.+.+.+.++++||+++++++|++++. +....
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~ 95 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYEN---GCLLA 95 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEETTCEEEEEET---TEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEcCcEEEEEcC---CeEEE
Confidence 5799999999999999999999999999999999999997 7999999999999999999999999999863 32222
Q ss_pred EEe-CCCcEEECCEEEEccc
Q 013914 242 VKL-KDGRTLEADIVVVGVG 260 (434)
Q Consensus 242 v~~-~~g~~~~~D~vi~a~G 260 (434)
... .++++++||.|++|+|
T Consensus 96 ~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 96 NDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp ECSSSCCCEECCSCEEECCC
T ss_pred EEcCCCeEEEEcCEEEEecC
Confidence 222 2335799999999998
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.69 E-value=2.2e-17 Score=144.52 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=63.1
Q ss_pred cEEECCEEEEcccCccChh-----------hhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccH
Q 013914 248 RTLEADIVVVGVGGRPLIS-----------LFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHV 315 (434)
Q Consensus 248 ~~~~~D~vi~a~G~~p~~~-----------~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~ 315 (434)
+.+++|.+++++|.+|... +.+.++.+ ++|+|.||+++|||.|+|||+|||++.+ ..+
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~----------~~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV----------MLT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC----------CCH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCc----------cch
Confidence 4688999999999888643 22446667 6789999999999999999999998765 346
Q ss_pred HHHHHHHHHHHHHHhccC
Q 013914 316 DHARKSAEQAVKTIMATE 333 (434)
Q Consensus 316 ~~A~~~g~~aa~~i~~~~ 333 (434)
..|..+|+.||+++++..
T Consensus 218 ~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 218 PVAINEGAAFVDTVFANK 235 (240)
T ss_dssp HHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHhCCC
Confidence 678899999999999863
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.69 E-value=7.5e-17 Score=134.99 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=116.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCccCCHHHHH---------HHHHHHHhcCcEEEcCCeEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPRLFTADIAA---------FYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~~~~~~~~~---------~~~~~l~~~GV~~~~~~~v~~i 231 (434)
+|+++|||+|++|+|+|..|.+.+ .+|+++++.+.+........... .....+...++.+..+.. ..+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSA-TGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCE-EEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeee-Eee
Confidence 689999999999999999999987 58999999887665422222111 112345667888876643 333
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhc---------cccccCCcEEeCCC-CC-CCCCcEEEeccccc
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKG---------QVAENKGGIETDDF-FK-TSADDVYAVGDVAT 300 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~---------~~~~~~g~i~vd~~-~~-t~~~~iya~GD~~~ 300 (434)
.. .. ..+.+.+++++++|.+|+|+|.+|++..+.. +...+.+++.+++. ++ ++.++||++||++.
T Consensus 81 ~~--~~--~~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~~ 156 (186)
T d1fcda1 81 DP--DK--KLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASI 156 (186)
T ss_dssp CT--TT--TEEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSEE
T ss_pred ee--cc--ceeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEeccccc
Confidence 22 33 2467888999999999999999999876532 22335667777654 43 58999999999986
Q ss_pred ccccccCcceecccHHHHHHHHHHHHHHHhccCCC
Q 013914 301 FPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGG 335 (434)
Q Consensus 301 ~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~ 335 (434)
.... ++.+..|..||+.+|+||.....|
T Consensus 157 ~~~~-------p~~~~~A~~q~~~~A~ni~~~~~G 184 (186)
T d1fcda1 157 ANPM-------PKSGYSANSQGKVAAAAVVVLLKG 184 (186)
T ss_dssp CTTC-------CSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCC-------CchHhHHHHHHHHHHHHHHHHhcC
Confidence 5431 156889999999999999876554
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.5e-16 Score=121.28 Aligned_cols=98 Identities=21% Similarity=0.343 Sum_probs=85.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.|++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.++++||++++++++++++.++++....
T Consensus 21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~ 99 (125)
T d3grsa2 21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS 99 (125)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence 4799999999999999999999999999999999999986 899999999999999999999999999998866663323
Q ss_pred -EEeCCCc------EEECCEEEEccc
Q 013914 242 -VKLKDGR------TLEADIVVVGVG 260 (434)
Q Consensus 242 -v~~~~g~------~~~~D~vi~a~G 260 (434)
+...+|+ .+++|.|++|+|
T Consensus 100 ~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 100 MVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEccCCcCcCccccccCCEEEEEeC
Confidence 2334442 578999999998
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.67 E-value=2.3e-16 Score=137.72 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=51.5
Q ss_pred ccCccChhhh---hccccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 259 VGGRPLISLF---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 259 ~G~~p~~~~~---~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
.|..|++..+ +.++..++|+|.||++|||+.|+|||+|||.+.+ .+...|..+|+.||++|++..+
T Consensus 167 ~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~----------~l~~~A~~eg~~aa~~i~g~~~ 235 (238)
T d1aoga1 167 NGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRV----------MLTPVAINEAAALVDTVFGTTP 235 (238)
T ss_dssp CCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSC----------CCHHHHHHHHHHHHHHHHSSSC
T ss_pred cccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCc----------cchhhHHHHHHHHHHHHcCCCC
Confidence 3344444433 3456667899999999999999999999998765 3566788999999999998653
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.65 E-value=1.7e-15 Score=130.54 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc---------------------------c-------CC--c-cCCH
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW---------------------------C-------MP--R-LFTA 205 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~---------------------------~-------~~--~-~~~~ 205 (434)
...++|||+|+.|+++|..+++.|.+|+++++.+. + .. . ..+.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI 84 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence 35799999999999999999999999999986421 0 00 0 0000
Q ss_pred ------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh------
Q 013914 206 ------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL------ 267 (434)
Q Consensus 206 ------------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~------ 267 (434)
.........+++.+++++.+.. .+.. .. .+ ..++.++.+|.+++|+|.+|....
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~--~~~~--~~---~~-~~~~~~i~a~~viiAtG~~p~~lp~~~~~~ 156 (220)
T d1lvla1 85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWA--KVLD--GK---QV-EVDGQRIQCEHLLLATGSSSVELPRRPRTK 156 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCE--EEEE--TT---EE-EETTEEEECSEEEECCCEEECCBTEEECCS
T ss_pred HHHhhhheeEEeeeccchhhhhccCceEEEEeee--cccC--cc---cc-cccceeEeeceeeEcCCCCccccccccccc
Confidence 1122334556778888877643 2221 11 11 234568999999999998886521
Q ss_pred ----hhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 268 ----FKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 268 ----~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
....+.+++|+|.||+++||+.|+|||+|||++.+ .++..|..+|+.|+++|++..
T Consensus 157 ~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~----------~l~~~a~~~g~~~a~~i~G~~ 216 (220)
T d1lvla1 157 GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEP----------MLAHRAMAQGEMVAEIIAGKA 216 (220)
T ss_dssp SSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred CCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCcc----------cchhhhhhhHHHHHHHHcCCC
Confidence 12234447899999999999999999999999875 356778899999999999864
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.61 E-value=2.3e-15 Score=130.47 Aligned_cols=159 Identities=20% Similarity=0.247 Sum_probs=102.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-----------------------------------cCC-----
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR-----------------------------------LFT----- 204 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~-----------------------------------~~~----- 204 (434)
-++|||+|+.|+.+|..+++.|.+|+++++.+.+... .+.
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~ 87 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR 87 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence 4899999999999999999999999999976543100 001
Q ss_pred -------HHHHHHHHHHHHhcCcEEEcCCeEEEEE-------ecCCCcEEEEEeCCCcEEECCEEEEccc-CccChhhh-
Q 013914 205 -------ADIAAFYEGYYANKGIKIIKGTVAVGFT-------TNADGEVKEVKLKDGRTLEADIVVVGVG-GRPLISLF- 268 (434)
Q Consensus 205 -------~~~~~~~~~~l~~~GV~~~~~~~v~~i~-------~~~~g~v~~v~~~~g~~~~~D~vi~a~G-~~p~~~~~- 268 (434)
..+...+........++++.+.....-. ...............+...++.++++.| +.|++...
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 167 (229)
T d1ojta1 88 AYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLIS 167 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEECGGGTT
T ss_pred HHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEEEEecccCCcccccc
Confidence 0112233445566777776543211100 0000000001111112455666666665 55655432
Q ss_pred --hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 --KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 --~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
..++.+ ++|+|.||+++|||+|+|||+|||++.+ .++..|..+|+.||.+|++..
T Consensus 168 ~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~----------~l~~~A~~eG~~Aa~~i~G~~ 225 (229)
T d1ojta1 168 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP----------MLAHKAVHEGHVAAENCAGHK 225 (229)
T ss_dssp GGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSS----------CCHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCc----------chHHHHHHHHHHHHHHHcCCC
Confidence 346776 7899999999999999999999999765 356678899999999999864
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=4.4e-15 Score=114.22 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=80.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC--cE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG--EV 239 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g--~v 239 (434)
.|++++|||+|++|+|+|..|+++|.+|+++.+. ++++. +|+++++.+.+.|+++||++++++.+++++..+++ ..
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~~-~D~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~ 96 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG-FDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGR 96 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSSTT-SCHHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCE
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhcc-CCHHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccE
Confidence 5899999999999999999999999999999864 67776 89999999999999999999999999999753332 22
Q ss_pred EEEEeCCC-----cEEECCEEEEccc
Q 013914 240 KEVKLKDG-----RTLEADIVVVGVG 260 (434)
Q Consensus 240 ~~v~~~~g-----~~~~~D~vi~a~G 260 (434)
..+.+.++ ..+++|.|++|+|
T Consensus 97 ~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 97 LKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEEEECCCCcEEEEECCEEEEEeC
Confidence 34444332 2467999999998
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.59 E-value=7.4e-14 Score=122.66 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCC-cEEEEEeCCCcEEECCEEEEcccCccChhh---------hhc-cc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLISL---------FKG-QV 272 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~---------~~~-~~ 272 (434)
..++.+.+.+.+++.||+++++++|+++...+++ .+..+...++.++.||.||+|+|-.+...+ ++. +.
T Consensus 108 a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~ 187 (253)
T d2gqfa1 108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI 187 (253)
T ss_dssp THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence 5678888999999999999999999999875554 333345567779999999999995432221 111 11
Q ss_pred cc------cCCcEE---eC-CCCCC-CCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 273 AE------NKGGIE---TD-DFFKT-SADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 273 ~~------~~g~i~---vd-~~~~t-~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
.. ..|++. +| .+|++ .+|++|.+|.+.+......| -..++|...|..|++.|..
T Consensus 188 ~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg-----~n~~~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 188 PVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGG-----YNFQWAWSSAYACALSISR 252 (253)
T ss_dssp CEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTT-----HHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCC-----EehhhhHhHHHHHHHHHhc
Confidence 11 123333 34 35776 78999999977765432222 1245666788888888753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.56 E-value=7e-19 Score=153.36 Aligned_cols=170 Identities=14% Similarity=0.121 Sum_probs=96.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+|||||+||++||..|+++|++ |+|+|+++..... +.........+.+... .......+.
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~---v~l~E~~~~~GG~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~ 112 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYT---VHLTDTAEKIGGH-------LNQVAALPGLGEWSYH-----RDYRETQIT 112 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTTTT-------HHHHTTSTTCGGGGHH-----HHHHHHHHH
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccc---eeeEeeccccCCc-------cccccccceeeccccc-----chhHHHHHH
Confidence 468999999999999999999999987 9999998764321 0000001111111000 000011111
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+...... . ..++...+.+...+..++.||++|+|||+.+..+.. ++.+.......++...... . ....
T Consensus 113 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~-~~~~ 180 (233)
T d1djqa3 113 KLLKKNK---E-SQLALGQKPMTADDVLQYGADKVIIATGASECTLWN---ELKARESEWAENDIKGIYL----I-GDAE 180 (233)
T ss_dssp HHHTTCT---T-CEEECSCCCCCHHHHHTSCCSEEEECCCEECCHHHH---HHHHTTHHHHHTTCCEEEE----C-GGGT
T ss_pred HHhhcce---e-eeeecccccccchhhhhhccceeeeccCCCcccccc---cccccccccchhhhhhhhh----c-cccC
Confidence 1111100 0 112223333333333457899999999998765542 1111000000000000000 0 0146
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP 200 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~ 200 (434)
++++|+|+|++|+|+|..|.+.|.+|+++++.+.++.
T Consensus 181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred CceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 8999999999999999999999999999999887643
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.7e-13 Score=114.11 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=118.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc--cC-----------CccCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW--CM-----------PRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~--~~-----------~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.|+|||+|++|+++|..+.+.|.+|+++++... +. +....+.+...+...+++.+++......+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 489999999999999999999999999986421 10 11123667777888888999999988888887
Q ss_pred EecCCC-cEEEEEeCCCcEEECCEEEEcccCccCh-hhhhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCc
Q 013914 232 TTNADG-EVKEVKLKDGRTLEADIVVVGVGGRPLI-SLFKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYRE 308 (434)
Q Consensus 232 ~~~~~g-~v~~v~~~~g~~~~~D~vi~a~G~~p~~-~~~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~ 308 (434)
...... ........+..++.++.++.++|..++. ......+.. ..|.|.+|..++|+.|+||++|||...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~----- 157 (184)
T d1fl2a1 83 IPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY----- 157 (184)
T ss_dssp ECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS-----
T ss_pred cccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc-----
Confidence 653332 3344556677789999999999965544 444444444 67889999999999999999999998654
Q ss_pred ceecccHHHHHHHHHHHHHHHhc
Q 013914 309 MRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 309 ~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
+....|..+|..||..+..
T Consensus 158 ----~~~vva~g~G~~aA~~~~~ 176 (184)
T d1fl2a1 158 ----KQIIIATGEGAKASLSAFD 176 (184)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH
T ss_pred ----CCcEEEEECcHHHHHHHHH
Confidence 3455666777777776654
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.53 E-value=3.8e-14 Score=124.47 Aligned_cols=122 Identities=20% Similarity=0.240 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc--cCh-------hhhhc-ccc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR--PLI-------SLFKG-QVA 273 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~--p~~-------~~~~~-~~~ 273 (434)
..++.+.+.+.+++.||+++++++|+++.. +++.+..+.+++|+.+.+|.||+|+|-. |.+ .++.. +..
T Consensus 109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~ 187 (251)
T d2i0za1 109 AQSVVDALLTRLKDLGVKIRTNTPVETIEY-ENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT 187 (251)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCcccCCcEEEEEEE-ECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceee
Confidence 356778888999999999999999999987 4677778999999999999999999954 322 12221 221
Q ss_pred c---cCCcEEeC----CCC-CCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhc
Q 013914 274 E---NKGGIETD----DFF-KTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMA 331 (434)
Q Consensus 274 ~---~~g~i~vd----~~~-~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 331 (434)
. ..+.+.++ ..+ ....|++|.+|++........| .....|...|+.|+..+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-----~~~~~a~~~G~~a~~~~~~ 248 (251)
T d2i0za1 188 ITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-----YNITSALVTGRIAGTTAGE 248 (251)
T ss_dssp EEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-----HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-----HHHHHHHHHHHHHHHHHHH
Confidence 1 00111111 122 2478999999999865443222 2346677788888887643
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.50 E-value=5e-15 Score=119.93 Aligned_cols=135 Identities=13% Similarity=0.031 Sum_probs=97.7
Q ss_pred ecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEE--CCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 121 ATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVV--GGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 121 AtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~Vi--G~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
|||+.|..|++ +||.+..+.+.+ +.+++... +...+++++|+ |+|++|+|+|..|++.|++||++++.+++
T Consensus 4 atG~~~~~~~p--ipG~~~~~~~v~-t~~d~l~~----~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~ 76 (156)
T d1djqa2 4 TDGTNCLTHDP--IPGADASLPDQL-TPEQVMDG----KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA 76 (156)
T ss_dssp SSCCCTTTSSC--CTTCCTTSTTEE-CHHHHHHT----CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred CCCCCCCCCCC--CCCccCCCCEEE-CHHHHhcC----ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 89999988733 677765433222 55555432 22234555555 99999999999999999999999999988
Q ss_pred CCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhh
Q 013914 199 MPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK 269 (434)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 269 (434)
++. +++.....+.+.|++.||++++++.+.++.. ++ +.+.+.....++.+..++|..|+....+
T Consensus 77 ~~~-~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~--~~----v~l~~~~~~~~~~v~~~~g~~~~~~~~~ 140 (156)
T d1djqa2 77 NYM-HFTLEYPNMMRRLHELHVEELGDHFCSRIEP--GR----MEIYNIWGDGSKRTYRGPGVSPRDANTS 140 (156)
T ss_dssp THH-HHTTCHHHHHHHHHHTTCEEEETEEEEEEET--TE----EEEEETTCSCSCCCCCCTTSCSSCCCCC
T ss_pred ccc-cchhHHHHHHHHHhhccceEEeccEEEEecC--cc----eEEEeeeccccceeeeeeEEEecccCCc
Confidence 876 5777788899999999999999999999975 22 2232332334666777777777766543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.8e-16 Score=128.78 Aligned_cols=122 Identities=15% Similarity=0.209 Sum_probs=82.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||||||||+||..|+++|++ |+|+|+++..+-. +.........+.+.. ....+.+.++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~---Vtl~E~~~~~GG~-------l~~~~~~p~~~~~~~-----~~~~~~~~~~ 106 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQ---VTLFDAHSEIGGQ-------FNIAKQIPGKEEFYE-----TLRYYRRMIE 106 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSCTT-------HHHHTTSTTCTTHHH-----HHHHHHHHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccc---eEEEeccCccCce-------EEEEEeCcccchHHH-----HHHHHHHhhh
Confidence 468999999999999999999999987 9999999764311 111111111111110 0123445566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKN 163 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~ 163 (434)
+.++++++++.|+. + ....||.+|+|||+.|+.++. ++.+ .+
T Consensus 107 ~~gV~i~l~~~Vt~-----------~-~~~~~d~vilAtG~~~~~~~~---pg~~-----------------------~g 148 (179)
T d1ps9a3 107 VTGVTLKLNHTVTA-----------D-QLQAFDETILASGIPNRALAQ---PLID-----------------------SG 148 (179)
T ss_dssp HHTCEEEESCCCCS-----------S-SSCCSSEEEECCCEECCTTHH---HHHT-----------------------TT
T ss_pred cCCeEEEeCCEEcc-----------c-ccccceeEEEeecCCCccccc---chhc-----------------------cC
Confidence 78999999877642 1 125789999999998776552 3211 37
Q ss_pred CcEEEECCCHHHHHH
Q 013914 164 GKAVVVGGGYIGLEL 178 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~ 178 (434)
++++|+|+|..++++
T Consensus 149 ~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 149 KTVHLIGGCDVAMEL 163 (179)
T ss_dssp CCEEECGGGTCCSSC
T ss_pred CEEEEECCcHhhhhc
Confidence 899999999888775
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=2.2e-13 Score=118.03 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=103.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----CC-------H---------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FT-------A--------------------------- 205 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----~~-------~--------------------------- 205 (434)
.++|||+|+.|+.+|..+++.|.+|.++++.+.+.... ++ .
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~ 86 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINVAN 86 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecchhh
Confidence 58999999999999999999999999999775532100 00 0
Q ss_pred ----------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--------cEEECCEE--------EEcc
Q 013914 206 ----------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--------RTLEADIV--------VVGV 259 (434)
Q Consensus 206 ----------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--------~~~~~D~v--------i~a~ 259 (434)
.+......+.++.+|+++.+.- ++. +.....+....+ ..++++.+ +.++
T Consensus 87 ~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a--~f~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~ 161 (233)
T d1v59a1 87 FQKAKDDAVKQLTGGIELLFKKNKVTYYKGNG--SFE---DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESEE--EES---SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECCCS
T ss_pred hhheeeeEEEEeecceeeeeccCCeEEEEEEE--EEe---cCCCcEEEecccccceeeeeeeccCCeEEEecccccceec
Confidence 0112223344556676655421 121 111122322222 13344444 4489
Q ss_pred cCccChhhh---hccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 260 GGRPLISLF---KGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 260 G~~p~~~~~---~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
|++|+++.+ +.++.+ +.|+|.||++++|+.|+|||+|||...+ .+...|..+|+.|+++|++..
T Consensus 162 G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~----------~l~~~a~~~G~~aa~~i~~~~ 229 (233)
T d1v59a1 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP----------MLAHKAEEEGIAAVEMLKTGH 229 (233)
T ss_dssp CEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSC----------CCHHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccH----------HHHHHHHHHHHHHHHHHccCC
Confidence 999998855 335666 6789999999999999999999999776 346678899999999998764
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.48 E-value=1.4e-18 Score=154.00 Aligned_cols=34 Identities=29% Similarity=0.600 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||++||||||||++||.++++.|.+ |+|||++..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~---V~liE~~~~ 35 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAK---VALVEKSRL 35 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSST
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCe---EEEEecCCC
Confidence 8999999999999999999999988 999999754
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1e-16 Score=137.94 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=100.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCCC-------CCCCCCcccccCC-
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPEG-------TARLPGFHVCVGS- 72 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~- 72 (434)
++|||+||||||||++||.++++.|.+ |+|||++...+ +..|..++.+..... .....++......
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~k---V~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 77 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQK---CALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 77 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCC---EEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCE---EEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence 579999999999999999999999987 99999975321 111222222211100 0000000000000
Q ss_pred --------------CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCC
Q 013914 73 --------------GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGAD 138 (434)
Q Consensus 73 --------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~ 138 (434)
.........+++.++++......... ...+ ..++..+.++++++|||+.|..|+.++.++..
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~~-~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~ 153 (217)
T d1gesa1 78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKTL-EVNGETITADHILIATGGRPSHPREPANDNIN 153 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTEE-EETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eeee-cCCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence 00011223455678888877544321 2222 23566899999999999999888754333211
Q ss_pred --CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEE
Q 013914 139 --AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVS 190 (434)
Q Consensus 139 --~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~ 190 (434)
..++.+.... ...+ +...+..++++.++|+|.+|+|+|..+.+.|.+|+
T Consensus 154 l~~~gv~~~~~~--~i~~-d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~ 204 (217)
T d1gesa1 154 LEAAGVKTNEKG--YIVV-DKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204 (217)
T ss_dssp HHHHTCCBCTTS--CBCC-CTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred cccccEEEcCCc--cEee-CchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence 0011110000 0000 00111145789999999999999999999988774
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.3e-12 Score=110.18 Aligned_cols=151 Identities=21% Similarity=0.303 Sum_probs=109.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCC----------------------------c--------cCC-H--
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMP----------------------------R--------LFT-A-- 205 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~----------------------------~--------~~~-~-- 205 (434)
.++|||+|+.|+++|..+++.|.+|+++++.+ +.. . .++ +
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 47999999999999999999999999998753 100 0 000 0
Q ss_pred ---------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh---------
Q 013914 206 ---------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL--------- 267 (434)
Q Consensus 206 ---------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~--------- 267 (434)
.+...+...+++.||++.......... . ....++..+.++.+++|+|.+|....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~l 154 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNINL 154 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCccc
Confidence 122334456778899988775432221 1 12245668999999999997765421
Q ss_pred hhccccc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 268 FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 268 ~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
...++.. +++.+.+|+.++|+.|+||++||+.... +.+..+..+|+.++.++++..+
T Consensus 155 ~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~p 212 (217)
T d1gesa1 155 EAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNKP 212 (217)
T ss_dssp HHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTCT
T ss_pred ccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCCC
Confidence 1235555 6789999999999999999999998765 4566788899999999998653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.37 E-value=5.7e-12 Score=114.58 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEccc-CccChhhh----------
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVG-GRPLISLF---------- 268 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G-~~p~~~~~---------- 268 (434)
...+.+.+.+.+.+.|+++++++++.++..+++|++.++...+ + ..+.++.||+|+| +..|.++.
T Consensus 151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~ 230 (322)
T d1d4ca2 151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 230 (322)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccc
Confidence 4567788888889999999999999999876778887776532 3 2588999999999 33333321
Q ss_pred -----------------hccc---cccCCcEEeC-------CCCCCCCCcEEEecccccccccccCcceec-ccHHHHHH
Q 013914 269 -----------------KGQV---AENKGGIETD-------DFFKTSADDVYAVGDVATFPMKLYREMRRV-EHVDHARK 320 (434)
Q Consensus 269 -----------------~~~~---~~~~g~i~vd-------~~~~t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~ 320 (434)
..+. .++.+++.+| +..+|.+|++||+|+|+.... +..+.- ..+..+.-
T Consensus 231 ~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvh---G~nrlg~~~~~e~~v 307 (322)
T d1d4ca2 231 KATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEVKSEKTGKPITGLYAAGEVTGGVH---GANRLGGNAISDIVT 307 (322)
T ss_dssp CBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEEEBTTTSSEEEEEEECGGGBCSSS---TTSCCTTHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHHcCCcceecccceEEecCceEEEECCCCCEeCceEEchhhcCCcc---ccccchhhHHHHHHH
Confidence 0111 1133444444 344567899999999985422 111111 23455555
Q ss_pred HHHHHHHHHh
Q 013914 321 SAEQAVKTIM 330 (434)
Q Consensus 321 ~g~~aa~~i~ 330 (434)
.|+.|+++++
T Consensus 308 ~g~~ag~~aa 317 (322)
T d1d4ca2 308 YGRIAGASAA 317 (322)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666654
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.32 E-value=3e-11 Score=108.97 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC--C--cEEECCEEEEccc-CccChhhhh----------
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD--G--RTLEADIVVVGVG-GRPLISLFK---------- 269 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~--g--~~~~~D~vi~a~G-~~p~~~~~~---------- 269 (434)
..+...+.+.+++.|++++++++++++..+++|++.+|...+ + .++.++.||+|+| +..|.++..
T Consensus 145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~ 224 (308)
T d1y0pa2 145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFI 224 (308)
T ss_dssp HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCC
T ss_pred HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCcccccHHHHHHhccchhhhc
Confidence 456777788888999999999999998876778888887643 3 2588999999999 544444321
Q ss_pred ---------ccccc--cCCcEEeC-CCCC----------CCCCcEEEecccccccccccCcceec-ccHHHHHHHHHHHH
Q 013914 270 ---------GQVAE--NKGGIETD-DFFK----------TSADDVYAVGDVATFPMKLYREMRRV-EHVDHARKSAEQAV 326 (434)
Q Consensus 270 ---------~~~~~--~~g~i~vd-~~~~----------t~~~~iya~GD~~~~~~~~~~~~~~~-~~~~~A~~~g~~aa 326 (434)
+++.+ .-|.-..| ++.| +..|++|++|.|+..... ..+.- ..+....--|+.|+
T Consensus 225 ~~~~~~~tGdg~~ma~~aGa~l~~me~vq~~p~~~~~~~~~~~gl~a~G~~~~g~hg---~nrlg~~~~~~~~~~g~~ag 301 (308)
T d1y0pa2 225 STNQPGAVGDGLDVAENAGGALKDMQYIDTKAEVMNAKKQVIPGLYGAGEVTGGVHG---ANRLGGNAISDIITFGRLAG 301 (308)
T ss_dssp BCSCTTCSSHHHHHHHHTTCCEECTTCBCTTCEEECTTSCEEEEEEECSTTEESSST---TSCCTTHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHcCCCccCccceecccceecCCCCcccceeehhhhhccccC---cCCCchhhHHHHHHHHHHHH
Confidence 01111 22334444 2222 236899999999865322 11111 23444445566666
Q ss_pred HHHh
Q 013914 327 KTIM 330 (434)
Q Consensus 327 ~~i~ 330 (434)
++++
T Consensus 302 ~~a~ 305 (308)
T d1y0pa2 302 EEAA 305 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.27 E-value=2.9e-11 Score=107.50 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|.+++..+++ ..|.+++| ++.||.||+|+|.-
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~--v~V~t~~g-~i~a~~VViAaG~~ 204 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDS--VKIETANG-SYTADKLIVSMGAW 204 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSC--EEEEETTE-EEEEEEEEECCGGG
T ss_pred ccccccccccccccccccccCCcEEEEEEEECCE--EEEEECCc-EEEcCEEEECCCCc
Confidence 5677888899999999999999999999984443 47888888 69999999999954
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.27 E-value=7.5e-12 Score=111.07 Aligned_cols=57 Identities=25% Similarity=0.207 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+..+.+.+.+.++++|++++.+++|++|.. ++....|++++| ++.||.||+|+|.-.
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~t~~g-~i~a~~vV~AaG~~s 206 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIKTPSG-DVWANHVVVASGVWS 206 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEecCCe-EEEcCEEEECCCccH
Confidence 456778888899999999999999999987 455578999888 799999999999543
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.26 E-value=3.7e-12 Score=115.22 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC--cEEECCEEEEcccCccChhhhhcc-cc-------c-cC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG--RTLEADIVVVGVGGRPLISLFKGQ-VA-------E-NK 276 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~-~~-------~-~~ 276 (434)
...+.++.++.|++++++++|++|+.++++.. .+...+| ++++||.||+|+|......++... .. . ..
T Consensus 222 ~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~-v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~ 300 (347)
T d2ivda1 222 QVLIDALAASLGDAAHVGARVEGLAREDGGWR-LIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL 300 (347)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEECC--CCE-EEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred HHHHHHHHHHhhcccccCCEEEEEEEeCCeEE-EEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence 44455556667999999999999987444422 2233344 468999999999853333333210 00 0 11
Q ss_pred Cc---EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 277 GG---IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 277 g~---i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
+. +...+...++.|++|++||..... .+..++.+|+.+|+.|+
T Consensus 301 ~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 301 GHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV 346 (347)
T ss_dssp THHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred CcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence 11 111112235799999999987643 35567889999998875
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.25 E-value=1.1e-11 Score=102.91 Aligned_cols=110 Identities=25% Similarity=0.424 Sum_probs=82.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+.+|+|||||++|+.+|..|++.|.+ ..++++++....+|.++.++..+....... .........
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~-v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~ 67 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQ-GLITVVGDEAERPYDRPPLSKDFMAHGDAE--------------KIRLDCKRA 67 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCC-SCEEEEESSCSCCBCSGGGGTTHHHHCCGG--------------GSBCCGGGS
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCc-eEEEEEecccccchhhHHHhhhhhhhhhhh--------------hHHHHHhhc
Confidence 45699999999999999999999864 457777777666666555443332111110 111233445
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccc
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRL 129 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~ 129 (434)
.+++++.+..+..++.+...+.+.+++++.||.+++|+|..|+..
T Consensus 68 ~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~~~ 112 (183)
T d1d7ya1 68 PEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAV 112 (183)
T ss_dssp TTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCE
T ss_pred CCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcccc
Confidence 689999999999999999999999999999999999999988643
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.25 E-value=6.2e-11 Score=107.25 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeC--CCc--EEECCEEEEccc
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLK--DGR--TLEADIVVVGVG 260 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~--~g~--~~~~D~vi~a~G 260 (434)
..+.+.+.+.+++.|+++++++++.++..++++++.++... +++ .+.++.||+|+|
T Consensus 148 ~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtG 207 (317)
T d1qo8a2 148 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATG 207 (317)
T ss_dssp HHHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCC
T ss_pred hhhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecc
Confidence 56778888899999999999999999877678888877654 343 578999999999
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.24 E-value=2.3e-10 Score=104.37 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccCccCh------------h
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGGRPLI------------S 266 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~~p~~------------~ 266 (434)
...+...+.+..++.|++++.++.+.++.. +++++.++.. .+|+ .+.++.||+|||--... +
T Consensus 157 G~~i~~~l~~~~~~~gv~i~~~~~~~~li~-~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGd 235 (336)
T d2bs2a2 157 GHTMLFAVANECLKLGVSIQDRKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGT 235 (336)
T ss_dssp HHHHHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCH
T ss_pred HHHHHHHHHHHHHhccccccceeeeeeccc-ccccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccch
Confidence 345667777888899999999999988876 4666655544 4564 47899999999832100 0
Q ss_pred ----hhhccc-cc-cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 267 ----LFKGQV-AE-NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 267 ----~~~~~~-~~-~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
.+..+. .+ +.++|.+|+.++|+.|++|++||++........ +.--..+..+...+..+++.+.
T Consensus 236 g~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~-~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 236 GTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFN-RLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTC-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccc-cchhhccchhhhhcchhHHHHH
Confidence 112332 23 678899999999999999999998764221000 0000234445555555555544
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.4e-11 Score=113.85 Aligned_cols=116 Identities=12% Similarity=0.130 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh---------hhccccc--cC
Q 013914 208 AAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL---------FKGQVAE--NK 276 (434)
Q Consensus 208 ~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~---------~~~~~~~--~~ 276 (434)
.....+.+++.|++++++++|.+|..+.++ ..|++.+|+++++|.||+|++......+ ....+.. ..
T Consensus 210 ~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~--v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~ 287 (383)
T d2v5za1 210 GQVSERIMDLLGDRVKLERPVIYIDQTREN--VLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPP 287 (383)
T ss_dssp HHHHHHHHHHHGGGEEESCCEEEEECSSSS--EEEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCT
T ss_pred hHHHHHHHHHcCCeEEecCcceEEEecCCe--EEEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccC
Confidence 344455567889999999999999874333 4689999999999999999873211111 0001110 11
Q ss_pred Cc-EEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 277 GG-IETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 277 g~-i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
+. -.....++....+++.+|+....... ..+..|..+|+.+|..++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~~~ 337 (383)
T d2v5za1 288 GILTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILHAM 337 (383)
T ss_dssp THHHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHHHT
T ss_pred CccchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHHHh
Confidence 11 11223344466789999976554322 456668889998998876543
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6.3e-11 Score=90.93 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=90.7
Q ss_pred CCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhc
Q 013914 139 AKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANK 218 (434)
Q Consensus 139 ~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (434)
..+++++-..+... +++++|+|||+|.+|+|.|..|.+...+|++++|.+.+. .++...+.+.+..+..
T Consensus 11 gkgV~yca~cD~~~--------~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~ 79 (126)
T d1trba2 11 GRGVSACATSDGFF--------YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENG 79 (126)
T ss_dssp TTTEESCHHHHGGG--------GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTS
T ss_pred CCCEEEEEecchHH--------hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhccc
Confidence 46787765544322 168999999999999999999999999999999998764 3788888888888889
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCC------cEEECCEEEEccc
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDG------RTLEADIVVVGVG 260 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g------~~~~~D~vi~a~G 260 (434)
++.++.++.+.++.. ++..+..+++.+. +++++|-+++++|
T Consensus 80 ~i~~~~~~~v~~i~G-~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 80 NIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp SEEEECSCEEEEEEE-CSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ceeEecceEEEEEEC-CCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 999999999999998 3445778887653 3689999999987
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.1e-11 Score=100.66 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=86.4
Q ss_pred cccccCCCCCCCCCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCe-----------------
Q 013914 126 VLRLTDFGVEGADAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNID----------------- 188 (434)
Q Consensus 126 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~----------------- 188 (434)
|+.|+ +||.+.+++++..++ +.. +...+++++|||+|++|+|+|..+.+.|.+
T Consensus 2 Pr~p~---IpG~d~~~V~~a~d~-----L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~ 71 (162)
T d1ps9a2 2 PRTPP---IDGIDHPKVLSYLDV-----LRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSS 71 (162)
T ss_dssp ECCCC---CBTTTSTTEEEHHHH-----HTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTT
T ss_pred CCCCC---CCCCCCCCeEEHHHH-----hhC--ccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcc
Confidence 56666 799999999874322 111 112578999999999999999999998854
Q ss_pred --------------------EEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc
Q 013914 189 --------------------VSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR 248 (434)
Q Consensus 189 --------------------v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~ 248 (434)
++.+..........++..........++..||+++.++.+.+++. +|.. +.. +|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~--~~~-~g~ 146 (162)
T d1ps9a2 72 LQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLH--VVI-NGE 146 (162)
T ss_dssp CCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEE--EEE-TTE
T ss_pred hhhhcccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCE--Eec-CCe
Confidence 334433333332224555667778889999999999999999974 5532 333 343
Q ss_pred --EEECCEEEEcccC
Q 013914 249 --TLEADIVVVGVGG 261 (434)
Q Consensus 249 --~~~~D~vi~a~G~ 261 (434)
+++||.||+|+|.
T Consensus 147 e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 147 TQVLAVDNVVICAGQ 161 (162)
T ss_dssp EEEECCSEEEECCCE
T ss_pred EEEEECCEEEECCCC
Confidence 5899999999995
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.23 E-value=8.5e-12 Score=103.43 Aligned_cols=110 Identities=20% Similarity=0.201 Sum_probs=77.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
++|||||||++|+.+|.+|++.+. +.+|+|||+++.+. .+.+............ ............
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 68 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDYY--TCYLSNEVIGGDRKLE-----------SIKHGYDGLRAH 68 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCEE--CSTTHHHHHHTSSCGG-----------GGEECSHHHHTT
T ss_pred CcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCccc--cccccccccchhhhhh-----------hhhhhhhhcccc
Confidence 689999999999999999999874 56799999986522 1111111111100000 011233445567
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
++.+..+ .+..++...+.+.+.++++++||+||+|||.+|+.+.
T Consensus 69 ~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~~~~ 112 (186)
T d1fcda1 69 GIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDK 112 (186)
T ss_dssp TEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEECCTT
T ss_pred ceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccchhh
Confidence 8888876 7777888888899999999999999999999887654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.23 E-value=1.2e-11 Score=100.89 Aligned_cols=105 Identities=29% Similarity=0.393 Sum_probs=77.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|||||||++|+.+|..|++ +.+ |+|+++++...+.++.++..+........ ......+++.+.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~---Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 66 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYE---VTVIDKEPVPYYSKPMLSHYIAGFIPRNR-----------LFPYSLDWYRKRG 66 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSE---EEEECSSSSCCCCSTTHHHHHTTSSCGGG-----------GCSSCHHHHHHHT
T ss_pred eEEEECCcHHHHHHHHHHHc-CCC---EEEEeccccccccccchhhhhhhhhhhhh-----------hhHHHHHHHHhcc
Confidence 79999999999999999976 444 99999988766665544332221110000 1234567788889
Q ss_pred cEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc
Q 013914 87 IELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
++++.++.+..++...+.+.. ++.++.||++++|+|..|.
T Consensus 67 v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 67 IEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNV 106 (167)
T ss_dssp EEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred ceeeeeccccccccccccccc-cccccccceeEEEEEecCC
Confidence 999999999999987666544 5567999999999998764
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.23 E-value=2.3e-11 Score=102.19 Aligned_cols=111 Identities=17% Similarity=0.252 Sum_probs=79.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhcC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKG 86 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
+|+|||||++|+.+|..|++.+. ..+|+++++++...|..+.+.. ++... ...... ......+.+++.|
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~-~~~~~~--------~~~~~~~~l~~~g 70 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGK-VKDVNS--------VRYMTGEKMESRG 70 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTS-SCCGGG--------SBSCCHHHHHHTT
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhccc-ccchHH--------HHHhhHHHHHHCC
Confidence 69999999999999999999864 5679999998876655443321 11111 000000 1134567788899
Q ss_pred cEEEcCCeeEEEECCCCEEEc---cCCc--EEEcceEEEecCCCccc
Q 013914 87 IELILSTEIVRADIASKTLLS---ATGL--IFKYQILVIATGSTVLR 128 (434)
Q Consensus 87 v~~~~~~~v~~i~~~~~~v~~---~~~~--~~~~d~lvlAtG~~~~~ 128 (434)
++++.++.|.+++.+.+.+++ .+++ ++.||++|+|+|+.|+.
T Consensus 71 i~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~ 117 (198)
T d1nhpa1 71 VNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE 117 (198)
T ss_dssp CEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred cEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence 999999999999999988764 3343 57899999999987653
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.3e-11 Score=90.71 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=73.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+.+|..|++.|.+ |+|+|+.+... + .+... ......+.+++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~~l---~----------------~~d~~----~~~~~~~~l~~ 74 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGLGAK---THLFEMFDAPL---P----------------SFDPM----ISETLVEVMNA 74 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCEEEEECCChhhHHHHHHhhccccE---EEEEeecchhh---h----------------hcchh----hHHHHHHHHHH
Confidence 46899999999999999999999986 99999986421 0 00000 01345667788
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG 123 (434)
.|++++.++.+..+..... ++.+.+|+++.+|.+++|+|
T Consensus 75 ~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 75 EGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 9999999999999876543 57788999999999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.2e-10 Score=89.18 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=83.1
Q ss_pred CCCCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 138 DAKNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 138 ~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
...+++++-..+... +++++|+|||+|.+|++.|..|.+...+|++++|.+.+.. ++...+ +..+.
T Consensus 13 ~gkGV~yca~cD~~~--------~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~~~---~~~~~ 78 (126)
T d1fl2a2 13 RTKGVTYCPHCDGPL--------FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVLQD---KLRSL 78 (126)
T ss_dssp BTTTEESCHHHHGGG--------GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHHHH---HHHTC
T ss_pred cCCCEEEEEecChhh--------cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccccc---ccccc
Confidence 357788765544322 2689999999999999999999999999999999987643 333322 33334
Q ss_pred cCcEEEcCCeEEEEEecCCCcEEEEEeCC---C--cEEECCEEEEcccC
Q 013914 218 KGIKIIKGTVAVGFTTNADGEVKEVKLKD---G--RTLEADIVVVGVGG 261 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g--~~~~~D~vi~a~G~ 261 (434)
.+|++++++++.++.. +++.+.++++.+ | +++++|.+++++|.
T Consensus 79 ~~I~v~~~~~v~~i~G-~~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 79 KNVDIILNAQTTEVKG-DGSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp TTEEEESSEEEEEEEE-SSSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred cceeEEcCcceEEEEc-cccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 5699999999999998 335677787754 4 36899999999983
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.16 E-value=5.1e-11 Score=90.82 Aligned_cols=93 Identities=16% Similarity=0.276 Sum_probs=72.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++++|||||+.|+-+|..|+++|.+ |+++|+.+..... .++. .......+.++
T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~---Vtli~~~~~~l~~---------------~~~~-------~~~~~~~~~l~ 83 (121)
T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVH---VSLVETQPRLMSR---------------AAPA-------TLADFVARYHA 83 (121)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTTTT---------------TSCH-------HHHHHHHHHHH
T ss_pred cCCeEEEECcchhHHHHHHHhhcccce---EEEEeeccccccc---------------cCCH-------HHHHHHHHHHH
Confidence 357899999999999999999999887 9999998652100 0000 00124456778
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecC
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATG 123 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG 123 (434)
+.|++++.++.++.+.. ..+.+.+|+++.+|.+|+|+|
T Consensus 84 ~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 84 AQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp TTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred HCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence 88999999999988754 468889999999999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.15 E-value=2.8e-11 Score=108.01 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC----CC-CccCccccCCCCCCCCCCcccc---------
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPY----ER-PALSKAYLFPEGTARLPGFHVC--------- 69 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~--------- 69 (434)
...||+|||||++||++|.+|++.|.+ |+|+|+++..+- ++ +.. ....+......+.....
T Consensus 6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~---v~i~Ek~~~iGGtW~~n~ypg~--~~d~~~~~~~~s~~~~~~~~~~~~~~ 80 (298)
T d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRS---VHVIETAGDVGGVWYWNRYPGA--RCDIESIEYCYSFSEEVLQEWNWTER 80 (298)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSSSSCTHHHHCCCTTC--BCSSCTTTSSCCSCHHHHHHCCCCBS
T ss_pred CCCCEEEECccHHHHHHHHHHHhCCCC---EEEEEcCCCcccccccCCCCCc--eeccccccccccccccccCCCCCccc
Confidence 357999999999999999999999986 999999876321 00 000 00000000000000000
Q ss_pred --cCCCCCCCChhhHhhcCc--EEEcCCeeEEEECC--CC--EEEccCCcEEEcceEEEecC--CCcccccC
Q 013914 70 --VGSGGERLLPEWYKEKGI--ELILSTEIVRADIA--SK--TLLSATGLIFKYQILVIATG--STVLRLTD 131 (434)
Q Consensus 70 --~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~--~~--~v~~~~~~~~~~d~lvlAtG--~~~~~~~~ 131 (434)
........+.++.++.++ .+.++++|+++..+ .+ .|.+.++.++++|++|+||| +.|..|..
T Consensus 81 ~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~ 152 (298)
T d1w4xa1 81 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGAL 152 (298)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHH
T ss_pred cCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcc
Confidence 000011223445566777 58889999988643 33 47788888999999999999 56766664
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.14 E-value=5.9e-11 Score=92.21 Aligned_cols=95 Identities=16% Similarity=0.316 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+..+++|||||+.|+.+|..|++.|.+ |+++|+.+... .+ .+ .... .....+.++
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~---Vtvie~~~~~l-~~------~~----~~~~-----------~~~~~~~~~ 88 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMH---VTLLDTAARVL-ER------VT----APPV-----------SAFYEHLHR 88 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSTT-TT------TS----CHHH-----------HHHHHHHHH
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcc---eeeeeeccccc-cc------cc----chhh-----------hhhhhhccc
Confidence 357899999999999999999999887 99999987521 00 00 0000 123456678
Q ss_pred hcCcEEEcCCeeEEEECCCC-----EEEccCCcEEEcceEEEecC
Q 013914 84 EKGIELILSTEIVRADIASK-----TLLSATGLIFKYQILVIATG 123 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~-----~v~~~~~~~~~~d~lvlAtG 123 (434)
+.|++++.++.+..++.... .+.+.+|+++++|.+|+|+|
T Consensus 89 ~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 89 EAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred ccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 88999999999999876432 36788999999999999998
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=4.4e-11 Score=100.20 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=99.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCc--------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPR--------LFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~--------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.+++|+|||+|++|+++|..|++.|. +|+++++.+.+... ...............+.+..+.....+....
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE 82 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence 47899999999999999999999997 59999998876431 2345556666666777788888776552211
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh--h---ccccc-cCCcEEeC-CCCCCCCCcEEEecccccccccc
Q 013914 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF--K---GQVAE-NKGGIETD-DFFKTSADDVYAVGDVATFPMKL 305 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~--~---~~~~~-~~g~i~vd-~~~~t~~~~iya~GD~~~~~~~~ 305 (434)
. ...+..+..++.+++++|..+...+. . ..... ..+....+ ..++|+.+.||++||+++..+
T Consensus 83 ~---------~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~-- 151 (196)
T d1gtea4 83 I---------TLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN-- 151 (196)
T ss_dssp B---------CHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC--
T ss_pred e---------eeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc--
Confidence 1 11122234578899999954332222 1 11112 23444444 468899999999999987653
Q ss_pred cCcceecccHHHHHHHHHHHHHHHh
Q 013914 306 YREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 306 ~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
+...|..+|+.++..+.
T Consensus 152 --------~av~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 152 --------TTVESVNDGKQASWYIH 168 (196)
T ss_dssp --------CHHHHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHhhhehhHh
Confidence 34455667777776654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=4.4e-11 Score=100.65 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC-CCCCCccCc-----cccCCCCCCCCCCcccccCCCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA-PYERPALSK-----AYLFPEGTARLPGFHVCVGSGGERLL 78 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
.|||||||||+||+.||.+++|.|.+ ++||+++... ....+.... +.+.......-+.... . .....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~k---tllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a-~---raQ~k 74 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVR---VGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWA-F---HARAK 74 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHH-H---HHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCc---EEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhh-H---HHHHH
Confidence 59999999999999999999999998 8999987321 111111110 0000000000000000 0 00000
Q ss_pred hhhHhhcCcEEEcCCeeEEEECCCCE---EEccCCcEEEcceEEEecCCCc
Q 013914 79 PEWYKEKGIELILSTEIVRADIASKT---LLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 79 ~~~~~~~~v~~~~~~~v~~i~~~~~~---v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
.......+++++.+ +|..+..+++. |.+.+|.++.++.+||+||.--
T Consensus 75 ~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 75 YLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp HHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred HHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 11122358899887 77777665553 5678888999999999999753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.08 E-value=4.5e-11 Score=108.37 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=66.9
Q ss_pred CcEEEcCCeEEEEEecCCCc----EEEEEe-----CCCcEEECCEEEEcccCccChhhh--hccccc------------c
Q 013914 219 GIKIIKGTVAVGFTTNADGE----VKEVKL-----KDGRTLEADIVVVGVGGRPLISLF--KGQVAE------------N 275 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~----v~~v~~-----~~g~~~~~D~vi~a~G~~p~~~~~--~~~~~~------------~ 275 (434)
+.+++++++|++|..+.++. ...+.. .+++.+++|.||+|++......+. ...... .
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 322 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHNY 322 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTTH
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccCC
Confidence 56889999999998644331 122222 234578999999998743221111 000000 0
Q ss_pred CCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccCC
Q 013914 276 KGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEG 334 (434)
Q Consensus 276 ~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (434)
++.+.+++.++|+.|+||++||+.+. ..+..|+.+|+.||..|+..+.
T Consensus 323 ~~~~~~~~~~~t~~pglf~aGd~~~g-----------~~~~~A~~~G~~aA~~i~~~L~ 370 (373)
T d1seza1 323 DSVLDAIDKMEKNLPGLFYAGNHRGG-----------LSVGKALSSGCNAADLVISYLE 370 (373)
T ss_dssp HHHHHHHHHHHHHSTTEEECCSSSSC-----------SSHHHHHHHHHHHHHHHHHHHS
T ss_pred CcEeecccccCCCCCCEEEEecCCCc-----------hhHHHHHHHHHHHHHHHHHHHh
Confidence 11223345567889999999999865 3467889999999999987664
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=6.5e-11 Score=98.62 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=72.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCChhh
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLPEW 81 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (434)
.+.+||+||||||+|++||.+|+|.|.+ |+|||+..... .+........++.+.... +..........
T Consensus 3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~---v~iie~~~~~g--------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 71 (190)
T d1trba1 3 TKHSKLLILGSGPAGYTAAVYAARANLQ---PVLITGMEKGG--------QLTTTTEVENWPGDPNDLTGPLLMERMHEH 71 (190)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTCC---CEEECCSSTTG--------GGGGCSBCCCSTTCCSSCBHHHHHHHHHHH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCc---eEEEEeecccc--------cccccchhhhhhccccccchHHHHHHHHHH
Confidence 3568999999999999999999999987 89999875421 111111112222221100 00001122334
Q ss_pred HhhcCcEEEcCCeeEEEECCCCEEE-ccCCcEEEcceEEEecCCCcc
Q 013914 82 YKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 82 ~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~~~ 127 (434)
..+.++.+..+ .|+.++....... ......+..+.+++++|..++
T Consensus 72 ~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 72 ATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117 (190)
T ss_dssp HHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred HHhcCcEEecc-eeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence 55678888876 7888887765432 233457899999999998764
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.05 E-value=1.2e-09 Score=99.39 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
|..+++|+|||||++||+||..|++.+. ..+|+|+||++..
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i 41 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP 41 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence 5567899999999999999999998764 2349999999764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.05 E-value=1.8e-10 Score=87.16 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=69.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+++|+.+... +.+... ......+.+++
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~---Vtlve~~~~il-------------------~~~d~~----~~~~l~~~l~~ 74 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQ---VSVVEARERIL-------------------PTYDSE----LTAPVAESLKK 74 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccc---eEEEeeecccc-------------------ccccch----hHHHHHHHHHh
Confidence 47899999999999999999999986 99999986521 000000 01345667788
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCC--cEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASKTLLSATG--LIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~--~~~~~d~lvlAtG 123 (434)
.|++++.++.|.+++.........++ .++.+|.+++|+|
T Consensus 75 ~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 75 LGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp HTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred hcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 89999999999999754433333333 4799999999998
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.03 E-value=1.2e-08 Score=93.87 Aligned_cols=121 Identities=20% Similarity=0.274 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---------------CcEEECCEEEEcccCccChh--hh
Q 013914 206 DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---------------GRTLEADIVVVGVGGRPLIS--LF 268 (434)
Q Consensus 206 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---------------g~~~~~D~vi~a~G~~p~~~--~~ 268 (434)
.+...+.+..++.|+++..+..+.++...+++.+..+...+ +....++..+++.|.+.... ++
T Consensus 142 ~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li 221 (380)
T d2gmha1 142 HLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLY 221 (380)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHH
Confidence 34556666778888888888888888776666655544322 12456788888888654332 22
Q ss_pred hc-cccc---cCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 269 KG-QVAE---NKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 269 ~~-~~~~---~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
.. .... ..+++. .--+...+++..+||+++..++..+ +-+..|+..|+.||+.+....
T Consensus 222 ~~~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~~al 283 (380)
T d2gmha1 222 KKFDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIFNQL 283 (380)
T ss_dssp HHTTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHHHHH
Confidence 11 1100 111110 0012246899999999998766444 677889999999999886543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=99.02 E-value=8.4e-10 Score=99.05 Aligned_cols=57 Identities=26% Similarity=0.325 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCc
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGR 262 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~ 262 (434)
+..+...+.+.+++.|++++.+++|+++.. +++++..|.+++| +++||.||+|+|.-
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~-~~~~v~~V~T~~g-~i~a~~VV~aaG~~ 203 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQ-SGGRVTGVQTADG-VIPADIVVSCAGFW 203 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEE-ETTEEEEEEETTE-EEECSEEEECCGGG
T ss_pred hhhhhhhHHhhhhcccccccCCceEEEEEE-eCCEEEEEeccce-eEECCEEEEecchh
Confidence 567788888999999999999999999988 5677788998888 79999999999964
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.01 E-value=7.1e-10 Score=84.06 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++++|||||+.|+-+|..+.+......+|+++++.+... +.+... ......+.+++
T Consensus 18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il-------------------~~~d~~----~~~~~~~~l~~ 74 (117)
T d1feca2 18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL-------------------RGFDSE----LRKQLTEQLRA 74 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc-------------------ccccch----hhHHHHHHHhh
Confidence 4789999999999999988877643334599999986421 000000 01345667888
Q ss_pred cCcEEEcCCeeEEEECCCC---EEEccCCcEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASK---TLLSATGLIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~---~v~~~~~~~~~~d~lvlAtG 123 (434)
.|++++.++.+.++....+ .+.+++|.++.+|.+++|+|
T Consensus 75 ~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 75 NGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp TTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred CcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 9999999999999975432 47889999999999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.01 E-value=6e-10 Score=84.59 Aligned_cols=93 Identities=14% Similarity=0.255 Sum_probs=71.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+++++.+... |.+... ......+.+++
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~---Vtiv~~~~~ll-------------------~~~d~e----i~~~l~~~l~~ 75 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAE---VTVLEAMDKFL-------------------PAVDEQ----VAKEAQKILTK 75 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCc---eEEEEeecccC-------------------Ccccch----hHHHHHHHHHh
Confidence 47899999999999999999999987 99999986521 011000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEccCC---cEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASKT--LLSATG---LIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~~~---~~~~~d~lvlAtG 123 (434)
.|++++.++.++++..++.. +++.++ +++.+|++++|+|
T Consensus 76 ~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 76 QGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp TTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred cCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 99999999999999877664 444333 5789999999998
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.01 E-value=1.3e-09 Score=83.44 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=82.0
Q ss_pred CCCeEEecCHHHH-HHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHh
Q 013914 139 AKNIFYLREIDDA-DKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYAN 217 (434)
Q Consensus 139 ~~~v~~~~~~~~~-~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~ 217 (434)
.+++.++-+++.+ ..+ ++|.|+|||+|.++++.|..|.+...+|++++|.+.+-. ++... .+..+.
T Consensus 16 gkGVsyca~CDg~a~~f-------rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~ 82 (130)
T d1vdca2 16 NRGISACAVCDGAAPIF-------RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSN 82 (130)
T ss_dssp TTTEESCHHHHTTSGGG-------TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTC
T ss_pred CCcEEEEEEecCchHHh-------CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccC
Confidence 3788887766642 222 689999999999999999999999999999999988754 33333 333455
Q ss_pred cCcEEEcCCeEEEEEecCC-CcEEEEEeC---CC--cEEECCEEEEcc
Q 013914 218 KGIKIIKGTVAVGFTTNAD-GEVKEVKLK---DG--RTLEADIVVVGV 259 (434)
Q Consensus 218 ~GV~~~~~~~v~~i~~~~~-g~v~~v~~~---~g--~~~~~D~vi~a~ 259 (434)
..|++++++.+.++..+.. +.+..+.+. +| +++++|-+++++
T Consensus 83 ~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 83 PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp TTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred CceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 6799999999999998432 456666653 33 479999999875
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.00 E-value=1.6e-09 Score=94.68 Aligned_cols=137 Identities=23% Similarity=0.333 Sum_probs=86.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------cCC------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------LFT------ 204 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~~~------ 204 (434)
.++|||+|+.|+.+|..+++.|.+|.++++.. +... .++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 47999999999999999999999999998742 1100 001
Q ss_pred ------HHHHHHHHHHHHhcCcEEEcCCe-EE-----EEEecCCCcEEEEEeCCCcEEECCEEEEcccCcc-----Chhh
Q 013914 205 ------ADIAAFYEGYYANKGIKIIKGTV-AV-----GFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRP-----LISL 267 (434)
Q Consensus 205 ------~~~~~~~~~~l~~~GV~~~~~~~-v~-----~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p-----~~~~ 267 (434)
..+.+.+...+++.||+++.+.. +. .+...++.........+++++++|.+++|||.+| +.+.
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~~ 161 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTEN 161 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCTTTT
T ss_pred hhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCccccccccc
Confidence 11233345677889999987742 11 1111011111111112345799999999999998 3333
Q ss_pred h---hccccccCCcEEeCCCCCCCCCcEEEeccccccc
Q 013914 268 F---KGQVAENKGGIETDDFFKTSADDVYAVGDVATFP 302 (434)
Q Consensus 268 ~---~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~ 302 (434)
+ ..++..+++.+.+|+..+|.+.++|++||++...
T Consensus 162 ~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~~ 199 (259)
T d1onfa1 162 LKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMVK 199 (259)
T ss_dssp SSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEEC
T ss_pred cccccceeeecccccccccCCceeEeeEEEEEEeeehh
Confidence 3 2234457788999999999999999999998754
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.9e-09 Score=96.64 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=65.6
Q ss_pred HHHHHHHhcCcEEEcCCeEEEEEecCC------CcEEEEEe---CCCc--EEECCEEEEcccCccC-------h-----h
Q 013914 210 FYEGYYANKGIKIIKGTVAVGFTTNAD------GEVKEVKL---KDGR--TLEADIVVVGVGGRPL-------I-----S 266 (434)
Q Consensus 210 ~~~~~l~~~GV~~~~~~~v~~i~~~~~------g~v~~v~~---~~g~--~~~~D~vi~a~G~~p~-------~-----~ 266 (434)
.+.+.+++.+++++.++.+.++..+++ +++.++.. .+++ .+.++.||+|+|--.. . +
T Consensus 143 ~~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGD 222 (305)
T d1chua2 143 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGD 222 (305)
T ss_dssp CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCH
T ss_pred HHHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecc
Confidence 445667888999999999999876432 25666655 3443 4789999999993211 0 1
Q ss_pred ---h-hhccccc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 267 ---L-FKGQVAE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 267 ---~-~~~~~~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
+ +..+..+ +.++|.+|++.+|+.|++||+|+++.
T Consensus 223 G~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~ 261 (305)
T d1chua2 223 GIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred cEeeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence 1 1345555 67899999999999999999999754
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.96 E-value=5.6e-11 Score=101.52 Aligned_cols=119 Identities=21% Similarity=0.257 Sum_probs=68.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC---CCCCccCccccCCC-------CCCCCCCcccccCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP---YERPALSKAYLFPE-------GTARLPGFHVCVGSGG 74 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 74 (434)
++|+|||||||||++||.++++.|.+ |+|||++...+ +.+|..++.++... .......+........
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~---V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIP---TVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPR 81 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCC---EEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCc---EEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccce
Confidence 69999999999999999999999987 99999975311 11111122111100 0000000000000000
Q ss_pred -----------------CCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 75 -----------------ERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 75 -----------------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
...........+++++.+.... .+ ...+. .++..+.+|++++|||++|..+|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~-~~--~~~~~-~~~~~i~a~~viiAtG~~p~~lp 150 (220)
T d1lvla1 82 LDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKV-LD--GKQVE-VDGQRIQCEHLLLATGSSSVELP 150 (220)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEE-EE--TTEEE-ETTEEEECSEEEECCCEEECCBT
T ss_pred ehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecc-cC--ccccc-ccceeEeeceeeEcCCCCccccc
Confidence 0011233445678888874433 22 23332 34567999999999999987654
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=4.1e-10 Score=84.60 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=67.5
Q ss_pred CCCCCeeEEeccCceeEEeecCC--------CCEEE-----EcCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV--------GDTVL-----FGDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPE 402 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~--------~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~ 402 (434)
|+.+|++.++.|+++.+ |.++ +..+. +....+. .++.+|+|+++ ++++|||+|++|++++
T Consensus 1 Y~~vP~~vft~PeiA~V--GltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~ 78 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTV--GLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCD 78 (115)
T ss_dssp CTTCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcCccEEE--ecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHH
Confidence 56789999988887777 5553 11121 2221221 34678898877 5899999999999999
Q ss_pred HH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 403 EN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 403 ~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
|+ +.++.+|++++|++|+.++--+.+++++.
T Consensus 79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 110 (115)
T d3grsa3 79 EMLQGFAVAVKMGATKADFDNTVAIHPTSSEE 110 (115)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHHHcCCCHHHHhhCccCCCCHHHH
Confidence 96 99999999999999877777777776654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.95 E-value=2.6e-10 Score=94.98 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=71.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc-CCCCCCCCh
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV-GSGGERLLP 79 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (434)
|-..++||+||||||+|++||.+|+|.|++ ++|+|+........ ...+.......+.+++.... +........
T Consensus 1 m~~~~~~VvIIGgGpaGl~aA~~~ar~g~~---v~vie~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~el~~~~~ 74 (192)
T d1vdca1 1 LETHNTRLCIVGSGPAAHTAAIYAARAELK---PLLFEGWMANDIAP---GGQLTTTTDVENFPGFPEGILGVELTDKFR 74 (192)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEECCSSBTTBCT---TCGGGGCSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CCcccceEEEECCCHHHHHHHHHHHHcCCc---EEEEEeeccccccc---ccccccchhhhccccccccccchHHHHHHH
Confidence 444579999999999999999999999988 89999875432211 11111111112222221100 000011122
Q ss_pred hhHhhcCcEEEcCCeeEEEECCCCEEE-ccCCcEEEcceEEEecCCC
Q 013914 80 EWYKEKGIELILSTEIVRADIASKTLL-SATGLIFKYQILVIATGST 125 (434)
Q Consensus 80 ~~~~~~~v~~~~~~~v~~i~~~~~~v~-~~~~~~~~~d~lvlAtG~~ 125 (434)
+...+.++++..+ .|..++...+... ..+...+.+|.+++++|..
T Consensus 75 ~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 75 KQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120 (192)
T ss_dssp HHHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred HHHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence 3345678999876 7888887665322 2344578999999999964
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.94 E-value=9.8e-10 Score=83.92 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=69.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||||+.|+-+|..|++.|.+ |+++|+.+..- .+ .+. .. ......+.+++
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~---Vtlie~~~~~l-~~------~~d----~~-----------~~~~~~~~l~~ 84 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKK---VTVIDILDRPL-GV------YLD----KE-----------FTDVLTEEMEA 84 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSTT-TT------TCC----HH-----------HHHHHHHHHHT
T ss_pred CCEEEEECChHHHHHHHHHhhccceE---EEEEEecCccc-cc------ccc----hh-----------hHHHHHHHhhc
Confidence 46899999999999999999999987 99999986421 00 000 00 01234567778
Q ss_pred cCcEEEcCCeeEEEECCCC-EEEccCCcEEEcceEEEe
Q 013914 85 KGIELILSTEIVRADIASK-TLLSATGLIFKYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~-~v~~~~~~~~~~d~lvlA 121 (434)
.|++++.++.+.++..+.+ .....+++++++|.+++|
T Consensus 85 ~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~a 122 (123)
T d1nhpa2 85 NNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVA 122 (123)
T ss_dssp TTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEEC
T ss_pred CCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEE
Confidence 8999999999999987654 234668889999999987
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.94 E-value=1.6e-09 Score=82.03 Aligned_cols=94 Identities=16% Similarity=0.299 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..+.+.+.+..+|+++++.+..- +.+... ......+.+++
T Consensus 20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL-------------------~~~d~~----~~~~l~~~l~~ 76 (117)
T d1aoga2 20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL-------------------RGFDHT----LREELTKQLTA 76 (117)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh-------------------cccchH----HHHHHHHHHHh
Confidence 4789999999999999999988876556799999976421 111000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCCcEEEcceEEEe
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATGLIFKYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~~~d~lvlA 121 (434)
.|++++.++.+.+++... .++.+++|+++.+|.+++|
T Consensus 77 ~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A 116 (117)
T d1aoga2 77 NGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMA 116 (117)
T ss_dssp TTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred cCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence 999999999999997543 3578899999999999988
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.94 E-value=3.5e-10 Score=86.06 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=63.9
Q ss_pred CCCCCeeEEeccCceeEEeecCC------CCEEEEcC-----CCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN 404 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~ 404 (434)
|+.+|+++++.|+++.+ |.++ +..+..+. ..+. .+..+|+|+++ ++++|||++++|++++|+
T Consensus 1 Y~~iP~~vft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~el 78 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWV--GKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEM 78 (123)
T ss_dssp TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCCCCEEeecCCccEEE--ECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHH
Confidence 56789988888876665 6653 22222221 1111 34678999887 478999999999999996
Q ss_pred -HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 405 -KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 405 -~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+.++.||++++|++|+..+--+.++++
T Consensus 79 I~~~alai~~~~t~~~l~~~i~~hPT~s 106 (123)
T d1v59a3 79 IAEAGLALEYGASAEDVARVCHAHPTLS 106 (123)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCTTCTT
T ss_pred HHHHHHHHHcCCcHHHHHhcccCCCcHH
Confidence 999999999999997666555555544
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.93 E-value=4e-10 Score=85.73 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCCCeeEEeccCceeEEeecCC------CCEEEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN 404 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~ 404 (434)
|+.+|++.++.|+++.+ |.++ |..+... ...+. ....+|+|+++ ++|+|||+|++|++++|+
T Consensus 1 Y~~iP~~vft~PeiA~v--Glte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~el 78 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASV--GKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGEL 78 (123)
T ss_dssp TTSCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCCCCEEeecCCceEEE--ECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHH
Confidence 56789988887776655 6653 3222222 22111 35678999887 469999999999999996
Q ss_pred -HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 405 -KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 405 -~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
+.++.||++++|++|+..+..+.+++++
T Consensus 79 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE 107 (123)
T d1dxla3 79 IHEAAIALQYDASSEDIARVCHAHPTMSE 107 (123)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCTTH
T ss_pred HHHHHHHHHcCCcHHHHhhCCCCCCCHHH
Confidence 9999999999999988777666666543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.93 E-value=8.4e-10 Score=84.23 Aligned_cols=89 Identities=20% Similarity=0.349 Sum_probs=68.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+++|||||+.|+-+|..|++.|.+ |+|+++.+... + + ...+ .....+.+++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~l~---~-~---------d~~~-----------~~~~~~~l~~~ 85 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYH---VKLIHRGAMFL---G-L---------DEEL-----------SNMIKDMLEET 85 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCE---EEEECSSSCCT---T-C---------CHHH-----------HHHHHHHHHHT
T ss_pred CcEEEECCcHHHHHHHHHhhcccce---EEEEecccccc---C-C---------CHHH-----------HHHHHHHHHHC
Confidence 6899999999999999999999987 99999986421 0 0 0000 12356678889
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCC
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGS 124 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~ 124 (434)
|++++.++.+.+++.+ .+ +.++..+++|.+|+|+|.
T Consensus 86 GV~~~~~~~v~~~~~~--~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 86 GVKFFLNSELLEANEE--GV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp TEEEECSCCEEEECSS--EE-EETTEEEECSCEEEECCE
T ss_pred CcEEEeCCEEEEEeCC--EE-EeCCCEEECCEEEEEEEe
Confidence 9999999999887543 33 446778999999999994
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.93 E-value=2.9e-09 Score=96.99 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--CCCcEEECCEEEEcccCc--------cChhhh-hcccc---ccCCcE
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL--KDGRTLEADIVVVGVGGR--------PLISLF-KGQVA---ENKGGI 279 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--~~g~~~~~D~vi~a~G~~--------p~~~~~-~~~~~---~~~g~i 279 (434)
++++.|++++++++|++|..++++....+.. .++++++||.||+|++.. |..... ...+. ......
T Consensus 244 l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~~~~ 323 (370)
T d2iida1 244 MYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPYQFQ 323 (370)
T ss_dssp HHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTTHHH
T ss_pred HHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCccccc
Confidence 3567799999999999999855553333333 334689999999998632 211100 00000 000011
Q ss_pred EeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 280 ETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 280 ~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
..++.+.....+||.+||++..+. ..+..|+..|..||.+|-
T Consensus 324 ~~~~~~~~~~g~v~~aGd~~~~~~---------~~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 324 HFSDPLTASQGRIYFAGEYTAQAH---------GWIDSTIKSGLRAARDVN 365 (370)
T ss_dssp HHHHHHHCCBTTEEECSGGGSSSS---------SCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccCCEEEecccccCCC---------cccHHHHHHHHHHHHHHH
Confidence 111223334567999999886543 346678899999998874
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=1.5e-09 Score=88.19 Aligned_cols=89 Identities=13% Similarity=0.122 Sum_probs=71.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------cCCHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------LFTADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.+++|+|||+|+.|+++|..|++.|++|+++++.+.+... ....++.+.+.+.+++.||++++++.|+.
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~- 120 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA- 120 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS-
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc-
Confidence 5799999999999999999999999999999998765321 12346778888999999999999987632
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~ 266 (434)
+ . ...+|.||+|+|..|...
T Consensus 121 ----~----------~-~~~~d~vilAtG~~~~~~ 140 (179)
T d1ps9a3 121 ----D----------Q-LQAFDETILASGIPNRAL 140 (179)
T ss_dssp ----S----------S-SCCSSEEEECCCEECCTT
T ss_pred ----c----------c-cccceeEEEeecCCCccc
Confidence 1 1 246899999999877543
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.91 E-value=6.9e-09 Score=85.48 Aligned_cols=116 Identities=25% Similarity=0.353 Sum_probs=79.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
...+|||||||++|+.+|..|+++|.+ ..|+++++.+..++....+...+... ...... ..........
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~-v~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~ 70 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAG----KATAES------LYLRTPDAYA 70 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCC-SEEEEECSCCSCCBCSGGGGTTTTTT----CSCSGG------GBSSCHHHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCc-eEEEEecCccccchhhhHHHHHHHHh----hhhhhh------hhhhhhhhhc
Confidence 357999999999999999999999875 23444444443333322222111111 110000 1134455566
Q ss_pred hcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 84 EKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
..+..+..+..+..++.+...+...++.++.+|.+++++|.+|..|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~~~~ 117 (185)
T d1q1ra1 71 AQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPN 117 (185)
T ss_dssp HTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEEEEC
T ss_pred ccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccCCCC
Confidence 77888888888999999889999999999999999999999886554
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.4e-09 Score=84.82 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChh
Q 013914 5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~----~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
.++++|||||+.|+-+|..|++ .|.+ |+++++++..- . . .++.. ......+
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~---Vt~i~~~~~~l-~-----~---------~~~~~-------~~~~~~~ 91 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTE---VIQLFPEKGNM-G-----K---------ILPEY-------LSNWTME 91 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCE---EEEECSSSSTT-T-----T---------TSCHH-------HHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCE---EEEecccccCC-c-----c---------cCCHH-------HHHHHHH
Confidence 4689999999999999988864 3555 99999986421 0 0 00000 0123456
Q ss_pred hHhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecC
Q 013914 81 WYKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATG 123 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG 123 (434)
.+++.|++++.++.+.+++.++. .+.+.+|+++.+|.+++|+|
T Consensus 92 ~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred HHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 77889999999999999987655 47788999999999999998
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=8.1e-10 Score=82.90 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=65.0
Q ss_pred CCCCCeeEEeccCceeEEeecCC--------CCEEEE-----cCCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV--------GDTVLF-----GDNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPE 402 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~--------~~~~~~-----~~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~ 402 (434)
|+.+|++.++.|+++.+ |.++ +..+.. ....+. ..+.+|+|+++ ++++|||+|++|++++
T Consensus 1 Y~~vP~~vft~PeiA~V--Glte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~ 78 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTV--GLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD 78 (115)
T ss_dssp CSSCCEEECCSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHH
T ss_pred CCCCCeEecCCCccEEE--eCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHH
Confidence 56789999988887766 6553 111222 111111 23557888777 5799999999999999
Q ss_pred HH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 403 EN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 403 ~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
|+ +.++.+|++++|++|+.++--+.+++.+.
T Consensus 79 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 110 (115)
T d1gesa3 79 EMLQGFAVALKMGATKKDFDNTVAIHPTAAEE 110 (115)
T ss_dssp HHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHHHcCCcHHHHhcCcccCCcHHHH
Confidence 96 99999999999999777666666665543
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.89 E-value=2.1e-09 Score=81.12 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=69.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+|+|||||+.|+-+|..|++.|.+ |+|+++.+... +.+.. .......+.+++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~---Vtlv~~~~~il-------------------~~~d~----~~~~~~~~~l~~ 75 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGID---SYIFARGNRIL-------------------RKFDE----SVINVLENDMKK 75 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCE---EEEECSSSSSC-------------------TTSCH----HHHHHHHHHHHH
T ss_pred CCEEEEECCchHHHHHHHHHHhcccc---ceeeehhcccc-------------------ccccH----HHHHHHHHHHHh
Confidence 57899999999999999999999877 99999986421 00000 001345567788
Q ss_pred cCcEEEcCCeeEEEECCC---CEEEccCCcEE-EcceEEEe
Q 013914 85 KGIELILSTEIVRADIAS---KTLLSATGLIF-KYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~---~~v~~~~~~~~-~~d~lvlA 121 (434)
.|++++.++.++++.... .++.+.+|+.+ .+|.+++|
T Consensus 76 ~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~A 116 (117)
T d1onfa2 76 NNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYC 116 (117)
T ss_dssp TTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEEC
T ss_pred CCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEe
Confidence 899999999999997443 24778888877 57999988
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.86 E-value=2.3e-08 Score=88.72 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=84.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc----------------------------------c--CCHHH
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR----------------------------------L--FTADI 207 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~----------------------------------~--~~~~~ 207 (434)
-.|+|||+|++|+-+|..|.+.|.+|+++++.+.+... . -.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~ 87 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 87 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence 36899999999999999999999999999987543100 0 02467
Q ss_pred HHHHHHHHHhcCc--EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC--ccChh
Q 013914 208 AAFYEGYYANKGI--KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG--RPLIS 266 (434)
Q Consensus 208 ~~~~~~~l~~~GV--~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~--~p~~~ 266 (434)
.+++++..++.++ .++++++|+++..+++.....|++.++.++++|.+|+|+|. .|...
T Consensus 88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p 150 (298)
T d1w4xa1 88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTG 150 (298)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTH
T ss_pred HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCC
Confidence 7888999999998 59999999999865666667899999999999999999994 45443
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.85 E-value=2.5e-09 Score=91.00 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.|||+||||||||++||.++++.|.+ |+|||+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~k---V~vie~~~~ 37 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFK---TTCIEKRGA 37 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCC---EEEEECSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence 579999999999999999999999988 999999765
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.85 E-value=8.6e-10 Score=84.06 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=63.4
Q ss_pred CCCCCeeEEeccCceeEEeecCC------CCEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN 404 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~ 404 (434)
|+.+|+++++.|+++.+ |.++ +..+.....+ +. ....+|+|+++ ++++|||+|++|++++|+
T Consensus 1 Y~~vP~~vft~PeiA~V--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~el 78 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGV--GKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAEL 78 (124)
T ss_dssp TTCCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHH
T ss_pred CCcCCeEecCcCceeEe--ehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHH
Confidence 56789988888876665 6653 2222222111 11 35678999887 579999999999999996
Q ss_pred -HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 405 -KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 405 -~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+.++.+|++++|++|+..+.-+.+++.
T Consensus 79 I~~~~~ai~~~~t~~~l~~~i~~hPT~s 106 (124)
T d3lada3 79 VQQGAIAMEFGTSAEDLGMMVFAHPALS 106 (124)
T ss_dssp HHHHHHHHHHTCBHHHHHTSCCCSSCSH
T ss_pred HHHHHHHHHcCCCHHHHHhCCccCCCHH
Confidence 999999999999996666555444443
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.85 E-value=2.9e-09 Score=81.37 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=64.6
Q ss_pred CCCCCeeEEeccCceeEEeecCC------CCEEEEcC-----CCcc----cCCCcEEEEEE--eCCEEEEEEEecCCHHH
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV------GDTVLFGD-----NDLA----SATHKFGTYWI--KDGKVVGVFLESGTPEE 403 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~-----~~~~----~~~~~~~~~~~--~~~~ilG~~~~g~~~~~ 403 (434)
|..+|+.+++.|+++.+ |.++ +..+.... .... .....++|+++ ++|+|||+|++|++++|
T Consensus 1 y~~VP~aVfT~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~E 78 (128)
T d1feca3 1 HTKVACAVFSIPPMGVC--GYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPE 78 (128)
T ss_dssp CSSCCEEECCSSCEEEE--ECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHH
T ss_pred CCCCCEEecCCCcceEE--ECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHH
Confidence 56789999988888776 6554 32222211 1111 12344677766 57999999999999999
Q ss_pred H-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 404 N-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 404 ~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
+ +.++.+|++++|+.|+..+.-+.+++.+.
T Consensus 79 lI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 109 (128)
T d1feca3 79 IIQSVAICLKMGAKISDFYNTIGVHPTSAEE 109 (128)
T ss_dssp HHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred HHHHHHHHHHcCCcHHHHhcCcCCCCcHHHH
Confidence 6 99999999999999777666666666553
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.84 E-value=1.5e-09 Score=82.92 Aligned_cols=88 Identities=8% Similarity=0.160 Sum_probs=64.4
Q ss_pred CCCeeEEeccCceeEEeecCC------CCEEEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-H
Q 013914 343 YLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-K 405 (434)
Q Consensus 343 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~ 405 (434)
.+|+++++.|+++.+ |.++ +..+... ...+. .++.+|+|+++ ++|+|||+|++|++++|+ +
T Consensus 3 ~IP~~vft~PeiA~V--Glte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~ 80 (128)
T d1ojta3 3 VIPGVAYTSPEVAWV--GETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIG 80 (128)
T ss_dssp CCCEEECSSSCEEEE--ECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHH
T ss_pred cCCEeecCCCceeee--eccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHH
Confidence 578988888887666 6553 2222222 21111 35678999877 479999999999999996 9
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 406 AIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 406 ~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
.++.||++++|++|+..+.-+.++|.+
T Consensus 81 ~~~lai~~~~t~~~l~~~i~~hPT~sE 107 (128)
T d1ojta3 81 EVCLAIEMGCDAADIGKTIHPHPTLGE 107 (128)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCSSSSTT
T ss_pred HHHHHHHcCCCHHHHhhCcCcCCCHHH
Confidence 999999999999977777666666654
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.84 E-value=2.2e-09 Score=81.17 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=63.8
Q ss_pred CCCCCeeEEeccCceeEEeecCC----------CCEE---EEcCCCcc-------cCCCcEEEEEE--eCCEEEEEEEec
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV----------GDTV---LFGDNDLA-------SATHKFGTYWI--KDGKVVGVFLES 398 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~----------~~~~---~~~~~~~~-------~~~~~~~~~~~--~~~~ilG~~~~g 398 (434)
|+.+|+++++.|+++.+ |.++ +..+ .+...... ....+|+++++ ++++|||+|++|
T Consensus 1 Y~~vP~~vfT~PeiA~V--Glte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG 78 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTI--GLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG 78 (119)
T ss_dssp CSSCCEEECCSSCEEEE--ECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred CCcCCeEeccCCccEEE--ECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeC
Confidence 57799999998888776 6553 1111 11111111 23457788776 679999999999
Q ss_pred CCHHHH-HHHHHHHHcCCCCCChhhhhccCCCccc
Q 013914 399 GTPEEN-KAIAKVARVQPSVESLDVLKNEGLSFAS 432 (434)
Q Consensus 399 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 432 (434)
++++|+ +.++.||++++|++|+..+--+.+++++
T Consensus 79 ~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE 113 (119)
T d1onfa3 79 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAE 113 (119)
T ss_dssp TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTT
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHH
Confidence 999996 9999999999999966666665555554
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=2.4e-09 Score=88.27 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=66.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.|||+||||||+|++||.++++.|++ |+|||++... .+........++.+....+......+....++
T Consensus 1 ~yDViIIGgGpaGl~AAi~aar~G~~---v~iie~~~gg---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (184)
T d1fl2a1 1 AYDVLIVGSGPAGAAAAIYSARKGIR---TGLMGERFGG---------QILDTVDIENYISVPKTEGQKLAGALKVHVDE 68 (184)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCC---EEEECSSTTG---------GGGGCCEECCBTTBSSEEHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCe---EEEEEEecCC---------cccccccceeccccchhhhHHHHHHHHHHhhh
Confidence 38999999999999999999999987 9999986310 01111111122222111110001122333455
Q ss_pred cCcEEEcCCeeEEEECCC-----CEEEccCCcEEEcceEEEecCCCc
Q 013914 85 KGIELILSTEIVRADIAS-----KTLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~-----~~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
.+.+......+..+.... +.....+..++..+.+++++|..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (184)
T d1fl2a1 69 YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL 115 (184)
T ss_dssp SCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred eeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence 677777776666665432 123445566899999999999643
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.84 E-value=3.3e-09 Score=93.77 Aligned_cols=105 Identities=18% Similarity=0.172 Sum_probs=70.1
Q ss_pred CcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh---hcccc-------ccCCcEEeC----CC
Q 013914 219 GIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF---KGQVA-------ENKGGIETD----DF 284 (434)
Q Consensus 219 GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~---~~~~~-------~~~g~i~vd----~~ 284 (434)
+..++.++.+..+....++ ..+++.+|+.+++|.+++++......... ...+. ...+...++ +.
T Consensus 224 ~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~~~~~~~~ 301 (347)
T d1b5qa1 224 DPRLQLNKVVREIKYSPGG--VTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGVNRYEYDQ 301 (347)
T ss_dssp CTTEESSCCEEEEEECSSC--EEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTCCHHHHHH
T ss_pred ccccccccccccccccCcc--EEEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccccccchhh
Confidence 5678889999999873333 56889999999999999987632211100 00000 011222222 34
Q ss_pred CCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHhccC
Q 013914 285 FKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATE 333 (434)
Q Consensus 285 ~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (434)
++++.++||++||+++...+ ..+..|..+|+.||+.|++..
T Consensus 302 ~~~~~~~v~~~GD~~~~~~~--------~~~~gA~~sG~~aA~~l~~~~ 342 (347)
T d1b5qa1 302 LRAPVGRVYFTGEHTSEHYN--------GYVHGAYLSGIDSAEILINCA 342 (347)
T ss_dssp HHCCBTTEEECSGGGCSSCT--------TSHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCEEEEEccccCcCC--------CHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999876544 456778889999999987653
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.82 E-value=3.6e-08 Score=71.06 Aligned_cols=86 Identities=22% Similarity=0.314 Sum_probs=71.5
Q ss_pred cCCCCCCeeEEeccCceeEEeecCCCCE--EE-EcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCC
Q 013914 339 TGYDYLPYFYSRAFDLSWQFYGDNVGDT--VL-FGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQP 415 (434)
Q Consensus 339 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~ 415 (434)
.+|..+|+|||.+++..++.+|...+.. +. .+..+ ...|..+++++|+++|+..+| .+.++..+..+|+.+.
T Consensus 3 ~~y~~vP~FWSdQ~d~~iq~~G~~~~~~~~v~~~~~~~----~~~f~~~y~~~g~lvgv~~vn-~~~~~~~~rrli~~~~ 77 (97)
T d1d7ya3 3 PGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLD----APKFTLIELQKGRIVGATCVN-NARDFAPLRRLLAVGA 77 (97)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECSCCSEEEEEEECCSS----SCEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcEEeccCCCeeEEEecCCCCCEEEEeccCCC----CCeEEEEEEeCCEEEEEEEeC-CHHHHHHHHHHHHCCC
Confidence 6799999999999999999999876532 22 23322 467888999999999999997 5888999999999999
Q ss_pred CCCChhhhhccCCCc
Q 013914 416 SVESLDVLKNEGLSF 430 (434)
Q Consensus 416 ~~~~~~~l~~~~~~~ 430 (434)
++ +.+.|.|+.++.
T Consensus 78 ~~-~~~~LaD~~~~L 91 (97)
T d1d7ya3 78 KP-DRAALADPATDL 91 (97)
T ss_dssp CC-CHHHHHSSCCHH
T ss_pred CC-CHHHhcCCCCCH
Confidence 88 788999988764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.81 E-value=1.1e-08 Score=77.78 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+++++.+... + .+... ......+.+++
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~~---vt~i~~~~~~l---~----------------~~d~~----~~~~~~~~l~~ 75 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGRR---TVMLVRTEPLK---L----------------IKDNE----TRAYVLDRMKE 75 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCTTT---T----------------CCSHH----HHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcchh---heEeeccchhh---c----------------ccccc----hhhhhhhhhhc
Confidence 36899999999999999999999876 99999986421 0 00000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCC----EE---EccCCcEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASK----TL---LSATGLIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~----~v---~~~~~~~~~~d~lvlAtG 123 (434)
.+++++.++.+..+..+.+ .+ ...+++++++|.+++|+|
T Consensus 76 ~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 76 QGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp TTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred cccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 9999999999999987643 11 223456799999999998
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.80 E-value=3.4e-09 Score=92.74 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=71.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC--CCCC-ccCc---------cccCCCCCCCCCCccccc
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP--YERP-ALSK---------AYLFPEGTARLPGFHVCV 70 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~--~~~~-~~~~---------~~~~~~~~~~~~~~~~~~ 70 (434)
....+|+|||||++|+++|..|+++|++ |+|+||++... +... .++. +............+....
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~~---v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 78 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAGVD---VDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD 78 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCC---EEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEe
Confidence 3467999999999999999999999987 99999976421 1110 0000 000000000000000000
Q ss_pred CC----------CCCC-----CChhh-HhhcCcEEEcCCeeEEEECCCC--EEEccCCcEEEcceEEEecCCCc
Q 013914 71 GS----------GGER-----LLPEW-YKEKGIELILSTEIVRADIASK--TLLSATGLIFKYQILVIATGSTV 126 (434)
Q Consensus 71 ~~----------~~~~-----~~~~~-~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~~~~~~d~lvlAtG~~~ 126 (434)
.. .... ..... ....+..+..++.++.++.... +++++||.++++|.+|.|.|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s 152 (265)
T d2voua1 79 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 152 (265)
T ss_dssp TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred ccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence 00 0000 00111 1234678899999999987655 46678999999999999999654
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=1.6e-09 Score=81.65 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=62.7
Q ss_pred CCCCeeEEeccCceeEEeecCC------CCEEEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-
Q 013914 342 DYLPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN- 404 (434)
Q Consensus 342 ~~~p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~- 404 (434)
+.+|+.+++.|+++.+ |.++ |..+..+ ...+. ..+.+|+|+++ ++++|||+|++|++++|+
T Consensus 2 r~iP~~vft~PeiA~v--Glte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI 79 (118)
T d1xdia2 2 RTVAATVFTRPEIAAV--GVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELI 79 (118)
T ss_dssp GGCEEEECSSSEEEEE--ESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHH
T ss_pred CCCCEEecCCChheee--hhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHH
Confidence 3578888887776655 6553 3223222 22221 34678999887 468999999999999996
Q ss_pred HHHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 405 KAIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 405 ~~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
+.++.||++++|++|+.++.-+.+++.
T Consensus 80 ~~~~~ai~~~~t~~~l~~~i~~hPT~s 106 (118)
T d1xdia2 80 LPIAVAVQNRITVNELAQTLAVYPSLS 106 (118)
T ss_dssp HHHHHHHHHTCBHHHHHTSBCCSSSTH
T ss_pred HHHHHHHHcCCCHHHHhhCCCCCCCHH
Confidence 999999999999997766655555554
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.78 E-value=3e-09 Score=79.70 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=61.5
Q ss_pred CCeeEEeccCceeEEeecCC------CCEEEEc-----CCCcc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-HH
Q 013914 344 LPYFYSRAFDLSWQFYGDNV------GDTVLFG-----DNDLA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-KA 406 (434)
Q Consensus 344 ~p~~~~~~~~~~~~~~g~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~ 406 (434)
+|++.++.|+++.+ |.++ |..+..+ ...+. .+..+|+|+++ ++++|||+|++|++++|+ +.
T Consensus 2 vP~~vft~PeiA~V--Glte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~ 79 (115)
T d1ebda3 2 IPAVVFSDPECASV--GYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAE 79 (115)
T ss_dssp CCEEECSSSCEEEE--ECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHH
T ss_pred cCeEecCCCceEEE--eCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHH
Confidence 68888887877666 6553 3222222 21111 35678999877 479999999999999996 99
Q ss_pred HHHHHHcCCCCCChhhhhccCCCcc
Q 013914 407 IAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 407 ~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
++.+|++++|++|+.++.-+.+++.
T Consensus 80 ~~~ai~~~~t~~~l~~~i~~hPT~s 104 (115)
T d1ebda3 80 LGLAIEAGMTAEDIALTIHAHPTLG 104 (115)
T ss_dssp HHHHHHHTCBHHHHHHSCCCTTSST
T ss_pred HHHHHHcCCCHHHHhhCCCCCCCHH
Confidence 9999999999996666655555544
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.78 E-value=2.5e-08 Score=78.80 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=67.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
.+++|+|||||.+|+|+|..+.+.|. .|++++|.+..-... .. .-...+...++++++...+.++.. .+++..
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a-~~----~~~~~a~~~~~~~~~~~~~~ei~~-~~~~~~ 117 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VP----EEVELAKEEKCEFLPFLSPRKVIV-KGGRIV 117 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CH----HHHHHHHHTTCEEECSEEEEEEEE-ETTEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhcc-ch----hheeecccccceeEeccccEEEEe-cCCceE
Confidence 36789999999999999999999985 588998877653321 22 222345668899999988888876 344444
Q ss_pred EEEe------CCC---------cEEECCEEEEcccC
Q 013914 241 EVKL------KDG---------RTLEADIVVVGVGG 261 (434)
Q Consensus 241 ~v~~------~~g---------~~~~~D~vi~a~G~ 261 (434)
.+.. ++| .+++||.|++|+|.
T Consensus 118 ~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 118 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 4332 222 35899999999983
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.78 E-value=7.2e-09 Score=78.34 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=67.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+|+|+.+... +.+... ......+.+++
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~---Vtlve~~~~il-------------------~~~d~~----~~~~l~~~l~~ 75 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTK---VTILEGAGEIL-------------------SGFEKQ----MAAIIKKRLKK 75 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSSSSS-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCccceeeeeeecccccE---EEEEEecceec-------------------ccccch----hHHHHHHHHHh
Confidence 47999999999999999999999987 99999986521 000000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEc-cCC--cEEEcceEEEe
Q 013914 85 KGIELILSTEIVRADIASKT--LLS-ATG--LIFKYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~-~~~--~~~~~d~lvlA 121 (434)
.|++++.++.+++++...+. +.. .++ +++.+|.+++.
T Consensus 76 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 76 KGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp TTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred cCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 99999999999999866543 333 233 46899999873
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.78 E-value=1.1e-09 Score=93.96 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=59.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhhc
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEK 85 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
.+|+|||||||||+||.+|++.+. ..+|+|+|+.+.+. +++............. .......++...
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~g--------G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 67 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPF--------GLVRFGVAPDHPEVKN-----VINTFTQTARSD 67 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSC--------THHHHTSCTTCGGGGG-----HHHHHHHHHTST
T ss_pred CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCC--------ceehhhcccccccccc-----chhhhhhhhhcC
Confidence 589999999999999999998753 34599999987532 1111000000000000 001234455667
Q ss_pred CcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcc
Q 013914 86 GIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVL 127 (434)
Q Consensus 86 ~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~ 127 (434)
++++..++.+. .+ +...+ -.-.||.+++|||+.+.
T Consensus 68 ~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 68 RCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDK 102 (230)
T ss_dssp TEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEE
T ss_pred CeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeecccc
Confidence 88888876541 11 11100 01258999999999754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=6.6e-09 Score=79.46 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=68.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++++|||||+.|+-+|..|++.|.+ |+++++++... +.+... ......+.+++
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~~---Vtlv~~~~~~l-------------------~~~d~~----~~~~~~~~l~~ 75 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGSK---TSLMIRHDKVL-------------------RSFDSM----ISTNCTEELEN 75 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSC-------------------TTSCHH----HHHHHHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCcE---EEEEeeccccc-------------------cchhhH----HHHHHHHHHHH
Confidence 47899999999999999999999986 99999986521 000000 01345677788
Q ss_pred cCcEEEcCCeeEEEECCCCEEE-----ccCC------cEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASKTLL-----SATG------LIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~-----~~~~------~~~~~d~lvlAtG 123 (434)
.|++++.++.+.++......+. ...| ....+|.+++|+|
T Consensus 76 ~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 76 AGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp TTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred CCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 9999999999999976554322 2233 2467999999998
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.75 E-value=2.2e-09 Score=93.88 Aligned_cols=38 Identities=13% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
++.||+||||||++|+.+|..+++.|.+ |++||+.+..
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~k---v~vve~~~~l 77 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMGGR---QLIVDRWPFL 77 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSS
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCe---EEEEeccCcc
Confidence 3579999999999999999999999987 9999998653
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.75 E-value=2.8e-09 Score=80.87 Aligned_cols=87 Identities=10% Similarity=0.028 Sum_probs=61.9
Q ss_pred CCCeeEEeccCceeEEeecCC------CCEEEEcCCC-----cc---cCCCcEEEEEE--eCCEEEEEEEecCCHHHH-H
Q 013914 343 YLPYFYSRAFDLSWQFYGDNV------GDTVLFGDND-----LA---SATHKFGTYWI--KDGKVVGVFLESGTPEEN-K 405 (434)
Q Consensus 343 ~~p~~~~~~~~~~~~~~g~~~------~~~~~~~~~~-----~~---~~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~ 405 (434)
.+|++.++.|+++.+ |.++ |..+.....+ +. ..+.+|+|+++ ++++|||++++|++++|+ +
T Consensus 3 ~iP~vvft~PeiA~V--Glte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~ 80 (123)
T d1lvla3 3 AIAAVCFTDPEVVVV--GKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELST 80 (123)
T ss_dssp CCCEEECSSSEEEEE--ECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHH
T ss_pred CCCEEEeCCCccEEE--ECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHH
Confidence 578888888876666 6553 3323222221 11 34667898877 469999999999999996 9
Q ss_pred HHHHHHHcCCCCCChhhhhccCCCcc
Q 013914 406 AIAKVARVQPSVESLDVLKNEGLSFA 431 (434)
Q Consensus 406 ~~~~~i~~~~~~~~~~~l~~~~~~~~ 431 (434)
.++.+|++++|++|+..+.-+.+++.
T Consensus 81 ~~~lai~~~~t~~~l~~~i~~hPT~s 106 (123)
T d1lvla3 81 AFAQSLEMGACLEDVAGTIHAHPTLG 106 (123)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCTTCTT
T ss_pred HHHHHHHcCCCHHHHhcCCCCCCCHH
Confidence 99999999999996665555555444
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.74 E-value=9.7e-09 Score=78.23 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..+++.|.+ |+++|+.+... +.+... ......+.+++
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~---Vtive~~~~il-------------------~~~d~~----~~~~l~~~l~~ 79 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSR---LDVVEMMDGLM-------------------QGADRD----LVKVWQKQNEY 79 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCE---EEEECSSSSSS-------------------TTSCHH----HHHHHHHHHGG
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCE---EEEEEeecccc-------------------ccchhh----HHHHHHHHHHH
Confidence 47899999999999999999999987 99999986421 000000 01345667778
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEcc--CC--cEEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIASKT--LLSA--TG--LIFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~~--~~--~~~~~d~lvlAtG 123 (434)
.|++++.++.+.++...... +.+. ++ +++.+|.+++|+|
T Consensus 80 ~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 80 RFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp GEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred cCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 89999999999998866543 3332 23 3799999999998
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=8e-08 Score=69.92 Aligned_cols=86 Identities=16% Similarity=0.366 Sum_probs=72.1
Q ss_pred cCCCCCCeeEEeccCceeEEeecCCC--CEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCC
Q 013914 339 TGYDYLPYFYSRAFDLSWQFYGDNVG--DTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 416 (434)
Q Consensus 339 ~~~~~~p~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~ 416 (434)
.+++.+|+|||.+++..++.+|...+ +.+..|+.. ..+|..+++++|+++|+..+| .+.++..+..+|..+..
T Consensus 2 p~~~~vP~FWSdQ~d~~lQ~~G~~~~~d~~v~rg~~~----~~~f~~~y~~~~~lvav~~vn-~~~~~~~~r~li~~~~~ 76 (103)
T d1q1ra3 2 PRDEAAPWFWSDQYEIGLKMVGLSEGYDRIIVRGSLA----QPDFSVFYLQGDRVLAVDTVN-RPVEFNQSKQIITDRLP 76 (103)
T ss_dssp CCCCCCCEEEEEETTEEEEEEECCTTCSEEEEEEETT----TTEEEEEEEETTEEEEEEEES-CHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCcEeeecCCCeeEEEECCCCCceEEEecCCC----CCeEEEEEEeCCeEEEEEEeC-CHHHHHHHHHHHHCCCC
Confidence 45678999999999999999998764 345555544 567888999999999999997 57888999999999998
Q ss_pred CCChhhhhccCCCc
Q 013914 417 VESLDVLKNEGLSF 430 (434)
Q Consensus 417 ~~~~~~l~~~~~~~ 430 (434)
+ +.+.|.++.++.
T Consensus 77 ~-~~~~L~D~~~~L 89 (103)
T d1q1ra3 77 V-EPNLLGDESVPL 89 (103)
T ss_dssp C-CHHHHTCTTSCH
T ss_pred c-CHHHhcCCCCCH
Confidence 8 788999998875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=1.4e-08 Score=77.20 Aligned_cols=91 Identities=15% Similarity=0.312 Sum_probs=66.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..|++.|.+ |+|+++++... |.+... ........+++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~---Vtii~~~~~~l-------------------~~~d~e----i~~~l~~~l~~ 76 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSK---VTVVEFQPQIG-------------------ASMDGE----VAKATQKFLKK 76 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSSSSS-------------------SSSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcc---eeEEEeccccc-------------------hhhhhh----hHHHHHHHHHh
Confidence 57999999999999999999999987 99999986521 010000 01345677788
Q ss_pred cCcEEEcCCeeEEEECCC--CEE--EccCC-----cEEEcceEEEe
Q 013914 85 KGIELILSTEIVRADIAS--KTL--LSATG-----LIFKYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~--~~v--~~~~~-----~~~~~d~lvlA 121 (434)
.|++++.++.+.++.... ..+ ...++ +++.+|.+++|
T Consensus 77 ~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 77 QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 999999999999887543 233 33322 37899999987
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=5e-09 Score=91.36 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCC-CcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTNAD-GEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~-g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
...+.+.+.+.+++.|++++++++|++|..+++ +++..| +.+|++++||.||+...+-|+
T Consensus 235 ~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 235 LGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp TTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence 345788888999999999999999999976444 455544 467889999999986555553
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=2.2e-08 Score=75.95 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=64.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-.|..|++.|.+ |+|++++...+ .+... ........+++
T Consensus 20 P~~vvIIGgG~iG~E~A~~l~~lG~~---Vtii~~~~~l~--------------------~~D~~----~~~~l~~~l~~ 72 (122)
T d1h6va2 20 PGKTLVVGASYVALECAGFLAGIGLD---VTVMVRSILLR--------------------GFDQD----MANKIGEHMEE 72 (122)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSSST--------------------TSCHH----HHHHHHHHHHH
T ss_pred CCeEEEECCCccHHHHHHHHhhcCCe---EEEEEechhhc--------------------cCCHH----HHHHHHHHHHH
Confidence 46899999999999999999999987 99998763211 11000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCC----C--EEEccC--C-c--EEEcceEEEecC
Q 013914 85 KGIELILSTEIVRADIAS----K--TLLSAT--G-L--IFKYQILVIATG 123 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~----~--~v~~~~--~-~--~~~~d~lvlAtG 123 (434)
.|++++.++.++++.... . .+.... + + ...+|.+++|+|
T Consensus 73 ~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 73 HGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp TTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred CCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 999999998888775322 1 233222 2 2 457899999998
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=1.5e-09 Score=93.54 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=94.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC----CCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVK----PGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPE 80 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~----~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
.++|+|||||||||+||.+|+++|++ ..+|+|+|+.+... +++..... |.+... .........
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G--------G~~~~gi~---p~~~~~--~~~~~~~~~ 68 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW--------GLVRSGVA---PDHPKI--KSISKQFEK 68 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS--------THHHHTSC---TTCTGG--GGGHHHHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC--------CeeeeccC---cccccc--hhhhhhhhh
Confidence 46999999999999999999999842 23599999987632 11111100 110000 000112233
Q ss_pred hHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCcccccCCCCCCCCCCCe-EEecCHHHH---HHHHH
Q 013914 81 WYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNI-FYLREIDDA---DKLVE 156 (434)
Q Consensus 81 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~g~~~~~v-~~~~~~~~~---~~~~~ 156 (434)
++...++++..+..+. +.+..++ ....||++++|||+.+..+..++.+....... ......... .....
T Consensus 69 ~~~~~g~~~~~~~~v~------~~~~~~~-~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (239)
T d1lqta2 69 TAEDPRFRFFGNVVVG------EHVQPGE-LSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVG 141 (239)
T ss_dssp HHTSTTEEEEESCCBT------TTBCHHH-HHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECT
T ss_pred hhccCCceEEEEEEec------cccchhh-hhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccce
Confidence 4456688888875431 1111111 12469999999998765554322222110000 000000000 00000
Q ss_pred HHHhCCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEc
Q 013914 157 AIKAKKNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 157 ~l~~~~~~~v~ViG~g~~~~e~a~~l~~-~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
... ..++++|+|++..+++++..+.. .|.. ........ ..........+.+.++++++..
T Consensus 142 ~~~--~g~~~vv~g~g~~a~d~a~~~v~vig~g----~~~~~~~~--~~~~~~~~~~~~l~~~~v~~v~ 202 (239)
T d1lqta2 142 WIK--RGPTGVIGTNKKDAQDTVDTLIKNLGNA----KEGAECKS--FPEDHADQVADWLAARQPKLVT 202 (239)
T ss_dssp HHH--HCSCSCTTHHHHHHHHHHHHHHHHHHHH----HHTTCSCC--C--CHHHHHHHHHHHHCTTCEE
T ss_pred eec--CCCEEEEeCCCchHHHHHHHHHhhccCC----cccccccc--ccccchhHHHHHHHhcCCCccC
Confidence 000 25677888889999988876532 1110 00001111 2233344555666677776654
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.5e-08 Score=89.31 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=33.3
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|-...+||+|||+|+|||+||.++++++. ..+|+|+||...
T Consensus 1 m~~~~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~~ 41 (311)
T d1kf6a2 1 MQTFQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVYP 41 (311)
T ss_dssp CEEEECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSCG
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCCC
Confidence 33447999999999999999999999742 334999999864
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=5e-09 Score=80.66 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCCCeeEEeccCceeEEeecCC-------C-CE---EEEcCCCcc------cCCCcEEEEEE---eCCEEEEEEEecCC
Q 013914 341 YDYLPYFYSRAFDLSWQFYGDNV-------G-DT---VLFGDNDLA------SATHKFGTYWI---KDGKVVGVFLESGT 400 (434)
Q Consensus 341 ~~~~p~~~~~~~~~~~~~~g~~~-------~-~~---~~~~~~~~~------~~~~~~~~~~~---~~~~ilG~~~~g~~ 400 (434)
|+.+|+.+++.|+++.+ |.++ + +. +.....+.. .....+.+.++ ++++|||+|++|++
T Consensus 1 Y~~VP~~vfT~PeiA~V--Glte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~ 78 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCC--GLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPN 78 (133)
T ss_dssp CSSCCEEECSSSCEEEE--ECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTT
T ss_pred CCCCCEEecCcchheeE--eCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCC
Confidence 67899999998888776 6553 1 11 111111100 12334444333 57999999999999
Q ss_pred HHHH-HHHHHHHHcCCCCCChhhhhccCCCcccc
Q 013914 401 PEEN-KAIAKVARVQPSVESLDVLKNEGLSFASK 433 (434)
Q Consensus 401 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~~~ 433 (434)
++|+ +.++.+|++++|+.|+..+--+.+++++.
T Consensus 79 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~ 112 (133)
T d1h6va3 79 AGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEI 112 (133)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHH
Confidence 9996 99999999999999777777666666553
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.63 E-value=1.5e-09 Score=92.54 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+||||||||||||++||.++++.|.+ |+|||+...
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~k---V~vIEk~~~ 37 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQK---VTIVEKGNL 37 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCE---EEEEecCCC
Confidence 69999999999999999999999987 999999864
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.60 E-value=4e-07 Score=82.23 Aligned_cols=101 Identities=20% Similarity=0.106 Sum_probs=74.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCccCCc---------------------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN--IDVSMVYPEPWCMPR--------------------------------------- 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g--~~v~lv~~~~~~~~~--------------------------------------- 201 (434)
-|+|+|||+|++|+-+|..|.+.+ .+|+++++.+.+...
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 479999999999999999998766 599999998764200
Q ss_pred ------------------------cC--CHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCC---Cc---E
Q 013914 202 ------------------------LF--TADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKD---GR---T 249 (434)
Q Consensus 202 ------------------------~~--~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~---g~---~ 249 (434)
.+ ..++.+.+....+..+..++++++|++++..+++ ..|++.+ ++ +
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~--w~Vt~~~~~~~~~~~~ 161 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS--WVVTYKGTKAGSPISK 161 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE--EEEEEEESSTTCCEEE
T ss_pred hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCE--EEEEEEecCCCCeEEE
Confidence 00 1356777777777888899999999999884333 3444433 22 4
Q ss_pred EECCEEEEcccC--ccCh
Q 013914 250 LEADIVVVGVGG--RPLI 265 (434)
Q Consensus 250 ~~~D~vi~a~G~--~p~~ 265 (434)
..+|.||+|+|. .|+.
T Consensus 162 ~~~d~VI~AtG~~s~p~~ 179 (335)
T d2gv8a1 162 DIFDAVSICNGHYEVPYT 179 (335)
T ss_dssp EEESEEEECCCSSSSBCC
T ss_pred EEeeEEEEccccccccee
Confidence 569999999994 4443
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.58 E-value=4.1e-08 Score=74.61 Aligned_cols=91 Identities=16% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
..+++|||||+.|+-+|..+++.|.+ |+|+++++... + .+... ........+++
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~---Vtvi~~~~~~l---~----------------~~d~~----~~~~l~~~l~~ 78 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSE---VTVVEFASEIV---P----------------TMDAE----IRKQFQRSLEK 78 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCE---EEEECSSSSSS---T----------------TSCHH----HHHHHHHHHHH
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCe---EEEEEEccccC---c----------------hhhhc----chhhhhhhhhc
Confidence 46899999999999999999999987 99999986521 0 00000 01345677888
Q ss_pred cCcEEEcCCeeEEEECCCCE--EEc---cCC--cEEEcceEEEe
Q 013914 85 KGIELILSTEIVRADIASKT--LLS---ATG--LIFKYQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~--v~~---~~~--~~~~~d~lvlA 121 (434)
.|++++.++.+.+++..... +.+ .++ .++.+|++++|
T Consensus 79 ~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 79 QGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp SSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred ccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 99999999999999865543 222 233 35899999987
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.58 E-value=1.5e-06 Score=75.27 Aligned_cols=102 Identities=20% Similarity=0.355 Sum_probs=76.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc-----CCHHHHHHHHH-----------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL-----FTADIAAFYEG----------------------- 213 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~-----~~~~~~~~~~~----------------------- 213 (434)
..++|+|||+|+.|+-+|..|++.|.+|+++++.+...... +.+...+.+.+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 36799999999999999999999999999999876543210 12222111111
Q ss_pred ----------------------HHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccCh
Q 013914 214 ----------------------YYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 214 ----------------------~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.-...++.++++..+.++....++ ..++++||+++++|++|.|.|.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~dG~~~~~d~~v~adG~~s~~ 154 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET--VQMRFSDGTKAEANWVIGADGGASVV 154 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC--EEEEETTSCEEEESEEEECCCTTCHH
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc--eEEEECCCCEEEEEEEeccccccccc
Confidence 223457889999999999874444 57899999999999999999975543
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.4e-08 Score=86.97 Aligned_cols=38 Identities=34% Similarity=0.407 Sum_probs=34.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|.++|||+||||||||++||.+|++.|.+ |+|||+.+.
T Consensus 2 m~~~yDviVIG~GpAGl~aA~~aa~~G~k---V~lie~~~~ 39 (233)
T d1v59a1 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFN---TACVEKRGK 39 (233)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSS
T ss_pred CCcccCEEEECCCHHHHHHHHHHHHCCCc---EEEEEecCC
Confidence 56789999999999999999999999988 999998755
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=2.1e-07 Score=78.75 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=83.1
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHH-------hCCCCcEEEECCCHHHHHHHHHHHhC--------------------
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIK-------AKKNGKAVVVGGGYIGLELSAALKIN-------------------- 185 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~~v~ViG~g~~~~e~a~~l~~~-------------------- 185 (434)
+|||.+.+++++..++ ..+.+... ...+++|+|||+|..|+++|..+.+.
T Consensus 5 ~IPGedl~gV~~A~df---l~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~ 81 (225)
T d1cjca1 5 DIPGEELPGVFSARAF---VGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS 81 (225)
T ss_dssp CCTTTTSTTEEEHHHH---HHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred CCCCCCCCCcEeHHHH---HHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence 4899999999965443 33332111 11479999999999999999999873
Q ss_pred C-CeEEEEccCCccCCccCCHHHHH-----------------------------------HHHHHH--------------
Q 013914 186 N-IDVSMVYPEPWCMPRLFTADIAA-----------------------------------FYEGYY-------------- 215 (434)
Q Consensus 186 g-~~v~lv~~~~~~~~~~~~~~~~~-----------------------------------~~~~~l-------------- 215 (434)
| .+|+++.|....-..+..+++.+ .+.+.+
T Consensus 82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
T d1cjca1 82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS 161 (225)
T ss_dssp CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence 4 68999998765432222222211 111111
Q ss_pred HhcCcEEEcCCeEEEEEecCCC-cEEEEEeC---------------CC--cEEECCEEEEcccC
Q 013914 216 ANKGIKIIKGTVAVGFTTNADG-EVKEVKLK---------------DG--RTLEADIVVVGVGG 261 (434)
Q Consensus 216 ~~~GV~~~~~~~v~~i~~~~~g-~v~~v~~~---------------~g--~~~~~D~vi~a~G~ 261 (434)
...++.+++.....++..++++ ++..+++. .| .+++||+||.|+|+
T Consensus 162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 1246889999999999885554 56555441 12 25899999999995
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.55 E-value=2.8e-08 Score=86.59 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=34.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
||..++||||||||++||++|++|+++|.+ |+||||+..
T Consensus 2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~---V~vier~~~ 40 (268)
T d1c0pa1 2 MMHSQKRVVVLGSGVIGLSSALILARKGYS---VHILARDLP 40 (268)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESSCT
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHHCCCC---EEEEeCCCC
Confidence 555678999999999999999999999987 999999753
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.53 E-value=4.1e-08 Score=76.35 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=45.0
Q ss_pred CCCcEEEEEE--eCCEEEEEEEecCCHHHH-HHHHHHHHcCCCCCChhhhh--ccCCCcc
Q 013914 377 ATHKFGTYWI--KDGKVVGVFLESGTPEEN-KAIAKVARVQPSVESLDVLK--NEGLSFA 431 (434)
Q Consensus 377 ~~~~~~~~~~--~~~~ilG~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~l~--~~~~~~~ 431 (434)
...+|+|+++ ++++|||+|++|++++|+ +.++.+|++++|++|+..+. -+.++|+
T Consensus 65 ~~~G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~ 124 (140)
T d1mo9a3 65 HMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHF 124 (140)
T ss_dssp GGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCH
T ss_pred CCCceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChH
Confidence 4567999888 579999999999999996 99999999999999777663 2345544
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.50 E-value=4.9e-08 Score=74.35 Aligned_cols=89 Identities=16% Similarity=0.057 Sum_probs=61.5
Q ss_pred CCeeEEeccCceeEEeecCC------CC---EEEE--cCCCcc--cCCCcEEEEEE--eCCEEEEEEEecCC-HHH-HHH
Q 013914 344 LPYFYSRAFDLSWQFYGDNV------GD---TVLF--GDNDLA--SATHKFGTYWI--KDGKVVGVFLESGT-PEE-NKA 406 (434)
Q Consensus 344 ~p~~~~~~~~~~~~~~g~~~------~~---~~~~--~~~~~~--~~~~~~~~~~~--~~~~ilG~~~~g~~-~~~-~~~ 406 (434)
+.++...+|++.+..+|.++ +. ...+ .+.... ...++|+|+++ ++++|||+|++|++ +.+ ++.
T Consensus 3 ~gt~~~~vfd~eiasvGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~ 82 (126)
T d1nhpa3 3 QGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINA 82 (126)
T ss_dssp CCCEEEEETTEEEEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHH
T ss_pred ccCeEEeEcCccEEEecccHHHHHHCCCCEEEEEEecCcchhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHH
Confidence 34566778899999999885 21 1111 111111 23457888877 56899999999965 777 599
Q ss_pred HHHHHHcCCCCCChhhhhcc-CCCccc
Q 013914 407 IAKVARVQPSVESLDVLKNE-GLSFAS 432 (434)
Q Consensus 407 ~~~~i~~~~~~~~~~~l~~~-~~~~~~ 432 (434)
++.||+.++|++||..+.-+ .++|.+
T Consensus 83 ~~~ai~~~~t~~dL~~~~~~yhPt~se 109 (126)
T d1nhpa3 83 ISLAIQAKMTIEDLAYADFFFQPAFDK 109 (126)
T ss_dssp HHHHHHTTCBHHHHHTCCCCCCTTTCC
T ss_pred HHHHHHcCCCHHHHhcCcccCCCCCch
Confidence 99999999999977665543 356554
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=9.4e-08 Score=86.30 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.+||+|||+|+|||+||.+++++|.+ |+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~---V~lleK~~~ 41 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQT---CALLSKVFP 41 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCC---CEEECSSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCe---EEEEeCCCC
Confidence 469999999999999999999999987 999999764
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.44 E-value=3.5e-07 Score=80.28 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-cCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAK-QGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~~V~vie~~~~~ 43 (434)
+.+||+|||||++||+||.+|++ .|++ |+|||+++..
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~---V~vlE~~~~~ 69 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQ---VAIIEQSVSP 69 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSC---EEEEESSSSC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCe---EEEEecCCCC
Confidence 36899999999999999999987 4887 9999998754
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.38 E-value=1.2e-07 Score=80.73 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..|||+|||||||||+||.+|++.|++ |+|||+.+.
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~~G~~---V~viE~~~~ 40 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAADEGLK---VAIVERYKT 40 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSSC
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCe---EEEEeccCC
Confidence 369999999999999999999999987 999999764
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=3.2e-06 Score=70.48 Aligned_cols=95 Identities=20% Similarity=0.281 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc-c---------C---Ccc----CC------HHHHHHHHHHHH-hcCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW-C---------M---PRL----FT------ADIAAFYEGYYA-NKGI 220 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~-~---------~---~~~----~~------~~~~~~~~~~l~-~~GV 220 (434)
.|+|||+|+.|+|+|...++.|.++.+++.... + . +.. .+ ......+++.++ ..++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 589999999999999999999999999975411 1 0 000 00 012223334443 3478
Q ss_pred EEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccC
Q 013914 221 KIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGG 261 (434)
Q Consensus 221 ~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~ 261 (434)
.++.+. |.++.. +++++..|.+.+|.++.|..||++||.
T Consensus 84 ~i~q~~-V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGT 122 (230)
T d2cula1 84 HLFQAT-ATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGS 122 (230)
T ss_dssp EEEECC-EEEEEE-ETTEEEEEEETTSCCEECSEEEECCTT
T ss_pred HHHhcc-ceeeEe-cccceeeEEeccccEEEEeEEEEccCc
Confidence 888765 566655 477888999999999999999999994
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=1.5e-07 Score=83.50 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
|+||||||||++|++||..|++.|.+ |+|+|+++..+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~---V~iiEk~~~iG 37 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKK---VLVIEKRNHIG 37 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCC---EEEECSSSSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCc---EEEEECCCCcc
Confidence 48999999999999999999999987 99999998754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.32 E-value=2.2e-07 Score=81.57 Aligned_cols=36 Identities=22% Similarity=0.415 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.||+|||||+|||+||..|+++|+++ |+|+|+++..
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~--V~vlE~~~~~ 36 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITD--LLILEATDHI 36 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCC--EEEECSSSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCc--EEEEECCCCC
Confidence 48999999999999999999999633 9999998764
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.29 E-value=1.2e-05 Score=70.05 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=97.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCCccCCcc----CCHHHHHH---------------------------
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNI-DVSMVYPEPWCMPRL----FTADIAAF--------------------------- 210 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~~~~~~~----~~~~~~~~--------------------------- 210 (434)
|-+|+|||+|+.|+-+|..|++.|. +|+++++.+.+.... +.+...+.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 80 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCC
Confidence 3579999999999999999999995 999999987653210 11111111
Q ss_pred -----------------------------HH--HHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCC----cEEECCEE
Q 013914 211 -----------------------------YE--GYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDG----RTLEADIV 255 (434)
Q Consensus 211 -----------------------------~~--~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g----~~~~~D~v 255 (434)
+. ......++.+.++++++.+...+++ ..+.+.+| +++.+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~~~ad~v 158 (288)
T d3c96a1 81 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR--VLIGARDGHGKPQALGADVL 158 (288)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE--EEEEEEETTSCEEEEEESEE
T ss_pred CEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc--EEEEEEcCCCCeEEEeecee
Confidence 11 1223457889999999988874444 35566555 47899999
Q ss_pred EEcccCccChhhhhccccccCCcEEeCCCCCCCCCcEEEecccccccccccCcceecccHHHHHHHHHHHHHHHh
Q 013914 256 VVGVGGRPLISLFKGQVAENKGGIETDDFFKTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIM 330 (434)
Q Consensus 256 i~a~G~~p~~~~~~~~~~~~~g~i~vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 330 (434)
|.|-|....+.-..... ...............+...||++....+..+ .....|...+...+..+.
T Consensus 159 i~ADG~~S~vr~~~~~~----~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g-----~G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 159 VGADGIHSAVRAHLHPD----QRPLRDPLPHWGRGRITLLGDAAHLMYPMGA-----NGASQAILDGIELAAALA 224 (288)
T ss_dssp EECCCTTCHHHHHHCTT----CCCCCCCCSCCCBTTEEECTHHHHCCCSSTT-----CTHHHHHHHHHHHHHHHH
T ss_pred eccCCccceeeeeeccc----cccccccccccccCcceecccccceeCCccc-----cchhhhhhhHHHHHHHHh
Confidence 99999754332211100 0001111122356689999999987655433 234455566666555553
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.29 E-value=3.6e-07 Score=75.58 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.++|+|||||++||+||.+|+++|+++ |+|+|+++..
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~--V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSD--ITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCC--EEEEESSSSC
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCe--EEEEEecCcc
Confidence 579999999999999999999999843 9999998753
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.27 E-value=2.9e-07 Score=67.85 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCeEEecCHHHHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcC
Q 013914 140 KNIFYLREIDDADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKG 219 (434)
Q Consensus 140 ~~v~~~~~~~~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~G 219 (434)
..+++.+.+.+...+ .+|+|+|||+|.+|+++|..|+..+.+++++.+.+..... ..+
T Consensus 16 G~i~Hs~~y~~~~~f-------~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~---------------~~~ 73 (107)
T d2gv8a2 16 GSVLHSSLFREPELF-------VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ---------------NES 73 (107)
T ss_dssp TSEEEGGGCCCGGGG-------TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB---------------CSS
T ss_pred ccEEECCcCcchhhc-------CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc---------------ccc
Confidence 356666544443332 6899999999999999999999999888877766544321 112
Q ss_pred cEEEcCCeEEEEEecCCCcEEEEEeCCCcEEE-CCEEEEc
Q 013914 220 IKIIKGTVAVGFTTNADGEVKEVKLKDGRTLE-ADIVVVG 258 (434)
Q Consensus 220 V~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~-~D~vi~a 258 (434)
+... ..+.+++. +++ .+.+.||+.++ .|.||+|
T Consensus 74 ~~~~--~~i~~~~~--~~~--~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 74 LQQV--PEITKFDP--TTR--EIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp EEEE--CCEEEEET--TTT--EEEETTTEEECCCSEEEEC
T ss_pred ceec--CCeeEEec--CCC--EEEEcCCCEEeCCCEEEEC
Confidence 2222 34666665 342 58899998887 6999987
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.26 E-value=1.1e-06 Score=73.67 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCCCCCCCCeEEecCHHHHHHHHHHHHh-------CCCCcEEEECCCHHHHHHHHHHH--------------------hC
Q 013914 133 GVEGADAKNIFYLREIDDADKLVEAIKA-------KKNGKAVVVGGGYIGLELSAALK--------------------IN 185 (434)
Q Consensus 133 ~~~g~~~~~v~~~~~~~~~~~~~~~l~~-------~~~~~v~ViG~g~~~~e~a~~l~--------------------~~ 185 (434)
+|||.+.+++++..++ ..+.+.... ..+++|+|||+|..|+++|..+. +.
T Consensus 5 ~IPGedl~gV~~A~df---l~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~ 81 (216)
T d1lqta1 5 NIPGEDLPGSIAAVDF---VGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR 81 (216)
T ss_dssp CCTTTTSTTEEEHHHH---HHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred CCCCCCCCCcEeHHHH---HHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhc
Confidence 4899999999965443 333321111 14789999999999999998876 44
Q ss_pred C-CeEEEEccCCc
Q 013914 186 N-IDVSMVYPEPW 197 (434)
Q Consensus 186 g-~~v~lv~~~~~ 197 (434)
| .+|+++.|...
T Consensus 82 ~~~~V~iv~RRg~ 94 (216)
T d1lqta1 82 GIQEVVIVGRRGP 94 (216)
T ss_dssp CCCEEEEECSSCG
T ss_pred CCceEEEEEECCh
Confidence 5 57999988654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.26 E-value=2.6e-07 Score=82.66 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++|+|||||+|||+||++|+++|++ |+|+|+++..+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~---V~vlE~~~~~G 37 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLN---VTVFEAEGKAG 37 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCE---EEEECSSSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC---EEEEeCCCCCc
Confidence 6899999999999999999999987 99999987643
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.2e-07 Score=83.66 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++.||||||||+|||+||+.|+++|++ |+|+|+++..+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~---V~VlEa~~r~G 41 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMD---VTLLEARDRVG 41 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCE---EEEECSSSSSB
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCC---EEEEeCCCCCc
Confidence 567899999999999999999999987 99999998743
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.25 E-value=3.1e-07 Score=83.05 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
+.++|+|||||++||+||.+|+++|++ |+|+|+++..
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~---V~vlE~~~~~ 65 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQ---VTVLEASERP 65 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCE---EEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC---EEEEeCCCCC
Confidence 357999999999999999999999987 9999998764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.17 E-value=6.3e-07 Score=79.95 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=34.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAP 44 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~ 44 (434)
++++|+|||||++||+||..|++.|.+ |+|+|+++..+
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~---V~viEk~~~iG 38 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQ---VHIIDQRDHIG 38 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCE---EEEEESSSSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCC---EEEEECCCCCc
Confidence 357899999999999999999998876 99999998754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.13 E-value=9.3e-07 Score=77.99 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChhhhhccccccCCcEEeC
Q 013914 205 ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLISLFKGQVAENKGGIETD 282 (434)
Q Consensus 205 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~~~~~~~~~~~g~i~vd 282 (434)
..+.+.+.+.+++.+..++...........+++.+......+|+ ++.||+||-|-|.+....-. +..
T Consensus 103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S~vR~~---i~~-------- 171 (292)
T d1k0ia1 103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQS---IPA-------- 171 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCSTGGG---SCG--------
T ss_pred HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCCcccce---eee--------
Confidence 45667777888888888888877666654334443322335554 57899999999976543311 100
Q ss_pred CCCCCCCCcEEEeccccccccc
Q 013914 283 DFFKTSADDVYAVGDVATFPMK 304 (434)
Q Consensus 283 ~~~~t~~~~iya~GD~~~~~~~ 304 (434)
-.......+.+||++....+
T Consensus 172 --~~~~~~~~~~~~~~~~~~~p 191 (292)
T d1k0ia1 172 --ERMQHGRLFLAGDAAHIVPP 191 (292)
T ss_dssp --GGSEETTEEECGGGTEECCG
T ss_pred --ccccccccccceeeeeecCC
Confidence 01124567788888765443
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=98.12 E-value=8.1e-07 Score=81.38 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=34.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
|..+|||||||+|++|+.+|.+|++.|++ |+|+|+...
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~k---VlvLEaG~~ 38 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYK---VAMFDIGEI 38 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCe---EEEEecCCC
Confidence 45689999999999999999999999987 999999754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.06 E-value=9.3e-06 Score=69.70 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 58999999999999999999999999999987653
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.06 E-value=2.9e-06 Score=71.99 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=44.0
Q ss_pred cccccCCCCCCCCCCCeEEecCHH-HHHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 126 VLRLTDFGVEGADAKNIFYLREID-DADKLVEAIKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 126 ~~~~~~~~~~g~~~~~v~~~~~~~-~~~~~~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
|+.|+++|++... ..+++..++. +.. ...+|+|+|||+|.+|+++|..+++.+.+++++.+.+.
T Consensus 2 P~iP~~pG~e~F~-G~v~HS~~~~~~~~-------~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 2 PQLPNFPGLKDFA-GNLYHTGNWPHEPV-------DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCCCCTTGGGCC-SEEEEGGGCCSSCC-------CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCCChhhCC-CcEEecCcCCCCCC-------CCCCCEEEEECCCccHHHHHHHHHhhhccccccccccc
Confidence 6666644433333 3455554432 111 22689999999999999999999999999888766543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.03 E-value=5.2e-06 Score=65.60 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=53.2
Q ss_pred CcEEEE--CCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 6 FKYVIL--GGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 6 ~dvvII--G~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
..++|+ |||+.|+.+|..|+++|.+ |+++++.+.... .+. . .........+.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~---Vtlv~~~~~~~~-------~~~-~---------------~~~~~~~~~l~ 93 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHE---VTIVSGVHLANY-------MHF-T---------------LEYPNMMRRLH 93 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCE---EEEEESSCTTTH-------HHH-T---------------TCHHHHHHHHH
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCe---EEEEecCCcccc-------ccc-h---------------hHHHHHHHHHh
Confidence 455555 9999999999999999987 999999864221 000 0 00123456677
Q ss_pred hcCcEEEcCCeeEEEECCCCEE
Q 013914 84 EKGIELILSTEIVRADIASKTL 105 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~v 105 (434)
+.|++++.++.+.++..+...+
T Consensus 94 ~~GV~i~~~~~v~~i~~~~v~l 115 (156)
T d1djqa2 94 ELHVEELGDHFCSRIEPGRMEI 115 (156)
T ss_dssp HTTCEEEETEEEEEEETTEEEE
T ss_pred hccceEEeccEEEEecCcceEE
Confidence 8899999999999998654433
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=3.5e-05 Score=68.20 Aligned_cols=86 Identities=26% Similarity=0.414 Sum_probs=62.4
Q ss_pred HHHhcCcEEEcCCeEEEEEecCCCcEEEEEe---CCCc--EEECCEEEEcccC-----ccCh--h--------h-hhccc
Q 013914 214 YYANKGIKIIKGTVAVGFTTNADGEVKEVKL---KDGR--TLEADIVVVGVGG-----RPLI--S--------L-FKGQV 272 (434)
Q Consensus 214 ~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~---~~g~--~~~~D~vi~a~G~-----~p~~--~--------~-~~~~~ 272 (434)
..+..+|+++.++.+.++.. +++++.++.. .+|+ .+.++.||+|||- ...+ . + +..+.
T Consensus 144 ~~~~~~v~i~~~~~v~~Ll~-d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~aGa 222 (311)
T d1kf6a2 144 SLQFPQIQRFDEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSHGV 222 (311)
T ss_dssp HTTCTTEEEEETEEEEEEEE-ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTC
T ss_pred HHccCcceeEeeeEeeeeEe-cCCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhccc
Confidence 33445899999999999977 4677776653 5664 4579999999992 2211 1 1 13444
Q ss_pred cc-cCCcEEeCCCCCCCCCcEEEeccccc
Q 013914 273 AE-NKGGIETDDFFKTSADDVYAVGDVAT 300 (434)
Q Consensus 273 ~~-~~g~i~vd~~~~t~~~~iya~GD~~~ 300 (434)
.+ +-.+|.++++..+..+++|+.+++..
T Consensus 223 ~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 223 PLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp CEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred ceeecccccccccchhcccCCCcCcceee
Confidence 44 66789999999999999999999875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.99 E-value=2.3e-06 Score=74.82 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
.||+|||||+|||++|..|+++|..+ |+|+|+.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~--V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGK--VTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE--EEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCe--EEEEeCCCCC
Confidence 58999999999999999999999632 9999998763
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=9.3e-06 Score=64.54 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.1
Q ss_pred hhhHhhcCcEEEcCCeeEEEECCCCEEEccCC-cEEEcceEEEecC
Q 013914 79 PEWYKEKGIELILSTEIVRADIASKTLLSATG-LIFKYQILVIATG 123 (434)
Q Consensus 79 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~-~~~~~d~lvlAtG 123 (434)
...++..+++++.++.+..++.+...+...+. ..+.+|.+|+|+|
T Consensus 115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~G 160 (162)
T d1ps9a2 115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAG 160 (162)
T ss_dssp HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCC
T ss_pred HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCC
Confidence 34566789999999999999866555544333 3589999999999
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=4e-06 Score=71.03 Aligned_cols=128 Identities=15% Similarity=0.064 Sum_probs=78.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCccCC---------ccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKIN--NIDVSMVYPEPWCMP---------RLFTADIAAFYEGYYANKGIKIIKGTVAVGFT 232 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~--g~~v~lv~~~~~~~~---------~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~ 232 (434)
.+|+|||+|+.|+.+|..|.+. |.+|+++++.+.+.. ......+.......+++.|++++.++.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR-- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence 3899999999999999999765 789999999887531 112335556677788899999998886521
Q ss_pred ecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhhhccccc-cCCcEEeCCCCCC-CCCcEEEeccccccc
Q 013914 233 TNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQVAE-NKGGIETDDFFKT-SADDVYAVGDVATFP 302 (434)
Q Consensus 233 ~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~-~~g~i~vd~~~~t-~~~~iya~GD~~~~~ 302 (434)
+-. ...+ .-.+|.+++|+|..+........... ....+......+. ..+..+..|+.....
T Consensus 80 ---~~~--~~~l----~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (230)
T d1cjca2 80 ---DVT--VQEL----QDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGP 142 (230)
T ss_dssp ---TBC--HHHH----HHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCT
T ss_pred ---ccc--HHHH----HhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCc
Confidence 100 0001 12489999999976543322211111 1111111111112 466778877765543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.94 E-value=0.00025 Score=61.75 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3799999999999999999999999999998864
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.91 E-value=4.4e-06 Score=75.65 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-----HcCCCCCcEEEEeCCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFA-----KQGVKPGELAIISKEAVA 43 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~-----~~g~~~~~V~vie~~~~~ 43 (434)
..|||+||||||+|+++|..|+ +.|++ |+|||+.+..
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~---v~vlEr~~~~ 47 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLK---VRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCC---EEEECSSSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCc---EEEEcCCCCC
Confidence 3599999999999999999996 45777 9999998653
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.87 E-value=4.8e-06 Score=74.06 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--CCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--GVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--g~~~~~V~vie~~~~~ 43 (434)
.+||+||||||||++||.+|+++ |++ |+|+|+++..
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~---~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLK---VCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSC---EEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCe---EEEEEcCCCC
Confidence 57999999999999999999975 666 9999998764
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.81 E-value=2.6e-05 Score=60.91 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+|||||||..|+-+|.++.++|.+. |+++.+.+.
T Consensus 45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~--V~vi~rr~~ 80 (153)
T d1gtea3 45 RGAVIVLGAGDTAFDCATSALRCGARR--VFLVFRKGF 80 (153)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCSE--EEEECSSCG
T ss_pred CCEEEEECCChhHHHHHHHHHHcCCcc--eeEEEeCCh
Confidence 358999999999999999999998654 888887643
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.79 E-value=9.1e-06 Score=73.60 Aligned_cols=35 Identities=40% Similarity=0.531 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHH----cCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAK----QGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~----~g~~~~~V~vie~~~~ 42 (434)
.+||||||+|+|||+||++|++ .|.+ |+||||...
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~---V~vieK~~~ 59 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLK---VTLVEKAAV 59 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCC---EEEECSSCT
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCE---EEEEeCCCC
Confidence 4899999999999999999986 4665 999999864
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=0.00028 Score=62.74 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
.|+|||+|..|+-+|..+++.|.+|+++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999999999999998753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.73 E-value=2.9e-06 Score=72.08 Aligned_cols=98 Identities=15% Similarity=0.084 Sum_probs=59.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------CHHHHHHHHHHHHhcCcEEEcCCeEEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------TADIAAFYEGYYANKGIKIIKGTVAVGF 231 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~~~~~~~~~~~l~~~GV~~~~~~~v~~i 231 (434)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+..... ...........+.+.+..... ..+
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 123 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKE----SQL 123 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTT----CEE
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhccee----eee
Confidence 478999999999999999999999999999999887643210 012222333333332211110 011
Q ss_pred EecCCCcEEEEEeCCCcEEECCEEEEcccCccChhh
Q 013914 232 TTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISL 267 (434)
Q Consensus 232 ~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~ 267 (434)
.. ... .+...+..++.+|.+|+|||..+....
T Consensus 124 ~~-~~~---~~~~~~~~~~~~d~vviAtG~~~~~~~ 155 (233)
T d1djqa3 124 AL-GQK---PMTADDVLQYGADKVIIATGASECTLW 155 (233)
T ss_dssp EC-SCC---CCCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred ec-ccc---cccchhhhhhccceeeeccCCCccccc
Confidence 11 011 112222335679999999998776553
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.67 E-value=1.4e-05 Score=72.88 Aligned_cols=35 Identities=17% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+||||||+|++|+.+|.+|++.|++ |+|+|+..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~ 40 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIP---TQIVEMGR 40 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCe---EEEEeCCC
Confidence 368999999999999999999999987 99999974
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.67 E-value=1.6e-05 Score=72.06 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.||+||||+|+||+.+|.+|++.|.+ |+|||+...
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~~---VlvLEaG~~ 36 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGKK---VLLLERGGP 36 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCC---EEEECSSCC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCe---EEEEEccCC
Confidence 369999999999999999999999886 999999853
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.60 E-value=2.5e-05 Score=70.93 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||||||+|++|+.+|.+|++.|++ |+|||+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~---VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQ---TLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCC---EEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCe---EEEEecCCC
Confidence 4899999999999999999999987 999999754
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.48 E-value=3.8e-05 Score=70.34 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+.||+||||||+||+..|.+|++.+ .+ |+|||+...
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~---VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIK---VLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCC---EEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCe---EEEEcCCCC
Confidence 4699999999999999999999986 45 999999864
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.00018 Score=53.97 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh-
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK- 83 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (434)
.++|+|||+|.+++-.|..|++...+ |+++.+.+...- .....+.+.
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~---V~li~r~~~~~~-----------------------------~~~~~~~~~~ 77 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEH---VTLLEFAPEMKA-----------------------------DQVLQDKLRS 77 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSE---EEEECSSSSCCS-----------------------------CHHHHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCc---eEEEeccccccc-----------------------------cccccccccc
Confidence 57999999999999999999997544 999988753110 011222333
Q ss_pred hcCcEEEcCCeeEEEECCCCE---EEcc---CC--cEEEcceEEEecC
Q 013914 84 EKGIELILSTEIVRADIASKT---LLSA---TG--LIFKYQILVIATG 123 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~---v~~~---~~--~~~~~d~lvlAtG 123 (434)
..+++++.++.+..+.-++.. +.+. ++ .++..|.++++.|
T Consensus 78 ~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 78 LKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp CTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred ccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 347999999999988865432 3332 23 3689999999987
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=0.00011 Score=64.89 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=34.0
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCcc
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKI--NNIDVSMVYPEPWC 198 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~--~g~~v~lv~~~~~~ 198 (434)
+.......|+|||+|+.|+.+|..|++ .|.+|+++++.+.+
T Consensus 45 ~~~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 45 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp HHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred cccccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 333345679999999999999999985 49999999988664
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.00026 Score=58.85 Aligned_cols=115 Identities=26% Similarity=0.372 Sum_probs=70.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc------------------------------c-C---CccCCH-----
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW------------------------------C-M---PRLFTA----- 205 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~------------------------------~-~---~~~~~~----- 205 (434)
-++|||+|+.|+++|..+++.|.+|.++++... + . ...++.
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 489999999999999999999999999986431 0 0 000111
Q ss_pred -------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccChhhh----hccccc
Q 013914 206 -------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLF----KGQVAE 274 (434)
Q Consensus 206 -------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~~~~~----~~~~~~ 274 (434)
.+.....+.+++.||+++.+... ... ... ..+. ....++.++.+++++|.+|....- ..++.+
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~--~~~--~~~-~~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~L 158 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAA--FTS--DPK-PTIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLSL 158 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCE--ECS--CSS-CEEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTTG
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeee--ecc--ccc-eeee-eeccccccceeEEecCccccCCCccccCCCCcCc
Confidence 12233445678899999877532 111 111 1222 233478899999999977765321 112333
Q ss_pred cCCcEEeCCCC
Q 013914 275 NKGGIETDDFF 285 (434)
Q Consensus 275 ~~g~i~vd~~~ 285 (434)
+..+|.+|+..
T Consensus 159 ~~~gv~~~~~G 169 (221)
T d3grsa1 159 NKLGIQTDDKG 169 (221)
T ss_dssp GGTTCCBCTTS
T ss_pred hhcCcEECCCc
Confidence 44556666544
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.43 E-value=4.4e-05 Score=69.79 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQG-VKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~~~~V~vie~~~~ 42 (434)
+.||+||||||.||+..|.+|++.+ .+ |+|||+...
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~---VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNIS---VLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCC---EEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCe---EEEECCCCC
Confidence 3599999999999999999999875 45 999999854
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.35 E-value=2.6e-05 Score=66.27 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=27.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCC---CcEEEEeCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKP---GELAIISKE 40 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~---~~V~vie~~ 40 (434)
+|+|||||++|+++|++|+++|.+. .+++++++.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~ 38 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR 38 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence 6999999999999999999999762 135566555
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=97.33 E-value=3.7e-05 Score=69.31 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.||+||||+|+||+.+|.+|++. .+ |+|||+.+.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae~-~k---VLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSEK-YK---VLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTTT-SC---EEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcCC-CC---EEEEecCCC
Confidence 48999999999999999999975 65 999999853
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.0001 Score=62.21 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=65.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CeEEEEccCCccCC--------c-cCCHHHHHHHHHHHHhcCcEEEcCC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINN-------IDVSMVYPEPWCMP--------R-LFTADIAAFYEGYYANKGIKIIKGT 226 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g-------~~v~lv~~~~~~~~--------~-~~~~~~~~~~~~~l~~~GV~~~~~~ 226 (434)
|.+|+|||+|++|+.+|..|.+.| .+|+++++.+.+.. . .....+.+.....+.+.|++++++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 579999999999999999999987 58999999876532 1 1234556677778899999999997
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 227 VAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 227 ~v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
.+..... .+ .-...+|.+++|+|..+.
T Consensus 82 ~v~~~~~----------~~-~~~~~~~~v~~atGa~~~ 108 (239)
T d1lqta2 82 VVGEHVQ----------PG-ELSERYDAVIYAVGAQSR 108 (239)
T ss_dssp CBTTTBC----------HH-HHHHHSSEEEECCCCCEE
T ss_pred Eeccccc----------hh-hhhccccceeeecCCCcc
Confidence 6522110 00 012358999999997543
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00088 Score=50.01 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=62.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|-+++-.|..|++...+ |+++-|.+.+.-. . .. .....+...
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~~~~-----~---------~~-----------~~~~~~~~~ 77 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIASE---VHLIHRRDGFRAE-----K---------IL-----------IKRLMDKVE 77 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSSE---EEEECSSSSCCCC-----H---------HH-----------HHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCc---EEEEeecccccch-----h---------HH-----------HHHHHHhhc
Confidence 357999999999999999999997655 9999887531100 0 00 011122233
Q ss_pred hcCcEEEcCCeeEEEECCCCE---EEccCC------cEEEcceEEEecC
Q 013914 84 EKGIELILSTEIVRADIASKT---LLSATG------LIFKYQILVIATG 123 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~~---v~~~~~------~~~~~d~lvlAtG 123 (434)
..++.++.++.+..+.-++.. |.+.+. +++..|.++++.|
T Consensus 78 ~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 78 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp TSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred ccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 467888888888888876542 444321 4689999999876
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.24 E-value=0.00069 Score=49.02 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHhh
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKE 84 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.++|+|||+|.+|.-.|..|++...+ ++++.+.+.... . .
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~---v~~~~~r~~~~~-----------------~--------------------~ 71 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKH---PIYQSLLGGGDI-----------------Q--------------------N 71 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCS---SEEEECTTCCSC-----------------B--------------------C
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCE---EEEEEecCcccc-----------------c--------------------c
Confidence 47899999999999999999987654 566655432100 0 0
Q ss_pred cCcEEEcCCeeEEEECCCCEEEccCCcEEE-cceEEEe
Q 013914 85 KGIELILSTEIVRADIASKTLLSATGLIFK-YQILVIA 121 (434)
Q Consensus 85 ~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~-~d~lvlA 121 (434)
.++... ..+..++...+.+.+.+|..+. .|++|+|
T Consensus 72 ~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 72 ESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp SSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred ccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 011111 2456677788889999998776 6999986
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=8.3e-05 Score=61.74 Aligned_cols=127 Identities=22% Similarity=0.342 Sum_probs=95.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCccccc--CC--------
Q 013914 3 EKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCV--GS-------- 72 (434)
Q Consensus 3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 72 (434)
++++++||||||++|+.+|.+|++++. ..+|++|++++..+|.|+.+++.++..........+.... +.
T Consensus 2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1m6ia1 2 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 80 (213)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCC
Confidence 356899999999999999999999875 5789999999999999999988776554322110000000 00
Q ss_pred ---CCCCCChhhHhhcCcEEEcCCeeEEEECCCCEEEccCCcEEEcceEEEecCCCccccc
Q 013914 73 ---GGERLLPEWYKEKGIELILSTEIVRADIASKTLLSATGLIFKYQILVIATGSTVLRLT 130 (434)
Q Consensus 73 ---~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~ 130 (434)
.........+++.+++++.+++|+.|+.+.++|.+.+|+++.||+||+|||+.|..++
T Consensus 81 ~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~~~ 141 (213)
T d1m6ia1 81 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPNVE 141 (213)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEECCT
T ss_pred hhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecchhh
Confidence 0011122345667999999999999999999999999999999999999998876544
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.0016 Score=56.04 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=69.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCccCCcc------C--------C----------------------
Q 013914 162 KNGKAVVVGGGYIGLELSAALKI-NNIDVSMVYPEPWCMPRL------F--------T---------------------- 204 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~-~g~~v~lv~~~~~~~~~~------~--------~---------------------- 204 (434)
....|+|||+|+.|+.+|..|++ .|.+|+++++.+.+.... + .
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH 111 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence 45679999999999999999987 599999999886542110 0 0
Q ss_pred --HHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEe--------------CCCcEEECCEEEEcccCcc
Q 013914 205 --ADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKL--------------KDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 205 --~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~--------------~~g~~~~~D~vi~a~G~~p 263 (434)
..+...+.+.++..++.+..++.+..+.. .++++.++.. .++.++.++.++.++|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~ 185 (278)
T d1rp0a1 112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 185 (278)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEE-ETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred cHHHHHHHHHHHHHhCCCEEEeCCcceeeee-cCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence 02233444555667888888888877765 3444444432 1234788999999999654
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.13 E-value=0.0022 Score=53.47 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=66.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc-------------------------------------------
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR------------------------------------------- 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~------------------------------------------- 201 (434)
-++|||+|+.|+.+|..+++.|.+|.+++..+.....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 4899999999999999999999999999854321000
Q ss_pred -cCCH------------HHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEEeCCCc--EEECCEEEEcccCccChh
Q 013914 202 -LFTA------------DIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVGGRPLIS 266 (434)
Q Consensus 202 -~~~~------------~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~~~~g~--~~~~D~vi~a~G~~p~~~ 266 (434)
..+- .+.+.+...+++++|+++.+.. .+.. .....+...+++ .+.++.+++++|.+|...
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~--~~~~---~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~ 159 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYG--KFIG---PHKIMATNNKGKEKVYSAERFLIATGERPRYL 159 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEE--EEEE---TTEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEE--eecc---ccceecccccccccccccccceeecCCCceeE
Confidence 0010 1223345567888999987753 2322 222345555554 578999999999998754
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.04 E-value=0.0064 Score=54.05 Aligned_cols=32 Identities=19% Similarity=0.446 Sum_probs=27.1
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKI----NNIDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~----~g~~v~lv~~~~ 196 (434)
-|+|||+|+.|+-+|..+++ .|.+|.++++.+
T Consensus 23 DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~ 58 (356)
T d1jnra2 23 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58 (356)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence 68999999999888887764 699999998753
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.04 E-value=0.001 Score=49.78 Aligned_cols=87 Identities=24% Similarity=0.239 Sum_probs=60.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCCCccCccccCCCCCCCCCCcccccCCCCCCCChhhHh
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYK 83 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.++|+|||+|-+++-.|.+|++...+ |++|-|.+.+.-. .....+...
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a~~---V~li~r~~~~ra~----------------------------~~~~~~l~~ 81 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYGSK---VYIIHRRDAFRAS----------------------------KIMQQRALS 81 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTSSE---EEEECSSSSCCSC----------------------------HHHHHHHHT
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCCCc---EEEEEeccccccc----------------------------hhhhhcccc
Confidence 358999999999999999999987654 9999887542100 011123334
Q ss_pred hcCcEEEcCCeeEEEECCCC-----EEEc---cCC--cEEEcceEEEe
Q 013914 84 EKGIELILSTEIVRADIASK-----TLLS---ATG--LIFKYQILVIA 121 (434)
Q Consensus 84 ~~~v~~~~~~~v~~i~~~~~-----~v~~---~~~--~~~~~d~lvlA 121 (434)
..+++++.++.+..+.-+.+ .+.+ .++ .++..|.+++|
T Consensus 82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 45799999989988875542 2332 223 46889999887
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00052 Score=48.23 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.++|+|+|.|.+|+++|..|.++|.+ |+++|.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~---v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVT---PRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCE---EEEeeCCcC
Confidence 356899999999999999999999987 999998643
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=96.91 E-value=0.00076 Score=51.45 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=70.1
Q ss_pred cCHHHHHHHHHHHHhCC-CCcEEEEC------CCHHHHHHH----HHHHhCC--CeEEEEccCCccCC-ccCCHHHHHHH
Q 013914 146 REIDDADKLVEAIKAKK-NGKAVVVG------GGYIGLELS----AALKINN--IDVSMVYPEPWCMP-RLFTADIAAFY 211 (434)
Q Consensus 146 ~~~~~~~~~~~~l~~~~-~~~v~ViG------~g~~~~e~a----~~l~~~g--~~v~lv~~~~~~~~-~~~~~~~~~~~ 211 (434)
....+..+|++.|++.+ +.++++.- ++....|++ ..|.+.| .++.++...+.... ..+.+.+.+.+
T Consensus 15 ~~~~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~ 94 (141)
T d1fcda2 15 KAGEQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLY 94 (141)
T ss_dssp SCSHHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHH
Confidence 45567889999998865 45665532 233444444 4555655 46777765554322 01124455667
Q ss_pred HHHHHhcCcEEEcCCe--EEEEEecCCCcEEEEEeCCCcEEECCEEEEc
Q 013914 212 EGYYANKGIKIIKGTV--AVGFTTNADGEVKEVKLKDGRTLEADIVVVG 258 (434)
Q Consensus 212 ~~~l~~~GV~~~~~~~--v~~i~~~~~g~v~~v~~~~g~~~~~D~vi~a 258 (434)
.+.+++.||+++.+.. +.+++. .. ..+++.+|+++++|++.+.
T Consensus 95 ~~~~~~~~I~~~~~~~~~~v~vd~--~~--~~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 95 GFGTENAMIEWHPGPDSAVVKVDG--GE--MMVETAFGDEFKADVINLI 139 (141)
T ss_dssp CSTTSSCSEEEECSSTTCEEEEEE--TT--TEEEETTCCEEECSEEEEC
T ss_pred HHHHHhcCceeeecCCceEEeecC--Cc--EEEEeCCCcEEeeeEEEeC
Confidence 7777889999998764 555554 33 3578899999999998874
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.65 E-value=0.00088 Score=58.91 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~ 201 (434)
.|+++|||+|++|+-+|..|++.|.+|+++++.+++...
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~ 40 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN 40 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence 589999999999999999999999999999999887653
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.62 E-value=0.0012 Score=51.08 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=34.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
||.++++|.|||+|..|.++|..|...++. +++++|.++
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~--el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELA--DVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCC--EEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCc--eEEEEEecc
Confidence 788899999999999999999998888763 599999764
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0051 Score=44.28 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=36.3
Q ss_pred EEEEEeCCEEEEEEEecCCHHHHHHHHHHHHcCCCCCChhhhh
Q 013914 382 GTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLK 424 (434)
Q Consensus 382 ~~~~~~~~~ilG~~~~g~~~~~~~~~~~~i~~~~~~~~~~~l~ 424 (434)
+.||+++++|+|+.+++ --..+..+..+|..+...+|+..++
T Consensus 87 VIFYLrd~~VVGVLLWN-vFnrm~iAR~iI~~~~~~~DlnEvA 128 (131)
T d1m6ia3 87 VIFYLRDKVVVGIVLWN-IFNRMPIARKIIKDGEQHEDLNEVA 128 (131)
T ss_dssp EEEEEETTEEEEEEEES-CCSCHHHHHHHHHHCCBCSCSTTGG
T ss_pred EEEEecCCcEEEEEEec-ccCccHHHHHHHHcCCccchHHHHH
Confidence 44788999999999997 4468999999999999999988765
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0013 Score=58.60 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCcc----------------CCHHHHHHHHHHHHhcCcEEEc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRL----------------FTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~----------------~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
+..+|+|||+|.+|+-+|..|.+.|.+|+++++.+++..+. +...-...+.+++++.|+++..
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 82 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK 82 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence 45789999999999999999999999999999988764321 1001122456677888887654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.39 E-value=0.0012 Score=52.69 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++|+|||+|..|..+|.+|.+.|++ |+|++++..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~---V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIK---VTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCE---EEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCE---EEEEECChH
Confidence 47899999999999999999999886 999999853
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.33 E-value=0.0018 Score=50.89 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.-+|+|||+|.+|+.||..+.+.|.. |+++|.+.
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~---V~v~D~~~ 62 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAV---VMATDVRA 62 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCS
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCE---EEEEeccH
Confidence 45899999999999999999999876 99999874
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.32 E-value=0.0019 Score=50.03 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.-+|+|||+|.+|+.|+..+++.|.. |+++|.+.
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~---V~~~D~~~ 65 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQ---VQIFDINV 65 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCE---EEEEeCcH
Confidence 56899999999999999999999876 99999873
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.28 E-value=0.0016 Score=56.53 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
+|+|||+|+.|+.+|..|++.|.+|+++++.+++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 69999999999999999999999999999987663
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.27 E-value=0.0025 Score=48.69 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 2 AEKSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 2 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|.++++|.|||+|..|.++|..|+..+. ..++.++|.+.
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~ 40 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK 40 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence 4567899999999999999999999886 35699999863
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.20 E-value=0.0026 Score=53.74 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
..++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3578999999999999999999999999999975
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.05 E-value=0.0029 Score=50.48 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++.|||+|..|++.|..|+++|++ |.++++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~---V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQS---VLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 5899999999999999999999986 99999873
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.88 E-value=0.0044 Score=46.49 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|+|+|+|.-|...|..|.+.|.+ |+++|+++
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~---v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHD---IVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCC---cceecCCh
Confidence 799999999999999999999887 99999984
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0034 Score=54.55 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPR 201 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~ 201 (434)
.++|||+|++|+-+|..|++.|.+|+++++.+++...
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence 5899999999999999999999999999999888654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0046 Score=46.45 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++++|||.|..|...|..|.+.|.+ |+++|+++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~---vvvid~d~ 33 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHE---VLAVDINE 33 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCC---CEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCe---EEEecCcH
Confidence 4799999999999999999999987 99999984
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0035 Score=48.23 Aligned_cols=34 Identities=26% Similarity=0.539 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+++++|||||.+|.+-+..|.+.|.+|+++.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5899999999999999999999999999999653
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0029 Score=48.71 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.++++|||||..|+.-|..|.+.|.+ |+|+.++
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~---VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCK---LTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCE---EEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCE---EEEEeCC
Confidence 458999999999999999999999876 9999765
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.59 E-value=0.0051 Score=44.68 Aligned_cols=74 Identities=9% Similarity=0.189 Sum_probs=50.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
.+++++|||+|.+|..-+..|.+.|.+|+++.+. ..++. ....++.+++++...-
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~-------~~~~~----~~~~~~~~i~~~~~~~-------------- 65 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT-------FIPQF----TVWANEGMLTLVEGPF-------------- 65 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS-------CCHHH----HHHHTTTSCEEEESSC--------------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc-------CChHH----HHHHhcCCceeeccCC--------------
Confidence 5799999999999999999999999999998653 23433 3344555666543210
Q ss_pred EEeCCCcEEECCEEEEcccCcc
Q 013914 242 VKLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p 263 (434)
+......+++|+.|++-..
T Consensus 66 ---~~~dl~~~~lv~~at~d~~ 84 (113)
T d1pjqa1 66 ---DETLLDSCWLAIAATDDDT 84 (113)
T ss_dssp ---CGGGGTTCSEEEECCSCHH
T ss_pred ---CHHHhCCCcEEeecCCCHH
Confidence 1111223788888888544
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0067 Score=48.69 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.++|.|||+|.-|...|..+++.|++ |+++|+++
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~ 37 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHT---VVLVDQTE 37 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCc---EEEEECCh
Confidence 47999999999999999999999987 99999885
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=95.54 E-value=0.0046 Score=54.83 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHH-----hCCCeEEEEccCCccCC
Q 013914 165 KAVVVGGGYIGLELSAALK-----INNIDVSMVYPEPWCMP 200 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~-----~~g~~v~lv~~~~~~~~ 200 (434)
.|+|||+|+.|+-+|..|+ +.|.+|+++++.+.+..
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~ 49 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY 49 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc
Confidence 5899999999999999996 57999999999876643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0074 Score=47.06 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+|+|||+|.-|...|..|++.|++ |+++++++.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~---V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHE---VQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCc---eEEEEcCHH
Confidence 799999999999999999999987 999998753
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0065 Score=53.79 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=43.8
Q ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccC----------C------HHHHHHHHHHHHhcCcEEEcC
Q 013914 166 AVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLF----------T------ADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 166 v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~----------~------~~~~~~~~~~l~~~GV~~~~~ 225 (434)
|+|||+|+.|+-+|..|++.|.+|+++++.+++..+.. + ......+.+.+++.|++....
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 77 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKV 77 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEEC
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcceec
Confidence 79999999999999999999999999998776532110 0 001234566778888875433
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.36 E-value=0.011 Score=45.27 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAEKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|..++++|.||| .|.-|.+.|..|++.|++ |.++|++.
T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~---V~~~d~~~ 43 (152)
T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYP---ISILDRED 43 (152)
T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCC---EEEECTTC
T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCC---cEeccccc
Confidence 345568999999 699999999999999987 99999874
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.011 Score=41.09 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
++|+++|+|.|-+|+.+|..|.+.|.+|++.+..+..... +.+ +.++.++++.. +
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~~~~--------~----- 58 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHTGSL--------N----- 58 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEESBC--------C-----
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceeeccc--------c-----
Confidence 6789999999999999999999999999999875432211 111 12344433310 0
Q ss_pred EEeCCCcEEECCEEEEcccCccChhhhh
Q 013914 242 VKLKDGRTLEADIVVVGVGGRPLISLFK 269 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a~G~~p~~~~~~ 269 (434)
....-.+|.+|+++|..++.+++.
T Consensus 59 ----~~~~~~~d~vi~SPGi~~~~~~~~ 82 (93)
T d2jfga1 59 ----DEWLMAADLIVASPGIALAHPSLS 82 (93)
T ss_dssp ----HHHHHHCSEEEECTTSCTTSHHHH
T ss_pred ----hhhhccCCEEEECCCCCCCCHHHH
Confidence 001125799999999988877664
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0073 Score=48.48 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCM 199 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~ 199 (434)
-+++.|||+|..|..+|..++..|++|+++++.+..+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDIL 40 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 4799999999999999999999999999998765543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=95.33 E-value=0.008 Score=50.38 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999999999987654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.32 E-value=0.0094 Score=43.17 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.++|+|||+|..|..-|..|.+.|.+ |+++++..
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~---v~v~~~~~ 45 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGAR---LTVNALTF 45 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBE---EEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe---EEEEeccC
Confidence 468999999999999999999998876 99998763
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=95.31 E-value=0.0082 Score=50.54 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..|+|||+|+.|+.+|..+++.|.+|+++++.+.+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 47999999999999999999999999999988654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.28 E-value=0.0049 Score=49.40 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.+.+|+|||+|.-|.+.|..|++.|.+ |+++.+++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~g~~---V~l~~r~~ 40 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKKCRE---VCVWHMNE 40 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTEEE---EEEECSCH
T ss_pred eeceEEEECCCHHHHHHHHHHHHcCCe---EEEEEecH
Confidence 346899999999999999999998876 99998864
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.016 Score=44.13 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=33.0
Q ss_pred CCC-CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 1 MAE-KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 1 M~~-~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|++ ...+|.|||+|..|.++|..|...++ ..+++++|.++
T Consensus 1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~ 41 (148)
T d1ldna1 1 MKNNGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE 41 (148)
T ss_dssp CTTTTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence 443 35799999999999999999999876 45699999763
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.95 E-value=0.011 Score=50.14 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999864
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.81 E-value=0.0076 Score=48.10 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
+-+++.|||+|.+|..+|..++..|++|+++++.+.-
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~ 39 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHG 39 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 3579999999999999999999999999999876543
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.64 E-value=0.014 Score=45.96 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.|+++|+|+|.+|.-+|..|.+.|.+|++++|.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 589999999999999999999999999999875
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.58 E-value=0.019 Score=45.71 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.++|.|||+|.-|...|..+++.|++ |+++|+++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~---V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTP---ILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe---EEEEECCH
Confidence 357899999999999999999999987 99999974
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.41 E-value=0.019 Score=48.92 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-++|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 389999999999999999999999999998643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.41 E-value=0.016 Score=46.90 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||.|..|+..|..|++.|++ |+.+|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~---V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHE---VIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCc---EEEEeCCH
Confidence 699999999999999999999987 99999874
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.37 E-value=0.019 Score=49.48 Aligned_cols=32 Identities=22% Similarity=0.555 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINNI-DVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~~ 196 (434)
+|+|||+|.+|+-+|..|++.|. +|+++++.+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 79999999999999999999995 799999864
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.37 E-value=0.018 Score=45.50 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
+++.|||+|..|.-+|..|.+.|++|+++.+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 68999999999999999999999999999764
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=94.25 E-value=0.027 Score=43.81 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.++|+|||+|-++-+++..|.+.|.+. |.|+.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~--I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEK--LKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCC--EEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCE--EEEeccc
Confidence 4578999999999999999999998654 8999886
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=94.22 E-value=0.025 Score=43.55 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=33.3
Q ss_pred HHHHHhCCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013914 155 VEAIKAKKNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 195 (434)
Q Consensus 155 ~~~l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~ 195 (434)
.+.+.....++++|||+|.+|..++..|...|. ++++..|.
T Consensus 16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 334444578999999999999999999999997 58887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.15 E-value=0.083 Score=39.01 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYP 194 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~ 194 (434)
+|+|+|+|..|..++..|.+.|.+|++++.
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~ 31 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI 31 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecC
Confidence 689999999999999999999999999985
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=94.15 E-value=0.029 Score=42.44 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|.|||+|..|.++|..|..++. ..++.++|.+.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence 689999999999999999999875 35699998763
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.028 Score=43.49 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
+|+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999988754
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.02 E-value=0.047 Score=39.22 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=31.8
Q ss_pred CCCCcEEEECCC-----------HHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 3 EKSFKYVILGGG-----------VSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 3 ~~~~dvvIIG~G-----------~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..++|+|||+| .++..|+.+|++.|++ ++++..++.
T Consensus 2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~---~IliN~NPe 49 (121)
T d1a9xa4 2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYE---TIMVNCNPE 49 (121)
T ss_dssp SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCE---EEEECCCTT
T ss_pred CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCe---EEEEecChh
Confidence 356899999998 5889999999999987 899988864
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=93.94 E-value=0.049 Score=41.78 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|.|||+|..|-++|+.|...++ ..++.++|.+.
T Consensus 19 ~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~ 55 (160)
T d1i0za1 19 PNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE 55 (160)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 35799999999999999999999886 45799999863
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.94 E-value=0.02 Score=46.90 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-++|||+|+.|+.+|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 58999999999999999999999999998754
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.84 E-value=0.04 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|.|||+|..|.++|+.|...++ ..++.|+|.+.
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~ 54 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT 54 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence 34689999999999999999999876 45699999763
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=93.67 E-value=0.032 Score=48.17 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 689999999999999999999999999998654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.052 Score=38.79 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVA 43 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~~ 43 (434)
..+|.|||||-=|...|..+.+.|++ +.++|+++..
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~---v~v~d~~~~~ 46 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVE---VIAVDRYADA 46 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCE---EEEEESSTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCE---EEEEcCCCCC
Confidence 47899999999999999999999997 9999998653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.039 Score=43.00 Aligned_cols=35 Identities=9% Similarity=0.225 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.++|+|+|+|-++-+++..|.+.|.+ |+|+.|+.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~---i~I~nRt~ 51 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCA---VTITNRTV 51 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceE---EEeccchH
Confidence 357899999999999999999998865 99998873
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.49 E-value=0.053 Score=40.76 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.+|.|||+|..|.++|..|...++ ..++.++|.+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccC
Confidence 579999999999999999999876 45699999774
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=93.49 E-value=0.035 Score=49.26 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.|+|||+|+.|+-+|..|++.|.+|.+++++.+
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 589999999999999999999999999999754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.053 Score=39.44 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCcEEEECCCH-----------HHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGV-----------SAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~-----------aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.++|+|||+|| ++..|+.+|++.|++ ++++..++.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~---~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYR---VINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCE---EEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCe---EEEecCchH
Confidence 458999999985 789999999999998 899998864
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=93.17 E-value=0.062 Score=40.37 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||+|..|.+.|..|...+. ..+++++|.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence 69999999999999999999875 34699999774
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.17 E-value=0.042 Score=49.08 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHh------CCCeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKI------NNIDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~------~g~~v~lv~~~~~~~ 199 (434)
-|+|||+|+.|+-+|..|++ .|.+|.++++...+.
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG 74 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence 79999999999999999987 799999999986653
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=93.16 E-value=0.064 Score=40.29 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.+|.|||+|..|.++|..|...++ ..+++++|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 579999999999999999999886 45799999763
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=93.13 E-value=0.043 Score=48.72 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.++|||+|+.|+-+|..|++.|.+|++++++..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 41 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS 41 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 579999999999999999999999999998743
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.16 Score=38.52 Aligned_cols=81 Identities=12% Similarity=0.139 Sum_probs=52.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEE
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEV 242 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v 242 (434)
..+++|+|.|..|..++..|.+.|.+|++++. +++......+.+...|+.++.+... +.. .+
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~---------d~~~~~~~~~~~~~~~~~vi~Gd~~-------d~~--~L 64 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISN---------LPEDDIKQLEQRLGDNADVIPGDSN-------DSS--VL 64 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEEC---------CCHHHHHHHHHHHCTTCEEEESCTT-------SHH--HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEec---------cchhHHHHHHHhhcCCcEEEEccCc-------chH--HH
Confidence 45899999999999999999999999999974 3333333334455678887765321 000 00
Q ss_pred EeCCCcEEECCEEEEcccCcc
Q 013914 243 KLKDGRTLEADIVVVGVGGRP 263 (434)
Q Consensus 243 ~~~~g~~~~~D~vi~a~G~~p 263 (434)
. .-| .-++|.+|++++...
T Consensus 65 ~-~a~-i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 65 K-KAG-IDRCRAILALSDNDA 83 (153)
T ss_dssp H-HHT-TTTCSEEEECSSCHH
T ss_pred H-Hhc-cccCCEEEEccccHH
Confidence 0 001 124889999887543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.08 E-value=0.048 Score=42.17 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||.|.-|.+.|..|++.|++ |+++|+++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~---V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHY---LIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCCE---EEEEECCc
Confidence 699999999999999999999986 99998873
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=93.01 E-value=0.055 Score=40.69 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|.|||+|..|.++|..|...++. ++.++|.+.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~--dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELG--DIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCS--EEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcc--eEEEEeecc
Confidence 5899999999999999999988763 599998764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.01 E-value=0.038 Score=41.04 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=50.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
|+++|+|.|..|..+|..|.+.|.+|++++. +++..+. +++.|..++.+.. .+..+ +.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~---------d~~~~~~----~~~~~~~~~~gd~-------~~~~~--l~ 58 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI---------NEEKVNA----YASYATHAVIANA-------TEENE--LL 58 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEES---------CHHHHHH----TTTTCSEEEECCT-------TCTTH--HH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecC---------cHHHHHH----HHHhCCcceeeec-------ccchh--hh
Confidence 5799999999999999999999999999974 4444433 3455665543311 01100 00
Q ss_pred eCCCcEEECCEEEEcccCccCh
Q 013914 244 LKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
.-| .-.+|.++++++.....
T Consensus 59 -~a~-i~~a~~vi~~~~~~~~~ 78 (134)
T d2hmva1 59 -SLG-IRNFEYVIVAIGANIQA 78 (134)
T ss_dssp -HHT-GGGCSEEEECCCSCHHH
T ss_pred -ccC-CccccEEEEEcCchHHh
Confidence 001 23589999999865433
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=92.98 E-value=0.044 Score=47.64 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 699999999999999999999999999998654
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=92.90 E-value=0.05 Score=48.14 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
-++|||+|+.|+-+|..|++.|.+|.++++++..
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~ 39 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 39 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence 5899999999999999999999999999987543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.65 E-value=0.072 Score=39.96 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||+|..|.+.|..|...+. -.++.++|.++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 35 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence 79999999999999999998875 45799999763
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.055 Score=35.65 Aligned_cols=34 Identities=26% Similarity=0.175 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
|+|.|+|+|..|-.++....+.|.++.++++.+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5789999999999999999999999999987643
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.078 Score=41.73 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
.++|+|||+|-+|-+++..|.+.|.+. ++++.|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~~--i~i~nR~~ 52 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIEGLKE--IKLFNRRD 52 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSE--EEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHhhcCCce--Eeeeccch
Confidence 478999999999999999999988654 89998874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.49 E-value=0.056 Score=42.54 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+|.|||+|.-|.+.|..|++.|.+ |.++.+.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~---V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNE---VRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCE---EEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCE---EEEEEec
Confidence 799999999999999999999876 9998764
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=92.37 E-value=0.059 Score=47.00 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 59999999999999999999999999998754
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.15 E-value=0.092 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||+|..|.++|..|...+. ..++.++|.++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~~ 35 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVDK 35 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeccc
Confidence 79999999999999999998876 45799999763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.08 Score=42.48 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++|+|+|| |..|...+..|.++|++ |+++.|++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~---V~~~~R~~ 37 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYE---VTVLVRDS 37 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCE---EEEEESCG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEEcCh
Confidence 568999995 99999999999999986 99998874
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=92.07 E-value=0.058 Score=46.76 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~ 53 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPF 53 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=92.04 E-value=0.24 Score=37.83 Aligned_cols=96 Identities=22% Similarity=0.383 Sum_probs=58.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKE 241 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~ 241 (434)
++.+++|+|+|..|...+..+.+.|.+|++++.+ .+..+.++..+... ++.....+ ..
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~---------~~~l~~l~~~~~~~-~~~~~~~~---------~~--- 88 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN---------VERLSYLETLFGSR-VELLYSNS---------AE--- 88 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHGGG-SEEEECCH---------HH---
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc---------HHHHHHHHHhhccc-ceeehhhh---------hh---
Confidence 5789999999999999999999999999999853 44444454444322 33221111 00
Q ss_pred EEeCCCcEEECCEEEEc---ccCccChhhhhccccc-cCCcEEeC
Q 013914 242 VKLKDGRTLEADIVVVG---VGGRPLISLFKGQVAE-NKGGIETD 282 (434)
Q Consensus 242 v~~~~g~~~~~D~vi~a---~G~~p~~~~~~~~~~~-~~g~i~vd 282 (434)
+. ...-++|.||-+ .|.+++.-+-+.-+.. ..|.+.||
T Consensus 89 --l~-~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 89 --IE-TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp --HH-HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred --HH-HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence 00 011248888875 4444433222333333 77889888
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.97 E-value=0.058 Score=35.54 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+.|-|||||-=|...+....+.|++ +.++++++.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~---v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIA---VWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEE---EEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCE---EEEEcCCCC
Confidence 5799999999999999999999998 999998765
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.14 Score=36.44 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 163 NGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 163 ~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
..++.|+|+|..|..++....+.|.++.++++.+.
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 45799999999999999999999999999987644
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.71 E-value=0.12 Score=40.06 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|.|||.|.-|.+.|+.|++.|+ ..+|..+|++.
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence 369999999999999999999886 34577888763
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.61 E-value=0.091 Score=39.49 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.5
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+|+|||| |..|.++|..|...++ ..++.++|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence 6999996 9999999999998876 4569999875
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.60 E-value=0.12 Score=39.18 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+|.|||+|..|-++|..|.+.+.. +++|+|.+.
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~--el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLG--DVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCC--eEEEEeccC
Confidence 46899999999999999988887763 699999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.12 Score=40.08 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|.+ +|+++|+++
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~--~Vi~~d~~~ 61 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAA--QVVVTDLSA 61 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESCH
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCc--eEEeccCCH
Confidence 35799999999999999999988864 388888873
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.51 E-value=0.11 Score=39.13 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=28.4
Q ss_pred cEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 7 KYVILGG-GVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+|.|||+ |..|.++|..|...++ -.++.++|.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~ 35 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGRE 35 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECG
T ss_pred EEEEECCCChHHHHHHHHHHhCCc-ccccccccch
Confidence 6999996 9999999999998875 3469999876
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.39 E-value=0.1 Score=40.42 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|.+ |++++.++
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~---vi~~~~~~ 61 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAE---TYVISRSS 61 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCE---EEEEESSS
T ss_pred CCEEEEECCCCcchhHHHHhhhcccc---ccccccch
Confidence 35799999999999999888888876 88898874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.35 E-value=0.1 Score=40.37 Aligned_cols=34 Identities=9% Similarity=0.121 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|.+ |+++|+++
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~---vi~v~~~~ 60 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAF---VVCTARSP 60 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEEcccccchhhHhhHhhhccc---ccccchHH
Confidence 35799999999999999888888865 99999874
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.16 Score=38.47 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
-.+||+|.|.-|...+..|.+.|.+ |++||.++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~---v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQN---VTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCC---EEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC---EEEEeccc
Confidence 3599999999999999999999887 99999874
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=91.33 E-value=0.11 Score=39.71 Aligned_cols=35 Identities=14% Similarity=0.385 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+..+++|||+|..|-..+.+|...|.+. ++++.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~--i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRA--VLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSE--EEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcE--EEEEcCc
Confidence 4578999999999999999999998653 8888876
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.26 E-value=0.15 Score=39.55 Aligned_cols=125 Identities=19% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCC--eEEEEEecCCCcE
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGT--VAVGFTTNADGEV 239 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~--~v~~i~~~~~g~v 239 (434)
+|.+|+|+|+|..|+..+....++|..|++++.+...+ +.+++.+-++..-. .....+. ..+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~-------------~~l~~l~~~~i~~~~~~~~~~~~-~~gyA 93 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATK-------------EQVESLGGKFITVDDEAMKTAET-AGGYA 93 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTH-------------HHHHHTTCEECCC----------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHH-------------HHHHHhhcceEEEeccccccccc-cccch
Confidence 57899999999999999999999999999998653221 34555655554210 0111111 01100
Q ss_pred EEE--EeCCC-------cEEECCEEEEc---ccCccChhhhhccccc-cCCcEEeCC------CCCCCCCc-EEEecccc
Q 013914 240 KEV--KLKDG-------RTLEADIVVVG---VGGRPLISLFKGQVAE-NKGGIETDD------FFKTSADD-VYAVGDVA 299 (434)
Q Consensus 240 ~~v--~~~~g-------~~~~~D~vi~a---~G~~p~~~~~~~~~~~-~~g~i~vd~------~~~t~~~~-iya~GD~~ 299 (434)
..+ .+... ..-++|.||-+ .|.+++.-.-+.-+.. ..|.+.||= .++|++|+ +|..-++.
T Consensus 94 ~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~Ets~~~~~~~~~gV~ 173 (183)
T d1l7da1 94 KEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVK 173 (183)
T ss_dssp --------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEE
T ss_pred hhcCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccccCcCCCEEEECCEE
Confidence 000 00000 01248988865 3444332222223333 678899982 46676665 66655554
Q ss_pred c
Q 013914 300 T 300 (434)
Q Consensus 300 ~ 300 (434)
.
T Consensus 174 ~ 174 (183)
T d1l7da1 174 I 174 (183)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.73 E-value=0.11 Score=41.10 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=28.9
Q ss_pred cEEEE-CCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVIL-GGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvII-G~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|| |+|.-|.+.|..|++.|++ |++..|++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~---V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHE---IVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCE---EEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCE---EEEEECCH
Confidence 69999 6799999999999999987 99999874
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.66 E-value=0.22 Score=33.65 Aligned_cols=74 Identities=26% Similarity=0.198 Sum_probs=50.4
Q ss_pred cEEEECCCHHHH-HHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEEEEE
Q 013914 165 KAVVVGGGYIGL-ELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVK 243 (434)
Q Consensus 165 ~v~ViG~g~~~~-e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~~v~ 243 (434)
++-++|-|=+|+ -+|..|.+.|.+|+--++.+ .+ ..+.|++.|++++.+.....+
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~-------~~-----~t~~L~~~Gi~i~~gh~~~~i------------ 58 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE-------TE-----RTAYLRKLGIPIFVPHSADNW------------ 58 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC-------CH-----HHHHHHHTTCCEESSCCTTSC------------
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC-------Ch-----hHHHHHHCCCeEEeeeccccc------------
Confidence 567788666665 46899999999999876532 22 224589999999876532111
Q ss_pred eCCCcEEECCEEEEcccCccChhhh
Q 013914 244 LKDGRTLEADIVVVGVGGRPLISLF 268 (434)
Q Consensus 244 ~~~g~~~~~D~vi~a~G~~p~~~~~ 268 (434)
..+|+||+..+...+...+
T Consensus 59 ------~~~d~vV~SsAI~~~npel 77 (89)
T d1j6ua1 59 ------YDPDLVIKTPAVRDDNPEI 77 (89)
T ss_dssp ------CCCSEEEECTTCCTTCHHH
T ss_pred ------CCCCEEEEecCcCCCCHHH
Confidence 2378999988876654433
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.57 E-value=0.17 Score=38.86 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..+|+|+|+|+.|+.++..++..|.+ |+++++++
T Consensus 28 g~~VlV~GaG~vG~~~~~~ak~~G~~---Vi~~~~~~ 61 (166)
T d1llua2 28 GQWVAISGIGGLGHVAVQYARAMGLH---VAAIDIDD 61 (166)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESCH
T ss_pred CCEEEEeeccccHHHHHHHHHHcCCc---cceecchh
Confidence 35799999999999999888888865 99998874
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.55 E-value=0.093 Score=41.78 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|.|||.|..|+..|..++ .|++ |+.+|-++
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~---V~g~Din~ 32 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNE---VTIVDILP 32 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSE---EEEECSCH
T ss_pred EEEEECCChhHHHHHHHHH-CCCc---EEEEECCH
Confidence 6999999999999998776 4776 99999874
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.54 E-value=0.17 Score=46.00 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEcCCeEEEEEec-CCCcEEEEEeCCCcEEECCEEEEcccCccC
Q 013914 204 TADIAAFYEGYYANKGIKIIKGTVAVGFTTN-ADGEVKEVKLKDGRTLEADIVVVGVGGRPL 264 (434)
Q Consensus 204 ~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~-~~g~v~~v~~~~g~~~~~D~vi~a~G~~p~ 264 (434)
-.++.+.+-+...-.|-.+++++.|+++..+ +++++..+.+.+|+++.|+.+|.....-|.
T Consensus 375 ~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~ 436 (491)
T d1vg0a1 375 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 436 (491)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred cchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCc
Confidence 3588888989999999999999999999764 567788889999999999999988776554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=90.44 E-value=0.15 Score=39.61 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|.+. |++++.++
T Consensus 28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~--Vi~~d~~~ 62 (174)
T d1jqba2 28 GSSVVVIGIGAVGLMGIAGAKLRGAGR--IIGVGSRP 62 (174)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTTTCSC--EEEECCCH
T ss_pred CCEEEEEcCCcchhhhhhhhhcccccc--cccccchh
Confidence 457999999999999999888888643 88898864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=0.12 Score=40.63 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|+|+|+|+.|+.++..++..|.+ .|+++++++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~ 63 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP 63 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred CEEEEECCCccchhheecccccccc--ccccccccc
Confidence 5799999999999999999888863 289998874
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.12 E-value=0.023 Score=46.96 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeE
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDV 189 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v 189 (434)
+|+|||+|.+|+-.|..|++.|.+|
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred EEEEECchHHHHHHHHHHHHCCCCc
Confidence 6999999999999999999998653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.96 E-value=0.15 Score=39.60 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=28.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|+|+|+|+-|+.++..++..|.+. |++.|.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~--Vi~~d~~~ 63 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASR--IIAIDING 63 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE--EEEECSCG
T ss_pred CEEEEECCChHHHHHHHHHHHhCCce--eeeeccch
Confidence 57999999999999999999988652 66777663
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=89.93 E-value=0.16 Score=34.96 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=31.7
Q ss_pred CCCCCCcEEEECCCHHHHHH-HHHHHHcCCCCCcEEEEeCC
Q 013914 1 MAEKSFKYVILGGGVSAGYA-AREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 1 M~~~~~dvvIIG~G~aGl~a-A~~l~~~g~~~~~V~vie~~ 40 (434)
||.+.+++-+||-|-+|+++ |..|.++|+. |+--|..
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~---VsGSD~~ 41 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQ---ISGSDIA 41 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCE---EEEEESC
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCE---EEEEeCC
Confidence 45667899999999999998 8999999987 8888765
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=89.90 E-value=0.16 Score=44.78 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-++|||+|..|+-+|..|++.|.+|.++++++.
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~ 36 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP 36 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence 479999999999999999999999999999853
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.21 Score=37.68 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 163 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 163 ~~~v~ViG-~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
-+++.||| .|..|.-+|..|.+.|++|+++++..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 57999999 69999999999999999999998754
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.74 E-value=0.13 Score=39.84 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=28.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.+.|+|+|+|-++-+++..|.+.+. +|+|+.|+
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~---~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQ---NIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCc---eeeeccch
Confidence 35689999999999999999987543 39999887
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.23 E-value=0.14 Score=42.02 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=26.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKINN---IDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g---~~v~lv~~~ 195 (434)
+++|||+|+.|+.+|..+++++ .+|+++++.
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~ 36 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD 36 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence 7899999999999998877765 679999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.05 E-value=0.19 Score=39.04 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|+|+|+|+.|+.++..++..|.. +|+++|.++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~--~Vi~vd~~~ 64 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGAS--RIIGIDLNK 64 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEECCCchhHHHHHHHHHcCCc--eEEEecCcH
Confidence 4599999999999999999998853 389999874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.02 E-value=0.21 Score=39.54 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
..+|+|+|+|+.|+.++..++..|.. +|++++.+
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~--~Vi~~d~~ 59 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAA--VVIVGDLN 59 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhccc--ceeeeccc
Confidence 45799999999999999888877753 38888876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=88.85 E-value=0.2 Score=38.53 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
...|+|+|+|+.|+.++..++..|.+ +++++.+
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~---~i~~~~~ 63 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAH---VVAFTTS 63 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEEESS
T ss_pred CCEEEEeccchHHHHHHHHhhccccc---chhhccc
Confidence 35799999999999999888888876 7778775
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.83 E-value=0.19 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++|-+||-|.-|...|..|.++|++ |.++|++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~---v~~~d~~~ 34 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYL---LNVFDLVQ 34 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCE---EEEECSSH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCe---EEEEECch
Confidence 3699999999999999999999987 99998873
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=88.79 E-value=0.18 Score=34.78 Aligned_cols=74 Identities=19% Similarity=0.088 Sum_probs=51.0
Q ss_pred CCCcEEEECCCHHHHHH-HHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcCCeEEEEEecCCCcEE
Q 013914 162 KNGKAVVVGGGYIGLEL-SAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVK 240 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~-a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~g~v~ 240 (434)
..+++-++|-|-+|+-. |..|.+.|.+|+--+... .+.. +.+++.|++++.+.....+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~-------~~~~-----~~L~~~Gi~v~~g~~~~~i--------- 65 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD-------GVVT-----QRLAQAGAKIYIGHAEEHI--------- 65 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC-------SHHH-----HHHHHTTCEEEESCCGGGG---------
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC-------Chhh-----hHHHHCCCeEEECCccccC---------
Confidence 46789999877777654 999999999999876542 2222 4566789998876542211
Q ss_pred EEEeCCCcEEECCEEEEcccCccCh
Q 013914 241 EVKLKDGRTLEADIVVVGVGGRPLI 265 (434)
Q Consensus 241 ~v~~~~g~~~~~D~vi~a~G~~p~~ 265 (434)
-.+|+||...+...+.
T Consensus 66 ---------~~~d~vV~S~AI~~~n 81 (96)
T d1p3da1 66 ---------EGASVVVVSSAIKDDN 81 (96)
T ss_dssp ---------TTCSEEEECTTSCTTC
T ss_pred ---------CCCCEEEECCCcCCCC
Confidence 1268899988876543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=88.62 E-value=0.14 Score=40.44 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYP 194 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~ 194 (434)
++++|+|+|..|.-+|..|.+.|.+|++..|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r 38 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHM 38 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEe
Confidence 4799999999999999999999999999864
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.62 E-value=0.25 Score=37.60 Aligned_cols=34 Identities=26% Similarity=0.212 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+|+++|+|-|.+|-.+|..++.+|.+|++.+..
T Consensus 23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 6899999999999999999999999999998753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=88.56 E-value=0.2 Score=41.45 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
..+|+|||+|--|-.+|..|++.|.+. ++++|.+..
T Consensus 30 ~~~VliiG~GglGs~va~~La~~Gvg~--i~lvD~D~V 65 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASAGVGN--LTLLDFDTV 65 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHHTCSE--EEEECCCBC
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCe--EEEECCccc
Confidence 368999999999999999999999654 999998754
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=88.23 E-value=1.4 Score=33.60 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++++++|+|+|-.+--++..|.+.+.+++++.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~ 50 (171)
T d1p77a1 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRT 50 (171)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence 5789999999999999999999988999999764
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.14 E-value=0.18 Score=39.22 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+.++|+|||+|-++-+++..|.+.+ +|.|+.|+
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~~~----~i~I~nR~ 49 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAKDN----NIIIANRT 49 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTSSS----EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHcccc----ceeeehhh
Confidence 3578999999999998888886644 39999886
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.01 E-value=0.61 Score=39.29 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=42.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEcC
Q 013914 163 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKG 225 (434)
Q Consensus 163 ~~~v~ViG~-g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 225 (434)
.++|+|.|+ |.+|..++..|.+.|.+|+.+.|.+... +.... .....+...+++++..
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~~ 61 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIEA 61 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEEe
Confidence 467999996 9999999999999999999998864432 22222 2334567778887643
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=87.99 E-value=0.35 Score=37.48 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+|-|||-|.-|...|..|.+.|++ |.++++++
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~---V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFV---VCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCC---EEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCe---EEEEcCCH
Confidence 35799999999999999999999987 99999874
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=87.94 E-value=0.078 Score=38.85 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQ-GVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~~V~vie~~~~ 42 (434)
++++|+|+|+|-+|.+.+.++.+. +++. |..||.++.
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~i--v~fiDdd~~ 39 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFEL--RGFFDVDPE 39 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEE--EEEEESCTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEE--EEEEeCchH
Confidence 467999999999999888766542 3332 567887643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.91 E-value=0.25 Score=38.23 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
..+|+|+|+|+.|+.++..++..|.+. |++.+.+
T Consensus 29 g~~VlI~G~G~iG~~~~~~ak~~g~~~--v~~~~~~ 62 (174)
T d1f8fa2 29 ASSFVTWGAGAVGLSALLAAKVCGASI--IIAVDIV 62 (174)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHHTCSE--EEEEESC
T ss_pred CCEEEEeCCCHHHhhhhhcccccccce--eeeeccH
Confidence 357999999999999999988888762 5566655
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.91 E-value=0.24 Score=38.43 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=28.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
..|+|+|+|+.|+.++..++..|.+. |+++|.+
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~--Vi~~d~~ 61 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASR--IIGVGTH 61 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSE--EEEECSC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCce--eeccCCh
Confidence 46999999999999999999988643 7788776
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=87.88 E-value=0.33 Score=36.13 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=28.0
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 7 KYVILG-GGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+|.||| +|..|-++|..|..+++ ..++.++|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di~ 35 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDIP 35 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECCG
T ss_pred eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEecC
Confidence 799999 69999999999999876 4568888853
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=87.79 E-value=0.3 Score=36.94 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.-+.++|+|=|..|-.+|.+|+..|.+ |+|.|.++.
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~---V~V~E~DPi 57 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGAR---VYITEIDPI 57 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCE---EEEECSCHH
T ss_pred cCCEEEEecccccchhHHHHHHhCCCE---EEEEecCch
Confidence 457999999999999999999999886 999998853
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=87.75 E-value=0.78 Score=38.31 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=42.9
Q ss_pred CCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEEc
Q 013914 163 NGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIK 224 (434)
Q Consensus 163 ~~~v~ViG~-g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~~ 224 (434)
.++|+|.|+ |.+|-.++..|.+.|.+|+.+.|.+.... ....... ...+...+++++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 61 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH 61 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence 478999996 89999999999999999999998765543 2333333 3445667777653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.70 E-value=0.31 Score=37.21 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++.|||.|..|.-+|..|.+.|.+|+.+++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999988753
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=87.68 E-value=0.29 Score=41.53 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
++.+|+|+|| |..|...+..|.++|++ |+++.|+.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~---V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCE---EEEEECCC
Confidence 4678999996 99999999999999987 99998864
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.46 E-value=0.62 Score=36.29 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=27.9
Q ss_pred cEEEE-CCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 165 KAVVV-GGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 165 ~v~Vi-G~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++.|+ |+|.+|..+|..|++.|++|++..|.
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 57898 67999999999999999999999764
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=87.42 E-value=0.42 Score=34.07 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=31.0
Q ss_pred CCCcEEEECCCH-----------HHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~-----------~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..++++|+|+|+ .+..++..|++.|.++.++...|.-
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 357999999985 5678889999999999999887653
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=87.37 E-value=0.26 Score=37.59 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|-|||-|.-|...|..|.+.|++ |.++++++
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~---V~~~d~~~ 33 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYS---LVVSDRNP 33 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCe---EEEEeCCc
Confidence 599999999999999999999987 99998873
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=0.36 Score=36.65 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
-+.++|||-|..|-.+|..|+..|.+ |++.|.++
T Consensus 24 Gk~v~V~GyG~iG~g~A~~~rg~G~~---V~v~e~dp 57 (163)
T d1li4a1 24 GKVAVVAGYGDVGKGCAQALRGFGAR---VIITEIDP 57 (163)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEeccccccHHHHHHHHhCCCe---eEeeeccc
Confidence 47899999999999999999999887 99999874
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=87.09 E-value=0.36 Score=38.75 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
+..++|+.|+|.||+..|..+.+.+.+. +.++|+...
T Consensus 25 ~d~riv~~GAGsAg~gia~~l~~~~~~~--i~~~D~~GL 61 (222)
T d1vl6a1 25 EEVKVVVNGIGAAGYNIVKFLLDLGVKN--VVAVDRKGI 61 (222)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCCE--EEEEETTEE
T ss_pred hhcEEEEEChHHHHHHHHHHHHHhcccc--eEeecceeE
Confidence 3578999999999999999999988764 889998743
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.94 E-value=0.55 Score=36.02 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++++++|+|+|-.+--++..|.+.|.+++++.|.
T Consensus 17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 5789999999999999999999999999988764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=86.77 E-value=0.32 Score=37.52 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=27.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|+|+|+|+.|+.++..++..+.. .|+.++.++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~--~Vi~~~~~~ 63 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAK--RIIAVDLNP 63 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEEecCCccchHHHHHHHHhhc--hheeecchH
Confidence 4588999999999999999988754 377787763
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.71 E-value=0.48 Score=35.31 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=25.8
Q ss_pred cEEEEC-CCHHHHHHHHHHHHc-CCCCCcEEEEeCC
Q 013914 7 KYVILG-GGVSAGYAAREFAKQ-GVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG-~G~aGl~aA~~l~~~-g~~~~~V~vie~~ 40 (434)
+|.||| +|..|-+.|..|..+ +. ..++.++|..
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~ 36 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence 799999 599999999888654 43 3459999864
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=86.64 E-value=0.31 Score=43.36 Aligned_cols=35 Identities=29% Similarity=0.437 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~ 199 (434)
-++|||+|..|+-+|..|++.+ .+|.++++++...
T Consensus 26 D~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~ 61 (391)
T d1gpea1 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYES 61 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCT
T ss_pred eEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCC
Confidence 5799999999999999999998 6999999997543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=86.56 E-value=0.71 Score=36.14 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 161 KKNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 161 ~~~~~v~ViG-~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
..+|+++|.| +|-+|.++|..|.+.|.+|+++.|.
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~ 56 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK 56 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence 3689999999 5899999999999999999998875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=86.28 E-value=0.34 Score=36.46 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKE 40 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~ 40 (434)
+|-|||.|..|.+.|..|++.|++ |++.++.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~---v~~~~~~ 32 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVE---VVTSLEG 32 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCE---EEECCTT
T ss_pred EEEEEcHHHHHHHHHHHHHHCCCe---EEEEcCc
Confidence 699999999999999999999876 7777765
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.17 E-value=0.37 Score=38.75 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.2
Q ss_pred CCcEEEECCCHHHHHHHHHHH
Q 013914 5 SFKYVILGGGVSAGYAAREFA 25 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~ 25 (434)
.++|+|||+|-.++=+|+.|.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHH
T ss_pred CceEEEECCCchhHhhhhhhc
Confidence 478999999999999999887
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=86.15 E-value=0.31 Score=37.93 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYP 194 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~ 194 (434)
+|.|+|+|..|.-+|..|.+.|.+|++..|
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r 31 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT 31 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence 589999999999999999999999999865
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=86.02 E-value=0.49 Score=36.59 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 7 KYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 7 dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+|-|||-|.-|...|..|.+.|++ |.+++++.
T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~~---V~~~dr~~ 34 (178)
T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGFK---VAVFNRTY 34 (178)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCC---EEEECSSH
T ss_pred EEEEEeehHHHHHHHHHHHHCCCe---EEEEECCH
Confidence 699999999999999999999987 99998863
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=86.01 E-value=0.39 Score=40.32 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.+++|+|+|| |..|-..+..|.+.|++ |.+++++..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~---V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHP---TFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCC---EEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCe---EEEEECCCc
Confidence 3678999997 99999999999999986 999998743
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.72 E-value=0.34 Score=37.05 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=28.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|.+ |++++.++
T Consensus 28 g~~vlv~G~G~iG~~a~~~a~~~g~~---v~~~~~~~ 61 (168)
T d1rjwa2 28 GEWVAIYGIGGLGHVAVQYAKAMGLN---VVAVDIGD 61 (168)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHTTCE---EEEECSCH
T ss_pred CCEEEEeecccchhhhhHHHhcCCCe---EeccCCCH
Confidence 35799999999999998888887765 88887763
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.59 E-value=0.45 Score=36.46 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
++.+++|+|+|.+|.-.+..++..|.+|..+++++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 67899999999999999999889999999887654
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.31 E-value=0.41 Score=38.75 Aligned_cols=36 Identities=31% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHc--------------------CCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQ--------------------GVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~--------------------g~~~~~V~vie~~~~ 42 (434)
.++|+|||+|-.++=+|+.|.+. |.+ +|.++.+...
T Consensus 39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~--~V~iv~RRg~ 94 (225)
T d1cjca1 39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK--TVWIVGRRGP 94 (225)
T ss_dssp SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC--EEEEECSSCG
T ss_pred CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC--eEEEEEEcCh
Confidence 47899999999999999999983 443 4999998753
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=0.35 Score=41.14 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=28.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
--|+|||+|..|+-+|..+++.| +|.++++.+.
T Consensus 8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~ 40 (305)
T d1chua2 8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPV 40 (305)
T ss_dssp CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence 36899999999999999998888 8999988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=85.06 E-value=0.46 Score=36.51 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=28.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
...|+|+|+|+.|+.++..++..|... |+++++++
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~~g~~~--vv~~~~~~ 67 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKVMTPAT--VIALDVKE 67 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHCCCE--EEEEESSH
T ss_pred CCEEEEeCCChHHHHHHHHHHhhcCcc--cccccchh
Confidence 357999999999999999888888643 67777763
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.03 E-value=0.39 Score=38.13 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++.|||.|+.|+-+|..|++.|.+|+.++..
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 5889999999999999999999999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=85.03 E-value=0.46 Score=36.37 Aligned_cols=34 Identities=26% Similarity=0.204 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++.+++|+|+|.+|+-++..++..|.+|..+++.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence 5789999999999999999999999999988754
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.89 E-value=0.61 Score=36.22 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
.++++.|+|.|.+|.++|..+..+|.+|..+.+.+
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 47899999999999999999999999999987653
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=84.78 E-value=0.54 Score=36.86 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+.+.++|.| +|-.|...|..|+++|.+ |++++++.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~---V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAE---VVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccc---hhhcccch
Confidence 457899998 588999999999999986 99999884
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=84.76 E-value=0.5 Score=34.05 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCcEEEECCCH-----------HHHHHHHHHHhCCCeEEEEccCCcc
Q 013914 162 KNGKAVVVGGGY-----------IGLELSAALKINNIDVSMVYPEPWC 198 (434)
Q Consensus 162 ~~~~v~ViG~g~-----------~~~e~a~~l~~~g~~v~lv~~~~~~ 198 (434)
..++++|+|+|+ .++.++..|++.|.++.++...+.-
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T 53 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT 53 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence 468999999986 5778889999999999999877553
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.71 E-value=1.4 Score=36.29 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEE
Q 013914 162 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 162 ~~~~v~ViG~-g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
++|.++|.|+ +-+|.++|..|++.|.+|.+..+. .++..+.+.+.+++.|.+++
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~--------~~~~~~~~~~~~~~~g~~~~ 60 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS--------KEDEANSVLEEIKKVGGEAI 60 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC--------cHHHHHHHHHHHHhcCCcEE
Confidence 5777777775 579999999999999999988764 34456667777888877654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.03 E-value=0.66 Score=36.69 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCCccCC
Q 013914 163 NGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMP 200 (434)
Q Consensus 163 ~~~v~ViG-~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~ 200 (434)
-++|+|.| +|.+|..++..|.+.|.+|+.+.|.+.-++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 47899999 599999999999999999999998765544
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=83.93 E-value=0.7 Score=35.56 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYP 194 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~ 194 (434)
++.+|+|+|+|.+|+-.+..++..|. +|..+++
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~ 60 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccc
Confidence 67899999999999999999999996 6777764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.93 E-value=1.6 Score=35.99 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=40.4
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEE
Q 013914 162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 162 ~~~~v~ViG~g-~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
++|.++|.|++ -+|..+|..|++.|.+|.+..+ +++-.+.+.+.+++.|.++
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r---------~~~~l~~~~~~~~~~g~~~ 56 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDM---------NREALEKAEASVREKGVEA 56 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---------CHHHHHHHHHHHHTTTSCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC---------CHHHHHHHHHHHHhcCCcE
Confidence 57888888864 6999999999999999999875 3444556667777777653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.77 E-value=0.57 Score=35.67 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++++++|+|+|.+|+-.+..++..|.+|..+.+.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 6789999999999999999999999998888653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=83.66 E-value=0.8 Score=34.96 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~ 195 (434)
+.++++|+|+|-.+--++..|.+.|. +++++.|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence 56799999999999999999999995 78888764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=83.50 E-value=0.57 Score=36.10 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=27.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
..|+|+|+|..|++++..++..|.. +|++++.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~--~Vi~~~~~~ 63 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAA--RIIGVDINK 63 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEECSCG
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCc--eEEeecCcH
Confidence 4699999999999999999998754 377787763
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=83.43 E-value=0.37 Score=39.33 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=27.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~ 197 (434)
-++|||+|+.|+.+|..+++.| ..|.+++..+.
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~ 38 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence 5899999999999999999988 46888876543
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.39 E-value=0.54 Score=37.89 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCCCcEEEEeCCCC
Q 013914 5 SFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAV 42 (434)
Q Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~~V~vie~~~~ 42 (434)
.++|+|||+|.+|.-+|..+++.+.+ ++++-+...
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~---~~~~~~~~~ 66 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAE---LFVFQRTPH 66 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSE---EEEEESSCC
T ss_pred CCEEEEECCCccHHHHHHHHHhhhcc---ccccccccc
Confidence 57999999999999999999998765 677666543
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=83.33 E-value=0.49 Score=41.80 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCccC
Q 013914 165 KAVVVGGGYIGLELSAALKINN-IDVSMVYPEPWCM 199 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g-~~v~lv~~~~~~~ 199 (434)
-++|||+|..|+-+|..|++.+ .+|.++++++...
T Consensus 19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~ 54 (385)
T d1cf3a1 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYES 54 (385)
T ss_dssp EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCT
T ss_pred EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCC
Confidence 5799999999999999999876 7999999986543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=82.96 E-value=0.75 Score=36.23 Aligned_cols=34 Identities=21% Similarity=0.095 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.++++.|||.|.+|.++|..+..+|.+|...++.
T Consensus 42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197)
T d1j4aa1 42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF 75 (197)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cCCeEEEecccccchhHHHhHhhhcccccccCcc
Confidence 4789999999999999999999999999887653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.83 E-value=1.3 Score=36.46 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=40.6
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEE
Q 013914 162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 162 ~~~~v~ViG~g-~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
.+|.++|.|++ -+|.++|..|.+.|.+|.+..+. +.+..+.+.+.+++.|.++
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~ 58 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS--------SSKAAEEVVAELKKLGAQG 58 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC--------ChHHHHHHHHHHHHcCCCc
Confidence 46777777754 69999999999999999886653 4556677777788877654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=82.42 E-value=0.57 Score=35.36 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEcc
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYP 194 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~ 194 (434)
.+|+++|+|-|+.|--+|..++..|.+|++.+.
T Consensus 22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~ 54 (163)
T d1v8ba1 22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEI 54 (163)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred cCCEEEEecccccchhHHHHHHhCCCEEEEEec
Confidence 689999999999999999999999999999974
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.41 E-value=1 Score=34.65 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.1
Q ss_pred HHhCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 158 IKAKKNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 158 l~~~~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
....++++++|+|+|-++--++..|.+.| +++++.|.
T Consensus 13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~ 49 (177)
T d1nvta1 13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT 49 (177)
T ss_dssp HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence 33347899999999999988888888777 88888764
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=81.85 E-value=0.86 Score=35.94 Aligned_cols=34 Identities=24% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.++++.|+|.|.+|.++|..+..+|.+|..+++.
T Consensus 44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 77 (199)
T d1dxya1 44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY 77 (199)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cceeeeeeecccccccccccccccceeeeccCCc
Confidence 4689999999999999999999999999988764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.59 E-value=0.77 Score=35.10 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~ 195 (434)
++.+++|+|+|.+|+-.+..+...|. +|.++++.
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence 56899999999999999999999998 67777643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.35 E-value=1 Score=34.27 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++++|+|+|+|.+|+-.+..++..|.++..+.+.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~ 63 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS 63 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccc
Confidence 6789999999999999999999999998877654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=81.35 E-value=2.5 Score=34.62 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEE
Q 013914 162 KNGKAVVVGG-GYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 162 ~~~~v~ViG~-g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
++|.++|.|+ +-+|.++|..|++.|.+|.+..+. ++-.+.+.+.+++.+..++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~---------~~~l~~~~~~~~~~~~~~~ 58 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN---------EKELDECLEIWREKGLNVE 58 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCCce
Confidence 5789999995 569999999999999999998864 3334455566777776653
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=81.31 E-value=0.87 Score=35.04 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.+|.|||-|..|.-+|..|.+.|++|++++|.
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~ 34 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT 34 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence 58999999999999999999999999998765
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.25 E-value=0.6 Score=37.65 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-eEEEEcc
Q 013914 165 KAVVVGGGYIGLELSAALKINNI-DVSMVYP 194 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~ 194 (434)
-++|||+|+.|+.+|..+++.|. .|.+++.
T Consensus 5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~ 35 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV 35 (238)
T ss_dssp SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence 58999999999999999999875 6777764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=81.23 E-value=1 Score=38.90 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 4 KSFKYVILGG-GVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 4 ~~~dvvIIG~-G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
+++.|+|+|| |.-|-..+..|.+.|++ |.++.|+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~---V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHH---VRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCC---EEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCe---EEEEECCc
Confidence 5789999996 99999999999999987 99998763
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| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.20 E-value=0.88 Score=39.54 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCCCcEEEEC-CCHHHHHHHHHHHHcCCCCCcEEEEeCCC
Q 013914 2 AEKSFKYVILG-GGVSAGYAAREFAKQGVKPGELAIISKEA 41 (434)
Q Consensus 2 ~~~~~dvvIIG-~G~aGl~aA~~l~~~g~~~~~V~vie~~~ 41 (434)
|++.++|+|.| +|.-|-..+..|.++|++ |+++++..
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~---V~~~d~~~ 49 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHY---VIASDWKK 49 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCE---EEEEeCCC
Confidence 34567899997 799999999999999876 99998753
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.18 E-value=0.69 Score=35.81 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNI-DVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~-~v~lv~~~ 195 (434)
++.+|+|+|+|.+|+-++..+...|. +|+.+++.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~ 62 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccc
Confidence 56899999999999999999999997 68887653
|
| >d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.15 E-value=1.8 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=26.1
Q ss_pred eeEEeccCceeEEeecCCCCEEEEcCCCcccCCCcEEEEEEeCCEEEEEEEecC
Q 013914 346 YFYSRAFDLSWQFYGDNVGDTVLFGDNDLASATHKFGTYWIKDGKVVGVFLESG 399 (434)
Q Consensus 346 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~~~~g~ 399 (434)
+.+.++-++.++.+|...|+-.-.. .-.|.++++++|+|+..+++
T Consensus 10 Ss~FKfgd~~iAiiG~~~g~G~Wid---------~~tK~Fy~d~KiiGaVV~~D 54 (62)
T d1xhca3 10 STVFKFGKLQIAIIGNTKGEGKWIE---------DNTKVFYENGKIIGAVVFND 54 (62)
T ss_dssp EEEEEETTEEEEEEECCSSCEEEEE---------TTEEEEC-----CEEEEESC
T ss_pred eeeeeeCCccEEEEEeccCcceeec---------ccceeeeeCCcEEEEEEehh
Confidence 3456667788888887766532221 11466778999999999985
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| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=81.12 E-value=1.1 Score=35.15 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 162 KNGKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 162 ~~~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
.++++.|||.|.+|-++|..+..+|.+|...++.
T Consensus 48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 81 (193)
T d1mx3a1 48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY 81 (193)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTT
T ss_pred eCceEEEeccccccccceeeeeccccceeeccCc
Confidence 5789999999999999999999999999988764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.03 E-value=0.96 Score=37.33 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=30.1
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCC
Q 013914 162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEP 196 (434)
Q Consensus 162 ~~~~v~ViG~g-~~~~e~a~~l~~~g~~v~lv~~~~ 196 (434)
++|.++|.|++ -+|..+|..|++.|.+|.+..+..
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57888888865 599999999999999999998764
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=80.96 E-value=0.47 Score=41.34 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEccCCc
Q 013914 165 KAVVVGGGYIGLELSAALKINNIDVSMVYPEPW 197 (434)
Q Consensus 165 ~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~~~ 197 (434)
-++|||+|..|+-+|..|++. .+|.++++++.
T Consensus 28 D~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~ 59 (351)
T d1ju2a1 28 DYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL 59 (351)
T ss_dssp EEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred cEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence 679999999999999999886 89999999864
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| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.76 E-value=0.83 Score=34.62 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEccC
Q 013914 164 GKAVVVGGGYIGLELSAALKINNIDVSMVYPE 195 (434)
Q Consensus 164 ~~v~ViG~g~~~~e~a~~l~~~g~~v~lv~~~ 195 (434)
++|.+||-|..|..+|..|.+.|++|++.++.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~ 33 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLV 33 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence 47999999999999999999999999988753
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| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.55 E-value=2 Score=35.46 Aligned_cols=54 Identities=22% Similarity=0.257 Sum_probs=41.4
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEEE
Q 013914 162 KNGKAVVVG-GGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII 223 (434)
Q Consensus 162 ~~~~v~ViG-~g~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~~ 223 (434)
++|.++|.| ++-+|..+|..|.+.|.+|.+..+. ..+..+.+.+.+++.|.+++
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~--------~~~~~~~~~~~~~~~g~~~~ 71 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN--------STESAEEVVAAIKKNGSDAA 71 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS--------CHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC--------chHHHHHHHHHHHhhCCcee
Confidence 467888887 4578999999999999999988754 44556666777788776543
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=80.23 E-value=1 Score=33.24 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=33.9
Q ss_pred hHhhcCcEEEcCC--eeEEEECCCCEEEccCCcEEEcceEEEe
Q 013914 81 WYKEKGIELILST--EIVRADIASKTLLSATGLIFKYQILVIA 121 (434)
Q Consensus 81 ~~~~~~v~~~~~~--~v~~i~~~~~~v~~~~~~~~~~d~lvlA 121 (434)
.+++.++++..+. .+.++|...+.+.+.+|+++.||.+.+-
T Consensus 97 ~~~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 97 GTENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI 139 (141)
T ss_dssp TTSSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred HHHhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence 3456789999764 5888999999999999999999998874
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=80.20 E-value=0.61 Score=35.86 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=24.6
Q ss_pred CcEEEECCCHHHHHHHH--HHHH-cCCCCCcEEEEeCCC
Q 013914 6 FKYVILGGGVSAGYAAR--EFAK-QGVKPGELAIISKEA 41 (434)
Q Consensus 6 ~dvvIIG~G~aGl~aA~--~l~~-~g~~~~~V~vie~~~ 41 (434)
.+|.|||+|..|.+.+. .+.+ ..+...+++++|.++
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~ 41 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE 41 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence 58999999999976543 2332 233334799999873
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.16 E-value=2.3 Score=34.55 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=37.9
Q ss_pred CCCcEEEECCC-HHHHHHHHHHHhCCCeEEEEccCCccCCccCCHHHHHHHHHHHHhcCcEE
Q 013914 162 KNGKAVVVGGG-YIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKI 222 (434)
Q Consensus 162 ~~~~v~ViG~g-~~~~e~a~~l~~~g~~v~lv~~~~~~~~~~~~~~~~~~~~~~l~~~GV~~ 222 (434)
.+|.++|-|++ -+|.++|..|++.|.+|.+..+. ++-.+.+.+.+++.|.++
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~---------~~~l~~~~~~~~~~~~~~ 58 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN---------KHGLEETAAKCKGLGAKV 58 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC---------HHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---------HHHHHHHHHHHHhcCCcE
Confidence 46777777865 59999999999999999998764 333445555566666543
|